Query 008818
Match_columns 552
No_of_seqs 904 out of 4492
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 16:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 4.6E-44 9.9E-49 331.6 25.7 363 94-548 123-487 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 7.3E-41 1.6E-45 310.4 24.8 399 92-548 53-453 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-34 2.4E-39 298.8 42.5 387 92-549 132-574 (615)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 5E-32 1.1E-36 296.2 38.5 410 96-544 474-898 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 5.3E-31 1.1E-35 288.2 40.2 419 93-548 369-801 (899)
6 PRK11447 cellulose synthase su 100.0 3.6E-31 7.8E-36 289.9 38.4 393 128-549 275-703 (1157)
7 PRK11447 cellulose synthase su 100.0 1.1E-30 2.4E-35 286.1 39.1 415 93-548 118-668 (1157)
8 PRK15174 Vi polysaccharide exp 100.0 5.2E-30 1.1E-34 262.9 36.5 324 133-547 52-382 (656)
9 TIGR00990 3a0801s09 mitochondr 100.0 9.4E-30 2E-34 262.2 35.6 344 93-518 166-577 (615)
10 KOG0547 Translocase of outer m 100.0 9.3E-30 2E-34 230.8 29.3 389 89-548 117-568 (606)
11 PRK15174 Vi polysaccharide exp 100.0 3.9E-29 8.5E-34 256.5 36.6 349 94-547 49-404 (656)
12 KOG2002 TPR-containing nuclear 100.0 3.9E-29 8.5E-34 244.6 31.6 434 92-548 204-711 (1018)
13 KOG1126 DNA-binding cell divis 100.0 8.1E-29 1.8E-33 234.0 22.8 292 136-550 332-624 (638)
14 KOG2002 TPR-containing nuclear 100.0 1.9E-26 4.1E-31 226.0 32.5 410 109-549 115-562 (1018)
15 PRK10049 pgaA outer membrane p 100.0 6.1E-26 1.3E-30 238.0 35.1 403 99-550 27-460 (765)
16 KOG1126 DNA-binding cell divis 99.9 2.2E-26 4.8E-31 217.7 22.4 267 94-406 353-626 (638)
17 PRK10049 pgaA outer membrane p 99.9 2.3E-24 4.9E-29 226.2 34.8 369 133-550 25-426 (765)
18 PRK11788 tetratricopeptide rep 99.9 1.9E-24 4E-29 212.2 31.5 304 124-547 37-348 (389)
19 PRK09782 bacteriophage N4 rece 99.9 1.2E-23 2.6E-28 220.6 37.3 373 137-549 356-743 (987)
20 PRK09782 bacteriophage N4 rece 99.9 3.4E-24 7.4E-29 224.7 32.0 298 143-535 461-762 (987)
21 KOG1155 Anaphase-promoting com 99.9 1.5E-22 3.3E-27 183.1 35.2 350 154-545 161-535 (559)
22 KOG0624 dsRNA-activated protei 99.9 2.7E-23 5.8E-28 180.9 27.7 319 153-549 34-373 (504)
23 KOG0547 Translocase of outer m 99.9 7.3E-24 1.6E-28 192.8 23.6 342 158-550 116-536 (606)
24 KOG2076 RNA polymerase III tra 99.9 5.6E-22 1.2E-26 193.8 36.8 325 136-544 152-510 (895)
25 PRK11788 tetratricopeptide rep 99.9 7.5E-23 1.6E-27 200.8 30.8 257 225-549 46-314 (389)
26 KOG1129 TPR repeat-containing 99.9 1.2E-23 2.6E-28 181.9 21.3 221 231-548 240-460 (478)
27 KOG1173 Anaphase-promoting com 99.9 2.7E-22 5.8E-27 186.2 29.8 406 125-549 52-521 (611)
28 KOG0624 dsRNA-activated protei 99.9 3.2E-23 7E-28 180.4 21.8 296 93-407 44-343 (504)
29 KOG0548 Molecular co-chaperone 99.9 3.9E-22 8.4E-27 184.5 26.8 324 224-549 12-458 (539)
30 KOG1155 Anaphase-promoting com 99.9 3.6E-21 7.9E-26 174.3 31.4 277 153-519 258-543 (559)
31 PRK14574 hmsH outer membrane p 99.9 7.9E-21 1.7E-25 195.5 35.6 400 118-550 30-517 (822)
32 PF13429 TPR_15: Tetratricopep 99.9 8E-23 1.7E-27 189.9 15.7 255 224-547 18-278 (280)
33 KOG0495 HAT repeat protein [RN 99.9 1E-19 2.2E-24 171.5 35.9 419 110-545 398-879 (913)
34 KOG0548 Molecular co-chaperone 99.9 1.8E-20 4E-25 173.5 28.9 383 92-542 7-485 (539)
35 KOG2003 TPR repeat-containing 99.9 1.1E-20 2.5E-25 170.6 26.8 382 137-549 215-692 (840)
36 PRK12370 invasion protein regu 99.9 1.4E-20 3E-25 190.6 30.9 249 226-544 273-533 (553)
37 KOG1173 Anaphase-promoting com 99.9 1.4E-20 3.1E-25 174.8 26.8 292 155-529 242-535 (611)
38 KOG4162 Predicted calmodulin-b 99.9 9.4E-20 2E-24 175.4 29.0 408 109-552 344-789 (799)
39 PRK11189 lipoprotein NlpI; Pro 99.9 2.8E-20 6.2E-25 172.7 24.9 238 224-532 36-286 (296)
40 PRK11189 lipoprotein NlpI; Pro 99.9 1.4E-19 3E-24 168.2 29.3 221 259-548 37-267 (296)
41 PRK12370 invasion protein regu 99.9 1.3E-19 2.8E-24 183.5 30.9 226 152-412 251-482 (553)
42 KOG2076 RNA polymerase III tra 99.9 1.8E-19 3.9E-24 176.4 29.8 303 226-549 151-481 (895)
43 KOG1125 TPR repeat-containing 99.9 7.1E-21 1.5E-25 177.7 18.0 232 224-515 295-530 (579)
44 TIGR00540 hemY_coli hemY prote 99.9 4.3E-19 9.3E-24 173.3 30.4 298 161-547 88-400 (409)
45 KOG2003 TPR repeat-containing 99.9 3.9E-19 8.4E-24 160.8 26.9 277 223-532 428-709 (840)
46 PRK14574 hmsH outer membrane p 99.9 6E-18 1.3E-22 174.4 37.2 352 151-547 28-397 (822)
47 KOG1127 TPR repeat-containing 99.9 6E-19 1.3E-23 173.7 27.9 399 109-549 479-916 (1238)
48 KOG0495 HAT repeat protein [RN 99.9 3.9E-18 8.3E-23 161.0 31.6 366 97-525 526-893 (913)
49 TIGR02521 type_IV_pilW type IV 99.8 9.7E-19 2.1E-23 158.8 27.1 203 246-547 29-233 (234)
50 PF13429 TPR_15: Tetratricopep 99.8 6E-21 1.3E-25 177.3 11.9 258 94-399 15-276 (280)
51 KOG1125 TPR repeat-containing 99.8 1.1E-19 2.5E-24 169.7 20.0 261 92-391 290-562 (579)
52 PLN03081 pentatricopeptide (PP 99.8 5.6E-18 1.2E-22 177.7 34.8 369 133-546 168-557 (697)
53 KOG0550 Molecular chaperone (D 99.8 5.9E-20 1.3E-24 164.3 16.3 283 224-549 59-353 (486)
54 KOG1156 N-terminal acetyltrans 99.8 3.8E-17 8.3E-22 154.6 34.2 369 134-547 18-435 (700)
55 COG3063 PilF Tfp pilus assembl 99.8 3.4E-18 7.5E-23 141.8 23.9 141 248-409 35-177 (250)
56 PLN02789 farnesyltranstransfer 99.8 3.3E-18 7.2E-23 157.9 26.6 208 228-530 51-268 (320)
57 PRK10747 putative protoheme IX 99.8 2.7E-17 5.8E-22 159.7 34.3 304 159-549 86-393 (398)
58 COG3063 PilF Tfp pilus assembl 99.8 1.8E-18 3.9E-23 143.4 21.0 205 157-405 35-241 (250)
59 KOG1174 Anaphase-promoting com 99.8 1.1E-17 2.3E-22 149.8 26.3 290 152-531 227-519 (564)
60 TIGR02521 type_IV_pilW type IV 99.8 4.7E-18 1E-22 154.3 23.9 204 155-402 29-234 (234)
61 KOG1129 TPR repeat-containing 99.8 4E-19 8.6E-24 154.1 14.1 160 231-411 307-469 (478)
62 KOG1127 TPR repeat-containing 99.8 5.6E-18 1.2E-22 167.0 23.6 365 135-549 470-882 (1238)
63 KOG0550 Molecular chaperone (D 99.8 7.7E-18 1.7E-22 150.9 21.0 279 91-403 53-353 (486)
64 PLN03077 Protein ECB2; Provisi 99.8 2.4E-16 5.2E-21 169.6 35.4 369 135-546 335-720 (857)
65 KOG1174 Anaphase-promoting com 99.8 4.3E-16 9.4E-21 139.6 29.9 286 231-550 215-504 (564)
66 cd05804 StaR_like StaR_like; a 99.8 1.8E-16 3.8E-21 153.6 30.2 316 153-548 2-338 (355)
67 TIGR00540 hemY_coli hemY prote 99.8 2.8E-16 6E-21 153.6 31.1 270 250-548 86-368 (409)
68 PLN02789 farnesyltranstransfer 99.8 4.2E-17 9.1E-22 150.7 22.1 210 137-384 51-268 (320)
69 PLN03218 maturation of RBCL 1; 99.8 4.6E-15 9.9E-20 157.6 40.1 351 136-547 419-784 (1060)
70 KOG1840 Kinesin light chain [C 99.8 1.8E-16 3.9E-21 152.7 25.0 246 243-547 194-480 (508)
71 COG2956 Predicted N-acetylgluc 99.8 2.2E-15 4.7E-20 131.2 28.1 202 133-403 45-246 (389)
72 PRK10747 putative protoheme IX 99.8 2.5E-15 5.5E-20 146.0 31.0 269 250-549 86-360 (398)
73 KOG1840 Kinesin light chain [C 99.7 4.9E-16 1.1E-20 149.7 24.3 252 152-511 194-478 (508)
74 PLN03218 maturation of RBCL 1; 99.7 3.7E-14 8.1E-19 150.8 40.7 350 136-546 383-748 (1060)
75 KOG1915 Cell cycle control pro 99.7 4.2E-14 9.1E-19 129.3 34.5 392 109-545 94-499 (677)
76 COG2956 Predicted N-acetylgluc 99.7 4.6E-15 1E-19 129.1 25.4 237 254-548 41-280 (389)
77 KOG4162 Predicted calmodulin-b 99.7 1.9E-14 4E-19 139.4 32.2 376 133-549 333-752 (799)
78 KOG1156 N-terminal acetyltrans 99.7 8.7E-15 1.9E-19 138.9 27.6 265 225-548 18-285 (700)
79 PRK15359 type III secretion sy 99.7 5.1E-16 1.1E-20 127.1 16.1 127 234-384 13-139 (144)
80 PLN03081 pentatricopeptide (PP 99.7 3E-13 6.6E-18 142.2 39.4 344 134-543 134-488 (697)
81 TIGR03302 OM_YfiO outer membra 99.7 6.6E-15 1.4E-19 133.3 22.7 196 245-548 30-234 (235)
82 TIGR03302 OM_YfiO outer membra 99.7 4.7E-15 1E-19 134.2 21.1 193 153-403 29-235 (235)
83 PRK15359 type III secretion sy 99.7 2.2E-15 4.7E-20 123.4 15.3 123 268-414 13-135 (144)
84 PLN03077 Protein ECB2; Provisi 99.7 3.8E-13 8.1E-18 145.0 34.9 373 135-543 234-651 (857)
85 KOG3785 Uncharacterized conser 99.6 7.6E-14 1.7E-18 123.0 22.7 314 224-543 32-419 (557)
86 PRK10370 formate-dependent nit 99.6 1.2E-14 2.5E-19 125.7 17.4 127 261-407 52-180 (198)
87 cd05804 StaR_like StaR_like; a 99.6 2E-13 4.3E-18 132.3 28.2 293 138-513 21-337 (355)
88 PRK10370 formate-dependent nit 99.6 2.6E-14 5.6E-19 123.6 19.3 126 226-372 51-179 (198)
89 KOG2376 Signal recognition par 99.6 2.1E-12 4.5E-17 121.7 32.4 376 133-549 22-490 (652)
90 PRK14720 transcript cleavage f 99.6 8.3E-14 1.8E-18 142.2 23.8 259 152-547 26-284 (906)
91 PRK15179 Vi polysaccharide bio 99.6 1E-13 2.2E-18 140.8 24.0 199 156-409 27-226 (694)
92 KOG3060 Uncharacterized conser 99.6 1.3E-12 2.9E-17 110.2 23.9 162 229-411 27-194 (289)
93 KOG1130 Predicted G-alpha GTPa 99.6 1.4E-14 3.1E-19 130.0 12.2 281 225-547 28-345 (639)
94 KOG3060 Uncharacterized conser 99.6 3.5E-12 7.6E-17 107.8 25.2 169 225-414 63-234 (289)
95 KOG1130 Predicted G-alpha GTPa 99.6 2E-13 4.4E-18 122.7 18.8 308 161-535 21-373 (639)
96 KOG2376 Signal recognition par 99.6 3E-11 6.4E-16 114.1 32.7 361 159-548 14-448 (652)
97 KOG1915 Cell cycle control pro 99.6 9.2E-11 2E-15 107.8 35.0 352 151-551 67-438 (677)
98 PF12569 NARP1: NMDA receptor- 99.6 3.8E-11 8.2E-16 117.8 35.1 420 98-543 15-517 (517)
99 COG5010 TadD Flp pilus assembl 99.6 1.5E-12 3.2E-17 111.2 20.9 137 240-397 92-228 (257)
100 COG5010 TadD Flp pilus assembl 99.5 2.7E-12 5.9E-17 109.6 20.8 161 229-411 48-208 (257)
101 TIGR02552 LcrH_SycD type III s 99.5 4.4E-13 9.5E-18 109.8 15.5 119 235-374 4-122 (135)
102 TIGR02552 LcrH_SycD type III s 99.5 4.5E-13 9.8E-18 109.7 15.5 119 269-408 4-122 (135)
103 KOG0553 TPR repeat-containing 99.5 3.9E-13 8.6E-18 116.9 13.7 119 249-388 82-200 (304)
104 KOG0553 TPR repeat-containing 99.5 1.3E-13 2.9E-18 119.8 10.1 104 224-327 91-194 (304)
105 KOG2047 mRNA splicing factor [ 99.5 2.9E-10 6.4E-15 108.4 32.9 414 98-549 36-582 (835)
106 PF12569 NARP1: NMDA receptor- 99.5 5E-11 1.1E-15 117.0 28.7 63 343-405 200-262 (517)
107 KOG1128 Uncharacterized conser 99.5 1.3E-12 2.8E-17 126.1 16.8 221 154-479 395-615 (777)
108 COG3071 HemY Uncharacterized e 99.5 3.4E-10 7.4E-15 102.4 30.9 273 250-551 86-395 (400)
109 PRK04841 transcriptional regul 99.5 9.1E-11 2E-15 128.3 33.5 320 156-549 408-763 (903)
110 KOG4340 Uncharacterized conser 99.5 1.6E-10 3.4E-15 100.1 26.6 356 133-550 20-447 (459)
111 PRK15179 Vi polysaccharide bio 99.5 4.4E-12 9.6E-17 129.0 20.1 140 203-374 86-225 (694)
112 KOG3785 Uncharacterized conser 99.5 9.1E-10 2E-14 97.7 31.1 362 137-540 71-451 (557)
113 PRK15363 pathogenicity island 99.5 5.8E-12 1.2E-16 100.6 15.7 107 240-367 26-133 (157)
114 PRK14720 transcript cleavage f 99.4 1.8E-11 4E-16 125.3 21.5 212 242-550 25-256 (906)
115 KOG1128 Uncharacterized conser 99.4 4.9E-12 1.1E-16 122.3 16.2 207 224-512 408-616 (777)
116 PRK15363 pathogenicity island 99.4 1E-11 2.2E-16 99.1 13.6 110 273-403 25-135 (157)
117 COG4783 Putative Zn-dependent 99.4 4.5E-10 9.7E-15 104.5 24.1 153 279-513 303-455 (484)
118 COG3071 HemY Uncharacterized e 99.3 2.3E-09 4.9E-14 97.1 27.1 297 161-512 88-390 (400)
119 PLN03088 SGT1, suppressor of 99.3 4.7E-11 1E-15 113.6 16.2 113 251-384 5-117 (356)
120 KOG1941 Acetylcholine receptor 99.3 9E-10 2E-14 98.0 22.6 314 158-546 7-360 (518)
121 KOG4340 Uncharacterized conser 99.3 1E-09 2.2E-14 95.1 21.1 175 225-400 21-207 (459)
122 PLN03088 SGT1, suppressor of 99.3 3.3E-11 7.2E-16 114.7 12.7 104 224-327 12-115 (356)
123 PF04733 Coatomer_E: Coatomer 99.3 5.3E-11 1.1E-15 109.0 12.9 252 224-549 11-268 (290)
124 COG4783 Putative Zn-dependent 99.2 8E-10 1.7E-14 102.8 18.3 140 245-405 303-442 (484)
125 PRK10866 outer membrane biogen 99.2 1.8E-09 3.9E-14 96.5 20.2 166 225-397 43-238 (243)
126 CHL00033 ycf3 photosystem I as 99.2 5.7E-10 1.2E-14 94.8 16.3 102 227-328 12-118 (168)
127 KOG2047 mRNA splicing factor [ 99.2 3.8E-08 8.1E-13 94.4 29.1 213 150-403 342-582 (835)
128 COG4235 Cytochrome c biogenesi 99.2 7.2E-10 1.6E-14 97.7 16.5 127 264-408 138-264 (287)
129 PRK10866 outer membrane biogen 99.2 9.4E-09 2E-13 91.9 23.8 55 488-542 180-237 (243)
130 PF13414 TPR_11: TPR repeat; P 99.2 5.5E-11 1.2E-15 84.1 7.6 67 247-313 2-69 (69)
131 COG4235 Cytochrome c biogenesi 99.2 7.6E-10 1.6E-14 97.6 15.1 123 228-371 136-261 (287)
132 PRK04841 transcriptional regul 99.2 7E-08 1.5E-12 105.8 34.3 344 158-549 342-723 (903)
133 PF13525 YfiO: Outer membrane 99.2 3.9E-09 8.4E-14 92.3 19.4 174 157-391 5-198 (203)
134 TIGR02795 tol_pal_ybgF tol-pal 99.2 8E-10 1.7E-14 88.2 14.0 107 248-375 2-114 (119)
135 PRK02603 photosystem I assembl 99.2 1.1E-09 2.3E-14 93.4 14.8 84 244-327 31-117 (172)
136 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.4E-09 3E-14 86.8 14.3 106 282-408 2-113 (119)
137 PF13525 YfiO: Outer membrane 99.1 1.8E-08 3.9E-13 88.1 22.0 186 247-537 4-198 (203)
138 PRK11906 transcriptional regul 99.1 3.8E-09 8.3E-14 99.0 17.7 152 227-399 271-435 (458)
139 PF13414 TPR_11: TPR repeat; P 99.1 2.8E-10 6.1E-15 80.4 7.8 66 483-548 3-69 (69)
140 PF12895 Apc3: Anaphase-promot 99.1 2.4E-10 5.2E-15 84.2 7.7 81 227-308 2-84 (84)
141 PRK10153 DNA-binding transcrip 99.1 5.9E-09 1.3E-13 103.4 19.5 142 244-407 333-489 (517)
142 cd00189 TPR Tetratricopeptide 99.1 1.6E-09 3.4E-14 82.7 12.2 99 250-369 2-100 (100)
143 COG4785 NlpI Lipoprotein NlpI, 99.1 1.3E-08 2.7E-13 84.3 17.5 105 247-372 64-168 (297)
144 KOG4648 Uncharacterized conser 99.1 7.2E-11 1.6E-15 104.1 4.7 91 457-547 240-331 (536)
145 PF13432 TPR_16: Tetratricopep 99.1 4.8E-10 1E-14 78.1 8.0 65 252-316 1-65 (65)
146 cd00189 TPR Tetratricopeptide 99.1 1.9E-09 4.1E-14 82.2 12.2 99 284-403 2-100 (100)
147 KOG0543 FKBP-type peptidyl-pro 99.1 6.6E-09 1.4E-13 95.0 17.3 128 158-327 209-336 (397)
148 COG4785 NlpI Lipoprotein NlpI, 99.1 1.1E-08 2.4E-13 84.6 16.7 216 281-533 64-291 (297)
149 PF09976 TPR_21: Tetratricopep 99.1 9.4E-09 2E-13 84.7 16.7 117 260-398 23-145 (145)
150 PF09976 TPR_21: Tetratricopep 99.1 4.1E-09 8.9E-14 86.9 14.3 117 226-364 23-145 (145)
151 PF14938 SNAP: Soluble NSF att 99.1 1.5E-08 3.3E-13 93.7 19.7 152 249-416 76-241 (282)
152 PF04733 Coatomer_E: Coatomer 99.1 1.9E-09 4.1E-14 98.8 13.3 157 224-406 112-271 (290)
153 PRK02603 photosystem I assembl 99.1 3.2E-09 7E-14 90.4 12.9 105 279-404 32-153 (172)
154 KOG0543 FKBP-type peptidyl-pro 99.1 6.2E-09 1.3E-13 95.2 15.2 133 249-402 209-357 (397)
155 CHL00033 ycf3 photosystem I as 99.1 4.7E-09 1E-13 89.2 13.8 123 262-405 13-154 (168)
156 KOG1070 rRNA processing protei 99.0 4.3E-08 9.3E-13 101.8 22.3 218 144-402 1445-1665(1710)
157 PF13432 TPR_16: Tetratricopep 99.0 1.2E-09 2.6E-14 76.0 7.5 63 488-550 2-64 (65)
158 PRK15331 chaperone protein Sic 99.0 1.4E-08 3.1E-13 81.7 14.1 110 239-370 28-137 (165)
159 PRK11906 transcriptional regul 99.0 1.6E-08 3.5E-13 94.9 16.6 162 135-365 270-435 (458)
160 KOG4648 Uncharacterized conser 99.0 5.1E-10 1.1E-14 98.8 6.0 181 224-405 107-301 (536)
161 PRK10803 tol-pal system protei 99.0 1.2E-08 2.7E-13 91.7 14.4 95 225-319 154-254 (263)
162 PF12895 Apc3: Anaphase-promot 99.0 1.9E-09 4.1E-14 79.4 7.3 47 349-396 37-83 (84)
163 PF14938 SNAP: Soluble NSF att 99.0 9.4E-09 2E-13 95.1 13.5 209 162-402 40-268 (282)
164 PRK10153 DNA-binding transcrip 99.0 1.7E-08 3.7E-13 100.1 15.8 125 226-372 354-488 (517)
165 KOG1941 Acetylcholine receptor 99.0 5.1E-08 1.1E-12 87.1 16.9 239 250-549 8-278 (518)
166 COG0457 NrfG FOG: TPR repeat [ 99.0 1E-06 2.3E-11 80.2 27.1 222 228-515 37-268 (291)
167 PRK10803 tol-pal system protei 98.9 4.6E-08 9.9E-13 88.1 15.8 106 248-374 142-254 (263)
168 PF12688 TPR_5: Tetratrico pep 98.9 4.3E-08 9.2E-13 76.1 13.3 96 249-365 2-103 (120)
169 PRK15331 chaperone protein Sic 98.9 2.1E-08 4.6E-13 80.7 11.0 109 274-404 29-137 (165)
170 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 7.4E-08 1.6E-12 91.2 16.0 122 253-398 174-295 (395)
171 KOG2053 Mitochondrial inherita 98.8 0.00015 3.2E-09 73.3 37.6 227 135-404 21-259 (932)
172 PF14559 TPR_19: Tetratricopep 98.8 8.5E-09 1.8E-13 72.5 6.1 65 226-290 3-67 (68)
173 KOG4234 TPR repeat-containing 98.8 3.4E-08 7.3E-13 80.8 10.0 101 224-324 105-210 (271)
174 KOG3617 WD40 and TPR repeat-co 98.8 4.8E-06 1E-10 82.5 26.1 224 226-477 870-1171(1416)
175 COG0457 NrfG FOG: TPR repeat [ 98.8 3.3E-06 7.3E-11 76.8 24.6 222 138-403 38-268 (291)
176 COG3898 Uncharacterized membra 98.8 2.2E-05 4.8E-10 71.5 28.1 291 164-545 91-391 (531)
177 PF13371 TPR_9: Tetratricopept 98.8 3.3E-08 7.2E-13 70.7 8.5 69 254-322 1-69 (73)
178 PF14559 TPR_19: Tetratricopep 98.8 1.8E-08 3.8E-13 70.9 6.9 67 258-324 1-67 (68)
179 KOG1070 rRNA processing protei 98.8 8.1E-07 1.7E-11 92.7 21.1 252 231-548 1441-1702(1710)
180 KOG3617 WD40 and TPR repeat-co 98.8 4.6E-06 1E-10 82.6 24.9 296 162-544 805-1172(1416)
181 PF12688 TPR_5: Tetratrico pep 98.8 2.2E-07 4.7E-12 72.2 13.0 96 283-399 2-103 (120)
182 COG4105 ComL DNA uptake lipopr 98.8 1.7E-06 3.8E-11 74.9 19.2 176 225-404 45-237 (254)
183 KOG2053 Mitochondrial inherita 98.7 1.5E-05 3.3E-10 80.1 27.1 236 224-516 19-259 (932)
184 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.4E-07 7.5E-12 86.8 14.9 113 227-363 182-294 (395)
185 COG1729 Uncharacterized protei 98.7 3.3E-07 7.1E-12 80.2 13.4 97 225-321 152-254 (262)
186 KOG4234 TPR repeat-containing 98.7 3E-07 6.4E-12 75.4 12.1 108 251-379 98-210 (271)
187 KOG3081 Vesicle coat complex C 98.7 1.4E-05 3E-10 69.1 22.4 244 225-541 19-265 (299)
188 PF13371 TPR_9: Tetratricopept 98.7 1.2E-07 2.5E-12 67.8 7.9 67 345-411 3-69 (73)
189 COG4700 Uncharacterized protei 98.7 4.5E-06 9.7E-11 67.8 17.4 147 230-399 72-221 (251)
190 COG1729 Uncharacterized protei 98.7 1E-06 2.2E-11 77.1 14.6 105 251-376 144-254 (262)
191 KOG2471 TPR repeat-containing 98.6 2E-05 4.3E-10 73.8 22.6 145 135-294 218-381 (696)
192 COG4105 ComL DNA uptake lipopr 98.6 4.5E-05 9.8E-10 66.3 23.2 173 349-540 46-227 (254)
193 PF13424 TPR_12: Tetratricopep 98.6 8.8E-08 1.9E-12 69.4 5.8 67 245-311 2-75 (78)
194 PF13512 TPR_18: Tetratricopep 98.6 1.7E-06 3.7E-11 68.3 13.1 80 248-327 10-95 (142)
195 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.1E-07 4.5E-12 87.5 9.4 69 243-311 70-141 (453)
196 PF06552 TOM20_plant: Plant sp 98.6 6.4E-07 1.4E-11 72.8 10.1 94 230-323 7-121 (186)
197 KOG3081 Vesicle coat complex C 98.6 0.0004 8.6E-09 60.4 27.2 144 246-413 106-249 (299)
198 PF13424 TPR_12: Tetratricopep 98.6 1.5E-07 3.3E-12 68.2 5.9 65 484-548 6-77 (78)
199 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 2.8E-07 6.1E-12 86.7 8.4 67 480-546 72-141 (453)
200 PF06552 TOM20_plant: Plant sp 98.5 1.8E-06 3.9E-11 70.3 11.3 105 139-290 7-122 (186)
201 COG4700 Uncharacterized protei 98.5 2.7E-05 5.8E-10 63.4 17.6 128 255-404 63-193 (251)
202 KOG4555 TPR repeat-containing 98.5 1.2E-05 2.6E-10 61.2 14.0 99 250-369 45-147 (175)
203 KOG2796 Uncharacterized conser 98.5 2.8E-05 6.2E-10 66.9 17.7 148 231-405 166-320 (366)
204 KOG1586 Protein required for f 98.5 7.7E-05 1.7E-09 63.2 19.8 149 248-413 74-237 (288)
205 PF13512 TPR_18: Tetratricopep 98.4 1E-05 2.2E-10 64.0 13.5 106 281-407 9-135 (142)
206 KOG1550 Extracellular protein 98.4 0.00011 2.3E-09 74.8 24.3 289 173-546 228-538 (552)
207 KOG4555 TPR repeat-containing 98.4 9.8E-06 2.1E-10 61.6 12.0 99 285-404 46-148 (175)
208 KOG2610 Uncharacterized conser 98.4 0.00057 1.2E-08 61.3 24.3 152 226-398 115-274 (491)
209 KOG2471 TPR repeat-containing 98.4 3.9E-05 8.5E-10 71.9 17.3 154 224-383 216-381 (696)
210 COG3898 Uncharacterized membra 98.3 0.0019 4.2E-08 59.3 26.7 228 136-413 97-337 (531)
211 PF13428 TPR_14: Tetratricopep 98.3 2E-06 4.4E-11 53.8 5.2 42 249-290 2-43 (44)
212 PF13431 TPR_17: Tetratricopep 98.3 7.9E-07 1.7E-11 51.7 3.0 34 505-538 1-34 (34)
213 KOG4642 Chaperone-dependent E3 98.3 3.3E-06 7.2E-11 71.4 7.8 88 224-311 20-107 (284)
214 KOG3616 Selective LIM binding 98.3 0.00059 1.3E-08 67.5 24.0 345 92-516 659-1028(1636)
215 PF05843 Suf: Suppressor of fo 98.3 4.1E-05 8.9E-10 70.6 15.8 135 250-405 3-141 (280)
216 KOG0376 Serine-threonine phosp 98.3 1.3E-06 2.8E-11 82.0 5.6 104 224-327 14-117 (476)
217 KOG1914 mRNA cleavage and poly 98.3 0.0051 1.1E-07 59.1 32.0 396 112-546 10-464 (656)
218 KOG2300 Uncharacterized conser 98.2 0.0033 7.2E-08 59.4 27.0 130 157-305 7-150 (629)
219 KOG1550 Extracellular protein 98.2 0.00058 1.3E-08 69.5 24.7 150 228-401 226-394 (552)
220 PF04184 ST7: ST7 protein; In 98.2 0.00018 3.9E-09 68.3 18.9 217 138-399 183-413 (539)
221 KOG4642 Chaperone-dependent E3 98.2 3.7E-06 8E-11 71.2 6.7 95 251-366 13-107 (284)
222 KOG2796 Uncharacterized conser 98.2 0.00046 9.9E-09 59.7 19.1 228 246-527 67-333 (366)
223 PF13428 TPR_14: Tetratricopep 98.2 5.2E-06 1.1E-10 52.0 5.4 43 282-324 1-43 (44)
224 KOG0545 Aryl-hydrocarbon recep 98.2 0.0001 2.2E-09 62.9 14.5 122 157-319 178-301 (329)
225 PF04184 ST7: ST7 protein; In 98.1 0.00013 2.9E-09 69.1 15.4 160 226-408 180-383 (539)
226 PF13431 TPR_17: Tetratricopep 98.1 3.4E-06 7.3E-11 49.0 3.0 32 271-302 2-33 (34)
227 KOG1586 Protein required for f 98.1 0.00081 1.8E-08 57.2 17.7 151 228-408 28-191 (288)
228 KOG1585 Protein required for f 98.1 0.0018 3.9E-08 55.6 19.6 203 158-397 32-253 (308)
229 KOG0545 Aryl-hydrocarbon recep 98.0 7.5E-05 1.6E-09 63.7 10.7 60 346-405 239-298 (329)
230 KOG1585 Protein required for f 98.0 0.0031 6.7E-08 54.2 19.6 151 349-540 83-250 (308)
231 PF00515 TPR_1: Tetratricopept 97.9 2.3E-05 4.9E-10 45.9 4.5 34 371-404 1-34 (34)
232 KOG0376 Serine-threonine phosp 97.9 2.4E-05 5.2E-10 73.7 6.6 110 252-382 8-117 (476)
233 PF00515 TPR_1: Tetratricopept 97.9 2E-05 4.3E-10 46.2 4.0 31 250-280 3-33 (34)
234 PF05843 Suf: Suppressor of fo 97.9 0.00053 1.1E-08 63.3 15.1 126 227-373 14-143 (280)
235 KOG2610 Uncharacterized conser 97.9 0.001 2.2E-08 59.8 15.8 127 254-398 109-236 (491)
236 KOG0530 Protein farnesyltransf 97.9 0.0063 1.4E-07 53.0 19.8 160 231-411 60-227 (318)
237 PF07719 TPR_2: Tetratricopept 97.9 3.5E-05 7.7E-10 45.1 4.7 31 250-280 3-33 (34)
238 PF10300 DUF3808: Protein of u 97.9 0.0065 1.4E-07 60.4 23.1 189 356-548 176-378 (468)
239 PF07719 TPR_2: Tetratricopept 97.9 4.4E-05 9.5E-10 44.7 4.9 34 371-404 1-34 (34)
240 KOG0985 Vesicle coat protein c 97.8 0.016 3.5E-07 60.0 25.2 231 229-475 1090-1378(1666)
241 KOG4507 Uncharacterized conser 97.8 0.0043 9.3E-08 60.1 19.6 92 458-549 614-708 (886)
242 PF07079 DUF1347: Protein of u 97.8 0.035 7.5E-07 52.5 28.6 135 158-310 7-156 (549)
243 COG3118 Thioredoxin domain-con 97.8 0.0014 3E-08 58.3 14.7 48 226-273 146-193 (304)
244 PF02259 FAT: FAT domain; Int 97.7 0.0097 2.1E-07 57.5 22.4 66 484-549 253-341 (352)
245 PF10345 Cohesin_load: Cohesin 97.7 0.078 1.7E-06 55.2 34.2 297 231-544 38-431 (608)
246 PF13281 DUF4071: Domain of un 97.7 0.0051 1.1E-07 57.8 18.7 166 224-404 151-338 (374)
247 PF08631 SPO22: Meiosis protei 97.7 0.041 8.8E-07 50.9 25.6 247 133-398 3-273 (278)
248 PF03704 BTAD: Bacterial trans 97.7 0.0034 7.4E-08 51.7 15.5 114 162-310 11-124 (146)
249 PF13281 DUF4071: Domain of un 97.6 0.058 1.2E-06 51.0 25.5 109 281-407 140-262 (374)
250 PF10300 DUF3808: Protein of u 97.6 0.0014 3E-08 65.1 14.8 136 169-316 200-339 (468)
251 KOG1308 Hsp70-interacting prot 97.6 1.8E-05 3.9E-10 71.0 1.1 90 225-314 125-214 (377)
252 COG3118 Thioredoxin domain-con 97.6 0.0099 2.1E-07 53.1 17.6 134 248-405 134-270 (304)
253 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.068 1.5E-06 50.5 25.1 37 150-186 35-71 (660)
254 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0009 1.9E-08 60.1 10.9 101 248-369 81-185 (390)
255 KOG3616 Selective LIM binding 97.6 0.11 2.5E-06 52.1 26.2 358 134-549 455-862 (1636)
256 PF08424 NRDE-2: NRDE-2, neces 97.5 0.011 2.5E-07 55.6 18.4 150 235-402 6-185 (321)
257 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00081 1.8E-08 60.3 9.6 103 282-405 81-187 (390)
258 PF02259 FAT: FAT domain; Int 97.5 0.097 2.1E-06 50.5 25.2 117 280-417 144-304 (352)
259 KOG2300 Uncharacterized conser 97.5 0.025 5.5E-07 53.8 19.4 212 169-405 287-519 (629)
260 KOG1308 Hsp70-interacting prot 97.5 0.00014 3E-09 65.4 4.3 91 258-369 124-214 (377)
261 COG2976 Uncharacterized protei 97.5 0.015 3.2E-07 48.5 15.6 116 232-369 70-191 (207)
262 COG2909 MalT ATP-dependent tra 97.4 0.19 4.2E-06 51.9 30.1 110 281-404 414-530 (894)
263 COG0790 FOG: TPR repeat, SEL1 97.4 0.038 8.3E-07 51.7 20.7 77 468-547 172-267 (292)
264 PF13181 TPR_8: Tetratricopept 97.4 0.0003 6.5E-09 41.0 4.1 33 372-404 2-34 (34)
265 PF03704 BTAD: Bacterial trans 97.4 0.0073 1.6E-07 49.7 13.8 91 254-365 12-124 (146)
266 PF13181 TPR_8: Tetratricopept 97.4 0.00029 6.3E-09 41.1 3.9 30 250-279 3-32 (34)
267 PF04910 Tcf25: Transcriptiona 97.4 0.027 5.9E-07 53.7 18.9 137 146-310 29-167 (360)
268 PF13176 TPR_7: Tetratricopept 97.3 0.00048 1E-08 40.7 4.4 30 519-548 1-30 (36)
269 KOG0530 Protein farnesyltransf 97.3 0.093 2E-06 46.0 21.9 154 230-398 94-251 (318)
270 PF13174 TPR_6: Tetratricopept 97.3 0.00037 7.9E-09 40.3 3.6 32 519-550 2-33 (33)
271 PF04910 Tcf25: Transcriptiona 97.3 0.016 3.4E-07 55.3 16.1 146 239-404 31-226 (360)
272 COG2909 MalT ATP-dependent tra 97.3 0.31 6.7E-06 50.5 29.4 214 156-404 414-651 (894)
273 PF08631 SPO22: Meiosis protei 97.2 0.17 3.6E-06 46.9 26.5 156 224-400 3-186 (278)
274 COG0790 FOG: TPR repeat, SEL1 97.2 0.036 7.9E-07 51.9 18.3 153 227-403 90-269 (292)
275 KOG2041 WD40 repeat protein [G 97.2 0.075 1.6E-06 53.0 20.0 240 240-543 685-936 (1189)
276 COG2976 Uncharacterized protei 97.1 0.057 1.2E-06 45.2 15.8 117 266-404 70-192 (207)
277 PF13176 TPR_7: Tetratricopept 97.1 0.001 2.3E-08 39.2 4.3 30 159-188 1-30 (36)
278 PF08424 NRDE-2: NRDE-2, neces 97.1 0.089 1.9E-06 49.7 19.4 105 303-416 6-110 (321)
279 PF10345 Cohesin_load: Cohesin 97.1 0.52 1.1E-05 49.2 32.6 156 136-310 34-207 (608)
280 KOG0890 Protein kinase of the 97.0 1.1 2.3E-05 51.9 29.7 104 445-548 1664-1786(2382)
281 KOG3824 Huntingtin interacting 97.0 0.0023 5E-08 56.8 7.0 67 226-292 128-194 (472)
282 KOG2041 WD40 repeat protein [G 97.0 0.41 8.8E-06 48.1 22.5 32 153-184 688-719 (1189)
283 PF13174 TPR_6: Tetratricopept 96.9 0.0017 3.7E-08 37.4 4.1 33 372-404 1-33 (33)
284 KOG0890 Protein kinase of the 96.9 0.78 1.7E-05 52.9 26.4 254 254-549 1455-1734(2382)
285 KOG4507 Uncharacterized conser 96.9 0.0058 1.3E-07 59.2 9.0 101 224-324 617-718 (886)
286 PF14561 TPR_20: Tetratricopep 96.8 0.017 3.6E-07 42.5 9.3 76 232-307 6-83 (90)
287 PRK10941 hypothetical protein; 96.8 0.016 3.4E-07 52.5 10.9 77 249-325 182-258 (269)
288 KOG1464 COP9 signalosome, subu 96.8 0.19 4.1E-06 44.3 16.7 217 133-385 37-286 (440)
289 KOG1258 mRNA processing protei 96.8 0.68 1.5E-05 45.9 25.4 295 230-547 61-396 (577)
290 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.012 2.6E-07 37.9 6.5 38 283-320 2-39 (53)
291 COG4649 Uncharacterized protei 96.6 0.19 4.1E-06 41.2 14.5 47 230-276 74-122 (221)
292 PF07079 DUF1347: Protein of u 96.6 0.2 4.3E-06 47.7 16.6 107 289-396 386-520 (549)
293 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.01 2.3E-07 38.2 5.9 43 485-527 3-45 (53)
294 KOG1914 mRNA cleavage and poly 96.5 0.88 1.9E-05 44.5 32.9 411 109-548 40-503 (656)
295 PF04781 DUF627: Protein of un 96.5 0.0082 1.8E-07 45.1 5.9 106 163-311 2-107 (111)
296 KOG3824 Huntingtin interacting 96.5 0.01 2.2E-07 52.8 7.2 72 254-325 122-193 (472)
297 PF09986 DUF2225: Uncharacteri 96.4 0.04 8.7E-07 48.2 10.7 101 169-278 89-195 (214)
298 PF04781 DUF627: Protein of un 96.4 0.055 1.2E-06 40.8 9.5 48 353-400 60-107 (111)
299 KOG0985 Vesicle coat protein c 96.4 1.7 3.6E-05 46.1 27.1 87 453-540 1222-1335(1666)
300 KOG3783 Uncharacterized conser 96.4 1.1 2.4E-05 43.9 22.4 243 266-548 251-522 (546)
301 KOG1258 mRNA processing protei 96.3 1.3 2.8E-05 44.1 33.8 55 134-188 56-110 (577)
302 PF09613 HrpB1_HrpK: Bacterial 96.3 0.041 8.9E-07 44.8 8.9 92 226-319 22-113 (160)
303 smart00028 TPR Tetratricopepti 96.2 0.0096 2.1E-07 33.7 3.9 30 250-279 3-32 (34)
304 PF14561 TPR_20: Tetratricopep 96.2 0.098 2.1E-06 38.5 9.8 44 360-403 11-54 (90)
305 PF09613 HrpB1_HrpK: Bacterial 96.1 0.15 3.3E-06 41.6 11.6 78 250-327 12-89 (160)
306 KOG2396 HAT (Half-A-TPR) repea 96.1 1.5 3.3E-05 42.5 30.0 84 106-190 89-173 (568)
307 KOG1464 COP9 signalosome, subu 96.1 0.72 1.6E-05 40.8 16.0 165 226-407 39-227 (440)
308 PF12968 DUF3856: Domain of Un 96.1 0.3 6.6E-06 37.1 11.8 88 461-548 19-131 (144)
309 COG3914 Spy Predicted O-linked 96.1 1.2 2.6E-05 44.2 19.0 128 265-413 48-184 (620)
310 smart00028 TPR Tetratricopepti 96.1 0.012 2.6E-07 33.3 3.9 32 283-314 2-33 (34)
311 PF09986 DUF2225: Uncharacteri 95.9 0.18 3.8E-06 44.2 11.9 99 226-324 89-208 (214)
312 PRK13184 pknD serine/threonine 95.9 1.6 3.5E-05 47.1 21.0 99 222-321 483-591 (932)
313 PRK10941 hypothetical protein; 95.8 0.13 2.9E-06 46.6 11.2 61 349-409 193-253 (269)
314 PF13374 TPR_10: Tetratricopep 95.8 0.024 5.2E-07 34.6 4.7 31 518-548 3-33 (42)
315 PF10602 RPN7: 26S proteasome 95.8 0.19 4E-06 42.7 11.4 103 248-367 36-143 (177)
316 PRK13184 pknD serine/threonine 95.8 2.8 6.1E-05 45.4 22.3 108 163-284 481-588 (932)
317 PF12968 DUF3856: Domain of Un 95.7 0.11 2.4E-06 39.4 8.3 87 225-311 20-129 (144)
318 KOG2422 Uncharacterized conser 95.7 1.2 2.6E-05 43.9 17.3 160 223-403 247-451 (665)
319 COG4976 Predicted methyltransf 95.7 0.019 4.2E-07 49.0 4.9 56 260-315 7-62 (287)
320 COG4976 Predicted methyltransf 95.6 0.024 5.3E-07 48.4 5.1 59 347-405 5-63 (287)
321 COG3914 Spy Predicted O-linked 95.6 0.41 8.9E-06 47.2 13.9 140 232-386 49-191 (620)
322 KOG0529 Protein geranylgeranyl 95.5 0.77 1.7E-05 43.4 15.0 163 231-410 46-234 (421)
323 PRK15180 Vi polysaccharide bio 95.5 0.047 1E-06 51.9 7.1 127 222-369 297-423 (831)
324 KOG1839 Uncharacterized protei 95.4 0.2 4.2E-06 54.2 12.0 154 226-400 944-1128(1236)
325 PRK15180 Vi polysaccharide bio 95.3 0.14 3E-06 48.9 9.6 127 258-405 299-425 (831)
326 KOG3364 Membrane protein invol 95.3 0.52 1.1E-05 36.9 10.8 75 248-322 32-111 (149)
327 KOG2396 HAT (Half-A-TPR) repea 95.2 3.4 7.3E-05 40.3 28.9 96 231-326 88-184 (568)
328 TIGR02561 HrpB1_HrpK type III 95.2 0.14 3.1E-06 40.9 7.8 74 227-300 23-96 (153)
329 KOG2422 Uncharacterized conser 95.1 3.9 8.4E-05 40.6 19.5 178 134-369 249-451 (665)
330 KOG3783 Uncharacterized conser 95.1 3 6.5E-05 41.0 17.9 222 140-404 250-524 (546)
331 PF13374 TPR_10: Tetratricopep 95.0 0.057 1.2E-06 32.9 4.3 30 157-186 2-31 (42)
332 KOG3364 Membrane protein invol 95.0 0.29 6.3E-06 38.3 8.7 61 349-409 47-109 (149)
333 KOG0529 Protein geranylgeranyl 94.9 1.9 4.2E-05 40.8 15.6 139 230-377 91-235 (421)
334 KOG1310 WD40 repeat protein [G 94.8 0.11 2.3E-06 50.2 7.5 90 296-403 388-477 (758)
335 COG5191 Uncharacterized conser 94.8 0.063 1.4E-06 48.1 5.4 90 236-325 95-185 (435)
336 KOG3807 Predicted membrane pro 94.8 3.3 7.1E-05 38.0 20.6 128 144-307 205-336 (556)
337 KOG1310 WD40 repeat protein [G 94.8 0.16 3.5E-06 49.1 8.4 93 224-316 384-479 (758)
338 COG5107 RNA14 Pre-mRNA 3'-end 94.7 4.2 9.1E-05 39.1 25.9 296 236-547 30-363 (660)
339 TIGR02561 HrpB1_HrpK type III 94.7 0.64 1.4E-05 37.3 10.2 76 251-326 13-88 (153)
340 PF10602 RPN7: 26S proteasome 94.6 0.68 1.5E-05 39.3 11.1 99 282-401 36-143 (177)
341 COG5191 Uncharacterized conser 94.4 0.12 2.5E-06 46.5 6.2 87 304-411 95-182 (435)
342 COG3629 DnrI DNA-binding trans 94.4 0.42 9.2E-06 43.3 9.8 74 474-547 144-217 (280)
343 KOG1538 Uncharacterized conser 94.3 2.4 5.2E-05 42.5 15.3 21 162-182 637-657 (1081)
344 PF12862 Apc5: Anaphase-promot 94.3 0.17 3.8E-06 37.7 6.2 57 493-549 8-73 (94)
345 KOG4814 Uncharacterized conser 94.1 0.32 7E-06 48.2 8.9 88 224-311 364-457 (872)
346 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.11 2.3E-06 30.8 3.5 31 518-548 2-32 (38)
347 COG2912 Uncharacterized conser 93.9 0.49 1.1E-05 42.3 9.0 75 250-324 183-257 (269)
348 COG4649 Uncharacterized protei 93.8 3.2 7E-05 34.3 16.3 138 258-413 68-208 (221)
349 KOG1839 Uncharacterized protei 93.7 0.63 1.4E-05 50.6 11.0 168 343-548 938-1130(1236)
350 KOG4814 Uncharacterized conser 93.5 0.98 2.1E-05 45.1 11.0 102 285-401 357-458 (872)
351 PF04053 Coatomer_WDAD: Coatom 93.4 4.4 9.6E-05 40.1 15.8 103 258-398 271-374 (443)
352 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.2 4.2E-06 29.7 3.7 29 158-186 2-30 (38)
353 PF07721 TPR_4: Tetratricopept 93.0 0.12 2.6E-06 27.6 2.6 24 518-541 2-25 (26)
354 PF07721 TPR_4: Tetratricopept 93.0 0.14 2.9E-06 27.4 2.7 26 157-182 1-26 (26)
355 PF04190 DUF410: Protein of un 92.9 7.2 0.00016 35.5 16.8 125 245-385 87-242 (260)
356 PF12862 Apc5: Anaphase-promot 92.4 1.1 2.4E-05 33.4 7.9 56 258-313 8-72 (94)
357 COG3629 DnrI DNA-binding trans 92.4 0.84 1.8E-05 41.4 8.4 65 247-311 152-216 (280)
358 PF10579 Rapsyn_N: Rapsyn N-te 92.1 2.5 5.4E-05 29.8 8.5 53 253-305 11-66 (80)
359 PF07720 TPR_3: Tetratricopept 91.9 0.68 1.5E-05 27.1 4.8 32 372-403 2-35 (36)
360 PF15015 NYD-SP12_N: Spermatog 91.9 1.6 3.4E-05 41.4 9.6 78 250-327 230-310 (569)
361 PF11207 DUF2989: Protein of u 91.8 1.6 3.4E-05 37.3 8.8 71 231-302 123-198 (203)
362 PF04053 Coatomer_WDAD: Coatom 91.6 2.6 5.6E-05 41.7 11.6 72 225-309 329-400 (443)
363 PF07720 TPR_3: Tetratricopept 91.6 0.67 1.4E-05 27.1 4.6 20 251-270 4-23 (36)
364 KOG2581 26S proteasome regulat 91.4 8 0.00017 36.7 13.6 134 255-405 133-281 (493)
365 KOG1538 Uncharacterized conser 91.4 11 0.00025 38.1 15.3 79 224-308 566-658 (1081)
366 COG5159 RPN6 26S proteasome re 91.1 11 0.00025 33.9 19.2 161 224-399 13-193 (421)
367 COG2912 Uncharacterized conser 91.0 2.3 5E-05 38.2 9.5 63 488-550 186-248 (269)
368 PF11207 DUF2989: Protein of u 90.9 3.1 6.6E-05 35.6 9.7 43 226-268 152-198 (203)
369 PF15015 NYD-SP12_N: Spermatog 90.7 1.6 3.5E-05 41.3 8.5 88 255-363 183-288 (569)
370 PF10579 Rapsyn_N: Rapsyn N-te 90.7 3 6.6E-05 29.3 7.8 54 224-277 16-72 (80)
371 COG3947 Response regulator con 90.6 1.2 2.6E-05 40.0 7.3 62 486-547 282-343 (361)
372 smart00299 CLH Clathrin heavy 90.3 8.4 0.00018 31.1 14.6 119 349-529 19-137 (140)
373 PRK11619 lytic murein transgly 89.9 28 0.00061 36.5 23.9 53 492-544 321-373 (644)
374 KOG0128 RNA-binding protein SA 89.8 29 0.00062 36.5 34.7 233 133-404 123-380 (881)
375 PF10373 EST1_DNA_bind: Est1 D 89.7 1.2 2.6E-05 41.2 7.3 61 267-327 1-61 (278)
376 COG3947 Response regulator con 89.4 1.9 4E-05 38.9 7.5 60 250-309 281-340 (361)
377 KOG3807 Predicted membrane pro 89.3 18 0.00039 33.4 16.9 121 249-402 185-306 (556)
378 COG5159 RPN6 26S proteasome re 87.6 21 0.00047 32.3 14.6 193 347-548 13-237 (421)
379 KOG4279 Serine/threonine prote 87.5 4.6 0.0001 41.4 9.6 191 156-380 200-409 (1226)
380 PF10373 EST1_DNA_bind: Est1 D 86.9 2.6 5.6E-05 39.0 7.6 62 233-294 1-62 (278)
381 COG1747 Uncharacterized N-term 86.5 36 0.00078 33.7 21.3 75 250-326 68-142 (711)
382 TIGR03504 FimV_Cterm FimV C-te 86.3 1.4 3.1E-05 27.1 3.6 25 521-545 3-27 (44)
383 KOG4014 Uncharacterized conser 86.0 19 0.00042 30.2 14.8 149 154-327 31-211 (248)
384 PF09670 Cas_Cas02710: CRISPR- 85.9 22 0.00048 34.5 13.4 62 250-311 133-198 (379)
385 COG1747 Uncharacterized N-term 85.8 39 0.00085 33.5 20.8 60 347-406 215-294 (711)
386 PF00244 14-3-3: 14-3-3 protei 85.8 26 0.00056 31.4 14.7 59 344-402 8-68 (236)
387 smart00386 HAT HAT (Half-A-TPR 85.6 2.2 4.7E-05 23.7 4.2 31 497-527 1-31 (33)
388 PF04190 DUF410: Protein of un 85.4 29 0.00063 31.7 21.8 82 280-400 88-170 (260)
389 KOG0276 Vesicle coat complex C 85.2 9.6 0.00021 38.2 10.3 79 97-186 617-695 (794)
390 KOG2581 26S proteasome regulat 85.2 26 0.00056 33.5 12.6 63 453-515 211-279 (493)
391 KOG2063 Vacuolar assembly/sort 84.7 63 0.0014 35.0 18.8 176 284-480 506-713 (877)
392 smart00386 HAT HAT (Half-A-TPR 84.5 3.3 7.2E-05 22.9 4.6 29 296-324 1-29 (33)
393 TIGR03504 FimV_Cterm FimV C-te 84.4 2.2 4.7E-05 26.3 3.7 26 285-310 2-27 (44)
394 PF12753 Nro1: Nuclear pore co 84.1 35 0.00076 32.7 13.1 49 499-549 334-387 (404)
395 COG5536 BET4 Protein prenyltra 84.1 27 0.00058 31.6 11.6 166 231-411 49-233 (328)
396 PF12854 PPR_1: PPR repeat 83.9 2.6 5.7E-05 24.2 3.8 29 155-183 5-33 (34)
397 KOG0546 HSP90 co-chaperone CPR 83.5 1.7 3.8E-05 40.2 4.4 77 249-325 276-352 (372)
398 PF10255 Paf67: RNA polymerase 83.3 19 0.00042 34.9 11.4 59 453-511 124-192 (404)
399 PF12739 TRAPPC-Trs85: ER-Golg 82.9 51 0.0011 32.6 15.0 28 523-550 376-403 (414)
400 COG4455 ImpE Protein of avirul 82.8 4.1 9E-05 35.1 6.0 56 226-281 13-68 (273)
401 PF12739 TRAPPC-Trs85: ER-Golg 82.5 53 0.0012 32.5 15.9 113 159-277 210-329 (414)
402 KOG1463 26S proteasome regulat 82.4 43 0.00093 31.3 15.3 198 343-549 10-241 (411)
403 PF11817 Foie-gras_1: Foie gra 82.0 14 0.00031 33.4 9.7 80 230-309 154-245 (247)
404 PF12854 PPR_1: PPR repeat 81.9 3.4 7.3E-05 23.7 3.8 27 516-542 6-32 (34)
405 KOG4014 Uncharacterized conser 81.7 31 0.00066 29.1 15.0 166 228-400 49-233 (248)
406 KOG0687 26S proteasome regulat 81.5 43 0.00092 31.1 12.1 128 134-312 79-211 (393)
407 PF09205 DUF1955: Domain of un 81.1 8.9 0.00019 30.2 6.7 53 134-186 97-149 (161)
408 PF13041 PPR_2: PPR repeat fam 80.8 7 0.00015 24.7 5.4 31 156-186 2-32 (50)
409 PF10255 Paf67: RNA polymerase 80.7 3.6 7.7E-05 39.7 5.6 60 250-310 124-192 (404)
410 cd02680 MIT_calpain7_2 MIT: do 79.6 3.8 8.2E-05 28.8 4.0 21 492-512 15-35 (75)
411 cd02682 MIT_AAA_Arch MIT: doma 79.5 11 0.00025 26.4 6.3 49 453-526 8-56 (75)
412 cd02682 MIT_AAA_Arch MIT: doma 79.2 12 0.00026 26.3 6.3 27 160-186 9-35 (75)
413 PF09670 Cas_Cas02710: CRISPR- 78.2 23 0.00049 34.5 10.3 54 224-277 141-198 (379)
414 PF11846 DUF3366: Domain of un 77.7 9.1 0.0002 33.1 6.9 49 499-548 127-175 (193)
415 PF11817 Foie-gras_1: Foie gra 77.4 56 0.0012 29.6 15.0 56 343-398 184-245 (247)
416 PF13041 PPR_2: PPR repeat fam 77.3 13 0.00029 23.4 5.9 29 249-277 4-32 (50)
417 KOG0546 HSP90 co-chaperone CPR 76.5 4.4 9.6E-05 37.7 4.6 65 349-413 287-351 (372)
418 KOG2114 Vacuolar assembly/sort 75.4 64 0.0014 34.2 12.6 51 349-400 346-397 (933)
419 cd02680 MIT_calpain7_2 MIT: do 75.1 5.7 0.00012 27.9 3.8 18 226-243 18-35 (75)
420 COG5536 BET4 Protein prenyltra 74.5 19 0.00042 32.4 7.8 138 231-380 91-236 (328)
421 PF01535 PPR: PPR repeat; Int 74.1 5.6 0.00012 21.7 3.2 25 251-275 3-27 (31)
422 cd02679 MIT_spastin MIT: domai 73.8 8.8 0.00019 27.3 4.6 20 492-511 17-36 (79)
423 PF14863 Alkyl_sulf_dimr: Alky 73.3 13 0.00028 30.1 6.0 50 248-297 70-119 (141)
424 KOG0276 Vesicle coat complex C 73.0 21 0.00045 36.0 8.3 48 224-276 647-694 (794)
425 PF01535 PPR: PPR repeat; Int 72.8 6.1 0.00013 21.5 3.1 26 520-545 3-28 (31)
426 cd02681 MIT_calpain7_1 MIT: do 72.3 7.3 0.00016 27.5 3.9 17 226-242 18-34 (76)
427 KOG0686 COP9 signalosome, subu 71.8 30 0.00065 33.1 8.7 27 373-399 231-257 (466)
428 KOG1497 COP9 signalosome, subu 71.3 88 0.0019 29.1 11.6 100 248-365 103-212 (399)
429 KOG4521 Nuclear pore complex, 71.2 1.6E+02 0.0035 32.8 14.6 176 371-547 920-1133(1480)
430 KOG0687 26S proteasome regulat 71.1 91 0.002 29.1 12.1 105 247-369 103-213 (393)
431 PF09797 NatB_MDM20: N-acetylt 69.2 27 0.00058 33.9 8.5 49 226-274 195-243 (365)
432 KOG4279 Serine/threonine prote 69.2 53 0.0011 34.3 10.3 106 281-405 200-321 (1226)
433 cd02677 MIT_SNX15 MIT: domain 68.9 8.2 0.00018 27.2 3.6 22 491-512 14-35 (75)
434 PF11846 DUF3366: Domain of un 68.6 19 0.00042 31.0 6.7 50 353-403 127-176 (193)
435 KOG0128 RNA-binding protein SA 67.9 1.7E+02 0.0038 31.1 28.6 233 144-413 100-354 (881)
436 PF14863 Alkyl_sulf_dimr: Alky 67.6 16 0.00034 29.6 5.4 50 486-535 73-122 (141)
437 TIGR00756 PPR pentatricopeptid 67.5 11 0.00024 21.0 3.5 28 159-186 2-29 (35)
438 TIGR00756 PPR pentatricopeptid 67.2 12 0.00026 20.8 3.7 27 520-546 3-29 (35)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 66.2 64 0.0014 25.5 14.5 43 232-274 81-125 (126)
440 COG4941 Predicted RNA polymera 65.7 1.2E+02 0.0026 28.5 16.6 166 139-323 212-406 (415)
441 PF04212 MIT: MIT (microtubule 64.9 14 0.0003 25.5 4.1 21 489-509 11-31 (69)
442 KOG2114 Vacuolar assembly/sort 64.9 2E+02 0.0044 30.8 22.2 55 492-549 714-768 (933)
443 PF10952 DUF2753: Protein of u 64.8 40 0.00086 26.3 6.6 66 251-316 4-88 (140)
444 COG5187 RPN7 26S proteasome re 64.7 1.2E+02 0.0025 27.9 12.0 104 248-369 115-224 (412)
445 PF09797 NatB_MDM20: N-acetylt 63.8 40 0.00088 32.6 8.6 47 262-308 197-243 (365)
446 cd02656 MIT MIT: domain contai 63.6 15 0.00032 25.8 4.2 23 490-512 13-35 (75)
447 smart00299 CLH Clathrin heavy 63.2 77 0.0017 25.4 12.6 47 259-306 18-64 (140)
448 cd02681 MIT_calpain7_1 MIT: do 62.7 20 0.00044 25.3 4.5 27 486-512 9-35 (76)
449 PF13812 PPR_3: Pentatricopept 62.5 19 0.00041 20.0 3.9 25 251-275 4-28 (34)
450 PHA02537 M terminase endonucle 62.5 13 0.00028 32.8 4.4 93 224-316 93-212 (230)
451 KOG0686 COP9 signalosome, subu 62.3 75 0.0016 30.6 9.3 64 248-311 150-216 (466)
452 COG4455 ImpE Protein of avirul 61.9 1.1E+02 0.0024 26.8 13.7 64 255-318 8-71 (273)
453 TIGR03362 VI_chp_7 type VI sec 61.4 1.4E+02 0.0031 27.9 16.4 141 260-401 111-280 (301)
454 PHA02537 M terminase endonucle 61.4 34 0.00074 30.3 6.7 112 159-281 85-211 (230)
455 cd02679 MIT_spastin MIT: domai 59.5 15 0.00031 26.2 3.4 16 171-186 3-18 (79)
456 TIGR03362 VI_chp_7 type VI sec 58.2 1.6E+02 0.0035 27.5 15.9 166 349-551 111-284 (301)
457 cd02683 MIT_1 MIT: domain cont 58.1 25 0.00054 24.9 4.4 24 488-511 11-34 (77)
458 cd02684 MIT_2 MIT: domain cont 58.1 19 0.0004 25.4 3.8 15 173-187 3-17 (75)
459 PF04097 Nic96: Nup93/Nic96; 57.9 2.5E+02 0.0054 29.6 16.6 23 520-542 506-530 (613)
460 PF10952 DUF2753: Protein of u 57.9 52 0.0011 25.6 6.2 30 159-188 3-32 (140)
461 KOG0889 Histone acetyltransfer 56.8 5.4E+02 0.012 33.1 25.1 67 483-549 2812-2886(3550)
462 PF12583 TPPII_N: Tripeptidyl 56.4 55 0.0012 25.8 6.2 38 492-529 85-122 (139)
463 cd02678 MIT_VPS4 MIT: domain c 56.2 21 0.00046 25.1 3.9 14 173-186 3-16 (75)
464 KOG4151 Myosin assembly protei 55.9 39 0.00085 35.3 7.0 108 253-381 58-171 (748)
465 KOG0292 Vesicle coat complex C 55.1 1.7E+02 0.0036 31.6 11.1 119 160-284 994-1120(1202)
466 smart00671 SEL1 Sel1-like repe 54.9 25 0.00053 19.9 3.5 28 518-545 2-33 (36)
467 cd02677 MIT_SNX15 MIT: domain 54.6 24 0.00053 24.8 3.9 15 173-187 3-17 (75)
468 PF08238 Sel1: Sel1 repeat; I 54.2 27 0.00058 20.3 3.6 28 518-545 2-36 (39)
469 PRK15490 Vi polysaccharide bio 53.8 69 0.0015 32.9 8.2 78 227-306 21-98 (578)
470 KOG1938 Protein with predicted 53.4 1.6E+02 0.0035 32.0 10.9 178 224-403 186-387 (960)
471 PF08311 Mad3_BUB1_I: Mad3/BUB 52.3 1.2E+02 0.0025 24.1 9.3 44 501-544 81-126 (126)
472 PF04212 MIT: MIT (microtubule 51.7 36 0.00077 23.4 4.4 17 259-275 16-32 (69)
473 smart00745 MIT Microtubule Int 50.8 39 0.00085 23.8 4.6 21 490-510 15-35 (77)
474 PF08626 TRAPPC9-Trs120: Trans 50.6 2.3E+02 0.0049 32.8 12.7 150 156-311 241-474 (1185)
475 PF12753 Nro1: Nuclear pore co 50.5 34 0.00075 32.7 5.2 49 465-513 332-392 (404)
476 PRK11619 lytic murein transgly 50.4 3.4E+02 0.0073 28.8 28.8 140 349-507 324-463 (644)
477 smart00777 Mad3_BUB1_I Mad3/BU 49.8 1.3E+02 0.0028 23.8 10.0 59 243-307 64-124 (125)
478 smart00745 MIT Microtubule Int 49.2 30 0.00065 24.4 3.8 14 173-186 5-18 (77)
479 COG4259 Uncharacterized protei 49.1 70 0.0015 23.8 5.4 34 517-550 72-105 (121)
480 cd00280 TRFH Telomeric Repeat 48.9 1.7E+02 0.0037 24.9 8.8 68 230-298 85-160 (200)
481 COG5187 RPN7 26S proteasome re 48.4 2.2E+02 0.0048 26.2 15.7 124 263-404 90-225 (412)
482 TIGR02710 CRISPR-associated pr 47.8 2.7E+02 0.0059 27.0 13.9 54 254-307 136-196 (380)
483 smart00777 Mad3_BUB1_I Mad3/BU 47.6 1.1E+02 0.0024 24.2 6.9 28 246-273 97-124 (125)
484 COG4259 Uncharacterized protei 47.4 96 0.0021 23.1 5.9 56 135-190 49-105 (121)
485 cd02678 MIT_VPS4 MIT: domain c 47.4 49 0.0011 23.2 4.6 20 491-510 14-33 (75)
486 COG3014 Uncharacterized protei 46.8 2.6E+02 0.0056 26.5 11.9 76 236-311 43-154 (449)
487 KOG4151 Myosin assembly protei 45.6 38 0.00081 35.5 5.0 111 163-290 59-169 (748)
488 PF08626 TRAPPC9-Trs120: Trans 45.5 2.4E+02 0.0052 32.6 11.9 82 466-547 360-475 (1185)
489 PF13226 DUF4034: Domain of un 45.4 2.5E+02 0.0054 25.9 11.3 88 300-387 61-149 (277)
490 PF05053 Menin: Menin; InterP 45.4 1.1E+02 0.0024 31.0 7.9 63 248-310 277-346 (618)
491 PF02184 HAT: HAT (Half-A-TPR) 44.6 53 0.0012 18.6 3.3 24 353-377 3-26 (32)
492 KOG2561 Adaptor protein NUB1, 43.6 1.8E+02 0.0039 28.5 8.7 99 251-365 166-295 (568)
493 PF09205 DUF1955: Domain of un 43.2 1.7E+02 0.0037 23.4 11.9 54 492-545 95-148 (161)
494 COG3014 Uncharacterized protei 42.4 3.1E+02 0.0066 26.0 12.8 29 372-400 126-154 (449)
495 KOG4521 Nuclear pore complex, 42.3 2.8E+02 0.0061 31.1 10.7 120 248-388 920-1071(1480)
496 PF13226 DUF4034: Domain of un 42.0 2.8E+02 0.0061 25.6 11.4 68 232-299 61-150 (277)
497 cd02684 MIT_2 MIT: domain cont 41.8 65 0.0014 22.7 4.4 19 492-510 15-33 (75)
498 PF07219 HemY_N: HemY protein 41.8 1.5E+02 0.0032 22.6 6.8 50 248-297 59-108 (108)
499 TIGR02710 CRISPR-associated pr 41.2 3.5E+02 0.0075 26.3 13.7 28 376-403 135-162 (380)
500 PF12921 ATP13: Mitochondrial 40.8 1.8E+02 0.0039 23.0 7.4 67 482-548 1-83 (126)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-44 Score=331.58 Aligned_cols=363 Identities=19% Similarity=0.205 Sum_probs=218.6
Q ss_pred HHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCc
Q 008818 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 173 (552)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~ 173 (552)
+..+...|+...++ ..|..+|++.|+...+|..+|.+ ....++.+.+-+++..+++++|....+...+|.++..+|+.
T Consensus 123 aN~~kerg~~~~al-~~y~~aiel~p~fida~inla~a-l~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 123 ANILKERGQLQDAL-ALYRAAIELKPKFIDAYINLAAA-LVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHHhchHHHHH-HHHHHHHhcCchhhHHHhhHHHH-HHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence 33444455555554 55666666666666666666666 56666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHH
Q 008818 174 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 253 (552)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 253 (552)
.+|..+|.+|++..| ..+.++..+|-. ...+|+.-.|+..|++++.++|+..++|.+
T Consensus 201 ~ea~~cYlkAi~~qp-------------------~fAiawsnLg~~----f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 201 EEAKACYLKAIETQP-------------------CFAIAWSNLGCV----FNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred chhHHHHHHHHhhCC-------------------ceeeeehhcchH----HhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 666666666666532 122222333332 344455566666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccc
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 333 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 333 (552)
||.+|-..+.|++|+.+|.+|+.+.|+++.++-++|.+|..+|..+-|+..|++++++.|+.++++.+++..+.
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk------ 331 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK------ 331 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH------
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
..|+..+|..+|++++.+.|..+++.++||.+|..+|++++|...|+++++..|....
T Consensus 332 ---------------d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa------- 389 (966)
T KOG4626|consen 332 ---------------DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA------- 389 (966)
T ss_pred ---------------hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh-------
Confidence 5566666666666666666666666666666666666666666666666666666554
Q ss_pred HHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHH
Q 008818 414 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESA 491 (552)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~ 491 (552)
++.++|.+|..+|++++|+.+|+.++. |.-.+++.++|.
T Consensus 390 ---------------------------------------a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 390 ---------------------------------------AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred ---------------------------------------hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 445555555555555555555555433 333345555555
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.|...|+.+.|+.+|.+|+.++|..++++.+||.+|...|+..+|+..|+++|.+-|
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 555555555555555555555555555555555555555555555555555555544
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-41 Score=310.40 Aligned_cols=399 Identities=18% Similarity=0.196 Sum_probs=323.9
Q ss_pred hhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 008818 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 171 (552)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g 171 (552)
.-+..+++-|++-.+. +...-.-..+|.+.......+.. ......++.....-..+++.+|...++|-++|+++...|
T Consensus 53 ~lah~~yq~gd~~~a~-~h~nmv~~~d~t~~~~llll~ai-~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAE-KHCNMVGQEDPTNTERLLLLSAI-FFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHH-HHHhHhhccCCCcccceeeehhh-hhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 3455667777766663 33344445566666666666666 666667777777777778888888889988999999999
Q ss_pred CchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHH
Q 008818 172 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVW 251 (552)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 251 (552)
++++|+..|+.++++.|+ + +..|.+++.++... |+.+.|...|..+++++|....+.
