Query 008818
Match_columns 552
No_of_seqs 904 out of 4492
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 12:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-40 8.9E-45 324.0 35.8 380 94-531 6-387 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 9.5E-38 3.3E-42 305.8 35.9 348 93-498 39-388 (388)
3 2gw1_A Mitochondrial precursor 100.0 1.9E-35 6.6E-40 300.7 34.1 378 91-549 10-481 (514)
4 2xpi_A Anaphase-promoting comp 100.0 5.8E-35 2E-39 303.0 34.6 382 122-550 150-583 (597)
5 3fp2_A TPR repeat-containing p 100.0 1.5E-34 5.2E-39 295.8 36.7 384 91-549 29-494 (537)
6 2y4t_A DNAJ homolog subfamily 100.0 3.3E-34 1.1E-38 286.6 32.6 353 110-549 14-413 (450)
7 2y4t_A DNAJ homolog subfamily 100.0 8.6E-34 2.9E-38 283.5 34.1 329 143-549 12-361 (450)
8 3ieg_A DNAJ homolog subfamily 100.0 2.4E-33 8.4E-38 271.1 36.1 316 156-549 2-338 (359)
9 3ieg_A DNAJ homolog subfamily 100.0 1.3E-32 4.6E-37 265.9 33.4 314 133-532 13-355 (359)
10 4g1t_A Interferon-induced prot 100.0 1.2E-32 3.9E-37 277.1 29.2 383 136-549 28-462 (472)
11 2xpi_A Anaphase-promoting comp 100.0 1.2E-31 4E-36 278.1 33.9 348 94-528 207-595 (597)
12 3hym_B Cell division cycle pro 100.0 3.2E-31 1.1E-35 253.1 30.2 306 148-534 13-322 (330)
13 2gw1_A Mitochondrial precursor 100.0 1E-31 3.6E-36 273.1 25.7 325 133-549 16-447 (514)
14 1fch_A Peroxisomal targeting s 100.0 6.9E-31 2.4E-35 255.0 22.4 251 231-549 81-362 (368)
15 4g1t_A Interferon-induced prot 100.0 8.9E-31 3E-35 263.3 21.9 388 93-525 57-472 (472)
16 3fp2_A TPR repeat-containing p 100.0 4.8E-30 1.6E-34 262.4 27.1 350 92-522 64-501 (537)
17 3hym_B Cell division cycle pro 100.0 8.5E-30 2.9E-34 243.2 26.7 259 224-549 32-302 (330)
18 2h6f_A Protein farnesyltransfe 100.0 2.7E-29 9.2E-34 241.4 26.0 255 152-530 92-366 (382)
19 4eqf_A PEX5-related protein; a 100.0 3.8E-30 1.3E-34 249.6 19.2 271 156-548 64-358 (365)
20 2h6f_A Protein farnesyltransfe 100.0 3.6E-30 1.2E-34 247.4 14.5 256 114-415 89-363 (382)
21 3cv0_A Peroxisome targeting si 100.0 5.1E-29 1.7E-33 237.5 22.1 272 156-549 20-318 (327)
22 1fch_A Peroxisomal targeting s 100.0 1.4E-28 4.7E-33 238.8 24.2 259 226-550 37-318 (368)
23 2pl2_A Hypothetical conserved 100.0 5.4E-28 1.9E-32 215.3 24.2 211 245-544 2-212 (217)
24 4eqf_A PEX5-related protein; a 100.0 6.8E-28 2.3E-32 233.7 23.4 250 235-549 48-313 (365)
25 2xm6_A Protein corresponding t 100.0 2.7E-25 9.3E-30 224.0 38.3 349 137-547 57-433 (490)
26 2pl2_A Hypothetical conserved 100.0 4.1E-27 1.4E-31 209.6 18.8 200 154-398 2-212 (217)
27 2xm6_A Protein corresponding t 100.0 2.9E-25 1E-29 223.7 34.4 377 102-545 58-466 (490)
28 3u4t_A TPR repeat-containing p 99.9 2.2E-26 7.5E-31 213.2 23.7 221 243-531 32-269 (272)
29 3uq3_A Heat shock protein STI1 99.9 1.1E-25 3.8E-30 206.5 26.3 227 156-547 4-237 (258)
30 3cv0_A Peroxisome targeting si 99.9 5.7E-26 1.9E-30 216.3 23.5 281 90-403 24-318 (327)
31 3sf4_A G-protein-signaling mod 99.9 5E-26 1.7E-30 223.8 19.8 309 154-542 6-372 (406)
32 2ooe_A Cleavage stimulation fa 99.9 2.2E-24 7.6E-29 219.5 32.6 404 111-549 2-495 (530)