T Consensus 131 ~~~~al~~y~~aiel~p~---------f---ida~inla~al~~~-----------~~~~~a~~~~~~alqlnP~l~ca~ 187 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK---------F---IDAYINLAAALVTQ-----------GDLELAVQCFFEALQLNPDLYCAR 187 (966)
T ss_pred hHHHHHHHHHHHHhcCch---------h---hHHHhhHHHHHHhc-----------CCCcccHHHHHHHHhcCcchhhhh
Confidence 999999999999888543 2 45566666664444 444888888889999998888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008818 252 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 331 (552)
Q Consensus 252 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 331 (552)
..+|.++-..|+..+|..+|.+|++..|..+.+|.+||.++...|+...|+..|+++++++|+..++++++|.+|.
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~k---- 263 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYK---- 263 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHH----
Confidence 8888888888999999999999998888888888999988888899999999999999999988888888888887
Q ss_pred ccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 332 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
..+.++.|+.+|.+++...|.++.++-++|.+|+.+|..+-|+..|++++++.|+.+.++.++
T Consensus 264 -----------------e~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 264 -----------------EARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred -----------------HHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 788888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhH
Q 008818 412 AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGE 489 (552)
Q Consensus 412 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~l 489 (552)
+...-. ..... +............+..+++..++|.++.++|++++|...|.+++. +.-..++.+|
T Consensus 327 anALkd-~G~V~-----------ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNL 394 (966)
T KOG4626|consen 327 ANALKD-KGSVT-----------EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNL 394 (966)
T ss_pred HHHHHh-ccchH-----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhH
Confidence 764222 11111 122223333445677889999999999999999999999999776 4455778899
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 490 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
|.+|.+.|++++|+.+|+.++.+.|..++++.++|..|..+|+...|+.+|.+|+.+-|
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999998765
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-34 Score=298.78 Aligned_cols=387 Identities=16% Similarity=0.124 Sum_probs=314.3
Q ss_pred hhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 008818 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 171 (552)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g 171 (552)
..|..+++.|++..++ ..|.++|++.|+ ...+..+|.+ +...+.++.+...+.++++.+|++..+|+.+|.+|..+|
T Consensus 132 ~~G~~~~~~~~~~~Ai-~~y~~al~~~p~-~~~~~n~a~~-~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAI-KLYSKAIECKPD-PVYYSNRAAC-HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCc-hHHHHHHHHH-HHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 4577788888888887 999999999996 5567778888 888899999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhccccc-------------------------cchhHHHHHHHhhhhc-------------ccc
Q 008818 172 QPLKAVSSYEKAEEILLRCEADI-------------------------ARPELLSLVQIHHAQC-------------LLP 213 (552)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~-------------------------~~~~~~~~~~~~~~~~-------------~~~ 213 (552)
++++|+..|..++...+...... ..+....... +.... ...
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhcccccc
Confidence 99999999987765432110000 0000000000 00000 000
Q ss_pred cccCCCccc------cccCchhHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 008818 214 ESSGDNSLD------KELEPEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 284 (552)
Q Consensus 214 ~~~g~~~~~------~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 284 (552)
..++..... .....+++++|+..|+++++. .|....++..+|.++..+|++++|+..|++++.++|++..+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 367 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS 367 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 001111000 001235789999999999976 47888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 285 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++. ..|++++|+.+|++++
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF---------------------IKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888 8999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCC
Q 008818 365 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 444 (552)
Q Consensus 365 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (552)
+++|++..++..+|.++..+|++++|+..|++++...|+++
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~--------------------------------------- 467 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP--------------------------------------- 467 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---------------------------------------
Confidence 99999999999999999999999999999999999988764
Q ss_pred CCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhh--h------hhhhHHHHHH-hhhhHHHHHHHHHHHHHhCCC
Q 008818 445 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE--C------AGAGESAFLD-QASAVNVAKECLLAALKADPK 515 (552)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~------~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~ 515 (552)
.++..+|.++...|++++|+..|.+++...+. . .+++.+..+. ..|++++|+..|+++++++|+
T Consensus 468 -------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 468 -------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45667788888999999999999997653322 1 1233333343 469999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 516 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 516 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
+..++..+|.++...|++++|+.+|++++++..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998653
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5e-32 Score=296.18 Aligned_cols=410 Identities=22% Similarity=0.190 Sum_probs=297.6
Q ss_pred HHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchH
Q 008818 96 KINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 175 (552)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 175 (552)
.+...|+...++ ..|.++++..|.....+..+|.. ....+.++.+...+++++..+|.+..++..++.++...|++++
T Consensus 474 ~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAR-EAFEKALSIEPDFFPAAANLARI-DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHH-HHHHHHHhhCCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH
Confidence 344444444443 45555555555555555554444 4455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHH
Q 008818 176 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 255 (552)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 255 (552)
|+..|++++...|... ..+..++.. +...|++++|+..+++++...|.++.+|..+|
T Consensus 552 A~~~~~~~~~~~~~~~------------~~~~~l~~~-----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 608 (899)
T TIGR02917 552 AVAWLEKAAELNPQEI------------EPALALAQY-----------YLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608 (899)
T ss_pred HHHHHHHHHHhCccch------------hHHHHHHHH-----------HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5555555555533210 111122222 44567779999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc
Q 008818 256 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 335 (552)
Q Consensus 256 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 335 (552)
.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++...+..++.++........+
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888744322111
Q ss_pred -------------ccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008818 336 -------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 336 -------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 402 (552)
....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..+++++..+|
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 767 (899)
T TIGR02917 689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHP 767 (899)
T ss_pred HHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23334456778888888888888888888888876 6677788888888888888888888888888
Q ss_pred CCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--c
Q 008818 403 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--K 480 (552)
Q Consensus 403 ~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~ 480 (552)
++...++.++...... .....+...+...+ ...|.++.++..++.++...|+ .+|+..+.+.+. +
T Consensus 768 ~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 768 NDAVLRTALAELYLAQ--------KDYDKAIKHYRTVV----KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred CCHHHHHHHHHHHHHC--------cCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 8877777666544422 11222222232332 2346678888888988888888 778888888654 4
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008818 481 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 544 (552)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 544 (552)
.+...+..+|.++...|++++|+.+|+++++.+|.++.+++.++.++...|++++|++++++++
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5556677888889999999999999999999999889999999999999999999999988876
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.3e-31 Score=288.15 Aligned_cols=419 Identities=19% Similarity=0.173 Sum_probs=254.0
Q ss_pred hHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 008818 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 172 (552)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~ 172 (552)
.+..+.+.|+...++ ..|.++++..|+....+..+|.. ....+.++.+...+.++++.+|+...++..++..+...|+
T Consensus 369 l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAA-EYLAKATELDPENAAARTQLGIS-KLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHH-HHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 466677777777775 77777777777777666666666 5666666666666666666666666666666666666666
Q ss_pred chHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHH
Q 008818 173 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 252 (552)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 252 (552)
+++|+..+++.+...|.+ + ..+..++.++...| ++++|+..|+++++.+|++..++.
T Consensus 447 ~~~A~~~~~~~~~~~~~~------~------~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~ 503 (899)
T TIGR02917 447 FDKALAAAKKLEKKQPDN------A------SLHNLLGAIYLGKG-----------DLAKAREAFEKALSIEPDFFPAAA 503 (899)
T ss_pred HHHHHHHHHHHHHhCCCC------c------HHHHHHHHHHHhCC-----------CHHHHHHHHHHHHhhCCCcHHHHH
Confidence 666666666665543321 0 11223333333222 235566666666555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 332 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 332 (552)
.+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...+..
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 56666655666666666666665555555555555555555556666666666555555555555555555554433211
Q ss_pred ccc-------------ccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 333 VLA-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 333 ~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
..+ ....+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 110 1223344455555889999999999999999998899999999999999999999999999999
Q ss_pred hCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc
Q 008818 400 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 479 (552)
Q Consensus 400 ~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 479 (552)
.+|++...+..++....... ....+. ..+.......+..+..+..+|.++...|++++|+..|...+.
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~--------~~~~A~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAK--------RTESAK----KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcC--------CHHHHH----HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99988877776655433211 011111 111111122344555666666666666666666666666443
Q ss_pred chhh-hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 480 KMEE-CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 480 ~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
..+. ..++.++.++...|++++|+..++++++..|++..+++.+|.+|...|++++|+.+|+++++..|
T Consensus 732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 2211 34445556666666666666666666666666666666666666666666666666666655544
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.6e-31 Score=289.88 Aligned_cols=393 Identities=17% Similarity=0.137 Sum_probs=305.0
Q ss_pred CCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHH--
Q 008818 128 LGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQI-- 205 (552)
Q Consensus 128 ~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-- 205 (552)
+|.. ....+.++.|...++++++.+|+++.++..+|.+|.+.|++++|+.+|+++++.+|+................
T Consensus 275 ~G~~-~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLA-AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHH-HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3555 6677899999999999999999999999999999999999999999999999997764321100011111111
Q ss_pred hhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 008818 206 HHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI 285 (552)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 285 (552)
....+.+ ++..|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++|++..++
T Consensus 354 ~~~~g~~-----------~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 354 LIQQGDA-----------ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHHHH-----------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 1112222 45678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 286 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
..++.+|. .+++++|+.++++.....+....... ..+. ...+..+|.++...|++++|+..|+++++
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~---~~l~---------~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIE---RSLQ---------NDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHH---HHhh---------hhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999985 46789999888765433221110000 0000 00111235555699999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-----hHhhccC---------chHHHh-
Q 008818 366 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK-----DAERSQE---------PTEQLS- 430 (552)
Q Consensus 366 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~-----~~~~~~~---------~~~~~~- 430 (552)
++|+++.+++.+|.+|...|++++|+..|++++..+|+++..++.++..... ++..... ....+.
T Consensus 490 ~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 490 LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 9999999999999999999999999999999999999999888776653221 0000000 000000
Q ss_pred ---------H--------HHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhh--cchhhhhhhhHHH
Q 008818 431 ---------W--------AGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESA 491 (552)
Q Consensus 431 ---------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~la~ 491 (552)
. ........+. ..|.++..+..+|.++...|++++|+..|++.+ .|.+..+++.++.
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~ 645 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIE 645 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0 0111222233 356777889999999999999999999999966 4667788999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
++...|++++|+..|+++++..|+++.++..+|.++...|++++|+++|++++...+.
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 9999999999999999999999999999999999999999999999999999987643
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.1e-30 Score=286.05 Aligned_cols=415 Identities=14% Similarity=0.136 Sum_probs=309.9
Q ss_pred hHHHHhhhchhhHhhhhhhhhhhhhCCCCccc-cccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 008818 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGD-QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 171 (552)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~-~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g 171 (552)
.+..+...|+...++ ..|+++++..|..... ..+.... ....+..+.|...|+++++.+|+++.++..+|.+++..|
T Consensus 118 ~A~ll~~~g~~~eA~-~~~~~~l~~~p~~~~la~~y~~~~-~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEAL-ASYDKLFNGAPPELDLAVEYWRLV-AKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHccCCCCChHHHHHHHHHH-hhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 345567778887776 8888988887775431 1111111 223477889999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhccc-----------cccchhHHHHHHH----h----------hhhcc----------ccccc
Q 008818 172 QPLKAVSSYEKAEEILLRCEA-----------DIARPELLSLVQI----H----------HAQCL----------LPESS 216 (552)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~~~~~~~----~----------~~~~~----------~~~~~ 216 (552)
++++|+..+++++...+.... ....+........ + ..+.. .....
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 999999999998764221100 0000000000000 0 00000 00011
Q ss_pred CCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------------
Q 008818 217 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD------------- 283 (552)
Q Consensus 217 g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------- 283 (552)
|.. ++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|++..
T Consensus 276 G~~----~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 276 GLA----AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHH----HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 222 567789999999999999999999999999999999999999999999999999997643
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHH
Q 008818 284 -CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 362 (552)
Q Consensus 284 -~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 362 (552)
....+|.++...|++++|+..|++++.++|++..++..+|.++. ..|++++|+..|++
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~---------------------~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM---------------------ARKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHH
Confidence 22455888999999999999999999999999999999999888 89999999999999
Q ss_pred HHhcCCCcHHHHHHHHH------------------------------------------HHHHcCChHHHHHHHHHHHhh
Q 008818 363 ALKADPKAAHIWANLAN------------------------------------------AYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 363 al~~~p~~~~~~~~la~------------------------------------------~~~~~~~~~~A~~~~~~al~~ 400 (552)
+++++|++..++..++. ++...|++++|+..|++++++
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998776655544 445679999999999999999
Q ss_pred CCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHH-------------------------
Q 008818 401 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA------------------------- 455 (552)
Q Consensus 401 ~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 455 (552)
+|+++.+++.++....... ....+...+...+. ..|.++..++
T Consensus 491 ~P~~~~~~~~LA~~~~~~G--------~~~~A~~~l~~al~----~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 491 DPGSVWLTYRLAQDLRQAG--------QRSQADALMRRLAQ----QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA 558 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch
Confidence 9999988888776543311 11111111111111 1223333333
Q ss_pred -------------------hHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Q 008818 456 -------------------GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 516 (552)
Q Consensus 456 -------------------~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (552)
.++..+...|++++|+..++ ..+.+...++.+|.++.+.|++++|+..|+++++.+|++
T Consensus 559 ~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~ 636 (1157)
T PRK11447 559 QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN 636 (1157)
T ss_pred hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34555556666666666655 234555678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 517 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 517 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
+.++..+|.+|...|++++|++.|+++++..+
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999887654
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.2e-30 Score=262.91 Aligned_cols=324 Identities=11% Similarity=0.028 Sum_probs=207.0
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
....+.+..+...+..++...|+++.+++.+|.+....|++++|+..|+++++.+|+.. .++..++.+
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------------~a~~~la~~ 119 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------------EDVLLVASV 119 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777765431 122333333
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+++.++..++ .+
T Consensus 120 -----------l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l 187 (656)
T PRK15174 120 -----------LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SF 187 (656)
T ss_pred -----------HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HH
Confidence 234455577777777777777777777777777777777777777777777777777777666554 36
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH
Q 008818 293 FQSGDMEQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 371 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (552)
...|++++|+..+++++..+|.. ......++.++. ..|++++|+..|++++..+|+++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~---------------------~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC---------------------AVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCCH
Confidence 67777777777777777766533 222233344444 67777777777777777777777
Q ss_pred HHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCC
Q 008818 372 HIWANLANAYYLTGDHRS----SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 447 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (552)
.++..+|.++...|++++ |+..|++++.++|++..
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~----------------------------------------- 285 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR----------------------------------------- 285 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH-----------------------------------------
Confidence 777777777777777775 67777777777776543
Q ss_pred CCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 008818 448 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 525 (552)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 525 (552)
++..+|.++...|++++|+..+++.+. +....++..+|.++...|++++|+..|++++..+|++...+..+|.
T Consensus 286 -----a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 286 -----IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344444455555555555555555332 3333444455555555555555555555555555555544444555
Q ss_pred HHHHcCChhHHHHHHHHHHHHh
Q 008818 526 AYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~l~ 547 (552)
++...|++++|+..|++++++.
T Consensus 361 al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC
Confidence 5555555555555555555543
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=9.4e-30 Score=262.25 Aligned_cols=344 Identities=15% Similarity=0.088 Sum_probs=275.0
Q ss_pred hHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHH---------------------
Q 008818 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVAR--------------------- 151 (552)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~--------------------- 151 (552)
.+.++.++|+...++ ..++++|+++|+....+..+|.+ ....+.++.|...+..+..
T Consensus 166 ~a~~~~~l~~~~~Ai-~~~~~al~l~p~~~~a~~~~a~a-~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 243 (615)
T TIGR00990 166 RAACHNALGDWEKVV-EDTTAALELDPDYSKALNRRANA-YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFA 243 (615)
T ss_pred HHHHHHHhCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 455567777777776 88899999999999999999888 7777777777665544332
Q ss_pred ---------hCCCChHHHHHHHHHH---------------------------------H---HcCCchHHHHHHHHHHHH
Q 008818 152 ---------KMPKNAHAHFLLGLMY---------------------------------Q---RLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 152 ---------~~p~~~~~~~~lg~~~---------------------------------~---~~g~~~~A~~~~~~al~~ 186 (552)
..|.+...+..+|..+ . ..+++++|+..|++++..
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 244 ESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 2333322222222221 1 125788999999999876
Q ss_pred HhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHH
Q 008818 187 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS 266 (552)
Q Consensus 187 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 266 (552)
... .| ....++..+|.++ +..|++++|+..|+++++.+|++..+|..+|.++...|++++
T Consensus 324 ~~~------~~---~~a~a~~~lg~~~-----------~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 324 GKL------GE---KEAIALNLRGTFK-----------CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred CCC------Ch---hhHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 310 11 2234455555554 455666999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchh
Q 008818 267 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 346 (552)
Q Consensus 267 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (552)
|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++...+..+|.++.
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~------------------- 444 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY------------------- 444 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCch
Q 008818 347 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 426 (552)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~ 426 (552)
..|++++|+..|+++++..|+++.++..+|.++..+|++++|+..|++++.+.|++...+.....
T Consensus 445 --~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~------------- 509 (615)
T TIGR00990 445 --KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP------------- 509 (615)
T ss_pred --HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH-------------
Confidence 89999999999999999999999999999999999999999999999999999976543322211
Q ss_pred HHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHH
Q 008818 427 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKE 504 (552)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~ 504 (552)
.+...+..+...|++++|+..+.+++. +....++..+|.++.+.|++++|+.
T Consensus 510 --------------------------l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 510 --------------------------LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred --------------------------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 111122233346899999999998654 4555678899999999999999999
Q ss_pred HHHHHHHhCCCcHH
Q 008818 505 CLLAALKADPKAAH 518 (552)
Q Consensus 505 ~~~~al~~~p~~~~ 518 (552)
+|++++++.+...+
T Consensus 564 ~~e~A~~l~~~~~e 577 (615)
T TIGR00990 564 LFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhccHHH
Confidence 99999999887554
No 10
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=9.3e-30 Score=230.81 Aligned_cols=389 Identities=16% Similarity=0.101 Sum_probs=263.2
Q ss_pred chhhhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008818 89 VAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQ 168 (552)
Q Consensus 89 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~ 168 (552)
.....|+.+++-|++..++ ..|+.||++.|+....+..++.+ +..-++|+...+...++++++|+...+++.++.++.
T Consensus 117 ~lK~~GN~~f~~kkY~eAI-kyY~~AI~l~p~epiFYsNraAc-Y~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAI-KYYTQAIELCPDEPIFYSNRAAC-YESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHhhhhhhhhcccHHHHH-HHHHHHHhcCCCCchhhhhHHHH-HHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 3456788899999999997 99999999999998888888888 889999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHHHHhhc---------------------------cccccchhHHHHHHHhhhhc----cc-cccc
Q 008818 169 RLGQPLKAVSSYEKAEEILLRC---------------------------EADIARPELLSLVQIHHAQC----LL-PESS 216 (552)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~---------------------------~~~~~~~~~~~~~~~~~~~~----~~-~~~~ 216 (552)
.+|++++|+....-..-. .+- ...+..|.... +..++..- .. ....
T Consensus 195 ~lg~~~eal~D~tv~ci~-~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f-i~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCIL-EGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF-IASYFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHh-hhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH-HHHHHhhccccccccccCC
Confidence 999999988655432111 000 00001111100 00000000 00 0000
Q ss_pred CC---Ccc---cccc---CchhHHHHHHHHHHHHhcC----cch---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 217 GD---NSL---DKEL---EPEELEEILSKLKESMQSD----TRQ---------AVVWNTLGLILLKSGRLQSSISVLSSL 274 (552)
Q Consensus 217 g~---~~~---~~~~---~~~~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a 274 (552)
++ ... -.++ ....|..|...+.+..... ..+ +.++...|..++-.|++..|.+.|+.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00 000 0001 1124445554444433211 011 556667777777777777777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHH
Q 008818 275 LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 354 (552)
Q Consensus 275 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (552)
|+++|.+...|..+|.+|....+.++-...|.++..++|.+++.|+..|.+++ -+++++
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f---------------------lL~q~e 411 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF---------------------LLQQYE 411 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH---------------------HHHHHH
Confidence 77777777777777777777777777777777777777777777777777776 667777
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHH
Q 008818 355 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGN 434 (552)
Q Consensus 355 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~ 434 (552)
+|+..|++++.++|++...+..++.+.++++++++++..|+.+....|+.++.+...+....
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt------------------ 473 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT------------------ 473 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh------------------
Confidence 77777777777777777777777777777777777777777777777777776665555422
Q ss_pred HHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--------hhhhhhHHHHH-HhhhhHHHHHHH
Q 008818 435 EMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFL-DQASAVNVAKEC 505 (552)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~-~~~~~~~~A~~~ 505 (552)
.+++|++|++.|..++.-.+ ...+.+.|.+. .-.+++..|+..
T Consensus 474 ----------------------------DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~L 525 (606)
T KOG0547|consen 474 ----------------------------DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENL 525 (606)
T ss_pred ----------------------------hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHH
Confidence 23444555555554333111 11222222222 224889999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 506 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 506 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
+++|++++|.+..++..||.+..++|+.++|+++|++++.+..
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988764
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=3.9e-29 Score=256.47 Aligned_cols=349 Identities=12% Similarity=0.010 Sum_probs=297.6
Q ss_pred HHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCc
Q 008818 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 173 (552)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~ 173 (552)
...+...|+...++ ..+...+...|.....++.+|.. ....+.++.|...+++++..+|+++.++..+|.++...|++
T Consensus 49 ~~~~~~~g~~~~A~-~l~~~~l~~~p~~~~~l~~l~~~-~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGL-TLLSDRVLTAKNGRDLLRRWVIS-PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhH-HHhHHHHHhCCCchhHHHHHhhh-HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 34466667777776 78899999999999999999988 88899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHH
Q 008818 174 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 253 (552)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 253 (552)
++|+..|++++++.|+. ...+..++.++ ...|++++|+..+++++...|+++.++..
T Consensus 127 ~~Ai~~l~~Al~l~P~~------------~~a~~~la~~l-----------~~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 127 ATVADLAEQAWLAFSGN------------SQIFALHLRTL-----------VLMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred HHHHHHHHHHHHhCCCc------------HHHHHHHHHHH-----------HHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999997653 12233444443 34566699999999999999999888877
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 332 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 332 (552)
++ .+...|++++|+..+++++..+| ........++.++...|++++|+..|++++..+|++...+..+|.++.
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~----- 257 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY----- 257 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----
Confidence 65 48899999999999999999876 444555677899999999999999999999999999999999999988
Q ss_pred cccccccccccchhHHHhcCHHH----HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 333 VLAGAGANTGEGACLDQASAVNV----AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
..|++++ |+..|+++++++|++..++..+|.++...|++++|+..+++++.++|++.
T Consensus 258 ----------------~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~--- 318 (656)
T PRK15174 258 ----------------QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP--- 318 (656)
T ss_pred ----------------HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---
Confidence 8888885 89999999999999999999999999999999999999999999999864
Q ss_pred HHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhh--hhh
Q 008818 409 YAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE--CAG 486 (552)
Q Consensus 409 ~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 486 (552)
.++..+|.++...|++++|+..+.+.+...+. ..+
T Consensus 319 -------------------------------------------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 319 -------------------------------------------YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred -------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 45666788889999999999999987754333 445
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 487 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
..+|.++...|++++|+..|+++++.+|++. ...+++|+..|.++++..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence 5678899999999999999999999999864 233445666666665554
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.9e-29 Score=244.64 Aligned_cols=434 Identities=16% Similarity=0.133 Sum_probs=310.7
Q ss_pred hhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCcc--chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008818 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSS--SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 169 (552)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~--~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~ 169 (552)
.-|.++.++|+...++ ..|.+|++++|....+...+|.+. ......+..+...+.++...+|.||.++..|+.-|+.
T Consensus 204 gig~Cf~kl~~~~~a~-~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 204 GIGHCFWKLGMSEKAL-LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF 282 (1018)
T ss_pred hhhhHHHhccchhhHH-HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh
Confidence 4566777777777776 778888888887777777666653 2334566677777777777888888888888888888
Q ss_pred cCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcch-H
Q 008818 170 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-A 248 (552)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~ 248 (552)
.|+|..+..+...++.... .-.-....++.+|.. +..+|+|++|..+|.++++.++++ .
T Consensus 283 K~dy~~v~~la~~ai~~t~---------~~~~~aes~Y~~gRs-----------~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTE---------NKSIKAESFYQLGRS-----------YHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred cccHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-----------HHhhccHHHHHHHHHHHHccCCCCcc
Confidence 8888888888888876521 111112233344444 567778899999999999999988 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
-.++.+|.+|...|+++.|+.+|+++++..|++......||.+|...+ ..+.|.....++++..|.+..+|..++.
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 788899999999999999999999999999999999999999998886 6788999999999999999999999998
Q ss_pred HHHHhhcccc-----------------cccccccccchhHHHhcCHHHHHHHHHHHHhc-----CCC-----cHHHHHHH
Q 008818 325 LLLCKYGSVL-----------------AGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPK-----AAHIWANL 377 (552)
Q Consensus 325 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~l 377 (552)
++........ ..+....++|..+...|++.+|...|..++.. +++ +....+++
T Consensus 423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 8864411110 12344455788888888888888888888776 122 23357888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH------------HHhHhhccCchHH----H----------hH
Q 008818 378 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR------------IKDAERSQEPTEQ----L----------SW 431 (552)
Q Consensus 378 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------------l~~~~~~~~~~~~----~----------~~ 431 (552)
|.++...++++.|.+.|..++..+|...+++..++... +..+......... + ..
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 88888888888888888888888888888877665211 1111111110000 0 00
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHhHHHHHh------------chhhHHHHHHHHHhhhcchhhhh--hhhHHHHHHhhh
Q 008818 432 AGNEMASILREGDPVQIEPPIAWAGFAAVQK------------THHEVAAAFETEENELSKMEECA--GAGESAFLDQAS 497 (552)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~A~~~~~~~l~~~~~~~--~~~la~~~~~~~ 497 (552)
+-+.+...+...... .++.+...+|+++. ..+.+++|+..|.+.|+..+.+. -.++|.++...|
T Consensus 583 a~k~f~~i~~~~~~~--~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTK--TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccHHHHHHhhhccC--CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 111122222222221 45566677777664 34566788888888776554444 447888888888
Q ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 498 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
++.+|+..|.++.+-..++.++|.++|.||..+|+|..|++.|+.++..+-
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888877777778888888888888888888888888887664
No 13
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=8.1e-29 Score=233.99 Aligned_cols=292 Identities=16% Similarity=0.148 Sum_probs=250.8
Q ss_pred HHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccc
Q 008818 136 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 215 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (552)
......|...|++.....++...++..+|..|+.+++|++|..+|+.+-++.|-. ...-+.....-+|
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r---v~~meiyST~LWH--------- 399 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR---VKGMEIYSTTLWH--------- 399 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhHHHHHHHH---------
Confidence 4456667777888777889999999999999999999999999999998885532 1111221111111
Q ss_pred cCCCccccccCchhHHHHH-HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008818 216 SGDNSLDKELEPEELEEIL-SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 294 (552)
Q Consensus 216 ~g~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 294 (552)
+.+ +-++ .+.+..+..+|+.|+.|..+|+||.-+++++.|+++|++|+.++|.+..+|..+|.=+..
T Consensus 400 Lq~------------~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~ 467 (638)
T KOG1126|consen 400 LQD------------EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA 467 (638)
T ss_pred HHh------------hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh
Confidence 111 1222 234567788999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 295 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 295 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
..+++.|..+|++++..+|.+..+|+.+|.+|. ++++++.|.-.|++|++++|.+....
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~---------------------Kqek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL---------------------KQEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee---------------------ccchhhHHHHHHHhhhcCCccchhHH
Confidence 999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHH
Q 008818 375 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAW 454 (552)
Q Consensus 375 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (552)
..+|.++.++|+.++|+..|++|+.++|.++...+..+.
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~----------------------------------------- 565 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS----------------------------------------- 565 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH-----------------------------------------
Confidence 999999999999999999999999999998866655443
Q ss_pred HhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChh
Q 008818 455 AGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 534 (552)
Q Consensus 455 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 534 (552)
++..++++++|+..+++.-++-|++..+++.+|.+|.+.|+.+
T Consensus 566 -------------------------------------il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 566 -------------------------------------ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred -------------------------------------HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 6777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 008818 535 SSGKCLEKVLMVYCSS 550 (552)
Q Consensus 535 ~A~~~~~~al~l~~~~ 550 (552)
.|+..|--|+++-|+.
T Consensus 609 ~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhHHHhcCCCcc
Confidence 9999999888887653
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-26 Score=225.99 Aligned_cols=410 Identities=16% Similarity=0.108 Sum_probs=271.0
Q ss_pred hhhhhhhhhCCCCccccccCCCccchhHHh--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 109 SKMDSALEFGVDADGDQSGLGTSSSSREEK--VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~~~~--~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
-.|+.|=.+.......+..++.. +...+. ++.+.+.|..+++.+|+|..++...|.+.+..|+|..|+.+|++++.+
T Consensus 115 ~~~~~A~ki~m~~~~~l~~~~~~-~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i 193 (1018)
T KOG2002|consen 115 LLFDLADKIDMYEDSHLLVQRGF-LLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRI 193 (1018)
T ss_pred HHhhHHHHhhccCcchhhhhhhh-hhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhc
Confidence 55666666766666666666655 333333 588888898999999999999999999999999999999999999988
Q ss_pred HhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC---C
Q 008818 187 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---R 263 (552)
Q Consensus 187 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~ 263 (552)
+|.....+. .+.|.++..+|.. +.|+..|.++++++|.++.++..||.+-.... .
T Consensus 194 np~~~aD~r-----------Igig~Cf~kl~~~-----------~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 194 NPACKADVR-----------IGIGHCFWKLGMS-----------EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred CcccCCCcc-----------chhhhHHHhccch-----------hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHH
Confidence 776532211 1223333334333 66777777777777766666666666555443 3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhhccccc-----
Q 008818 264 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN---HPAALINYAALLLCKYGSVLA----- 335 (552)
Q Consensus 264 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~----- 335 (552)
+..++..+.++...++.+|.++..|+..++..|+|+.+......++...-. -...++.+|..+..+++...+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 455666666666666666666666666666666666666666665554322 223355555555522111110
Q ss_pred -----c----cccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCC
Q 008818 336 -----G----AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG----DHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 336 -----~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p 402 (552)
. .-.++.+|+.+...|+++.|+.+|+++++..|++......||.+|...+ ..+.|..++.++++..|
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence 0 1112233344446666666666666666666666666666666666654 45666666666666666
Q ss_pred CCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc--
Q 008818 403 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK-- 480 (552)
Q Consensus 403 ~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-- 480 (552)
.+..+|..++......- .......+..+...+ ..... +-.++...++|..++..|++.+|...+..++..
T Consensus 412 ~d~~a~l~laql~e~~d--~~~sL~~~~~A~d~L----~~~~~--~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTD--PWASLDAYGNALDIL----ESKGK--QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred ccHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHH----HHcCC--CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 66666666555333211 111122222222222 22222 134678999999999999999999999886654
Q ss_pred --hhh--------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 481 --MEE--------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 481 --~~~--------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.+. ...|++|.++...++++.|.+.|..+++..|...+++..+|.+....++..+|...++.++.+-.+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 111 237899999999999999999999999999999999999998889999999999999999987654
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=6.1e-26 Score=238.04 Aligned_cols=403 Identities=10% Similarity=-0.032 Sum_probs=250.0
Q ss_pred hhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHH
Q 008818 99 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 178 (552)
Q Consensus 99 ~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 178 (552)
..|+...++ ..|.+++...|.....+..+|.. ....+.++.|...++++++.+|.++.++..+|.++...|++++|+.
T Consensus 27 ~~g~~~~A~-~~~~~~~~~~~~~a~~~~~lA~~-~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 27 WAGQDAEVI-TVYNRYRVHMQLPARGYAAVAVA-YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 334444443 45555555455554445555555 5555666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 008818 179 SYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLIL 258 (552)
Q Consensus 179 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 258 (552)
.++++++..|++. . +..++.++ ...|++++|+..++++++..|++..++..+|.++
T Consensus 105 ~l~~~l~~~P~~~------------~-~~~la~~l-----------~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 105 KAKQLVSGAPDKA------------N-LLALAYVY-----------KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHhCCCCH------------H-HHHHHHHH-----------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6666666544321 1 12223332 2334446666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 259 LKSGRLQSSISVLSSLLAVDPNNCD-----CIGNLGIAYF-----QSGDM---EQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 259 ~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
...+..++|+..++++.. .|+... ....+..++. ..+++ ++|+..++++++..|.++.....+...
T Consensus 161 ~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 666666666666655554 333200 1111111111 11223 556666666665433333221111100
Q ss_pred HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 326 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
... .++ .+...|++++|+..|+++++..|.. ..+...+|.+|..+|++++|+.+|++++..+|.+
T Consensus 240 ~~d-------------~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 240 RID-------------RLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred HHH-------------HHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 000 011 1236799999999999999886432 2244446999999999999999999999988876
Q ss_pred cc----hHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcC---------CCCCCCC--HHHHHhHHHHHhchhhHHH
Q 008818 405 MS----TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG---------DPVQIEP--PIAWAGFAAVQKTHHEVAA 469 (552)
Q Consensus 405 ~~----~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~ 469 (552)
.. ....++...+. .+.+..+...+..+.... ....|++ ..++..++.++...|++++
T Consensus 306 ~~~~~~~~~~L~~a~~~--------~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 306 ADLSDEELADLFYSLLE--------SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred CCCChHHHHHHHHHHHh--------cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 32 22222222111 122222322332222221 1122332 3577889999999999999
Q ss_pred HHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 470 AFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 470 A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
|+..+.+.+. |.+..+++.+|.++...|++++|+..++++++++|++..+++.+|.++...|++++|...++++++..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999554 66678899999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 008818 548 CSS 550 (552)
Q Consensus 548 ~~~ 550 (552)
|.+
T Consensus 458 Pd~ 460 (765)
T PRK10049 458 PQD 460 (765)
T ss_pred CCC
Confidence 764
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.2e-26 Score=217.65 Aligned_cols=267 Identities=16% Similarity=0.201 Sum_probs=223.6
Q ss_pred HHHHhhhchhhHhhhhhhhhhhhhC-------CCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008818 94 GKKINKLGKCRSRISSKMDSALEFG-------VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLM 166 (552)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~-------~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~ 166 (552)
+.++.++|+.|..+ ..|+++..+. |...........++|..+ +--..--..+..+..+|+.++.|..+|++
T Consensus 353 ~wvl~q~GrayFEl-~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq-~~v~Ls~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 353 GWVLSQLGRAYFEL-IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ-DEVALSYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH-hhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence 44455666666655 5555544432 322222222222212222 22223333445566789999999999999
Q ss_pred HHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcc
Q 008818 167 YQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 246 (552)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 246 (552)
|.-+++++.|+++|++|++++|+ .+++|..+|.. +.....++.|..+|+.++..+|.
T Consensus 431 fSLQkdh~~Aik~f~RAiQldp~-------------------faYayTLlGhE----~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLDPR-------------------FAYAYTLLGHE----SIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccCCc-------------------cchhhhhcCCh----hhhhHHHHhHHHHHHhhhcCCch
Confidence 99999999999999999999753 34556667776 77889999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 406 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 406 (552)
+ ..+++++|+..+++..++-|++..+++.+|.+|.+.|+.+.|+..|.-|+.++|.-..
T Consensus 568 ~---------------------~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 568 F---------------------SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred H---------------------hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8 8999999999999999999999999999999999999999999999999999997654
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=2.3e-24 Score=226.25 Aligned_cols=369 Identities=11% Similarity=0.019 Sum_probs=276.0
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
....+..+.+.+.+.++...+|..+.++..+|.++...|++++|+..|+++++..|.+. . ++..++.+
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------~------a~~~la~~ 92 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------D------YQRGLILT 92 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------H------HHHHHHHH
Confidence 45566777888888888888999999999999999999999999999999999976541 1 12344444
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
+...|++++|+..++++++.+|+++. +..+|.++...|++++|+..|++++++.|+++.++..+|.++
T Consensus 93 -----------l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 93 -----------LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred -----------HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556779999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHHHhhcccccccccccccchhHHHhcCH---HHHHHHHHHHH
Q 008818 293 FQSGDMEQSAKCFQDLILKDQNHPAA-----LINYAALLLCKYGSVLAGAGANTGEGACLDQASAV---NVAKECLLAAL 364 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~al 364 (552)
...|..++|+..++++.. .|+.... ...+..+.. +......+++ ++|+..++.++
T Consensus 161 ~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~----------------~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSF----------------MPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhc----------------ccccChhHHHHHHHHHHHHHHHHH
Confidence 999999999999988776 5543111 111111111 1111133445 78999999999
Q ss_pred hcCCCcHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHhHhhccCchHHHhHHHHHH
Q 008818 365 KADPKAAH-------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSRIKDAERSQEPTEQLSWAGNEM 436 (552)
Q Consensus 365 ~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~l~~~~~~~~~~~~~~~~~~~~ 436 (552)
+..|.++. ++.....++...|++++|+..|+++++..+..+. +...++...+.. .....+...+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~--------g~~e~A~~~l 295 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL--------HQPEKAQSIL 295 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc--------CCcHHHHHHH
Confidence 76443322 2222123446789999999999999988643222 222223322211 1233344444
Q ss_pred HHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh-----------------hhhhhhHHHHHHhhhhH
Q 008818 437 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-----------------ECAGAGESAFLDQASAV 499 (552)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-----------------~~~~~~la~~~~~~~~~ 499 (552)
..++.............+..++.++...|++++|+..+.......+ ..++..+|.++...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 4444322111112245677788889999999999999988655322 23566889999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 500 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 500 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
++|+..+++++...|+++.++..+|.++...|++++|+..+++++++.|..
T Consensus 376 ~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 376 PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999999988754
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.9e-24 Score=212.18 Aligned_cols=304 Identities=15% Similarity=0.116 Sum_probs=218.7
Q ss_pred ccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHH
Q 008818 124 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 203 (552)
Q Consensus 124 ~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 203 (552)
..+..|.. ....+.++.|...+.++++.+|+++.++..+|.++...|++++|+..+++++.. |.. +. ....
T Consensus 37 ~~y~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~------~~-~~~~ 107 (389)
T PRK11788 37 RDYFKGLN-FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDL------TR-EQRL 107 (389)
T ss_pred HHHHHHHH-HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCC------CH-HHHH
Confidence 33444555 566778888999999999999999999999999999999999999999988764 110 00 0111
Q ss_pred HHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-
Q 008818 204 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC- 282 (552)
Q Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~- 282 (552)
..+..++.+ +...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+.
T Consensus 108 ~~~~~La~~-----------~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (389)
T PRK11788 108 LALQELGQD-----------YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR 176 (389)
T ss_pred HHHHHHHHH-----------HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch
Confidence 233344444 33445557777777777777777777777777777777777777777777777766542
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 283 ----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 283 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
..+..+|.++...|++++|+..|+++++.+|+...++..++.++. ..|++++|+.
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~ 235 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL---------------------AQGDYAAAIE 235 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH---------------------HCCCHHHHHH
Confidence 245567777777777777777777777777777777777776666 7777777777
Q ss_pred HHHHHHhcCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHH
Q 008818 359 CLLAALKADPKA-AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 437 (552)
Q Consensus 359 ~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~ 437 (552)
.|++++..+|.+ ..++..++.+|...|++++|+..++++++..|+...
T Consensus 236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~------------------------------- 284 (389)
T PRK11788 236 ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL------------------------------- 284 (389)
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-------------------------------
Confidence 777777776664 355667777777777777777777777777665321
Q ss_pred HHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Q 008818 438 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 517 (552)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (552)
...++..+.+.|++++|+..++++++..|++.
T Consensus 285 ------------------------------------------------~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 285 ------------------------------------------------LLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred ------------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 12334477788999999999999999999988
Q ss_pred HHHHHHHHHHHH--cCChhHHHHHHHHHHHHh
Q 008818 518 HIWANLANAYYL--TGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 518 ~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~ 547 (552)
.....++..... .|+..+|+..+++.++..
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 666555544432 568999999999888743
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.2e-23 Score=220.65 Aligned_cols=373 Identities=11% Similarity=0.024 Sum_probs=277.5
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHH-HHHHHhhhhcccc--
Q 008818 137 EKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL-SLVQIHHAQCLLP-- 213 (552)
Q Consensus 137 ~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~-- 213 (552)
+...++...+....+..|.+..++..++......|++++|...|+++... +.+... .+.+. .++..+.....+.
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARL--SQTLMARLASLLESHPYLATP 432 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Cccccc--CHHHHHHHHHHHHhCCcccch
Confidence 45555666666666778999999999999999999999999999999875 221111 11222 2233332221100
Q ss_pred ---cccCC-C-ccccccCchhHHH---HHHHHHHHHhcCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 008818 214 ---ESSGD-N-SLDKELEPEELEE---ILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 283 (552)
Q Consensus 214 ---~~~g~-~-~~~~~~~~~~~~~---A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 283 (552)
..+|. . ......-.|++.+ +...+.+++...|. ++.+|+.+|.++.. +++.+|+..|.+++...|++.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~- 510 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW- 510 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-
Confidence 00100 0 0000112444433 55666667777777 89999999999998 899999999999999999754
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHH
Q 008818 284 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 363 (552)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 363 (552)
....+|.++...|++++|+..|++++...|.+ ..+..+|.++. ..|++++|+.+|+++
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all---------------------~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQ---------------------AAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHH---------------------HCCCHHHHHHHHHHH
Confidence 46677888889999999999999988775554 45677777777 899999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcC
Q 008818 364 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG 443 (552)
Q Consensus 364 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (552)
++.+|++...+..++......|++++|+..|+++++++|+ ...+..++...... . ... +....+...
T Consensus 569 L~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l-G-------~~d----eA~~~l~~A 635 (987)
T PRK09782 569 EQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR-H-------NVP----AAVSDLRAA 635 (987)
T ss_pred HhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-C-------CHH----HHHHHHHHH
Confidence 9999998888888888888889999999999999999996 66676666543321 1 111 122333444
Q ss_pred CCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH
Q 008818 444 DPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 521 (552)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 521 (552)
....|+++.++..+|.++...|++++|+..+.+++. |.+..+++++|.++...|++++|+.+|+++++++|++..+..
T Consensus 636 L~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 636 LELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 445677888888888888888888888888888654 566677888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 522 NLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 522 ~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
..|.+.....++..|.+.++++..+-+.
T Consensus 716 ~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 716 LTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 8888888888888888888888776543
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=3.4e-24 Score=224.69 Aligned_cols=298 Identities=16% Similarity=0.061 Sum_probs=258.6
Q ss_pred HHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCc
Q 008818 143 KTGLVHVARKMPK--NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 220 (552)
Q Consensus 143 ~~~l~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 220 (552)
...+.+++..+|. ++.+|+.+|.++.. +++.+|+..|.+++...|+. . .+..++.+
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~---------~----~~L~lA~a-------- 518 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA---------W----QHRAVAYQ-------- 518 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---------H----HHHHHHHH--------
Confidence 3444455556677 99999999999998 89999999999999986542 1 12233333
Q ss_pred cccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008818 221 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 300 (552)
Q Consensus 221 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 300 (552)
+...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|+++++.+|.+...+..++......|++++
T Consensus 519 ---l~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 ---AYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred ---HHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 235577799999999998776654 5578999999999999999999999999999998888888888888899999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 301 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 301 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
|+..|+++++++|+ ...+..+|.++. +.|++++|+..|++++.++|+++.++.++|.+
T Consensus 595 Al~~~~~AL~l~P~-~~a~~~LA~~l~---------------------~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 595 ALNDLTRSLNIAPS-ANAYVARATIYR---------------------QRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999996 889999998888 99999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHH
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 460 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
+...|++++|+..|+++++++|+++ .++..+|.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~----------------------------------------------~a~~nLA~a 686 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDP----------------------------------------------ALIRQLAYV 686 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH----------------------------------------------HHHHHHHHH
Confidence 9999999999999999999999864 567778888
Q ss_pred HhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH
Q 008818 461 QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 461 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 535 (552)
+...|++++|+..+++++. +.........|.+.....+++.|.+.+.+....+|... +....|.++...+++-.
T Consensus 687 l~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~~~ 762 (987)
T PRK09782 687 NQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNVGG 762 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccccC
Confidence 9999999999999999765 55556677899999999999999999999999999988 88999999999888743
No 21
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-22 Score=183.13 Aligned_cols=350 Identities=13% Similarity=0.107 Sum_probs=278.1
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHH
Q 008818 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 233 (552)
Q Consensus 154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 233 (552)
-.++-.++..|.++.+.|....|+..|..++...| -++ .+|..++ +.-.-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P---------~~W---~AWleL~------------------~lit~ 210 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP---------WFW---SAWLELS------------------ELITD 210 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC---------cch---HHHHHHH------------------Hhhch
Confidence 45677899999999999999999999999998643 222 2222222 22333
Q ss_pred HHHHHHHHhcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 234 LSKLKESMQSDT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 234 ~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
++.....+..-| .+...-+.++.++....+.+++++-++..+.. .|.+...-...|.+.....++++|+..|+...+
T Consensus 211 ~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k 290 (559)
T KOG1155|consen 211 IEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK 290 (559)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 344444443344 33344456888899989999999999999988 888888899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhccccc-------------ccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLA-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 377 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 377 (552)
.+|-..+-...+..+++-+...... .+.....+|..|.-.++.++|+.+|+++++++|....+|..+
T Consensus 291 nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm 370 (559)
T KOG1155|consen 291 NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM 370 (559)
T ss_pred cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh
Confidence 9997766655566665544332211 255556689999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhH
Q 008818 378 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 457 (552)
Q Consensus 378 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (552)
|.=|..+++...|+..|++|++++|.+..+|++++...-.- .+.....-.++.+....|.++..|..+
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim------------~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM------------KMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh------------cchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 99999999999999999999999999999999987642210 011112234455566678999999999
Q ss_pred HHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHH
Q 008818 458 AAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALK-------ADPKAAHIWANLANAYY 528 (552)
Q Consensus 458 ~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~ 528 (552)
|.+|.+.++.++|+.+|..++. +.+..+++.+|..+.++++.++|..+|++.++ ..|+-..+...|+.-+.
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 9999999999999999999766 44558899999999999999999999999998 45666778888999999
Q ss_pred HcCChhHHHHHHHHHHH
Q 008818 529 LTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 529 ~~g~~~~A~~~~~~al~ 545 (552)
+.+++++|-.+..+++.
T Consensus 519 k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 519 KMKDFDEASYYATLVLK 535 (559)
T ss_pred hhcchHHHHHHHHHHhc
Confidence 99999999887766553
No 22
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.93 E-value=2.7e-23 Score=180.88 Aligned_cols=319 Identities=18% Similarity=0.132 Sum_probs=257.2
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
+|.+..-++.+|..++..|++..|+..|..|++.+|++ ..+.+..+.+|..+|.. .-
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~------------Y~aifrRaT~yLAmGks-----------k~ 90 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN------------YQAIFRRATVYLAMGKS-----------KA 90 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------------HHHHHHHHHHHhhhcCC-----------cc
Confidence 56677789999999999999999999999999997653 34556777777666666 89
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH------------HHHHHHHHcCC
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIG------------NLGIAYFQSGD 297 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~ 297 (552)
|+..+.+++++.|+...+...+|.+++++|++++|+..|+.++..+|.+. +++. .....+...|+
T Consensus 91 al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 91 ALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred chhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999542 2222 22334456799
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 008818 298 MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 377 (552)
Q Consensus 298 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 377 (552)
...|+....+.+++.|-+...+...+.+|. ..|+...||..++.+-++..++.+.++.+
T Consensus 171 ~~~ai~~i~~llEi~~Wda~l~~~Rakc~i---------------------~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPWDASLRQARAKCYI---------------------AEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHHH---------------------hcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999999999999999888888888887 89999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhH
Q 008818 378 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 457 (552)
Q Consensus 378 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (552)
+.+++..|+.+.++...+.+++++|++...+-..-. +....+ ...-
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk--lkKv~K--------------------------------~les 275 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK--LKKVVK--------------------------------SLES 275 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH--HHHHHH--------------------------------HHHH
Confidence 999999999999999999999999998755422111 100000 0111
Q ss_pred HHHHhchhhHHHHHHHHHhhhcchhh------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 008818 458 AAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 531 (552)
Q Consensus 458 ~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 531 (552)
+......++|.+++...++.+...+. +..-.+..|+...+++-+|+..+.++|.++|++..++...+.+|....
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 22234556777777777776664444 223356668888888899999999999999988899999999998888
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 008818 532 DHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 532 ~~~~A~~~~~~al~l~~~ 549 (552)
.|+.|+..|++|.++-++
T Consensus 356 ~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 899999999988887654
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.3e-24 Score=192.78 Aligned_cols=342 Identities=16% Similarity=0.104 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 237 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 237 (552)
..+-..|+-+++.|+|++||++|.+||++.|+. |-+ +.+++-+ |...|++++.++.+
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e------piF------YsNraAc-----------Y~~lgd~~~Vied~ 172 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE------PIF------YSNRAAC-----------YESLGDWEKVIEDC 172 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC------chh------hhhHHHH-----------HHHHhhHHHHHHHH
Confidence 456677888888888888888888888887652 112 2233333 33456668888888
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------Hhc--------------CCCCHHH-
Q 008818 238 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL------------------LAV--------------DPNNCDC- 284 (552)
Q Consensus 238 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a------------------l~~--------------~p~~~~~- 284 (552)
.++++++|++..+++.++.++..+|++++|+....-. ++. .|.-|.+
T Consensus 173 TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~ 252 (606)
T KOG0547|consen 173 TKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT 252 (606)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 8888888888888888888888888888877644321 110 0110100
Q ss_pred ----H--------------------HHHHHHH--HHc---CCHHHHHHHHHHHHhhC-----C---CCHHHHHHHHHHHH
Q 008818 285 ----I--------------------GNLGIAY--FQS---GDMEQSAKCFQDLILKD-----Q---NHPAALINYAALLL 327 (552)
Q Consensus 285 ----~--------------------~~la~~~--~~~---g~~~~A~~~~~~al~~~-----p---~~~~~~~~l~~~~~ 327 (552)
+ -.+...+ ... ..|.+|...+.+..... - +..--+...+.++.
T Consensus 253 fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 253 FIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred HHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 0 0011111 111 14555555554443221 0 11111223333332
Q ss_pred HhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 008818 328 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
|..+.-.|+...|...|+.+|.++|.+...|..+|.+|....+.++-...|.++..++|.+++.
T Consensus 333 ----------------gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 333 ----------------GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred ----------------hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 3333477888888888888888888877778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--hhh
Q 008818 408 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--ECA 485 (552)
Q Consensus 408 ~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~ 485 (552)
++..+..++. .+++..+..+ ++....+.|++...+..++-+.+++++++++...|.......+ +..
T Consensus 397 YyHRgQm~fl--------L~q~e~A~aD----F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev 464 (606)
T KOG0547|consen 397 YYHRGQMRFL--------LQQYEEAIAD----FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEV 464 (606)
T ss_pred hHhHHHHHHH--------HHHHHHHHHH----HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 8877765442 1222333333 3444555677777888888889999999999999999877554 466
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHH-HHcCChhHHHHHHHHHHHHhccc
Q 008818 486 GAGESAFLDQASAVNVAKECLLAALKADPK------AAHIWANLANAY-YLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
+...|.++...++|++|++.|.+++++.|. ++..+...|.+. ...+++.+|+..+++|+++-|++
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH
Confidence 778888999999999999999999999998 555555555543 35689999999999999988765
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=5.6e-22 Score=193.75 Aligned_cols=325 Identities=15% Similarity=0.160 Sum_probs=249.4
Q ss_pred HHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccc
Q 008818 136 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 215 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (552)
.|.++.|...+.++++++|.++.+|+.||.+|..+|+.+++...+-.|-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------------------ 201 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------------------ 201 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------------------
Confidence 46788888999999999999999999999999999988877776665544
Q ss_pred cCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 008818 216 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 295 (552)
Q Consensus 216 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 295 (552)
++|++.+.|..++.....+|++.+|+-+|.+||+.+|.+....+..+.+|.++
T Consensus 202 ---------------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 202 ---------------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT 254 (895)
T ss_pred ---------------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 46777899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC--cHHH
Q 008818 296 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHI 373 (552)
Q Consensus 296 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 373 (552)
|+...|+..|.+++...|....-+ ....+.. .+..+...++-+.|++.++.++....+ ....
T Consensus 255 G~~~~Am~~f~~l~~~~p~~d~er-~~d~i~~---------------~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed 318 (895)
T KOG2076|consen 255 GDLKRAMETFLQLLQLDPPVDIER-IEDLIRR---------------VAHYFITHNERERAAKALEGALSKEKDEASLED 318 (895)
T ss_pred ChHHHHHHHHHHHHhhCCchhHHH-HHHHHHH---------------HHHHHHHhhHHHHHHHHHHHHHhhccccccccH
Confidence 999999999999999999322111 1111111 123344677779999999999984332 4556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcc--------------------------h-HHHHHHHHHHhHhhccC
Q 008818 374 WANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMS--------------------------T-RYAVAVSRIKDAERSQE 424 (552)
Q Consensus 374 ~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~--------------------------~-~~~la~~~l~~~~~~~~ 424 (552)
+..++.++.....++.|.......... .+++.. . +..+++..+.. .+
T Consensus 319 ~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~----~e 394 (895)
T KOG2076|consen 319 LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE----RE 394 (895)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc----cc
Confidence 778899999999999999888766551 111110 0 11111111111 00
Q ss_pred chHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh---hhhhhhHHHHHHhhhhHHH
Q 008818 425 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME---ECAGAGESAFLDQASAVNV 501 (552)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~la~~~~~~~~~~~ 501 (552)
. ...+...+........+....++.++..+...|++.+|+..+....+... ...|+.+|.||...|.+++
T Consensus 395 ~-------~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 395 L-------LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred h-------HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 1 11111222222222446678999999999999999999999998766332 3479999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008818 502 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 544 (552)
Q Consensus 502 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 544 (552)
|+.+|++++...|++.++...|+.++.++|+.++|.+.+++..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999887643
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.5e-23 Score=200.81 Aligned_cols=257 Identities=19% Similarity=0.183 Sum_probs=226.0
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQ 300 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~ 300 (552)
...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 355777999999999999999999999999999999999999999999998854332 3578899999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc-----HHHHH
Q 008818 301 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----AHIWA 375 (552)
Q Consensus 301 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~ 375 (552)
|+..|+++++.+|.+..++..++.++. ..|++++|++.+.++++..|.+ ...+.
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQ---------------------QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHH---------------------HhchHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 999999999999988888888888887 8999999999999999988764 23567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHH
Q 008818 376 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 455 (552)
Q Consensus 376 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (552)
.+|.++...|++++|+.+|+++++.+|++. .++.
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------------~~~~ 218 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCV----------------------------------------------RASI 218 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCCH----------------------------------------------HHHH
Confidence 899999999999999999999999888643 3566
Q ss_pred hHHHHHhchhhHHHHHHHHHhhhcchh---hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 008818 456 GFAAVQKTHHEVAAAFETEENELSKME---ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 532 (552)
Q Consensus 456 ~~~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 532 (552)
.+|.++...|++++|+..+.+.+...+ ..++..++.+|...|++++|+..++++++..|+... +..+|.++...|+
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~ 297 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCC
Confidence 788889999999999999999775332 245678899999999999999999999999998754 4899999999999
Q ss_pred hhHHHHHHHHHHHHhcc
Q 008818 533 HRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 533 ~~~A~~~~~~al~l~~~ 549 (552)
+++|+..|+++++..|.
T Consensus 298 ~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 298 PEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 99999999999998764
No 26
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=181.89 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
.+|.+.++.++...|. ++.+..|+.+|.+..+...|+..|...++..|.+...+...+.++..++++++|+++|+.+++
T Consensus 240 r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 240 RRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred hhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh
Confidence 4444444444444432 556666777777777777777777777777777777777777777777777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 390 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 390 (552)
.+|.+.++..-++.-|+ -.++.+-|+.+|++.++..-.+++.+.++|.|.+.-++++-+
T Consensus 319 ~~~~nvEaiAcia~~yf---------------------Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 319 LHPINVEAIACIAVGYF---------------------YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred cCCccceeeeeeeeccc---------------------cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 77777666555554444 566677777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHH
Q 008818 391 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 470 (552)
Q Consensus 391 ~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 470 (552)
+..|++++....+..
T Consensus 378 L~sf~RAlstat~~~----------------------------------------------------------------- 392 (478)
T KOG1129|consen 378 LPSFQRALSTATQPG----------------------------------------------------------------- 392 (478)
T ss_pred HHHHHHHHhhccCcc-----------------------------------------------------------------
Confidence 777777766543221
Q ss_pred HHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 471 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
...+.||++|.+....|++..|.++|+-++..++++.+++.+||.+-.+.|+.++|..++..|-.+.|
T Consensus 393 ----------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 393 ----------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred ----------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 11245666666677777788888888888888888888888888888888888888888887777665
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-22 Score=186.17 Aligned_cols=406 Identities=15% Similarity=0.111 Sum_probs=292.3
Q ss_pred cccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHH-------Hhhccccccch
Q 008818 125 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-------LLRCEADIARP 197 (552)
Q Consensus 125 ~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~ 197 (552)
.+.++.+ ....+.+..+..++..- ..+..+....+..+.++....++++|...+.+. .. +|.+.......
T Consensus 52 ~~~~aq~-l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~-~~~~~~f~yy~~~~~~~l~~ 128 (611)
T KOG1173|consen 52 IYWLAQV-LYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRG-HVETNPFSYYEKDAANTLEL 128 (611)
T ss_pred HHHHHHH-HHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhcchhhcchhhhceecc
Confidence 3344444 55566666666666433 456677889999999999999999999998844 21 11110000000
Q ss_pred hHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC---------------
Q 008818 198 ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--------------- 262 (552)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------------- 262 (552)
+...........+.+....|.. |....+.++|...|.+++..++.+.++...+-..++-.-
T Consensus 129 n~~~~~~~~~~essic~lRgk~----y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 129 NSAGEDLMINLESSICYLRGKV----YVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred Ccccccccccchhceeeeeeeh----hhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 0000000001112222333443 666777899999999999999888776655543332211
Q ss_pred --CHHHHHHHHHHHH----------hcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 263 --RLQSSISVLSSLL----------AVDP--------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 263 --~~~~A~~~~~~al----------~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
...+=++.+-++. ...| ++.+.....+..++..+++.+..+.++..++.+|-+...+...
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ 284 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH 284 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH
Confidence 1111111111111 0112 3567788889999999999999999999999998877664333
Q ss_pred HHHHHHhhccc-------------ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 008818 323 AALLLCKYGSV-------------LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 389 (552)
Q Consensus 323 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 389 (552)
..++....... -..+-.|+..|..|...|++.+|..+|.++..++|....+|...|..+...|..++
T Consensus 285 ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 285 IACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence 22433332211 12477888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHH
Q 008818 390 SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAA 469 (552)
Q Consensus 390 A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (552)
|+.+|..|-++.|........++....... ..+-..+.+..+..+.|.+|.++..+|.+.+..+.|.+
T Consensus 365 AmaaY~tAarl~~G~hlP~LYlgmey~~t~------------n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHLPSLYLGMEYMRTN------------NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHhc------------cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHH
Confidence 999999999999998877777766444211 11223455677778889999999999999999999999
Q ss_pred HHHHHHhhhcchh---------hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 008818 470 AFETEENELSKME---------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 540 (552)
Q Consensus 470 A~~~~~~~l~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 540 (552)
|...++.++.... ...+.+||.++.+.+.+++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|+++|
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999773221 2337799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 008818 541 EKVLMVYCS 549 (552)
Q Consensus 541 ~~al~l~~~ 549 (552)
.++|-+-+.
T Consensus 513 hKaL~l~p~ 521 (611)
T KOG1173|consen 513 HKALALKPD 521 (611)
T ss_pred HHHHhcCCc
Confidence 999987653
No 28
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=3.2e-23 Score=180.38 Aligned_cols=296 Identities=14% Similarity=0.120 Sum_probs=231.4
Q ss_pred hHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 008818 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 172 (552)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~ 172 (552)
-|+.+..-|..-.++ ..|..||+.+|+++.+++.+|.+ +...+....+...+.+++++.|+...+....|.++.++|+
T Consensus 44 lGk~lla~~Q~sDAL-t~yHaAve~dp~~Y~aifrRaT~-yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDAL-THYHAAVEGDPNNYQAIFRRATV-YLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHH-HHHHHHHcCCchhHHHHHHHHHH-HhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 456666667777777 89999999999999999999999 8888999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHH
Q 008818 173 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 252 (552)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 252 (552)
+++|...|++.++.+|.+.........+..+.-+..+-.. ...++-.|+...|+......+++.|.++..+.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~q--------l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQ--------LKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHH--------HHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 9999999999999877543322211111111111111000 01134567779999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 332 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 332 (552)
.++.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+-.+-.-
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv---- 269 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV---- 269 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999987654322221110
Q ss_pred cccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 008818 333 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
...+.-+.-....++|.++++..++.++.+|..+. ....+..|+..-+++.+|+..+.+++.++|++..+
T Consensus 270 -----~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~ 343 (504)
T KOG0624|consen 270 -----VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQV 343 (504)
T ss_pred -----HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHH
Confidence 00001122233677888888888888888887433 34456677888888888888888888888876543
No 29
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-22 Score=184.46 Aligned_cols=324 Identities=13% Similarity=0.101 Sum_probs=255.4
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
.+..|+++.|+..|..++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+++..|..+|..+..+|+|++|+.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhccccc------------------------------------------------
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLA------------------------------------------------ 335 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~------------------------------------------------ 335 (552)
.|.+.|+.+|++...+..+..++.........
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99999999999998888887766322000000
Q ss_pred ---------------------------------------------------ccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 336 ---------------------------------------------------GAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 336 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
.......+|....+..++..|++.|..++
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 01111227888888999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHH------------
Q 008818 365 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA------------ 432 (552)
Q Consensus 365 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~------------ 432 (552)
.++ .+...+.+.+.+|+..|.+.+.+....++++.......-...++..... ..........+..+
T Consensus 252 el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r-~g~a~~k~~~~~~ai~~~~kaLte~R 329 (539)
T KOG0548|consen 252 ELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR-LGNAYTKREDYEGAIKYYQKALTEHR 329 (539)
T ss_pred hHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH-hhhhhhhHHhHHHHHHHHHHHhhhhc
Confidence 999 8899999999999999999999999988887655433222222221111 00000001111111
Q ss_pred -------HHHHHHHhhc---CCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHH
Q 008818 433 -------GNEMASILRE---GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVN 500 (552)
Q Consensus 433 -------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~ 500 (552)
.+.+.+.+.. ..-+.|....--...|..++..|+|..|+..|.+++. |.+...+.+.|.||.++|.+.
T Consensus 330 t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 330 TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH
Confidence 1222222221 1222344445556679999999999999999999876 455566779999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 501 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 501 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.|+..++++++++|+...+|...|.++..+.+|++|++.|++++++-|+
T Consensus 410 ~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 410 EALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999999999999999998765
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.6e-21 Score=174.32 Aligned_cols=277 Identities=11% Similarity=0.079 Sum_probs=178.2
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
-|.+.-.-...|.+...+.++++|+..|+...+.+|-. +.....+.+.-.+ .++-.+
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR---------l~dmdlySN~LYv--------------~~~~sk 314 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR---------LDDMDLYSNVLYV--------------KNDKSK 314 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc---------chhHHHHhHHHHH--------------HhhhHH
Confidence 46666666667777777777777777777776664432 1111111111000 000011
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 312 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (552)
---..+.+..++.-.++...-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|++++
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11112223333333344444556777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 008818 313 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 392 (552)
Q Consensus 313 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 392 (552)
|.+..+|+.+|+.|- -++...=|+-+|++++...|.+...|..||.||.++++.++|++
T Consensus 395 p~DyRAWYGLGQaYe---------------------im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYE---------------------IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred chhHHHHhhhhHHHH---------------------HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 777777777777766 66667777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHH
Q 008818 393 CLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFE 472 (552)
Q Consensus 393 ~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 472 (552)
+|.+++.....+. .++..+|.+|.+.++..+|..
T Consensus 454 Cykrai~~~dte~----------------------------------------------~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 454 CYKRAILLGDTEG----------------------------------------------SALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHHHHhccccch----------------------------------------------HHHHHHHHHHHHHHhHHHHHH
Confidence 7777776654332 355666666777777777777
Q ss_pred HHHhhhc---------chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Q 008818 473 TEENELS---------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 519 (552)
Q Consensus 473 ~~~~~l~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 519 (552)
.|.+-+. +....+..-|+..+.+.++|++|-.+..+++.-++...++
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea 543 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEA 543 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence 6666443 1122344457888888999999998888888776544333
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=7.9e-21 Score=195.54 Aligned_cols=400 Identities=11% Similarity=-0.038 Sum_probs=265.7
Q ss_pred CCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccch
Q 008818 118 GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARP 197 (552)
Q Consensus 118 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 197 (552)
.|......+..++. ....|++..|...|.++++.+|.++.+...+..++...|+.++|+.++++++ .|.+..
T Consensus 30 ~p~~~~~~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~----- 101 (822)
T PRK14574 30 NPAMADTQYDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS----- 101 (822)
T ss_pred CccchhHHHHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-----
Confidence 34444444444444 5666777777777777777777775443477777777777777777777777 232210
Q ss_pred hHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008818 198 ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 277 (552)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 277 (552)
. .....++.+ +...|++++|++.|+++++.+|+++.++..++.++...++.++|++.+++++..
T Consensus 102 ~-----~~llalA~l-----------y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 102 S-----RGLASAARA-----------YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred H-----HHHHHHHHH-----------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 0 111111222 234455677777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc----------------------
Q 008818 278 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------------------- 335 (552)
Q Consensus 278 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---------------------- 335 (552)
+|.+... ..++.++...++..+|+..|+++++.+|++...+..+..++........+
T Consensus 166 dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 166 DPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred CcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 7764443 44555555566666677777777777777777666655554332111000
Q ss_pred ---------------------------------------ccc--cc-----cccchhHHHhcCHHHHHHHHHHHHhcC-C
Q 008818 336 ---------------------------------------GAG--AN-----TGEGACLDQASAVNVAKECLLAALKAD-P 368 (552)
Q Consensus 336 ---------------------------------------~~~--~~-----~~~~~~~~~~~~~~~A~~~~~~al~~~-p 368 (552)
.+. .. ...-..+...|++.+++..|+...... |
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 000 00 012234456788888888888776544 2
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----cch--HHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhc
Q 008818 369 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC----MST--RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 442 (552)
Q Consensus 369 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~--~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (552)
--..+....|..|..+++.++|+.+|+.++.-.|.. ... ...+....+. . +.+..+...+......
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld-~-------e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE-S-------EQLDKAYQFAVNYSEQ 396 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-c-------ccHHHHHHHHHHHHhc
Confidence 235577788999999999999999999998866421 111 1222222221 1 1112222222222221
Q ss_pred -----------CCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHH
Q 008818 443 -----------GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAA 509 (552)
Q Consensus 443 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (552)
....+++-......++.++...|++.+|.+.+++.+. |.+...+..+|.++...|...+|+..++.+
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1123445566778889999999999999999999665 666677779999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 510 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 510 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
+.++|++..+...+|.++..+|++.+|....++.++.+|..
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999999999999999999988864
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.90 E-value=8e-23 Score=189.90 Aligned_cols=255 Identities=22% Similarity=0.209 Sum_probs=111.0
Q ss_pred ccCchhHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008818 224 ELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 301 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 301 (552)
++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 56778889999999776544 488999999999999999999999999999999999999999999988 799999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC--CCcHHHHHHHHH
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLAN 379 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~ 379 (552)
+..+.++.+..+ ++..+.....++. ..++++++...++++.... +.++.+|..+|.
T Consensus 97 ~~~~~~~~~~~~-~~~~l~~~l~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 97 LKLAEKAYERDG-DPRYLLSALQLYY---------------------RLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp ----------------------H-HH---------------------HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred cccccccccccc-ccchhhHHHHHHH---------------------HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 999999987654 4555555555555 8899999999999977654 678999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHH
Q 008818 380 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 459 (552)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (552)
++...|++++|+.+|+++++++|++.. ++..++.
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~----------------------------------------------~~~~l~~ 188 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPD----------------------------------------------ARNALAW 188 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HH----------------------------------------------HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHH----------------------------------------------HHHHHHH
Confidence 999999999999999999999998753 4455666
Q ss_pred HHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHH
Q 008818 460 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 537 (552)
Q Consensus 460 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 537 (552)
++...|+++++...+..... +.+...|..+|.++..+|++++|+.+|+++++.+|+++.++..+|.++...|+.++|.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 77788888876666655333 4555678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 008818 538 KCLEKVLMVY 547 (552)
Q Consensus 538 ~~~~~al~l~ 547 (552)
.+++++++..
T Consensus 269 ~~~~~~~~~l 278 (280)
T PF13429_consen 269 RLRRQALRLL 278 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999998765
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1e-19 Score=171.52 Aligned_cols=419 Identities=14% Similarity=0.088 Sum_probs=321.9
Q ss_pred hhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh
Q 008818 110 KMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 189 (552)
Q Consensus 110 ~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (552)
.+.+|+++.|.+...|.. +-.-+-|+.+++.+.++-+.-|.+..+|..-+.+-...|+.+.-.+...+++.....
T Consensus 398 lL~rAveccp~s~dLwlA-----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 398 LLERAVECCPQSMDLWLA-----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHHHhccchHHHHHH-----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 345666666666666655 344577888888888888888888888888888888888888888888887765443
Q ss_pred ccccccchhHHHHHHHhhh-------hcccccccCC--C----------ccccccCchhHHHHHHHHHHHHhcCcchHHH
Q 008818 190 CEADIARPELLSLVQIHHA-------QCLLPESSGD--N----------SLDKELEPEELEEILSKLKESMQSDTRQAVV 250 (552)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~--~----------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 250 (552)
+........++.-+..... .+.++..+|- . ......+.+.++-|...|..+++.+|....+
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl 552 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL 552 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH
Confidence 3333333333332222111 1111111111 1 0112345666788899999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 330 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 330 (552)
|...+..--..|..++-...+++++...|.....|...+.-+...|+...|...+.++++.+|++.+.|+.-..+.....
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~ 632 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEND 632 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccc
Confidence 99999998899999999999999999999999999999999999999999999999999999999988876655544321
Q ss_pred c------------ccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 331 G------------SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 331 ~------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
. ........++..+.+...+++.++|+.+++++++..|+....|..+|+++..+++.+.|...|...+
T Consensus 633 e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 633 ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 1 1111345566677777889999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhh
Q 008818 399 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 478 (552)
Q Consensus 399 ~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 478 (552)
+..|.....|..++...-... .......++..+...+|.+...|......-.+.|..+.|.....+++
T Consensus 713 k~cP~~ipLWllLakleEk~~------------~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 713 KKCPNSIPLWLLLAKLEEKDG------------QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred ccCCCCchHHHHHHHHHHHhc------------chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998887765322110 11234456666677788889999999999999999888888777766
Q ss_pred cchh--------------------------------hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 008818 479 SKME--------------------------------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 526 (552)
Q Consensus 479 ~~~~--------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 526 (552)
...+ ...+..+|..+....+++.|..+|.++++.+|++.++|..+-..
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 5322 23366788889999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHH
Q 008818 527 YYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~ 545 (552)
+...|.-++-.+.|.++..
T Consensus 861 el~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 9999998888888887764
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-20 Score=173.48 Aligned_cols=383 Identities=16% Similarity=0.102 Sum_probs=277.9
Q ss_pred hhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 008818 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 171 (552)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g 171 (552)
..|...+.-|++..++ ..|..||.++|.+--.+..+..+ +...+.++.+.+.-.+.++++|..+..|..+|..+.-+|
T Consensus 7 ~kgnaa~s~~d~~~ai-~~~t~ai~l~p~nhvlySnrsaa-~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAI-RLFTEAIMLSPTNHVLYSNRSAA-YASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHhhcccccHHHHH-HHHHHHHccCCCccchhcchHHH-HHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 4567788888999997 99999999999977777777666 777888888888888899999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhccccccchhHHHHHHHh----------------hhhcc---cc--------------cccCC
Q 008818 172 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH----------------HAQCL---LP--------------ESSGD 218 (552)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----------------~~~~~---~~--------------~~~g~ 218 (552)
+|++|+..|.+.|+.+|++..... .+..++ ..+.. .- ...+.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~-----gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKT-----GLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHH-----hHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 999999999999999887633111 000000 00000 00 00000
Q ss_pred CccccccCchhHHHHHHHHHHHH--------------hcCc---------------------chHHHHHHHHHHHHHcCC
Q 008818 219 NSLDKELEPEELEEILSKLKESM--------------QSDT---------------------RQAVVWNTLGLILLKSGR 263 (552)
Q Consensus 219 ~~~~~~~~~~~~~~A~~~~~~al--------------~~~p---------------------~~~~~~~~la~~~~~~~~ 263 (552)
.....++...++..|.-.+..+- ...| .-......+|...+...+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 00011112122222222111110 0011 013345679999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccccccccccc
Q 008818 264 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE 343 (552)
Q Consensus 264 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (552)
+..|++.|..++.++ .+...+.+.+.+|+..|.+.+.+....++++.......-+..++..+.. +
T Consensus 240 f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r--------------~ 304 (539)
T KOG0548|consen 240 FETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR--------------L 304 (539)
T ss_pred HHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH--------------h
Confidence 999999999999999 8888899999999999999999999998887765554444455554442 4
Q ss_pred chhHHHhcCHHHHHHHHHHHHhcC--------------------------CCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008818 344 GACLDQASAVNVAKECLLAALKAD--------------------------PKAAHIWANLANAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 344 ~~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 397 (552)
|..+...++++.|+.+|.+++... |.-..--...|..++..|+|..|+..|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 666667788888888888776543 222333445578888888888888888888
Q ss_pred HhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHh-
Q 008818 398 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN- 476 (552)
Q Consensus 398 l~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~- 476 (552)
+..+|++. ..|.+.+.+|...+.+..|+.....
T Consensus 385 Ikr~P~Da----------------------------------------------~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 385 IKRDPEDA----------------------------------------------RLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HhcCCchh----------------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888764 5677788888888999999888777
Q ss_pred -hhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 008818 477 -ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 542 (552)
Q Consensus 477 -~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 542 (552)
.+++....+|+..|.++..+.+|++|++.|+++++++|++.++...+..|+..+.......+.+++
T Consensus 419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 445666688999999999999999999999999999999999999999999875444444445444
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=170.58 Aligned_cols=382 Identities=14% Similarity=0.135 Sum_probs=269.1
Q ss_pred HhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccc
Q 008818 137 EKVSSLKTGLVHVAR--KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 214 (552)
Q Consensus 137 ~~~~~a~~~l~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (552)
.-+.++...++-+++ ..|+....-.++|.+|++..+|.+|+++|+-++..-|.-. ....+.+..+.|..
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-------k~~rikil~nigvt-- 285 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-------KDMRIKILNNIGVT-- 285 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-------hhhHHHHHhhcCee--
Confidence 334444444433332 3466666667777777777777777777777776644211 11112333333333
Q ss_pred ccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CCC
Q 008818 215 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------DPN 280 (552)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~p~ 280 (552)
.++.|.|+.|+..|+.+++..|+... -++|..|++..|+-++-.+.|.+.+.+ +|+
T Consensus 286 ---------fiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 286 ---------FIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred ---------EEecccchhhHhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 44555567777777777777776543 345666677777777777777777654 111
Q ss_pred C--------------------------------------------------------------HHHHHHHHHHHHHcCCH
Q 008818 281 N--------------------------------------------------------------CDCIGNLGIAYFQSGDM 298 (552)
Q Consensus 281 ~--------------------------------------------------------------~~~~~~la~~~~~~g~~ 298 (552)
+ .+.-.+.+.-|.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 1 00113445667888999
Q ss_pred HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhhcccccc---------------cccccccchhHHHhcCHHHHHHHHHH
Q 008818 299 EQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAG---------------AGANTGEGACLDQASAVNVAKECLLA 362 (552)
Q Consensus 299 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~ 362 (552)
+.|++.++-.-+.+... ..+-.++..+++.+++...++ +....+.|.+-...|++++|.+.|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999886554443332 233556666666665555443 33445578888899999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhc
Q 008818 363 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 442 (552)
Q Consensus 363 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (552)
++..+.....+++++|..+..+|+.++|+.+|-+.-.+--++...++.++...-.. .+.. .....+..
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l----ed~a--------qaie~~~q 583 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL----EDPA--------QAIELLMQ 583 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----hCHH--------HHHHHHHH
Confidence 99999999999999999999999999999999998888888887777766532110 0111 12234455
Q ss_pred CCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcch--hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Q 008818 443 GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW 520 (552)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 520 (552)
...+-|.+|.++..++.+|-+.|+-.+|+.++-....-. +....--||..|....-+++|+.+|+++--+.|+...-.
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 667778999999999999999999999999887766533 334444577789999999999999999999999998888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 521 ANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 521 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
..++.|+.+.|+|.+|...|+..-+.+|.
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999998877764
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=1.4e-20 Score=190.61 Aligned_cols=249 Identities=14% Similarity=0.054 Sum_probs=204.5
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 296 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 296 (552)
..+++++|+..|+++++.+|+++.+|..+|.+|... +++++|+..++++++++|+++.++..+|.++...|
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 346679999999999999999999999999887644 34889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH
Q 008818 297 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 376 (552)
Q Consensus 297 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 376 (552)
++++|+..|+++++++|+++.+++.+|.++. ..|++++|+..++++++++|.++..+..
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLF---------------------MAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 9999999999999999999999999999888 8999999999999999999998888777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHH
Q 008818 377 LANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 455 (552)
Q Consensus 377 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (552)
++.+++..|++++|+..+++++... |++ +..+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~----------------------------------------------~~~~~ 445 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDN----------------------------------------------PILLS 445 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccC----------------------------------------------HHHHH
Confidence 7878888999999999999998775 443 34566
Q ss_pred hHHHHHhchhhHHHHHHHHHhhhcc--hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 008818 456 GFAAVQKTHHEVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 533 (552)
Q Consensus 456 ~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 533 (552)
.+|.++...|++++|...+.+.... ....++..++..+...|+ .|...+++.++..-..+.-...+..+|...|+.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~ 523 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEA 523 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhh
Confidence 7777888889999999988775443 333456677777777774 777777776664433333334488888888888
Q ss_pred hHHHHHHHHHH
Q 008818 534 RSSGKCLEKVL 544 (552)
Q Consensus 534 ~~A~~~~~~al 544 (552)
+.+..+ +++.
T Consensus 524 ~~~~~~-~~~~ 533 (553)
T PRK12370 524 IAEKMW-NKFK 533 (553)
T ss_pred HHHHHH-HHhh
Confidence 888777 5554
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.4e-20 Score=174.80 Aligned_cols=292 Identities=13% Similarity=0.070 Sum_probs=246.4
Q ss_pred CChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHH
Q 008818 155 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 234 (552)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 234 (552)
++.++....+..++..++|.+..+.++..++.+|=. +. ...++.+ .+. +.|+..+=.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh------~~---~~~~~ia---~l~-----------el~~~n~Lf 298 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFH------LP---CLPLHIA---CLY-----------ELGKSNKLF 298 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC------cc---hHHHHHH---HHH-----------HhcccchHH
Confidence 567889999999999999999999999999986532 11 1122211 222 333335666
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
..-.+.++..|+.+..|+.+|..|...|++.+|..+|.++..++|....+|...|..+...|+.++|+.+|..|-++.|.
T Consensus 299 ~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 299 LLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 66678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 008818 315 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 394 (552)
Q Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 394 (552)
.-...+.+|.-+. +.++++-|..+|.+++.+.|.++-++..+|.+.+..+.|.+|..+|
T Consensus 379 ~hlP~LYlgmey~---------------------~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 379 CHLPSLYLGMEYM---------------------RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred CcchHHHHHHHHH---------------------HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 8877778887776 8999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHH
Q 008818 395 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 474 (552)
Q Consensus 395 ~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 474 (552)
+.++..-++.. .+. +.=...+.++|.++.+++.+++|+..+
T Consensus 438 ~~~l~~ik~~~-----------------------------------~e~----~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 438 QKALEVIKSVL-----------------------------------NEK----IFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHhhhcc-----------------------------------ccc----cchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99994332211 000 001136899999999999999999999
Q ss_pred Hhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 008818 475 ENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 529 (552)
Q Consensus 475 ~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 529 (552)
++++. +.+...+..+|.++..+|+++.|+.+|.++|.+.|++..+-..|+.+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99665 66667788999999999999999999999999999998777777765543
No 38
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=9.4e-20 Score=175.39 Aligned_cols=408 Identities=15% Similarity=0.086 Sum_probs=295.4
Q ss_pred hhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhC--CCChHHHHHHHHHH-HHcCCchHHHHHHHHHHH
Q 008818 109 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM--PKNAHAHFLLGLMY-QRLGQPLKAVSSYEKAEE 185 (552)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~--p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~ 185 (552)
+.|++++...-.....|+..+.. ....+.-..|...++..+... |.++..+...+.++ .+.+..++++++..+++.
T Consensus 344 e~fE~~~~~~~~~~e~w~~~als-~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 344 EQFEQALPFSFGEHERWYQLALS-YSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred HHHHHHhHhhhhhHHHHHHHHHH-HHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 56666666655666677776666 555566667777777777777 77777776666555 467889999999999998
Q ss_pred HHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHH
Q 008818 186 ILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ 265 (552)
Q Consensus 186 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 265 (552)
..-.. .... ....+...|.+|..+.......-.+.....+++..++++++.+|+|+.+.+.++.-|..+++.+
T Consensus 423 ~~~~~-----~~~l--~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~ 495 (799)
T KOG4162|consen 423 LLGGQ-----RSHL--KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLT 495 (799)
T ss_pred Hhhhh-----hhhh--hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHH
Confidence 53111 1111 2334455555555444332222233445578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccc
Q 008818 266 SSISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 344 (552)
Q Consensus 266 ~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (552)
.|.++.++++++ ..+++.+|..++.++...+++.+|+...+.++.-.|+|.........+-.
T Consensus 496 sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~----------------- 558 (799)
T KOG4162|consen 496 SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL----------------- 558 (799)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh-----------------
Confidence 999999999999 55779999999999999999999999999999998887665554444444
Q ss_pred hhHHHhcCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhh---------------
Q 008818 345 ACLDQASAVNVAKECLLAALKADPKAAH---------IWANLANAYYLTGDHRSSGKCLEKAAKL--------------- 400 (552)
Q Consensus 345 ~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~--------------- 400 (552)
..++.++|+..+...+.+...... .....+.......+..+|++.++++..+
T Consensus 559 ----~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 559 ----TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred ----hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 688899999988888776543222 2223333344455666677666665432
Q ss_pred ----CCCCcchHHHHHHHHHHhH--hhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHH
Q 008818 401 ----EPNCMSTRYAVAVSRIKDA--ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 474 (552)
Q Consensus 401 ----~p~~~~~~~~la~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 474 (552)
.|.....|+..-...+..+ ...... .+.....+.+...+.+..+..|+..|..+..+|+..+|...|
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~-------~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGN-------DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1222222222211111110 000000 112223445555666778889999999999999999999999
Q ss_pred Hhh--hcchhhhhhhhHHHHHHhhhhHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 475 ENE--LSKMEECAGAGESAFLDQASAVNVAKE--CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 475 ~~~--l~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
..+ ++|........+|.++.+.|+-.-|.. .+..+++++|.++++|+.+|.++.+.|+.++|.++|.-|+++-.+.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 985 457777788899999999999888877 9999999999999999999999999999999999999999998776
Q ss_pred CC
Q 008818 551 NL 552 (552)
Q Consensus 551 ~l 552 (552)
++
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 53
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=2.8e-20 Score=172.74 Aligned_cols=238 Identities=17% Similarity=0.136 Sum_probs=186.7
Q ss_pred ccCchhHHHHHHHHHHHHhcC---c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 008818 224 ELEPEELEEILSKLKESMQSD---T-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 299 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~---p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 299 (552)
....+..+.++..+.+++... | ..+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|+++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 345678899999999999643 3 347789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008818 300 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 379 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 379 (552)
+|+..|+++++++|++..++.++|.++. ..|++++|+..|+++++.+|+++..... ..
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~ 173 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALY---------------------YGGRYELAQDDLLAFYQDDPNDPYRALW-LY 173 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HH
Confidence 9999999999999999999999999888 8999999999999999999998742222 22
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHH
Q 008818 380 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 459 (552)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (552)
+....+++++|+..|.+++...+... |. .+.
T Consensus 174 l~~~~~~~~~A~~~l~~~~~~~~~~~------------------------------------------------~~-~~~ 204 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYEKLDKEQ------------------------------------------------WG-WNI 204 (296)
T ss_pred HHHccCCHHHHHHHHHHHHhhCCccc------------------------------------------------cH-HHH
Confidence 34567889999999987765433211 11 122
Q ss_pred HHhchhhH--HHHHHHHHhh------hcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHc
Q 008818 460 VQKTHHEV--AAAFETEENE------LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLT 530 (552)
Q Consensus 460 ~~~~~~~~--~~A~~~~~~~------l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~ 530 (552)
++...|+. ++++..+... +.+....+|+.+|.++...|++++|+.+|+++++.+| ++.+..+.+..+....
T Consensus 205 ~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 205 VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 23333333 3344444432 2334457899999999999999999999999999996 6777777776666554
Q ss_pred CC
Q 008818 531 GD 532 (552)
Q Consensus 531 g~ 532 (552)
++
T Consensus 285 ~~ 286 (296)
T PRK11189 285 QD 286 (296)
T ss_pred hh
Confidence 44
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=1.4e-19 Score=168.19 Aligned_cols=221 Identities=15% Similarity=0.103 Sum_probs=180.0
Q ss_pred HHcCCHHHHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc
Q 008818 259 LKSGRLQSSISVLSSLLAVD---P-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 334 (552)
Q Consensus 259 ~~~~~~~~A~~~~~~al~~~---p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 334 (552)
...++.+.++..+.+++... | ..+..|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~------- 109 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT------- 109 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------
Confidence 33457788999999999643 3 337789999999999999999999999999999999999999999998
Q ss_pred cccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 008818 335 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 414 (552)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 414 (552)
..|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++..
T Consensus 110 --------------~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~------- 168 (296)
T PRK11189 110 --------------QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR------- 168 (296)
T ss_pred --------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------
Confidence 99999999999999999999999999999999999999999999999999999987521
Q ss_pred HHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHH
Q 008818 415 RIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLD 494 (552)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~ 494 (552)
..|.. +....+++++|+..+.+.....+...|. .+.+..
T Consensus 169 -------------------------------------~~~~~---l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~ 207 (296)
T PRK11189 169 -------------------------------------ALWLY---LAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEF 207 (296)
T ss_pred -------------------------------------HHHHH---HHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHH
Confidence 01221 2234567888998887766544444443 455666
Q ss_pred hhhhHHHH--H----HHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 495 QASAVNVA--K----ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 495 ~~~~~~~A--~----~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
..|++..+ + ..++..+++.|...++|+.+|.++...|++++|+.+|++|+++.+
T Consensus 208 ~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 208 YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 66665433 2 223334467778889999999999999999999999999999875
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=1.3e-19 Score=183.51 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=178.6
Q ss_pred hCCCChH--HHHHHHHHHHHc---CCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccC
Q 008818 152 KMPKNAH--AHFLLGLMYQRL---GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE 226 (552)
Q Consensus 152 ~~p~~~~--~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (552)
..|.+.+ .++..|..+... +.+++|+.+|+++++++|+.. ..+..++.++..++.. .....
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a------------~a~~~La~~~~~~~~~--g~~~~ 316 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI------------APYCALAECYLSMAQM--GIFDK 316 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH------------HHHHHHHHHHHHHHHc--CCccc
Confidence 4455554 345556544433 346788888888888876531 1122222222111110 00124
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
.+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Q 008818 307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTG 385 (552)
Q Consensus 307 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 385 (552)
++++++|.++..+..++.+++ ..|++++|+..+++++... |+++.++..+|.++..+|
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~---------------------~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITY---------------------YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHH---------------------hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 999999999877666665555 6889999999999999875 788999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHH
Q 008818 386 DHRSSGKCLEKAAKLEPNCMSTRYAVA 412 (552)
Q Consensus 386 ~~~~A~~~~~~al~~~p~~~~~~~~la 412 (552)
++++|...++++....|....+...++
T Consensus 456 ~~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 456 KHELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred CHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999999999998888777654444443
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=1.8e-19 Score=176.43 Aligned_cols=303 Identities=18% Similarity=0.219 Sum_probs=234.8
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (552)
..|++++|+..+..+++.+|.++.+|+.||.+|..+|+.+++...+-.|-.++|.+.+.|..++.....+|++.+|+-+|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHH
Q 008818 306 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANLANA 380 (552)
Q Consensus 306 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~ 380 (552)
.++++.+|.+....+..+.++. +.|+...|...|.+++...|. ........+..
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~---------------------~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQ---------------------KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHH---------------------HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 9999999999999988888887 999999999999999999993 12233445778
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHhHh-----hccCc-------hHHHhHHH-----HHHHHHhh
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEPNC--MSTRYAVAVSRIKDAE-----RSQEP-------TEQLSWAG-----NEMASILR 441 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~l~~~~-----~~~~~-------~~~~~~~~-----~~~~~~~~ 441 (552)
+...++-+.|++.++.++....+- ......++...+.... ..... .+.-.+.. ........
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 888888899999999999843321 1222222222221100 00000 00000000 00001122
Q ss_pred cCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc---chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC-cH
Q 008818 442 EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK-AA 517 (552)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~ 517 (552)
......++.+..+..++.+..+.++..+++..+...-+ ......++.++..|...|++.+|+.+|..++...+. +.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 22233334444577888888888888899888776433 334466789999999999999999999999988765 57
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 518 HIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 518 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.+|+.+|.||..+|.+++|+++|++++.+.|.
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999998775
No 43
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=7.1e-21 Score=177.68 Aligned_cols=232 Identities=20% Similarity=0.266 Sum_probs=170.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
+++.|++.+|.-.|+.++..+|.++++|..||.++...++-..|+..++++++++|++..++..||..|...|.-.+|++
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAY 381 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~ 381 (552)
++.+.+...|....... + .. .........+.....+..-.+.|..+....| .++++...||.+|
T Consensus 375 ~L~~Wi~~~p~y~~l~~--a--~~----------~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVS--A--GE----------NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHHHHHhCccchhccc--c--Cc----------cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 99999988775432111 0 00 0000000011122234556677777777777 6899999999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHH
Q 008818 382 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 461 (552)
Q Consensus 382 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
...|+|++|+.+|+.||...|++. ..|..+|-.+
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~----------------------------------------------~lWNRLGAtL 474 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDY----------------------------------------------LLWNRLGATL 474 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchH----------------------------------------------HHHHHhhHHh
Confidence 999999999999999999999874 3455555555
Q ss_pred hchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC
Q 008818 462 KTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 515 (552)
Q Consensus 462 ~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 515 (552)
..-.+.++|+..|++++. |...+++|+||++++.+|.|++|+++|-.||.+.+.
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 555555555555555333 333455555555555555555555555555555443
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=4.3e-19 Score=173.28 Aligned_cols=298 Identities=15% Similarity=0.099 Sum_probs=220.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHH
Q 008818 161 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 240 (552)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 240 (552)
...|.+....|+++.|.+.+.++.+..|++ ... +...+.+ +...|+++.|..++.++
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~-------~~~-----~llaA~a-----------a~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEP-------VLN-----LIKAAEA-----------AQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCC-------HHH-----HHHHHHH-----------HHHCCCHHHHHHHHHHH
Confidence 456778888889999988888887764432 111 1112222 23456778899999888
Q ss_pred HhcCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008818 241 MQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 319 (552)
Q Consensus 241 l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 319 (552)
.+..|++. .+....+.++...|++++|...+++.++..|+++.++..++.++...|++++|++.+.+..+....++...
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~ 224 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEF 224 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 88888775 46666799999999999999999999999999999999999999999999999999999998755444433
Q ss_pred H----HHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHcCChHHHH
Q 008818 320 I----NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP----KAAHIWANLANAYYLTGDHRSSG 391 (552)
Q Consensus 320 ~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~ 391 (552)
. ....-+. ..+..+++.+.+.++.+..| +++.++..++..+...|++++|.
T Consensus 225 ~~l~~~a~~~~l---------------------~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 225 ADLEQKAEIGLL---------------------DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHH---------------------HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 1 1111112 34445666777777777777 58999999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHH
Q 008818 392 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 471 (552)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 471 (552)
..++++++..|++....+....... ....++...++
T Consensus 284 ~~l~~~l~~~pd~~~~~~~~l~~~~--------------------------------------------~l~~~~~~~~~ 319 (409)
T TIGR00540 284 EIIFDGLKKLGDDRAISLPLCLPIP--------------------------------------------RLKPEDNEKLE 319 (409)
T ss_pred HHHHHHHhhCCCcccchhHHHHHhh--------------------------------------------hcCCCChHHHH
Confidence 9999999999988754322111000 00112223334
Q ss_pred HHHHhhhc--chhh--hhhhhHHHHHHhhhhHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008818 472 ETEENELS--KMEE--CAGAGESAFLDQASAVNVAKECLL--AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 472 ~~~~~~l~--~~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 545 (552)
..+++.+. +.+. .....+|+++.+.|+|++|.++|+ .+++..|+... +..+|.++.+.|+.++|.++|++++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444333 4444 445588999999999999999999 68888897665 55999999999999999999999988
Q ss_pred Hh
Q 008818 546 VY 547 (552)
Q Consensus 546 l~ 547 (552)
+.
T Consensus 399 ~~ 400 (409)
T TIGR00540 399 LM 400 (409)
T ss_pred HH
Confidence 76
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.9e-19 Score=160.76 Aligned_cols=277 Identities=17% Similarity=0.107 Sum_probs=223.3
Q ss_pred cccCchhHHHHHHHHHHHHhcCcchH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 008818 223 KELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKS--GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 299 (552)
Q Consensus 223 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 299 (552)
.+++.|+++.|++.++-.-+.+.... .+-.+|..+++.+ .++..|.++-..++.++..++.++.+.|.+-+..|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 46778888888888776655554432 2445566665554 36788888888889889889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008818 300 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 379 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 379 (552)
+|.+.|+.++..+..+.++++++|..+. .+|++++|+++|-+.-.+--+++.+++.++.
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e---------------------~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAE---------------------ALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHH---------------------HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999988887 8999999999999988777788999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHH
Q 008818 380 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 459 (552)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (552)
+|..+.+..+|+++|-++..+-|+++..+..++...-++..+++ ..+..-....-.|.+.+....++.
T Consensus 567 iye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq------------afq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ------------AFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh------------hhhhhhhcccccCcchHHHHHHHH
Confidence 99999999999999999999999999888777664433322211 111112222334566677888999
Q ss_pred HHhchhhHHHHHHHHHhh--hcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 008818 460 VQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 532 (552)
Q Consensus 460 ~~~~~~~~~~A~~~~~~~--l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 532 (552)
.|....-+++|+..+.++ +.+....-...++.|+.+.|+|..|...|+..-...|.+.+.+..|-++.-.+|-
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999984 3454445556889999999999999999999999999999999999888876664
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=6e-18 Score=174.45 Aligned_cols=352 Identities=11% Similarity=-0.002 Sum_probs=263.3
Q ss_pred HhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhH
Q 008818 151 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 230 (552)
Q Consensus 151 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 230 (552)
-..|..+...+..+.+..+.|+++.|+..|+++++.+|.... ... .+..++ ...|+.
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~-----av~-------dll~l~-----------~~~G~~ 84 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG-----QVD-------DWLQIA-----------GWAGRD 84 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh-----hHH-------HHHHHH-----------HHcCCc
Confidence 467999999999999999999999999999999999776421 111 111111 233566
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
++|+..+++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++..
T Consensus 85 ~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 85 QEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence 99999999999444555556666688999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 390 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 390 (552)
.+|.+... ..++.++. ..++..+|++.++++++.+|++..++..+..++...|-...|
T Consensus 165 ~dp~~~~~-l~layL~~---------------------~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a 222 (822)
T PRK14574 165 RDPTVQNY-MTLSYLNR---------------------ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPA 222 (822)
T ss_pred cCcchHHH-HHHHHHHH---------------------hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 99985443 33433333 566777799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHH--HHHHHHHHhHh----hccCchHHHhHHHHHHHHHhhcCCCCCCC---CHHHHHhHHHHH
Q 008818 391 GKCLEKAAKLEPNCMSTRY--AVAVSRIKDAE----RSQEPTEQLSWAGNEMASILREGDPVQIE---PPIAWAGFAAVQ 461 (552)
Q Consensus 391 ~~~~~~al~~~p~~~~~~~--~la~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 461 (552)
.+..++--.........+. ..+...+..+. ...+....+..+...+..++......++. ...+....-.++
T Consensus 223 ~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 223 LRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 9776653222221111111 11111221110 11122334455666666666644433322 234556677778
Q ss_pred hchhhHHHHHHHHHhhhc---chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCC
Q 008818 462 KTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLTGD 532 (552)
Q Consensus 462 ~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~ 532 (552)
...+++.+++..|+.... +.+..+....|..|+..++.++|+..|+.++...| ........|-..|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 889999999999998553 45667777899999999999999999999988653 234445778889999999
Q ss_pred hhHHHHHHHHHHHHh
Q 008818 533 HRSSGKCLEKVLMVY 547 (552)
Q Consensus 533 ~~~A~~~~~~al~l~ 547 (552)
+++|..++++..+.-
T Consensus 383 ~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 383 LDKAYQFAVNYSEQT 397 (822)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988743
No 47
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.85 E-value=6e-19 Score=173.69 Aligned_cols=399 Identities=13% Similarity=0.070 Sum_probs=281.7
Q ss_pred hhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Q 008818 109 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 188 (552)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (552)
..|-+++.+++....++.++|.. +..--+...|.++|.++.++||.++.++-..+..|.+..+++.|....-.+-+..|
T Consensus 479 ~ali~alrld~~~apaf~~LG~i-Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~ 557 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQI-YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP 557 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch
Confidence 34455666666666666666666 44444666666666666666666666666666666666666666665444433321
Q ss_pred hccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHH
Q 008818 189 RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI 268 (552)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 268 (552)
. .. ....|.. .|-. +++.+++.+|+..|+.+++.+|.+..+|..+|.+|...|++..|+
T Consensus 558 a---------~~-~k~nW~~-------rG~y----yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 558 A---------FA-CKENWVQ-------RGPY----YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred H---------HH-HHhhhhh-------cccc----ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 1 11 0111112 3444 778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHH
Q 008818 269 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 348 (552)
Q Consensus 269 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (552)
+.|.++..++|.+.-..+..+.+...+|+|.+|+..+...+............++.++++. +..+.
T Consensus 617 KvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~--------------akd~~ 682 (1238)
T KOG1127|consen 617 KVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD--------------AKDSA 682 (1238)
T ss_pred HhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--------------HHHHH
Confidence 9999999999999999999999999999999999999999988777777777777776632 22222
Q ss_pred HhcCHHHHHHHHHH-------HHhcC-CCcHHHHHHHHHHHHH-----------------------cCCh------HHHH
Q 008818 349 QASAVNVAKECLLA-------ALKAD-PKAAHIWANLANAYYL-----------------------TGDH------RSSG 391 (552)
Q Consensus 349 ~~~~~~~A~~~~~~-------al~~~-p~~~~~~~~la~~~~~-----------------------~~~~------~~A~ 391 (552)
..|-..+|...+++ ++... -++...|..+|.+..- ++.. --+.
T Consensus 683 ~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~ 762 (1238)
T KOG1127|consen 683 ITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGY 762 (1238)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHH
Confidence 33434444444444 33333 3344444444443221 1111 1244
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHH
Q 008818 392 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 471 (552)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 471 (552)
+++-..+.+... +..|++++...++......+.......+..-+.+.++ ...++...|..+|.+ ..-|++.-|.
T Consensus 763 ~c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~----L~ann~~~WnaLGVl-sg~gnva~aQ 836 (1238)
T KOG1127|consen 763 ECGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS----LCANNEGLWNALGVL-SGIGNVACAQ 836 (1238)
T ss_pred HHhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH----HhhccHHHHHHHHHh-hccchhhhhh
Confidence 444444444332 5678888888777666555555444444444444333 344667899999998 6668999888
Q ss_pred HHHHh--hhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 472 ETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 472 ~~~~~--~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
-.|.+ .+.+.....|.++|.++.+..+++-|...|.++..++|.+...|...+.+....|+.-++...|....++..+
T Consensus 837 HCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~ 916 (1238)
T KOG1127|consen 837 HCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSK 916 (1238)
T ss_pred hhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc
Confidence 88887 4557777889999999999999999999999999999999999999999999999999999999886666543
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=3.9e-18 Score=161.00 Aligned_cols=366 Identities=17% Similarity=0.093 Sum_probs=297.0
Q ss_pred HhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHH
Q 008818 97 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKA 176 (552)
Q Consensus 97 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 176 (552)
+.+.+-...+. ..|..+|..+|.....|...... ...-+..+.....|++++...|.....|...+..++..|+...|
T Consensus 526 ~~k~~~~~car-AVya~alqvfp~k~slWlra~~~-ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECAR-AVYAHALQVFPCKKSLWLRAAMF-EKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHH-HHHHHHHhhccchhHHHHHHHHH-HHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence 33334333443 56888999999988888775555 55567788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 008818 177 VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL 256 (552)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 256 (552)
...+.++++.+|.++ .++.....+ .....+++.|..+|.++....|. ..+|+.-+.
T Consensus 604 r~il~~af~~~pnse------------eiwlaavKl-----------e~en~e~eraR~llakar~~sgT-eRv~mKs~~ 659 (913)
T KOG0495|consen 604 RVILDQAFEANPNSE------------EIWLAAVKL-----------EFENDELERARDLLAKARSISGT-ERVWMKSAN 659 (913)
T ss_pred HHHHHHHHHhCCCcH------------HHHHHHHHH-----------hhccccHHHHHHHHHHHhccCCc-chhhHHHhH
Confidence 999999999876542 122222211 34667789999999999987776 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccc
Q 008818 257 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 336 (552)
Q Consensus 257 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 336 (552)
+...+++.++|+..++++++..|+....|..+|+++.++++.+.|...|...++..|+....|..++.+-.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE--------- 730 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE--------- 730 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred cccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 008818 337 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l 416 (552)
..|+...|...++++.-.+|++...|......-.+.|+.+.|...+.+|++..|++...|..-....-
T Consensus 731 ------------k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 731 ------------KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred ------------HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 78899999999999999999999999999999999999999999999999999998766643322100
Q ss_pred HhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHH
Q 008818 417 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLD 494 (552)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~ 494 (552)
...+. ......++. ...++.+....+..+....++++|.+.|.+++. +...++|...-..+.
T Consensus 799 -~~~rk-----------Tks~DALkk----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 799 -RPQRK-----------TKSIDALKK----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL 862 (913)
T ss_pred -Ccccc-----------hHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH
Confidence 00000 001111111 235678999999999999999999999999776 555567666666888
Q ss_pred hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 008818 495 QASAVNVAKECLLAALKADPKAAHIWANLAN 525 (552)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 525 (552)
+.|.-++-.+.|.+...-.|.+.+.|.....
T Consensus 863 ~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999999999988876654
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=9.7e-19 Score=158.84 Aligned_cols=203 Identities=19% Similarity=0.210 Sum_probs=181.5
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 246 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 246 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
..+..+..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..|++++...|.+...+..++.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 326 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
+. ..|++++|+..|++++... +.....+..+|.++...|++++|...|.+++..+|+
T Consensus 109 ~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 109 LC---------------------QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HH---------------------HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 87 8999999999999999853 456778999999999999999999999999999887
Q ss_pred CcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhh
Q 008818 404 CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 483 (552)
Q Consensus 404 ~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 483 (552)
+...+.
T Consensus 168 ~~~~~~-------------------------------------------------------------------------- 173 (234)
T TIGR02521 168 RPESLL-------------------------------------------------------------------------- 173 (234)
T ss_pred ChHHHH--------------------------------------------------------------------------
Confidence 643222
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 484 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
.+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+...+
T Consensus 174 ----~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 174 ----ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 233367788899999999999999988899999999999999999999999988877654
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=6e-21 Score=177.32 Aligned_cols=258 Identities=18% Similarity=0.150 Sum_probs=98.3
Q ss_pred HHHHhhhchhhHhhhhhhhhhhhh--CCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 008818 94 GKKINKLGKCRSRISSKMDSALEF--GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 171 (552)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~--~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g 171 (552)
+..+.+.|+...++ ..+.+.+.. .|++...|...|.. ....+.++.+..++++++..++.++..+..++.+ ...+
T Consensus 15 A~~~~~~~~~~~Al-~~L~~~~~~~~~~~~~~~~~~~a~L-a~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKAL-EVLKKAAQKIAPPDDPEYWRLLADL-AWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc-ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccc
Confidence 34445555555554 455443333 25566677777766 6777777777777777777777777777777777 6777
Q ss_pred CchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcC--cchHH
Q 008818 172 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--TRQAV 249 (552)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~ 249 (552)
++++|+.++.++.+..++ +..+ .....+ +...++++++...++++.... +.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~-------~~~l------~~~l~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 147 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGD-------PRYL------LSALQL-----------YYRLGDYDEAEELLEKLEELPAAPDSAR 147 (280)
T ss_dssp ---------------------------------------H------------HHHTT-HHHHHHHHHHHHH-T---T-HH
T ss_pred cccccccccccccccccc-------cchh------hHHHHH-----------HHHHhHHHHHHHHHHHHHhccCCCCCHH
Confidence 777777777777665321 1111 111111 234455677777777765443 56677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 329 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 329 (552)
.|..+|.++.+.|++++|+.+|+++++++|+++.++..++.++...|+++++...+....+..|.++..+..+|.++.
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-- 225 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL-- 225 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc--
Confidence 777788888888888888888888888888888888788888877788877777777777766777777777777776
Q ss_pred hcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 330 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
.+|++++|+.+|+++++.+|+++.++..+|.++...|+.++|..++++++.
T Consensus 226 -------------------~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 226 -------------------QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -------------------HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred -------------------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 778888888888888888888888888888888888888888888777765
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=169.71 Aligned_cols=261 Identities=18% Similarity=0.171 Sum_probs=217.6
Q ss_pred hhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 008818 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 171 (552)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g 171 (552)
.+|..+.+-|..-.++ -.|+.||..+|....+|..+|.+ .-..+.-..+..++.++++++|+|.+++..||..|...|
T Consensus 290 ~eG~~lm~nG~L~~A~-LafEAAVkqdP~haeAW~~LG~~-qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAA-LAFEAAVKQDPQHAEAWQKLGIT-QAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHhcCCchHHH-HHHHHHHhhChHHHHHHHHhhhH-hhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 3788899999966665 89999999999999999999999 888888899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCc--chHH
Q 008818 172 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT--RQAV 249 (552)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~ 249 (552)
.-.+|+.++.+.+...|.... ...+..-..-+. .........+..-.+.|-.+....| .+++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~--------------l~~a~~~~~~~~--~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd 431 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVH--------------LVSAGENEDFEN--TKSFLDSSHLAHIQELFLEAARQLPTKIDPD 431 (579)
T ss_pred hHHHHHHHHHHHHHhCccchh--------------ccccCccccccC--CcCCCCHHHHHHHHHHHHHHHHhCCCCCChh
Confidence 999999999999987442110 000000000000 0113455566778888888888888 7899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 329 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 329 (552)
++..||.+|.-.|+|++|+.+|+.||..+|++...|..||-.+..-.+.++|+..|++|+++.|....+++++|..++
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m-- 509 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM-- 509 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHcCChHHHH
Q 008818 330 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWANLANAYYLTGDHRSSG 391 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~ 391 (552)
.+|.|++|+++|-.+|.+.+. +-.+|..|=.++...++.+-+.
T Consensus 510 -------------------NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 510 -------------------NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred -------------------hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999999988654 1246666666666666665443
No 52
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=5.6e-18 Score=177.70 Aligned_cols=369 Identities=11% Similarity=0.059 Sum_probs=247.2
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
+...+.++.|.+.|++.. ..+...|..+...|.+.|++++|+..|+++++..+.+.. ..+..........+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~---~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~----~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMP---ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP----RTFVVMLRASAGLGSA 240 (697)
T ss_pred HhcCCCHHHHHHHHhcCC---CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh----hhHHHHHHHHhcCCcH
Confidence 445567777777777642 235678899999999999999999999998875332211 0111111111000000
Q ss_pred ---------ccccC---C-----CccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 213 ---------PESSG---D-----NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 275 (552)
Q Consensus 213 ---------~~~~g---~-----~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 275 (552)
....| + .....|.+.|++++|...|++.. +.+..+|..+...|.+.|++++|+..|++..
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 00000 0 00122455666677777776653 2355677777777777777777777777765
Q ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCH
Q 008818 276 AVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 353 (552)
Q Consensus 276 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (552)
... .-+...+..+..++...|++++|.+.+..+++.. +.+...+..+...|. +.|++
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~---------------------k~G~~ 376 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS---------------------KWGRM 376 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH---------------------HCCCH
Confidence 532 1235567777777777777777777777777654 334445555555554 99999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHhHhhccCchHHHhH
Q 008818 354 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSW 431 (552)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~ 431 (552)
++|...|++..+ | +...|..+...|.+.|+.++|++.|++..+. .|+... +...+...... ..+..
T Consensus 377 ~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~a~~~~-------g~~~~ 444 (697)
T PLN03081 377 EDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT--FLAVLSACRYS-------GLSEQ 444 (697)
T ss_pred HHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHhcC-------CcHHH
Confidence 999999998764 3 5778999999999999999999999998874 444322 21111111111 11122
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 008818 432 AGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (552)
+...+..... ...+.| +...|..+...+.+.|++++|.+.+.+.....+...|..+...+...|+++.|...+++.++
T Consensus 445 a~~~f~~m~~-~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSE-NHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHH-hcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 2222222222 122222 23578899999999999999999998754444556788888899999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 512 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 512 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
+.|++...|..++.+|...|++++|.+.+++..+.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987654
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.9e-20 Score=164.30 Aligned_cols=283 Identities=12% Similarity=0.038 Sum_probs=231.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
+++..+|.+|+..|..+++..|+++..|.+.+.+++..|+|++|.-..++.++++|.....+...+.++..+++..+|.+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccc------cccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAG------AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 377 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 377 (552)
.++..- ++ ..+..+.......... .....-.+.|+.-.|++++|+..--..+++++.+..+++..
T Consensus 139 ~~~~~~--------~~-~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 139 KLKSKQ--------AY-KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR 209 (486)
T ss_pred Hhhhhh--------hh-HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence 776211 00 0000000000000000 00011135566689999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhH
Q 008818 378 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 457 (552)
Q Consensus 378 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (552)
|.+++..++.+.|+.+|++++.++|++......... +..-..|...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~----------------------------------~k~le~~k~~ 255 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM----------------------------------PKKLEVKKER 255 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhh----------------------------------HHHHHHHHhh
Confidence 999999999999999999999999998654432211 1112468888
Q ss_pred HHHHhchhhHHHHHHHHHhhhcchhh------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 008818 458 AAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 531 (552)
Q Consensus 458 ~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 531 (552)
|+-.++.|++..|.+.|..++...+. ..++++|.+..++|+.++|+..++.+++++|....++...|.|+..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998774443 347789999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 008818 532 DHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 532 ~~~~A~~~~~~al~l~~~ 549 (552)
+|++|++.|++++++-.+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987543
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.83 E-value=3.8e-17 Score=154.62 Aligned_cols=369 Identities=14% Similarity=0.131 Sum_probs=256.3
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccc
Q 008818 134 SREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (552)
+..+.+....+.++.+++..|++++.+...|..+..+|+-++|....+.++..++.. ...|+.+|.+
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------------~vCwHv~gl~- 84 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------------HVCWHVLGLL- 84 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc------------chhHHHHHHH-
Confidence 566777788888889999999999999999999999999999999999999875432 2456677766
Q ss_pred cccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 293 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 293 (552)
+....+|++|+++|+.|+..+|+|..+|..++.+..++++++.....-.+.++..|.....|...+..+.
T Consensus 85 ----------~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 85 ----------QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQH 154 (700)
T ss_pred ----------HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc
Q 008818 294 QSGDMEQSAKCFQDLILKD---QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 370 (552)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (552)
..|++..|....+...+.. |+....-.....++. ..+..+.|.+++|++.+..--..--+.
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~----------------n~i~~E~g~~q~ale~L~~~e~~i~Dk 218 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ----------------NQILIEAGSLQKALEHLLDNEKQIVDK 218 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH----------------HHHHHHcccHHHHHHHHHhhhhHHHHH
Confidence 9999999999988877654 333222222222222 223336666777766665543333334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH--HhHhhcc-----------Cch-----------
Q 008818 371 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI--KDAERSQ-----------EPT----------- 426 (552)
Q Consensus 371 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l--~~~~~~~-----------~~~----------- 426 (552)
.......|.++..++++++|...|...+..+|++...+..+-.... ....... ...
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL 298 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh
Confidence 5555666777777788888888888888777777655443322111 0000000 000
Q ss_pred --HHHhHH-HHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhh---HHHHHHHHHhhhcch------------hh----h
Q 008818 427 --EQLSWA-GNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELSKM------------EE----C 484 (552)
Q Consensus 427 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~------------~~----~ 484 (552)
..+... ...+...++.+.+ .+...+-..|..... .++-+..|...+... ++ .
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p------~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVP------SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCC------chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 000000 0111122222221 222222222222111 112222333333211 11 3
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 485 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
..+.++..+...|+++.|..+++.|+...|.-.+.+...|+++...|++++|..+++++-++-
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 356888899999999999999999999999999999999999999999999999999987764
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=3.4e-18 Score=141.80 Aligned_cols=141 Identities=19% Similarity=0.189 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
..+...||.-|+..|++..|...++++|+.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+.+++.|..+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 328 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
..|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+++
T Consensus 115 ---------------------~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 115 ---------------------AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred ---------------------hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 889999999999999974 344678999999999999999999999999999999887
Q ss_pred chHH
Q 008818 406 STRY 409 (552)
Q Consensus 406 ~~~~ 409 (552)
....
T Consensus 174 ~~~l 177 (250)
T COG3063 174 PALL 177 (250)
T ss_pred hHHH
Confidence 5443
No 56
>PLN02789 farnesyltranstransferase
Probab=99.83 E-value=3.3e-18 Score=157.94 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HHHHHH
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM--EQSAKC 304 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~ 304 (552)
++.++|+..+.++++++|.+..+|..++.++..+| ++++++..+.+++..+|++..+|..++.++..+|+. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 44589999999999999999999999999999998 679999999999999999999999999999988874 788999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 008818 305 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 384 (552)
Q Consensus 305 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 384 (552)
++++++.+|.+..+|...+.++. ..|+++++++++.++|+.+|.+..+|+.++.+....
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~---------------------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLR---------------------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999998888 788899999999999999999999999999988776
Q ss_pred ---CCh----HHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhH
Q 008818 385 ---GDH----RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 457 (552)
Q Consensus 385 ---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (552)
|.+ ++++.+..+++.++|++..+|..+...
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~l------------------------------------------- 226 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGL------------------------------------------- 226 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHH-------------------------------------------
Confidence 333 468888889999999887776554331
Q ss_pred HHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 008818 458 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 530 (552)
Q Consensus 458 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 530 (552)
+...+ ...++..+|+..+.+++..+|.++.++..|+.+|...
T Consensus 227 ---l~~~~----------------------------~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 227 ---FKDDK----------------------------EALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ---HhcCC----------------------------cccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 11100 0023455677888888888899999999999998753
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=2.7e-17 Score=159.75 Aligned_cols=304 Identities=11% Similarity=0.005 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHH
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 238 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 238 (552)
..+..|......|++++|.+...++-+..+ .|.... ...+.+ ....|+++.|..++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-------~p~l~~-----llaA~a-----------A~~~g~~~~A~~~l~ 142 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-------QPVVNY-----LLAAEA-----------AQQRGDEARANQHLE 142 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-------chHHHH-----HHHHHH-----------HHHCCCHHHHHHHHH
Confidence 345667888889999999977776544310 122211 111111 246788899999999
Q ss_pred HHHhcCcchHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008818 239 ESMQSDTRQAVV-WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 317 (552)
Q Consensus 239 ~al~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 317 (552)
++.+.+|++... ....+.++...|++++|+..++++++.+|+++.++..++.+|...|++++|+..+.+..+..+.++.
T Consensus 143 ~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 143 RAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 999999987543 3455999999999999999999999999999999999999999999999999999999988776554
Q ss_pred HHHHHH-HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008818 318 ALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 396 (552)
Q Consensus 318 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 396 (552)
....+- ..+... ........+-+...+.++..-+..|+++.++..++..+...|+.++|...+++
T Consensus 223 ~~~~l~~~a~~~l--------------~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 223 HRAMLEQQAWIGL--------------MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333111 111100 00001223344445555555555677999999999999999999999999999
Q ss_pred HHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHh
Q 008818 397 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 476 (552)
Q Consensus 397 al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 476 (552)
+++..++ +... ...+. ...++.++++...+.
T Consensus 289 ~l~~~~~-~~l~----------------------------------------------~l~~~--l~~~~~~~al~~~e~ 319 (398)
T PRK10747 289 GLKRQYD-ERLV----------------------------------------------LLIPR--LKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHhcCCC-HHHH----------------------------------------------HHHhh--ccCCChHHHHHHHHH
Confidence 9995443 2111 11111 233677777777777
Q ss_pred hhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 477 ELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 477 ~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.++ |.+...++.+|.++...++|++|..+|+++++..|++. .+..++.++...|+.++|..+|++++.+..+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 555 45556677899999999999999999999999999864 4668999999999999999999999998743
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=1.8e-18 Score=143.45 Aligned_cols=205 Identities=20% Similarity=0.220 Sum_probs=173.1
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 236 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 236 (552)
..+...||.-|+..|++..|...+++||+.+|+. ...|..++.+|..+|+. +.|.+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------------~~a~~~~A~~Yq~~Ge~-----------~~A~e~ 91 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------------YLAHLVRAHYYQKLGEN-----------DLADES 91 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------HHHHHHHHHHHHHcCCh-----------hhHHHH
Confidence 3577889999999999999999999999987643 34566777776666665 899999
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 237 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 237 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
|++++.++|++.+++++.|..++.+|++++|...|++|+.. .+..+..+-++|.|..+.|+++.|..+|+++++++|+
T Consensus 92 YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 92 YRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999874 3345678899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 008818 315 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 394 (552)
Q Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 394 (552)
.+.....++..++ ..|++..|..++++.....+-....+.....+-...|+-+.|-++=
T Consensus 172 ~~~~~l~~a~~~~---------------------~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 172 FPPALLELARLHY---------------------KAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred CChHHHHHHHHHH---------------------hcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999888888888 8889999999999888887777787777778888889988888888
Q ss_pred HHHHhhCCCCc
Q 008818 395 EKAAKLEPNCM 405 (552)
Q Consensus 395 ~~al~~~p~~~ 405 (552)
.+.....|...
T Consensus 231 ~qL~r~fP~s~ 241 (250)
T COG3063 231 AQLQRLFPYSE 241 (250)
T ss_pred HHHHHhCCCcH
Confidence 88888888764
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-17 Score=149.82 Aligned_cols=290 Identities=12% Similarity=0.070 Sum_probs=157.4
Q ss_pred hCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHH
Q 008818 152 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 231 (552)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (552)
.-|+|...+..+|.+++..|++.+|+..|+++.-++|.. ......+ +.++ ...|+++
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~---------i~~MD~Y---a~LL-----------~~eg~~e 283 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN---------VEAMDLY---AVLL-----------GQEGGCE 283 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh---------hhhHHHH---HHHH-----------HhccCHh
Confidence 445555555555555555555555555555555553322 1111111 1111 1223334
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
+-.......+..+.....-|+--+...+...++..|+.+-.++|..+|.+..++...|.++..+|+.++|+-.|+.+..+
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 44444444444443344444444444444455555555555555555555555555555555555555555555555554
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH-HHHH-HcCChHH
Q 008818 312 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA-NAYY-LTGDHRS 389 (552)
Q Consensus 312 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~~~~~~ 389 (552)
.|...+.|..+...|+ ..|++.+|.-..+.+++.-|.++..+..+| .++. .-.--++
T Consensus 364 ap~rL~~Y~GL~hsYL---------------------A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYL---------------------AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred chhhHHHHHHHHHHHH---------------------hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHH
Confidence 4444444444444444 444455555444444444444444444443 2221 1222344
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHH
Q 008818 390 SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAA 469 (552)
Q Consensus 390 A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (552)
|.+.+++++.+.|+ ...+-..++.++...|.+..
T Consensus 423 AKkf~ek~L~~~P~----------------------------------------------Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 423 AKKFAEKSLKINPI----------------------------------------------YTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HHHHHHhhhccCCc----------------------------------------------cHHHHHHHHHHHHhhCccch
Confidence 44455555544444 33455566677777788888
Q ss_pred HHHHHHhhhcchhh-hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 008818 470 AFETEENELSKMEE-CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 531 (552)
Q Consensus 470 A~~~~~~~l~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 531 (552)
++..+++.+...+. ..+..||.++...+.+.+|..+|..|+.++|++..+...+-.+-....
T Consensus 457 ~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 457 IIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 88888887765544 455688899999999999999999999999998888777766554433
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=4.7e-18 Score=154.35 Aligned_cols=204 Identities=19% Similarity=0.206 Sum_probs=176.8
Q ss_pred CChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHH
Q 008818 155 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 234 (552)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 234 (552)
..+.++..+|.++...|++++|+..++++++..|.. ...+..++.+ +...|++++|+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~-----------~~~~~~~~~A~ 85 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD------------YLAYLALALY-----------YQQLGELEKAE 85 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------HHHHHHHHHH-----------HHHcCCHHHHH
Confidence 346789999999999999999999999999886542 1233344444 34556679999
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 312 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (552)
..++++++..|.+..++..+|.++...|++++|+..|++++... +.....+..+|.++...|++++|+..|.+++..+
T Consensus 86 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 86 DSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999853 4567789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 008818 313 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 392 (552)
Q Consensus 313 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 392 (552)
|++...+..++.++. ..|++++|+..+++++...|.++..+..++.++...|+.++|..
T Consensus 166 ~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 166 PQRPESLLELAELYY---------------------LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred cCChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 999988888888887 89999999999999999988888999999999999999999999
Q ss_pred HHHHHHhhCC
Q 008818 393 CLEKAAKLEP 402 (552)
Q Consensus 393 ~~~~al~~~p 402 (552)
+.+.+....|
T Consensus 225 ~~~~~~~~~~ 234 (234)
T TIGR02521 225 YGAQLQKLFP 234 (234)
T ss_pred HHHHHHhhCc
Confidence 9888776544
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=4e-19 Score=154.14 Aligned_cols=160 Identities=15% Similarity=0.206 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
++|+++|+.+++.+|.+.++...+|.-|+-.++.+-|+.+|++.+.+.-.+++.+.++|.|++..++++-++..|++++.
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred hCCC---CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 008818 311 KDQN---HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 387 (552)
Q Consensus 311 ~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 387 (552)
...+ -.+.|+++|.+.. ..|++..|..+|+-++..++++.+++.+||.+-.+.|+.
T Consensus 387 tat~~~~aaDvWYNlg~vaV---------------------~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAV---------------------TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred hccCcchhhhhhhccceeEE---------------------eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 3221 1233444444444 778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHH
Q 008818 388 RSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 388 ~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
++|..++..+-...|+-.+..+++
T Consensus 446 ~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHHHHHHHHhhhhCccccccccce
Confidence 888888888888888766655554
No 62
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.81 E-value=5.6e-18 Score=166.99 Aligned_cols=365 Identities=16% Similarity=0.119 Sum_probs=272.2
Q ss_pred hHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccc
Q 008818 135 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 214 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (552)
..+....+..+|-++++++|..+.+|..||.+|....+...|..+|++|.++++.+.. ...+.+..
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdae------------aaaa~adt-- 535 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAE------------AAAASADT-- 535 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh------------hHHHHHHH--
Confidence 3455777888899999999999999999999999999999999999999999754311 11122222
Q ss_pred ccCCCccccccCchhHHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 215 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
+.+..+++.|......+-+..|-. ...|..+|..|...+++.+|+..|+.++..+|.+..+|..+|.+|
T Consensus 536 ---------yae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY 606 (1238)
T KOG1127|consen 536 ---------YAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAY 606 (1238)
T ss_pred ---------hhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 456677799999988887777754 346777999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC---
Q 008818 293 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--- 369 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 369 (552)
...|++..|++.|.++..++|.+.-..+..+.+.. ..|+|.+|+..+...+.....
T Consensus 607 ~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec---------------------d~GkYkeald~l~~ii~~~s~e~~ 665 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC---------------------DNGKYKEALDALGLIIYAFSLERT 665 (1238)
T ss_pred HhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888777766 899999999999988876544
Q ss_pred ----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------C-CCCcchHHHHHHHH--HHhHh---------------
Q 008818 370 ----AAHIWANLANAYYLTGDHRSSGKCLEKAAKL-------E-PNCMSTRYAVAVSR--IKDAE--------------- 420 (552)
Q Consensus 370 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~-p~~~~~~~~la~~~--l~~~~--------------- 420 (552)
.+..+..++..+...|=+.+|...+++.++. . -++...|..++... +....
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q 745 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQ 745 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3455556666666667777777777776653 2 12222222111100 00000
Q ss_pred --h--ccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhc--------hhhHHHHHHHHHhhhc--chhhhhh
Q 008818 421 --R--SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT--------HHEVAAAFETEENELS--KMEECAG 486 (552)
Q Consensus 421 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~~l~--~~~~~~~ 486 (552)
. .....+-+..+.......+.. ...+..|+++|..|.. +.+...|+.++.+++. ..+...|
T Consensus 746 ~e~~~~l~~~d~l~Lg~~c~~~hlsl-----~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~W 820 (1238)
T KOG1127|consen 746 LEKTGALKKNDLLFLGYECGIAHLSL-----AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLW 820 (1238)
T ss_pred HHhcccCcchhHHHHHHHHhhHHHHH-----hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHH
Confidence 0 000000000011111111111 1235679999988865 2234578888888655 5566778
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 487 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
..||.+ ...|++.-|..+|-+.+..+|.+...|.++|.++....+++.|...|.++..+.|.
T Consensus 821 naLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 821 NALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred HHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 899888 66799999999999999999999999999999999999999999999999888764
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.7e-18 Score=150.91 Aligned_cols=279 Identities=15% Similarity=0.119 Sum_probs=223.3
Q ss_pred hhhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008818 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 170 (552)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~ 170 (552)
..++..+++.-++-.++ ..|..||+.+|++...|..++.. ...-+.++.+.-..++.++.+|.....+...+.++...
T Consensus 53 k~~gn~~yk~k~Y~nal-~~yt~Ai~~~pd~a~yy~nRAa~-~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNAL-KNYTFAIDMCPDNASYYSNRAAT-LMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHH-HHHHHHHHhCccchhhhchhHHH-HHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 34666677777777776 89999999999999999888888 78888888888888888889999999999999999999
Q ss_pred CCchHHHHHHHHHH-----HHHhhc-cccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcC
Q 008818 171 GQPLKAVSSYEKAE-----EILLRC-EADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 244 (552)
Q Consensus 171 g~~~~A~~~~~~al-----~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~ 244 (552)
++..+|...|+..- ...|.- ...+....-.....+....+.+ +.-.|++++|+..--..++++
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~c-----------l~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAEC-----------LAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhh-----------hhhcccchhHHHHHHHHHhcc
Confidence 99888887776221 111100 0000000001111111122222 234567799999999999999
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------------DCIGNLGIAYFQSGDMEQSAKCFQDLILKD 312 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (552)
+.+.++++..|.+++-.++.+.|+..|++++.++|+.. ..+...|.-.++.|++..|.++|..+|.++
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999863 356777889999999999999999999999
Q ss_pred CCCHHH----HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 008818 313 QNHPAA----LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 388 (552)
Q Consensus 313 p~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 388 (552)
|++... +.+++.+.. ++|+..+|+..++.++++++....++...|.|+..+++|+
T Consensus 280 P~n~~~naklY~nra~v~~---------------------rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNI---------------------RLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred ccccchhHHHHHHhHhhhc---------------------ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 987543 444444444 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 008818 389 SSGKCLEKAAKLEPN 403 (552)
Q Consensus 389 ~A~~~~~~al~~~p~ 403 (552)
+|++.|+++++...+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999998776
No 64
>PLN03077 Protein ECB2; Provisional
Probab=99.80 E-value=2.4e-16 Score=169.57 Aligned_cols=369 Identities=11% Similarity=0.056 Sum_probs=255.8
Q ss_pred hHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccc
Q 008818 135 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 214 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (552)
..+.++.|.+.|++. ...+...|..+...|.+.|++++|+..|+++.+... .|+......+...
T Consensus 335 k~g~~~~A~~vf~~m---~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-------~Pd~~t~~~ll~a------ 398 (857)
T PLN03077 335 SLGSWGEAEKVFSRM---ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-------SPDEITIASVLSA------ 398 (857)
T ss_pred hcCCHHHHHHHHhhC---CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------CCCceeHHHHHHH------
Confidence 445666666666653 234556777777777777777777777777665421 1222211111111
Q ss_pred ccCCCccccccCchhHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008818 215 SSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 293 (552)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 293 (552)
+...|++++|.+.+..+++... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.
T Consensus 399 ---------~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~ 466 (857)
T PLN03077 399 ---------CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLR 466 (857)
T ss_pred ---------HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence 2245677889998888887643 3466788899999999999999999998654 35678999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc--------------ccccccccccccchhHHHhcCHHHHHHH
Q 008818 294 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG--------------SVLAGAGANTGEGACLDQASAVNVAKEC 359 (552)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 359 (552)
..|++++|+..|++.+...+.+...+..+...+..... ....+......+-..|.+.|++++|...
T Consensus 467 ~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 467 LNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred HCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 99999999999999986433333333333222211100 0011222333456788899999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHH
Q 008818 360 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 437 (552)
Q Consensus 360 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~ 437 (552)
|+.. +.+...|..+...|...|+.++|+..|++..+. .|+.......+ ...... ..+..+...+.
T Consensus 547 f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll--~a~~~~-------g~v~ea~~~f~ 613 (857)
T PLN03077 547 FNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL--CACSRS-------GMVTQGLEYFH 613 (857)
T ss_pred HHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH--HHHhhc-------ChHHHHHHHHH
Confidence 9886 456889999999999999999999999998874 56544322222 111111 11122222222
Q ss_pred HHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Q 008818 438 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 517 (552)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (552)
... ....+.|+ ...|..+...+.+.|++++|.+.+++.--..+...|..+-..+...++.+.+....+++++++|++.
T Consensus 614 ~M~-~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 614 SME-EKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHH-HHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 222 12223333 4689999999999999999999998853333455677666677888999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 518 HIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 518 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
..+..++.+|...|++++|.+..+...+.
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999998877653
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.3e-16 Score=139.65 Aligned_cols=286 Identities=14% Similarity=0.087 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
.-+..++-.-...-|++...+..+|.+++..|++++|+..|+++..++|.+....-..|.++...|++++-.......+.
T Consensus 215 a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~ 294 (564)
T KOG1174|consen 215 ASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA 294 (564)
T ss_pred hhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh
Confidence 33444555556667888888888888888888888888888888888888888888888888888888888777777777
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 390 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 390 (552)
+......-|+--+..++ ..++++.|+.+-+++|+.+|.+..++...|.++...|+.++|
T Consensus 295 ~~~~ta~~wfV~~~~l~---------------------~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 295 KVKYTASHWFVHAQLLY---------------------DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred hhhcchhhhhhhhhhhh---------------------hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHH
Confidence 77666666766666666 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHH-HH-HhchhhHH
Q 008818 391 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA-AV-QKTHHEVA 468 (552)
Q Consensus 391 ~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 468 (552)
+-.|+.+..+.|.....+.++...++.... ..++.-...+.++. .+.++.++..+| .+ .....--+
T Consensus 354 ~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~-~kEA~~~An~~~~~-----------~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYRLEIYRGLFHSYLAQKR-FKEANALANWTIRL-----------FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhhch-HHHHHHHHHHHHHH-----------hhcchhhhhhhcceeeccCchhHH
Confidence 999999999999888888777665553211 11111111111111 122334444454 22 23334557
Q ss_pred HHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 469 AAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 469 ~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
+|.+.+.+.+. |....+...+|..+...|.+++++..+++.+...|+ ...+..||.++...+.+++|+++|..|+.+
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88888888776 455577889999999999999999999999999986 468999999999999999999999999998
Q ss_pred hccc
Q 008818 547 YCSS 550 (552)
Q Consensus 547 ~~~~ 550 (552)
-|++
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 8764
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.79 E-value=1.8e-16 Score=153.57 Aligned_cols=316 Identities=13% Similarity=0.073 Sum_probs=218.7
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
+|+.+.+|..+|.++...|+.+.+...+.++.+..|.... ........+.+ +...|++++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~e~~~~~a~~-----------~~~~g~~~~ 61 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT---------ERERAHVEALS-----------AWIAGDLPK 61 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC---------HHHHHHHHHHH-----------HHHcCCHHH
Confidence 7999999999999999999999999999999988654311 11112222333 345677799
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKSGR----LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
|+..++++++.+|++..++.. +..+...|+ ...+.+.+......+|....++..+|.++...|++++|+..++++
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999887775 555555544 444444444444567777888889999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHc
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA----AHIWANLANAYYLT 384 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 384 (552)
++++|++..++..++.++. ..|++++|+.++++++...|.. ...+..+|.++...
T Consensus 141 l~~~p~~~~~~~~la~i~~---------------------~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLE---------------------MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HhhCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 9999999999999999888 8999999999999999987643 24567899999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHH--HH-HHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHH
Q 008818 385 GDHRSSGKCLEKAAKLEPNCMSTRY--AV-AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 461 (552)
Q Consensus 385 ~~~~~A~~~~~~al~~~p~~~~~~~--~l-a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
|++++|+..|++++...|....... .. ............... .-|-.+.
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-------------------------~~w~~~~--- 251 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG-------------------------DRWEDLA--- 251 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH-------------------------HHHHHHH---
Confidence 9999999999999876663211111 11 111110000000000 0110000
Q ss_pred hchhhHHHHHHHHHhhhc-chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcC
Q 008818 462 KTHHEVAAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTG 531 (552)
Q Consensus 462 ~~~~~~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g 531 (552)
........ ..........+.++...|+.++|...++........ ...+....+.++...|
T Consensus 252 ----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 252 ----------DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ----------HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 00000000 000011123445677777778787777766553221 3456678889999999
Q ss_pred ChhHHHHHHHHHHHHhc
Q 008818 532 DHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 532 ~~~~A~~~~~~al~l~~ 548 (552)
++++|+..+..++.+..
T Consensus 322 ~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 322 NYATALELLGPVRDDLA 338 (355)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998763
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=2.8e-16 Score=153.57 Aligned_cols=270 Identities=11% Similarity=0.039 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLC 328 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~ 328 (552)
.....|.+....|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. ......+.++.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL- 164 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-
Confidence 3456788889999999999999999999998888888999999999999999999999999888875 45555677776
Q ss_pred hhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 329 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
..|+++.|...+++.++..|+++.++..++.++...|++++|...+.+..+....++...
T Consensus 165 --------------------~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~ 224 (409)
T TIGR00540 165 --------------------AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEF 224 (409)
T ss_pred --------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 899999999999999999999999999999999999999999999999998755443322
Q ss_pred HHH----HHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhh
Q 008818 409 YAV----AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 484 (552)
Q Consensus 409 ~~l----a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 484 (552)
..+ ....+..... .. ....+...........++++.++..++..+...|++++|+..+.+.++..+..
T Consensus 225 ~~l~~~a~~~~l~~~~~-~~-------~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 225 ADLEQKAEIGLLDEAMA-DE-------GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHHHHHHHHHHHH-hc-------CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 111 1111211111 11 11122223333332334578999999999999999999999999988855443
Q ss_pred hh----hhHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCChhHHHHHHH--HHHHHhc
Q 008818 485 AG----AGESAFLDQASAVNVAKECLLAALKADPKAA--HIWANLANAYYLTGDHRSSGKCLE--KVLMVYC 548 (552)
Q Consensus 485 ~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~l~~ 548 (552)
.. ..........++.+.++..++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 31 2233334456788999999999999999999 899999999999999999999999 5666554
No 68
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=4.2e-17 Score=150.67 Aligned_cols=210 Identities=17% Similarity=0.145 Sum_probs=176.0
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccc
Q 008818 137 EKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 215 (552)
Q Consensus 137 ~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (552)
+..+.|...+.++++.+|.+..+|..+|.++..+| ++++++..+.++++.+|++ ..+++..+.++..
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------------yqaW~~R~~~l~~ 118 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN------------YQIWHHRRWLAEK 118 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------------hHHhHHHHHHHHH
Confidence 34567778888899999999999999999999999 6899999999999997654 2334444444444
Q ss_pred cCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 008818 216 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 295 (552)
Q Consensus 216 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 295 (552)
+|.. .+++++.++.++++.+|++..+|..++.++...|++++|++++.++|+.+|.+..+|..++.+....
T Consensus 119 l~~~---------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 119 LGPD---------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred cCch---------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 4331 2367899999999999999999999999999999999999999999999999999999999998876
Q ss_pred ---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC
Q 008818 296 ---GDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 368 (552)
Q Consensus 296 ---g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 368 (552)
|.+ ++++.+..+++..+|++..+|..++.++..... ..++..+|+..+.++++..|
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-----------------~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-----------------ALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-----------------ccccchhHHHHHHHhhcccC
Confidence 333 578889999999999999999999998872100 13566779999999999999
Q ss_pred CcHHHHHHHHHHHHHc
Q 008818 369 KAAHIWANLANAYYLT 384 (552)
Q Consensus 369 ~~~~~~~~la~~~~~~ 384 (552)
.++.++..|+.+|...
T Consensus 253 ~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 253 NHVFALSDLLDLLCEG 268 (320)
T ss_pred CcHHHHHHHHHHHHhh
Confidence 9999999999999863
No 69
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.78 E-value=4.6e-15 Score=157.63 Aligned_cols=351 Identities=12% Similarity=0.043 Sum_probs=256.3
Q ss_pred HHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccc
Q 008818 136 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 215 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (552)
.+.+..|...+..... .+...|..+-..+.+.|++++|...|+++.+... .|+... +..+...
T Consensus 419 ~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl-------~pD~~t----ynsLI~~--- 481 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL-------KADCKL----YTTLIST--- 481 (1060)
T ss_pred CCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-------CCCHHH----HHHHHHH---
Confidence 3455666666554322 3567888888888999999999999998877532 222211 1122222
Q ss_pred cCCCccccccCchhHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 008818 216 SGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAY 292 (552)
Q Consensus 216 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 292 (552)
+.+.|++++|...|+++.+... .+...|..+...|.+.|++++|+..|.++... .| +...|..+...|
T Consensus 482 --------y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~ 552 (1060)
T PLN03218 482 --------CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISAC 552 (1060)
T ss_pred --------HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 2345677999999999987643 25788999999999999999999999988665 34 477899999999
Q ss_pred HHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC-
Q 008818 293 FQSGDMEQSAKCFQDLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD- 367 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~- 367 (552)
.+.|++++|.+.|.++... .|+ ...+..+...+. +.|++++|.+.|+...+.+
T Consensus 553 ~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~---------------------k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 553 GQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA---------------------NAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998753 343 455666666655 8999999999999999876
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCC
Q 008818 368 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 445 (552)
Q Consensus 368 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (552)
+.+...|..+...|.+.|++++|+..|++..+. .|+. ..+..+.. .+... ..+..+...+........
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~TynsLI~-a~~k~-------G~~eeA~~l~~eM~k~G~- 680 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFFSALVD-VAGHA-------GDLDKAFEILQDARKQGI- 680 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH-HHHhC-------CCHHHHHHHHHHHHHcCC-
Confidence 446889999999999999999999999998876 4442 22222211 11111 112222222333333222
Q ss_pred CCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc---chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHH
Q 008818 446 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIW 520 (552)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 520 (552)
..+...|..+...|.+.|++++|+..|..... ..+...|..+...|.+.|++++|++.|++.... .| +...|
T Consensus 681 --~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty 757 (1060)
T PLN03218 681 --KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITY 757 (1060)
T ss_pred --CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHH
Confidence 23457899999999999999999999987543 233466888999999999999999999988764 45 46677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 521 ANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 521 ~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
..+-..+.+.|++++|..+|+++++.-
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 888899999999999999999987653
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.77 E-value=1.8e-16 Score=152.70 Aligned_cols=246 Identities=17% Similarity=0.174 Sum_probs=201.3
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 312 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 312 (552)
.+|.-..+...++..|..+|+|++|+..|+.++.. .|.-......+|.+|..++++.+|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46777778888999999999999999999999998 55556666779999999999999999999999762
Q ss_pred ------CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC--------CCcHHHHHHHH
Q 008818 313 ------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 378 (552)
Q Consensus 313 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la 378 (552)
|.-..++.+|+.+|. ..|++++|..++++++++. |+-...+.+++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~---------------------~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYY---------------------KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHh---------------------ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 333445777777776 9999999999999998863 33556788999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHH
Q 008818 379 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 458 (552)
Q Consensus 379 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (552)
.++..++++++|..++++++++.-+-+ ...++..+..+.++|
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~--------------------------------------g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAP--------------------------------------GEDNVNLAKIYANLA 374 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhc--------------------------------------cccchHHHHHHHHHH
Confidence 999999999999999999987643211 011122346789999
Q ss_pred HHHhchhhHHHHHHHHHhhhcch----------hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHh-------CCCcHHHHH
Q 008818 459 AVQKTHHEVAAAFETEENELSKM----------EECAGAGESAFLDQASAVNVAKECLLAALKA-------DPKAAHIWA 521 (552)
Q Consensus 459 ~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~ 521 (552)
.+|..+|++.+|.+.+++++... ...+.+.+|..+.+.+++.+|...|..++.+ .|+-...+.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 99999999999999999976532 1245778999999999999999999988875 344567889
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 522 NLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 522 ~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
+||.+|..+|+++.|+++-++++..-
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988543
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.2e-15 Score=131.18 Aligned_cols=202 Identities=17% Similarity=0.178 Sum_probs=106.7
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
....+.-+.|...|..+++.+|...+++..||+.|.+.|..+.|+..-+..++. | ++...
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-p---------dlT~~---------- 104 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-P---------DLTFE---------- 104 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-C---------CCchH----------
Confidence 444555666667777777788888888888888888888888888776665542 2 21100
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
....+...||.-|+..|-++.|...|...+....--..++..|..+|
T Consensus 105 ---------------------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY 151 (389)
T COG2956 105 ---------------------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY 151 (389)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 11224444555555555555555555554443333344555555555
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 293 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
....+|++|++.-++..++.+..... .++..|- .++..+....+.+.|+..+.++++.+|.++.
T Consensus 152 Q~treW~KAId~A~~L~k~~~q~~~~--eIAqfyC--------------ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR 215 (389)
T COG2956 152 QATREWEKAIDVAERLVKLGGQTYRV--EIAQFYC--------------ELAQQALASSDVDRARELLKKALQADKKCVR 215 (389)
T ss_pred HHhhHHHHHHHHHHHHHHcCCccchh--HHHHHHH--------------HHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence 55555555555555555544433211 1111111 0111222444555555555555555555555
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 373 IWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 373 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
+-..+|.++...|+|+.|++.++.+++.+|+
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 5555555555555555555555555555554
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=2.5e-15 Score=146.00 Aligned_cols=269 Identities=13% Similarity=0.059 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL-GIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-INYAALLL 327 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~ 327 (552)
..+..|.+....|+|++|.+...++-+..+ ++..++.+ +.+....|+++.|..+|.++.+..|++..+. ...+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345667777889999999988887666533 35555555 5666999999999999999999999886443 23355555
Q ss_pred HhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 008818 328 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
..|++++|+..+++..+.+|+++.++..++.+|...|++++|+..+.+..+..+.++..
T Consensus 165 ---------------------~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 ---------------------ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred ---------------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 89999999999999999999999999999999999999999999999999877665433
Q ss_pred HHH---HHHHH-HHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhh
Q 008818 408 RYA---VAVSR-IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 483 (552)
Q Consensus 408 ~~~---la~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 483 (552)
... .+... +...... .. .+.+...........+.++.++..++..+...|+.++|.....+.++....
T Consensus 224 ~~~l~~~a~~~l~~~~~~~-~~-------~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~ 295 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMAD-QG-------SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHh-cC-------HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 221 11111 1111111 11 122223333333334678899999999999999999999999998873322
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 484 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
. ...+.......++.++++..+++.++.+|+++..+..+|.++...|++++|.++|++++++-|+
T Consensus 296 ~-~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 296 E-RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred H-HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2 1111123335599999999999999999999999999999999999999999999999998665
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=4.9e-16 Score=149.72 Aligned_cols=252 Identities=20% Similarity=0.222 Sum_probs=185.7
Q ss_pred hCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHH
Q 008818 152 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 231 (552)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (552)
.+|.-..+...+|..|...|+|++|+..++++++..-+ ..+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k------------------~~G--------------------- 234 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEK------------------TSG--------------------- 234 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------------------ccC---------------------
Confidence 45777778888999999999999999999999986210 000
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
...|.-......+|.+|..++++.+|+..|++|+.+ +|....++.+||.+|...|++++|..
T Consensus 235 ----------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~ 304 (508)
T KOG1840|consen 235 ----------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEE 304 (508)
T ss_pred ----------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHH
Confidence 112333344447999999999999999999999987 44456789999999999999999999
Q ss_pred HHHHHHhhCC-----CCHHH---HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC--------
Q 008818 304 CFQDLILKDQ-----NHPAA---LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-------- 367 (552)
Q Consensus 304 ~~~~al~~~p-----~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------- 367 (552)
++++++++.. ..+.. +..++ .++...+++++|+.++++++++.
T Consensus 305 ~~e~Al~I~~~~~~~~~~~v~~~l~~~~---------------------~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 305 YCERALEIYEKLLGASHPEVAAQLSELA---------------------AILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHH---------------------HHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 9999997642 22222 33333 34458999999999999998863
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCC
Q 008818 368 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 447 (552)
Q Consensus 368 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (552)
+.-+..+.++|.+|+.+|+|++|.+.|++++.+....... ..
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--------------------------------------~~ 405 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--------------------------------------KD 405 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--------------------------------------cC
Confidence 2346789999999999999999999999999875432110 00
Q ss_pred CCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc------chhh---hhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 008818 448 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS------KMEE---CAGAGESAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (552)
......+..+|..+.+.+.+.+|...|....+ +..+ ..+.+||.+|..+|++++|+++.++++.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11123455566666666666666666555333 3222 4466999999999999999999999884
No 74
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.75 E-value=3.7e-14 Score=150.79 Aligned_cols=350 Identities=12% Similarity=0.099 Sum_probs=251.8
Q ss_pred HHhHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccc
Q 008818 136 EEKVSSLKTGLVHVARKMP--KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (552)
.+.+..|.+.|+...+.+. .+...+..+...+.+.|..++|+.+|+.... |+...+..+.. .
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----------pd~~Tyn~LL~----a- 446 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----------PTLSTFNMLMS----V- 446 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----------CCHHHHHHHHH----H-
Confidence 3566666666666554442 2233344455566667777777776665432 12111111111 1
Q ss_pred cccCCCccccccCchhHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIA 291 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 291 (552)
+...|++++|...|+++.+... .+...|..+...|.+.|++++|.+.|+++.+... -+...|..+...
T Consensus 447 ----------~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 447 ----------CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred ----------HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2345777999999999887653 3467888999999999999999999999987643 268889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc---
Q 008818 292 YFQSGDMEQSAKCFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--- 366 (552)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 366 (552)
|.+.|++++|+..|++..... | +...|..+...+. +.|++++|.+.|.+....
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~---------------------k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACG---------------------QSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999987643 4 3556777777666 899999999999999763
Q ss_pred -CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCC
Q 008818 367 -DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN-CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 444 (552)
Q Consensus 367 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (552)
.|+ ...|..+..+|.+.|++++|.+.|+++.+.+.. +...+..+.. .+.... .+..+..-+......+
T Consensus 575 i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~-ay~k~G-------~~deAl~lf~eM~~~G- 644 (1060)
T PLN03218 575 IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN-SCSQKG-------DWDFALSIYDDMKKKG- 644 (1060)
T ss_pred CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH-HHHhcC-------CHHHHHHHHHHHHHcC-
Confidence 454 678889999999999999999999999987633 2333333222 222211 1222333333333332
Q ss_pred CCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc---hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHH
Q 008818 445 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK---MEECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHI 519 (552)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 519 (552)
+.| +...|..+...+.+.|++++|+..+...... .+...+..+...|.+.|++++|+..|++..+. .| +...
T Consensus 645 -v~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvt 721 (1060)
T PLN03218 645 -VKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVST 721 (1060)
T ss_pred -CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHH
Confidence 223 3568899999999999999999999986652 34456778899999999999999999998764 45 5788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 520 WANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 520 ~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
|..+...|.+.|++++|.++|+++.+.
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999987653
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.2e-14 Score=129.26 Aligned_cols=392 Identities=14% Similarity=0.086 Sum_probs=265.4
Q ss_pred hhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Q 008818 109 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 188 (552)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (552)
..|++||+.+-.+...|..-+.. -...+.+..|+..+.+++..-|.....|+....+-..+|+...|.+.|++-++..|
T Consensus 94 Sv~ERALdvd~r~itLWlkYae~-Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P 172 (677)
T KOG1915|consen 94 SVFERALDVDYRNITLWLKYAEF-EMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP 172 (677)
T ss_pred HHHHHHHhcccccchHHHHHHHH-HHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC
Confidence 55666666666666666554444 55566666677777777777776666676666666667777777777777666644
Q ss_pred hccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHH
Q 008818 189 RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI 268 (552)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 268 (552)
+... +...+.. .+.....+.|...|++.+-.+|+ ...|...+..-.+.|+..-|.
T Consensus 173 ~eqa------W~sfI~f------------------ElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 173 DEQA------WLSFIKF------------------ELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred cHHH------HHHHHHH------------------HHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHH
Confidence 3211 1111100 22345557777777777777765 566777777777778888888
Q ss_pred HHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccch
Q 008818 269 SVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 345 (552)
Q Consensus 269 ~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (552)
..|.+|++.-.++ ...+...|..-..+..++.|...|+-++..-|.+..--...+.+.+.+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK---------------- 291 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK---------------- 291 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----------------
Confidence 8888777764433 223444455555667777788888888877776633222222222221
Q ss_pred hHHHhcC---HHHHH-----HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH--HHHHHH
Q 008818 346 CLDQASA---VNVAK-----ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY--AVAVSR 415 (552)
Q Consensus 346 ~~~~~~~---~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~la~~~ 415 (552)
+-|+ .++++ --|++.++.+|.+-++|+..-.+-...|+.+.-.+.|++|+...|-...-.+ ......
T Consensus 292 ---qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 292 ---QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred ---HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 2233 23333 2467788899999999999999999999999999999999998776433222 111111
Q ss_pred HHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhh-hHHHHHH
Q 008818 416 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGA-GESAFLD 494 (552)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~la~~~~ 494 (552)
+.-+....-..+......+.....+..........+.+|...+.....+.+...|...+..++...+..-.+ +.-..-.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 211111111122333444445555565555566778899999999999999999999999998877765544 4555677
Q ss_pred hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008818 495 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 545 (552)
++++++.+...|++-|+..|.+..+|...|.+-..+|+.+.|...|+-|+.
T Consensus 449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999998874
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=4.6e-15 Score=129.14 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=158.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccc
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 333 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 333 (552)
.|.-+.-..+.++|+..|..+++.+|...+++..||.+|...|+.+.|+...+..+. .|+.+.....++...
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~q------- 112 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQ------- 112 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHH-------
Confidence 455555667777788888877777777777788888888888888888777665543 455444333322222
Q ss_pred ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
+|.-|...|-++.|...|....+...--..+...|..+|....+|++|++.-++...+.++.....
T Consensus 113 ---------L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----- 178 (389)
T COG2956 113 ---------LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----- 178 (389)
T ss_pred ---------HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-----
Confidence 244455777778888877777765544566777777778778888888887777777776643211
Q ss_pred HHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc--hhhhhhhhHHH
Q 008818 414 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--MEECAGAGESA 491 (552)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~la~ 491 (552)
.+..|..++..+....+.+.|+..+.+++.. ....+-..+|.
T Consensus 179 ------------------------------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 179 ------------------------------------IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred ------------------------------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 1234566666666666777777777765553 33355566777
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 492 FLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
+....|+|+.|++.++.+++.+|+. +.+...|..||..+|+.++.+..+.++++...
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 7777777777777777777777764 56666777777777777777777777766554
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.73 E-value=1.9e-14 Score=139.38 Aligned_cols=376 Identities=15% Similarity=0.069 Sum_probs=272.3
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
...-|.++.+.+.|++++...-...+.|+.++..|...|.-..|+...+..+...|.+. ++...- ..-..+
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps----~~s~~L-----masklc 403 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS----DISVLL-----MASKLC 403 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC----cchHHH-----HHHHHH
Confidence 44556777777777777666666777777777777777777777777777776642110 111110 011111
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCc-----chHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHh
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDT-----RQAVVWNTLGLILLKS-----------GRLQSSISVLSSLLA 276 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~ 276 (552)
.-..+.+++++.+..+++.... -.+..+..+|.+|..+ ....++++.++++++
T Consensus 404 -----------~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 404 -----------IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred -----------HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 1244666999999999997432 1256788888887654 245789999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHH
Q 008818 277 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 355 (552)
Q Consensus 277 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (552)
.+|.|+.+.+.++.-|..+++.+.|+...++++++ ..++..+|..++.++. ..+++.+
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS---------------------a~kr~~~ 531 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS---------------------AQKRLKE 531 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh---------------------hhhhhHH
Confidence 99999999999999999999999999999999999 5567888999998887 8899999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHh--------hccCchH
Q 008818 356 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE--------RSQEPTE 427 (552)
Q Consensus 356 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~--------~~~~~~~ 427 (552)
|+.+.+.++...|+|.........+-...++.++|+..+...+.+-.....+...+......+.. ...++..
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 99999999999999988888888888889999999999988887655433333222211111000 0001111
Q ss_pred HHhHHHHHHHH---HhhcC-----CCCCCC-------CHHHHHhHHHHHhchhhHHHHHHHHHh--hhcchhhhhhhhHH
Q 008818 428 QLSWAGNEMAS---ILREG-----DPVQIE-------PPIAWAGFAAVQKTHHEVAAAFETEEN--ELSKMEECAGAGES 490 (552)
Q Consensus 428 ~~~~~~~~~~~---~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~--~l~~~~~~~~~~la 490 (552)
....+...+.. .+... ..+.+. ....|...+..+...+..++|..++.+ .+.+.....|+..|
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G 691 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRG 691 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhh
Confidence 11111111110 00100 000111 135678888899999999999877777 44466667889999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHH--HHHHHHHHhcc
Q 008818 491 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK--CLEKVLMVYCS 549 (552)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~l~~~ 549 (552)
.++...|++.+|...|..++.++|+++.+...+|.++...|+..-|.. .+..++++-+.
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999988888 99999887654
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=8.7e-15 Score=138.88 Aligned_cols=265 Identities=15% Similarity=0.138 Sum_probs=215.6
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
++.++|...++..+..++..|++++.+...|..+..+|+-++|..+.+.++..++....+|..+|.++....+|++|+++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 36688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 008818 305 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 384 (552)
Q Consensus 305 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 384 (552)
|+.|+.++|+|...+..++.+.. ++++++.....-.+.++..|..-..|...+..+...
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~---------------------QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQI---------------------QMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHH---------------------HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999888 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhch
Q 008818 385 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 464 (552)
Q Consensus 385 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (552)
|++..|...++...+..-..+...-. ...........++...
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~--------------------------------------e~se~~Ly~n~i~~E~ 198 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDY--------------------------------------EHSELLLYQNQILIEA 198 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHH--------------------------------------HHHHHHHHHHHHHHHc
Confidence 99999999988877654222111100 0012334444556666
Q ss_pred hhHHHHHHHHHhhhcchhh--hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHH-HHHH
Q 008818 465 HEVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG-KCLE 541 (552)
Q Consensus 465 ~~~~~A~~~~~~~l~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~ 541 (552)
|.+++|++.....-...-. ......|..+.+.+++++|+..|...+..+|++...+..+-.++.+-.+--+++ ..|.
T Consensus 199 g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~ 278 (700)
T KOG1156|consen 199 GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYA 278 (700)
T ss_pred ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6677777766553222222 223366778999999999999999999999999999988888886333334444 5666
Q ss_pred HHHHHhc
Q 008818 542 KVLMVYC 548 (552)
Q Consensus 542 ~al~l~~ 548 (552)
..-+.++
T Consensus 279 ~ls~~y~ 285 (700)
T KOG1156|consen 279 ILSEKYP 285 (700)
T ss_pred HHhhcCc
Confidence 5555554
No 79
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=5.1e-16 Score=127.12 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008818 234 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 234 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 313 (552)
...|+++++.+|++ +..+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45788888888875 556888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 008818 314 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 384 (552)
Q Consensus 314 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 384 (552)
+++.+++++|.++. ..|++++|+..|.+++++.|+++..+..+|.+...+
T Consensus 90 ~~~~a~~~lg~~l~---------------------~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLK---------------------MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999998888888 888999999999999999999988888888776543
No 80
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.70 E-value=3e-13 Score=142.16 Aligned_cols=344 Identities=11% Similarity=0.031 Sum_probs=236.4
Q ss_pred hhHHhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcc
Q 008818 134 SREEKVSSLKTGLVHVARK--MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 211 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 211 (552)
...+.+..+.+.+....+. .| +..++..+..+|.+.|++++|...|++..+ | +.. .+..+..
T Consensus 134 ~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~---------~~~----t~n~li~ 197 (697)
T PLN03081 134 IALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R---------NLA----SWGTIIG 197 (697)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C---------Cee----eHHHHHH
Confidence 3345566666666665543 34 467778888888888888888888887642 1 110 1111111
Q ss_pred cccccCCCccccccCchhHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 008818 212 LPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLG 289 (552)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 289 (552)
. +.+.|++++|+..|+++++..+ .+...+..+...+...|....+.+.+..+++.. ..+..++..+.
T Consensus 198 ~-----------~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 198 G-----------LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred H-----------HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 1 2345666888888888876543 234566667777778888888888877776653 23566778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC-C
Q 008818 290 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-P 368 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p 368 (552)
..|.+.|++++|.+.|++.. +.+...|..+...+. +.|++++|+..|++..+.. .
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~---------------------~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYA---------------------LHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999988653 456677877777776 8899999999999887643 1
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCC
Q 008818 369 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 447 (552)
Q Consensus 369 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (552)
-+...+..+..++.+.|++++|...+..+++.. +.+...+..+.....+ .. .+..+. .++.....
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k-~G-------~~~~A~----~vf~~m~~-- 388 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK-WG-------RMEDAR----NVFDRMPR-- 388 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH-CC-------CHHHHH----HHHHhCCC--
Confidence 246788888899999999999999999988875 3333344333332221 11 112222 22222211
Q ss_pred CCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc---chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHH
Q 008818 448 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK--AAHIWAN 522 (552)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 522 (552)
.+...|..+...|.+.|+.++|+..+.+... ..+...+..+...+.+.|.+++|..+|+...+..+- +...|..
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 2456799999999999999999999988543 222344567777888999999999999998864322 3567888
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 008818 523 LANAYYLTGDHRSSGKCLEKV 543 (552)
Q Consensus 523 lg~~~~~~g~~~~A~~~~~~a 543 (552)
+..+|.+.|+.++|.+.++++
T Consensus 468 li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC
Confidence 999999999999999988764
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=6.6e-15 Score=133.27 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---H
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---A 318 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 318 (552)
+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34455666666666666666666666666666666554 45566666666666666666666666666665554 3
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 319 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
++.+|.++. .. ++.++...|++++|+..|++++
T Consensus 110 ~~~~g~~~~---------------------~~--------------------------~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 110 YYLRGLSNY---------------------NQ--------------------------IDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred HHHHHHHHH---------------------Hh--------------------------cccccCCHHHHHHHHHHHHHHH
Confidence 444444433 11 1112333478899999999999
Q ss_pred hhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhh
Q 008818 399 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 478 (552)
Q Consensus 399 ~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 478 (552)
..+|++...+..+... +.....
T Consensus 143 ~~~p~~~~~~~a~~~~-------------------------------------------~~~~~~--------------- 164 (235)
T TIGR03302 143 RRYPNSEYAPDAKKRM-------------------------------------------DYLRNR--------------- 164 (235)
T ss_pred HHCCCChhHHHHHHHH-------------------------------------------HHHHHH---------------
Confidence 9999876544222110 000000
Q ss_pred cchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 479 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 479 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.....+.+|.++...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|..+++.....++
T Consensus 165 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 ---LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 00112356678899999999999999999997764 68999999999999999999999988776554
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=4.7e-15 Score=134.24 Aligned_cols=193 Identities=16% Similarity=0.104 Sum_probs=140.2
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
++..+..++.+|..++..|++++|+..|++++...|++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------------------------------------ 66 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------------------------------------ 66 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------------------------------------
Confidence 45677889999999999999999999888888775432
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------CCHHHH
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYFQS--------GDMEQS 301 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------g~~~~A 301 (552)
|....+++.+|.++...|++++|+..|+++++..|+++. +++.+|.++... |++++|
T Consensus 67 ------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A 134 (235)
T TIGR03302 67 ------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREA 134 (235)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 112346677777777777777777777777777776554 577777777665 677777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC---cHHHHHHHH
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLA 378 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la 378 (552)
+..|++++..+|++..++..+..+...... .......+|.++...|++.+|+..|+++++..|+ .+.+++.+|
T Consensus 135 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 135 FEAFQELIRRYPNSEYAPDAKKRMDYLRNR----LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 777777777777776554333222110000 0011224566777999999999999999999776 468999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 379 NAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 379 ~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
.++..+|++++|..+++......|+
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999888776653
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=2.2e-15 Score=123.41 Aligned_cols=123 Identities=20% Similarity=0.152 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhH
Q 008818 268 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 347 (552)
Q Consensus 268 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (552)
...|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-------------------- 69 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-------------------- 69 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--------------------
Confidence 56799999999875 6678999999999999999999999999999999999999998
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 008818 348 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 414 (552)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 414 (552)
..|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+..++..
T Consensus 70 -~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 70 -MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred -HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888777654
No 84
>PLN03077 Protein ECB2; Provisional
Probab=99.66 E-value=3.8e-13 Score=145.00 Aligned_cols=373 Identities=11% Similarity=0.061 Sum_probs=231.6
Q ss_pred hHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccc
Q 008818 135 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 214 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (552)
..+.++.|.+.|.+. ...+...|..+...|.+.|++++|+..|.++..... .|+...+..+....+
T Consensus 234 k~g~~~~A~~lf~~m---~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-------~Pd~~ty~~ll~a~~---- 299 (857)
T PLN03077 234 KCGDVVSARLVFDRM---PRRDCISWNAMISGYFENGECLEGLELFFTMRELSV-------DPDLMTITSVISACE---- 299 (857)
T ss_pred cCCCHHHHHHHHhcC---CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------CCChhHHHHHHHHHH----
Confidence 345677777777653 234567888888999999999999999998876522 233322222222211
Q ss_pred ccCCCccccccCchhHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008818 215 SSGDNSLDKELEPEELEEILSKLKESMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 293 (552)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 293 (552)
..|+.+.|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++... .+...|..+...|.
T Consensus 300 -----------~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~ 365 (857)
T PLN03077 300 -----------LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE 365 (857)
T ss_pred -----------hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH
Confidence 2344577777776666532 23456777777778888888888888776532 34566777777888
Q ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhc--------------ccccccccccccchhHHHhcCHHHHH
Q 008818 294 QSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYG--------------SVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 294 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
+.|++++|+..|++..+. .|+.......+ ..+..... ........+..+...|.+.|++++|.
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVL-SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHH-HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888776543 34443221111 11110000 00011222333556677899999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHH-HHHHHhH---hhccC--------
Q 008818 358 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL-EPNCMSTRYAVA-VSRIKDA---ERSQE-------- 424 (552)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la-~~~l~~~---~~~~~-------- 424 (552)
+.|++..+ .+...|..+...|...|++++|+..|++.+.. .|+.......+. ...+... .....
T Consensus 445 ~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 445 EVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99987653 35678889999999999999999999998754 333322211111 1111000 00000
Q ss_pred --------chHHHhH--HHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc---hhhhhhhhHHH
Q 008818 425 --------PTEQLSW--AGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK---MEECAGAGESA 491 (552)
Q Consensus 425 --------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~la~ 491 (552)
....+.+ ..+.+...+... ..+...|..+...|...|+.++|+..+.+.... .+...+..+-.
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 0000000 011222223322 345678999999999999999999999875431 22334555666
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 008818 492 FLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKV 543 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 543 (552)
.+.+.|++++|..+|+...+..+- +...|..+..++.+.|++++|.+.+++.
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 788899999999999988854322 4578889999999999999999998864
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=7.6e-14 Score=123.01 Aligned_cols=314 Identities=13% Similarity=0.058 Sum_probs=212.5
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
.+...+|..|+..++-.+..+.+.. ..-..+|.|++++|+|++|+..|+-+...+.-+...+.+|+.+++.+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4577889999999998887665443 566678999999999999999999998877777899999999999999999998
Q ss_pred HHHHHHHhhCCCCHH---HHHHHHHHHHH------hhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 008818 303 KCFQDLILKDQNHPA---ALINYAALLLC------KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 373 (552)
Q Consensus 303 ~~~~~al~~~p~~~~---~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 373 (552)
..-.++ |+.+- .++.++.-+-. ............++++.+....-.|.+|++.|.+++..+|+....
T Consensus 112 ~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 112 SIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 776654 33322 22222211100 000111123445567777777888999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHH-------HHHHHH--------
Q 008818 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA-------GNEMAS-------- 438 (552)
Q Consensus 374 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~-------~~~~~~-------- 438 (552)
...++.||+++.-|+-+.+.+.--++..|+.+.+....+...++...... +.+..... ......
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~-ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRT-AEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccch-hHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 99999999999999999999999999999998877766554433211000 00000000 001111
Q ss_pred ------HhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhh--------------------------
Q 008818 439 ------ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG-------------------------- 486 (552)
Q Consensus 439 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-------------------------- 486 (552)
.++-.......-|++..++...|..+++..+|+...+. ++|..+.-+
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 11111111123466777788888888888888776543 222222222
Q ss_pred -----------------hhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 008818 487 -----------------AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 543 (552)
Q Consensus 487 -----------------~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 543 (552)
-.+|.+++-..+|++.+.++...-...-++....+++++++...|++.+|.+.|-+.
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 233344444455777777777766666777788888888888899998888877543
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=1.2e-14 Score=125.75 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccc
Q 008818 261 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGAN 340 (552)
Q Consensus 261 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 340 (552)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|++...+..+|.+++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~------------ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY------------ 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------
Confidence 67789999999999999999999999999999999999999999999999999999999999997531
Q ss_pred cccchhHHHhcC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 008818 341 TGEGACLDQASA--VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 341 ~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
..|+ +++|...++++++.+|+++.++..+|.++...|++++|+.+|+++++..|.+..-
T Consensus 120 --------~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 120 --------QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred --------hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 5566 5999999999999999999999999999999999999999999999999986643
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=2e-13 Score=132.27 Aligned_cols=293 Identities=11% Similarity=-0.016 Sum_probs=192.9
Q ss_pred hHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccc
Q 008818 138 KVSSLKTGLVHVARKMPKN---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 214 (552)
Q Consensus 138 ~~~~a~~~l~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (552)
....+.+.+.++.+..|.+ .+..+..|.+++..|++++|+..++++++..|++. .. +.. +..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~------~a------~~~-~~~~~ 87 (355)
T cd05804 21 ERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL------LA------LKL-HLGAF 87 (355)
T ss_pred CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------HH------HHH-hHHHH
Confidence 3444455555555555544 55788889999999999999999999999877542 11 110 11222
Q ss_pred ccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008818 215 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 294 (552)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 294 (552)
.+|.. .+....+...+......+|.....+..+|.++..+|++++|+..+++++++.|+++.++..+|.++..
T Consensus 88 ~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 88 GLGDF-------SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred Hhccc-------ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 22221 23335555555555567788888888999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-
Q 008818 295 SGDMEQSAKCFQDLILKDQNHPA----ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK- 369 (552)
Q Consensus 295 ~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 369 (552)
.|++++|+.++++++...|.++. .+..++.++. ..|++++|+..|++++...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~---------------------~~G~~~~A~~~~~~~~~~~~~~ 219 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL---------------------ERGDYEAALAIYDTHIAPSAES 219 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHhccccCC
Confidence 99999999999999998875432 2445666655 999999999999999876662
Q ss_pred -cHHHHH---HHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCC
Q 008818 370 -AAHIWA---NLANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 444 (552)
Q Consensus 370 -~~~~~~---~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (552)
...... .+...+...|....+..+ +.+.... +....
T Consensus 220 ~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~-------------------------------------- 260 (355)
T cd05804 220 DPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD-------------------------------------- 260 (355)
T ss_pred ChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--------------------------------------
Confidence 221111 122222333432222222 2221111 00000
Q ss_pred CCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcch-----------hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC
Q 008818 445 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-----------EECAGAGESAFLDQASAVNVAKECLLAALKAD 513 (552)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (552)
..........+.++...|+.++|...+....... ........|.++...|++++|+..+..++.+.
T Consensus 261 ---~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 261 ---HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred ---ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0001112245556666666766666655422211 12334567778889999999999999998764
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.64 E-value=2.6e-14 Score=123.56 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=118.0
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY-FQSGD--MEQSA 302 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~ 302 (552)
..++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3466799999999999999999999999999999999999999999999999999999999999975 67787 59999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 303 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
..++++++.+|++..++..+|..++ ..|++++|+.+++++++..|.+..
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~---------------------~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF---------------------MQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999999999999999998 999999999999999999887543
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.1e-12 Score=121.73 Aligned_cols=376 Identities=11% Similarity=0.068 Sum_probs=210.2
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
...++.++++.+...+++...|++..+.+..-.++++.++|++|+...++-.... ......+..+++
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-------------~~~~~~fEKAYc 88 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-------------VINSFFFEKAYC 88 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-------------hcchhhHHHHHH
Confidence 3556778888888888888888888888888888888888888885555432210 000111233333
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-------------- 278 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 278 (552)
. ++.+..++|+..++ ..++.+..+....|.+++++|+|++|+.+|+..++.+
T Consensus 89 ~-----------Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 89 E-----------YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred H-----------HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3 34455588888888 3455556677788888888888888888888875532
Q ss_pred ----------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhhccc
Q 008818 279 ----------------PN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--------QNHPAALINYAALLLCKYGSV 333 (552)
Q Consensus 279 ----------------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~ 333 (552)
|+ ..+.+++.+.++...|+|.+|++.+++++++. .+..+.-..+..+..
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv------ 228 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV------ 228 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH------
Confidence 22 35678999999999999999999999995432 121222223332222
Q ss_pred ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHcCChH-HHHHHHHHHHhhCCCCc---
Q 008818 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA----NLANAYYLTGDHR-SSGKCLEKAAKLEPNCM--- 405 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~-~A~~~~~~al~~~p~~~--- 405 (552)
.++.++...|+..+|...|...++.+|-+..... ++-.+-....-++ .++..++......++..
T Consensus 229 --------QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~ 300 (652)
T KOG2376|consen 229 --------QLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSK 300 (652)
T ss_pred --------HHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHH
Confidence 1345556999999999999999998876543221 1111100000001 11111111111111100
Q ss_pred -------chHHHHHHHHH--------HhHhhc--cC------------chHHHhHHHHHHHHHhhcCCCCCCCC-HHHHH
Q 008818 406 -------STRYAVAVSRI--------KDAERS--QE------------PTEQLSWAGNEMASILREGDPVQIEP-PIAWA 455 (552)
Q Consensus 406 -------~~~~~la~~~l--------~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 455 (552)
....+.++..+ .+.... .. ...............+.......|.. ..+.+
T Consensus 301 Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L 380 (652)
T KOG2376|consen 301 LSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLL 380 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHH
Confidence 00001111000 000000 00 00000001112222333333333333 56788
Q ss_pred hHHHHHhchhhHHHHHHHHHh--------hhcchhhhhhhhHHH-HHHhhhh-------HHHHHHHHHHHHHhCCCcHHH
Q 008818 456 GFAAVQKTHHEVAAAFETEEN--------ELSKMEECAGAGESA-FLDQASA-------VNVAKECLLAALKADPKAAHI 519 (552)
Q Consensus 456 ~~~~~~~~~~~~~~A~~~~~~--------~l~~~~~~~~~~la~-~~~~~~~-------~~~A~~~~~~al~~~p~~~~~ 519 (552)
.++.+...+|+++.|+..+.. ..+-.......+.+. .+.+.++ +++|+.++.....-.+.....
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 889999999999999999883 222111111111111 2333333 455555555544444444455
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 520 WANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 520 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
+-.++.+-.+.|+-++|...+++.++..+.
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 666677777778888888888888776543
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.62 E-value=8.3e-14 Score=142.20 Aligned_cols=259 Identities=11% Similarity=0.008 Sum_probs=177.1
Q ss_pred hCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHH
Q 008818 152 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 231 (552)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (552)
.+|.+..+|..|...|...|++++|+..++.+++..|+. ...++..|.++. +.+++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~------------i~~yy~~G~l~~-----------q~~~~~ 82 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS------------ISALYISGILSL-----------SRRPLN 82 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc------------eehHHHHHHHHH-----------hhcchh
Confidence 468888888888888888888888888888888875542 122333333322 112211
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
++ +...++.......++ .+++++...+...+++..+++.+|.||..+|++++|...|+++++.
T Consensus 83 ~~----------------~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 83 DS----------------NLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred hh----------------hhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 11 222555555555666 6666666666667777788888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 008818 312 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 391 (552)
Q Consensus 312 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 391 (552)
+|+++.+..++|..+. .. ++++|+.++.+++.. +...++|..+.
T Consensus 146 D~~n~~aLNn~AY~~a---------------------e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~ 189 (906)
T PRK14720 146 DRDNPEIVKKLATSYE---------------------EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIE 189 (906)
T ss_pred CcccHHHHHHHHHHHH---------------------Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHH
Confidence 8888888888888876 45 888888888888765 66677888899
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHH
Q 008818 392 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 471 (552)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 471 (552)
.++.+.+..+|++......+-........ +..+
T Consensus 190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~----------------------------------------------~~~~- 222 (906)
T PRK14720 190 EIWSKLVHYNSDDFDFFLRIERKVLGHRE----------------------------------------------FTRL- 222 (906)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhhhc----------------------------------------------cchh-
Confidence 99999999888877655433221110000 0000
Q ss_pred HHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 472 ETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 472 ~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
...+.-+=.+|...++|++++..++.+|+.+|.|..+...++.||. +.|.. ...|++.+++.
T Consensus 223 -----------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 223 -----------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred -----------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 0011112227778888999999999999999999999999999987 44444 55555555543
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.62 E-value=1e-13 Score=140.82 Aligned_cols=199 Identities=10% Similarity=0.059 Sum_probs=167.4
Q ss_pred ChHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKA-VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 234 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 234 (552)
++.++..+-.+....|..++| .+...++-++.. ..+ ......+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~---------------~~~~~~~~~ 72 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQVLE-------------------RHA---------------AVHKPAAAL 72 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHHHHH-------------------Hhh---------------hhcchHhhH
Confidence 455666677777777877776 344444444310 001 112224555
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
..........|.+++++.+||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~ 152 (694)
T PRK15179 73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS 152 (694)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence 55566667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 008818 315 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 394 (552)
Q Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 394 (552)
+..+++.+|.++. +.|++++|+.+|++++..+|++..++..+|.++...|+.++|...|
T Consensus 153 ~~~~~~~~a~~l~---------------------~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 153 SAREILLEAKSWD---------------------EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred CHHHHHHHHHHHH---------------------HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcchHH
Q 008818 395 EKAAKLEPNCMSTRY 409 (552)
Q Consensus 395 ~~al~~~p~~~~~~~ 409 (552)
+++++...+-...+.
T Consensus 212 ~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 212 QAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHhhCcchHHHH
Confidence 999998776654433
No 92
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.3e-12 Score=110.21 Aligned_cols=162 Identities=16% Similarity=0.162 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 229 ELEEILSKLKESMQ------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 229 ~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
+.++-++.+...+. ..++...++-....+.+..|+.+-|..++++.....|....+....|..+...|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 33555555554443 345555666777888889999999999999999889999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008818 303 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 382 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 382 (552)
++|+..++-+|.+...+.....+.. .+|+.-+|++.+...++..+.+.++|..++.+|.
T Consensus 107 e~y~~lL~ddpt~~v~~KRKlAilk---------------------a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 107 EYYESLLEDDPTDTVIRKRKLAILK---------------------AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHH---------------------HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999999999999888876665555 7888889999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 383 LTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
..|+|++|.-+|++++-+.|.++..+..+
T Consensus 166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rl 194 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQPFNPLYFQRL 194 (289)
T ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999999999999876444333
No 93
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.59 E-value=1.4e-14 Score=130.02 Aligned_cols=281 Identities=17% Similarity=0.152 Sum_probs=205.8
Q ss_pred cCchhHHHHHHHHHHHHhcCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQA----VVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQ 294 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~ 294 (552)
.+.|++...+..|+.+++...++. .+|..||++|+.+++|++|+++-..=+.+ .-..+...-+||.++--
T Consensus 28 ck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv 107 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV 107 (639)
T ss_pred HhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh
Confidence 355677999999999999887764 46778999999999999999976544332 22345667899999999
Q ss_pred cCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhhcccccccccccccchh-HHHhcCHHHHHHHHHHHHhcC
Q 008818 295 SGDMEQSAKCFQDLILKDQ------NHPAALINYAALLLCKYGSVLAGAGANTGEGAC-LDQASAVNVAKECLLAALKAD 367 (552)
Q Consensus 295 ~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~ 367 (552)
+|.|++|+.+..+-+.+.. ....+++++|.+|..++......... ..|.. -.....++.|+++|..-+++.
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe--e~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE--EKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh--hcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888775432 23567889999988653322110000 00000 112234566777777766653
Q ss_pred CC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhh
Q 008818 368 PK------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR 441 (552)
Q Consensus 368 p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (552)
.. ...++-+||..|+-+|+|+.|+..-+.-+.+.....+--
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA--------------------------------- 232 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA--------------------------------- 232 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH---------------------------------
Confidence 32 245678899999999999999998877666543221100
Q ss_pred cCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--------chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC
Q 008818 442 EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQASAVNVAKECLLAALKAD 513 (552)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (552)
....++.++|.++.-.|+++.|++.|+..+. .......|.||..|.-..++++||.++.+-+.+.
T Consensus 233 -------aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 233 -------AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred -------HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0125788999999999999999999998443 3344668899999999999999999999888764
Q ss_pred C------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 514 P------KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 514 p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
. ....+++.||..+..+|..++|+.+.++.+++.
T Consensus 306 qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 306 QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3 356788999999999999999999999988765
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.5e-12 Score=107.76 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=157.2
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
+..|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++-+|.+...+...-.+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 45677799999999999889999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 008818 305 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 384 (552)
Q Consensus 305 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 384 (552)
+...++..+++.++|..++.+|+ ..|+|++|.-++++.+-+.|.++..+..+|.+++.+
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~---------------------~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYL---------------------SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---------------------hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999 899999999999999999999999999999999987
Q ss_pred C---ChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 008818 385 G---DHRSSGKCLEKAAKLEPNCMSTRYAVAVS 414 (552)
Q Consensus 385 ~---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 414 (552)
| +++-|.++|.++++++|.+..+++++.++
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 7 46789999999999999888888877554
No 95
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.58 E-value=2e-13 Score=122.70 Aligned_cols=308 Identities=14% Similarity=0.085 Sum_probs=216.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHH
Q 008818 161 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 240 (552)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 240 (552)
..-|.-++++|+....+.+|+.|++.- ..++..+..++..+|.+ |+-.++|++|+++-..-
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvG--------TeDl~tLSAIYsQLGNA-----------yfyL~DY~kAl~yH~hD 81 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVG--------TEDLSTLSAIYSQLGNA-----------YFYLKDYEKALKYHTHD 81 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhc--------chHHHHHHHHHHHhcch-----------hhhHhhHHHHHhhhhhh
Confidence 345778899999999999999999973 34455455555555554 56667779999875543
Q ss_pred Hh------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCH----------
Q 008818 241 MQ------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDM---------- 298 (552)
Q Consensus 241 l~------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~---------- 298 (552)
+. ..-..+..--+||+++--.|.|++|+.++.+-+.+.. ....+++++|.+|...|+-
T Consensus 82 ltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g 161 (639)
T KOG1130|consen 82 LTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKG 161 (639)
T ss_pred HHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcc
Confidence 32 2223355667899999999999999999988776532 2357899999999887652
Q ss_pred ---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC------
Q 008818 299 ---EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------ 369 (552)
Q Consensus 299 ---~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------ 369 (552)
+++...++.+.+..-.+......++.. .+.-..+-++|..|.-+|+|+.|+..-+.-+.+...
T Consensus 162 ~f~~ev~~al~~Av~fy~eNL~l~~~lgDr--------~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa 233 (639)
T KOG1130|consen 162 AFNAEVTSALENAVKFYMENLELSEKLGDR--------LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA 233 (639)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344445555544332222222222222 223344456788888999999999988877776433
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCC
Q 008818 370 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 449 (552)
Q Consensus 370 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (552)
.-.++.++|.++.-+|+++.|+++|++.+.+.-. +++. ..
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie------------lg~r----------------------------~v 273 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE------------LGNR----------------------------TV 273 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH------------hcch----------------------------hH
Confidence 3468899999999999999999999998754211 1000 01
Q ss_pred CHHHHHhHHHHHhchhhHHHHHHHHHhhhc--------chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC-----CC-
Q 008818 450 PPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQASAVNVAKECLLAALKAD-----PK- 515 (552)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~- 515 (552)
.++..+.+|..|.-..++++||.++++-+. .....+.|.||..+-..|..++|+.+.++.+++. +.
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sg 353 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSG 353 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcch
Confidence 134677899999999999999999988443 2234778999999999999999999998888753 22
Q ss_pred cHHHHHHHHHHHHHcCChhH
Q 008818 516 AAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 516 ~~~~~~~lg~~~~~~g~~~~ 535 (552)
...+..++...-..+|..+.
T Consensus 354 elTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 354 ELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhhhhhhHHHHHHhCCCcc
Confidence 34566777777777776543
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3e-11 Score=114.10 Aligned_cols=361 Identities=13% Similarity=0.041 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHH
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 238 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 238 (552)
.++.--..+...|+|++|+....+.+...|++..... ....| .++.++|++|+...+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~----------cKvVa-------------lIq~~ky~~ALk~ik 70 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIR----------CKVVA-------------LIQLDKYEDALKLIK 70 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHh----------hhHhh-------------hhhhhHHHHHHHHHH
Confidence 3344445566789999999999999999766532211 11111 457788999995554
Q ss_pred HHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 239 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 239 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
.-....-. ....+..+.|+++++..++|+..++ ..++.+..+....|++++++|+|++|+..|+..++.+.++.+.
T Consensus 71 k~~~~~~~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 71 KNGALLVI-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred hcchhhhc-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 43322222 1223789999999999999999999 4566777789999999999999999999999999877665544
Q ss_pred HHHHHHHHHH--hhc--------ccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC--------C-------cHHH
Q 008818 319 LINYAALLLC--KYG--------SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--------K-------AAHI 373 (552)
Q Consensus 319 ~~~l~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~-------~~~~ 373 (552)
.......-.. ... .........++.+-++...|+|.+|++.+++++++.. . -..+
T Consensus 147 ~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 147 ERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 3222211111 000 0111344566788888999999999999999955421 1 1346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHh---hccC-------------------------c
Q 008818 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE---RSQE-------------------------P 425 (552)
Q Consensus 374 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~---~~~~-------------------------~ 425 (552)
...++.++..+|+.++|...|...+..+|.+.....-.. ..+-... ...+ .
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~-NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAV-NNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHh-cchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 788999999999999999999999999887653322111 0000000 0000 0
Q ss_pred hHH----------HhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhh---hhhhHHHH
Q 008818 426 TEQ----------LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC---AGAGESAF 492 (552)
Q Consensus 426 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~la~~ 492 (552)
... +........+.........|..................+.++...+....+..+.. ..+.++..
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 000 00001111111111111112211112222222333335667777776655544443 56677778
Q ss_pred HHhhhhHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 493 LDQASAVNVAKECLLAAL--------KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 493 ~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.+..|+++.|+..+...+ +.. ..|.+-..+-.+++..++.+-|...+.+|+.-+.
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 888888888888888332 221 2345555566667777888888888888877653
No 97
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=9.2e-11 Score=107.82 Aligned_cols=352 Identities=12% Similarity=0.085 Sum_probs=218.8
Q ss_pred HhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhH
Q 008818 151 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 230 (552)
Q Consensus 151 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 230 (552)
+.+--+...|...|..-..++++..|...|++||..+-.+ .+-++..+.. .++....
T Consensus 67 rrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-----itLWlkYae~------------------Emknk~v 123 (677)
T KOG1915|consen 67 RRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-----ITLWLKYAEF------------------EMKNKQV 123 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-----chHHHHHHHH------------------HHhhhhH
Confidence 3344445555556666666666666666666665542111 1111111110 2334444
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
..|...+.+++.+-|.--..|+....+-..+|+...|.+.|++-++..|+ ..+|......-.+.++.+.|...|++.+-
T Consensus 124 NhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 124 NHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 55666666666666666667777777777777777777777777777775 56676666666777777777777777776
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCh
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDH 387 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~ 387 (552)
.+|+ ...|...+..-. +.|+..-|...|+++++.-.+ +..+....|..-..++.+
T Consensus 203 ~HP~-v~~wikyarFE~---------------------k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 203 VHPK-VSNWIKYARFEE---------------------KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred eccc-HHHHHHHHHHHH---------------------hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 445555555544 677777777777777765444 233444555556667778
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHH-HHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhh
Q 008818 388 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG-NEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 466 (552)
Q Consensus 388 ~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (552)
+.|.-.|+-++..-|.+..-........+....... ..+..+. ..-.-........+|-+.++|+..-.+....|+
T Consensus 261 ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~---~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 261 ERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDK---EGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcch---hhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC
Confidence 888888888888877763222222222221111111 1111100 000001112223356778899999999999999
Q ss_pred HHHHHHHHHhhhcchhhh----h-------hhhHHH-HHHhhhhHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHc
Q 008818 467 VAAAFETEENELSKMEEC----A-------GAGESA-FLDQASAVNVAKECLLAALKADPK----AAHIWANLANAYYLT 530 (552)
Q Consensus 467 ~~~A~~~~~~~l~~~~~~----~-------~~~la~-~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~ 530 (552)
.+.-.+.|.+++...++. . |.+.+. .-+...+.+.+.+.|+.+|++-|. .+.+|...|....++
T Consensus 338 ~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 338 KDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence 999999999988754441 1 222211 123567889999999999999986 478899999999999
Q ss_pred CChhHHHHHHHHHHHHhcccC
Q 008818 531 GDHRSSGKCLEKVLMVYCSSN 551 (552)
Q Consensus 531 g~~~~A~~~~~~al~l~~~~~ 551 (552)
.+...|.+.+..|+-.+|...
T Consensus 418 ~~l~~ARkiLG~AIG~cPK~K 438 (677)
T KOG1915|consen 418 LNLTGARKILGNAIGKCPKDK 438 (677)
T ss_pred cccHHHHHHHHHHhccCCchh
Confidence 999999999999998888653
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=3.8e-11 Score=117.80 Aligned_cols=420 Identities=14% Similarity=0.051 Sum_probs=242.9
Q ss_pred hhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----C
Q 008818 98 NKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG-----Q 172 (552)
Q Consensus 98 ~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g-----~ 172 (552)
...|+...++ ..+.+....-.+.......+|.. ....|..++|...+...+..+|+|...+..+..+..-.. .
T Consensus 15 ~e~g~~~~AL-~~L~~~~~~I~Dk~~~~E~rA~l-l~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEAL-EHLEKNEKQILDKLAVLEKRAEL-LLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHH-HHHHhhhhhCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 3344444443 44444333444444555556666 667788888888888888888888888888887773332 3
Q ss_pred chHHHHHHHHHHHHHhhcccccc-------chhHHHHHHHhhhhcccccccCCCcc----c-cccCchhHHHHHHHHHH-
Q 008818 173 PLKAVSSYEKAEEILLRCEADIA-------RPELLSLVQIHHAQCLLPESSGDNSL----D-KELEPEELEEILSKLKE- 239 (552)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~----~-~~~~~~~~~~A~~~~~~- 239 (552)
.+.-..+|++.....|....... ...+...+..+.... ...|-.+. . .|-...+..-....+..
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~---l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ---LRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHH---HhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 55556777766666554321100 111111111111100 01111000 0 01112222222222222
Q ss_pred --HHhc------------Ccch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 240 --SMQS------------DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 240 --al~~------------~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
.++. .|.. .++++.++..|...|++++|+++.+++|...|..++.+...|.++-+.|++.+|..
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 2211 1111 35678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC---------cHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---------AAHIW 374 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~ 374 (552)
.++.+..+++.+.-.....+..++ +.|+.++|.+.+....+.+.+ ..+..
T Consensus 250 ~~~~Ar~LD~~DRyiNsK~aKy~L---------------------Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 250 AMDEARELDLADRYINSKCAKYLL---------------------RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHH---------------------HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 999999999988777666666666 899999999999887765522 23444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCc----chHHH-------HHHHHHHhHhhccCchHHHhHHHHHHHHH----
Q 008818 375 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCM----STRYA-------VAVSRIKDAERSQEPTEQLSWAGNEMASI---- 439 (552)
Q Consensus 375 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~-------la~~~l~~~~~~~~~~~~~~~~~~~~~~~---- 439 (552)
...|.+|.+.|++..|++.|..+.+...+.. +.+.. .+...+............+..+...+..+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999998887643322 11111 11222222222222222233332222222
Q ss_pred hhcCCCCCCC---------CHHHHHhHHH-HH--hchhhHHHHHHHHHhhh----------cchhh--hhhhhHHHHHHh
Q 008818 440 LREGDPVQIE---------PPIAWAGFAA-VQ--KTHHEVAAAFETEENEL----------SKMEE--CAGAGESAFLDQ 495 (552)
Q Consensus 440 ~~~~~~~~~~---------~~~~~~~~~~-~~--~~~~~~~~A~~~~~~~l----------~~~~~--~~~~~la~~~~~ 495 (552)
.......... .+.-...... .- ....+-+++...-.+.. ..... .----.|.-+..
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~~ 468 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLLK 468 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHhc
Confidence 1111110000 0000000000 00 00011111111000000 00000 001123445555
Q ss_pred hhh-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 008818 496 ASA-VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 543 (552)
Q Consensus 496 ~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 543 (552)
..+ .++|.++++..++..|++.+.|..--.+|.+.|++-.|++++.+|
T Consensus 469 t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 469 TEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred CCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 553 789999999999999999999999999999999999999998765
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=1.5e-12 Score=111.22 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=119.8
Q ss_pred HHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008818 240 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 319 (552)
Q Consensus 240 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 319 (552)
+...+|.+..++..+|....+.|++.+|+..++++..+.|++..+|..+|.+|.+.|+++.|...|.+++++.|+++...
T Consensus 92 ~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 92 SAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred hhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence 33345666777777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008818 320 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 397 (552)
.++|..++ -.|+++.|..++..+....+.+..+..+++.+...+|++++|...-.+-
T Consensus 172 nNlgms~~---------------------L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 172 NNLGMSLL---------------------LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhHHHHHH---------------------HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99998888 8899999999999998888888999999999999999999988766543
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=2.7e-12 Score=109.62 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=147.1
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 229 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 229 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+...+..+|...+..|++..|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3455777777788899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 388 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 388 (552)
..+.|++..+|..+|.+|. +.|+++.|...|.+++++.|.++.+..++|..|.-.|+++
T Consensus 127 ~~l~p~d~~~~~~lgaald---------------------q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALD---------------------QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred hccCCCChhhhhHHHHHHH---------------------HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 9999999999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchHHHH
Q 008818 389 SSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~~~~l 411 (552)
.|..++..+...-+.+.....++
T Consensus 186 ~A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred HHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999988777665444333
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.53 E-value=4.4e-13 Score=109.77 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=112.6
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
..|++++..+|++..+.+.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 315 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
++..++.+|.++. ..|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLL---------------------ALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999888 89999999999999999999876643
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.53 E-value=4.5e-13 Score=109.70 Aligned_cols=119 Identities=21% Similarity=0.217 Sum_probs=113.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHH
Q 008818 269 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 348 (552)
Q Consensus 269 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (552)
..|++++..+|++....+.+|.++...|++++|+..|++++..+|.++..+..+|.++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--------------------- 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ--------------------- 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------
Confidence 46889999999999999999999999999999999999999999999999999999988
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
..|++++|+..++++++.+|+++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 889999999999999999999999999999999999999999999999999999887544
No 103
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=3.9e-13 Score=116.90 Aligned_cols=119 Identities=21% Similarity=0.202 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 328 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 328 (552)
+-+..-|.-+++.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..+|.+++
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~- 160 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL- 160 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-
Confidence 3455567777777888888888888888888888888888888888888888888888888888887777777777777
Q ss_pred hhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 008818 329 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 388 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 388 (552)
.+|++++|++.|+++|.++|++...+.+|..+-..+++..
T Consensus 161 --------------------~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 --------------------ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --------------------ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 7777888888888888888887777777777766666555
No 104
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=119.81 Aligned_cols=104 Identities=20% Similarity=0.347 Sum_probs=99.3
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
.++.++|.+|+..|.+||+++|+++..|.+++-+|.++|.++.|++.++.+|.++|....+|..||.+|..+|++++|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
.|+++|.++|++...+.+|..+-.
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999988777766654
No 105
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=2.9e-10 Score=108.39 Aligned_cols=414 Identities=14% Similarity=0.120 Sum_probs=269.5
Q ss_pred hhhchhhHhhhhhhhhhhhhCCCCccccccCC-----Cc--cchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008818 98 NKLGKCRSRISSKMDSALEFGVDADGDQSGLG-----TS--SSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 170 (552)
Q Consensus 98 ~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g-----~~--~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~ 170 (552)
++.|.-...+.-.|++|+...|.+...|+.-- .+ ..-....+.....++++++..--+.+.+|.........+
T Consensus 36 ~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q 115 (835)
T KOG2047|consen 36 HKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQ 115 (835)
T ss_pred HHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 34444444445678999999999998887411 00 033467888899999999987778889999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHH
Q 008818 171 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVV 250 (552)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 250 (552)
|+...-...|.+||...|-.......+-++.... ..+-++-++..|++.++.+|...+
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~---------------------~~~lPets~rvyrRYLk~~P~~~e- 173 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVE---------------------SHGLPETSIRVYRRYLKVAPEARE- 173 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHH---------------------hCCChHHHHHHHHHHHhcCHHHHH-
Confidence 9999999999999998776544333333332222 223347788888888888887533
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------CCC---------------------CHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAV------------------------DPN---------------------NCDCI 285 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~------------------------~p~---------------------~~~~~ 285 (552)
.....+...+++++|.+.|...+.. +|+ ....|
T Consensus 174 --eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw 251 (835)
T KOG2047|consen 174 --EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLW 251 (835)
T ss_pred --HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHH
Confidence 3345566677777777777666543 121 12367
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHH-----hh------cccccc---------------
Q 008818 286 GNLGIAYFQSGDMEQSAKCFQDLILKDQ---NHPAALINYAALLLC-----KY------GSVLAG--------------- 336 (552)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~-----~~------~~~~~~--------------- 336 (552)
..||..|.+.|.+++|...|++++..-- +....+...+..-.. .. +....+
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 8899999999999999999999886421 222222111111000 00 000000
Q ss_pred -----------------cccccccchhHHHhcCHHHHHHHHHHHHhc-CCC-----cHHHHHHHHHHHHHcCChHHHHHH
Q 008818 337 -----------------AGANTGEGACLDQASAVNVAKECLLAALKA-DPK-----AAHIWANLANAYYLTGDHRSSGKC 393 (552)
Q Consensus 337 -----------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~la~~~~~~~~~~~A~~~ 393 (552)
.+.| .-.+-...|+..+-+..|.++++. +|. -...|..+|..|...|+.+.|...
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW--~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEW--HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHH--HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 0000 112223457788888888888764 554 457899999999999999999999
Q ss_pred HHHHHhhCCCCc----chHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCC------------CCC------CCH
Q 008818 394 LEKAAKLEPNCM----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP------------VQI------EPP 451 (552)
Q Consensus 394 ~~~al~~~p~~~----~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~------~~~ 451 (552)
|+++....-... ..|...|...+. .+ .+ +...++++.+.. ..| ...
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElr-----h~---~~----~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELR-----HE---NF----EAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHh-----hh---hH----HHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 999998754332 222222221111 11 11 111122222222 222 344
Q ss_pred HHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHH
Q 008818 452 IAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAHIWANLANAY 527 (552)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~ 527 (552)
.+|..++......|-++.....|.+.++ -..+....+.|..+....-|+++.+.|++-+.+.+ .-.++|...-.-+
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 5778888888888888888888888554 45556666788888889999999999999999864 4556665433322
Q ss_pred ---HHcCChhHHHHHHHHHHHHhcc
Q 008818 528 ---YLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 528 ---~~~g~~~~A~~~~~~al~l~~~ 549 (552)
+.--..+.|...|++||+.+|.
T Consensus 558 i~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 3344678999999999998874
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=5e-11 Score=116.98 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=58.5
Q ss_pred cchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 343 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 343 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+++.|...|++++|+++++++|+..|..++.+...|.++-..|++.+|..+++.+-.+++.+-
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 466666999999999999999999999999999999999999999999999999999998763
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.48 E-value=1.3e-12 Score=126.13 Aligned_cols=221 Identities=15% Similarity=0.196 Sum_probs=182.8
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHH
Q 008818 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 233 (552)
Q Consensus 154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 233 (552)
|..+..-..+|..+...|-...|+..|++.-.. .....+|..+| +-.+|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw--------------------~~vi~CY~~lg-----------~~~ka 443 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMW--------------------DPVILCYLLLG-----------QHGKA 443 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHH--------------------HHHHHHHHHhc-----------ccchH
Confidence 566777889999999999999999999986443 22233333344 34899
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008818 234 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 234 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 313 (552)
..+..+-++ .|.++..|..+|.+.....-|++|.++.+.. +..+...+|......++|+++.++++..++++|
T Consensus 444 eei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 444 EEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 999999898 6667889999999988877777777777653 345778888888889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 008818 314 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 393 (552)
Q Consensus 314 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 393 (552)
-....|+.+|.+.+ +.+++..|.++|...+.++|++..+|++++.+|...|+-.+|...
T Consensus 517 lq~~~wf~~G~~AL---------------------qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 517 LQLGTWFGLGCAAL---------------------QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHhccHHHH---------------------HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 99999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHH
Q 008818 394 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 473 (552)
Q Consensus 394 ~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 473 (552)
++++++.+-++.. +|.+.-.+...-|.+++|+..
T Consensus 576 l~EAlKcn~~~w~----------------------------------------------iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 576 LKEALKCNYQHWQ----------------------------------------------IWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHHhhcCCCCCe----------------------------------------------eeechhhhhhhcccHHHHHHH
Confidence 9999998865543 455555566677788888888
Q ss_pred HHhhhc
Q 008818 474 EENELS 479 (552)
Q Consensus 474 ~~~~l~ 479 (552)
|.+.++
T Consensus 610 ~~rll~ 615 (777)
T KOG1128|consen 610 YHRLLD 615 (777)
T ss_pred HHHHHH
Confidence 877443
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=3.4e-10 Score=102.36 Aligned_cols=273 Identities=19% Similarity=0.109 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLC 328 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~ 328 (552)
....-|..-+..|+|.+|.....+.-+..+...-++..-+.+-..+|+++.|-.++.++-+..+++. ......+.++.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll- 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL- 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-
Confidence 3444566677789999999999998887777777777788888999999999999999988754433 33445555555
Q ss_pred hhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc--
Q 008818 329 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS-- 406 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 406 (552)
..|++..|.....++++..|.++.+......+|...|++......+.+.-+..--+..
T Consensus 165 --------------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 165 --------------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 8899999999999999999999999999999999999999999888877664332221
Q ss_pred -hHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc------
Q 008818 407 -TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS------ 479 (552)
Q Consensus 407 -~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------ 479 (552)
-+-..+...+.+.....+-.+.+.. ..+........++.+-..++.-+..+|+.++|.+.....++
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~-------~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKT-------WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHH-------HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 1112222211111111111111111 11111111223456667777777777777777776655432
Q ss_pred ---------------------------chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 008818 480 ---------------------------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 532 (552)
Q Consensus 480 ---------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 532 (552)
+.++..+..||..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~ 376 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE 376 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence 223345778999999999999999999999998874 6778889999999999
Q ss_pred hhHHHHHHHHHHHHhcccC
Q 008818 533 HRSSGKCLEKVLMVYCSSN 551 (552)
Q Consensus 533 ~~~A~~~~~~al~l~~~~~ 551 (552)
..+|.+++++++-++-+++
T Consensus 377 ~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 377 PEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHHHhcCCC
Confidence 9999999999997765543
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=9.1e-11 Score=128.27 Aligned_cols=320 Identities=13% Similarity=0.031 Sum_probs=205.3
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
++.....++.++...|++++|...+.++....+.... ...+... .......+.+ +...|++++|..
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~-~~~~~~~--~~~~~~~a~~-----------~~~~g~~~~A~~ 473 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNI-ELDGTLQ--AEFNALRAQV-----------AINDGDPEEAER 473 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCc-ccchhHH--HHHHHHHHHH-----------HHhCCCHHHHHH
Confidence 3455677888889999999999999988765332110 0011111 1222223333 345677799999
Q ss_pred HHHHHHhcCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 008818 236 KLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 236 ~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
.+++++...+.. ..++..+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...
T Consensus 474 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 474 LAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999998754432 2356778999999999999999999998763321 34567889999999999999999
Q ss_pred HHHHHhhCCCC--------HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC-----CcH
Q 008818 305 FQDLILKDQNH--------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-----KAA 371 (552)
Q Consensus 305 ~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~ 371 (552)
+++++...... ...+..++.++ ...|++++|...+.+++.... ...
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~---------------------~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIRAQLL---------------------WEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHH---------------------HHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 99998763211 11222334444 488999999999999887532 135
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCH
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 451 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (552)
..+..+|.++...|++++|...+.++..+.+...........
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~-------------------------------------- 654 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN-------------------------------------- 654 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH--------------------------------------
Confidence 567778999999999999999999998764432110000000
Q ss_pred HHHHhHHHHHhchhhHHHHHHHHHhhhcchhh------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCC------CcHHH
Q 008818 452 IAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADP------KAAHI 519 (552)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~ 519 (552)
........+...|+.+.|............. ..+..+|.++...|++++|+..+++++.... ....+
T Consensus 655 -~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 655 -ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0000011122234444444444332221111 1123566677777777777777777776421 22456
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 520 WANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 520 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
+..+|.++...|+.++|...+.+|+++...
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 677777778888888888888888777654
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.6e-10 Score=100.06 Aligned_cols=356 Identities=17% Similarity=0.135 Sum_probs=204.2
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
......+..+.+.+..-.+.+|.+-..+..||.||+...+|..|..+|++...+.|.. .. .+.+++..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~---------~q-YrlY~AQS-- 87 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL---------EQ-YRLYQAQS-- 87 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH---------HH-HHHHHHHH--
Confidence 3566778888888888888899999999999999999999999999999988885542 11 11122211
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
.++.+.+.+|+.........+.-.......-+-+.+..+++..+....++.-. .+......+.|.+.
T Consensus 88 -----------LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCll 154 (459)
T KOG4340|consen 88 -----------LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLL 154 (459)
T ss_pred -----------HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchhee
Confidence 23445557777766665543222233344445555666666666555544211 14566677777777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc----CC
Q 008818 293 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DP 368 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p 368 (552)
++.|+++.|++-|+.+++...-++-.-++++.+++ +.|++..|+++..+.++. .|
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy---------------------~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY---------------------SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH---------------------hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 77777777777777777776666666666666666 667777777666555432 33
Q ss_pred C-------------------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCcchHHHHHHHHHHhHhh
Q 008818 369 K-------------------------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP--NCMSTRYAVAVSRIKDAER 421 (552)
Q Consensus 369 ~-------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~l~~~~~ 421 (552)
. -..+++..+.++++.|+++.|.+.+...--... -++....++++......
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~-- 291 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDAR-- 291 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCC--
Confidence 2 124555667778888888887776533211111 12233344444322110
Q ss_pred ccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc---------------------c
Q 008818 422 SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---------------------K 480 (552)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---------------------~ 480 (552)
..+.. ..+.-.+ .+.|-.++.+.++-.++.+..-++-|-..+...-. .
T Consensus 292 p~~g~-------~KLqFLL----~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT 360 (459)
T KOG4340|consen 292 PTEGF-------EKLQFLL----QQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQT 360 (459)
T ss_pred ccccH-------HHHHHHH----hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCC
Confidence 00000 0000111 11233344455555555555544444433322000 0
Q ss_pred hhhhhhh---hHHHHH-H----------------hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 008818 481 MEECAGA---GESAFL-D----------------QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 540 (552)
Q Consensus 481 ~~~~~~~---~la~~~-~----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 540 (552)
.+..+.- .++..+ . ......+|++.|+.++++. ..+....+++|+...++..+.+.|
T Consensus 361 ~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 361 APEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHH
Confidence 0001100 000000 0 1111456677777777663 567888999999999999999999
Q ss_pred HHHHHHhccc
Q 008818 541 EKVLMVYCSS 550 (552)
Q Consensus 541 ~~al~l~~~~ 550 (552)
++..+.+...
T Consensus 438 r~SvefC~eh 447 (459)
T KOG4340|consen 438 RKSVEFCNDH 447 (459)
T ss_pred HHHHhhhccc
Confidence 9999988654
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=4.4e-12 Score=129.04 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=125.8
Q ss_pred HHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 008818 203 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 282 (552)
Q Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 282 (552)
...+..++.+.. ..|.+++|+..++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++
T Consensus 86 ~~~~~~La~i~~-----------~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 86 ELFQVLVARALE-----------AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHHHHHHH-----------HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 445556666644 445559999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHH
Q 008818 283 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 362 (552)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 362 (552)
.+++.+|.++..+|++++|+.+|++++..+|++..++..+|.++. ..|+.++|...|++
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~---------------------~~G~~~~A~~~~~~ 213 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT---------------------RRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHhcCCCcHHHH
Q 008818 363 ALKADPKAAHIW 374 (552)
Q Consensus 363 al~~~p~~~~~~ 374 (552)
+++...+-...+
T Consensus 214 a~~~~~~~~~~~ 225 (694)
T PRK15179 214 GLDAIGDGARKL 225 (694)
T ss_pred HHHhhCcchHHH
Confidence 999876644443
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=9.1e-10 Score=97.72 Aligned_cols=362 Identities=14% Similarity=0.039 Sum_probs=188.6
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccccc
Q 008818 137 EKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 216 (552)
Q Consensus 137 ~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (552)
+++++|...+..+...+--+++.+..|+-+++-+|.|.+|...-.++-+. | -..+....++. ++
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~----------p---L~~RLlfhlah---kl 134 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT----------P---LCIRLLFHLAH---KL 134 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC----------h---HHHHHHHHHHH---Hh
Confidence 34444444444444445556677888888888888888887766665321 1 11122222221 11
Q ss_pred CCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 008818 217 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 296 (552)
Q Consensus 217 g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 296 (552)
++ ++-+-.|...+... .+-...|+.+++..-.|++|++.|++++.-+|+....-..++.||.++.
T Consensus 135 nd------------Ek~~~~fh~~LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD 199 (557)
T KOG3785|consen 135 ND------------EKRILTFHSSLQDT---LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD 199 (557)
T ss_pred Cc------------HHHHHHHHHHHhhh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc
Confidence 11 33333444444322 2334556666666677777777777777777777767777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccccc---------ccccccchhHHH-----hcCHHHHHHHHHH
Q 008818 297 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA---------GANTGEGACLDQ-----ASAVNVAKECLLA 362 (552)
Q Consensus 297 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~~A~~~~~~ 362 (552)
-++-+.+.+.--++..|+.+.+....+..+++......+.. ...+--+..+.+ -.+-+.|+..+-.
T Consensus 200 Yydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~ 279 (557)
T KOG3785|consen 200 YYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS 279 (557)
T ss_pred hhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH
Confidence 77777777777777777777776666555553321111000 000000000000 0111222222222
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH--HHhHhhccCchHHHhHHHHHHHHHh
Q 008818 363 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR--IKDAERSQEPTEQLSWAGNEMASIL 440 (552)
Q Consensus 363 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 440 (552)
.+++ -+++..+|...|.++++.++|+..++ +++|..+.-+...+... +++...+ .+.+..+ +.+...+
T Consensus 280 L~~~---IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gS---reHlKiA-qqffqlV 349 (557)
T KOG3785|consen 280 LMKH---IPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGS---REHLKIA-QQFFQLV 349 (557)
T ss_pred HHhh---ChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCc---HHHHHHH-HHHHHHh
Confidence 2222 35677788888888888888887664 45676665555444432 2221111 1111111 2222222
Q ss_pred hcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhh--hcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC-CCcH
Q 008818 441 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PKAA 517 (552)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 517 (552)
....... +.......++.+++-..++++.+..+... .-..+....+++|++....|++.+|.+.|-++-... .+..
T Consensus 350 G~Sa~ec-DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 350 GESALEC-DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred ccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 2221111 11112334455555555666655554431 123344556677777777777777777776664443 2233
Q ss_pred HHHHHHHHHHHHcCChhHHHHHH
Q 008818 518 HIWANLANAYYLTGDHRSSGKCL 540 (552)
Q Consensus 518 ~~~~~lg~~~~~~g~~~~A~~~~ 540 (552)
.....|+.||...|..+-|-..|
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHH
Confidence 44456777777777777666555
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.45 E-value=5.8e-12 Score=100.57 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=93.7
Q ss_pred HHhcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 240 SMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 240 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
..... ++.-+..+.+|..++..|++++|...|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 67778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC
Q 008818 319 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 367 (552)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 367 (552)
+.+.|.+++ ..|+.+.|.+.|+.++...
T Consensus 106 ~~~ag~c~L---------------------~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYL---------------------ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHh
Confidence 988888888 8889999999999888876
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.43 E-value=1.8e-11 Score=125.32 Aligned_cols=212 Identities=11% Similarity=0.014 Sum_probs=162.9
Q ss_pred hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008818 242 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 321 (552)
Q Consensus 242 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 321 (552)
..+|.+..+|..|...+...+++++|++.++.+++..|+...+++.+|.++.+.+++.++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 457889999999999999999999999999999999999999999999999999997777665 555544433
Q ss_pred HHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008818 322 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 401 (552)
.++ .+++++...+...+++..+++.+|.||.++|++++|...|+++++.+
T Consensus 97 -----------------------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 97 -----------------------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred -----------------------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 233 44555555555567777788888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcch
Q 008818 402 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 481 (552)
Q Consensus 402 p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 481 (552)
|+++.+. .++|..|... +.++|+..+.+++.
T Consensus 147 ~~n~~aL----------------------------------------------Nn~AY~~ae~-dL~KA~~m~~KAV~-- 177 (906)
T PRK14720 147 RDNPEIV----------------------------------------------KKLATSYEEE-DKEKAITYLKKAIY-- 177 (906)
T ss_pred cccHHHH----------------------------------------------HHHHHHHHHh-hHHHHHHHHHHHHH--
Confidence 8776444 4444445555 67777777766554
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH--------------------HHHHHHHHHHcCChhHHHHHHH
Q 008818 482 EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI--------------------WANLANAYYLTGDHRSSGKCLE 541 (552)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------~~~lg~~~~~~g~~~~A~~~~~ 541 (552)
.+...++|..+..+.++.+..+|++.+. +.-+-.+|...++|++++.+++
T Consensus 178 ----------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 178 ----------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred ----------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3556667888888888888888876544 2233378889999999999999
Q ss_pred HHHHHhccc
Q 008818 542 KVLMVYCSS 550 (552)
Q Consensus 542 ~al~l~~~~ 550 (552)
.+|++-+.+
T Consensus 248 ~iL~~~~~n 256 (906)
T PRK14720 248 KILEHDNKN 256 (906)
T ss_pred HHHhcCCcc
Confidence 999987653
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=4.9e-12 Score=122.26 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=150.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
+++.|-...|+..|++ ...|-....||...|+..+|.....+-++ .|.++..|..+|.+....--|++|.+
T Consensus 408 l~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawE 478 (777)
T KOG1128|consen 408 LLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWE 478 (777)
T ss_pred HHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHH
Confidence 3344555788887776 45677788888888888888888888888 56667788888887777666677766
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 383 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 383 (552)
+++..-. .+...+|...+ ..++|.++.++++..++++|-....|+.+|.+..+
T Consensus 479 lsn~~sa------rA~r~~~~~~~---------------------~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 479 LSNYISA------RAQRSLALLIL---------------------SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ 531 (777)
T ss_pred HhhhhhH------HHHHhhccccc---------------------cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH
Confidence 6655432 24444444444 67899999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhc
Q 008818 384 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 463 (552)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
.++++.|.++|..++.++|++..+ |.+++..|..
T Consensus 532 lek~q~av~aF~rcvtL~Pd~~ea----------------------------------------------WnNls~ayi~ 565 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPDNAEA----------------------------------------------WNNLSTAYIR 565 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCchhh----------------------------------------------hhhhhHHHHH
Confidence 999999999999999999987644 4555555555
Q ss_pred hhhHHHHHHHHHhhhcch--hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHh
Q 008818 464 HHEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALKA 512 (552)
Q Consensus 464 ~~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (552)
.++-.+|...++++++-. +-..|-+--.+....|.+++|+..|.+.+.+
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 566666666666655533 2233444444666677777777777776654
No 116
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=1e-11 Score=99.12 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=103.2
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhc
Q 008818 273 SLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 351 (552)
Q Consensus 273 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (552)
....+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|++||.++. .+|
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q---------------------~~g 83 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ---------------------AQK 83 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HHh
Confidence 344566 7788899999999999999999999999999999999999999999998 999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 352 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
++.+|+..|.+++.++|+++..+.++|.|++..|+.+.|.+.|+.++.....
T Consensus 84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988743
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.36 E-value=4.5e-10 Score=104.46 Aligned_cols=153 Identities=21% Similarity=0.190 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 279 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 279 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
|....+++..+..++..|++++|+..++..++..|+|+..+...+.+++ ..++..+|.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~---------------------~~nk~~~A~e 361 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL---------------------EANKAKEAIE 361 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHHH
Confidence 7888999999999999999999999999999999999999998888888 8999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHH
Q 008818 359 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 438 (552)
Q Consensus 359 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~ 438 (552)
.+++++.++|+....+.++|.+|.+.|++.+|+..+...+..+|+++
T Consensus 362 ~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp--------------------------------- 408 (484)
T COG4783 362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP--------------------------------- 408 (484)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---------------------------------
Confidence 99999999999999999999999999999999999999999998875
Q ss_pred HhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC
Q 008818 439 ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 513 (552)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (552)
..|..++..|..+|+..++...+.+ .+...|++++|+..+..+.+..
T Consensus 409 -------------~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 409 -------------NGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -------------hHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 4566667777777777666555433 7778888888888888888775
No 118
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=2.3e-09 Score=97.14 Aligned_cols=297 Identities=16% Similarity=0.065 Sum_probs=203.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHH
Q 008818 161 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 240 (552)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 240 (552)
..-|..-...|+|.+|.....++-+..+ .|-..-+.. +.+ ....|+++.|-.++.++
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e-------~p~l~~l~a-----A~A-----------A~qrgd~~~an~yL~ea 144 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGE-------QPVLAYLLA-----AEA-----------AQQRGDEDRANRYLAEA 144 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCc-------chHHHHHHH-----HHH-----------HHhcccHHHHHHHHHHH
Confidence 3446666678999999999888665422 222211111 111 22456669999999999
Q ss_pred HhcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008818 241 MQSDTR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 319 (552)
Q Consensus 241 l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 319 (552)
-+..++ ...+...++.+....|+++.|.....++++..|.++.+......+|...|+|........+.-+..--+..-.
T Consensus 145 ae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 145 AELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred hccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 888443 3456778899999999999999999999999999999999999999999999999999988876543332222
Q ss_pred HHHHH-HHHHhhcccccccccccccchhHHHhcCHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 008818 320 INYAA-LLLCKYGSVLAGAGANTGEGACLDQASAVNVAK---ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 395 (552)
Q Consensus 320 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~---~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 395 (552)
..+-. ++... +.+.++-..+. .+++..-..-..++.+...++.-+..+|++++|.+..+
T Consensus 225 ~~le~~a~~gl-----------------L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 225 ARLEQQAWEGL-----------------LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHHHHH-----------------HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 11111 11100 00222222222 23333322233467788888999999999999999999
Q ss_pred HHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHH
Q 008818 396 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 475 (552)
Q Consensus 396 ~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 475 (552)
.+++..-+.. ....+.. ....+... ..+.++......|++|..+..+|..+.+.+.|.+|-..++
T Consensus 288 ~~Lk~~~D~~-L~~~~~~------l~~~d~~~--------l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 288 DALKRQWDPR-LCRLIPR------LRPGDPEP--------LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHHhccChh-HHHHHhh------cCCCCchH--------HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9998765543 1111111 11111111 1122233333456778999999999999999999999999
Q ss_pred hhhcchhh-hhhhhHHHHHHhhhhHHHHHHHHHHHHHh
Q 008818 476 NELSKMEE-CAGAGESAFLDQASAVNVAKECLLAALKA 512 (552)
Q Consensus 476 ~~l~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (552)
.+++..+. ..+..+|.++.+.|+..+|...+++++.+
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 98886555 55668999999999999999999999854
No 119
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.33 E-value=4.7e-11 Score=113.63 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 330 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 330 (552)
+...|..++..|+|++|+..|++++.++|+++.+++.+|.+|..+|++++|+..+++++.++|++..+++.+|.++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~--- 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM--- 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH---
Confidence 33456666666777777777777777777777777777777777777777777777777777777666666666666
Q ss_pred cccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 008818 331 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 384 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 384 (552)
..|++++|+..|+++++++|++..+...++.|...+
T Consensus 82 ------------------~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 82 ------------------KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ------------------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 666777777777777777777666666666665444
No 120
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.32 E-value=9e-10 Score=98.02 Aligned_cols=314 Identities=17% Similarity=0.131 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 237 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 237 (552)
.-.+.-|.-++...++.+|+..+.+.+.... +.......+-.+..+ .-+.|.|++++..-
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~---------~~~~Rf~~lG~l~~a-----------~s~~g~y~~mL~~a 66 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLS---------DLMGRFRVLGCLVTA-----------HSEMGRYKEMLKFA 66 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHH---------HHHHHHHHhccchhh-----------hhhhHHHHHHHHHH
Confidence 3455667778888999999999999887621 111111222122222 33456667776554
Q ss_pred HHHHhc----Cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 238 KESMQS----DT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 238 ~~al~~----~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
-..+.. .. ...+++.+++..+.+..++.+++.+.+..+.+.... ......+|.++..++.++++++.|+
T Consensus 67 ~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe 146 (518)
T KOG1941|consen 67 VSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFE 146 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHH
Confidence 433332 21 124688899999999999999999999888874332 3567789999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC----------cHHHHHH
Q 008818 307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWAN 376 (552)
Q Consensus 307 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~ 376 (552)
+++++..++.+.... ...+..+|..|.+..++++|+-+..++.++-.. ...+++.
T Consensus 147 ~A~~~A~~~~D~~LE---------------lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh 211 (518)
T KOG1941|consen 147 KALRYAHNNDDAMLE---------------LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH 211 (518)
T ss_pred HHHHHhhccCCceee---------------eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence 999876554443221 222334566666999999999999998876332 2346788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHh
Q 008818 377 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 456 (552)
Q Consensus 377 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (552)
++..+..+|...+|.++.+++.++.-...+- +........
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdr----------------------------------------a~~arc~~~ 251 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDR----------------------------------------ALQARCLLC 251 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCCh----------------------------------------HHHHHHHHH
Confidence 9999999999999999999998763221100 011234667
Q ss_pred HHHHHhchhhHHHHHHHHHhhhcch--------hhhhhhhHHHHHHhhhhHHH-----HHHHHHHHHHhCCC------cH
Q 008818 457 FAAVQKTHHEVAAAFETEENELSKM--------EECAGAGESAFLDQASAVNV-----AKECLLAALKADPK------AA 517 (552)
Q Consensus 457 ~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~la~~~~~~~~~~~-----A~~~~~~al~~~p~------~~ 517 (552)
+|.+|...|+.+.|+..|..+.... ...+..+.|.++....-..+ |+++-++++++... -.
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vl 331 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVL 331 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHH
Confidence 8889999999999888888865422 22455667777766655555 88888888876543 23
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 518 HIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 518 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
..+..++.+|..+|.-++=...+.++-+.
T Consensus 332 K~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 332 KLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 56788999999999888877777665443
No 121
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1e-09 Score=95.15 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=139.4
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
+...+|.+||+++..-.+..|.+...+..+|.||+...+|..|..+|++.-.+.|......+..++.++..+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHhhc-----------ccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 305 FQDLILKDQNH-PAALINYAALLLCKYG-----------SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 305 ~~~al~~~p~~-~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
....... |.- ......-+.+.+...+ ....++......|-+..+.|+++.|++-|+.+++...-++-
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 7655432 110 1111111111111100 01123555667788888999999999999999999988999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008818 373 IWANLANAYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 373 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 400 (552)
+-++++.++++.|++..|+++..+.++.
T Consensus 180 lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988777654
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=3.3e-11 Score=114.66 Aligned_cols=104 Identities=8% Similarity=0.085 Sum_probs=99.0
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
++..|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
.|+++++++|++..+...++.+..
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999888777754
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=5.3e-11 Score=109.01 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=169.4
Q ss_pred ccCchhHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
++-.|+|..++..+.. ...++ ........+.+++..+|+++..+......- .| ...+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~-~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEASL-KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SP-ELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHHC-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SC-CCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhhc-cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--Ch-hHHHHHHHHHHHhCccchHHHH
Confidence 3456888999987772 23333 445677889999999999988776554422 33 3456677777666656777777
Q ss_pred HHHHHHHhhCCC--CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 303 KCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 303 ~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
..++..+..... ++......|.++. ..|++++|++.+.+. .+.++......+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~---------------------~~~~~~~AL~~l~~~-----~~lE~~al~Vqi 140 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILF---------------------HEGDYEEALKLLHKG-----GSLELLALAVQI 140 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHC---------------------CCCHHHHHHCCCTTT-----TCHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHcc-----CcccHHHHHHHH
Confidence 777665543322 2223333333333 789999999888754 567888888999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHH
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 460 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
|..+++++.|.+.++.+-+.+.+........+ |..+
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~a-----------------------------------------wv~l--- 176 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEA-----------------------------------------WVNL--- 176 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHH-----------------------------------------HHHH---
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHH-----------------------------------------HHHH---
Confidence 99999999999999999888776542222222 2111
Q ss_pred HhchhhHHHHHHHHHhhhcch--hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh-hHHH
Q 008818 461 QKTHHEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-RSSG 537 (552)
Q Consensus 461 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~ 537 (552)
.....++.+|+..|+...+.. ....+.+++.+.+..|+|++|...+++++..+|++++++.+++.+...+|+. +.+.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 111235667777777754432 3355668999999999999999999999999999999999999999999999 4455
Q ss_pred HHHHHHHHHhcc
Q 008818 538 KCLEKVLMVYCS 549 (552)
Q Consensus 538 ~~~~~al~l~~~ 549 (552)
+++.+.....|.
T Consensus 257 ~~l~qL~~~~p~ 268 (290)
T PF04733_consen 257 RYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHCHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 666665555443
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.23 E-value=8e-10 Score=102.83 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=132.1
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++.++|+....+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 325 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
+++ +.|++.+|+..++..+..+|+++..|..||.+|..+|+..+|...+-+.+.+....
T Consensus 383 all---------------------~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 383 ALL---------------------KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred HHH---------------------hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 998 99999999999999999999999999999999999999999999998888776654
Q ss_pred c
Q 008818 405 M 405 (552)
Q Consensus 405 ~ 405 (552)
.
T Consensus 442 ~ 442 (484)
T COG4783 442 E 442 (484)
T ss_pred H
Confidence 3
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.23 E-value=1.8e-09 Score=96.51 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=132.7
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcC--
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVV---WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSG-- 296 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g-- 296 (552)
+..|++++|+..|++++...|..+.+ .+.+|.+|++.+++++|+..|++.++..|++ +.+++.+|.++...+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 46788999999999999999987554 4899999999999999999999999998876 567899998865554
Q ss_pred -------------C---HHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 297 -------------D---MEQSAKCFQDLILKDQNHPAA---LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 297 -------------~---~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
+ ..+|+..|++.++..|+..-+ ...+..+.... +...+.+|..|.+.|.|..|+
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l-------a~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL-------AKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCchHHHH
Confidence 1 357889999999999987543 22222221111 222335788899999999999
Q ss_pred HHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008818 358 ECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 358 ~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a 397 (552)
.-++.+++..|+ ..+++..++.+|..+|..++|.......
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999887 5678899999999999999998876543
No 126
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.23 E-value=5.7e-10 Score=94.78 Aligned_cols=102 Identities=12% Similarity=0.199 Sum_probs=87.1
Q ss_pred chhHHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDMEQS 301 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A 301 (552)
...+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 344566667776666555544 668899999999999999999999999988765 345899999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLC 328 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~ 328 (552)
+..|++++.++|.....+..++.++..
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 999999999999999999999988873
No 127
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=3.8e-08 Score=94.40 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=160.3
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHH-HhhccccccchhHHHHHHHhhhhcccccccCCCccccccCch
Q 008818 150 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 228 (552)
Q Consensus 150 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 228 (552)
++.+|++..-|.....++ .|+..+-+..|..|+.. +|. .....+ ...+...+..| -..|
T Consensus 342 LRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~--ka~Gs~-----~~Lw~~faklY-----------e~~~ 401 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPK--KAVGSP-----GTLWVEFAKLY-----------ENNG 401 (835)
T ss_pred HhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcc--cCCCCh-----hhHHHHHHHHH-----------HhcC
Confidence 467899998888877665 58899999999999874 332 222222 22344445443 4456
Q ss_pred hHHHHHHHHHHHHhcCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------CHHHHH
Q 008818 229 ELEEILSKLKESMQSDT----RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------------------NCDCIG 286 (552)
Q Consensus 229 ~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~ 286 (552)
+++.|...|+++++..- +-+.+|...|..-++..+++.|+.+.++|...-.. ...+|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 66999999999997653 23678999999999999999999999999875211 234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc
Q 008818 287 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 366 (552)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 366 (552)
.++......|-++.....|++++.+.--.+....+.+..+. ...-++++.+.|++.+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---------------------eh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---------------------EHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------hhHHHHHHHHHHHcCCcc
Confidence 88888888999999999999999998888888888888877 677799999999999988
Q ss_pred CC--CcHHHHHHHH---HHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 367 DP--KAAHIWANLA---NAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 367 ~p--~~~~~~~~la---~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
.+ .-.++|...- ..-+.-.+.+.|...|++|++..|.
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 64 4445554332 2233345689999999999998873
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.2e-10 Score=97.68 Aligned_cols=127 Identities=21% Similarity=0.280 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccccccccccc
Q 008818 264 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE 343 (552)
Q Consensus 264 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (552)
.+.-+.-++.-+..+|++..-|..||.+|+.+|++..|...|.+++++.|++++.+..++.+++...
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------- 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------- 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------------
Confidence 4555666777778888888888888888888888888888888888888888888888888887431
Q ss_pred chhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 344 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 344 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
......++...|++++..+|.+..+...||..++..|+|.+|+..++..++..|.+..-.
T Consensus 205 -----~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 205 -----GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred -----CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 223467788899999999999999999999999999999999999999999888765443
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.22 E-value=9.4e-09 Score=91.95 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=47.4
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 008818 488 GESAFLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEK 542 (552)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~ 542 (552)
.+|..|.+.|.|..|+.-++.+++..|+ ..++++.++..|..+|..++|......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4556788999999999999999999887 468899999999999999999887653
No 130
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.21 E-value=5.5e-11 Score=84.09 Aligned_cols=67 Identities=31% Similarity=0.610 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 313 (552)
++..|..+|.+++..|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999988
No 131
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.6e-10 Score=97.55 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKC 304 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~ 304 (552)
...+..+.-++.-+..+|++++-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++.... ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 446888888999999999999999999999999999999999999999999999999999999998765 45789999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH
Q 008818 305 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 371 (552)
Q Consensus 305 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (552)
|+++++.+|.+..+...++..++ +.|+|.+|+..++..++..|.+.
T Consensus 216 l~~al~~D~~~iral~lLA~~af---------------------e~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAF---------------------EQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999998 99999999999999999987643
No 132
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=7e-08 Score=105.80 Aligned_cols=344 Identities=13% Similarity=-0.011 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 237 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 237 (552)
..+...+..+...|++.+|+.++..+-.. ..........+..+ ...|++..+...+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-------------~~~~~ll~~~a~~l-----------~~~g~~~~l~~~l 397 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-------------QLLRDILLQHGWSL-----------FNQGELSLLEECL 397 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-------------HHHHHHHHHhHHHH-----------HhcCChHHHHHHH
Confidence 45666777788888888888766554211 11112222222222 2234445555554
Q ss_pred HHHH-hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008818 238 KESM-QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---------NCDCIGNLGIAYFQSGDMEQSAKCFQD 307 (552)
Q Consensus 238 ~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (552)
..+- .....++.....++.++...|++++|...+..+....+. .......+|.++...|++++|...+++
T Consensus 398 ~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 477 (903)
T PRK04841 398 NALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAEL 477 (903)
T ss_pred HhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4321 011223445667888889999999999999988664221 134556678889999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHH
Q 008818 308 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAY 381 (552)
Q Consensus 308 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~ 381 (552)
++...+.........+.. .+|.++...|++++|...+.+++..... ...++..+|.++
T Consensus 478 al~~~~~~~~~~~~~a~~----------------~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 478 ALAELPLTWYYSRIVATS----------------VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhcCCCccHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 998655432211111111 1244445899999999999999875332 234667889999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCc----c--h--HHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCC-CCCCHH
Q 008818 382 YLTGDHRSSGKCLEKAAKLEPNCM----S--T--RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV-QIEPPI 452 (552)
Q Consensus 382 ~~~~~~~~A~~~~~~al~~~p~~~----~--~--~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 452 (552)
...|++++|...+++++.+..... . . ...++...... .. +..+...+...+...... ......
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~-------~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-AR-------LDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cC-------HHHHHHHHHHhHHhhhccCchHHHH
Confidence 999999999999999988633211 0 1 11111111111 11 111111111111111111 112345
Q ss_pred HHHhHHHHHhchhhHHHHHHHHHhhhcchhh----hhh-h----hHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----HH
Q 008818 453 AWAGFAAVQKTHHEVAAAFETEENELSKMEE----CAG-A----GESAFLDQASAVNVAKECLLAALKADPKAA----HI 519 (552)
Q Consensus 453 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~-~----~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~ 519 (552)
.+..++.++...|++++|...+......... ..+ . .....+...|+.+.|..++.......+... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 6677899999999999999988775432110 001 1 112344567889999999877665333222 22
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 520 WANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 520 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
+..+|.++...|++++|...+++++.....
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999987643
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.18 E-value=3.9e-09 Score=92.26 Aligned_cols=174 Identities=19% Similarity=0.183 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 236 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 236 (552)
+..++..|..++..|++.+|+..|++.+...|..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---------------------------------------------- 38 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS---------------------------------------------- 38 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS----------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----------------------------------------------
Confidence 4566777777777777777777777776664432
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcC-----------CHHHHH
Q 008818 237 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSG-----------DMEQSA 302 (552)
Q Consensus 237 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g-----------~~~~A~ 302 (552)
|.-..+.+.+|.+++..|++++|+..|++.+...|++ +.+++.+|.+++.+. ...+|+
T Consensus 39 --------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 39 --------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp --------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 2235678889999999999999999999999998876 457888888876543 345899
Q ss_pred HHHHHHHhhCCCCHHHH---HHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 008818 303 KCFQDLILKDQNHPAAL---INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA---AHIWAN 376 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 376 (552)
..|+..+...|+..-+- ..+..+-.. .....+.+|..|.+.|.+..|+..++.+++..|+. ..++..
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~-------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNR-------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 99999999999875442 222222111 12233456888889999999999999999999984 457888
Q ss_pred HHHHHHHcCChHHHH
Q 008818 377 LANAYYLTGDHRSSG 391 (552)
Q Consensus 377 la~~~~~~~~~~~A~ 391 (552)
++.+|..+|..+.|.
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 899999999888443
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.18 E-value=8e-10 Score=88.18 Aligned_cols=107 Identities=23% Similarity=0.336 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALIN 321 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 321 (552)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++...|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3577889999999999999999999999988876 5688999999999999999999999999988875 566777
Q ss_pred HHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 008818 322 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 375 (552)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 375 (552)
+|.++. ..|++++|+..++++++..|++..+..
T Consensus 82 ~~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQ---------------------ELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHH---------------------HhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 777777 889999999999999999998766543
No 135
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.17 E-value=1.1e-09 Score=93.43 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=76.4
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 320 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 320 (552)
.+..+.+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|++...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34567789999999999999999999999999887653 578999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008818 321 NYAALLL 327 (552)
Q Consensus 321 ~l~~~~~ 327 (552)
.+|.++.
T Consensus 111 ~lg~~~~ 117 (172)
T PRK02603 111 NIAVIYH 117 (172)
T ss_pred HHHHHHH
Confidence 9998887
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.16 E-value=1.4e-09 Score=86.79 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++. ..|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY---------------------AQGKYADAAK 60 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH---------------------hhccHHHHHH
Confidence 4678999999999999999999999999999876 467778888887 9999999999
Q ss_pred HHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 359 CLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 359 ~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
.|++++..+|++ +.++..+|.++...|++++|+.++++++...|++..+.
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 999999998884 67899999999999999999999999999999876543
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.15 E-value=1.8e-08 Score=88.08 Aligned_cols=186 Identities=19% Similarity=0.192 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 320 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 320 (552)
.+..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..|++.++..|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35677788888888888888888888888877654 567788888888888888888888888888877653 344
Q ss_pred HHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008818 321 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 400 (552)
.+|.+++ .. . ...+ ......+...+|+..|+..+..
T Consensus 84 ~~g~~~~---------------------~~-----~----~~~~--------------~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 84 MLGLSYY---------------------KQ-----I----PGIL--------------RSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHHH---------------------HH-----H----HHHH---------------TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------Hh-----C----ccch--------------hcccChHHHHHHHHHHHHHHHH
Confidence 4444333 11 0 0000 2233445567999999999999
Q ss_pred CCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc
Q 008818 401 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 480 (552)
Q Consensus 401 ~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 480 (552)
.|++..+...... +. .+ ..
T Consensus 120 yP~S~y~~~A~~~--l~-----------------------------------------~l------------------~~ 138 (203)
T PF13525_consen 120 YPNSEYAEEAKKR--LA-----------------------------------------EL------------------RN 138 (203)
T ss_dssp -TTSTTHHHHHHH--HH-----------------------------------------HH------------------HH
T ss_pred CcCchHHHHHHHH--HH-----------------------------------------HH------------------HH
Confidence 9997644322111 00 00 00
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHH
Q 008818 481 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSG 537 (552)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~ 537 (552)
.-..--+.+|..|.+.|.|..|+..++.+++..|+. .+++..++.+|.++|..+.|.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 001112345668889999999999999999999985 478899999999999998554
No 138
>PRK11906 transcriptional regulator; Provisional
Probab=99.13 E-value=3.8e-09 Score=99.02 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=130.3
Q ss_pred chhHHHHHHHHHHHH---hcCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008818 227 PEELEEILSKLKESM---QSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 294 (552)
Q Consensus 227 ~~~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 294 (552)
....+.|+.+|.+++ .++|..+.+|..++.|++.. ....+|....+++++++|.++.++..+|.++..
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 345689999999999 99999999999999998865 245678899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 295 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 295 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
.++++.|+..|++++.++|+.+.+++..|.+.. -.|+.++|++.++++++++|....+-
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~---------------------~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHF---------------------HNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCchhhHHH
Confidence 999999999999999999999999999999888 89999999999999999999865544
Q ss_pred HHHHHH-HHHcCChHHHHHHHHHHHh
Q 008818 375 ANLANA-YYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 375 ~~la~~-~~~~~~~~~A~~~~~~al~ 399 (552)
...-.+ .+.....++|++.|-+--+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhhccc
Confidence 433333 3445557888888866443
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.12 E-value=2.8e-10 Score=80.42 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=61.9
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHhc
Q 008818 483 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG-DHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~~ 548 (552)
...|+.+|.++...|++++|+.+|+++++++|+++.+|+++|.++..+| ++++|+..|++++++-|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567889999999999999999999999999999999999999999999 79999999999999864
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.12 E-value=2.4e-10 Score=84.22 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=73.1
Q ss_pred chhHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 227 PEELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
.|++++|+..++++++.+|. +...++.+|.+|++.|++++|+..+++ ...++.+...++.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 47889999999999999995 567888899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 008818 305 FQDL 308 (552)
Q Consensus 305 ~~~a 308 (552)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.12 E-value=5.9e-09 Score=103.38 Aligned_cols=142 Identities=16% Similarity=0.159 Sum_probs=116.6
Q ss_pred CcchHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 008818 244 DTRQAVVW--NTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--------DMEQSAKCFQDLIL 310 (552)
Q Consensus 244 ~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~ 310 (552)
-|.+..+| +..|.-+...++ +.+|+.+|+++++++|++..++..++.+|.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45555544 456777766554 789999999999999999999999988886542 34566666677666
Q ss_pred h--CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 008818 311 K--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 388 (552)
Q Consensus 311 ~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 388 (552)
+ +|..+.++..++.... ..|++++|...+++++.++|+ ..+|..+|.++...|+++
T Consensus 413 l~~~~~~~~~~~ala~~~~---------------------~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 413 LPELNVLPRIYEILAVQAL---------------------VKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNR 470 (517)
T ss_pred cccCcCChHHHHHHHHHHH---------------------hcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHH
Confidence 4 6777777877777766 789999999999999999995 889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcch
Q 008818 389 SSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~ 407 (552)
+|+..|++|+.++|.++..
T Consensus 471 eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 471 LAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHhcCCCCchH
Confidence 9999999999999998753
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.11 E-value=1.6e-09 Score=82.67 Aligned_cols=99 Identities=24% Similarity=0.370 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 329 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 329 (552)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+...+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-- 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH--
Confidence 577889999999999999999999999999988899999999999999999999999999999988888888888877
Q ss_pred hcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 330 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
..|++++|...+.++++.+|.
T Consensus 80 -------------------~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 -------------------KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred -------------------HHHhHHHHHHHHHHHHccCCC
Confidence 888899999999999887763
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=1.3e-08 Score=84.34 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
.+..++.+|..|-..|-+.-|.-.|.+++.+.|+.+.+++.+|..+...|+++.|.+.|+..++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
+ -.|++.-|.+.+.+-.+.+|+++.
T Consensus 144 Y---------------------Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 Y---------------------YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred e---------------------ecCchHhhHHHHHHHHhcCCCChH
Confidence 5 567777777777777777777654
No 144
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.10 E-value=7.2e-11 Score=104.08 Aligned_cols=91 Identities=5% Similarity=-0.078 Sum_probs=56.0
Q ss_pred HHHHHhchhhHHHHHHHHHhhhcchhhhhhh-hHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH
Q 008818 457 FAAVQKTHHEVAAAFETEENELSKMEECAGA-GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 457 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 535 (552)
-|..+...|.++.++..+..........+.+ .-+..+.+..+++.++..+.+++-.+|.........|.+---.|...+
T Consensus 240 ~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E 319 (536)
T KOG4648|consen 240 PGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKE 319 (536)
T ss_pred cchhhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhh
Confidence 3455566667777777766644433333322 225577777888888888888887777655555555555555556666
Q ss_pred HHHHHHHHHHHh
Q 008818 536 SGKCLEKVLMVY 547 (552)
Q Consensus 536 A~~~~~~al~l~ 547 (552)
+...++.++.+-
T Consensus 320 ~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 320 VKPTKQTAVKVA 331 (536)
T ss_pred cCcchhheeeec
Confidence 666666665544
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.10 E-value=4.8e-10 Score=78.07 Aligned_cols=65 Identities=22% Similarity=0.394 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008818 252 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 316 (552)
Q Consensus 252 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 316 (552)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999874
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.10 E-value=1.9e-09 Score=82.22 Aligned_cols=99 Identities=30% Similarity=0.434 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHH
Q 008818 284 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 363 (552)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 363 (552)
+++.+|.++...|++++|+..++++++..|.+...+..++.++. ..+++++|+..|+++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~ 60 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY---------------------KLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999888888888887 889999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 364 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 364 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
+...|.+..++..+|.++...|++++|...+.+++...|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999988773
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.6e-09 Score=95.00 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 237 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 237 (552)
......|+.|++.|+|..|...|++|+......... +.++... .
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------------------------------~~ee~~~-~ 252 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------------------------------DEEEQKK-A 252 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------------------------------CHHHHHH-H
Confidence 345677999999999999999999999864321000 0011100 0
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008818 238 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 317 (552)
Q Consensus 238 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 317 (552)
.. --..++.+++.|+.++++|.+|+..+.++|.++|+|..+++..|.++..+|+++.|+..|++++++.|+|..
T Consensus 253 ~~------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 253 EA------LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HH------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 00 013578899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 008818 318 ALINYAALLL 327 (552)
Q Consensus 318 ~~~~l~~~~~ 327 (552)
+...+..+..
T Consensus 327 ~~~el~~l~~ 336 (397)
T KOG0543|consen 327 ARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHH
Confidence 8888877665
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=1.1e-08 Score=84.64 Aligned_cols=216 Identities=14% Similarity=0.076 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 360 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 360 (552)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.+++.+|..+. ..|+++.|.+.|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~---------------------~a~~fdaa~eaF 122 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT---------------------QAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH---------------------hcccchHHHHHh
Confidence 45678889999999999999999999999999999999999998887 899999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHh
Q 008818 361 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 440 (552)
Q Consensus 361 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 440 (552)
+..++++|.+-.++.+.|..++.-|++.-|.+.+.+..+.+|+++.-...+-+... . .+ ...+...+....
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~---k--~d----P~~A~tnL~qR~ 193 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ---K--LD----PKQAKTNLKQRA 193 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh---h--CC----HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998743322221111 0 00 111111111111
Q ss_pred hcCCCCCCCCHHHHHhHHHHHhchhhH--HHHHHHHHh------hhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHh
Q 008818 441 REGDPVQIEPPIAWAGFAAVQKTHHEV--AAAFETEEN------ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 512 (552)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~------~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (552)
.... ...|- ...+-...|+. +...+.... .+...-..+++.+|..+...|+.++|...|+-++..
T Consensus 194 ~~~d------~e~WG-~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 194 EKSD------KEQWG-WNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred Hhcc------Hhhhh-HHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1111 11221 11112222222 222222221 222333456777888888888888888888877776
Q ss_pred CCCc----HHHHHHHHHHHHHcCCh
Q 008818 513 DPKA----AHIWANLANAYYLTGDH 533 (552)
Q Consensus 513 ~p~~----~~~~~~lg~~~~~~g~~ 533 (552)
+--+ -.+.+.|+.+.....+.
T Consensus 267 nVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 267 NVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred hHHHHHHHHHHHHHHHHhccccchh
Confidence 5432 13344455554444333
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.09 E-value=9.4e-09 Score=84.72 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=97.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhccc
Q 008818 260 KSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSV 333 (552)
Q Consensus 260 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~ 333 (552)
..++...+...++..++..|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+.+.++.+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~------ 96 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL------ 96 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH------
Confidence 6788899988999999999987 5678889999999999999999999999977654 234555666665
Q ss_pred ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
..|++++|+..++.. ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 97 ---------------~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 ---------------QQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---------------HcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999763 3344467788999999999999999999999875
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.09 E-value=4.1e-09 Score=86.87 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=95.2
Q ss_pred CchhHHHHHHHHHHHHhcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDME 299 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 299 (552)
..++...+...++..+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+.+.+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3466688888899999988887 5678889999999999999999999999987654 457889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 300 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
+|+..++. +...+-.+.++..+|.++. ..|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~---------------------~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYL---------------------AQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHhC
Confidence 99999966 2333333445555565555 9999999999999875
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.09 E-value=1.5e-08 Score=93.72 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDP--N----NCDCIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNHPAALIN 321 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~ 321 (552)
..+...+.++.+. ++++|+.+|++++.+.- + -..++..+|.+|... |++++|+++|++++.+....... ..
T Consensus 76 ~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-~~ 153 (282)
T PF14938_consen 76 KAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-HS 153 (282)
T ss_dssp HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-HH
T ss_pred HHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-hh
Confidence 4555566666555 88888888888887621 1 145788999999998 99999999999999874332211 11
Q ss_pred HHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC------c-HHHHHHHHHHHHHcCChHHHHHHH
Q 008818 322 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------A-AHIWANLANAYYLTGDHRSSGKCL 394 (552)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~-~~~~~~la~~~~~~~~~~~A~~~~ 394 (552)
...++. .+|.++...|+|++|++.|+++....-+ . ...+...+.|++..||+..|...+
T Consensus 154 a~~~~~--------------~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 154 AAECLL--------------KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHH--------------HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122221 2344555999999999999999875432 1 235567788999999999999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHH
Q 008818 395 EKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 395 ~~al~~~p~~~~~~~~la~~~l 416 (552)
++....+|......-......+
T Consensus 220 ~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 220 ERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHH
Confidence 9999999987766544433333
No 152
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=1.9e-09 Score=98.82 Aligned_cols=157 Identities=22% Similarity=0.195 Sum_probs=112.0
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DMEQS 301 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A 301 (552)
+...|++++|++.+.+. .+.++......++...++++.|.+.++.+-+.+.+..-.....+++....| .+.+|
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 34567778887777654 445666677778888888888888888887777776666666666666655 47888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 381 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 381 (552)
...|++.....+..+..+..++.+.+ .+|+|++|.+.+.+++..+|.++.++.+++.+.
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l---------------------~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHL---------------------QLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHH---------------------HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 88888877766677777777777766 788888888888888888888888888888888
Q ss_pred HHcCCh-HHHHHHHHHHHhhCCCCcc
Q 008818 382 YLTGDH-RSSGKCLEKAAKLEPNCMS 406 (552)
Q Consensus 382 ~~~~~~-~~A~~~~~~al~~~p~~~~ 406 (552)
..+|+. +.+.+++.+....+|+++.
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHhCCChhHHHHHHHHHHHhCCCChH
Confidence 888887 5566677777777887653
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.05 E-value=3.2e-09 Score=90.44 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHH
Q 008818 279 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 355 (552)
Q Consensus 279 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (552)
+....+++.+|.++...|++++|+.+|++++...|+. ..++..+|.++. ..|++++
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~ 90 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------------SNGEHDK 90 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------------HcCCHHH
Confidence 3557789999999999999999999999999987764 356777777776 9999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhhCCCC
Q 008818 356 AKECLLAALKADPKAAHIWANLANAYYLTGD--------------HRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 356 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 404 (552)
|+..+.+++...|++...+..+|.++...|+ +++|+.++++++..+|++
T Consensus 91 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 91 ALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999999999999999887 577888888888888876
No 154
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.2e-09 Score=95.17 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----N-----------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 313 (552)
......|+.|++.|+|..|...|++++..-.. + ..++.+++.|+.++++|.+|+....++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34567899999999999999999999876321 1 23678888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH-HH
Q 008818 314 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GK 392 (552)
Q Consensus 314 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~ 392 (552)
+|..+++..|.++. ..|+++.|+..|++++++.|+|-.+...+..+..+..++.+. .+
T Consensus 289 ~N~KALyRrG~A~l---------------------~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 289 NNVKALYRRGQALL---------------------ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred CchhHHHHHHHHHH---------------------hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887 788888888888888888888888888888887776666554 67
Q ss_pred HHHHHHhhCC
Q 008818 393 CLEKAAKLEP 402 (552)
Q Consensus 393 ~~~~al~~~p 402 (552)
.|.+++..-+
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 7777776544
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=4.7e-09 Score=89.16 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhcccccc
Q 008818 262 GRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAG 336 (552)
Q Consensus 262 ~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~ 336 (552)
..+..+...+...++..+.. ..+++.+|.++...|++++|+..|++++.+.|+. ..++.++|.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--------- 83 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--------- 83 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH---------
Confidence 34556666665555555544 6678999999999999999999999999987764 346777877777
Q ss_pred cccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHhhCC
Q 008818 337 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY-------LTGDHR-------SSGKCLEKAAKLEP 402 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~~~~~-------~A~~~~~~al~~~p 402 (552)
..|++++|+..|++++.++|.....+..+|.++. .+|+++ +|+.+|++++..+|
T Consensus 84 ------------~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 84 ------------SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred ------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999998 777766 66666667777788
Q ss_pred CCc
Q 008818 403 NCM 405 (552)
Q Consensus 403 ~~~ 405 (552)
++.
T Consensus 152 ~~~ 154 (168)
T CHL00033 152 GNY 154 (168)
T ss_pred ccH
Confidence 654
No 156
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.04 E-value=4.3e-08 Score=101.80 Aligned_cols=218 Identities=15% Similarity=0.079 Sum_probs=181.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHH-HhhccccccchhHHHHHHHhhhhcccccccCCCccc
Q 008818 144 TGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLD 222 (552)
Q Consensus 144 ~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (552)
..+++.+..+|+.+-.|...-....+.++.++|.+.+++||.. ++.. ....+..+-++.++-..|
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE-----eeEKLNiWiA~lNlEn~y--------- 1510 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE-----EEEKLNIWIAYLNLENAY--------- 1510 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch-----hHHHHHHHHHHHhHHHhh---------
Confidence 4566777789999999999999999999999999999999975 2211 222333333444443332
Q ss_pred cccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 223 KELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 223 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
|.-+.-.+.|++|.+... -..+|..|..+|...+++++|.++|+..++...+....|..+|..+++..+-+.|.
T Consensus 1511 -----G~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1511 -----GTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred -----CcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHH
Confidence 223666778888876543 24678889999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHhhCCC--CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 303 KCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 303 ~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
..+.+|++.-|. +.......+.+-+ +.|+.+.+...|+..+..+|...++|..+...
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEF---------------------k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEF---------------------KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHh---------------------hcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 999999999998 6666777777776 99999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCC
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p 402 (552)
-.+.|+.+.+...|++++.+.=
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999998753
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.03 E-value=1.2e-09 Score=76.00 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=58.6
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 488 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++++++.|.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 578899999999999999999999999999999999999999999999999999999998864
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=99.02 E-value=1.4e-08 Score=81.66 Aligned_cols=110 Identities=11% Similarity=0.043 Sum_probs=94.6
Q ss_pred HHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 239 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 239 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
.+..+.++.-+..+..|.-++..|++++|...|+-....+|.+++.|..||.++..+++|++|+..|..+..++++++..
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 34445666677888889999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc
Q 008818 319 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 370 (552)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (552)
.+..|.+++ ..|+.+.|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l---------------------~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQL---------------------LMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHH---------------------HhCCHHHHHHHHHHHHh-Ccch
Confidence 888888887 88999999999999888 3543
No 159
>PRK11906 transcriptional regulator; Provisional
Probab=99.01 E-value=1.6e-08 Score=94.93 Aligned_cols=162 Identities=12% Similarity=0.101 Sum_probs=125.5
Q ss_pred hHHhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcc
Q 008818 135 REEKVSSLKTGLVHVA---RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 211 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 211 (552)
.......|...|.+++ ..+|..+.+|..++.+++..-.
T Consensus 270 t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~--------------------------------------- 310 (458)
T PRK11906 270 TPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL--------------------------------------- 310 (458)
T ss_pred CHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH---------------------------------------
Confidence 3456666777777777 7777777777777777664310
Q ss_pred cccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008818 212 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 291 (552)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 291 (552)
+|.. . ...+..+|....+++++++|.|+.++..+|.++...++++.|+..|++|+.++|+.+.+++..|.+
T Consensus 311 ----~g~~----~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 311 ----HGKS----E-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred ----hcCC----C-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 0000 0 234458889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 292 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL-LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
....|+.++|++.++++++++|....+-...-.+ .+ -....+.|+..|-+-.+
T Consensus 382 ~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY---------------------VPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH---------------------cCCchhhhHHHHhhccc
Confidence 9999999999999999999999876553322222 22 34457788887765443
No 160
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.01 E-value=5.1e-10 Score=98.85 Aligned_cols=181 Identities=10% Similarity=-0.001 Sum_probs=143.0
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
|+++|.|++|+.+|.+++..+|.++..+.+++.+|+++..|..|...+..++.++.....+|...|.+-..+|+..+|.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccc---------c-----ccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVL---------A-----GAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
.++.++++.|++.+..-.++.+-.-+..... + +.-.....|..+...|.++.++.++.+.+..+.+
T Consensus 187 D~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~ 266 (536)
T KOG4648|consen 187 DCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDD 266 (536)
T ss_pred hHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCc
Confidence 9999999999988776555544322211111 1 1111233577777888888888888777666555
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 370 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 370 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+..+..+ +..|.+.-+++.++....+++..+|...
T Consensus 267 ~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 267 SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 5444444 6677777778888877777776666543
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.99 E-value=1.2e-08 Score=91.69 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=87.4
Q ss_pred cCchhHHHHHHHHHHHHhcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDM 298 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~ 298 (552)
+..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.+|.++..+|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 35688899999999999999987 579999999999999999999999999998776 578999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHH
Q 008818 299 EQSAKCFQDLILKDQNHPAAL 319 (552)
Q Consensus 299 ~~A~~~~~~al~~~p~~~~~~ 319 (552)
++|+..|+++++..|+...+.
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999987654
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.9e-09 Score=79.42 Aligned_cols=47 Identities=34% Similarity=0.299 Sum_probs=24.3
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 396 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 396 (552)
+.|++++|+..+++ .+.++.+...++.+|.++..+|++++|+.+|++
T Consensus 37 ~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 37 QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 55555555555555 444444445555555555555555555555544
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.97 E-value=9.4e-09 Score=95.06 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=128.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHH
Q 008818 162 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 241 (552)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 241 (552)
..|.+|...|++++|...|.++....-.. .+....+..+...+.++ ...++++|+..|++++
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~------~~~~~Aa~~~~~Aa~~~------------k~~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKL------GDKFEAAKAYEEAANCY------------KKGDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHT------T-HHHHHHHHHHHHHHH------------HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHH------------HhhCHHHHHHHHHHHH
Confidence 34666667777777777777776653221 11112222333333222 2335678888888887
Q ss_pred hcCc------chHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 242 QSDT------RQAVVWNTLGLILLKS-GRLQSSISVLSSLLAVDP--NN----CDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 242 ~~~p------~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
+..- .-+.++..+|.+|... |++++|+++|++|+.+.. +. ..++..+|.++..+|+|++|+..|+++
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6532 1256788899999999 999999999999998732 12 456789999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHH
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----AHIWANLANAYYL 383 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 383 (552)
....-++....+.....++ ..+.|+...|++..|...+++....+|.. ..+...+-.++..
T Consensus 182 ~~~~l~~~l~~~~~~~~~l--------------~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFL--------------KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHH--------------HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHhhcccccchhHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 8754322211111111111 12334448899999999999999998852 3344444444432
Q ss_pred --cCChHHHHHHHHHHHhhCC
Q 008818 384 --TGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 384 --~~~~~~A~~~~~~al~~~p 402 (552)
...+.+|+..|.+...+++
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---H
T ss_pred CCHHHHHHHHHHHcccCccHH
Confidence 4557788888877666654
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.97 E-value=1.7e-08 Score=100.10 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=108.4
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHc
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--------RLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQS 295 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 295 (552)
..+++..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.+ +|.++.++..+|..+...
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 4567899999999999999999999999888876542 345666677776664 777888999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 296 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 296 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
|++++|...+++++.++| +..++..+|.++. ..|++++|++.|++++.++|.++.
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~---------------------~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE---------------------LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999999 4778888888887 899999999999999999999765
No 165
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.97 E-value=5.1e-08 Score=87.11 Aligned_cols=239 Identities=15% Similarity=0.081 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH------PAALI 320 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 320 (552)
-...-|.-++...++++|+..+.+.+..-.+. ...+-.+..+...+|.+++++.+--..+....+. ..++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888887754332 2344455677788888888877654444332221 12344
Q ss_pred HHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCChHHHHHHHH
Q 008818 321 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANLANAYYLTGDHRSSGKCLE 395 (552)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~ 395 (552)
+++..+ .+..++.+++.+....+.+... -......+|.++..++.++++++.|+
T Consensus 88 nlar~~---------------------e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe 146 (518)
T KOG1941|consen 88 NLARSN---------------------EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFE 146 (518)
T ss_pred HHHHHH---------------------HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHH
Confidence 444443 3777888888888877765322 23567778999999999999999999
Q ss_pred HHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHH
Q 008818 396 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 475 (552)
Q Consensus 396 ~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 475 (552)
+++....++.+.... -.++..+|..+....++++|+....
T Consensus 147 ~A~~~A~~~~D~~LE----------------------------------------lqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 147 KALRYAHNNDDAMLE----------------------------------------LQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHHHHhhccCCceee----------------------------------------eehhhhHHHHHHHHHhhhHHhhhhH
Confidence 999876555433221 1457778888888888888877666
Q ss_pred hhhcch------------hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCChhHHH
Q 008818 476 NELSKM------------EECAGAGESAFLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYLTGDHRSSG 537 (552)
Q Consensus 476 ~~l~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~ 537 (552)
++.+-. ...++|.++..+...|+.-+|.++++++.++. +-......-+|++|...|+.+.|.
T Consensus 187 kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 187 KAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred hHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 644311 12457789999999999999999999998763 224556778999999999999999
Q ss_pred HHHHHHHHHhcc
Q 008818 538 KCLEKVLMVYCS 549 (552)
Q Consensus 538 ~~~~~al~l~~~ 549 (552)
.-|++|+..+.+
T Consensus 267 ~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 267 RRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.96 E-value=1e-06 Score=80.17 Aligned_cols=222 Identities=26% Similarity=0.238 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 228 EELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4557788888888887776 367888899999999999999999999987 688888999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHH-HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC---CcHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAA-LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP---KAAHIWANLAN 379 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~ 379 (552)
.+..++...+.........+. ++. ..|+++.|+..+.+++...| .....+..++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALY---------------------ELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 999999988776444444444 444 89999999999999988776 45667777777
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHH
Q 008818 380 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 459 (552)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (552)
.+...++++.|+..+.+++...+.. ....+..++.
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 210 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDD---------------------------------------------DAEALLNLGL 210 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------------chHHHHHhhH
Confidence 7888999999999999999988874 1234556666
Q ss_pred HHhchhhHHHHHHHHHhhhcchhh--hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC
Q 008818 460 VQKTHHEVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKADPK 515 (552)
Q Consensus 460 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 515 (552)
.+...+++..|+..+...+...+. ..+..++..+...+.++++...+.+++...|.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666666777777777776664443 45556666666666788888888888888886
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=4.6e-08 Score=88.07 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=92.7
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 008818 248 AVVWNTLGLIL-LKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALI 320 (552)
Q Consensus 248 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 320 (552)
...++..|..+ +..|+|++|+..|+..++..|+. +.+++.+|.+|+..|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45667777765 66799999999999999999987 5899999999999999999999999999988875 66777
Q ss_pred HHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 321 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
.+|.++. ..|++++|+..|+++++..|+...+.
T Consensus 222 klg~~~~---------------------~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQ---------------------DKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 7787777 89999999999999999999976543
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.92 E-value=4.3e-08 Score=76.14 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN---HPAALINY 322 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 322 (552)
.+++.+|.++-..|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467788888888888888888888888875433 567888888888888888888888888888777 55566666
Q ss_pred HHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
+.++. ..|+.++|+..+..++.
T Consensus 82 Al~L~---------------------~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALY---------------------NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHH---------------------HCCCHHHHHHHHHHHHH
Confidence 66665 78888888888877664
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=98.90 E-value=2.1e-08 Score=80.67 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=99.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCH
Q 008818 274 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 353 (552)
Q Consensus 274 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (552)
+..+.++..+..+..|.-++..|++++|...|+-....+|.++..|..||.++. .+++|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q---------------------~~k~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ---------------------LKKQF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH---------------------HHHHH
Confidence 344556667788999999999999999999999999999999999999998887 89999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 354 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
++|+..|..+..++++++...+..|.||..+|+.+.|+.+|+.++. .|.+
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999999999999999999999999999999999998 4543
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.88 E-value=7.4e-08 Score=91.23 Aligned_cols=122 Identities=21% Similarity=0.274 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 332 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 332 (552)
.+-.++...++++.|+..|++..+.+|+ +...++.++...++..+|++.+++++...|.+...+...+..++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl----- 245 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL----- 245 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 3455666778999999999999988865 66779999999999999999999999999999888887787777
Q ss_pred cccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 333 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
..++++.|+.+.++++...|++...|..|+.+|..+|+++.|+..+..+-
T Consensus 246 ----------------~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 ----------------SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ----------------hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999998876543
No 171
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.84 E-value=0.00015 Score=73.33 Aligned_cols=227 Identities=12% Similarity=0.004 Sum_probs=135.7
Q ss_pred hHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccc
Q 008818 135 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 214 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (552)
..+.+..|.+.+.++++.+|+..-+....|.++.++|+.++|..+++. +...+.+ +...+.. +-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~~~-----D~~tLq~------l~~~-- 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGLKGT-----DDLTLQF------LQNV-- 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccCCCC-----chHHHHH------HHHH--
Confidence 445677777788888899999999999999999999999999965554 3321111 1111111 1112
Q ss_pred ccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Q 008818 215 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC-IGNLGIAYF 293 (552)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~ 293 (552)
|.+.+++++|...|++++..+|+ .+.++.+=.+|.+-+.|.+-.+.--+.-+..|.++.. |.-+..+..
T Consensus 87 ---------y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 87 ---------YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred ---------HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 33455557777777777777777 6666666667777666665444444444456665543 333333333
Q ss_pred HcCCHHHHHH-----HH----HHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHH-H
Q 008818 294 QSGDMEQSAK-----CF----QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA-A 363 (552)
Q Consensus 294 ~~g~~~~A~~-----~~----~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a 363 (552)
.....+.... +- ++.++.. ..... ..-+.+| -.++...|++++|.+.+.. .
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~-gk~~s-~aE~~Ly-----------------l~iL~~~~k~~eal~~l~~~l 217 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKK-GKIES-EAEIILY-----------------LLILELQGKYQEALEFLAITL 217 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccC-Cccch-HHHHHHH-----------------HHHHHhcccHHHHHHHHHHHH
Confidence 3333333333 11 1111111 00000 0000111 1234478999999999843 3
Q ss_pred Hhc-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 364 LKA-DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 364 l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
.+. .+.+...-......+...++|.+-.+...+++...+++
T Consensus 218 a~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 218 AEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 333 34455555566778888999999999999999999887
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.83 E-value=8.5e-09 Score=72.55 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=40.7
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 290 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 290 (552)
+.|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 34566666666666666666666666666666666666666666666666666666555555443
No 173
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=3.4e-08 Score=80.76 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=91.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 298 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 298 (552)
++..|+|++|...|..+|...|.. ..+|.+.|.++++++.++.|+..+.++|+++|.+..++...+.+|..+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 568899999999999999999864 447888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 299 EQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 299 ~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
++|+..|.++++.+|....+.-....
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 99999999999999988776554443
No 174
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=4.8e-06 Score=82.55 Aligned_cols=224 Identities=17% Similarity=0.154 Sum_probs=132.0
Q ss_pred CchhHHHHHHHHHHH----------HhcCcc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------
Q 008818 226 EPEELEEILSKLKES----------MQSDTR----------QAVVWNTLGLILLKSGRLQSSISVLSSLLAV-------- 277 (552)
Q Consensus 226 ~~~~~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 277 (552)
..++.+.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..|-..
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C 949 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC 949 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe
Confidence 345558888888875 334443 3456777899999999999999999887332
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC--HHHHHHHHHHHHHhhcccccc
Q 008818 278 -------------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK------DQNH--PAALINYAALLLCKYGSVLAG 336 (552)
Q Consensus 278 -------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~--~~~~~~l~~~~~~~~~~~~~~ 336 (552)
...+..+.+.+|..|...|++.+|+..|.++-.. ...+ .+-+.+++.. ..+.....
T Consensus 950 ~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~---s~~~d~v~ 1026 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM---SGGSDLVS 1026 (1416)
T ss_pred eccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh---cCchhHHH
Confidence 3456678999999999999999999998876532 2221 1122222221 11111111
Q ss_pred -------ccccc-ccchhHHHhcCHHHHHHHHHH-----HH-----hcCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008818 337 -------AGANT-GEGACLDQASAVNVAKECLLA-----AL-----KADPK-AAHIWANLANAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 337 -------~~~~~-~~~~~~~~~~~~~~A~~~~~~-----al-----~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 397 (552)
.+.+. .....|.+.|.+.+|++..-+ ++ .++|+ ++.++..-+..+....+|++|+..+-.+
T Consensus 1027 aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1027 AARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11111 112345555555555543321 11 22343 6888888888899999999998776544
Q ss_pred H------hhCCCC-cchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCC---CCHHHHHhHHHHHhchhhH
Q 008818 398 A------KLEPNC-MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI---EPPIAWAGFAAVQKTHHEV 467 (552)
Q Consensus 398 l------~~~p~~-~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 467 (552)
- .+..+. ... -+++...+.......+ ....++..+|.+..++|.|
T Consensus 1107 r~~~~AlqlC~~~nv~v-------------------------tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRV-------------------------TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred HHHHHHHHHHhcCCCch-------------------------hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 3 322211 100 0111122222111111 2235677899999999999
Q ss_pred HHHHHHHHhh
Q 008818 468 AAAFETEENE 477 (552)
Q Consensus 468 ~~A~~~~~~~ 477 (552)
..|-+.|.++
T Consensus 1162 h~AtKKfTQA 1171 (1416)
T KOG3617|consen 1162 HAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhhh
Confidence 9888887764
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.81 E-value=3.3e-06 Score=76.78 Aligned_cols=222 Identities=25% Similarity=0.287 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCchHHHHHHHHHHHH--HhhccccccchhHHHHHHHhhhhcccc
Q 008818 138 KVSSLKTGLVHVARKMPK--NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI--LLRCEADIARPELLSLVQIHHAQCLLP 213 (552)
Q Consensus 138 ~~~~a~~~l~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (552)
.+..+...+...+...+. ........+..+...+.+..++..+...+.. .+. ....+...+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~- 104 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN------------LAEALLNLGLL- 104 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc------------hHHHHHHHHHH-
Confidence 444445555555556665 4788899999999999999999999998862 111 11122222222
Q ss_pred cccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHH
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNLG 289 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la 289 (552)
....+++..++..+..++...+.........+. ++...|+++.|+..|.+++...| .........+
T Consensus 105 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 105 ----------LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred ----------HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 234456799999999999988877566666666 89999999999999999988777 4566777778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC
Q 008818 290 IAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 368 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 368 (552)
..+...++++.|+..+.+++...+. ....+..++..+. ..+++..|+..+..++...|
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL---------------------KLGKYEEALEYYEKALELDP 233 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH---------------------HcccHHHHHHHHHHHHhhCc
Confidence 8888999999999999999999998 6777888887777 77899999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 369 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 369 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
.....+..++..+...+.++++...+.+++...|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 87788888888888888899999999999999997
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.81 E-value=2.2e-05 Score=71.46 Aligned_cols=291 Identities=19% Similarity=0.143 Sum_probs=191.3
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhc
Q 008818 164 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 243 (552)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~ 243 (552)
|.+-.-.|+-..|.+.-.++-++...+ .+-+. ..+...+ .+-.|+++.|.+.|+.++.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssD-----qepLI---hlLeAQa-------------al~eG~~~~Ar~kfeAMl~- 148 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSD-----QEPLI---HLLEAQA-------------ALLEGDYEDARKKFEAMLD- 148 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhcc-----chHHH---HHHHHHH-------------HHhcCchHHHHHHHHHHhc-
Confidence 455556678888888877776543222 12222 2222222 2356888999999998884
Q ss_pred CcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHH
Q 008818 244 DTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD---QNHPAAL 319 (552)
Q Consensus 244 ~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 319 (552)
+|+.- -.+..|-.--.+.|..+.|+.+-.++-..-|.-+.++...-......|+|+.|++..+...... ++.. -
T Consensus 149 dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a--e 226 (531)
T COG3898 149 DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA--E 226 (531)
T ss_pred ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH--H
Confidence 44321 1222233334568999999999999999999999998888888899999999999998776432 2221 1
Q ss_pred HHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 320 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
...+.++..+ +.. .-.-+...|...-.+++++.|+....-..-+..++..|+..++-.+++.+.+
T Consensus 227 R~rAvLLtAk--------------A~s-~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 227 RSRAVLLTAK--------------AMS-LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHHHHHH--------------HHH-HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 1222222211 000 0234578899999999999999999999999999999999999999999999
Q ss_pred hCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHH----
Q 008818 400 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE---- 475 (552)
Q Consensus 400 ~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---- 475 (552)
..|.-. .+... ++.+.|+. ++..++
T Consensus 292 ~ePHP~-ia~lY------------------------------------------------~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 292 AEPHPD-IALLY------------------------------------------------VRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred cCCChH-HHHHH------------------------------------------------HHhcCCCc--HHHHHHHHHH
Confidence 988532 11111 01111111 111111
Q ss_pred -hhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 008818 476 -NELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKVLM 545 (552)
Q Consensus 476 -~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~ 545 (552)
..+++++....+.++..-+..|+|..|...-+.+....|. ..++..|+.+-... |+-.++..++-+++.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1344555556666666777777777777777777777775 44666677776544 888887777777764
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.80 E-value=3.3e-08 Score=70.66 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=58.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
|..+|...+++++|++++++++.++|+++..+..+|.++..+|++++|+..|+++++..|++..+....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 356788888899999999999998898888888899999999999999999999998888887765443
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.80 E-value=1.8e-08 Score=70.91 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=60.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 258 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 258 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999998777766554
No 179
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=8.1e-07 Score=92.73 Aligned_cols=252 Identities=12% Similarity=0.056 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN----CDCIGNLGIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~ 305 (552)
.+..+.|.+.+.-+|+....|......+...++.++|.+.+++||.. ++.. ...|..+-.+...-|.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 44567788888899999999999999999999999999999999875 3322 234544444555556677778888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 008818 306 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 385 (552)
Q Consensus 306 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 385 (552)
++|.+... ....+..|..+|. ..+++++|.++|+..++...+...+|..+|..++++.
T Consensus 1521 eRAcqycd-~~~V~~~L~~iy~---------------------k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1521 ERACQYCD-AYTVHLKLLGIYE---------------------KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHHHHhcc-hHHHHHHHHHHHH---------------------HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 88887542 2344555555555 8899999999999999998888999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchh
Q 008818 386 DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 465 (552)
Q Consensus 386 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (552)
+-+.|...+.+|++.-|.... -......+++.++.|
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eH--------------------------------------------v~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEH--------------------------------------------VEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhh--------------------------------------------HHHHHHHHHHHhhcC
Confidence 999999999999998887311 123445566677778
Q ss_pred hHHHHHHHHHhhhcch--hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH-cCChhHHHHHH
Q 008818 466 EVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYL-TGDHRSSGKCL 540 (552)
Q Consensus 466 ~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 540 (552)
+.+.+...+...+... ..+.|.-....-.+.|+.+.+...|++++.+ .|.....+|..-.-|.+ .|+-......=
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 8888877777766655 4466776666667788889999999999876 45566666666666644 46666666666
Q ss_pred HHHHHHhc
Q 008818 541 EKVLMVYC 548 (552)
Q Consensus 541 ~~al~l~~ 548 (552)
.+|.+...
T Consensus 1695 arA~EYv~ 1702 (1710)
T KOG1070|consen 1695 ARAKEYVE 1702 (1710)
T ss_pred HHHHHHHH
Confidence 67777554
No 180
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=4.6e-06 Score=82.64 Aligned_cols=296 Identities=12% Similarity=0.062 Sum_probs=164.6
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHH
Q 008818 162 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 241 (552)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 241 (552)
..+.+...+|..++|..+|++.-..+ ++ +.. |...|.+++|.+..+.-=
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D-----------Ll----------------NKl----yQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD-----------LL----------------NKL----YQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-----------HH----------------HHH----HHhcccHHHHHHHHhhcc
Confidence 34555667777777777777765431 11 001 445566677766655422
Q ss_pred hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCC----------CCHHHHHHHHHHHHHcCCHHHH
Q 008818 242 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL----------LAVDP----------NNCDCIGNLGIAYFQSGDMEQS 301 (552)
Q Consensus 242 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A 301 (552)
++. -...|++.+.-+...++.+.|+++|+++ +.-+| .++..|...|..+...|+.+.|
T Consensus 854 RiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 854 RIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 222 1346777777777888888888888765 22222 2344566667777777777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 381 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 381 (552)
+.+|..+-. |+.+. .+..-+|+.++|-.+.++ ..+..+.+.+|+.|
T Consensus 932 l~~Y~~A~D--------~fs~V---------------------rI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 932 LSFYSSAKD--------YFSMV---------------------RIKCIQGKTDKAARIAEE-----SGDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHhhh--------hhhhe---------------------eeEeeccCchHHHHHHHh-----cccHHHHHHHHHHh
Confidence 777766532 22222 222356777777665543 34677888999999
Q ss_pred HHcCChHHHHHHHHHHHhh------CCCC--cchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHH
Q 008818 382 YLTGDHRSSGKCLEKAAKL------EPNC--MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 453 (552)
Q Consensus 382 ~~~~~~~~A~~~~~~al~~------~p~~--~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (552)
...|++.+|+..|.++-.. ...+ .+-+.++++..-. .+.. .....+++.. ..
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~--------~d~v-----~aArYyEe~g-------~~ 1037 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG--------SDLV-----SAARYYEELG-------GY 1037 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc--------hhHH-----HHHHHHHHcc-------hh
Confidence 9999999999999887543 2211 1112222221000 0000 0001111100 01
Q ss_pred HHhHHHHHhchhhHHHHHHH------------HHhhhcchhh-hhhhhHHHHHHhhhhHHHHHHHHH------HHHHh--
Q 008818 454 WAGFAAVQKTHHEVAAAFET------------EENELSKMEE-CAGAGESAFLDQASAVNVAKECLL------AALKA-- 512 (552)
Q Consensus 454 ~~~~~~~~~~~~~~~~A~~~------------~~~~l~~~~~-~~~~~la~~~~~~~~~~~A~~~~~------~al~~-- 512 (552)
......+|.+.|.+.+|++. ..+.+++... ..+..-+..+....+|++|+..+- .|+.+
T Consensus 1038 ~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1038 AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222344455555555442 2333443333 334456666777777877776543 33332
Q ss_pred --------------CCC---------cHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008818 513 --------------DPK---------AAHIWANLANAYYLTGDHRSSGKCLEKVL 544 (552)
Q Consensus 513 --------------~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 544 (552)
.|. ...++..+|.++.++|.|..|-+-|-+|=
T Consensus 1118 ~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1118 NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 121 24678899999999999999998887763
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.79 E-value=2.2e-07 Score=72.23 Aligned_cols=96 Identities=23% Similarity=0.171 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHH
Q 008818 283 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 359 (552)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 359 (552)
.+++.+|.++-.+|+.++|+..|++++...... ..+++.+|..+. ..|++++|+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------------~LG~~deA~~~ 60 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------------NLGRYDEALAL 60 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------------HcCCHHHHHHH
Confidence 578999999999999999999999999976544 445667777776 99999999999
Q ss_pred HHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 360 LLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 360 ~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
+++++...|+ +..+...++.++...|++++|+..+-.++.
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999898 888899999999999999999999988775
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.77 E-value=1.7e-06 Score=74.90 Aligned_cols=176 Identities=17% Similarity=0.160 Sum_probs=132.3
Q ss_pred cCchhHHHHHHHHHHHHhcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcC--
Q 008818 225 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSG-- 296 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g-- 296 (552)
++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.++ .+++..|.+++..=
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 47789999999999999988865 46888999999999999999999999999988764 46778888876532
Q ss_pred ------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-
Q 008818 297 ------DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK- 369 (552)
Q Consensus 297 ------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 369 (552)
-..+|+..|+..+...|+..-+-.....+-.... .-++.-..+|..|.+.|.+..|+..++.+++..|+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d----~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND----ALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH----HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2357888899999999986433211111111000 00233446789999999999999999999998777
Q ss_pred --cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 370 --AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 370 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
..+++..+..+|..+|-.++|.+.-.-.-.-.|++
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 35678888899999999998887654433334444
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=1.5e-05 Score=80.09 Aligned_cols=236 Identities=13% Similarity=0.118 Sum_probs=142.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
.+..+++.+|+..+.+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 56777777777777777777777777777777777777777777766666655666667777777777777777777777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI-WANLANAYY 382 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~ 382 (552)
+|++++..+|+ ......+-.++. +.+.|.+-.+.--+..+..|.++.. |..+..+..
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayv---------------------R~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYV---------------------REKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 77777777777 555545544444 5555555444444444455654432 333333333
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHh
Q 008818 383 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 462 (552)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (552)
.....+.... .....++. ..+.+.+.... ......-....-.++.
T Consensus 157 s~~~~~~~~~-------------~i~l~LA~--------------------~m~~~~l~~~g--k~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 157 SIFSENELLD-------------PILLALAE--------------------KMVQKLLEKKG--KIESEAEIILYLLILE 201 (932)
T ss_pred hccCCccccc-------------chhHHHHH--------------------HHHHHHhccCC--ccchHHHHHHHHHHHH
Confidence 3322222221 11111111 11223333331 1122222233345667
Q ss_pred chhhHHHHHHHHHhhhcc----hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Q 008818 463 THHEVAAAFETEENELSK----MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 516 (552)
Q Consensus 463 ~~~~~~~A~~~~~~~l~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (552)
.+|++++|...+...+.. .+..........+...++|.+-.+...+++..++++
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 788899999988653332 222222345567788899999999999999999987
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.72 E-value=3.4e-07 Score=86.77 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=105.3
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
.++++.|+..+++..+.+|+ +...++.++...++-.+|++.+.+++...|.+...+...+..+...++++.|+...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46789999999999998876 566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHH
Q 008818 307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 363 (552)
Q Consensus 307 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 363 (552)
+++...|++...|..|+.+|. ..|+++.|+..++.+
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi---------------------~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYI---------------------QLGDFENALLALNSC 294 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHH---------------------hcCCHHHHHHHHhcC
Confidence 999999999999999999998 999999999887754
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.72 E-value=3.3e-07 Score=80.16 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=88.8
Q ss_pred cCchhHHHHHHHHHHHHhcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDM 298 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 298 (552)
+..|+|..|...|...++..|+. +.+++.||.+++.+|++++|...|..+++..|+. +++++.+|.+...+|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 46688999999999999999976 6799999999999999999999999999987754 78999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHH
Q 008818 299 EQSAKCFQDLILKDQNHPAALIN 321 (552)
Q Consensus 299 ~~A~~~~~~al~~~p~~~~~~~~ 321 (552)
++|...|+++++..|+...+...
T Consensus 232 d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999998877543
No 186
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=3e-07 Score=75.35 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
+-.-|+-++..|+|++|..-|..||.+.|..+ .+|.+.|.++.+++.++.|+....++|+++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 34458888999999999999999999988653 4567777778888888888888888888888777777666666
Q ss_pred HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008818 326 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 379 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 379 (552)
|. +..++++|++.|.+++..+|....+...++.
T Consensus 178 ye---------------------k~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 178 YE---------------------KMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HH---------------------hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 65 6677777777777777777775554444333
No 187
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.4e-05 Score=69.06 Aligned_cols=244 Identities=14% Similarity=0.057 Sum_probs=161.9
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
+-.|+|..++..-.+.-... ........+.+.|..+|++..-+......- .....+...++.....-++.+.-+..
T Consensus 19 fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 34577788887777665443 666777788888888888866555443322 12234555566666556666665555
Q ss_pred HHHHHhhCCCCHH-HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 008818 305 FQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 383 (552)
Q Consensus 305 ~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 383 (552)
..+.+........ .+..++ |.++...|++++|+...... .+.++...--.++.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~a--------------------a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLA--------------------AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLK 149 (299)
T ss_pred HHHHHHhhccchhHHHHHHh--------------------hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHH
Confidence 5554433222222 332222 22334889999999887763 345666666678888
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhc
Q 008818 384 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 463 (552)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
+.+++-|...++++.+++.+... ..+|. +|..++ ..
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tL--tQLA~---------------------------------------awv~la---~g 185 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATL--TQLAQ---------------------------------------AWVKLA---TG 185 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHH--HHHHH---------------------------------------HHHHHh---cc
Confidence 88999999999999888765431 11221 233222 12
Q ss_pred hhhHHHHHHHHHhhhcch--hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 008818 464 HHEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 541 (552)
Q Consensus 464 ~~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 541 (552)
.+++..|+-.|+..-+.. ......+++.|.+.+|+|++|...++.+|..++++++++.++-.+-...|...++.+-+-
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 235677777777755533 334566888999999999999999999999999999999999999999998877665443
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.67 E-value=1.2e-07 Score=67.80 Aligned_cols=67 Identities=25% Similarity=0.299 Sum_probs=61.5
Q ss_pred hhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 345 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 345 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
.++...+++++|++++++++..+|+++..|..+|.++..+|++++|+..|+++++..|++.......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4566999999999999999999999999999999999999999999999999999999887665443
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.67 E-value=4.5e-06 Score=67.81 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 230 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA-VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
.+.......+.++..|.. .-.+.||..+...|++.+|...|++++. +.-+++..+..+++..+..+++..|...+++.
T Consensus 72 P~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 355555566666666763 4567899999999999999999999986 45678899999999999999999999999999
Q ss_pred HhhCCC--CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 008818 309 ILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 386 (552)
Q Consensus 309 l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 386 (552)
.+.+|. .++....++.++. ..|++.+|...|+.++...|+ +......+..+.++|+
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~la---------------------a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLA---------------------AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred hhcCCccCCCCchHHHHHHHH---------------------hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 998875 3555666666666 899999999999999999987 7777888999999999
Q ss_pred hHHHHHHHHHHHh
Q 008818 387 HRSSGKCLEKAAK 399 (552)
Q Consensus 387 ~~~A~~~~~~al~ 399 (552)
..+|..-+..+.+
T Consensus 209 ~~ea~aq~~~v~d 221 (251)
T COG4700 209 LREANAQYVAVVD 221 (251)
T ss_pred hhHHHHHHHHHHH
Confidence 8888877765554
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=1e-06 Score=77.10 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAA 324 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 324 (552)
.+..|.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|+++.|...|..+++-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999998875 6899999999999999999999999999987765 567888888
Q ss_pred HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH
Q 008818 325 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 376 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 376 (552)
++. .+|+.++|...|+++++..|+...+...
T Consensus 224 ~~~---------------------~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLG---------------------RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHH---------------------HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 887 9999999999999999999997766543
No 191
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=2e-05 Score=73.79 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=106.0
Q ss_pred hHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhccccccchhHHHHHHHhhhhcccc
Q 008818 135 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEE-ILLRCEADIARPELLSLVQIHHAQCLLP 213 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (552)
....+..++.-.+.+.....+.+.+++..+..++-.|++.+|.+.+...-- ..|. ....|.. ..|..+
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g---~~~T~q~--------~~cif~ 286 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAG---GTITPQL--------SSCIFN 286 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccC---ccccchh--------hhheee
Confidence 344555555556666666678889999999999999999999987765321 1000 0001221 233444
Q ss_pred cccCCCccccccCchhHHHHHHHHHHHHhc---------Cc---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKESMQS---------DT---------RQAVVWNTLGLILLKSGRLQSSISVLSSLL 275 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al 275 (552)
..+|-+ ++..|.|.-+..+|.++++. .| ...+++++.|..|...|++-.|.++|.+++
T Consensus 287 NNlGcI----h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 287 NNLGCI----HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred cCcceE----eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 555555 67777789999999999851 11 235688999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHH
Q 008818 276 AVDPNNCDCIGNLGIAYFQ 294 (552)
Q Consensus 276 ~~~p~~~~~~~~la~~~~~ 294 (552)
...-.+|..|..++.++..
T Consensus 363 ~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCcHHHHHHHHHHHH
Confidence 9999999999999999865
No 192
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.61 E-value=4.5e-05 Score=66.32 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=119.6
Q ss_pred HhcCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH---HHHHHHHHhHhhc
Q 008818 349 QASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY---AVAVSRIKDAERS 422 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~l~~~~~~ 422 (552)
+.|++++|+..|+.+...+|. ...+...++.++++.+++++|+...++-+.+.|.++.+-+ ..++..+......
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 999999999999999999887 4578899999999999999999999999999999887655 3444444333333
Q ss_pred cCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHH
Q 008818 423 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVA 502 (552)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A 502 (552)
.........+...+..++..-....- .+.+-..+..+-..+. .--..+|..|.+.|.+-.|
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Y-a~dA~~~i~~~~d~LA------------------~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRY-APDAKARIVKLNDALA------------------GHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHHH------------------HHHHHHHHHHHHhcChHHH
Confidence 33333344455555555544332110 0111111111111111 1123566689999999999
Q ss_pred HHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHH
Q 008818 503 KECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCL 540 (552)
Q Consensus 503 ~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~ 540 (552)
+..++.+++..|+. .+++..+..+|..+|-.++|...-
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999987764 578888999999999999987764
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.61 E-value=8.8e-08 Score=69.44 Aligned_cols=67 Identities=22% Similarity=0.466 Sum_probs=58.3
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----D---PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
|+-+.++.++|.+|..+|++++|+.+|++++.+ . |....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556789999999999999999999999999976 1 123568999999999999999999999999976
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.60 E-value=1.7e-06 Score=68.26 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALIN 321 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 321 (552)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...+|.+|+..|++++|+..+++.++++|.++. +++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5678889999999999999999999999987754 678999999999999999999999999999998865 4666
Q ss_pred HHHHHH
Q 008818 322 YAALLL 327 (552)
Q Consensus 322 l~~~~~ 327 (552)
.|.+.+
T Consensus 90 ~gL~~~ 95 (142)
T PF13512_consen 90 RGLSYY 95 (142)
T ss_pred HHHHHH
Confidence 666655
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.60 E-value=2.1e-07 Score=87.50 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=66.3
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
.+|+++.+|+++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999855 999999999999999999999999997
No 196
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.57 E-value=6.4e-07 Score=72.84 Aligned_cols=94 Identities=22% Similarity=0.285 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 008818 230 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-- 297 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 297 (552)
++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++||.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5889999999999999999999999998887643 4678889999999999999999999999987654
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008818 298 ---------MEQSAKCFQDLILKDQNHPAALINYA 323 (552)
Q Consensus 298 ---------~~~A~~~~~~al~~~p~~~~~~~~l~ 323 (552)
|++|..+|+++...+|++...+..|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78899999999999999876554443
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.0004 Score=60.36 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=116.2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 246 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 246 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
.+...+..-|.+|+..|++++|+...... .+.++...-..++.++.+++-|.+.++++..++.+ .....|+..
T Consensus 106 sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~a 178 (299)
T KOG3081|consen 106 SNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQA 178 (299)
T ss_pred hhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHH
Confidence 33445566788999999999999988762 45667777788999999999999999999887654 345556666
Q ss_pred HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 326 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+..... ..+++.+|.-+|+..-+..|..+......+.|+..+|+|++|...++.++..+++++
T Consensus 179 wv~la~-----------------ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 179 WVKLAT-----------------GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HHHHhc-----------------cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 653211 445689999999999998888899999999999999999999999999999999988
Q ss_pred chHHHHHH
Q 008818 406 STRYAVAV 413 (552)
Q Consensus 406 ~~~~~la~ 413 (552)
+...++..
T Consensus 242 etL~Nliv 249 (299)
T KOG3081|consen 242 ETLANLIV 249 (299)
T ss_pred HHHHHHHH
Confidence 77766644
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.56 E-value=1.5e-07 Score=68.19 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=54.6
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHHHHh----CCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 484 CAGAGESAFLDQASAVNVAKECLLAALKA----DPK---AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.++..+|.+|...|++++|+.+|++++++ .++ -..++.++|.++...|++++|+++|+++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 45678888999999999999999999965 222 357889999999999999999999999999875
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.54 E-value=2.8e-07 Score=86.65 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=52.7
Q ss_pred chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 480 KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI---WANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 480 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
+....+|+++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+|++|+++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445667777777778888888888888888888887754 888888888888888888888888876
No 200
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.51 E-value=1.8e-06 Score=70.28 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCC
Q 008818 139 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 218 (552)
Q Consensus 139 ~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 218 (552)
++.+.+..+.....+|.+++.++..|.++..+.++...-+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~-------------------------------------- 48 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESK-------------------------------------- 48 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHH--------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHH--------------------------------------
Confidence 455666666666789999999999999999886654322111
Q ss_pred CccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHHHH
Q 008818 219 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-----------LQSSISVLSSLLAVDPNNCDCIGN 287 (552)
Q Consensus 219 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~ 287 (552)
.-+++|+.-|++++.++|+..+++..+|.+|..++. |++|..+|++|...+|++...+..
T Consensus 49 ---------~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 49 ---------KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp ---------HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 113778888999999999999999999999987653 788999999999999998765554
Q ss_pred HHH
Q 008818 288 LGI 290 (552)
Q Consensus 288 la~ 290 (552)
|..
T Consensus 120 Le~ 122 (186)
T PF06552_consen 120 LEM 122 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.50 E-value=2.7e-05 Score=63.44 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=107.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhhccc
Q 008818 255 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL-KDQNHPAALINYAALLLCKYGSV 333 (552)
Q Consensus 255 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~ 333 (552)
+....+.=+.+....-..+.+...|. ..-.+.||.....+|++.+|...|++++. +..+++..+..++...+
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf------ 135 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF------ 135 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH------
Confidence 33444445666666666667777776 34578899999999999999999999985 56778888888888888
Q ss_pred ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
..+++..|...+++..+.+|. .++....+|..+..+|++.+|...|+.++...|+.
T Consensus 136 ---------------a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 136 ---------------AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred ---------------hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 899999999999999998886 67788899999999999999999999999998874
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.47 E-value=1.2e-05 Score=61.19 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA----ALINYAAL 325 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~ 325 (552)
.+-..|.++...|+.+.|++.|.+++.+.|..+.+|.+.++.+.-+|+.++|+..+++++++..+... ++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 34456778888899999999999999999999999999999999999999999999999988654432 34444554
Q ss_pred HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 326 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
|. ..|+-+.|...|+.+-++...
T Consensus 125 yR---------------------l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 125 YR---------------------LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HH---------------------HhCchHHHHHhHHHHHHhCCH
Confidence 44 888889999888887766544
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=2.8e-05 Score=66.92 Aligned_cols=148 Identities=21% Similarity=0.208 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 309 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (552)
+..+..+++-+ ..+.+.+..++...|.|.-.+..+.++++.+ |..+.....+|.+.++.|+.+.|..+|+++-
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44555555543 4567788899999999999999999999998 6788999999999999999999999999665
Q ss_pred hhCC----C--CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 008818 310 LKDQ----N--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 383 (552)
Q Consensus 310 ~~~p----~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 383 (552)
+... . ......+.+. ++.-.+++.+|...|.+.+..+|.++.+.++.|.|+..
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~---------------------i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAF---------------------LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHhhhhccchhHHHHhhhhh---------------------heecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 4321 1 1122223333 34478899999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCc
Q 008818 384 TGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+|+..+|++.++.++...|...
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999764
No 204
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=7.7e-05 Score=63.20 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH-HHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNHP-AAL 319 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~-~~~ 319 (552)
+..|...+.+|.+ ++..+|+.++++++++..+.. ..+..+|.+|..- .++++|+.+|+++-+...... .+.
T Consensus 74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 4456666666544 599999999999999865543 3455889998765 899999999999987654332 222
Q ss_pred HHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCChHHHHH
Q 008818 320 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDHRSSGK 392 (552)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~ 392 (552)
.+...+-. +.+-...++|.+|+..|+++....-++. ..++.-|.|++-..+.-.+..
T Consensus 153 ANKC~lKv----------------A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 153 ANKCLLKV----------------AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred HHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 22222211 3333488999999999999887655543 334566788888899999999
Q ss_pred HHHHHHhhCCCCcchHHHHHH
Q 008818 393 CLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 393 ~~~~al~~~p~~~~~~~~la~ 413 (552)
.+++-.+++|.....+-..-+
T Consensus 217 ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 217 ALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHhcCCcccccHHHHHH
Confidence 999999999998877654433
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.44 E-value=1e-05 Score=63.97 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
.+..++.-|...+..|+|++|++.|+.+....|.. ..+.+.++.+++ ..+++++|+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy---------------------~~~~y~~A~ 67 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY---------------------KQGDYEEAI 67 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 45678999999999999999999999999888764 456777777777 999999999
Q ss_pred HHHHHHHhcCCCc---HHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHhhCCCCcch
Q 008818 358 ECLLAALKADPKA---AHIWANLANAYYLTGD---------------HRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 358 ~~~~~al~~~p~~---~~~~~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 407 (552)
..+++.++++|.+ ..+++..|.+++.+.. ...|...|++.+...|++..+
T Consensus 68 a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 68 AAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999999885 4578999999999877 889999999999999987643
No 206
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.43 E-value=0.00011 Score=74.80 Aligned_cols=289 Identities=13% Similarity=0.034 Sum_probs=183.9
Q ss_pred chHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhc-----Ccch
Q 008818 173 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS-----DTRQ 247 (552)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~ 247 (552)
...|..+|+.+.... .......++.++...+.- ...|.+.|+.+|+.+... .-.+
T Consensus 228 ~~~a~~~~~~~a~~g--------------~~~a~~~~g~~y~~G~~g------~~~d~e~a~~~l~~aa~~~~~~a~~~~ 287 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--------------HSEAQYALGICYLAGTYG------VTQDLESAIEYLKLAAESFKKAATKGL 287 (552)
T ss_pred hhHHHHHHHHHHhhc--------------chHHHHHHHHHHhhcccc------ccccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 467888888877651 122233444443322121 457889999999999761 1114
Q ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 008818 248 AVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPAAL 319 (552)
Q Consensus 248 ~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 319 (552)
+.+.+.+|.+|.+.. ++..|+.+|.++-.. +++.+.+.+|.++..-. +...|.++|..+.. -.+..+.
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~ 363 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAI 363 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHH
Confidence 557788999998853 678899999998876 46788999999998766 57899999999876 4578888
Q ss_pred HHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 008818 320 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKAA 398 (552)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al 398 (552)
+.++.++..-. ....+...|..+|.++.+.. ++.+...++.++..- +++..+.-.+....
T Consensus 364 ~~la~~y~~G~-----------------gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 364 YRLALCYELGL-----------------GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHhCC-----------------CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 89998887321 24568899999999999877 466666666655443 77777777666655
Q ss_pred hhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhh
Q 008818 399 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 478 (552)
Q Consensus 399 ~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 478 (552)
+..-............... ...... ....+...++..+.++.
T Consensus 425 ~~g~~~~q~~a~~l~~~~~--------------------------~~~~~~------------~~~~~~~~~~~~~~~a~ 466 (552)
T KOG1550|consen 425 ELGYEVAQSNAAYLLDQSE--------------------------EDLFSR------------GVISTLERAFSLYSRAA 466 (552)
T ss_pred HhhhhHHhhHHHHHHHhcc--------------------------cccccc------------ccccchhHHHHHHHHHH
Confidence 5433322111111000000 000000 00112333444455555
Q ss_pred cchhhhhhhhHHHHHHhh----hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 008818 479 SKMEECAGAGESAFLDQA----SAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 479 ~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l 546 (552)
...+..+...+|.+|... .+++.|...|.++.... +...+++|.++.. .. +..|..+|.++.+.
T Consensus 467 ~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 467 AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 555556666666666544 34788888888887776 7788888888743 22 67788888777664
No 207
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.40 E-value=9.8e-06 Score=61.64 Aligned_cols=99 Identities=21% Similarity=0.215 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 285 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
+-..|.+....|+.+.|++.|.+++.+.|..+.++.+.+..+. -.|+.++|++.+++++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R---------------------Lq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALR---------------------LQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH---------------------HcCChHHHHHHHHHHH
Confidence 4456788889999999999999999999999999999999988 8899999999999999
Q ss_pred hcCCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 365 KADPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 365 ~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
++..+ .-.++...|.+|..+|+-+.|...|+.+.++....
T Consensus 105 eLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 105 ELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 98655 34578899999999999999999999999887654
No 208
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00057 Score=61.32 Aligned_cols=152 Identities=9% Similarity=-0.009 Sum_probs=126.1
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCCHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN---CDCIGNLGIAYFQSGDMEQS 301 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A 301 (552)
-.|++.+|-..+++.++..|.+.-++..--.+++..|+...-...+++++-. +++- ..+.-.++..+...|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4566699999999999999999999988889999999999999999999877 6665 34555677788899999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC----cHHHHHHH
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----AAHIWANL 377 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l 377 (552)
.+.-++++++++.+.-+...++.++. ..|++.++.+...+.-..-.+ ...-|-.-
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVle---------------------m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLE---------------------MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHH---------------------hcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 99999999999999988888888877 889999999988775443222 12335566
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 008818 378 ANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 378 a~~~~~~~~~~~A~~~~~~al 398 (552)
+.++...+.|+.|+..|.+-+
T Consensus 254 Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhcccchhHHHHHHHHHH
Confidence 888888999999999998755
No 209
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=3.9e-05 Score=71.89 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=107.0
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL-LAVDPN--------NCDCIGNLGIAYFQ 294 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~ 294 (552)
++...++..+....+.++....+.+.+++..+..++..|++.+|.+.+... +...|. ...+|.++|.++++
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 344555566666666666667778889999999999999999999987654 222332 23457899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccc---ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH
Q 008818 295 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV---LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 371 (552)
Q Consensus 295 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (552)
+|.|.-+..+|.++++. ......-| +....-.. .......++.|..|...|+.-.|.++|.++......++
T Consensus 296 ~~~y~~~~~~F~kAL~N----~c~qL~~g--~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 296 LGCYQASSVLFLKALRN----SCSQLRNG--LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHHhcc--CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 99999999999999961 00000000 00000000 00122233445555599999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008818 372 HIWANLANAYYL 383 (552)
Q Consensus 372 ~~~~~la~~~~~ 383 (552)
..|..++.|...
T Consensus 370 rlWLRlAEcCim 381 (696)
T KOG2471|consen 370 RLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.32 E-value=0.0019 Score=59.31 Aligned_cols=228 Identities=14% Similarity=0.081 Sum_probs=154.6
Q ss_pred HHhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccc
Q 008818 136 EEKVSSLKTGLVHVARKMPK--NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (552)
.|+-..+++.-.+.-++-.. .+-++..-+..-.-.|+++.|.+-|+-++.- |....++-- ++-+-
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----------PEtRllGLR--gLyle- 163 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----------PETRLLGLR--GLYLE- 163 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----------hHHHHHhHH--HHHHH-
Confidence 34445555555554433222 3446666778888899999999999998862 332221110 00000
Q ss_pred cccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCH-----HHH
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV---DPNNC-----DCI 285 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~-----~~~ 285 (552)
....|..+.|+.+-+++-...|.-+.++...-...+..|+|+.|++..+..... .++-. ..+
T Consensus 164 ----------Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLL 233 (531)
T COG3898 164 ----------AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLL 233 (531)
T ss_pred ----------HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Confidence 235677799999999999999999999988888889999999999998876543 23221 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 286 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
...+.. .-.-+...|...-.+++++.|+...+-..-+..++ +.|+..++-.+++.+.+
T Consensus 234 tAkA~s-~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf---------------------~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 234 TAKAMS-LLDADPASARDDALEANKLAPDLVPAAVVAARALF---------------------RDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHH-HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH---------------------hccchhhhhhHHHHHHh
Confidence 222222 22346788999999999999999998888888887 89999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCCcchHHHHHH
Q 008818 366 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA---KLEPNCMSTRYAVAV 413 (552)
Q Consensus 366 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~la~ 413 (552)
..|. +. ++.+|....--+.++.-++++- .+.|++....+..+.
T Consensus 292 ~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 292 AEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred cCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 9886 33 3445555444455666555544 456666555544433
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.28 E-value=2e-06 Score=53.84 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 290 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 290 (552)
.++..+|.+|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666666655553
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.28 E-value=7.9e-07 Score=51.69 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHH
Q 008818 505 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 538 (552)
Q Consensus 505 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 538 (552)
+|+++|+++|+++.+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 213
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.3e-06 Score=71.45 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=84.5
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
++...+|..|+..|.+++.++|..+..|.+.+.+|++..+|+.+....+++++++|+....++.+|.+......+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 008818 304 CFQDLILK 311 (552)
Q Consensus 304 ~~~~al~~ 311 (552)
.++++..+
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 99999765
No 214
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.27 E-value=0.00059 Score=67.46 Aligned_cols=345 Identities=14% Similarity=0.148 Sum_probs=177.4
Q ss_pred hhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHc
Q 008818 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA-HAHFLLGLMYQRL 170 (552)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~-~~~~~lg~~~~~~ 170 (552)
..+.++-+.|+.|..+ ..|++|++++.+-+ ...++++.++-+| |... ..--..|.-+...
T Consensus 659 ik~elydkagdlfeki-~d~dkale~fkkgd-----------af~kaielarfaf-------p~evv~lee~wg~hl~~~ 719 (1636)
T KOG3616|consen 659 IKGELYDKAGDLFEKI-HDFDKALECFKKGD-----------AFGKAIELARFAF-------PEEVVKLEEAWGDHLEQI 719 (1636)
T ss_pred HhhHHHHhhhhHHHHh-hCHHHHHHHHHccc-----------HHHHHHHHHHhhC-------cHHHhhHHHHHhHHHHHH
Confidence 4677888999999997 99999999854321 1233444444433 3222 2334457778888
Q ss_pred CCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHH
Q 008818 171 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVV 250 (552)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 250 (552)
|+++.|+..|-.+-.+... +.+ .+....+.+|+..++..-..... ...
T Consensus 720 ~q~daainhfiea~~~~ka-------------iea------------------ai~akew~kai~ildniqdqk~~-s~y 767 (1636)
T KOG3616|consen 720 GQLDAAINHFIEANCLIKA-------------IEA------------------AIGAKEWKKAISILDNIQDQKTA-SGY 767 (1636)
T ss_pred HhHHHHHHHHHHhhhHHHH-------------HHH------------------HhhhhhhhhhHhHHHHhhhhccc-ccc
Confidence 9999999988776433100 000 12334556666666654432221 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHh
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-LINYAALLLCK 329 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~ 329 (552)
|-.++.-|...|+|+-|.+.|.++- ....-..+|.+.|+|++|.+.-.++.. |..... +...+.-+-.
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedlde- 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDE- 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHh-
Confidence 4456666777777777777776542 222334456667777777666655532 322221 1111111110
Q ss_pred hcccccccccccccchhHHHhcCHHHHHHHHHHH------H----hcCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 330 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAA------L----KADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------l----~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
.+.+...-+.|...|..+.|+..|.+. + +..|+ -...+..+|.-|...|+...|...|-++-
T Consensus 837 -------hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 837 -------HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred -------hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 011111112222334444444444432 1 12333 24566778888888888888888876654
Q ss_pred hhCCCCcchHHHHHHHHHHhHhh--------ccCchHHHhHH----HHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhh
Q 008818 399 KLEPNCMSTRYAVAVSRIKDAER--------SQEPTEQLSWA----GNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 466 (552)
Q Consensus 399 ~~~p~~~~~~~~la~~~l~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (552)
..... .....+.....++.+ ..+..-.+.|+ +....+.+.... .+..-.......+-
T Consensus 910 d~kaa---vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~g--------ll~~~id~a~d~~a 978 (1636)
T KOG3616|consen 910 DFKAA---VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHG--------LLEAAIDFAADNCA 978 (1636)
T ss_pred hHHHH---HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhh--------hHHHHhhhhhcccc
Confidence 32110 000000001111000 00000011111 011111111100 01111112233445
Q ss_pred HHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Q 008818 467 VAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 516 (552)
Q Consensus 467 ~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (552)
++-|+..-+-+.+......+..++..+...|++++|-+.|-.+++++.-+
T Consensus 979 fd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 979 FDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 56666666666667777888899999999999999999999999998654
No 215
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.27 E-value=4.1e-05 Score=70.58 Aligned_cols=135 Identities=18% Similarity=0.250 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ-SGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 328 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 328 (552)
+|..+.....+.+..+.|..+|.+|.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~- 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI- 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 577777888888889999999999997767778899999999777 566666999999999999999999998888887
Q ss_pred hhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 329 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
..++.+.|..+|++++..-|... .+|......-...|+.+...++.+++.+..|+..
T Consensus 82 --------------------~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 --------------------KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp --------------------HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred --------------------HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88999999999999998866644 6888888889999999999999999999988854
No 216
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.26 E-value=1.3e-06 Score=81.96 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=97.5
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
.+..+.|+.|+..|.++++++|+.+..+-+++.++.+.+++..|+..+.++++.+|....+|+..|.++..++++.+|+.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
.|+....+.|+++.+...+..+-.
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999988766655543
No 217
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.26 E-value=0.0051 Score=59.11 Aligned_cols=396 Identities=11% Similarity=0.035 Sum_probs=205.8
Q ss_pred hhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcc
Q 008818 112 DSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE 191 (552)
Q Consensus 112 ~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (552)
++-|+.+|.+...|..+-.- .....+++.+..+++.+...|..+.+|.......+...+|+.-..+|.++|..-
T Consensus 10 ~~rie~nP~di~sw~~lire--~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIRE--AQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHH--HccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----
Confidence 56678888888888864332 334489999999999999999999999999999999999999999999998751
Q ss_pred ccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHH---------HcC
Q 008818 192 ADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL---------KSG 262 (552)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~~ 262 (552)
..-+++.. +. ..+-...|.. .-......+|...-..-+..++.....|...+..+. .+.
T Consensus 84 ---LnlDLW~l---Yl--~YVR~~~~~~----~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q 151 (656)
T KOG1914|consen 84 ---LNLDLWKL---YL--SYVRETKGKL----FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ 151 (656)
T ss_pred ---hhHhHHHH---HH--HHHHHHccCc----chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH
Confidence 12222221 11 1111111111 000011122333333333356666666766655432 334
Q ss_pred CHHHHHHHHHHHHhcCCCCHH-HHHHH-------------HHHHHHcCCHHHHHHHHHHHHhh-------CCC----C--
Q 008818 263 RLQSSISVLSSLLAVDPNNCD-CIGNL-------------GIAYFQSGDMEQSAKCFQDLILK-------DQN----H-- 315 (552)
Q Consensus 263 ~~~~A~~~~~~al~~~p~~~~-~~~~l-------------a~~~~~~g~~~~A~~~~~~al~~-------~p~----~-- 315 (552)
+.+.-...|++++..--.+.+ .|... -.+-.....|..|...+++...+ +|. .
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 667778889999875333322 22111 11222334566666666665432 111 1
Q ss_pred -----HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----
Q 008818 316 -----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD---- 386 (552)
Q Consensus 316 -----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---- 386 (552)
.+.|.++...- +.+...... |.. .-..-.-.|++++..-+-.+++|+.-+..+...++
T Consensus 232 ~e~~qv~~W~n~I~wE--ksNpL~t~~------~~~-----~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~ 298 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWE--KSNPLRTLD------GTM-----LTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTE 298 (656)
T ss_pred HHHHHHHHHHHHHHHH--hcCCccccc------ccH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence 11122222111 111000000 000 01122335666666666677777766655555555
Q ss_pred ----------hHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHH
Q 008818 387 ----------HRSSGKCLEKAAKLEPNC-MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 455 (552)
Q Consensus 387 ----------~~~A~~~~~~al~~~p~~-~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (552)
.+++..+|++++...-.. ...++.++. ..+........+......+.+...... +...+|.
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~--~eE~~~~~n~~~~~~~~~~~ll~~~~~------~~tLv~~ 370 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD--YEESRYDDNKEKKVHEIYNKLLKIEDI------DLTLVYC 370 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHhcccchhhhhHHHHHHHHhhhcc------CCceehh
Confidence 577888888887643322 222222222 111111100011111111111111111 1223455
Q ss_pred hHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHH---HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 008818 456 GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESA---FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 532 (552)
Q Consensus 456 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 532 (552)
.+-..-.+..-...|...|.++-...-...+..++. -|...++..-|.+.|+--++..++.+..-+.....+..+++
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc
Confidence 555555555555566666666443222221111222 23356677777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHH
Q 008818 533 HRSSGKCLEKVLMV 546 (552)
Q Consensus 533 ~~~A~~~~~~al~l 546 (552)
-..|...|++++.-
T Consensus 451 d~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 451 DNNARALFERVLTS 464 (656)
T ss_pred chhHHHHHHHHHhc
Confidence 77777777777654
No 218
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0033 Score=59.43 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHH
Q 008818 157 AHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 234 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 234 (552)
+.++..+|..+...| +...++++++..+...| ...-.+..+..+|.++ +.-..+++.|.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~i---------s~~veart~LqLg~lL----------~~yT~N~elAk 67 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQI---------SFLVEARTHLQLGALL----------LRYTKNVELAK 67 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHHHH----------HHHhccHHHHH
Confidence 346677888888888 88999999988877632 2222334444444443 22345578888
Q ss_pred HHHHHHHhcC---cch----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 008818 235 SKLKESMQSD---TRQ----AVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNC----DCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 235 ~~~~~al~~~---p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~ 302 (552)
..++++..+. |+. .++...|+.+|.... .+..|...+++++++....+ ...+.|+.+..-..++..|+
T Consensus 68 sHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~ 147 (629)
T KOG2300|consen 68 SHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSAL 147 (629)
T ss_pred HHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHH
Confidence 8888887543 333 345667888888877 78889999999999876654 34577888888888888887
Q ss_pred HHH
Q 008818 303 KCF 305 (552)
Q Consensus 303 ~~~ 305 (552)
+.+
T Consensus 148 elL 150 (629)
T KOG2300|consen 148 ELL 150 (629)
T ss_pred HHH
Confidence 763
No 219
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.24 E-value=0.00058 Score=69.47 Aligned_cols=150 Identities=22% Similarity=0.150 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC-
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-----GRLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSG- 296 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g- 296 (552)
+....|..+++.+.+.. +..+...+|.+|..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|....
T Consensus 226 ~~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 226 GELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhhhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 34678888888887544 566777888887764 6899999999999771 1125668899999998853
Q ss_pred ----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 297 ----DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 297 ----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
+...|+.+|.++... +++.+.+.+|.++... . ...++..|.++|..+.+. .+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g---------------~---~~~d~~~A~~yy~~Aa~~--G~~~ 361 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETG---------------T---KERDYRRAFEYYSLAAKA--GHIL 361 (552)
T ss_pred CccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcC---------------C---ccccHHHHHHHHHHHHHc--CChH
Confidence 778899999999875 4667788889888731 1 235688999999999874 4688
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHhhC
Q 008818 373 IWANLANAYYL----TGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 373 ~~~~la~~~~~----~~~~~~A~~~~~~al~~~ 401 (552)
+.+.++.||.. ..+...|..+|+++.+..
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 89999999875 457899999999999987
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.23 E-value=0.00018 Score=68.30 Aligned_cols=217 Identities=15% Similarity=0.058 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccC
Q 008818 138 KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 217 (552)
Q Consensus 138 ~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 217 (552)
+.+.-.++-.++++++|+.+++|..|+.-.. .-..+|..+|+++++.... .+.....
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~----------------~lg~s~~----- 239 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEA----------------SLGKSQF----- 239 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHH----------------hhchhhh-----
Confidence 3334444455556689999999998886433 3478999999999986311 0000000
Q ss_pred CCccccccCchhHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 008818 218 DNSLDKELEPEELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYF 293 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 293 (552)
.+....+-..+..... ...+...+|.|..++|+.++|++.|+..++..|. +..++.+|..++.
T Consensus 240 -------------~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL 306 (539)
T PF04184_consen 240 -------------LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL 306 (539)
T ss_pred -------------hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence 0000001111111111 1345667999999999999999999999998774 5678999999999
Q ss_pred HcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhc---CHHHHHHHHHHHHhcCCC
Q 008818 294 QSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKECLLAALKADPK 369 (552)
Q Consensus 294 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~ 369 (552)
.++.|.++...+.+-=.+ -|+.....+.-+.+..+..++.. .+.. -.+.| .-..|++.+.++++.+|.
T Consensus 307 elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~f-s~e~-------a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 307 ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKF-SPEA-------ASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcccc-Cchh-------hhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 999999999998885433 24445444444444332111000 0000 01122 123478899999999998
Q ss_pred cHHHHHHHHH------HHHHcCChHHHHHHHHHHHh
Q 008818 370 AAHIWANLAN------AYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 370 ~~~~~~~la~------~~~~~~~~~~A~~~~~~al~ 399 (552)
-+..+..+=. -+.+.|+ .+|+.+---.+.
T Consensus 379 Vp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~ 413 (539)
T PF04184_consen 379 VPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQ 413 (539)
T ss_pred CchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHH
Confidence 6665443321 2334444 556655444443
No 221
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.7e-06 Score=71.17 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 330 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 330 (552)
+..-|+.++.-.+|..|+.+|.++|.++|..+..+.+.+.+++++.+|+.+.....+++++.|+...+.+.+|..+.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l--- 89 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL--- 89 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH---
Confidence 34457788888999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccccccccchhHHHhcCHHHHHHHHHHHHhc
Q 008818 331 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 366 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 366 (552)
....|++|+..+.++..+
T Consensus 90 ------------------~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 ------------------QSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred ------------------hhccccHHHHHHHHHHHH
Confidence 888999999999999665
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00046 Score=59.75 Aligned_cols=228 Identities=14% Similarity=0.112 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 246 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------------------CDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 246 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
++...|...-.++.++..+++|...+...-.++..+ .......|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 345577777778888888888887776554443211 1123344666677787777766554
Q ss_pred HHHhhC------------CC-CHHHHH-HHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC-CCcH
Q 008818 307 DLILKD------------QN-HPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAA 371 (552)
Q Consensus 307 ~al~~~------------p~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 371 (552)
.....- |. ....|. .++.+.. .+..++.-.|.|.-.+..+.+.++.+ |..+
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy--------------~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p 212 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMY--------------SMANCLLGMKEYVLSVDAYHSVIKYYPEQEP 212 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH--------------HHHHHHhcchhhhhhHHHHHHHHHhCCcccH
Confidence 443210 00 011111 1111111 12233334555555555555555555 3355
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCH
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 451 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (552)
.....||.+-++.|+.+.|..+|+++-+.. ..+... ...-
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~------------------------------------~kL~~~----q~~~ 252 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVT------------------------------------QKLDGL----QGKI 252 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHH------------------------------------hhhhcc----chhH
Confidence 555556666666666555555555443111 001111 1122
Q ss_pred HHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc---HHHHHHHHHH
Q 008818 452 IAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANA 526 (552)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~ 526 (552)
.+..+.+.++.-.+++..|...+.+.+. +.+..+..+.|.|+.-.|+..+|++..+.+++..|.. ....++|-.+
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 3445556666666666666666665443 3333344466666666777777777777777766652 2344445444
Q ss_pred H
Q 008818 527 Y 527 (552)
Q Consensus 527 ~ 527 (552)
|
T Consensus 333 y 333 (366)
T KOG2796|consen 333 Y 333 (366)
T ss_pred H
Confidence 4
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.17 E-value=5.2e-06 Score=51.96 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
+.++..+|.+|..+|++++|++.|+++++.+|+++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999999998875
No 224
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0001 Score=62.91 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh--ccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR--CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 234 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 234 (552)
..++...|+-++..|+|.+|...|+.|+....+ -.+.+..|.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW----------------------------------- 222 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW----------------------------------- 222 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-----------------------------------
Confidence 346778888888999999999988888765211 0111111111
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
++++......+.+++.|+...|+|-++++....++..+|.+..+++..|.+....-+..+|...|.++++++|.
T Consensus 223 ------~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 223 ------LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred ------HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 22233335578889999999999999999999999999999999999999999999999999999999999987
Q ss_pred CHHHH
Q 008818 315 HPAAL 319 (552)
Q Consensus 315 ~~~~~ 319 (552)
-..+.
T Consensus 297 lasvV 301 (329)
T KOG0545|consen 297 LASVV 301 (329)
T ss_pred hHHHH
Confidence 65543
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.11 E-value=0.00013 Score=69.11 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=117.3
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------------------
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------------------------- 280 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------------- 280 (552)
+..+...-++..++|++++|+.+.+|..|+.- ......+|..+|+++++....
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 55677888999999999999999999888762 334467777777777664110
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
...+...+|.|..++|+.++|++.++..++..|. +...+.++..+++ ..+.|.++..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL---------------------elq~Yad~q~ 316 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL---------------------ELQAYADVQA 316 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH---------------------hcCCHHHHHH
Confidence 1335678999999999999999999999988875 4456777777777 8899999998
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhhCCCCcchH
Q 008818 359 CLLAALKA-DPKAAHIWANLANAYYL-TGD---------------HRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 359 ~~~~al~~-~p~~~~~~~~la~~~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~~ 408 (552)
.+.+--++ -|..+...+..+.+-.+ .++ -..|++.+.+|++.+|.-+...
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 88886433 25556665555554332 222 1357788999999999876443
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.09 E-value=3.4e-06 Score=49.03 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=18.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 271 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 271 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555554
No 227
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00081 Score=57.22 Aligned_cols=151 Identities=9% Similarity=0.017 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C-C-CCHHHHHHHHHHHHHcCCHHHH
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----D-P-NNCDCIGNLGIAYFQSGDMEQS 301 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~-p-~~~~~~~~la~~~~~~g~~~~A 301 (552)
+.+++|.++|.++ |+.|....+|..|-..|.++-.. + . +-...|...+.+|. .++.++|
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHH
Confidence 4678888877765 34444445555555555555433 1 1 12344555555554 4599999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHh-cCHHHHHHHHHHHHhcCCC------cHHHH
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALKADPK------AAHIW 374 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~ 374 (552)
+.++++++++..+- |+.-+ .+.....+|.+|... .++++|+.+|+++-+-... .-..+
T Consensus 93 v~cL~~aieIyt~~-------Grf~~--------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~ 157 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDM-------GRFTM--------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCL 157 (288)
T ss_pred HHHHHHHHHHHHhh-------hHHHH--------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 99999998865432 22211 122233455555554 8999999999998765433 23456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 375 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 375 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
...+..-..+++|.+|+..|+++....-++....
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 6677777889999999999999988766665443
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0018 Score=55.60 Aligned_cols=203 Identities=16% Similarity=0.138 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 237 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 237 (552)
..|..-+.+|....+|++|...+.+|.+-... +..++..+..+...+.+.. +...+.++..+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEn------nrslfhAAKayEqaamLak-----------e~~klsEvvdl~ 94 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------NRSLFHAAKAYEQAAMLAK-----------ELSKLSEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHH
Confidence 46677778888899999999999999865322 2334444444444444433 334458888888
Q ss_pred HHHHhcC-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 238 KESMQSD-----TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 238 ~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
+++.... |+.+..-...+--....-++++|++.|++++.+-... .+.+...+.++.+...+++|-..+.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 8887653 3333333344444566778999999999988773322 3456677888888899988887776
Q ss_pred HHHhh----CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc----CCCcHHHHHHHH
Q 008818 307 DLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAHIWANLA 378 (552)
Q Consensus 307 ~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la 378 (552)
+-... +..+......++.++. +.-..+|..|..+++..-++ .+++.....+|-
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv-------------------~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILV-------------------YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHH-------------------HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 65432 2222222222333332 12667888899888886665 244555665555
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 008818 379 NAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 379 ~~~~~~~~~~~A~~~~~~a 397 (552)
..| ..|+.++..+.+..-
T Consensus 236 ~ay-d~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVLSSP 253 (308)
T ss_pred HHh-ccCCHHHHHHHHcCh
Confidence 544 567777776665443
No 229
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=7.5e-05 Score=63.66 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=55.9
Q ss_pred hHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 346 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
|+...|+|-++++.....+..+|.+..+++..|.++...=+..+|...|.++++++|.-.
T Consensus 239 C~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 239 CLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 334899999999999999999999999999999999999999999999999999999744
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0031 Score=54.20 Aligned_cols=151 Identities=15% Similarity=0.044 Sum_probs=78.5
Q ss_pred HhcCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhcc
Q 008818 349 QASAVNVAKECLLAALKA-----DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 423 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~ 423 (552)
....+.++..+|+++... .|+.+..-...+-=.....++++|+..|++++.+...........
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~------------ 150 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF------------ 150 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH------------
Confidence 445555565555555443 223222222333333455667788888888777655443322111
Q ss_pred CchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc------chhh--hhhhhHHHHHHh
Q 008818 424 EPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS------KMEE--CAGAGESAFLDQ 495 (552)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~~~--~~~~~la~~~~~ 495 (552)
..+...++++.....+.+|-..+.+... ..+. ..+.....+++.
T Consensus 151 ----------------------------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 151 ----------------------------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred ----------------------------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 2344455556666666666555554221 1111 223333335556
Q ss_pred hhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 008818 496 ASAVNVAKECLLAALKA----DPKAAHIWANLANAYYLTGDHRSSGKCL 540 (552)
Q Consensus 496 ~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 540 (552)
..+|..|..+++..-++ .|++..+..+|-..| ..|+.++....+
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 66888888888876664 344555555555443 456666655443
No 231
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.92 E-value=2.3e-05 Score=45.90 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 371 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 371 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999974
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.91 E-value=2.4e-05 Score=73.70 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008818 252 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 331 (552)
Q Consensus 252 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 331 (552)
-.-+...+.-+.|+.|+..|.++|+++|+++..+.+.+.++...+++..|+..+.++++.+|....+++..|....
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m---- 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM---- 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH----
Confidence 3456777888999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred ccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008818 332 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 382 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 382 (552)
..+.+.+|+..|+....+.|+++.+...+..|-.
T Consensus 84 -----------------~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 84 -----------------ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred -----------------hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 8999999999999999999999998887776644
No 233
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.90 E-value=2e-05 Score=46.16 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPN 280 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 280 (552)
+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555553
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00053 Score=63.29 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=100.7
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (552)
.+..+.|...|.++++..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+...|+.+.|...|
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3557999999999997777778999999999777 566666999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCH---HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 008818 306 QDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 373 (552)
Q Consensus 306 ~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 373 (552)
++++..-|... ..|......-. ..|+.+....+..++.+..|+....
T Consensus 94 er~i~~l~~~~~~~~iw~~~i~fE~---------------------~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 94 ERAISSLPKEKQSKKIWKKFIEFES---------------------KYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHCCTSSCHHHCHHHHHHHHHHHH---------------------HHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 99998866654 34544444433 8899999999999999988884433
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.001 Score=59.78 Aligned_cols=127 Identities=16% Similarity=0.141 Sum_probs=108.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhcc
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGS 332 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~ 332 (552)
-+.+.+..|++.+|....++.++-.|.+.-++..--.+++.+|+...-...+++++.. +++-+-.-+.-|...+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF----- 183 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF----- 183 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh-----
Confidence 4556678899999999999999999999999988889999999999999999999976 7776554444444333
Q ss_pred cccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 333 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
.+...|-|++|.+...+++++++.+..+...++.++...|++.++.+...+.-
T Consensus 184 -------------gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 184 -------------GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred -------------hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 34589999999999999999999999999999999999999999999887643
No 236
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0063 Score=52.97 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME-QSAKCFQDL 308 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a 308 (552)
..|+..-..++.++|.+..+|..+-.++..++ +..+-++++...+.-+|.+..+|...-.+....|+.. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 55566666666666666666655555544433 3455566666666666666666666666666666655 556666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC--
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG-- 385 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~-- 385 (552)
+..+..+..+|...-.++. ..+.++.-+.+..+.++.+-.+-.+|...-.+... .|
T Consensus 140 l~~DaKNYHaWshRqW~~r---------------------~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~ 198 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLR---------------------FFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVI 198 (318)
T ss_pred HhccccchhhhHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCc
Confidence 6666666666655555554 44556666666666666555555555433222111 11
Q ss_pred ---ChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 386 ---DHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 386 ---~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
..+.-+.+..+.+.+.|++..+|..+
T Consensus 199 ~~~~le~El~yt~~~I~~vP~NeSaWnYL 227 (318)
T KOG0530|consen 199 SKAELERELNYTKDKILLVPNNESAWNYL 227 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 12233445555666666666666544
No 237
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.87 E-value=3.5e-05 Score=45.10 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPN 280 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 280 (552)
+|+.+|.+++.+|++++|+++|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555544
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.85 E-value=0.0065 Score=60.43 Aligned_cols=189 Identities=15% Similarity=0.005 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHH
Q 008818 356 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 435 (552)
Q Consensus 356 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~ 435 (552)
.+-.|+-++.+=|.. ...+-.+.--.|+-+.+++.+.++.+ .++-......+.+..+.......-..+........
T Consensus 176 G~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 344555556655532 22233333356899999999999876 33322222222222111111100000002223344
Q ss_pred HHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc------chhhhhhhhHHHHHHhhhhHHHHHHHHHHH
Q 008818 436 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS------KMEECAGAGESAFLDQASAVNVAKECLLAA 509 (552)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (552)
+..++.......|+.....+..|.++...|+.++|+..+..++. +...-.++.+|.++....+|++|..+|.+.
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 55556666666778888889999999999999999999998664 222345779999999999999999999999
Q ss_pred HHhCCCc-HHHHHHHHHHHHHcCCh-------hHHHHHHHHHHHHhc
Q 008818 510 LKADPKA-AHIWANLANAYYLTGDH-------RSSGKCLEKVLMVYC 548 (552)
Q Consensus 510 l~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~l~~ 548 (552)
.+.+.-. ....|..|.|+...|+. ++|.++|+++-.+..
T Consensus 332 ~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 332 LKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9986653 44557788999999999 888888887776654
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=4.4e-05 Score=44.68 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 371 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 371 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
+.+|+.+|.+++.+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999975
No 240
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.016 Score=59.97 Aligned_cols=231 Identities=16% Similarity=0.112 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 229 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 229 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
+++.|.++.+++ +.+.+|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-++++.-+
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 335555554443 45789999999999999999999999764 67788888999999999999999988777
Q ss_pred HhhCCC-CHHHHHHHHHHHHHhhcc--------ccc-----------------------ccccccccchhHHHhcCHHHH
Q 008818 309 ILKDQN-HPAALINYAALLLCKYGS--------VLA-----------------------GAGANTGEGACLDQASAVNVA 356 (552)
Q Consensus 309 l~~~p~-~~~~~~~l~~~~~~~~~~--------~~~-----------------------~~~~~~~~~~~~~~~~~~~~A 356 (552)
.+.... ..+.-..++..-..+... ..+ ....+..++..+..+|+|..|
T Consensus 1160 Rkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1160 RKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 653211 111111111111111000 000 122334467777788888888
Q ss_pred HHHHHHHHhcC-----------CC--------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 357 KECLLAALKAD-----------PK--------------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 357 ~~~~~~al~~~-----------p~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
++..+++-... .. +++-+-.+...|...|-+++-+..++.++-+...+......+
T Consensus 1240 VD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1240 VDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred HHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 88777653321 00 233445666778888999999999999988877666555555
Q ss_pred HHHHHHhH-hhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHH
Q 008818 412 AVSRIKDA-ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 475 (552)
Q Consensus 412 a~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 475 (552)
+..+-+-. .+..+. -.+-|..-.+-++++... ....|..+..+|.+-..|+.|.....
T Consensus 1320 aiLYskykp~km~EH-l~LFwsRvNipKviRA~e-----qahlW~ElvfLY~~y~eyDNAa~tmm 1378 (1666)
T KOG0985|consen 1320 AILYSKYKPEKMMEH-LKLFWSRVNIPKVIRAAE-----QAHLWSELVFLYDKYEEYDNAALTMM 1378 (1666)
T ss_pred HHHHHhcCHHHHHHH-HHHHHHhcchHHHHHHHH-----HHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 55332210 000001 112222223333333322 24678888888888888887765544
No 241
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.80 E-value=0.0043 Score=60.10 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=80.4
Q ss_pred HHHHhchhhHHHHHHHHHhhhcchhh---hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChh
Q 008818 458 AAVQKTHHEVAAAFETEENELSKMEE---CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 534 (552)
Q Consensus 458 ~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 534 (552)
|......|+...|+.++..++...+. ....+||.++...|...+|-..+.+++.++...+-.++.+|.+|..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 44456788999999999998775544 335689999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 008818 535 SSGKCLEKVLMVYCS 549 (552)
Q Consensus 535 ~A~~~~~~al~l~~~ 549 (552)
.|++.|+.|+++-+.
T Consensus 694 ~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 694 GALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999987654
No 242
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.79 E-value=0.035 Score=52.50 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 237 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 237 (552)
-.+...|.++.+++++.+|...|.+..+...+ .|.... -.++.++..- .+-.++.+.-...+
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~------~~f~lk-eEvl~griln-----------Affl~nld~Me~~l 68 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKES------SPFLLK-EEVLGGRILN-----------AFFLNNLDLMEKQL 68 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhc------chHHHH-HHHHhhHHHH-----------HHHHhhHHHHHHHH
Confidence 35667799999999999999999998875322 111111 0111111100 11223334444444
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------------HH--HHHHHHHHHHHcCCHHHHH
Q 008818 238 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------------CD--CIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 238 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~--~~~~la~~~~~~g~~~~A~ 302 (552)
...-+..|..+......|...++.+++.+|++.+..-...-... .+ .-...+.++...|++.++.
T Consensus 69 ~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 69 MELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 44445567777777788888899999999988876554431111 11 1234577888899999998
Q ss_pred HHHHHHHh
Q 008818 303 KCFQDLIL 310 (552)
Q Consensus 303 ~~~~~al~ 310 (552)
..+++.+.
T Consensus 149 ~iLn~i~~ 156 (549)
T PF07079_consen 149 AILNRIIE 156 (549)
T ss_pred HHHHHHHH
Confidence 88888774
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0014 Score=58.28 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=26.7
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 273 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 273 (552)
..|++.+|...|..++...|++..+...++.+|...|+.+.|...+..
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 445555555555555555555555555555555555555555555443
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.75 E-value=0.0097 Score=57.52 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=48.8
Q ss_pred hhhhhHHHHHHhh------hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh-----------------hHHHHHH
Q 008818 484 CAGAGESAFLDQA------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-----------------RSSGKCL 540 (552)
Q Consensus 484 ~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------~~A~~~~ 540 (552)
.+++.+|...... +.+++++..|.++++.+|+...+|+.+|..+...-+. ..|+..|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 4455566666666 7889999999999999999999999999987554221 2377777
Q ss_pred HHHHHHhcc
Q 008818 541 EKVLMVYCS 549 (552)
Q Consensus 541 ~~al~l~~~ 549 (552)
-+++.+.+.
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 777766543
No 245
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.74 E-value=0.078 Score=55.18 Aligned_cols=297 Identities=16% Similarity=0.050 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHhcC---c-chHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHcCCHH
Q 008818 231 EEILSKLKESMQSD---T-RQAVVWNTLGLILL-KSGRLQSSISVLSSLLAVDPN--NC----DCIGNLGIAYFQSGDME 299 (552)
Q Consensus 231 ~~A~~~~~~al~~~---p-~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~ 299 (552)
..|+.+++-+++.. | ..+.+++.+|.++. ...+++.|..++.+++.+... .. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 56777887777422 2 23568888999988 789999999999999887643 22 34567788888888877
Q ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC--CcHH----
Q 008818 300 QSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAH---- 372 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~---- 372 (552)
|+..+++.++...+. ...|...-..+. .......+++..|++.++....... .++.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~----------------~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLK----------------IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHH----------------HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 999999999765441 112222222221 0011133799999999999887652 3333
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCc----chHHHHHHH--HHH--hHhhccCchHHHhHHHHHHHH
Q 008818 373 IWANLANAYYLTGDHRSSGKCLEKAAKL------EPNCM----STRYAVAVS--RIK--DAERSQEPTEQLSWAGNEMAS 438 (552)
Q Consensus 373 ~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~----~~~~~la~~--~l~--~~~~~~~~~~~~~~~~~~~~~ 438 (552)
+....+.++...+..+++++..+++... +++.. .++..+... .+. +..........+....+....
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 3334466777788888898888887442 22221 111111110 010 101111111222222222211
Q ss_pred Hh--hc---C--CCCC-----------C--------C--CHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhh-------
Q 008818 439 IL--RE---G--DPVQ-----------I--------E--PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------- 483 (552)
Q Consensus 439 ~~--~~---~--~~~~-----------~--------~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------- 483 (552)
.. .. . .++. + . ...+|..-|......+..++|.+.+.+++.....
T Consensus 261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~ 340 (608)
T PF10345_consen 261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS 340 (608)
T ss_pred CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence 11 00 0 0000 0 0 0112233334444445444555555443321000
Q ss_pred ---------------------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhC---CC------cHHHHHHHHHHHHHcCCh
Q 008818 484 ---------------------CAGAGESAFLDQASAVNVAKECLLAALKAD---PK------AAHIWANLANAYYLTGDH 533 (552)
Q Consensus 484 ---------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~lg~~~~~~g~~ 533 (552)
...+.++.+.+-.+++..|...++.+.... |. .+..++..|..+...|+.
T Consensus 341 ~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l 420 (608)
T PF10345_consen 341 APSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDL 420 (608)
T ss_pred CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCH
Confidence 114466667778889999998888777642 22 478899999999999999
Q ss_pred hHHHHHHHHHH
Q 008818 534 RSSGKCLEKVL 544 (552)
Q Consensus 534 ~~A~~~~~~al 544 (552)
+.|+.+|.+..
T Consensus 421 ~~A~~~y~~~~ 431 (608)
T PF10345_consen 421 EAALYQYQKPR 431 (608)
T ss_pred HHHHHHHhhhH
Confidence 99999998544
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.72 E-value=0.0051 Score=57.84 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=112.4
Q ss_pred ccCchhHHHHHHHHHHHHhc----CcchHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHc
Q 008818 224 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLK---SGRLQSSISVLSS-LLAVDPNNCDCIGNLGIAYFQS 295 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~ 295 (552)
|....+|+.-++..+..-.. -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+..+|.+|-..
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 34556778888888777655 45566778889999998 9999999999999 4555677899999999998542
Q ss_pred ---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH-h
Q 008818 296 ---------GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL-K 365 (552)
Q Consensus 296 ---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~ 365 (552)
...++|+.+|.++.+++|+..... +++.++...+... .......+-...+...+ +
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI-N~AtLL~~~g~~~--------------~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI-NAATLLMLAGHDF--------------ETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHcCCcc--------------cchHHHHHHHHHHHHHHHh
Confidence 347899999999999997654443 4555554221100 00000011010111111 1
Q ss_pred ----cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 366 ----ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 366 ----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
..-.+...+-.++.+..-.|++++|...+++++.+.|..
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 122345666778888899999999999999999997654
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.71 E-value=0.041 Score=50.87 Aligned_cols=247 Identities=15% Similarity=0.078 Sum_probs=143.9
Q ss_pred chhHHhHHHHHHHHHHHHHhC----CCC----hHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHhh-ccccccchhH-HH
Q 008818 133 SSREEKVSSLKTGLVHVARKM----PKN----AHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLR-CEADIARPEL-LS 201 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~-~~ 201 (552)
...+++++.|...+.++-... |+. +..++..|......+ ++++|..+++++.++... .......++. .-
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 345667777777777765433 332 336778888888899 999999999999998543 2222223333 22
Q ss_pred HHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C
Q 008818 202 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-N 280 (552)
Q Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~ 280 (552)
...++..++.++...+.. ...++|....+.+-...|+.+..+...-.++.+.++.+.+.+.+.+++..-+ .
T Consensus 83 r~~iL~~La~~~l~~~~~--------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~ 154 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY--------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS 154 (278)
T ss_pred HHHHHHHHHHHHHcCCCh--------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc
Confidence 345556666666555444 5667788888888888888888886666666678999999999999988644 1
Q ss_pred CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 281 NCDCIGNLGIA-YFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 281 ~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
....-..+..+ .........|...+...+.. .|.... +.....+..-..... ..-....+..+...
T Consensus 155 e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~----------~~~~~~~~~i~~l~ 223 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQ----------SKDLSSSEKIESLE 223 (278)
T ss_pred cchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcC----------CccccchhHHHHHH
Confidence 12222222222 11223456777888777743 333322 333332222110000 00000111133333
Q ss_pred HHHHHHHhc--CCCcH-------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 358 ECLLAALKA--DPKAA-------HIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 358 ~~~~~al~~--~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
..+....+. .|-.. ..+-+.|...++.++|++|..+|+-++
T Consensus 224 ~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 224 ELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333322211 11111 234466888999999999999999776
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.0034 Score=51.72 Aligned_cols=114 Identities=20% Similarity=0.194 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHH
Q 008818 162 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 241 (552)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 241 (552)
..|......|+...++..+++++.+...+- +..... ..-.......++..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~---------------------l~~~~~--------~~W~~~~r~~l~~~- 60 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDF---------------------LPDLDD--------EEWVEPERERLREL- 60 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SST---------------------TGGGTT--------STTHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCC---------------------CCCCCc--------cHHHHHHHHHHHHH-
Confidence 345566677889999999999998742210 000000 01112233333332
Q ss_pred hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 242 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 242 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
...+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++..
T Consensus 61 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 -----YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999999999999999998764
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.65 E-value=0.058 Score=50.98 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 356 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 356 (552)
.++...++-..|....+|+.-++..+..-.+ -++.......++.++..+ .+.|+.++|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr------------------n~~gdre~A 201 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR------------------NKPGDREKA 201 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc------------------ccCCCHHHH
Confidence 3566778888899999999999988876655 344555666667666621 038999999
Q ss_pred HHHHHH-HHhcCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCCCcch
Q 008818 357 KECLLA-ALKADPKAAHIWANLANAYYLT---------GDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 357 ~~~~~~-al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
+..+.. .....+.+++.+..+|.+|-.. ...++|+..|.++.+++|+....
T Consensus 202 l~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G 262 (374)
T PF13281_consen 202 LQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG 262 (374)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence 999999 4455667899999999998542 24689999999999999765433
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.65 E-value=0.0014 Score=65.11 Aligned_cols=136 Identities=20% Similarity=0.170 Sum_probs=96.6
Q ss_pred HcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchH
Q 008818 169 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA 248 (552)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 248 (552)
-.|+-+.++..+.++.+. .+ . ...+..+.-..+.... ..-.+.. . ...+.+.|.+.+....+..|+.+
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~----i-~~~la~L~LL~y~~~~-~~~~~~~----~-~~~~~~~a~~lL~~~~~~yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-EN----I-RSPLAALVLLWYHLVV-PSFLGID----G-EDVPLEEAEELLEEMLKRYPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CC----c-chHHHHHHHHHHHHHH-HHHcCCc----c-cCCCHHHHHHHHHHHHHhCCCcH
Confidence 348889999999988763 11 0 1111111111111111 0111110 0 34567999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 316 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 316 (552)
-.++..|.++...|+.++|++.|++++...... .-+++.+|.++..+++|++|..+|.+..+.+.-..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk 339 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK 339 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH
Confidence 999999999999999999999999998643332 34688999999999999999999999998655433
No 251
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.62 E-value=1.8e-05 Score=70.97 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=85.2
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
+..|.++.|++.|..++.++|..+..+..++.++.+++++..|+..|..+++++|+...-+-..|.+...+|+|++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 008818 305 FQDLILKDQN 314 (552)
Q Consensus 305 ~~~al~~~p~ 314 (552)
+..+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 9999987644
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0099 Score=53.06 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHH-HHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA--LIN-YAA 324 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~-l~~ 324 (552)
.+.-+.-+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+... |..... +.. .+.
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~ 209 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHH
Confidence 3445566777889999999999999999999999999999999999999999998877653 322211 111 111
Q ss_pred HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 325 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
+-+ +.+.....+ ...+++.+..+|++..+.+.+|..+...|++++|.+.+-..+..+.+.
T Consensus 210 i~l-------------------l~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 210 IEL-------------------LEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHH-------------------HHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 111 012222222 234566677899999999999999999999999999999999887654
Q ss_pred c
Q 008818 405 M 405 (552)
Q Consensus 405 ~ 405 (552)
.
T Consensus 270 ~ 270 (304)
T COG3118 270 E 270 (304)
T ss_pred c
Confidence 3
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.60 E-value=0.068 Score=50.53 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=25.0
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 150 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 150 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
++.+|++...|+.|..-|-.+|.+++-.+.|++...-
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p 71 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP 71 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 3456777777777777777777777777777766543
No 254
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0009 Score=60.07 Aligned_cols=101 Identities=18% Similarity=0.112 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 323 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 323 (552)
+.-+..-|+-|++..+|..|+..|.+.|+..-. +...|.+.+.+...+|+|..|+....+++.++|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445556688888888888888888888876433 3456788888888888888888888888888888888887777
Q ss_pred HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 324 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
.+++ .+.++.+|+.+++..+.++.+
T Consensus 161 kc~~---------------------eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLL---------------------ELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHH---------------------HHHHHHHHHHHHhhhhhhhHH
Confidence 7776 777788888888877666544
No 255
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.56 E-value=0.11 Score=52.07 Aligned_cols=358 Identities=12% Similarity=0.078 Sum_probs=173.1
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccc
Q 008818 134 SREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (552)
...+++..+...+ ..++..|+....|..++.+....|+.--|..+|...-... ...
T Consensus 455 id~~df~ra~afl-es~~~~~da~amw~~laelale~~nl~iaercfaai~dva--------k~r--------------- 510 (1636)
T KOG3616|consen 455 IDDGDFDRATAFL-ESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVA--------KAR--------------- 510 (1636)
T ss_pred cccCchHHHHHHH-HhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH--------HHH---------------
Confidence 5667788877666 4566778888899999999999999988888887543321 000
Q ss_pred cccCCCccccccCchhHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKES-MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
.+.+-++...++ ++...+-...|.-++.+-+.-.+|.+|...|-. .+ ..+ .-.-+|
T Consensus 511 ---------------~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifle---qn--~te---~aigmy 567 (1636)
T KOG3616|consen 511 ---------------FLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLE---QN--ATE---EAIGMY 567 (1636)
T ss_pred ---------------HHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHh---cc--cHH---HHHHHH
Confidence 011112222222 222233334454555555555666666665532 11 111 111245
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc-----cccccccccchhHHHhcCHHHHHHHHHHH--Hh
Q 008818 293 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL-----AGAGANTGEGACLDQASAVNVAKECLLAA--LK 365 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--l~ 365 (552)
..+.+|++|+..-+- .-.|........+-..+...++... .+.+.-+..-..|.+.|...+|......- +.
T Consensus 568 ~~lhkwde~i~lae~--~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~ 645 (1636)
T KOG3616|consen 568 QELHKWDEAIALAEA--KGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDEELL 645 (1636)
T ss_pred HHHHhHHHHHHHHHh--cCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHHHhh
Confidence 566666666654321 1112111111111111111111100 01111112223344555555444332211 11
Q ss_pred cCCC----------cHHHHHHHHHHHHHcCChHHHHHHHHHH------Hhh----CCCCcchH---HHHHHHHHHh---H
Q 008818 366 ADPK----------AAHIWANLANAYYLTGDHRSSGKCLEKA------AKL----EPNCMSTR---YAVAVSRIKD---A 419 (552)
Q Consensus 366 ~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a------l~~----~p~~~~~~---~~la~~~l~~---~ 419 (552)
.+.+ ....|-.-|.+|.+..++++|+++|++. +++ .|...... +..-+.++++ +
T Consensus 646 ~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daa 725 (1636)
T KOG3616|consen 646 ADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAA 725 (1636)
T ss_pred ccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHH
Confidence 1111 2345666778888888899999988753 332 12111000 0000111111 1
Q ss_pred hhccCchHHHhHHH---------HHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHH
Q 008818 420 ERSQEPTEQLSWAG---------NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGES 490 (552)
Q Consensus 420 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la 490 (552)
....-....+.++. .....++...... ......|-.++..|...|+|+.|.+.|.++-.-.+ --
T Consensus 726 inhfiea~~~~kaieaai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~d------ai 798 (1636)
T KOG3616|consen 726 INHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEADLFKD------AI 798 (1636)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcchhHH------HH
Confidence 11100001111111 1111111111110 11123455677888888888888887766321111 11
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCChhHHHHHH------HHHHHHhcc
Q 008818 491 AFLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYLTGDHRSSGKCL------EKVLMVYCS 549 (552)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~------~~al~l~~~ 549 (552)
..|-+.|+|.+|.+.-++.. .|.. ...|...+.-+-..|++.+|.+.| .+|+++|..
T Consensus 799 ~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk 862 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDK 862 (1636)
T ss_pred HHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHh
Confidence 26777888888877776663 3443 345666777788999999999887 567777754
No 256
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.52 E-value=0.011 Score=55.65 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=116.7
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGR------------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
..|.+.++.+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46788899999999999998877655433 456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc-------C----C---
Q 008818 303 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-------D----P--- 368 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~----p--- 368 (552)
+-+++++..+|++...|..+....... ...-.+......|.++++. . +
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~------------------~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~ 147 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN------------------FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLP 147 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH------------------hccCcHHHHHHHHHHHHHHHHHhhccccccccchh
Confidence 999999999999999988776665521 0122355555555555542 1 0
Q ss_pred ----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008818 369 ----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 369 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 402 (552)
....+...+.......|..+.|+..++..++++=
T Consensus 148 ~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 148 ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 1234566777788899999999999999999864
No 257
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00081 Score=60.35 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA----ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
+.-+..-|.-|+...+|..|+..|.+.|+..-.++. .|.+.+.+.+ ..|+|..|+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~---------------------~l~NyRs~l 139 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL---------------------YLGNYRSAL 139 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH---------------------HHHHHHHHH
Confidence 445667799999999999999999999988655544 3555555555 899999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 358 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
..+.+++..+|.+..+++.-|.|++.+.++.+|..+++..+.++.+..
T Consensus 140 ~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 140 NDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999999999999999999999999999999999999999887765543
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.49 E-value=0.097 Score=50.53 Aligned_cols=117 Identities=18% Similarity=0.148 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHH
Q 008818 280 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 355 (552)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (552)
.....|...+.+....|.++.|...+.++...++. .+...+..+.+++ ..|+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw---------------------~~g~~~~ 202 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW---------------------AQGEQEE 202 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH---------------------HcCCHHH
Confidence 44566777777777777777777777776664421 3344445555555 6666666
Q ss_pred HHHHHHHHHhc---C-------------------------------CCcHHHHHHHHHHHHHc------CChHHHHHHHH
Q 008818 356 AKECLLAALKA---D-------------------------------PKAAHIWANLANAYYLT------GDHRSSGKCLE 395 (552)
Q Consensus 356 A~~~~~~al~~---~-------------------------------p~~~~~~~~la~~~~~~------~~~~~A~~~~~ 395 (552)
|+..++..+.. . .....++..+|...... +..++++..|+
T Consensus 203 Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~ 282 (352)
T PF02259_consen 203 AIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYK 282 (352)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 66666655551 0 01245667777777777 88899999999
Q ss_pred HHHhhCCCCcchHHHHHHHHHH
Q 008818 396 KAAKLEPNCMSTRYAVAVSRIK 417 (552)
Q Consensus 396 ~al~~~p~~~~~~~~la~~~l~ 417 (552)
++++.+|+...+++..+.....
T Consensus 283 ~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 283 EATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHHhChhHHHHHHHHHHHHHH
Confidence 9999999999888887775443
No 259
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.025 Score=53.76 Aligned_cols=212 Identities=18% Similarity=0.134 Sum_probs=135.6
Q ss_pred HcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHh--hhhcccccccCCCccccccCchhHHHHHHHHHHHHh---c
Q 008818 169 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH--HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ---S 243 (552)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~---~ 243 (552)
..|-+++|.++-++++....+-..............+. .....+ .+-.|++.+|++....+.+ .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c-----------~lv~~~~~~al~~i~dm~~w~~r 355 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMC-----------RLVRGDYVEALEEIVDMKNWCTR 355 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH-----------HHHhCCHHHHHHHHHHHHHHHHh
Confidence 34668888888888887633322222111111111111 111111 2345777888887777654 3
Q ss_pred Ccc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008818 244 DTR-------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-N--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 244 ~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 313 (552)
.|. .+..++.+|......+.++.|...|..+.+.-.. + .-+-.++|.+|.+.|+-+.--+.++..-..+.
T Consensus 356 ~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt 435 (629)
T KOG2300|consen 356 FPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNT 435 (629)
T ss_pred CCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCC
Confidence 444 3567788899889999999999999999887432 2 34557889999998886665555544332222
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCh
Q 008818 314 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDH 387 (552)
Q Consensus 314 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~ 387 (552)
.........+.+++ ..|......+++.+|...+.+.++.... ..-.+..||.+....|+.
T Consensus 436 ~s~ssq~l~a~~~~--------------v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~ 501 (629)
T KOG2300|consen 436 NSLSSQRLEASILY--------------VYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNT 501 (629)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 22222233333333 2355555899999999999999987522 234567889999999999
Q ss_pred HHHHHHHHHHHhhCCCCc
Q 008818 388 RSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 388 ~~A~~~~~~al~~~p~~~ 405 (552)
.++.+..+-++++...-+
T Consensus 502 ~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 502 VESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHhccchHHHHHhcCC
Confidence 999999998887654433
No 260
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.46 E-value=0.00014 Score=65.44 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=82.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccccc
Q 008818 258 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 337 (552)
Q Consensus 258 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 337 (552)
.+..|.+++|++.|..+|.++|.....+...+.++..+++...|++.+..++.++|+....+-..+....
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r---------- 193 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER---------- 193 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH----------
Confidence 3456889999999999999999999999999999999999999999999999999999888777777666
Q ss_pred ccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 338 GANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
.+|++.+|...+..+.+++-+
T Consensus 194 -----------llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 -----------LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred -----------HhhchHHHHHHHHHHHhcccc
Confidence 889999999999999988654
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.015 Score=48.52 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 008818 232 EILSKLKESMQSDTRQA---VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 305 (552)
+.+...++....++... -+-..++..+...|++++|+..++.++....+. .-+-.+|+.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444445555554332 245568888999999999999999988653332 345678899999999999999887
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 306 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 306 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
...-. ..|..+..-+ .|.++...|+-.+|+..|.+++...++
T Consensus 150 ~t~~~------~~w~~~~~el----------------rGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKE------ESWAAIVAEL----------------RGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccc------ccHHHHHHHH----------------hhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 65432 1222221111 244555888889999999998887644
No 262
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.44 E-value=0.19 Score=51.93 Aligned_cols=110 Identities=10% Similarity=-0.031 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
++......++......++.+|..+..++...-+. ....-..++...- -.|.+....|++++|++
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--------------L~a~val~~~~~e~a~~ 479 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--------------LRAQVALNRGDPEEAED 479 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--------------HHHHHHHhcCCHHHHHH
Confidence 4566677788888888888888888877654332 1111111111110 01334448899999999
Q ss_pred HHHHHHhcCCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 359 CLLAALKADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 359 ~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
..+.++..-|. ...++..+|.+..-.|++++|..+.+.+.++....
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 99999988766 35678889999999999999999999998875543
No 263
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.42 E-value=0.038 Score=51.70 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhcchhhhhhhhHHHHHHh----hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC------------
Q 008818 468 AAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG------------ 531 (552)
Q Consensus 468 ~~A~~~~~~~l~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------ 531 (552)
..|+..|.++.......+.+.+|.+|.. ..++.+|..+|.++-+... ..+++.++ ++...|
T Consensus 172 ~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 172 KKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccc
Confidence 4566666666666677777788877754 3478999999999998876 88888888 666666
Q ss_pred ---ChhHHHHHHHHHHHHh
Q 008818 532 ---DHRSSGKCLEKVLMVY 547 (552)
Q Consensus 532 ---~~~~A~~~~~~al~l~ 547 (552)
+...|...+.++-...
T Consensus 249 ~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 249 KEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCCCHHHHHHHHHHHHHcC
Confidence 7777888887765543
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.40 E-value=0.0003 Score=41.02 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578899999999999999999999999998853
No 265
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.39 E-value=0.0073 Score=49.73 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=69.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNN----------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
.|......++...++..+++++.+.... ..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3555566677788888888887763211 235567788889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 312 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 312 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
+|.+..++..+..++. ..|+..+|+..|++..+
T Consensus 92 dP~~E~~~~~lm~~~~---------------------~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALA---------------------AQGRRAEALRVYERYRR 124 (146)
T ss_dssp STT-HHHHHHHHHHHH---------------------HTT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HCcCHHHHHHHHHHHHH
Confidence 9999999999999888 89999999999987754
No 266
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.39 E-value=0.00029 Score=41.11 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDP 279 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 279 (552)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555444
No 267
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.37 E-value=0.027 Score=53.75 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=88.6
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCcccccc
Q 008818 146 LVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 225 (552)
Q Consensus 146 l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (552)
+...++.+|-+.+++..++.++..+|++..|.+++++|+-..... ..+.+.. ...-...|.. .+
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~----~~~~F~~--------~~~~~~~g~~----rL 92 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA----FHPSFSP--------FRSNLTSGNC----RL 92 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----HHHHhhh--------hhcccccCcc----cc
Confidence 334556899999999999999999999999999999999763110 0011100 0000001111 00
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHH-HHHHHHHHcCCHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NCDCIG-NLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~-~la~~~~~~g~~~~A~~ 303 (552)
.-... .+.....+++.....+.+.|-+..|.++.+-.+.++|. ++-... .+-....+.++++--+.
T Consensus 93 ~~~~~------------eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~ 160 (360)
T PF04910_consen 93 DYRRP------------ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID 160 (360)
T ss_pred CCccc------------cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH
Confidence 00000 01122345667788889999999999999999999998 765444 44444467788887787
Q ss_pred HHHHHHh
Q 008818 304 CFQDLIL 310 (552)
Q Consensus 304 ~~~~al~ 310 (552)
.++....
T Consensus 161 ~~~~~~~ 167 (360)
T PF04910_consen 161 FSESPLA 167 (360)
T ss_pred HHHhHhh
Confidence 7776554
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.34 E-value=0.00048 Score=40.70 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 519 IWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 519 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
+|.+||.+|...|++++|+++|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467888888888888888888888876654
No 269
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.093 Score=45.99 Aligned_cols=154 Identities=15% Similarity=0.165 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 230 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ-SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
+.+-++++...++.+|.+..+|..+-.+....|++. .-++..+.++..+..+..+|...-.+....+.++.-+.+..+.
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356677888888899999999999999999999888 8899999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC--
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG-- 385 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~-- 385 (552)
++.+-.+-.+|...-.+..... | ....-..+.-+.+..+.+...|++..+|..|..++.. .|
T Consensus 174 le~Di~NNSAWN~Ryfvi~~~~-------------~--~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~ 238 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQRYFVITNTK-------------G--VISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLS 238 (318)
T ss_pred HHHhhhccchhheeeEEEEecc-------------C--CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCc
Confidence 9988777777654322221000 0 0011234556778888999999999999999888876 44
Q ss_pred ChHHHHHHHHHHH
Q 008818 386 DHRSSGKCLEKAA 398 (552)
Q Consensus 386 ~~~~A~~~~~~al 398 (552)
.+.+-.......+
T Consensus 239 s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 239 SDSKVVSFVENLY 251 (318)
T ss_pred CCchHHHHHHHHh
Confidence 2344444444444
No 270
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.30 E-value=0.00037 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 519 IWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 519 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
+++.+|.++...|++++|+..|+++++.+|.|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 55666666666666666666666666666643
No 271
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.27 E-value=0.016 Score=55.33 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=111.7
Q ss_pred HHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------C------------CCCH---HHHHHHH
Q 008818 239 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------D------------PNNC---DCIGNLG 289 (552)
Q Consensus 239 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~------------p~~~---~~~~~la 289 (552)
..++.+|-+.+++..++.++..+|++..|.+..++|+-. + ++|. .+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999999998888532 1 1222 2556677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC
Q 008818 290 IAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 368 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 368 (552)
..+.+.|-+..|.++.+-.+.++|. ++-........+. .+.++++--++.++.......
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A--------------------Lrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA--------------------LRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH--------------------HhcCCHHHHHHHHHhHhhhhh
Confidence 8888999999999999999999999 6655444444443 267778777777776555211
Q ss_pred -----CcHHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHhhCCCC
Q 008818 369 -----KAAHIWANLANAYYLTGDH---------------RSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 369 -----~~~~~~~~la~~~~~~~~~---------------~~A~~~~~~al~~~p~~ 404 (552)
.-+..-+.++.+++..++- +.|...+.+|+...|.-
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 1345677888888888888 89999999999998853
No 272
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.27 E-value=0.31 Score=50.51 Aligned_cols=214 Identities=16% Similarity=0.130 Sum_probs=133.2
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
++..-...+.......++.+|.....++....+.+... ...+......+..+.. .+..|++++|++
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~-~~~~l~ae~~aL~a~v-------------al~~~~~e~a~~ 479 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS-RQGDLLAEFQALRAQV-------------ALNRGDPEEAED 479 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc-chhhHHHHHHHHHHHH-------------HHhcCCHHHHHH
Confidence 44555666777788899999999999988776543221 1222222222222222 335677899999
Q ss_pred HHHHHHhcCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C--HHHHHHHHHHHHHcCC--HHHHH
Q 008818 236 KLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----N--CDCIGNLGIAYFQSGD--MEQSA 302 (552)
Q Consensus 236 ~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~--~~~A~ 302 (552)
..+.++..-|.+ ..++..+|.+..-.|++++|..+...+.++... . ..+....+.++..+|+ +.+..
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~ 559 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE 559 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999887754 446778899999999999999999988877322 2 2334555778888883 33333
Q ss_pred HHHHHHH----hhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc----CCCc--HH
Q 008818 303 KCFQDLI----LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKA--AH 372 (552)
Q Consensus 303 ~~~~~al----~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~--~~ 372 (552)
..|...- ...|-+.......+.++.. --+++.+.......++. .|.. ..
T Consensus 560 ~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~---------------------~~r~~~~~~ear~~~~~~~~~~~~~~~~~ 618 (894)
T COG2909 560 KAFNLIREQHLEQKPRHEFLVRIRAQLLRA---------------------WLRLDLAEAEARLGIEVGSVYTPQPLLSR 618 (894)
T ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHH---------------------HHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence 3333322 2234333333334444331 11144444444444433 3332 22
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 373 -IWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 373 -~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
.++.++.+++..|+.++|...+.....+..+.
T Consensus 619 ~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 619 LALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 23589999999999999999999888765444
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.24 E-value=0.17 Score=46.86 Aligned_cols=156 Identities=14% Similarity=0.148 Sum_probs=102.9
Q ss_pred ccCchhHHHHHHHHHHHHhc----Ccch----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CC---CC------
Q 008818 224 ELEPEELEEILSKLKESMQS----DTRQ----AVVWNTLGLILLKSG-RLQSSISVLSSLLAV----DP---NN------ 281 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~----~p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p---~~------ 281 (552)
..++|+++.|..++.++-.. +|+. ...+++.|......+ +++.|...++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 34678899999999988553 4443 457778888889999 999999999999887 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 282 -CDCIGNLGIAYFQSGDME---QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 282 -~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.++. +.++.+.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~---------------------~~~~~~~~~ 141 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL---------------------KSFDEEEYE 141 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh---------------------ccCChhHHH
Confidence 346778899998888765 4555555555666777776654444444 467888888
Q ss_pred HHHHHHHhcCCC-cHHHHHHHHHH-HHHcCChHHHHHHHHHHHhh
Q 008818 358 ECLLAALKADPK-AAHIWANLANA-YYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 358 ~~~~~al~~~p~-~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~ 400 (552)
+.+.+++..-+- ....-..+..+ .........|..++...+..
T Consensus 142 ~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 142 EILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 899988876441 11111112211 11223346677777766653
No 274
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.24 E-value=0.036 Score=51.86 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-----
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSG----- 296 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g----- 296 (552)
..+..+|+..|+.+. ...++.+.+.||.+|.. ..+..+|..+|+++....-.. ..+.+.+|.+|..-.
T Consensus 90 ~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 455799999999554 45567788899999987 459999999999999875333 344888888887642
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 297 --DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 297 --~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
+...|+..|.++-... ++.+...+|.+|..-. ....++.+|..+|.++.+... ....
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~-----------------Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL-----------------GVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC-----------------CCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 2347899999888765 7788889998876321 145689999999999998766 8888
Q ss_pred HHHHHHHHHcC---------------ChHHHHHHHHHHHhhCCC
Q 008818 375 ANLANAYYLTG---------------DHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 375 ~~la~~~~~~~---------------~~~~A~~~~~~al~~~p~ 403 (552)
+.++ +++..| +...|...+.++....+.
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 8888 777666 666677777766665544
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.075 Score=53.00 Aligned_cols=240 Identities=11% Similarity=0.038 Sum_probs=137.3
Q ss_pred HHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 240 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI----------GNLGIAYFQSGDMEQSAKCFQDLI 309 (552)
Q Consensus 240 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al 309 (552)
.++.+|. +..|..++..-...-.++-|...|-+.-.. +. ...- ...+.+-..-|++++|.+.|-.+-
T Consensus 685 fiEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d 761 (1189)
T KOG2041|consen 685 FIEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD 761 (1189)
T ss_pred HHhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc
Confidence 3445554 889999999888888888888887765322 11 1111 334555566789999998885442
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCh
Q 008818 310 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDH 387 (552)
Q Consensus 310 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~ 387 (552)
+ .+ |+.-+. .+.|+|-...+.++..-.-+.+ .-.++.++|..+..+..|
T Consensus 762 r---rD------LAielr--------------------~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~W 812 (1189)
T KOG2041|consen 762 R---RD------LAIELR--------------------KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEW 812 (1189)
T ss_pred h---hh------hhHHHH--------------------HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2 11 111111 2677777777666553222222 356899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhH
Q 008818 388 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEV 467 (552)
Q Consensus 388 ~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (552)
++|.++|.+.-.... ..+.++.+-. +.+ +..... ..|++...+-.+|..+...|..
T Consensus 813 e~A~~yY~~~~~~e~-~~ecly~le~--f~~-----------------LE~la~----~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 813 EEAAKYYSYCGDTEN-QIECLYRLEL--FGE-----------------LEVLAR----TLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHhccchHh-HHHHHHHHHh--hhh-----------------HHHHHH----hcCcccchHHHHHHHHHhhchH
Confidence 999999987643321 1222222211 100 111111 1244455677788888888999
Q ss_pred HHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 008818 468 AAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 543 (552)
Q Consensus 468 ~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 543 (552)
++|.+.|-+.-.+... .. ....+++|.+|++..++- .-|.-....-..+--+...++..+|++.++++
T Consensus 869 ~qAV~a~Lr~s~pkaA--v~----tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 869 DQAVEAYLRRSLPKAA--VH----TCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHhccCcHHH--HH----HHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 9998887664333221 11 455666777777655432 11222222222333345556666666666665
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.057 Score=45.19 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhccccccccc
Q 008818 266 SSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGA 339 (552)
Q Consensus 266 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~ 339 (552)
+.+....+.+..++... -+-..++..+...|++++|+..++.++....+. .-+-..++.++.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~------------ 137 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL------------ 137 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH------------
Confidence 33334444444444432 245677889999999999999999998643322 112344555555
Q ss_pred ccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 340 NTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 340 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
+.|.+++|+..+....... =.+..-...|.++...|+-++|+..|+++++.+++.
T Consensus 138 ---------q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 138 ---------QQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred ---------HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9999999999887654321 124456678999999999999999999999998544
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.14 E-value=0.001 Score=39.23 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEILL 188 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (552)
+|..||.+|..+|++++|+.+|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999887643
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.12 E-value=0.089 Score=49.71 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=78.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008818 303 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 382 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 382 (552)
.-|++.++.+|.+..+|..+....-......... .-....-.+.-+.+|++|++.+|++..++..+-.+..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~---------~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~ 76 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS---------KAERRALAERKLSILERALKHNPDSERLLLGYLEEGE 76 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc---------hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4577888889999999988887665321100000 1112233567788999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 008818 383 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l 416 (552)
+..+.++..+-+++++..+|++...|........
T Consensus 77 ~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999999999999999999888876654433
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.06 E-value=0.52 Score=49.15 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=96.2
Q ss_pred HHhHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHhhccccccchhHHH-HHHHhhhh
Q 008818 136 EEKVSSLKTGLVHVARKMPK----NAHAHFLLGLMYQ-RLGQPLKAVSSYEKAEEILLRCEADIARPELLS-LVQIHHAQ 209 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p~----~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~ 209 (552)
.+-+..+.++++.+++..+- .+.+++.+|.+++ ...+++.|..++.+++.+... +++.. ...+...+
T Consensus 34 ~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-------~~~~d~k~~~~~ll 106 (608)
T PF10345_consen 34 YKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-------HRLTDLKFRCQFLL 106 (608)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-------cchHHHHHHHHHHH
Confidence 34455566666666642221 3458899999988 788999999999999988432 22221 12223333
Q ss_pred cccccccCCCccccccCchhHHHHHHHHHHHHhcCcc---hHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHhcC--CCC
Q 008818 210 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR---QAV-VWNTL--GLILLKSGRLQSSISVLSSLLAVD--PNN 281 (552)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~~~~~~A~~~~~~al~~~--p~~ 281 (552)
+.++...+. ..|+..+++.++...+ ... ..+.+ ...+...+++..|++.++...... ..+
T Consensus 107 ~~i~~~~~~------------~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 107 ARIYFKTNP------------KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHhcCH------------HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 444332222 3388888888765443 222 22222 333434489999999999988775 344
Q ss_pred HHH----HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 282 CDC----IGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 282 ~~~----~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
+.+ ....+.+....+..+++++..+++..
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 332 33446666777888888888888754
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=1.1 Score=51.93 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=81.5
Q ss_pred CCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC-CC--------
Q 008818 445 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PK-------- 515 (552)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------- 515 (552)
.........|...+++....|.++.|....-.+.....+.+....|..+...|+-..|+..+++.++.+ |+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 344566789999999999999999999999888888888899999999999999999999999999653 22
Q ss_pred --------cHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHhc
Q 008818 516 --------AAHIWANLANAYYLTGDH--RSSGKCLEKVLMVYC 548 (552)
Q Consensus 516 --------~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~~ 548 (552)
...+.+.++......|+. .+-+.+|..+.++++
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 122445555555666664 345667888888776
No 281
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.00 E-value=0.0023 Score=56.80 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=61.3
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
..|+.++|...|+.++.+.|++++++..+|.+....++.-+|-++|-+|+.++|.+..++.+.+...
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 5677899999999999999999999999999999999999999999999999999999988776543
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.41 Score=48.08 Aligned_cols=32 Identities=9% Similarity=-0.153 Sum_probs=25.6
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE 184 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (552)
+..++..|..++......-.++-|...|-+.-
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 34478999999999888888888888887653
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.95 E-value=0.0017 Score=37.41 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999998874
No 284
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.78 Score=52.93 Aligned_cols=254 Identities=11% Similarity=0.059 Sum_probs=144.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccc
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 333 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 333 (552)
.-..+...|++..|..+|++++..+|+....+...-......|.+...+...+-.....++...-|+.++.--.
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaa------ 1528 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAA------ 1528 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHH------
Confidence 34455667888888888888888888877777777777777888888887777666655666666665554322
Q ss_pred ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH-----HHHHHHHHHhhCCCC----
Q 008818 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-----SGKCLEKAAKLEPNC---- 404 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-----A~~~~~~al~~~p~~---- 404 (552)
.+.++++.-..+.. ..+-++..+.. +|.+.....+-+. .++-.+.. .+.|-.
T Consensus 1529 --------------W~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~-~i~~lsa~s~ 1589 (2382)
T KOG0890|consen 1529 --------------WRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSREL-VIENLSACSI 1589 (2382)
T ss_pred --------------hhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHH-hhhhHHHhhc
Confidence 25566665554433 11112222221 5555544333221 11111111 111100
Q ss_pred ----cchHHHHHHH-HHHhHhhccCchHHHhHHHHHHHHHhhc---CCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHh
Q 008818 405 ----MSTRYAVAVS-RIKDAERSQEPTEQLSWAGNEMASILRE---GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 476 (552)
Q Consensus 405 ----~~~~~~la~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 476 (552)
...+-.+... .+.+.. .....+.. .... ..+..-|.+....-....+..+-+-.+++
T Consensus 1590 ~~Sy~~~Y~~~~kLH~l~el~--------------~~~~~l~~~s~~~~s-~~~sd~W~~Rl~~tq~s~~~~epILa~RR 1654 (2382)
T KOG0890|consen 1590 EGSYVRSYEILMKLHLLLELE--------------NSIEELKKVSYDEDS-ANNSDNWKNRLERTQPSFRIKEPILAFRR 1654 (2382)
T ss_pred cchHHHHHHHHHHHHHHHHHH--------------HHHHHhhccCccccc-cccchhHHHHHHHhchhHHHHhHHHHHHH
Confidence 0000000000 000000 00011111 1111 11223444444433333334444444444
Q ss_pred hh---------cchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 477 EL---------SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 477 ~l---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
.+ +..-.+.|...|++....|.++.|..++-+|.+.. -+.+....|..++..|+-..|+..+++.++++
T Consensus 1655 s~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1655 SMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 22 23334679999999999999999999999998877 57899999999999999999999999999887
Q ss_pred cc
Q 008818 548 CS 549 (552)
Q Consensus 548 ~~ 549 (552)
-.
T Consensus 1733 ~~ 1734 (2382)
T KOG0890|consen 1733 FP 1734 (2382)
T ss_pred cc
Confidence 44
No 285
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.88 E-value=0.0058 Score=59.22 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=89.4
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
....|+...|++++..++...|.... ...+|+.+..+.|-...|-..+.+++.+....+-.++.+|.+|..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34567779999999999999986543 57789999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 008818 303 KCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~ 324 (552)
+.|+++++.+|+++.....+-.
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999887655443
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.83 E-value=0.017 Score=42.52 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQD 307 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (552)
..+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-...|++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 34567888899999999999999999999999999999999999998765 55666666666666665444444443
No 287
>PRK10941 hypothetical protein; Provisional
Probab=96.81 E-value=0.016 Score=52.51 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
..+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|+..++..++..|+++.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 35566788899999999999999999999999999999999999999999999999999999999999876544433
No 288
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.80 E-value=0.19 Score=44.27 Aligned_cols=217 Identities=12% Similarity=0.155 Sum_probs=131.9
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcccccc----chhHHHHHH
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAH----AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIA----RPELLSLVQ 204 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~~~~ 204 (552)
+..+...+.|...|+++++..++..+ ++..+..+++++|++++-+..|++.+..-...-.... -...+..+.
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 34455778888899999999887654 6778889999999999999999998865211000000 000111111
Q ss_pred HhhhhcccccccCCCccccccCchhHHHHHHHHHHHHh--cCcchHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008818 205 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ--SDTRQAVVWN----TLGLILLKSGRLQSSISVLSSLLAVD 278 (552)
Q Consensus 205 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~ 278 (552)
.. .+.+--...|+..++ .+..+...|+ .||.+|+..++|.+-.+.+++.-.-.
T Consensus 117 tS---------------------~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 117 TS---------------------KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred hh---------------------hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 11 111111222222221 1223344454 58999999999988877777654432
Q ss_pred C------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchh
Q 008818 279 P------------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 346 (552)
Q Consensus 279 p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (552)
. .-.+.|..-.++|..+.+-.+-...|++++.+...-+..+ .+|.+-.+- |..
T Consensus 176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECG--------------GKM 240 (440)
T KOG1464|consen 176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECG--------------GKM 240 (440)
T ss_pred ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcC--------------Ccc
Confidence 1 1134555666788888888888889999997754433222 344444332 555
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCC-----cHH--HHHHHHHHHHHcC
Q 008818 347 LDQASAVNVAKECLLAALKADPK-----AAH--IWANLANAYYLTG 385 (552)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~-----~~~--~~~~la~~~~~~~ 385 (552)
+.+.|+|++|...|-++++.... ... -|..||..+.+.|
T Consensus 241 Hlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 241 HLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 66889999999888888876432 222 2455666666654
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.76 E-value=0.68 Score=45.93 Aligned_cols=295 Identities=12% Similarity=0.020 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Q 008818 230 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG-IAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~a 308 (552)
.+.+...|...|...|.....|...|..-.+.|..+.+++.|++++.--|.....|..+- .+-...|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 345555666666677776667777777777777777777777777777776666555433 3333456666666677777
Q ss_pred HhhCCCCH---HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--
Q 008818 309 ILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-- 383 (552)
Q Consensus 309 l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 383 (552)
......+. ..|..+..... ..+++..-...|++.++.--.....++..=.-+..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en---------------------~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFEN---------------------GQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred HHhcccchhccHHHHHHHHHHh---------------------ccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcC
Confidence 66544332 22333222222 56667777777777776432222222211111111
Q ss_pred ----cCChHHHHHHHHHHHhh--CCCCcchHH--HHHH--------------HHHHhHhhccCchHHHhHHHHHHHHHh-
Q 008818 384 ----TGDHRSSGKCLEKAAKL--EPNCMSTRY--AVAV--------------SRIKDAERSQEPTEQLSWAGNEMASIL- 440 (552)
Q Consensus 384 ----~~~~~~A~~~~~~al~~--~p~~~~~~~--~la~--------------~~l~~~~~~~~~~~~~~~~~~~~~~~~- 440 (552)
+...+++...-...... .+......- .... ..+.......... .........+..
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~--~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKV--YQKSEEEEEKRWG 277 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHH--HHhhHhHHHHHHh
Confidence 12223333322222211 000000000 0000 0000000000000 000000000000
Q ss_pred -hc--------CCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcch--hhhhhhhHHHHHHhhhhHHHHHHHHHHH
Q 008818 441 -RE--------GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAA 509 (552)
Q Consensus 441 -~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (552)
+. ..+.....-..|......-...|+++.....+...+-+. ....|...+......|+.+-|-..+..+
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 00 111112233455556666667777777777777755533 3356666666666667777777666666
Q ss_pred HHh-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 510 LKA-DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 510 l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
.++ .|..+.++..-+.+-...|++..|...+++..+-+
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 664 35556667777777777777777777777776655
No 290
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.64 E-value=0.012 Score=37.92 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008818 283 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 320 (552)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 320 (552)
+.++.+|..++++|+|++|..+.+.+++++|++..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35666777777777777777777777777777766653
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.19 Score=41.16 Aligned_cols=47 Identities=9% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 230 LEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLA 276 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 276 (552)
.++|+..|...-+..-.. .-+.+..|.+....|+...|+..|..+-.
T Consensus 74 ~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 74 TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 355555555544433222 12344555666666666666666665544
No 292
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.61 E-value=0.2 Score=47.67 Aligned_cols=107 Identities=9% Similarity=0.016 Sum_probs=76.5
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc---------------------------ccccc
Q 008818 289 GIAYFQSGD-MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------------------------GAGAN 340 (552)
Q Consensus 289 a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---------------------------~~~~~ 340 (552)
|.-+++.|. -++|+..++.+++..+.+.......-......+.+... +....
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 445566666 78999999999998888765443332222222221111 11122
Q ss_pred cccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008818 341 TGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 396 (552)
Q Consensus 341 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 396 (552)
+.-|..+...|+|.++.-+-.-..+++| .+.++..+|.+++...+|++|..++..
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3346777889999999999999999999 699999999999999999999998865
No 293
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.58 E-value=0.01 Score=38.24 Aligned_cols=43 Identities=9% Similarity=-0.164 Sum_probs=35.0
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 008818 485 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 527 (552)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 527 (552)
.+|.+|..+.+.|+|++|..+++.+|+++|+|..+......+-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4577888999999999999999999999999998876655543
No 294
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.55 E-value=0.88 Score=44.52 Aligned_cols=411 Identities=14% Similarity=0.106 Sum_probs=229.0
Q ss_pred hhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008818 109 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAH-FLLGLMYQRLGQPLKAVSSYEKAEEIL 187 (552)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (552)
..|++.+...|....+|...... ....++++..++.|.+++..--+ .+.| ..+-.+....|+...+....-+|.+..
T Consensus 40 ~~YEq~~~~FP~s~r~W~~yi~~-El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~ 117 (656)
T KOG1914|consen 40 ETYEQLVNVFPSSPRAWKLYIER-ELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFA 117 (656)
T ss_pred HHHHHHhccCCCCcHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHH
Confidence 67888899999999999875555 66778899999999998876544 4444 345555566677666665555555442
Q ss_pred hhccc-ccc-chhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHH-HHHH-----------
Q 008818 188 LRCEA-DIA-RPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-VWNT----------- 253 (552)
Q Consensus 188 p~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~----------- 253 (552)
-..-. ... .+-+...+... .+-.....+-++.+.+.-...|++++..--.+.+ .|..
T Consensus 118 l~kig~di~s~siW~eYi~FL---------~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ 188 (656)
T KOG1914|consen 118 LEKIGMDIKSYSIWDEYINFL---------EGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINII 188 (656)
T ss_pred HHHhccCcccchhHHHHHHHH---------HcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence 11100 000 11111111111 0111122234556778888899999854322211 2211
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHhc-------CCC----C-------HHHHHHHHHHHHHcCC--------HHHHHHHH
Q 008818 254 --LGLILLKSGRLQSSISVLSSLLAV-------DPN----N-------CDCIGNLGIAYFQSGD--------MEQSAKCF 305 (552)
Q Consensus 254 --la~~~~~~~~~~~A~~~~~~al~~-------~p~----~-------~~~~~~la~~~~~~g~--------~~~A~~~~ 305 (552)
.=.+-.....|..|...+++...+ +|. . .+.|.++...-...+- -..-.-.|
T Consensus 189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay 268 (656)
T KOG1914|consen 189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY 268 (656)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence 111223344566677766665443 111 1 1234333332222111 12344567
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHc
Q 008818 306 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLT 384 (552)
Q Consensus 306 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 384 (552)
++++..-+.+++.|+.....+....+ .+...|..-......+++..+|++++..-- .+...++.++..-...
T Consensus 269 eQ~ll~l~~~peiWy~~s~yl~~~s~-------l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~ 341 (656)
T KOG1914|consen 269 EQCLLYLGYHPEIWYDYSMYLIEISD-------LLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESR 341 (656)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhH-------HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 88888888899999887776652210 111122222222335778888888876422 2444555555443333
Q ss_pred CC---hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHH-H
Q 008818 385 GD---HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA-V 460 (552)
Q Consensus 385 ~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 460 (552)
-+ ++.-..++.+++.+...+....+..-+..+.... .+. .+..++..........-.++..-+. -
T Consensus 342 ~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e-------Glk----aaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 342 YDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE-------GLK----AARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred cccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhh-------hHH----HHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 33 6677778888887655444333322221111111 111 1122222222111111233333332 3
Q ss_pred HhchhhHHHHHHHHHhhhcchhhhhhh--hHHHHHHhhhhHHHHHHHHHHHHHh--CCC-cHHHHHHHHHHHHHcCChhH
Q 008818 461 QKTHHEVAAAFETEENELSKMEECAGA--GESAFLDQASAVNVAKECLLAALKA--DPK-AAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 461 ~~~~~~~~~A~~~~~~~l~~~~~~~~~--~la~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~lg~~~~~~g~~~~ 535 (552)
|...++..-|...+...+........+ .....+...++-..|...|++++.. .|+ ...+|..+-..-..-|+...
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 566789999999999988866665544 3344677889999999999999987 444 35788888888888999998
Q ss_pred HHHHHHHHHHHhc
Q 008818 536 SGKCLEKVLMVYC 548 (552)
Q Consensus 536 A~~~~~~al~l~~ 548 (552)
+++.=++-...++
T Consensus 491 i~~lekR~~~af~ 503 (656)
T KOG1914|consen 491 ILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcc
Confidence 8888777776665
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.54 E-value=0.0082 Score=45.10 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=59.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHh
Q 008818 163 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 242 (552)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 242 (552)
++.-++..|++-+|++..+..+...++... ....+...|.+ +++.+-.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~---------~~~lh~~QG~i-----------------------f~~lA~~ 49 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES---------SWLLHRLQGTI-----------------------FYKLAKK 49 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc---------hHHHHHHHhHH-----------------------HHHHHHh
Confidence 467789999999999999999987543311 01122222222 2222222
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
.+..+...-+.+ .++++|.++..+.|..+..++.+|.-+.....|++++.-.++++.+
T Consensus 50 ten~d~k~~yLl-----------~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 50 TENPDVKFRYLL-----------GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ccCchHHHHHHH-----------HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 222222222222 3456666666666666666666666655555666666666666543
No 296
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.49 E-value=0.01 Score=52.82 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=65.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
.+.-..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.+++.+....
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344456789999999999999999999999999999999999999999999999999999999998777654
No 297
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.45 E-value=0.04 Score=48.21 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=71.0
Q ss_pred HcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCc---
Q 008818 169 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT--- 245 (552)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p--- 245 (552)
....+++|+..|.-|+-... .........+.++..++++|..+|+. ..+..-+..|+..|.+++....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~-----~~~~~~s~~A~l~LrlAWlyR~~~~~----~~E~~fl~~Al~~y~~a~~~e~~~~ 159 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQ-----IKKEKPSKKAGLCLRLAWLYRDLGDE----ENEKRFLRKALEFYEEAYENEDFPI 159 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHH-----HhCCCHHHHHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 34567888888888875421 11223335677778888888888886 4555566788888888876542
Q ss_pred ---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008818 246 ---RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 278 (552)
Q Consensus 246 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 278 (552)
+...+.+.+|.+..+.|++++|+.+|.+++...
T Consensus 160 ~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 160 EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 234577788888888888888888888888753
No 298
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.40 E-value=0.055 Score=40.77 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008818 353 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 400 (552)
+-.++++|.++..+.|..+..++.+|.-+-....|++++.-.++++.+
T Consensus 60 Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 345888999999999999999999998888888889999988888865
No 299
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=1.7 Score=46.06 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=56.3
Q ss_pred HHHhHHHHHhchhhHHHHHHHHHhhhcc-------------h--------------hhhhhhhHHHHHHhhhhHHHHHHH
Q 008818 453 AWAGFAAVQKTHHEVAAAFETEENELSK-------------M--------------EECAGAGESAFLDQASAVNVAKEC 505 (552)
Q Consensus 453 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------------~--------------~~~~~~~la~~~~~~~~~~~A~~~ 505 (552)
-|..++..+...|+|..|...-+++-.. . ..+-+-.+...|...|-|++-+..
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence 3566666667777777766665552210 0 001133455567788889999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 008818 506 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 540 (552)
Q Consensus 506 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 540 (552)
++.++-+..-+...+..||.+|.+- ++++-.+++
T Consensus 1302 ~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1302 LEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred HHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 9999988888888888888888654 344444433
No 300
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=1.1 Score=43.92 Aligned_cols=243 Identities=9% Similarity=0.034 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccch
Q 008818 266 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 345 (552)
Q Consensus 266 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (552)
...+.+.......|.++......+..+...|+.+.|+..++..+. +.-.+. ...+++ .+|.
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~---~~l~~f--------------E~aw 311 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQV---KSLMVF--------------ERAW 311 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHH---HHHHHH--------------HHHH
Confidence 344444555566788888888888888888887777777777765 211111 011111 1233
Q ss_pred hHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH-HHHHH--------cCChHHHHHHHHHHH---hhCCCCcchHHHHHH
Q 008818 346 CLDQASAVNVAKECLLAALKADPKAAHIWANLA-NAYYL--------TGDHRSSGKCLEKAA---KLEPNCMSTRYAVAV 413 (552)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~al---~~~p~~~~~~~~la~ 413 (552)
++.-..+|..|-..+....+...-..-.|..++ -|+.. .|+-++|-.+++... ...|.+...-..
T Consensus 312 ~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f--- 388 (546)
T KOG3783|consen 312 LSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF--- 388 (546)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---
Confidence 333566778888877777766544333444443 33321 234444444443332 222222111000
Q ss_pred HHHHhHhhccCchHHHhHHHHHHHHHhhcCC---CCC---CCCHHHHHhHHHHHhchhhHHHHHHHHHh-hhcchhhh--
Q 008818 414 SRIKDAERSQEPTEQLSWAGNEMASILREGD---PVQ---IEPPIAWAGFAAVQKTHHEVAAAFETEEN-ELSKMEEC-- 484 (552)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~~~~-- 484 (552)
. .....+...... ... |-...+|..-|.-.....+..+....+.. ..+..+..
T Consensus 389 ---------------~---~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~l 450 (546)
T KOG3783|consen 389 ---------------I---VRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGL 450 (546)
T ss_pred ---------------H---HHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHH
Confidence 0 001111111110 000 11111222222222222233322222222 23222222
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHhC---CC----cHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHhc
Q 008818 485 AGAGESAFLDQASAVNVAKECLLAALKAD---PK----AAHIWANLANAYYLTGD-HRSSGKCLEKVLMVYC 548 (552)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~~ 548 (552)
-.+.+|.++..+|+-..|..+|..+++.. .. -|.++|.+|.+|..+|. ..++..++.+|-+-+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 24578899999999999999999888431 11 47899999999999999 9999999999987663
No 301
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.33 E-value=1.3 Score=44.05 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=47.3
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Q 008818 134 SREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 188 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (552)
........++..+...+...|...-.|...|..-.++|..+.+++.|++++.-.|
T Consensus 56 ~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip 110 (577)
T KOG1258|consen 56 DSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP 110 (577)
T ss_pred CchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence 3445558888899999999999999999999999999999999999999998744
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.27 E-value=0.041 Score=44.77 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=73.1
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (552)
..++.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..|+.+....|..+.+.-.++.|+..+|+.+-= .+-
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr-~~A 100 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR-RYA 100 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH-HHH
Confidence 4456788999998888899999999999999999999999999999999988999999999999999999886532 223
Q ss_pred HHHHhhCCCCHHHH
Q 008818 306 QDLILKDQNHPAAL 319 (552)
Q Consensus 306 ~~al~~~p~~~~~~ 319 (552)
..+++..+ ++.+.
T Consensus 101 ~evle~~~-d~~a~ 113 (160)
T PF09613_consen 101 DEVLESGA-DPDAR 113 (160)
T ss_pred HHHHhcCC-ChHHH
Confidence 34444443 33443
No 303
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.18 E-value=0.0096 Score=33.70 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDP 279 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 279 (552)
++..+|.++...|++++|+.+|+++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 304
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.16 E-value=0.098 Score=38.46 Aligned_cols=44 Identities=27% Similarity=0.282 Sum_probs=18.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 360 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 360 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 33444444444444444444444444444444444444444443
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.15 E-value=0.15 Score=41.58 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
.+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|+|.+|+..|+.+....|..+.+.-.++.++.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555555555555555555555444444444444444433
No 306
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.08 E-value=1.5 Score=42.52 Aligned_cols=84 Identities=10% Similarity=-0.076 Sum_probs=67.9
Q ss_pred hhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-chHHHHHHHHHH
Q 008818 106 RISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ-PLKAVSSYEKAE 184 (552)
Q Consensus 106 ~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al 184 (552)
++...|.+|....+.+...|..--.. +...+.+.....++.+++..+|++++.|..-|...+..+. .+.|...|.+++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f-~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAF-CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHH-HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34456778888877777777653333 4455558899999999999999999999999999888876 999999999999
Q ss_pred HHHhhc
Q 008818 185 EILLRC 190 (552)
Q Consensus 185 ~~~p~~ 190 (552)
+.+|+.
T Consensus 168 R~npds 173 (568)
T KOG2396|consen 168 RFNPDS 173 (568)
T ss_pred hcCCCC
Confidence 998775
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.08 E-value=0.72 Score=40.79 Aligned_cols=165 Identities=13% Similarity=0.122 Sum_probs=94.6
Q ss_pred CchhHHHHHHHHHHHHhcCcchHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCH-HHHHHHHHHHHHc
Q 008818 226 EPEELEEILSKLKESMQSDTRQAV----VWNTLGLILLKSGRLQSSISVLSSLLAVD-----PNNC-DCIGNLGIAYFQS 295 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~ 295 (552)
...++++|+..|++++++.+...+ ++..+..+++++|+|++-...|++.+..- .+.. .....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 456789999999999999886543 66678889999999999999888876531 1111 1111111111112
Q ss_pred CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC-----
Q 008818 296 GDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP----- 368 (552)
Q Consensus 296 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----- 368 (552)
.+.+--...|+..+.. +..+...|+ .....+|.+|...+.|.+-.+.+.+.-....
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWF-----------------KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWF-----------------KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeee-----------------eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 2222222233322211 111222221 1122344445577777776666665543221
Q ss_pred -------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 008818 369 -------KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 369 -------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
.-.++|..-...|-.+++-.+-...|++++.+...-+..
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 123455556677888888888888999999876654443
No 308
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.07 E-value=0.3 Score=37.12 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=62.5
Q ss_pred HhchhhHHHHHHHHHhhhcc---h-----------hhhhhhhHHHHHHhhhhHHHHHHHHHHHH-------HhCCCcHHH
Q 008818 461 QKTHHEVAAAFETEENELSK---M-----------EECAGAGESAFLDQASAVNVAKECLLAAL-------KADPKAAHI 519 (552)
Q Consensus 461 ~~~~~~~~~A~~~~~~~l~~---~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~ 519 (552)
....|.|++|...++++++. . +.-.+-.|+..+..+|+|++++..-+++| +++.+....
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 44556788888888875541 1 11224578889999999988877777776 456665544
Q ss_pred ----HHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 520 ----WANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 520 ----~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.++.|..+..+|+.++|+..|+++-+++.
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998874
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=1.2 Score=44.16 Aligned_cols=128 Identities=20% Similarity=0.091 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccc
Q 008818 265 QSSISVLSSLLAVDPNNCDCIGN--LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 342 (552)
Q Consensus 265 ~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (552)
.-++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|.+..+..+++..+.
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale--------------- 112 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALE--------------- 112 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHH---------------
Confidence 33566666666667766665333 3666666777777777777777777777777777777766
Q ss_pred cchhHHHhcCHHHH-HHHHHHHHhcCCCcHHHHHHH------HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 343 EGACLDQASAVNVA-KECLLAALKADPKAAHIWANL------ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 343 ~~~~~~~~~~~~~A-~~~~~~al~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
..|....+ ......+....|++......+ +.....+|+..++....+++..+.|.++.....+..
T Consensus 113 ------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 113 ------LDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred ------HhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 33333333 334444666667765554444 666777777777777777777777777555444433
No 310
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.06 E-value=0.012 Score=33.28 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 283 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
.++..+|.++...|++++|+..|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999998875
No 311
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.90 E-value=0.18 Score=44.22 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=69.2
Q ss_pred CchhHHHHHHHHHHHHhc------Cc-chHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhcCC------CCHHHH
Q 008818 226 EPEELEEILSKLKESMQS------DT-RQAVVWNTLGLILLKSGRLQ-------SSISVLSSLLAVDP------NNCDCI 285 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~------~p-~~~~~~~~la~~~~~~~~~~-------~A~~~~~~al~~~p------~~~~~~ 285 (552)
....+++|++.|.-|+-. .+ .-+.++..+|.+|...|+.+ .|++.|.+++.... +...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345678888888877632 11 23567888999999999854 45666666655432 225688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q 008818 286 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAA 324 (552)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 324 (552)
+.+|.++.+.|++++|+++|.+++....... .....++.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999999999999999997543332 34444443
No 312
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.88 E-value=1.6 Score=47.07 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=80.1
Q ss_pred ccccCchhHHHHHHHHHHHHhcCcchH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008818 222 DKELEPEELEEILSKLKESMQSDTRQA---VVWNTLGLILLKS----G---RLQSSISVLSSLLAVDPNNCDCIGNLGIA 291 (552)
Q Consensus 222 ~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 291 (552)
+..+....|++|+..|++.....|... ++.+..|.....+ | .+++|+..|++.- -.|.-|--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHH
Confidence 346678899999999999999998664 5777888776653 2 5778888888743 366777789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008818 292 YFQSGDMEQSAKCFQDLILKDQNHPAALIN 321 (552)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 321 (552)
|.++|++++-+++|.-+++..|+++..-..
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 999999999999999999999998875433
No 313
>PRK10941 hypothetical protein; Provisional
Probab=95.84 E-value=0.13 Score=46.60 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=38.8
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 409 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (552)
+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 5666666666666666666666666666666666666666666666666666666655443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.82 E-value=0.024 Score=34.62 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 518 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 518 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.++.++|.+|...|++++|+.++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 5678899999999999999999999998774
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.81 E-value=0.19 Score=42.68 Aligned_cols=103 Identities=16% Similarity=0.029 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINY 322 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 322 (552)
..++..+|..|.+.|++++|++.|.++...... ..+.++.+..+....+++.....+..++-..-.. +... .+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~-~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER-RNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH-HHH
Confidence 468889999999999999999999998876443 2567888999999999999999999988765322 2222 222
Q ss_pred HHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 367 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 367 (552)
-.++. |......++|..|...|-.+....
T Consensus 115 lk~~~----------------gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYE----------------GLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHH----------------HHHHHHhchHHHHHHHHHccCcCC
Confidence 22222 444457788888888777665443
No 316
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.80 E-value=2.8 Score=45.36 Aligned_cols=108 Identities=10% Similarity=0.072 Sum_probs=75.6
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHh
Q 008818 163 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 242 (552)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 242 (552)
...++.....|++|+..|++.-...|+-.+. ..+.+..|..+...... .-....+++|+..|++.-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~- 546 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEG---------YEAQFRLGITLLEKASE----QGDPRDFTQALSEFSYLH- 546 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccc---------hHHHHHhhHHHHHHHHh----cCChHHHHHHHHHHHHhc-
Confidence 4456677788999999999998876653221 22333333333222222 112256888999888754
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 284 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 284 (552)
..|.-+--|...|.+|.++|++++-+++|.-|++..|+.|..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 455566778889999999999999999999999998887654
No 317
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.70 E-value=0.11 Score=39.39 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=65.0
Q ss_pred cCchhHHHHHHHHHHHHhcCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCC----
Q 008818 225 LEPEELEEILSKLKESMQSDTR------------QAVVWNTLGLILLKSGRLQSSISVLSSLLAV-------DPNN---- 281 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~---- 281 (552)
+..|-|++|...++++++.... ++-++..|+..+..+|+|++++..-.+++.. +.+.
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 3457789999999999875321 3557778999999999999988877777653 4443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
..+-+..|..+..+|+.++|+..|+.+-++
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 345578899999999999999999988653
No 318
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=1.2 Score=43.93 Aligned_cols=160 Identities=15% Similarity=0.082 Sum_probs=112.1
Q ss_pred cccCchhHHHHHHHHHHHHhc------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Q 008818 223 KELEPEELEEILSKLKESMQS------------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------------- 277 (552)
Q Consensus 223 ~~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------- 277 (552)
.+-....|++|...|.-++.. .|-+...+..++.+...+|+.+-|.....++|=.
T Consensus 247 ~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 247 KFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred EeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Confidence 344567788999988887654 3556788999999999999998887777776532
Q ss_pred --------CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhcccccccccccccch
Q 008818 278 --------DPNNCD---CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGA 345 (552)
Q Consensus 278 --------~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (552)
.|.|.. +++..-..+.+.|.+.-|.++.+-.++++|. ++-+...+..+|.-
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL----------------- 389 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL----------------- 389 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH-----------------
Confidence 233332 3334455567789999999999999999998 77776666666552
Q ss_pred hHHHhcCHHHHHHHHHHH-----HhcCCCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCC
Q 008818 346 CLDQASAVNVAKECLLAA-----LKADPKAAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 346 ~~~~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~ 403 (552)
+..+|.=-++.++.. +..-|+ ...-..+|..|..... -+.|...+.+|+...|.
T Consensus 390 ---rareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 390 ---RAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred ---HHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 555666666666554 222343 3334456666666555 56788899999988884
No 319
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.68 E-value=0.019 Score=48.96 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=29.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008818 260 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 315 (552)
Q Consensus 260 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 315 (552)
+.++.+.|.+.|.+++.+-|++...|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555555555555555555555555555555555555555555555443
No 320
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.59 E-value=0.024 Score=48.41 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=55.7
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 347 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
..+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34789999999999999999999999999999999999999999999999999999874
No 321
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.41 Score=47.21 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCcchHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-H
Q 008818 232 EILSKLKESMQSDTRQAVVWNT--LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD-L 308 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a 308 (552)
-++..+...+..++.++..+.. +...+...+....+...+..++..+|++..+..+|+.+....|....+...+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3556666666677877776443 477778889999999999999999999999999999999888877777666655 8
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 386 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 386 (552)
....|++......+-.++. ++..+...|+..++.....++....|.++.+...+......+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQ---------------LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred HhcCcchHHHHhhHHHHHH---------------HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 8888998887766644443 35556688999999999999999999987666555555444333
No 322
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.77 Score=43.37 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLK------------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD- 297 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 297 (552)
.++++.=.+.+..+|+...+|+..-.++.. +.-+++-+.+...++..+|+...+|+.+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 677888888889999988887764443332 2345677888899999999999999999999997764
Q ss_pred -HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH
Q 008818 298 -MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 376 (552)
Q Consensus 298 -~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 376 (552)
+..-++..+++++.+|.+..+|...-.+..... .......+=+++..+++..++.|..+|..
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~-----------------~~~~~~~~El~ftt~~I~~nfSNYsaWhy 188 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE-----------------RSRNLEKEELEFTTKLINDNFSNYSAWHY 188 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh-----------------cccccchhHHHHHHHHHhccchhhhHHHH
Confidence 688899999999999999998876655554210 02224667788999999999999999999
Q ss_pred HHHHHHH------cCC------hHHHHHHHHHHHhhCCCCcchHHH
Q 008818 377 LANAYYL------TGD------HRSSGKCLEKAAKLEPNCMSTRYA 410 (552)
Q Consensus 377 la~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~ 410 (552)
...++.. .|+ ...-+..-..|+-.+|++..+|+.
T Consensus 189 Rs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 189 RSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 8887763 231 234455667778889999888864
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.49 E-value=0.047 Score=51.93 Aligned_cols=127 Identities=9% Similarity=0.080 Sum_probs=92.5
Q ss_pred ccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008818 222 DKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 301 (552)
Q Consensus 222 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 301 (552)
.+.+..|+.-.|-.....+++..|.++......+.+...+|+|+.|.+.+..+-..-.....+...+-.....+|+++.|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567788888888899999999999998889999999999999999888766555444445566666777788899988
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
...-.-.+...-.+++....-+... ..+|-++++.-.+++.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa---------------------~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSA---------------------DALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccH---------------------HHHhHHHHHHHHHHHHhccCCh
Confidence 8887777765544444332111111 1566677788778877777665
No 324
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.38 E-value=0.2 Score=54.20 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=116.0
Q ss_pred CchhHHHHHH------HHHH-HHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHH
Q 008818 226 EPEELEEILS------KLKE-SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGI 290 (552)
Q Consensus 226 ~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~ 290 (552)
..|.+.+|.+ .+.. .-.+.|.....+..++.++...|++++|+..-.++.-+ .|+....+.+++.
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 4455555555 5553 33457888899999999999999999999998887654 3455678889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHH
Q 008818 291 AYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 362 (552)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 362 (552)
..+..++...|+..+.++..+ .|.-.....++..++. ..++++.|+.+.+.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~---------------------~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL---------------------GVEEADTALRYLES 1082 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh---------------------hHHHHHHHHHHHHH
Confidence 999999999999999988865 2444444556666655 77889999999999
Q ss_pred HHhcCCC--------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008818 363 ALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 363 al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 400 (552)
|++.... ....+..++..+...+++..|+...+....+
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9885322 4566777888888888888888877766654
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.33 E-value=0.14 Score=48.85 Aligned_cols=127 Identities=13% Similarity=0.014 Sum_probs=101.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccccc
Q 008818 258 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 337 (552)
Q Consensus 258 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 337 (552)
.+..|+.-.|-+-...++...|.++......+.+...+|+|+.+...+..+-..-.....+...+-..+.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~---------- 368 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH---------- 368 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh----------
Confidence 3567899999999999999999999999999999999999999998887665543333333333333333
Q ss_pred ccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 338 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
.+|++++|.....-.+...-+++++...-+.....+|-++++...+++.+.++|...
T Consensus 369 -----------~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 369 -----------GLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred -----------chhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 789999999999888887777788777777777888999999999999999987643
No 326
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.27 E-value=0.52 Score=36.90 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 248 AVVWNTLGLILLKSG---RLQSSISVLSSLLA-VDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 248 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
....++++.++.+.. +..+.+.+++..++ -.|+ ..+..+.|+..+++.++|++++.+.+..++..|++.++....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 567788888888765 45678899999996 4453 467889999999999999999999999999999998876433
No 327
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.19 E-value=3.4 Score=40.30 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLI 309 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 309 (552)
..-...|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 5667889999999999999999998888888889999999999999999999999999988888776 999999999999
Q ss_pred hhCCCCHHHHHHHHHHH
Q 008818 310 LKDQNHPAALINYAALL 326 (552)
Q Consensus 310 ~~~p~~~~~~~~l~~~~ 326 (552)
+.+|+.+..|...-.+-
T Consensus 168 R~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRME 184 (568)
T ss_pred hcCCCChHHHHHHHHHH
Confidence 99999999886655443
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.18 E-value=0.14 Score=40.90 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 300 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 300 (552)
.++.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..|+...+-.+..+.+.-.++.|+..+|+.+-
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 45668888888888888999999999999999999999999999999888887888888888999988888653
No 329
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=3.9 Score=40.62 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=113.1
Q ss_pred hhHHhHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHH
Q 008818 134 SREEKVSSLKTGLVHVARK------------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 201 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 201 (552)
.....+++++..|.-+... +|-+.+.+..++.+...+|+.+-|.....++|-..-
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d------------- 315 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD------------- 315 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH-------------
Confidence 3567788888888766544 477788999999999999999999999999885420
Q ss_pred HHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008818 202 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV---VWNTLGLILLKSGRLQSSISVLSSLLAVD 278 (552)
Q Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~ 278 (552)
.+++..-. ...|.+ .+ -=..|.+-. +++.....+.+.|-+..|.++++-.++++
T Consensus 316 --~a~hp~F~--~~sg~c----RL---------------~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd 372 (665)
T KOG2422|consen 316 --RALHPNFI--PFSGNC----RL---------------PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD 372 (665)
T ss_pred --HHhccccc--cccccc----cC---------------cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 00000000 001111 00 001233332 33444556678899999999999999999
Q ss_pred CC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhc
Q 008818 279 PN-NCDCIGNLGIAY-FQSGDMEQSAKCFQDL-----ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 351 (552)
Q Consensus 279 p~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (552)
|. ++-+...+..+| .+..+|+--++.++.. +..-|+.. .-..++..+. ...
T Consensus 373 p~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l---------------------~~~ 430 (665)
T KOG2422|consen 373 PSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFL---------------------RKN 430 (665)
T ss_pred CcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHH---------------------hcC
Confidence 98 887776666666 4556777777776665 23334432 2234444444 222
Q ss_pred ---CHHHHHHHHHHHHhcCCC
Q 008818 352 ---AVNVAKECLLAALKADPK 369 (552)
Q Consensus 352 ---~~~~A~~~~~~al~~~p~ 369 (552)
.-..|...+.+|+...|.
T Consensus 431 ~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred ChhhHHHHHHHHHHHHHhCcH
Confidence 256788888888888773
No 330
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=3 Score=41.05 Aligned_cols=222 Identities=15% Similarity=0.161 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCC
Q 008818 140 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 219 (552)
Q Consensus 140 ~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 219 (552)
+...+++.......|+++...+..+..+...|+.+.|+..+...+.. + ...+..... +..++.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~--~------~kQ~~~l~~--fE~aw~------- 312 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPI--R------MKQVKSLMV--FERAWL------- 312 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccH--H------HHHHHHHHH--HHHHHH-------
Confidence 66667777777889999999999999999999988889999988762 1 111111111 122222
Q ss_pred ccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---cCCCCH---HH
Q 008818 220 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG-LILLK--------SGRLQSSISVLSSLLA---VDPNNC---DC 284 (552)
Q Consensus 220 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~al~---~~p~~~---~~ 284 (552)
..-..+|.+|-..+....+.....-..|..++ .|++. .|+-++|..+++.... ..|.+. ..
T Consensus 313 ----~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f 388 (546)
T KOG3783|consen 313 ----SVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF 388 (546)
T ss_pred ----HHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH
Confidence 22345678888888887776665555555554 33322 2344444444433322 211111 01
Q ss_pred HHHHHH---------------------HHHHcC----CHHHHHHHHHHHHh---h-CCCCHHH-HHHHHHHHHHhhcccc
Q 008818 285 IGNLGI---------------------AYFQSG----DMEQSAKCFQDLIL---K-DQNHPAA-LINYAALLLCKYGSVL 334 (552)
Q Consensus 285 ~~~la~---------------------~~~~~g----~~~~A~~~~~~al~---~-~p~~~~~-~~~l~~~~~~~~~~~~ 334 (552)
....+. +|...| ..++.. -++..+. . ++++.-. ++.+
T Consensus 389 ~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~------------ 455 (546)
T KOG3783|consen 389 IVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLK------------ 455 (546)
T ss_pred HHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHH------------
Confidence 111111 122111 111111 1111111 1 1111111 2233
Q ss_pred cccccccccchhHHHhcCHHHHHHHHHHHHhcC---CC----cHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCC
Q 008818 335 AGAGANTGEGACLDQASAVNVAKECLLAALKAD---PK----AAHIWANLANAYYLTGD-HRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~ 404 (552)
|.++..+|+...|..+|...++.. .. -+.+++.+|..|..+|. ..++..++.+|-....++
T Consensus 456 ---------g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 456 ---------GVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 444448999999999999887431 11 47899999999999999 999999999999877554
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.99 E-value=0.057 Score=32.89 Aligned_cols=30 Identities=33% Similarity=0.248 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
+.++..+|.+|...|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457899999999999999999999999987
No 332
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.98 E-value=0.29 Score=38.27 Aligned_cols=61 Identities=21% Similarity=0.146 Sum_probs=51.2
Q ss_pred HhcCHHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 008818 349 QASAVNVAKECLLAALK-ADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 409 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (552)
...+..+.+.+++..++ .+|. .-+..+.|+..+++.++|+.++.+....++..|++..+..
T Consensus 47 ~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35567888999999996 4454 5678889999999999999999999999999999976653
No 333
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=1.9 Score=40.83 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHH
Q 008818 230 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR--LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAK 303 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~ 303 (552)
+++-+.+...+++.+|+...+|+.+..++.+.+. +..=++.++++++.+|.+-.+|...=.+..... ...+-++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 3777888899999999999999999999988764 678899999999999999888766655554332 3567788
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 377 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 377 (552)
+..+++..++.+..+|.....++....++..... .........-++....++-.+|++..+|+..
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~---------~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN---------FMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCc---------cCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 8999999999999999988887764433221100 0011123445666677888899999888773
No 334
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.85 E-value=0.11 Score=50.22 Aligned_cols=90 Identities=17% Similarity=0.031 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 008818 296 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 375 (552)
Q Consensus 296 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 375 (552)
+.+..|+..|.+++...|.....+.+.+.+++.+. -.|+.-.|+..+..+++++|....+|+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk------------------W~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK------------------WRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh------------------ccccHHHHHHhHHhhccCChHHHHHHH
Confidence 34455566666666666655555555555554221 233445555556666666666666666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 376 NLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 376 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
.|+.++..++++.+|+.+...+....|.
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 6666666666666666666555555553
No 335
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.77 E-value=0.063 Score=48.13 Aligned_cols=90 Identities=17% Similarity=0.250 Sum_probs=77.9
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 236 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN-LGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 236 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
.|.++-...|+++..|...+..-.+.|-+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.++++.+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4555666788999999998888888899999999999999999999999987 566778899999999999999999999
Q ss_pred CHHHHHHHHHH
Q 008818 315 HPAALINYAAL 325 (552)
Q Consensus 315 ~~~~~~~l~~~ 325 (552)
.+..|...-..
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99988765443
No 336
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.77 E-value=3.3 Score=37.99 Aligned_cols=128 Identities=14% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCcccc
Q 008818 144 TGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 223 (552)
Q Consensus 144 ~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (552)
+.-..+++++|+.+.++..|+.--. --..+|.+.|++|++.... .+.........|..
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~----------------~yr~sqq~qh~~~~---- 262 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET----------------IYRQSQQCQHQSPQ---- 262 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH----------------HHhhHHHHhhhccc----
Confidence 3344566699999999998886533 3467899999999876211 01110000000110
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAV--VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDME 299 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 299 (552)
. +...+.+ .+.. .-..|+.|-.++|+..+|++.|+...+-.|-. ..++-++-..+..+.-|.
T Consensus 263 -------~------da~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 263 -------H------EAQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred -------h------hhhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111222 2233 33468999999999999999999988877632 234556666666665555
Q ss_pred HHHHHHHH
Q 008818 300 QSAKCFQD 307 (552)
Q Consensus 300 ~A~~~~~~ 307 (552)
+....+-+
T Consensus 329 DvqavLak 336 (556)
T KOG3807|consen 329 DVQAVLAK 336 (556)
T ss_pred HHHHHHHh
Confidence 54444433
No 337
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.75 E-value=0.16 Score=49.11 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=81.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 300 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 300 (552)
.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.|+.++..++++.+
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 34556778999999999999999999999999998875 566778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCH
Q 008818 301 SAKCFQDLILKDQNHP 316 (552)
Q Consensus 301 A~~~~~~al~~~p~~~ 316 (552)
|+.+...+....|.+.
T Consensus 464 al~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDV 479 (758)
T ss_pred hhhhHHHHhhcCchhh
Confidence 9999988887777554
No 338
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.73 E-value=4.2 Score=39.08 Aligned_cols=296 Identities=12% Similarity=0.105 Sum_probs=171.8
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008818 236 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 315 (552)
Q Consensus 236 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 315 (552)
-++.-++.+|++...|+.|..-+..+|.+++-.+.|++...-.|-.+.+|...-.--....++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 5677788999999999999999999999999999999999999988888877666666778899999999999865332
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---------cCC
Q 008818 316 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL---------TGD 386 (552)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---------~~~ 386 (552)
.+.|.... -|..+.... .-| ...-..-+|.+..-..+-.+|.....|...+..+.. +.+
T Consensus 109 ldLW~lYl-~YIRr~n~~--------~tG---q~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 109 LDLWMLYL-EYIRRVNNL--------ITG---QKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred HhHHHHHH-HHHHhhCcc--------ccc---chhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 44443222 222211100 000 011123344444444445678888888877766543 344
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHH------HHHHHHHhHhhccCchHHHhHHHHHHHH---HhhcCCCCCC---------
Q 008818 387 HRSSGKCLEKAAKLEPNCMSTRYA------VAVSRIKDAERSQEPTEQLSWAGNEMAS---ILREGDPVQI--------- 448 (552)
Q Consensus 387 ~~~A~~~~~~al~~~p~~~~~~~~------la~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------- 448 (552)
.+.-...|.+++..--++..-.+. ..+..+-.....-+....+..+...+.. +.+-.....|
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 566677788888654344322211 1111111111111111222222222211 1111111111
Q ss_pred --CCHHHHHhHHHHHhchh------hHHHHHH-HHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Q 008818 449 --EPPIAWAGFAAVQKTHH------EVAAAFE-TEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 517 (552)
Q Consensus 449 --~~~~~~~~~~~~~~~~~------~~~~A~~-~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (552)
....-|.++-..-...+ -..+-+. .+.+.++ ......|+.-...+...++-+.|+...++++...|.
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-- 334 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-- 334 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--
Confidence 11112444333322211 1122221 2333444 344566776666777888888898888888777665
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 518 HIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 518 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
..+.++.+|....+-+.-..+|+++.+-+
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 77889999998888888888888877644
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.66 E-value=0.64 Score=37.29 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
+......-...++++++...+...--+.|+.+..-..-|.++...|+|.+|+..|+....-.+..+-..-.++.++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3333344444566666666665555556666666666666666666666666666665554444443333333333
No 340
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.56 E-value=0.68 Score=39.28 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
..++..+|..|.+.|+++.|++.|.++........ +.++.+..+.+ ..+++.....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i---------------------~~~d~~~v~~ 94 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI---------------------FFGDWSHVEK 94 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH---------------------HhCCHHHHHH
Confidence 46788999999999999999999999887543322 23344444444 7888999988
Q ss_pred HHHHHHhcCCC--cH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008818 359 CLLAALKADPK--AA----HIWANLANAYYLTGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 359 ~~~~al~~~p~--~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 401 (552)
+..++-..-.. +. .....-|..+...++|.+|...|-.+....
T Consensus 95 ~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 95 YIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 88887665222 22 234455777788999999999987665443
No 341
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.41 E-value=0.12 Score=46.54 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=74.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN-LANAYY 382 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~ 382 (552)
.|.++....|+++..|...+.... +.|.+.+--..|.++++.+|.+++.|.. -+.-+.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~---------------------k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~ 153 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI---------------------KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELF 153 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhh
Confidence 455566667889999887776655 6778899999999999999999999987 566778
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 383 LTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
..++++.+...|.++++++|+++..|+..
T Consensus 154 ~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 154 EIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred hhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 89999999999999999999999888754
No 342
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.36 E-value=0.42 Score=43.30 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=64.4
Q ss_pred HHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 474 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 474 ~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
.+..+......++..++..+...|+++.++..+++.+..+|-+..+|..+-.+|...|+...|+..|++.-++.
T Consensus 144 ~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 144 QRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 33344455556677888899999999999999999999999999999999999999999999999999987754
No 343
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.32 E-value=2.4 Score=42.51 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCchHHHHHHHH
Q 008818 162 LLGLMYQRLGQPLKAVSSYEK 182 (552)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~ 182 (552)
.++.++.-.|+|.+|.+.|.+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 345555555666666555554
No 344
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.29 E-value=0.17 Score=37.68 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHhhhhHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 493 LDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
..+.|+|..|++.+.+.+..... ...++.++|.++...|++++|+..+++++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34667777777777766654221 2456788889999999999999999999988754
No 345
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.32 Score=48.25 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=78.4
Q ss_pred ccCchhHHHHHHHHHHHHhcCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 297 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 297 (552)
.++..+|..+++.|...+..-|.+ +.....++.||..+.+.+.|.++++.|-+.+|.++-.....-.+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 678899999999999999876654 45677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 008818 298 MEQSAKCFQDLILK 311 (552)
Q Consensus 298 ~~~A~~~~~~al~~ 311 (552)
-++|+.+.......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999998877654
No 346
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.96 E-value=0.11 Score=30.81 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 518 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 518 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
+++..||.+-...++|++|+..|++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888764
No 347
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.86 E-value=0.49 Score=42.29 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
...++=..+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|+..+...++..|+.+.+-.....
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 344556678889999999999999999999999999999999999999999999999999999999877554443
No 348
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.85 E-value=3.2 Score=34.30 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=94.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc
Q 008818 258 LLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 335 (552)
Q Consensus 258 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 335 (552)
+...+..++|+..|...-+-.-.. .-+.+..|.+....|+...|+..|..+-...|- |.....++.+--
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlra-------- 138 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRA-------- 138 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHH--------
Confidence 345688899999998876654433 345678899999999999999999998765442 333323333221
Q ss_pred ccccccccchhHHHhcCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 336 GAGANTGEGACLDQASAVNVAKECLLAAL-KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
+..+...|.|+.-....+..- ..+|-...+.-.||..-++.|++.+|...|..+.. +...+....+.+.
T Consensus 139 --------a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 139 --------AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred --------HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 222337888887776655432 23455677888999999999999999999999887 4444444444433
No 349
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.68 E-value=0.63 Score=50.55 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=96.2
Q ss_pred cchhHHHhcCHHHHHH------HHHH-HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 008818 343 EGACLDQASAVNVAKE------CLLA-ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 415 (552)
Q Consensus 343 ~~~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 415 (552)
.|......|.+.+|.+ .+.. .-.+.|+....+..++.++...|++++|+..-.++.-+......
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g--------- 1008 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG--------- 1008 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc---------
Confidence 4555555667776766 5542 23347888999999999999999999999988777644221000
Q ss_pred HHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhh----------cchhhhh
Q 008818 416 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL----------SKMEECA 485 (552)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l----------~~~~~~~ 485 (552)
...++....+.+++...+..+....|+..+..+. .|.....
T Consensus 1009 -----------------------------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen 1009 -----------------------------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred -----------------------------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence 0000011112222222222222222222222211 1111222
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 486 GAGESAFLDQASAVNVAKECLLAALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
..+++.++...++++.|+.+++.|++.+-. ....+..+++++...+++..|+...+....+|.
T Consensus 1060 ~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1060 FINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 346666677777888888888887774321 345566677777777777777777777777764
No 350
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=0.98 Score=45.07 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 285 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
+.+-|.-.++..+|..+++.|...+..-|.+...... +.... .+..||..+.+.+.|.+++++|-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR--------------~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQR--------------ALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHH--------------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455667788999999999999999887765433211 22222 23445569999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008818 365 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 365 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 401 (552)
+.+|.++-....+-.+....|.-++|+.+..+.....
T Consensus 422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999999998888899999999999999998877653
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.43 E-value=4.4 Score=40.08 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=66.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccc
Q 008818 258 LLKSGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 336 (552)
Q Consensus 258 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 336 (552)
....++++++....... ++-|.- ..-...++..+...|..+.|+..- .++...+.|+.
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl------------ 329 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELAL------------ 329 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHH------------
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHH------------
Confidence 34568888877766521 122222 344667777788888888886643 34556666654
Q ss_pred cccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 337 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
+.|+++.|.+..+ ..++...|..||.....+|+++-|..+|+++-
T Consensus 330 ------------~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 330 ------------QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp ------------HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred ------------hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 8899998887654 23468899999999999999999999998864
No 352
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.17 E-value=0.2 Score=29.71 Aligned_cols=29 Identities=34% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999987
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.05 E-value=0.12 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHH
Q 008818 518 HIWANLANAYYLTGDHRSSGKCLE 541 (552)
Q Consensus 518 ~~~~~lg~~~~~~g~~~~A~~~~~ 541 (552)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777777777777777777665
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.02 E-value=0.14 Score=27.42 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEK 182 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (552)
+.+++.+|.++...|++++|...+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35778999999999999999998763
No 355
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.92 E-value=7.2 Score=35.55 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=68.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSL----------------LAVDPNNCDCIGNLG-IAYFQSGDMEQSAKCFQD 307 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~ 307 (552)
-.++..+..+|..+++.|++.+|..+|-.. .+-.|...+.+...+ .-|...++...|...+..
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 367899999999999999999999887432 112455555555444 445677999999887777
Q ss_pred HHhh----CCC----------CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 008818 308 LILK----DQN----------HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 373 (552)
Q Consensus 308 al~~----~p~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 373 (552)
.++. +|+ ... ..+...++....+. .....|..-.+.|...++.+|.....
T Consensus 167 f~~~~~~~~p~~~~~~~~~~~~~P-llnF~~lLl~t~e~---------------~~~~~F~~L~~~Y~~~L~rd~~~~~~ 230 (260)
T PF04190_consen 167 FTSKLIESHPKLENSDIEYPPSYP-LLNFLQLLLLTCER---------------DNLPLFKKLCEKYKPSLKRDPSFKEY 230 (260)
T ss_dssp HHHHHHHH---EEEEEEEEESS-H-HHHHHHHHHHHHHH---------------T-HHHHHHHHHHTHH---HHHHTHHH
T ss_pred HHHHHhccCcchhccccCCCCCCc-hHHHHHHHHHHHhc---------------CcHHHHHHHHHHhCccccccHHHHHH
Confidence 6655 332 222 22333333211000 01223444455555666667777778
Q ss_pred HHHHHHHHHHcC
Q 008818 374 WANLANAYYLTG 385 (552)
Q Consensus 374 ~~~la~~~~~~~ 385 (552)
...+|..|+...
T Consensus 231 L~~IG~~yFgi~ 242 (260)
T PF04190_consen 231 LDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHH---
T ss_pred HHHHHHHHCCCC
Confidence 888888888754
No 356
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.41 E-value=1.1 Score=33.37 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=41.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008818 258 LLKSGRLQSSISVLSSLLAVDPN---------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 258 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 313 (552)
..+.|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35678888887777777655221 135677888888999999999999999987643
No 357
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.36 E-value=0.84 Score=41.43 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
...++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999987764
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.08 E-value=2.5 Score=29.75 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH---HHHHHHHcCCHHHHHHHH
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN---LGIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~ 305 (552)
..|.-++...+.++|+..++++++..++.+..+.. +..+|...|++.+.+.+-
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554443333222 223344445554444443
No 359
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.87 E-value=0.68 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHHhhCCC
Q 008818 372 HIWANLANAYYLTGDHRSSGKC--LEKAAKLEPN 403 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~--~~~al~~~p~ 403 (552)
+.+..+|..+..+|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4677888899999999999999 4477666664
No 360
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.86 E-value=1.6 Score=41.40 Aligned_cols=78 Identities=6% Similarity=-0.008 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCHHHHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI---LKDQNHPAALINYAALL 326 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~ 326 (552)
+-..+..||+++++.+-|+..-.+.|.++|....-+...|.|+..+.+|.+|-+.+.-+. -+..........+..+|
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIkly 309 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLY 309 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHH
Confidence 344689999999999999999999999999999999999999999999999987665543 23333333333444444
Q ss_pred H
Q 008818 327 L 327 (552)
Q Consensus 327 ~ 327 (552)
+
T Consensus 310 W 310 (569)
T PF15015_consen 310 W 310 (569)
T ss_pred H
Confidence 4
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.75 E-value=1.6 Score=37.27 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 008818 231 EEILSKLKESMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----NCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 231 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 302 (552)
++|...|-++-... -++++..+.||..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 66777666554322 256888888998877 57889999999999998543 5889999999999999999874
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.63 E-value=2.6 Score=41.70 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=47.1
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
++.|+++.|.+..++ .+++..|..||...+.+|+++-|.++|+++-. +..|..+|...|+.+.=.+.
T Consensus 329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHH
T ss_pred HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHH
Confidence 456777777765433 33567888888888888888888888887532 45566677777776555555
Q ss_pred HHHHH
Q 008818 305 FQDLI 309 (552)
Q Consensus 305 ~~~al 309 (552)
.+.+.
T Consensus 396 ~~~a~ 400 (443)
T PF04053_consen 396 AKIAE 400 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 363
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.62 E-value=0.67 Score=27.11 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISV 270 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~ 270 (552)
++.+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 364
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=8 Score=36.74 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=88.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Q 008818 255 GLILLKSGRLQSSISVLSSLLAV-DPN--------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--QNHPAALINYA 323 (552)
Q Consensus 255 a~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 323 (552)
...++.+.++++|..+-+..+.. .-. ....|+.+..+|...|+...-...+...+... .++......+.
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi 212 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI 212 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence 34445678889988877665542 111 24578888888888998777666666555432 12222222333
Q ss_pred HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 324 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
.+++ ..|...+.|+.|-....+..-- +...+...+.+|.+..-+++|..|.++|-.|+.
T Consensus 213 N~LL-----------------r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 213 NLLL-----------------RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred HHHH-----------------HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 3333 1233677788888877765411 112356678899999999999999999999999
Q ss_pred hCCCCc
Q 008818 400 LEPNCM 405 (552)
Q Consensus 400 ~~p~~~ 405 (552)
..|.+.
T Consensus 276 kapq~~ 281 (493)
T KOG2581|consen 276 KAPQHA 281 (493)
T ss_pred hCcchh
Confidence 999854
No 365
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.42 E-value=11 Score=38.06 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=46.1
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CCCCHHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------DPNNCDCIGNLG 289 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~p~~~~~~~~la 289 (552)
+++.|.+++|...---.+- ..-|..|+.--...=+++-|.+.|.++-.+ ....+ --..++
T Consensus 566 ~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA 639 (1081)
T KOG1538|consen 566 YIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLA 639 (1081)
T ss_pred hhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHH
Confidence 4566666666433211111 113556666666666777777777765332 11112 234577
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 008818 290 IAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~a 308 (552)
.++...|++.+|.+.|.+.
T Consensus 640 ~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHhhhhHHHHHHHHHHc
Confidence 8888889999998888764
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=11 Score=33.94 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=89.5
Q ss_pred ccCchhHHHHHHHHHHHHhcCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHH---HHhc--CCCCHHHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDT--------RQAVVWNTLGLILLKSGRLQSSISVLSS---LLAV--DPNNCDCIGNLGI 290 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~---al~~--~p~~~~~~~~la~ 290 (552)
..+.+++++|+..|.+.+.... +...+...++.+|...|++..-.+.... +... .|........+-.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 4567888999999999987621 2234677899999999987654333322 2211 1111111111111
Q ss_pred HH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc---
Q 008818 291 AY-FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--- 366 (552)
Q Consensus 291 ~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 366 (552)
.+ .....++.-+..+...++........+..+..-. .+...+.+.|+|.+|+......+..
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~---------------Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELEC---------------KLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 11 1223445555555555443222211211111110 1233344889999998887766542
Q ss_pred ---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 367 ---DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 367 ---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
.+.-..++..-..+|....+..++...+..|-.
T Consensus 158 ~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 158 YDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 234556777778888888888888877766644
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=2.3 Score=38.18 Aligned_cols=63 Identities=13% Similarity=-0.043 Sum_probs=57.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 488 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
++=..+.+.++++.|..+.++.+.++|+++.-+...|.+|.++|-+.-|++.++..++.+|..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 344478889999999999999999999999999999999999999999999999999998864
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.92 E-value=3.1 Score=35.58 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHHHHHhcCcc----hHHHHHHHHHHHHHcCCHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTR----QAVVWNTLGLILLKSGRLQSSI 268 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~ 268 (552)
...+.++++..+.++++..+. +++++..|+.++..+|+++.|-
T Consensus 152 ~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 152 TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456679999999999987554 4889999999999999999885
No 369
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.72 E-value=1.6 Score=41.34 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=63.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--------CC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008818 255 GLILLKSGRLQSSISVLSSLLAVD--------PN-----N-----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 316 (552)
Q Consensus 255 a~~~~~~~~~~~A~~~~~~al~~~--------p~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 316 (552)
|..++++++|..|..-|..++++. |. + ..+...+..||..+++.+-|+....+.|-++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 445566666666666666666652 11 1 12346789999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHH
Q 008818 317 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 363 (552)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 363 (552)
..+...+.+.. .+.+|.+|...+.-+
T Consensus 263 rnHLrqAavfR---------------------~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFR---------------------RLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 88877777776 666777776555433
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.70 E-value=3 Score=29.32 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=41.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhc
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWN---TLGLILLKSGRLQSSISVLSSLLAV 277 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~al~~ 277 (552)
++...+.++|+..++++++..++...-+. .+..+|...|+|.+.+.+-.+=+.+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999998877665444 4556788899999988876655443
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.63 E-value=1.2 Score=39.97 Aligned_cols=62 Identities=23% Similarity=0.072 Sum_probs=55.3
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 486 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
....+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.|...|++.-+..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 34455688899999999999999999999999999999999999999999999998876554
No 372
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.32 E-value=8.4 Score=31.11 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=75.7
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHH
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 428 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~ 428 (552)
..+.....+.+++..+..++.++..+..+..+|...+ ..+.+..++. .++....-..+..+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~yd~~~~~~~c-------------- 79 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSNHYDIEKVGKLC-------------- 79 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----ccccCCHHHHHHHH--------------
Confidence 5577888999999999888888888888888887653 4555555552 11211111111110
Q ss_pred HhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHH
Q 008818 429 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLA 508 (552)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (552)
.. ...|.....++.+.|.+.+|+..+ ....++++.|++++.+
T Consensus 80 ------------~~--------~~l~~~~~~l~~k~~~~~~Al~~~------------------l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 80 ------------EK--------AKLYEEAVELYKKDGNFKDAIVTL------------------IEHLGNYEKAIEYFVK 121 (140)
T ss_pred ------------HH--------cCcHHHHHHHHHhhcCHHHHHHHH------------------HHcccCHHHHHHHHHh
Confidence 00 023555666677778888877753 2233778888888876
Q ss_pred HHHhCCCcHHHHHHHHHHHHH
Q 008818 509 ALKADPKAAHIWANLANAYYL 529 (552)
Q Consensus 509 al~~~p~~~~~~~~lg~~~~~ 529 (552)
+.+++.|..++..+..
T Consensus 122 -----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 122 -----QNNPELWAEVLKALLD 137 (140)
T ss_pred -----CCCHHHHHHHHHHHHc
Confidence 3577888888876654
No 373
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.90 E-value=28 Score=36.55 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=40.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008818 492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 544 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 544 (552)
.....++++.+..++...-..........|.+|..+...|+.++|..+|+++.
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34477888877777776544344567888999999888999999999998874
No 374
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.79 E-value=29 Score=36.49 Aligned_cols=233 Identities=10% Similarity=0.043 Sum_probs=133.5
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhh
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL---GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ 209 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 209 (552)
....+.++....+-....+..|.++..|.....-...+ +.-.++...|++++.-. ...+-+...+......
T Consensus 123 lrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy------~~v~iw~e~~~y~~~~ 196 (881)
T KOG0128|consen 123 LRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY------NSVPIWEEVVNYLVGF 196 (881)
T ss_pred HHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc------ccchHHHHHHHHHHhc
Confidence 45667777777777777778899998888776655433 56677888888888632 1133344444444444
Q ss_pred cccccccCCCccccccCchhHHHHHHHHHHHHhcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 008818 210 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSD-------TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 282 (552)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 282 (552)
+..+ ...++++.-...|.+++..- ......+...-..|...-..++-+.++...+... -+.
T Consensus 197 ~~~~-----------~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~ 264 (881)
T KOG0128|consen 197 GNVA-----------KKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDE 264 (881)
T ss_pred cccc-----------cccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chh
Confidence 4443 34455577777777777532 2234455556666666666677888888877764 222
Q ss_pred HH----HHHHH--HH-HHHcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHH
Q 008818 283 DC----IGNLG--IA-YFQSGDMEQSAKCFQD-------LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 348 (552)
Q Consensus 283 ~~----~~~la--~~-~~~~g~~~~A~~~~~~-------al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (552)
.+ |.... .+ .....+++.|...+.+ .+...|.-...|..+.....
T Consensus 265 ~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~--------------------- 323 (881)
T KOG0128|consen 265 DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEK--------------------- 323 (881)
T ss_pred hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------------------
Confidence 11 11111 11 1223444555444333 33333333334444444333
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCC
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAY-YLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
..|+...-...+++++...+.+...|...|... ..++-.+.+...+-+++...|-.
T Consensus 324 ~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~t 380 (881)
T KOG0128|consen 324 KSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWT 380 (881)
T ss_pred hcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchH
Confidence 677777777778888777777777777766543 23444445555555555555543
No 375
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.73 E-value=1.2 Score=41.20 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 267 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 267 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
|+.+|.+|+.+.|++...++.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555443333444445444443
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.44 E-value=1.9 Score=38.85 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 309 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (552)
.+...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.+++.|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344567788999999999999999999999999999999999999999888888887754
No 377
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.29 E-value=18 Score=33.43 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 328 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 328 (552)
..-..+...-++..+..+-++.-..+++++|+...++..++.- ..--..+|.+.|+++++..... ++......
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~----yr~sqq~q- 257 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETI----YRQSQQCQ- 257 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHH----HhhHHHHh-
Confidence 3444555666777788888888888899998888888877653 2233567888888887643211 11111111
Q ss_pred hhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008818 329 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 402 (552)
..|...+|. .+.+.+ ...+...++.|-.++|+..+|++.++...+-.|
T Consensus 258 --------------------h~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 258 --------------------HQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred --------------------hhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 112111111 122221 233446789999999999999999999888776
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=21 Score=32.27 Aligned_cols=193 Identities=15% Similarity=0.087 Sum_probs=109.9
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH-HHHH
Q 008818 347 LDQASAVNVAKECLLAALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV-SRIK 417 (552)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~l~ 417 (552)
..+.+++++|+..|.+.+...-. .......++.+|...|++..-.......-+.-.+.......... ..+.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 33788999999999999876221 24567889999999998764433332222111111111111110 1111
Q ss_pred hHhhccCch--------HHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc---chhh---
Q 008818 418 DAERSQEPT--------EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEE--- 483 (552)
Q Consensus 418 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~--- 483 (552)
......+.. ....|+..+-...++. ..-..+..++.+.|.|.+|+......+. ..+.
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~---------~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRL---------ELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 111111111 1223343333333333 3345677788999999999987766332 2221
Q ss_pred --hhhhhHHHHHHhhhhHHHHHHHHHHHHHhC-----CCcHHH--HHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 484 --CAGAGESAFLDQASAVNVAKECLLAALKAD-----PKAAHI--WANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 484 --~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
..+..-..+|....+..++...+..|-... |....+ -..-|.......+|.-|-.+|-++++-+.
T Consensus 164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 334455567888888888887777665432 222222 23346666778899999999999887553
No 379
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.49 E-value=4.6 Score=41.36 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=109.3
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
++++-..+-..|....+|+.-++..+..-.+ |+. -++.....+.+..+.++.+.+. .|+-++|+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t------~~vve~~nv~f~YaFALNRRNr--------~GDRakAL~ 264 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDT------LKVVETHNVRFHYAFALNRRNR--------PGDRAKALN 264 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cch------hhhhccCceEEEeeehhcccCC--------CccHHHHHH
Confidence 4567777788888888998877776665443 321 1222222233444445444444 488899999
Q ss_pred HHHHHHhcC-cchHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 008818 236 KLKESMQSD-TRQAVVWNTLGLILLK---------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKC 304 (552)
Q Consensus 236 ~~~~al~~~-p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~ 304 (552)
..-.+++.. |-.++.+...|.+|-. .+..+.|+++|+++++..|... .=.+++.++...|+ ++...+.
T Consensus 265 ~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~El 343 (1226)
T KOG4279|consen 265 TVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLEL 343 (1226)
T ss_pred HHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHH
Confidence 988888754 4456677777777754 3567789999999999998643 23445555555443 3333333
Q ss_pred HHHHHhhCC-----CCH---HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH
Q 008818 305 FQDLILKDQ-----NHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 376 (552)
Q Consensus 305 ~~~al~~~p-----~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 376 (552)
-.-.++++. ... ..|...|..+- +-.-.+++.+|+..-+...++.|-.......
T Consensus 344 q~IgmkLn~LlgrKG~leklq~YWdV~~y~~------------------asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 344 QQIGMKLNSLLGRKGALEKLQEYWDVATYFE------------------ASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHhHHHhhh------------------hhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 222222211 011 11111111111 0014577888888888888887764444334
Q ss_pred HHHH
Q 008818 377 LANA 380 (552)
Q Consensus 377 la~~ 380 (552)
++.+
T Consensus 406 meni 409 (1226)
T KOG4279|consen 406 MENI 409 (1226)
T ss_pred HHHH
Confidence 4443
No 380
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.86 E-value=2.6 Score=38.97 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 294 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 294 (552)
|+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++....-.+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765568889999888877
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.52 E-value=36 Score=33.74 Aligned_cols=75 Identities=17% Similarity=0.035 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
.+..+-.++...-.+.-....+.+++... ++..+++.++.+|... ..++-...+++.++.+-++...-..++..|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33344444444444444555566666543 3455666666666666 345555666666666655555544454444
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.27 E-value=1.4 Score=27.08 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008818 521 ANLANAYYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 521 ~~lg~~~~~~g~~~~A~~~~~~al~ 545 (552)
+.|+.+|..+|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777888888888777777764
No 383
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=86.01 E-value=19 Score=30.18 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=86.2
Q ss_pred CCChHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 154 PKNAHAHFLLGLMYQR-LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 154 p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
...++....||..+.- +.+|++|...|+.-..-+ ..|..---. +.-.+..+-|. .+++..
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-------~y~kSCyKy----G~y~~~GKgG~--------~~~l~~ 91 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-------SYPKSCYKY----GMYMLAGKGGD--------DASLSK 91 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------CCcHHHHHh----hhhhhcccCCC--------ccCHHH
Confidence 4566777777776543 346777777776644321 112211111 11111222233 377889
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHc-----CC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKS-----GR--LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS---------- 295 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------- 295 (552)
|++.+..+-. -+.+.+...+|.+++.- ++ ..+|..++.++-.+. +..+.+.|...|..-
T Consensus 92 a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~ 167 (248)
T KOG4014|consen 92 AIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPG 167 (248)
T ss_pred HHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCC
Confidence 9999988876 44567777888877653 23 678899999887663 556666666655443
Q ss_pred --------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 296 --------------GDMEQSAKCFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 296 --------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
.+.+.|.++-.++-+++ ++.+..++.+.|.
T Consensus 168 ~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 168 EGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYK 211 (248)
T ss_pred CCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH
Confidence 44556666666665543 4455555555553
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.93 E-value=22 Score=34.52 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHH--HHHHHcCCHHHHHHHHHHHHhh
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC--DCIGNLG--IAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la--~~~~~~g~~~~A~~~~~~al~~ 311 (552)
.....+.-.++.++|..|.+.|..+...-|... ..+..+. .-++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444567788899999999999999988533333 3444444 4446788999999999998865
No 385
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.82 E-value=39 Score=33.50 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=47.5
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHhhCCCCcc
Q 008818 347 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--------------------TGDHRSSGKCLEKAAKLEPNCMS 406 (552)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~al~~~p~~~~ 406 (552)
|....++++|+..+...++.+..+..+..++..-+.. -.++-+++..|++.+..+..+.-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFV 294 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFV 294 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceE
Confidence 4467889999999999999988888777776665555 56788899999999888776643
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.80 E-value=26 Score=31.42 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=36.8
Q ss_pred chhHHHhcCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCC
Q 008818 344 GACLDQASAVNVAKECLLAALKADPK-AAHIWANLANAYYL-TGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 344 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p 402 (552)
+.+..+.|+|++.+.++.+++..+++ +..-...++.+|-. .|....+.+.+........
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~ 68 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE 68 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc
Confidence 44445888889999998888888776 44555556666532 4555566666655554433
No 387
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.65 E-value=2.2 Score=23.73 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 008818 497 SAVNVAKECLLAALKADPKAAHIWANLANAY 527 (552)
Q Consensus 497 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 527 (552)
|+++.|...|++++...|.++.+|.......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4678899999999999999999998877653
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.42 E-value=29 Score=31.66 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHH
Q 008818 280 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 359 (552)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 359 (552)
.++..+..+|..|++.|++.+|..+|-.. +++......-. .
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~l----------------------------------l 128 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVML----------------------------------L 128 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHH----------------------------------H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHH----------------------------------H
Confidence 56889999999999999999988877432 22222211000 0
Q ss_pred HHHHHhcCCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhh
Q 008818 360 LLAALKADPKAAHIWANLAN-AYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 360 ~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~ 400 (552)
+....+-.|.....+...+. .|...++...|...+....+.
T Consensus 129 ~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 129 EEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11122334555666666665 466679999999888776655
No 389
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.22 E-value=9.6 Score=38.24 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=55.6
Q ss_pred HhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHH
Q 008818 97 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKA 176 (552)
Q Consensus 97 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 176 (552)
..+++.+.+.+ +..++|+++.++.+..... ...-+.++.|.+... ..++..-|..||.+....|++..|
T Consensus 617 rt~va~Fle~~-g~~e~AL~~s~D~d~rFel-----al~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 617 RTKVAHFLESQ-GMKEQALELSTDPDQRFEL-----ALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhHHhHhhhc-cchHhhhhcCCChhhhhhh-----hhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhH
Confidence 45566666665 7778888887776655554 344455555555443 456677888999999999999999
Q ss_pred HHHHHHHHHH
Q 008818 177 VSSYEKAEEI 186 (552)
Q Consensus 177 ~~~~~~al~~ 186 (552)
.++|.++-..
T Consensus 686 ~EC~~~a~d~ 695 (794)
T KOG0276|consen 686 SECFLRARDL 695 (794)
T ss_pred HHHHHhhcch
Confidence 9999887654
No 390
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.22 E-value=26 Score=33.51 Aligned_cols=63 Identities=11% Similarity=-0.128 Sum_probs=37.3
Q ss_pred HHHhHHHHHhchhhHHHHHHHHHhhhcch------hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC
Q 008818 453 AWAGFAAVQKTHHEVAAAFETEENELSKM------EECAGAGESAFLDQASAVNVAKECLLAALKADPK 515 (552)
Q Consensus 453 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 515 (552)
....+-..|...+.|+.|-....+..-|. ..+-.|.+|.+..-.++|..|.++|-+|+...|+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 44455566666666666666655533211 1123446666666666777777777777777775
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.73 E-value=63 Score=34.96 Aligned_cols=176 Identities=13% Similarity=0.036 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCH--HHHH
Q 008818 284 CIGNLGIAYFQSGDMEQSAKCFQDLILKD----QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV--NVAK 357 (552)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~ 357 (552)
-+..|+..|...|+.++|++.+.+...-. +.....+-.....+. ..+.- +-..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~---------------------~l~~~~~~Li~ 564 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLK---------------------KLGAENLDLIL 564 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHH---------------------HhcccchhHHH
Confidence 36789999999999999999999988733 222223322222221 22222 4444
Q ss_pred HHHHHHHhcCCCcHH-----------HHHHHH--HHHHHcCChHHHHHHHHHHHhhCCCCcchHH-HHHHHHHHhHhhcc
Q 008818 358 ECLLAALKADPKAAH-----------IWANLA--NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY-AVAVSRIKDAERSQ 423 (552)
Q Consensus 358 ~~~~~al~~~p~~~~-----------~~~~la--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~la~~~l~~~~~~~ 423 (552)
++-.-.++.+|.... .-.... .-|......+-++.+++.++.........+. .++...........
T Consensus 565 ~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~ 644 (877)
T KOG2063|consen 565 EYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQA 644 (877)
T ss_pred HHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhcc
Confidence 444444444443110 001111 2245667778888899998877665443333 23322222221010
Q ss_pred CchHH----HhH-HHHHHHHHhhcCCCCCC-------CCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc
Q 008818 424 EPTEQ----LSW-AGNEMASILREGDPVQI-------EPPIAWAGFAAVQKTHHEVAAAFETEENELSK 480 (552)
Q Consensus 424 ~~~~~----~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 480 (552)
..... .+. ..+.....+.......| .....|...+.++.+.|+-++|+..|...++.
T Consensus 645 ~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d 713 (877)
T KOG2063|consen 645 STDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDD 713 (877)
T ss_pred CchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 00000 000 12222222222222222 22456778888888889999998886554443
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.49 E-value=3.3 Score=22.93 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 296 GDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 296 g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
|+.+.|...|++++...|.+...|..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666655443
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.36 E-value=2.2 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 285 IGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
.+.+|.+|..+|+.+.|...++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999995
No 394
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=84.12 E-value=35 Score=32.69 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChh-----HHHHHHHHHHHHhcc
Q 008818 499 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR-----SSGKCLEKVLMVYCS 549 (552)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~l~~~ 549 (552)
+..|+.++++|.. .++|+.|..+|.++..+|+.- +=..+|++|-+++..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKK 387 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 6788888888876 457889999999988888642 234566666665543
No 395
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.12 E-value=27 Score=31.58 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLK--------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--GDMEQ 300 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~ 300 (552)
..|++.-...+..+|....+|...-.+... .--++.-+..+..+++-+|.+...|...-.++... ..+..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 566667777777888887777766555444 22345667788899999999999998888887665 66888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH---
Q 008818 301 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL--- 377 (552)
Q Consensus 301 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--- 377 (552)
-+...++.+..++.+...|...-.++.. +.-.....++....++-..++..++.+..+|...
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~---------------ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~ 193 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRT---------------IEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIW 193 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeec---------------chhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHH
Confidence 8888899999999888776544333310 1111133344555677778888899999999877
Q ss_pred HHHHHHcCC------hHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 378 ANAYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 378 a~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
-......|+ +++-+.+.-.++-.+|++..+|..+
T Consensus 194 ~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 194 IERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 333333444 4555666677777899998877644
No 396
>PF12854 PPR_1: PPR repeat
Probab=83.93 E-value=2.6 Score=24.15 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008818 155 KNAHAHFLLGLMYQRLGQPLKAVSSYEKA 183 (552)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (552)
.+...|..+-..|.+.|+.++|++.|++.
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45678999999999999999999999863
No 397
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.52 E-value=1.7 Score=40.22 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
....+++.+-...+.+..|+.....++..++....+++..+..+....++++|++.+..+....|++......+...
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34555888888999999999888888888888899999999999999999999999999999999887765544433
No 398
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.25 E-value=19 Score=34.89 Aligned_cols=59 Identities=14% Similarity=-0.048 Sum_probs=39.1
Q ss_pred HHHhHHHHHhchhhHHHHHHHHHh-hhc---------chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 008818 453 AWAGFAAVQKTHHEVAAAFETEEN-ELS---------KMEECAGAGESAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 453 ~~~~~~~~~~~~~~~~~A~~~~~~-~l~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (552)
....+.+++.-.|+|..|++.+.. .+. ......+|.+|-+|+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777888777777654 121 22224467778888888888888888777663
No 399
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.94 E-value=51 Score=32.57 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=24.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 523 LANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 523 lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
-|.-|.+.|+...|..+|.+|+.+|...
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 4667899999999999999999999653
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.81 E-value=4.1 Score=35.12 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=31.2
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 281 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 281 (552)
+.+.+.+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34445555555555555555555555555555555555555555555555555543
No 401
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.55 E-value=53 Score=32.46 Aligned_cols=113 Identities=14% Similarity=-0.048 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCcc---ccccCchhHHHHHH
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSL---DKELEPEELEEILS 235 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~A~~ 235 (552)
....||..++.+|+|+-|...|+.+.+-.-.+ ..+...+.++...+..+...+.... ....-..-++.|..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D------kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~ 283 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND------KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYY 283 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc------hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHH
Confidence 56779999999999999999999987743221 2223333333333333333332200 00011223455666
Q ss_pred HHHHHH----hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008818 236 KLKESM----QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 277 (552)
Q Consensus 236 ~~~~al----~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 277 (552)
.|.++- .....-..+....+.++...|.+.+|...+-+....
T Consensus 284 ~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 284 TYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 666631 111122345555666777777777776666555544
No 402
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=82.44 E-value=43 Score=31.31 Aligned_cols=198 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred cchhHHHhcCHHHHHHHHHHHHh------cCCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 008818 343 EGACLDQASAVNVAKECLLAALK------ADPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 412 (552)
Q Consensus 343 ~~~~~~~~~~~~~A~~~~~~al~------~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 412 (552)
.+......++.++++..|...+. .++. .......+|.+|...|+.++-....+..-........+.....
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKl 89 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKL 89 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHhHhhccCch---------HHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhh
Q 008818 413 VSRIKDAERSQEPT---------EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 483 (552)
Q Consensus 413 ~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 483 (552)
...+-+........ +...|+..+-...++. ..-..+..+|...++|.+|+......+.+...
T Consensus 90 vR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq---------~Learli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 90 VRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQ---------SLEARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred HHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q ss_pred --------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 484 --------CAGAGESAFLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 484 --------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
..+..-..+|+...+..+|...+..|-..... .+..=..-|.++....+|.-|..+|=+|++=+.
T Consensus 161 lDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 161 LDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred cccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Q ss_pred c
Q 008818 549 S 549 (552)
Q Consensus 549 ~ 549 (552)
+
T Consensus 241 s 241 (411)
T KOG1463|consen 241 S 241 (411)
T ss_pred c
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.00 E-value=14 Score=33.41 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCC
Q 008818 230 LEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGD 297 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 297 (552)
-...+..+.+++..... ...+...+|..|+..|++++|+++|+.+...... ...++..+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 34556666666654332 2345567999999999999999999999655322 24567788889999999
Q ss_pred HHHHHHHHHHHH
Q 008818 298 MEQSAKCFQDLI 309 (552)
Q Consensus 298 ~~~A~~~~~~al 309 (552)
.+..+.+.-+.+
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 988887765543
No 404
>PF12854 PPR_1: PPR repeat
Probab=81.94 E-value=3.4 Score=23.71 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 008818 516 AAHIWANLANAYYLTGDHRSSGKCLEK 542 (552)
Q Consensus 516 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 542 (552)
+...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456778888888888888888888875
No 405
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.68 E-value=31 Score=29.08 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----C-
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILL-----KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----G- 296 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g- 296 (552)
.+|++|.+.|+.--+.+ ..+...+.+|..++ ..++...|+..|..+-. .+.+.+...+|.++..- +
T Consensus 49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence 45666666666554433 33556666666544 34688999999998876 46788889999888643 2
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc---ccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 297 -DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 297 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
+.++|++++.++-.+ ++..+.+.|...++........ ..+.-...+..+.-.++.+.|.++--++-+++ ++.
T Consensus 126 pd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~ 201 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQ 201 (248)
T ss_pred CCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChH
Confidence 367999999998765 4566666777777643222211 12333445566666778888888888877663 455
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHhh
Q 008818 373 IWANLANAYYL----TGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 373 ~~~~la~~~~~----~~~~~~A~~~~~~al~~ 400 (552)
+..++.+.|.. -++-++|..+-.++.++
T Consensus 202 aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 202 ACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 56666665543 12455666666666554
No 406
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.54 E-value=43 Score=31.13 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=78.3
Q ss_pred hhHHhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcc
Q 008818 134 SREEKVSSLKTGLVHVARK--MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 211 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 211 (552)
..++.+++..+.++.+-+. ...-.+++...|..|.+.|+.+.|++.+++..+.... +|
T Consensus 79 ~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs-------------------~g- 138 (393)
T KOG0687|consen 79 ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS-------------------LG- 138 (393)
T ss_pred hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh-------------------cc-
Confidence 3456667777777666555 3344678999999999999999999999987764210 00
Q ss_pred cccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHH
Q 008818 212 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNL 288 (552)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l 288 (552)
..-+-.-....+|.+|....-..+.++..+..++...++. ......
T Consensus 139 -------------------------------~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~ 187 (393)
T KOG0687|consen 139 -------------------------------HKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQ 187 (393)
T ss_pred -------------------------------cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHH
Confidence 0001122344566666666555555555555555544321 223344
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Q 008818 289 GIAYFQSGDMEQSAKCFQDLILKD 312 (552)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~ 312 (552)
|.......++.+|-..|-.++...
T Consensus 188 Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 188 GLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHhHHHHHHHHHHHcccc
Confidence 556666777778877777776543
No 407
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.12 E-value=8.9 Score=30.25 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=37.9
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 134 SREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
...+.-++..+.+..+.+.+..++..+..+|.+|.+.|+..+|-+.+++|.+.
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34555666667776666666778999999999999999999999999999875
No 408
>PF13041 PPR_2: PPR repeat family
Probab=80.83 E-value=7 Score=24.69 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4567889999999999999999999999876
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.68 E-value=3.6 Score=39.75 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVD---------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
+...|.+++.-+|+|..|++.++.. +++ +-....++.+|-+|..+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778889999999999988753 222 22456789999999999999999999999874
No 410
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.63 E-value=3.8 Score=28.75 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=16.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHh
Q 008818 492 FLDQASAVNVAKECLLAALKA 512 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~ 512 (552)
.--..|+|++|+.+|..+++.
T Consensus 15 ~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 15 DEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhHhhhHHHHHHHHHHHHHH
Confidence 455788899999999888874
No 411
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.46 E-value=11 Score=26.36 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=30.0
Q ss_pred HHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 008818 453 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 526 (552)
Q Consensus 453 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 526 (552)
.+...+.-+-..|++.+|+.. |.+|++.+.+++...|+++.-......+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~-------------------------Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITN-------------------------YKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHH-------------------------HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 344555555666666666555 3556677777777888877654444443
No 412
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.25 E-value=12 Score=26.25 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 160 HFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
+...|.-+-..|++.+|+.+|+++++.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344455555667777777766666654
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.23 E-value=23 Score=34.49 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=40.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHhc
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQA--VVWNT--LGLILLKSGRLQSSISVLSSLLAV 277 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~--la~~~~~~~~~~~A~~~~~~al~~ 277 (552)
.+..++|..|...+......-|... ..+.. .|.-++..-++.+|.+.+++.+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999988533333 23344 455567889999999999998775
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.72 E-value=9.1 Score=33.07 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 499 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.+..++..++.+...| ++.++..++.++...|+.++|....+++..++|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4566677778888888 588888999999999999999999999988887
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.37 E-value=56 Score=29.57 Aligned_cols=56 Identities=11% Similarity=-0.078 Sum_probs=38.8
Q ss_pred cchhHHHhcCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 343 EGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 343 ~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
+|..|...|++++|+++|+.+...... ...+...+..|+...|+.+..+.+.-+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 355555888888888888888655332 34566677788888888887776654443
No 416
>PF13041 PPR_2: PPR repeat family
Probab=77.26 E-value=13 Score=23.35 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAV 277 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 277 (552)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555555555566666666666555543
No 417
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=76.51 E-value=4.4 Score=37.67 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=48.5
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
..+.+..|+.....++..++....+++.++..+....++++|++.++.+....|++......+..
T Consensus 287 k~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 287 KVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred cccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 66667777777777777777777888888888888888888888888888888877655544433
No 418
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.43 E-value=64 Score=34.19 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=37.9
Q ss_pred HhcCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008818 349 QASAVNVAKECLLAALKADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 400 (552)
+...|+-|+...+.- ..+++ -..++...|.-++..|++++|...|-+++..
T Consensus 346 kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 566677787765542 22333 3567788899999999999999999998864
No 419
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.07 E-value=5.7 Score=27.88 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHHHHhc
Q 008818 226 EPEELEEILSKLKESMQS 243 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~ 243 (552)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 457889999999888763
No 420
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.54 E-value=19 Score=32.42 Aligned_cols=138 Identities=15% Similarity=0.258 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCCHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKS--GRLQSSISVLSSLLAVDPNNCDCIGNLGIAY------FQSGDMEQSA 302 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~ 302 (552)
+.-+..+..+++.+|.+...|..+-.++... ..+..-....++.++.++.|..+|...-.+. ....++..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 5667778999999999999998887777665 6688888889999999999988776655555 3444455556
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 303 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
++-..++..++.+..+|...-....... ..|.+- ...-+++-+++.-.++-.+|++..+|..+-.+
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~-----------~~~~vi-sqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRF-----------NRGDVI-SQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHH-----------hhcccc-hHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 6777788889999999887744433211 011111 11135666777777888899998888665443
No 421
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=74.12 E-value=5.6 Score=21.66 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLL 275 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al 275 (552)
|..+-..|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444555555555555555555543
No 422
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=73.76 E-value=8.8 Score=27.28 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=11.1
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 008818 492 FLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~ 511 (552)
.+-..|+.++|+.+|++++.
T Consensus 17 ~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 17 RADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hhhhcCCHHHHHHHHHHHHH
Confidence 44455566666666655554
No 423
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.32 E-value=13 Score=30.07 Aligned_cols=50 Identities=24% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 297 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 297 (552)
.+.....+...+..|++.-|.+..+.++..+|++..+...++.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34556677777888888888888888888888888888888888776654
No 424
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.96 E-value=21 Score=36.02 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=36.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 276 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 276 (552)
.++.|+++.|..+..++ ++..-|..||.+.+..+++..|.++|.++-.
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 45667778877665543 4456788899999999999999999988754
No 425
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=72.81 E-value=6.1 Score=21.51 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 008818 520 WANLANAYYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 520 ~~~lg~~~~~~g~~~~A~~~~~~al~ 545 (552)
|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55666777777777777777776654
No 426
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.34 E-value=7.3 Score=27.46 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHHHHh
Q 008818 226 EPEELEEILSKLKESMQ 242 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~ 242 (552)
..|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45777888888877764
No 427
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.79 E-value=30 Score=33.15 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 373 IWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 373 ~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
+...-|.+...+++|+.|.++|-.+..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444556666677799999998866543
No 428
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.30 E-value=88 Score=29.07 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH--HhhCCCCHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--------CDCIGNLGIAYFQSGDMEQSAKCFQDL--ILKDQNHPA 317 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~~~~ 317 (552)
......||.+|.+.++|..|-+.+. ++..+... ...+..+|.+|...++..+|..+..++ +..+..+..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Q ss_pred HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 318 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
....+-.++ ++++...++|-+|...|.+...
T Consensus 182 Lqie~kvc~-----------------ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 182 LQIEYKVCY-----------------ARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
No 429
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.23 E-value=1.6e+02 Score=32.78 Aligned_cols=176 Identities=10% Similarity=-0.028 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH----------------------HHHHhHhhccCchHH
Q 008818 371 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV----------------------SRIKDAERSQEPTEQ 428 (552)
Q Consensus 371 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~----------------------~~l~~~~~~~~~~~~ 428 (552)
+...+.+|.+|...|+..+|+.+|.+|..-..... +...+.. .++....+..+....
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 44567788888889999999999988875433222 2221111 111111111111111
Q ss_pred HhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc-hhhhhhhhHHHHHHhhhhHH-------
Q 008818 429 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK-MEECAGAGESAFLDQASAVN------- 500 (552)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~la~~~~~~~~~~------- 500 (552)
.+...+-+...++......|..+..+..+=..+...|.+-+|+......-+. .....+..+-.++++.|.++
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpf 1078 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPF 1078 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCc
Confidence 2223344445566666666667777777888888999999998877664332 22233446666777777642
Q ss_pred -----HHHH-HHHHHHHhCCCc-HHHHHHHHHHHHHcCChhHHHH-HHHHHHHHh
Q 008818 501 -----VAKE-CLLAALKADPKA-AHIWANLANAYYLTGDHRSSGK-CLEKVLMVY 547 (552)
Q Consensus 501 -----~A~~-~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~-~~~~al~l~ 547 (552)
+-.. .++++-...|-. ...|..|--.+...+++.+|.. .|+.+..+-
T Consensus 1079 igl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1079 IGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred cchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 3333 344444444433 3444445555678888887765 566666553
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=91 Score=29.13 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 320 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 320 (552)
-.+++.+.|..|.+.|+.+.|.+.+++..+..- +-.-....+|..|....-..+.++-.+..++...+ .+- .
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD-WeR-r 180 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD-WER-R 180 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-hhh-h
Confidence 367999999999999999999999887765421 22234456677776655555555555555554332 222 1
Q ss_pred HHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 321 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
+.-.+|. |.......++.+|-..|...+.....
T Consensus 181 NRlKvY~----------------Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 181 NRLKVYQ----------------GLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhHHHHH----------------HHHHHHHHhHHHHHHHHHHHcccccc
Confidence 2223333 44445788899999999988876543
No 431
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=69.20 E-value=27 Score=33.87 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=41.1
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 274 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 274 (552)
..+.+-+|+..++.++..+|.+......+..+|...|-...|...|...
T Consensus 195 ~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 195 DSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3466778888888889999999888888999999999999998888653
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.17 E-value=53 Score=34.28 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHHHhhcccccccccccccchhHHHhcCHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA------LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 354 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (552)
.++.-.++-..|....+|+.-++..+..-. -|+.... .+.++-++..+ .+-|+-+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRR------------------Nr~GDRa 260 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRR------------------NRPGDRA 260 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhccc------------------CCCccHH
Confidence 356667777788888888877776665433 3432111 11111111111 1578889
Q ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHH---------cCChHHHHHHHHHHHhhCCCCc
Q 008818 355 VAKECLLAALKAD-PKAAHIWANLANAYYL---------TGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 355 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+|+...-.+++.. |-.++.+...|.+|.. .+..+.|+++|+++++..|...
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 9999888888764 3356667677777753 3556789999999999999753
No 433
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.92 E-value=8.2 Score=27.16 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=15.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHh
Q 008818 491 AFLDQASAVNVAKECLLAALKA 512 (552)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~ 512 (552)
.-.-..|+|++|..+|..+++.
T Consensus 14 ve~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 14 LEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 3455668888888888877763
No 434
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.55 E-value=19 Score=31.01 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 353 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
....++..++.++..|+ +.++..++.++...|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45566777788888886 899999999999999999999999999999994
No 435
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=67.91 E-value=1.7e+02 Score=31.15 Aligned_cols=233 Identities=13% Similarity=0.055 Sum_probs=141.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCcccc
Q 008818 144 TGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 223 (552)
Q Consensus 144 ~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (552)
.-++.-+.+++.+...+..|-.+++..|++++-...-.++.++.|-+ |..+ ..++.-.....
T Consensus 100 ~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~------~~lW-l~Wl~d~~~mt----------- 161 (881)
T KOG0128|consen 100 RTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP------PHLW-LEWLKDELSMT----------- 161 (881)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC------hHHH-HHHHHHHHhhc-----------
Confidence 34445555788888999999999999999988777777777765532 2211 11111111111
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLI-------LLKSGRLQSSISVLSSLLAVDPN-------NCDCIGNLG 289 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-------~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la 289 (552)
..++-.++...|++++... +.+..|...+.. +...++++.-...|.+++..-.. ....+..+-
T Consensus 162 --~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e 238 (881)
T KOG0128|consen 162 --QSEERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFE 238 (881)
T ss_pred --cCcchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHH
Confidence 2255688999999998533 344455544443 34456788888889888875221 234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH-------HHHH
Q 008818 290 IAYFQSGDMEQSAKCFQDLILKDQNHPAAL-INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK-------ECLL 361 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-------~~~~ 361 (552)
..|...-..++-+.++.+.+... -+..+. ..+...... -.......+++.|. ..++
T Consensus 239 ~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~---------------h~~~~~~~~~~~a~~~l~~~~~~~e 302 (881)
T KOG0128|consen 239 VTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKA---------------HVYDVETKKLDDALKNLAKILFKFE 302 (881)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhc---------------chHHHHhccHHHHHHHHHHHHHHHH
Confidence 66666666677888888877654 222211 011111000 00011233344443 3455
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 362 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 362 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
+.++..|.....|..+-......|+.-.-...+++++.-.+.+...|...+.
T Consensus 303 ~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~ 354 (881)
T KOG0128|consen 303 RLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGV 354 (881)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhh
Confidence 5555666666677777788888999988888999999888877777765543
No 436
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.60 E-value=16 Score=29.56 Aligned_cols=50 Identities=20% Similarity=0.019 Sum_probs=39.1
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH
Q 008818 486 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 535 (552)
....+...+..|++.-|.+....++..+|++..+...++.++.++|.-.+
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44455567789999999999999999999999999999999988876544
No 437
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=67.49 E-value=11 Score=21.00 Aligned_cols=28 Identities=14% Similarity=-0.029 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
.|..+-..|.+.|++++|...|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4677788899999999999999998754
No 438
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=67.23 E-value=12 Score=20.84 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 520 WANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 520 ~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
|..+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 556667788888888888888876543
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.20 E-value=64 Score=25.51 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=21.1
Q ss_pred HHHHHHHHHHh--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 232 EILSKLKESMQ--SDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 274 (552)
Q Consensus 232 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 274 (552)
++...|..+.. +.-..+..|...|..+...|++++|.++|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 44444444433 22334455555555555555555555555544
No 440
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=65.69 E-value=1.2e+02 Score=28.50 Aligned_cols=166 Identities=16% Similarity=0.062 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------------------------CchHHHHHHHHHHHHHhhccc
Q 008818 139 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG--------------------------QPLKAVSSYEKAEEILLRCEA 192 (552)
Q Consensus 139 ~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g--------------------------~~~~A~~~~~~al~~~p~~~~ 192 (552)
..++...-.-+..+-|..++++-.++.+.++.. -++++...+.+++...-
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~---- 287 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR---- 287 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC----
Confidence 344444444555688999999988888776532 25677777777776420
Q ss_pred cccchhHH-HHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008818 193 DIARPELL-SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 271 (552)
Q Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 271 (552)
..|..+ ..+...+..+.. -..-++..-..+|.-.....|+ +.+-.+.+.......-...++...
T Consensus 288 --pGPYqlqAAIaa~HA~a~~------------aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~v 352 (415)
T COG4941 288 --PGPYQLQAAIAALHARARR------------AEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMV 352 (415)
T ss_pred --CChHHHHHHHHHHHHhhcc------------cCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHH
Confidence 012211 111122222211 1233556666667666666665 455556666666666667777777
Q ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008818 272 SSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 323 (552)
Q Consensus 272 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 323 (552)
+..... -......+...|..+.++|+.++|...|++++.+.++..+..+...
T Consensus 353 e~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 353 EALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 665544 2244567788899999999999999999999999988877655444
No 441
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=64.89 E-value=14 Score=25.46 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=9.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHH
Q 008818 489 ESAFLDQASAVNVAKECLLAA 509 (552)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~a 509 (552)
.|.-+-..|++++|+.+|.++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444455555554444
No 442
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.85 E-value=2e+02 Score=30.78 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=41.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
++.+..+.+.++.+++.. .++++..|..+-.++...+..+.-.+...++++.+..
T Consensus 714 ~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~ 768 (933)
T KOG2114|consen 714 YFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEM 768 (933)
T ss_pred HHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHh
Confidence 566777778887777654 4557788888888888888888777788888776644
No 443
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=64.83 E-value=40 Score=26.26 Aligned_cols=66 Identities=18% Similarity=0.099 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH----Hhh
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPN---------------NCDCIGNLGIAYFQSGDMEQSAKCFQDL----ILK 311 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~ 311 (552)
+..+|...++.+++-.++-.|++|+.+..+ ......+||..+..+|+.+-.+++++-+ +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888888999999999999998876221 1235678999999999999999998755 445
Q ss_pred CCCCH
Q 008818 312 DQNHP 316 (552)
Q Consensus 312 ~p~~~ 316 (552)
-|..+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 56544
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.71 E-value=1.2e+02 Score=27.92 Aligned_cols=104 Identities=15% Similarity=0.068 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 321 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 321 (552)
.+++.++|..|.+.++.+.+.+.+.+.++..- +-.-....+|.+|..+.-.++.++..+..++...+. +- .+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW-eR-rN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW-ER-RN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH-Hh-hh
Confidence 67899999999999999999998887766422 112334566777766666677777777777654332 11 12
Q ss_pred HHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 322 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
.-.+|. |.......++.+|-..+...+.....
T Consensus 193 RyK~Y~----------------Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 193 RYKVYK----------------GIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hHHHHH----------------HHHHHHHHhhHHHHHHHHHHhccccc
Confidence 222222 33334677788888888877765443
No 445
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=63.81 E-value=40 Score=32.63 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 262 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 262 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
...-+|+-.++.++..+|.+......+..+|..+|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34568899999999999999999999999999999999999999653
No 446
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=63.63 E-value=15 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=16.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHh
Q 008818 490 SAFLDQASAVNVAKECLLAALKA 512 (552)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~ 512 (552)
|.-.-..|++++|+.+|..+++.
T Consensus 13 Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 13 AVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 33556778888888888877753
No 447
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=63.21 E-value=77 Score=25.39 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=24.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 259 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 259 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
...+.....+.+++.++..++.++..+..+..+|... +..+.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3345556666666666665555555555555555543 2333344433
No 448
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.66 E-value=20 Score=25.26 Aligned_cols=27 Identities=19% Similarity=-0.113 Sum_probs=18.0
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHh
Q 008818 486 GAGESAFLDQASAVNVAKECLLAALKA 512 (552)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (552)
+...|.-+-+.|+|++|+.+|..+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334555666777777777777777654
No 449
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=62.51 E-value=19 Score=20.01 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLL 275 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al 275 (552)
|..+..++.+.|+++.|...|+...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444445555555555555554443
No 450
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.48 E-value=13 Score=32.82 Aligned_cols=93 Identities=11% Similarity=0.127 Sum_probs=56.7
Q ss_pred ccCchhHHHHHHHHHHHHhcC---cch---------HHHHHHHHHHHHHcCCHHH-H-HHHHHHHHhc--CCCC--HHHH
Q 008818 224 ELEPEELEEILSKLKESMQSD---TRQ---------AVVWNTLGLILLKSGRLQS-S-ISVLSSLLAV--DPNN--CDCI 285 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~---p~~---------~~~~~~la~~~~~~~~~~~-A-~~~~~~al~~--~p~~--~~~~ 285 (552)
.+..|+++.|++...-+++.+ |+. ++-....+......|+.-+ . ...+..+..- -|+. ...+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 678999999999999999865 321 1122233444455555211 1 1222222211 1222 3456
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCH
Q 008818 286 GNLGIAYF---------QSGDMEQSAKCFQDLILKDQNHP 316 (552)
Q Consensus 286 ~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 316 (552)
...|..+. ..++...|+.++++++.++|+..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 66777773 45688899999999999998754
No 451
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.34 E-value=75 Score=30.63 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
-.++..+|.-|...|+++.|+..|-++-..... ....+.++-.+-..+|+|..-..+-.++...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 347778999999999999999999996555432 3567888888889999999888888777654
No 452
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.90 E-value=1.1e+02 Score=26.83 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=57.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 255 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 255 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
..-+.+.+..++|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++..-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 3456778899999999999999999999999999999999999999999999999999987543
No 453
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=61.40 E-value=1.4e+02 Score=27.89 Aligned_cols=141 Identities=13% Similarity=0.009 Sum_probs=83.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-------------HHHHHHH
Q 008818 260 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL----KDQNH-------------PAALINY 322 (552)
Q Consensus 260 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~-------------~~~~~~l 322 (552)
.++++.+.++..++.+..+|-..+.++..+.++.++|. +.+.......+. .-|.- ......+
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL 189 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWL 189 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHH
Confidence 55677888888888888888888888888888888884 444444433332 12211 1111111
Q ss_pred HHHHHHhhccccc---c------cccccccchhHHHhcCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHH
Q 008818 323 AALLLCKYGSVLA---G------AGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSS 390 (552)
Q Consensus 323 ~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A 390 (552)
...-....+.... . .......+......+.++.|+..++..+...+. .......++.++...|.++-|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA 269 (301)
T TIGR03362 190 AQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA 269 (301)
T ss_pred HhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1100000000000 0 000011234455788999999999986554333 345567788999999999999
Q ss_pred HHHHHHHHhhC
Q 008818 391 GKCLEKAAKLE 401 (552)
Q Consensus 391 ~~~~~~al~~~ 401 (552)
...|+...+.-
T Consensus 270 ~~ll~~L~~~~ 280 (301)
T TIGR03362 270 QQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 454
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.35 E-value=34 Score=30.30 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcccccc--chhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHH
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIA--RPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 236 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 236 (552)
++...-...+..|+|+.|++...-||+..-..++... .|.+. +.-....+......|.. ++. .+ ...
T Consensus 85 Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--aeev~~~A~~~~~ag~~-----~e~-~~---~~~ 153 (230)
T PHA02537 85 VLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--AEEVANAALKAASAGES-----VEP-YF---LRV 153 (230)
T ss_pred eeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--HHHHHHHHHHHHHcCCC-----CCh-HH---HHH
Confidence 3444445567889999999999999987422211111 11111 11111112111112221 000 01 111
Q ss_pred HHHHHh--cCcch--HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCC
Q 008818 237 LKESMQ--SDTRQ--AVVWNTLGLILL---------KSGRLQSSISVLSSLLAVDPNN 281 (552)
Q Consensus 237 ~~~al~--~~p~~--~~~~~~la~~~~---------~~~~~~~A~~~~~~al~~~p~~ 281 (552)
+..... .-|+. +..+...|..+. ..++...|+.++++|+.++|..
T Consensus 154 ~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 154 FLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 222211 11222 445666788774 4568889999999999999874
No 455
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=59.50 E-value=15 Score=26.20 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=11.4
Q ss_pred CCchHHHHHHHHHHHH
Q 008818 171 GQPLKAVSSYEKAEEI 186 (552)
Q Consensus 171 g~~~~A~~~~~~al~~ 186 (552)
+-|+.|..+..+|+..
T Consensus 3 ~~~~~A~~~I~kaL~~ 18 (79)
T cd02679 3 GYYKQAFEEISKALRA 18 (79)
T ss_pred hHHHHHHHHHHHHhhh
Confidence 3467777777777775
No 456
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=58.20 E-value=1.6e+02 Score=27.52 Aligned_cols=166 Identities=12% Similarity=0.016 Sum_probs=86.3
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH----hhCCCCcchHHHHHHHHHHhHhhccC
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA----KLEPNCMSTRYAVAVSRIKDAERSQE 424 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~l~~~~~~~~ 424 (552)
..+++.+.++..++.+..+|--.+.++..+.++.++| ++.+....+..+ ...|.-....|
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F--------------- 174 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKF--------------- 174 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhccc---------------
Confidence 4556778888888888888888888999999999999 566655554433 33443221111
Q ss_pred chHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc-hhhhhhhhHHHHHHhhhhHHHHH
Q 008818 425 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK-MEECAGAGESAFLDQASAVNVAK 503 (552)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~la~~~~~~~~~~~A~ 503 (552)
.+.....+......+...-...+.-..+ ....... .+......-+..+...+..+.|+
T Consensus 175 ------------------~DGtPFad~~T~~WL~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al 233 (301)
T TIGR03362 175 ------------------SDGTPFADDETRAWLAQHATRSNAASVA---PVAEVGEESDWEELREEARALAAEGGLEAAL 233 (301)
T ss_pred ------------------CCCCCCCCHHHHHHHHhccccccccccc---ccccCcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 1111111111111111000000000000 0000000 00000111233566677788888
Q ss_pred HHHHHHHHhCCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccC
Q 008818 504 ECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSN 551 (552)
Q Consensus 504 ~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 551 (552)
..++..+...++ .....+.++.++...|.++-|...|++..+.....+
T Consensus 234 ~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~ 284 (301)
T TIGR03362 234 QRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLG 284 (301)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 888776553332 234456677888888888888888888777665443
No 457
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.11 E-value=25 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=13.2
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHH
Q 008818 488 GESAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~ 511 (552)
..|.-+-..|++++|+.+|.++++
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555666666666655543
No 458
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=58.10 E-value=19 Score=25.39 Aligned_cols=15 Identities=20% Similarity=-0.071 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHHH
Q 008818 173 PLKAVSSYEKAEEIL 187 (552)
Q Consensus 173 ~~~A~~~~~~al~~~ 187 (552)
.++|+..+.+|++.+
T Consensus 3 l~~Ai~lv~~Av~~D 17 (75)
T cd02684 3 LEKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888888763
No 459
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.89 E-value=2.5e+02 Score=29.58 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=15.2
Q ss_pred HHHHHHH--HHHcCChhHHHHHHHH
Q 008818 520 WANLANA--YYLTGDHRSSGKCLEK 542 (552)
Q Consensus 520 ~~~lg~~--~~~~g~~~~A~~~~~~ 542 (552)
+..+..+ ++..|++++|++.+++
T Consensus 506 Ll~L~~ff~~~~~g~~~~AL~~i~~ 530 (613)
T PF04097_consen 506 LLDLAEFFDLYHAGQYEQALDIIEK 530 (613)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444444 3788999999988775
No 460
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=57.86 E-value=52 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEILL 188 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (552)
-+..+|...++.+++-.++-.|++|+.+..
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se 32 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSE 32 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999998743
No 461
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.84 E-value=5.4e+02 Score=33.11 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=45.0
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC----hhHHHHHHHHHHHHhcc
Q 008818 483 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGD----HRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~----~~~A~~~~~~al~l~~~ 549 (552)
...+...|....+.|+.++|-..|..|++++-..+.+|...|..... .+. -..|+.+|=+|...+.+
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~ 2886 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS 2886 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc
Confidence 34455667778888888888888888888888778888777765422 222 13466666666665544
No 462
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=56.36 E-value=55 Score=25.79 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=27.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 008818 492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 529 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 529 (552)
.++..-+.+.|...|+..++..|++..++..+-...--
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 44455566899999999999999999988877766543
No 463
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.22 E-value=21 Score=25.06 Aligned_cols=14 Identities=36% Similarity=0.164 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHH
Q 008818 173 PLKAVSSYEKAEEI 186 (552)
Q Consensus 173 ~~~A~~~~~~al~~ 186 (552)
++.|+.++.+|++.
T Consensus 3 ~~~A~~l~~~Av~~ 16 (75)
T cd02678 3 LQKAIELVKKAIEE 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 46778888888775
No 464
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=55.87 E-value=39 Score=35.35 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPN----NCDCIGNLGIAYFQ--SGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
.-|+.++..+++..|.--|..++.+-|. ......+.+.++.. .|+|..++.-..-++...|....++...+..|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 3477788888888888778888877763 24455666666655 46788888888888888888777777666655
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 381 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 381 (552)
. ..+.++-|++...-.....|.+..+.......+
T Consensus 138 ~---------------------al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 138 E---------------------ALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred H---------------------HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 5 666688888887777777888755544444333
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.12 E-value=1.7e+02 Score=31.59 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHhhc----cccccch-hHHHHHHHhhhhcccccccCCCccccccCchhHHHH-
Q 008818 160 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRC----EADIARP-ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI- 233 (552)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A- 233 (552)
-...|.-....|++.+|++.|+.++-.-|-- ....... .....+. .+..|+.... ..+-+..+..+++
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~-eYi~gL~~E~-----~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICR-EYIVGLSVEL-----ERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHH-HHHhhheeee-----eecccCCchHHHHH
Confidence 3455666778999999999999998654321 1111111 1111110 1122221111 1113445556666
Q ss_pred -HHHHHHHHhcCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 008818 234 -LSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 284 (552)
Q Consensus 234 -~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 284 (552)
+..|=.-..+.|.+.. ++..-..++++.+++..|-....+.+++.|..+.+
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 3333333455554433 34444567788888888888888888888866554
No 466
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=54.88 E-value=25 Score=19.90 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHc----CChhHHHHHHHHHHH
Q 008818 518 HIWANLANAYYLT----GDHRSSGKCLEKVLM 545 (552)
Q Consensus 518 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~ 545 (552)
.+.+.||.+|..- .+..+|..+|+++-+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 4566777776532 377788888887754
No 467
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=54.58 E-value=24 Score=24.81 Aligned_cols=15 Identities=20% Similarity=-0.155 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHHHH
Q 008818 173 PLKAVSSYEKAEEIL 187 (552)
Q Consensus 173 ~~~A~~~~~~al~~~ 187 (552)
+.+|+..+.+|++.+
T Consensus 3 l~~A~~l~~~Ave~d 17 (75)
T cd02677 3 LEQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457888888888763
No 468
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=54.17 E-value=27 Score=20.27 Aligned_cols=28 Identities=29% Similarity=0.193 Sum_probs=15.2
Q ss_pred HHHHHHH--HHHHHcC-----ChhHHHHHHHHHHH
Q 008818 518 HIWANLA--NAYYLTG-----DHRSSGKCLEKVLM 545 (552)
Q Consensus 518 ~~~~~lg--~~~~~~g-----~~~~A~~~~~~al~ 545 (552)
.+.+.+| .+|..-. ++++|+.+|+++-+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4566666 4333222 35667777766654
No 469
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=53.79 E-value=69 Score=32.86 Aligned_cols=78 Identities=6% Similarity=0.167 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
...++.+....+.-+......+...+..+..+...++.++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344566666777666666666677777888888889999999999999999888 667777888888887777777665
No 470
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.41 E-value=1.6e+02 Score=31.97 Aligned_cols=178 Identities=11% Similarity=0.025 Sum_probs=104.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHH-------HHHHHHHHcCCH--------HHHHHHHHHHHhcCCCCHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWN-------TLGLILLKSGRL--------QSSISVLSSLLAVDPNNCDCIGNL 288 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------~la~~~~~~~~~--------~~A~~~~~~al~~~p~~~~~~~~l 288 (552)
+..-|.+..|...|....+. +.+-.+|. +.+..++-+++- +.|+..|....+..+.-..+....
T Consensus 186 ~~~f~h~~~a~~~y~stkrd-~~nd~am~~~a~alEm~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~~~~A~rc~l~~ 264 (960)
T KOG1938|consen 186 LFMFGHPNLAFDAYHSTKRD-FNNDKAMVYYAGALEMRSLSAFVQPDATQFPSQYMENAFPLYRLILKNYQDANRCVLNS 264 (960)
T ss_pred hhhhccccchhhhhhhhhcc-hhhhhHHhHhhhhhhhhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhhccchhhhccCc
Confidence 44445556666666655432 22222222 223333333332 347777777777766667778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHH--hhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 289 GIAYFQSGDMEQSAKCFQDLILKDQNHPAA-LINYAALLLC--KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
+.++...|.+.+|.+.+-+....+++...+ +..++..++. +.............-|..+...|....|+.+|.+++.
T Consensus 265 aei~k~~~lh~eaa~~~~r~~see~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~ 344 (960)
T KOG1938|consen 265 AEILKFLGLHKEAAEALARETSEEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIP 344 (960)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCcCchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhh
Confidence 999999999999999988887766653333 3333333332 1000001112222345666777889999999999998
Q ss_pred cCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 366 ADPK------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 366 ~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
..+. ....++.++..|. +...+.|-..+.+++...+.
T Consensus 345 v~~~~~ws~~edh~~f~i~~~y~-l~~~D~a~~~f~~~i~~~~k 387 (960)
T KOG1938|consen 345 VLKKPTWSFAEDHLYFTILHVYL-LCQEDDADEEFSKLIADCMK 387 (960)
T ss_pred hcCCCCcchhHHhHHHhHHHhhh-hhcchhHHHHHHHHHhhhhh
Confidence 7655 2345666666443 33356677777776655443
No 471
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.33 E-value=1.2e+02 Score=24.05 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008818 501 VAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 544 (552)
Q Consensus 501 ~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 544 (552)
++...|+.... +.-..+..|...|..+...|++++|.++|++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 77777776665 455678899999999999999999999999875
No 472
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=51.72 E-value=36 Score=23.36 Aligned_cols=17 Identities=6% Similarity=0.294 Sum_probs=8.1
Q ss_pred HHcCCHHHHHHHHHHHH
Q 008818 259 LKSGRLQSSISVLSSLL 275 (552)
Q Consensus 259 ~~~~~~~~A~~~~~~al 275 (552)
-..|++++|+.+|.+++
T Consensus 16 D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHTTSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 33455555555544443
No 473
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=50.78 E-value=39 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=9.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 008818 490 SAFLDQASAVNVAKECLLAAL 510 (552)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al 510 (552)
|..+-..|++++|+.+|.+++
T Consensus 15 Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 15 ALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 334444455555555555443
No 474
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=50.64 E-value=2.3e+02 Score=32.79 Aligned_cols=150 Identities=18% Similarity=0.146 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccc---ccCCC-------------
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE---SSGDN------------- 219 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~------------- 219 (552)
.......+|..+...|++.+|+..|..|+...-.. .|++=.+.++.+++.+.. ..|..
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~------~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~ 314 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS------NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPI 314 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc------CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCC
Confidence 45677889999999999999999999999875332 122211222222211100 00000
Q ss_pred -------c-----------------------------cccccCchhHHHHHHHHHHHHhc----Ccc--hHHHHHHHHHH
Q 008818 220 -------S-----------------------------LDKELEPEELEEILSKLKESMQS----DTR--QAVVWNTLGLI 257 (552)
Q Consensus 220 -------~-----------------------------~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~~ 257 (552)
. .-...-...+++|+.+|.++... .|. ..++...++.+
T Consensus 315 ~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~ 394 (1185)
T PF08626_consen 315 SSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARF 394 (1185)
T ss_pred CCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHH
Confidence 0 00011234678888899888632 232 24566667777
Q ss_pred HHHcC--------------------CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 258 LLKSG--------------------RLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 258 ~~~~~--------------------~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
+.... .-.++.+...+++..... ....+..+|.+|..+|-..++.-+.+.++..
T Consensus 395 l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 395 LVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 76666 677788888888765432 2567889999999999888887777776643
No 475
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=50.54 E-value=34 Score=32.75 Aligned_cols=49 Identities=14% Similarity=0.016 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhh------------HHHHHHHHHHHHHhC
Q 008818 465 HEVAAAFETEENELSKMEECAGAGESAFLDQASA------------VNVAKECLLAALKAD 513 (552)
Q Consensus 465 ~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~ 513 (552)
.-+..|+.++.++.....+..|..+|.+++.+|+ |.+|...+.+|-...
T Consensus 332 ~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 332 ELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 3456788888888888888999999999998888 677777777776543
No 476
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.37 E-value=3.4e+02 Score=28.82 Aligned_cols=140 Identities=9% Similarity=-0.070 Sum_probs=76.3
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHH
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 428 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~ 428 (552)
..++++.+...+...-..........+.+|.++...|+.++|...|+++.. +. ..+-.++...++.........
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa~~Lg~~~~~~~~~-- 397 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAAQRLGEEYPLKIDK-- 397 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHHHHcCCCCCCCCCC--
Confidence 677888777777765443345678899999999999999999999999854 22 233344444443221110000
Q ss_pred HhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008818 429 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLL 507 (552)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (552)
.... ...+ .. ..-...+..+...|....|.......+...+......++......|.++.++....
T Consensus 398 ~~~~----~~~~-------~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 398 APKP----DSAL-------TQ--GPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCch----hhhh-------cc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0000 0000 00 11233444555556666666555554444434444455555556666666555443
No 477
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.79 E-value=1.3e+02 Score=23.81 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=34.7
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (552)
.||....+|...+... +++.+.|..+... ....+..|...|..+...|++.+|.+.|+.
T Consensus 64 nD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 64 NDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4555555666666542 2345555555443 334455666677777777777777777653
No 478
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=49.24 E-value=30 Score=24.36 Aligned_cols=14 Identities=29% Similarity=0.010 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHH
Q 008818 173 PLKAVSSYEKAEEI 186 (552)
Q Consensus 173 ~~~A~~~~~~al~~ 186 (552)
+++|+.+..+|++.
T Consensus 5 ~~~A~~li~~Av~~ 18 (77)
T smart00745 5 LSKAKELISKALKA 18 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777778888775
No 479
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.09 E-value=70 Score=23.82 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 517 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 517 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
+..+-.||.+|...|+.+.|..-|+.--.++|.|
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 4566667777777777777777776666666654
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.94 E-value=1.7e+02 Score=24.94 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCcchH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 008818 230 LEEILSKLKESMQSDTRQA--------VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 298 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~~~--------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 298 (552)
++.|+..++..-+..+..- -+-.....++++.|.+++|.+.+++... +|++......|..+-.....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 5778877777655444311 1222345678899999999999999988 787766666666555444433
No 481
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.40 E-value=2.2e+02 Score=26.19 Aligned_cols=124 Identities=9% Similarity=0.049 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhccc
Q 008818 263 RLQSSISVLSSLLAV-DP-----NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSV 333 (552)
Q Consensus 263 ~~~~A~~~~~~al~~-~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~ 333 (552)
.-++-++.+.+.++. .. .-.+++.++|..|.+.++.+.+.++..+.++..-.. .+.++....
T Consensus 90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiR--------- 160 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIR--------- 160 (412)
T ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHH---------
Confidence 334455555444432 11 236789999999999999999999998887643211 111111111
Q ss_pred ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
+|.+|....-.++.++..+..++...+ .-......|.......++.+|...+-.++......
T Consensus 161 ---------lg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 161 ---------LGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred ---------HHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 233333444556666666666666544 11233345666777888999999988887655443
No 482
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=47.76 E-value=2.7e+02 Score=27.02 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHH--HHcCCHHHHHHHHHH
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPN-----NCDCIGNLGIAY--FQSGDMEQSAKCFQD 307 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~--~~~g~~~~A~~~~~~ 307 (552)
.+..+++.++|..|...|..++...+. ....+..+..+| +..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 556788999999999999999987542 233445555444 567789999999986
No 483
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.58 E-value=1.1e+02 Score=24.15 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008818 246 RQAVVWNTLGLILLKSGRLQSSISVLSS 273 (552)
Q Consensus 246 ~~~~~~~~la~~~~~~~~~~~A~~~~~~ 273 (552)
..+..|...|..+...|++.+|.++|+.
T Consensus 97 ~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 97 KLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455666678888888999999888864
No 484
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.42 E-value=96 Score=23.14 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=42.0
Q ss_pred hHHhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhc
Q 008818 135 REEKVSSLKTGLVHVARKMPK-NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC 190 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (552)
.+..+...++.++++-..+-. -+-.+..||.+|.+.|+-+.|..-|+.--.+.|+.
T Consensus 49 ~e~Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 49 KEAQTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 345566677777776555433 34578899999999999999999999877776653
No 485
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.40 E-value=49 Score=23.22 Aligned_cols=20 Identities=25% Similarity=0.027 Sum_probs=9.5
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 008818 491 AFLDQASAVNVAKECLLAAL 510 (552)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al 510 (552)
.-.-..|++++|+.+|.+++
T Consensus 14 v~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33444445555555555443
No 486
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.84 E-value=2.6e+02 Score=26.48 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=46.9
Q ss_pred HHHHHHhcCcchHH-HH--HHHHHHHHHcCCHHHHHHHHHHHHhc------------------------------CCCC-
Q 008818 236 KLKESMQSDTRQAV-VW--NTLGLILLKSGRLQSSISVLSSLLAV------------------------------DPNN- 281 (552)
Q Consensus 236 ~~~~al~~~p~~~~-~~--~~la~~~~~~~~~~~A~~~~~~al~~------------------------------~p~~- 281 (552)
.|++..+.-|++.. ++ ..-|.+++..++|.+....|..+-.. +|..
T Consensus 43 ~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~Y 122 (449)
T COG3014 43 AYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIY 122 (449)
T ss_pred HHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhH
Confidence 34444444443332 22 24588888888887776666544211 1111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 282 --CDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 282 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
.-..+.+|.-|....+++.|+--|+++...
T Consensus 123 E~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 123 EGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 224567788889999999999988888754
No 487
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.58 E-value=38 Score=35.47 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=79.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHh
Q 008818 163 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 242 (552)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 242 (552)
-|...++.+++..|.--|..++.+.|.+ +... ........-+.+ .+..+++..++....-++.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~-----~~~~-a~~~~~~~s~~m-----------~~~l~~~~~~~~E~~la~~ 121 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKD-----HHVV-ATLRSNQASCYM-----------QLGLGEYPKAIPECELALE 121 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheecccc-----chhh-hhHHHHHHHHHh-----------hcCccchhhhcCchhhhhh
Confidence 4667777888888887788888776632 1111 111112222233 2344666999999999999
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 290 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 290 (552)
..|....+++..+.+|...+.++-|++...-.....|.+..+-.....
T Consensus 122 ~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 122 SQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred ccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 999999999999999999999999999988888889988554443333
No 488
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=45.51 E-value=2.4e+02 Score=32.61 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhhcch--------hhhhhhhHHHHHHhhh--------------------hHHHHHHHHHHHHHhCCC--
Q 008818 466 EVAAAFETEENELSKM--------EECAGAGESAFLDQAS--------------------AVNVAKECLLAALKADPK-- 515 (552)
Q Consensus 466 ~~~~A~~~~~~~l~~~--------~~~~~~~la~~~~~~~--------------------~~~~A~~~~~~al~~~p~-- 515 (552)
.+++++..|.+..... ..++....+..+.... .-.++..++.+++.....
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l 439 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL 439 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC
Confidence 5678888998865211 1244556666666666 677788888888776543
Q ss_pred ----cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 516 ----AAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 516 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
....+..++.+|...|-..++.-+.+.++..+
T Consensus 440 ~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 440 SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 35788899999999999999988888887766
No 489
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=45.44 E-value=2.5e+02 Score=25.89 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccc-cccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008818 300 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG-AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 378 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 378 (552)
.-...++.-++..|+...++..+|..+....-..... ...............-.+.|...+.+++.++|....+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3556666667778888888877777766431111000 000000111111222345666667777777777666666666
Q ss_pred HHHHHcCCh
Q 008818 379 NAYYLTGDH 387 (552)
Q Consensus 379 ~~~~~~~~~ 387 (552)
.+-...|..
T Consensus 141 ~~s~~fgeP 149 (277)
T PF13226_consen 141 NISAYFGEP 149 (277)
T ss_pred HHHhhcCCc
Confidence 555555544
No 490
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=45.39 E-value=1.1e+02 Score=30.95 Aligned_cols=63 Identities=6% Similarity=0.117 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 248 AVVWNTLGLILLK--SGRLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 248 ~~~~~~la~~~~~--~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
+.++.+||.+-.- ...-..+++.|.+++.. +.....-|..+|-.|++.+++.+|+..+-.+-.
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444332 12235567777777764 233455678889999999999999998887754
No 491
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.58 E-value=53 Score=18.63 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH
Q 008818 353 VNVAKECLLAALKADPKAAHIWANL 377 (552)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~l 377 (552)
++.|..+|++.+...|+ +..|...
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~Wiky 26 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKY 26 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHH
Confidence 44555555555555544 4444433
No 492
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.59 E-value=1.8e+02 Score=28.47 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAV-----------DPNNCDCIGNLGIAYFQSGDM----------EQSAKCFQDLI 309 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al 309 (552)
++..|.+.+....|++|+.++-.|-+. -.+.+-.-..+.+||+.+.+. ..|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 445677788888888888777655332 233444556677888887653 33444444433
Q ss_pred hh---------CCCCHH-HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 310 LK---------DQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 310 ~~---------~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
.. .+..++ +.+..-.++ .|.+....|+-++|.++++.+..
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LL----------------QGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELL----------------QGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHH----------------HHHHHHHcCCcHHHHHHHHHHHH
Confidence 21 122222 222222222 36677789999999999998754
No 493
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=43.24 E-value=1.7e+02 Score=23.42 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008818 492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 545 (552)
.+...|+-++-.+.+....+.+..++..+..+|.+|.+.|+..+|-+.+++|=+
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 455666666666666666665566789999999999999999999999888754
No 494
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.36 E-value=3.1e+02 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 400 (552)
.+.+.+|.-|....+++.|+--|.++...
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 34566777778888888888888777654
No 495
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.32 E-value=2.8e+02 Score=31.07 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------------------C--HHHHHHHHHHHHHcCCH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---------------------------N--CDCIGNLGIAYFQSGDM 298 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------------------~--~~~~~~la~~~~~~g~~ 298 (552)
+...+.+|.+|...|+..+|+.+|.+|..-... . ...|...-+++...+..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 445677899999999999999999998653211 1 11233334455556666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc---HHHHH
Q 008818 299 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA---AHIWA 375 (552)
Q Consensus 299 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 375 (552)
+.+++.-.+|++.-|++....-.+-.+.+. .+..+|.+.+|...+ -.+|+. -..+.
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFn-----------------hhldlgh~~qAy~ai----~~npdserrrdcLR 1058 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFN-----------------HHLDLGHWFQAYKAI----LRNPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHH-----------------hhhchhhHHHHHHHH----HcCCcHHHHHHHHH
Confidence 777777777776555443332222222221 122566676665433 235552 34556
Q ss_pred HHHHHHHHcCChH
Q 008818 376 NLANAYYLTGDHR 388 (552)
Q Consensus 376 ~la~~~~~~~~~~ 388 (552)
.+-.+++..|+++
T Consensus 1059 qlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1059 QLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHhccchH
Confidence 6666777776653
No 496
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=42.03 E-value=2.8e+02 Score=25.55 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKSG----------------------RLQSSISVLSSLLAVDPNNCDCIGNLG 289 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~la 289 (552)
.-...++.-++..|++..++..+|..+.... -.+.|...+.+++.++|....+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4566677778889999999998888876532 235566667777777777776666666
Q ss_pred HHHHHcCCHH
Q 008818 290 IAYFQSGDME 299 (552)
Q Consensus 290 ~~~~~~g~~~ 299 (552)
.+-...|+.+
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 6666666554
No 497
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.82 E-value=65 Score=22.68 Aligned_cols=19 Identities=26% Similarity=0.114 Sum_probs=8.6
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 008818 492 FLDQASAVNVAKECLLAAL 510 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al 510 (552)
-.-..|++++|+.+|..++
T Consensus 15 ~~D~~g~y~eA~~lY~~al 33 (75)
T cd02684 15 KKDQRGDAAAALSLYCSAL 33 (75)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3334444444444444443
No 498
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.78 E-value=1.5e+02 Score=22.62 Aligned_cols=50 Identities=24% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 297 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 297 (552)
.......|.+-...|++..|.+...++-+..+...-.+..-+.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
No 499
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.16 E-value=3.5e+02 Score=26.34 Aligned_cols=28 Identities=14% Similarity=-0.138 Sum_probs=23.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 376 NLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 376 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
..+..++..++|..|...|..++...+.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~ 162 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLS 162 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccC
Confidence 3455788999999999999999987654
No 500
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=40.84 E-value=1.8e+02 Score=22.99 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008818 482 EECAGAGESAFLDQASAVNVAKECLLAALKADPKA----------------AHIWANLANAYYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 545 (552)
+...+..+-.++.+.|+.+.-..++++...++.+. ...+..+..+|...|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q ss_pred Hhc
Q 008818 546 VYC 548 (552)
Q Consensus 546 l~~ 548 (552)
.|+
T Consensus 81 ~Y~ 83 (126)
T PF12921_consen 81 KYP 83 (126)
T ss_pred HcC
Done!