33 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.3E-24 4.4E-29 201.5 27.8 245 224-540 15-269 (275)
34 3mkr_A Coatomer subunit epsilo 99.9 1.8E-24 6.2E-29 201.2 28.0 254 224-550 9-268 (291)
35 3u4t_A TPR repeat-containing p 99.9 7.8E-26 2.7E-30 209.4 18.3 240 133-413 13-263 (272)
36 4a1s_A PINS, partner of inscut 99.9 1.6E-25 5.5E-30 220.7 21.1 282 154-549 45-375 (411)
37 3mkr_A Coatomer subunit epsilo 99.9 7.3E-25 2.5E-29 203.9 23.9 229 134-412 10-241 (291)
38 3uq3_A Heat shock protein STI1 99.9 3.7E-25 1.3E-29 203.0 19.8 233 133-411 15-253 (258)
39 4abn_A Tetratricopeptide repea 99.9 1.1E-24 3.9E-29 217.4 23.5 224 228-542 82-317 (474)
40 1ouv_A Conserved hypothetical 99.9 2.2E-23 7.4E-28 193.1 30.6 229 244-549 2-254 (273)
41 3sf4_A G-protein-signaling mod 99.9 1E-24 3.5E-29 214.3 20.3 265 224-549 19-339 (406)
42 3ro2_A PINS homolog, G-protein 99.9 3.2E-24 1.1E-28 204.8 23.1 279 158-550 6-336 (338)
43 2q7f_A YRRB protein; TPR, prot 99.9 4.3E-24 1.5E-28 194.0 22.6 210 224-532 33-242 (243)
44 3vtx_A MAMA; tetratricopeptide 99.9 8.2E-24 2.8E-28 183.3 22.8 173 155-405 3-175 (184)
45 3vtx_A MAMA; tetratricopeptide 99.9 1.4E-23 4.6E-28 181.9 23.1 142 246-408 3-144 (184)
46 2ooe_A Cleavage stimulation fa 99.9 6.7E-23 2.3E-27 208.6 31.6 365 146-548 2-456 (530)
47 2ho1_A Type 4 fimbrial biogene 99.9 4.4E-23 1.5E-27 188.6 27.0 209 242-549 30-241 (252)
48 2q7f_A YRRB protein; TPR, prot 99.9 2E-23 6.7E-28 189.7 22.9 205 247-550 22-226 (243)
49 1ouv_A Conserved hypothetical 99.9 1.6E-22 5.4E-27 187.2 29.4 235 153-521 2-260 (273)
50 2vq2_A PILW, putative fimbrial 99.9 1.6E-22 5.5E-27 181.1 28.3 207 243-548 3-213 (225)
51 4abn_A Tetratricopeptide repea 99.9 4.3E-23 1.5E-27 206.0 25.1 196 134-408 79-295 (474)
52 2ho1_A Type 4 fimbrial biogene 99.9 5.4E-23 1.8E-27 188.0 23.7 214 152-409 31-247 (252)
53 3e4b_A ALGK; tetratricopeptide 99.9 4.8E-23 1.7E-27 204.3 23.8 384 93-545 9-420 (452)
54 2ond_A Cleavage stimulation fa 99.9 2.8E-22 9.7E-27 188.8 27.4 219 231-516 33-274 (308)
55 4i17_A Hypothetical protein; T 99.9 4.2E-22 1.5E-26 179.0 26.8 213 245-529 4-226 (228)
56 2vq2_A PILW, putative fimbrial 99.9 1.6E-22 5.6E-27 181.1 24.0 215 152-410 3-221 (225)
57 4a1s_A PINS, partner of inscut 99.9 2.2E-23 7.6E-28 205.3 19.8 269 136-516 61-376 (411)
58 4gyw_A UDP-N-acetylglucosamine 99.9 3.4E-23 1.2E-27 214.3 20.7 174 152-403 4-177 (723)
59 3ro2_A PINS homolog, G-protein 99.9 5.7E-23 1.9E-27 196.1 19.9 272 133-516 15-336 (338)
60 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.5E-23 2.9E-27 189.2 20.4 231 128-405 11-249 (275)
61 4gyw_A UDP-N-acetylglucosamine 99.9 1.1E-22 3.9E-27 210.4 22.8 145 243-408 4-148 (723)
62 3e4b_A ALGK; tetratricopeptide 99.9 3.8E-23 1.3E-27 205.0 18.6 346 133-547 13-388 (452)
63 4i17_A Hypothetical protein; T 99.9 4.6E-22 1.6E-26 178.8 23.5 191 153-413 3-222 (228)
64 2ond_A Cleavage stimulation fa 99.9 9E-22 3.1E-26 185.3 26.3 225 140-408 33-278 (308)
65 3ulq_A Response regulator aspa 99.9 5E-22 1.7E-26 193.6 21.7 234 224-549 113-371 (383)
66 3nf1_A KLC 1, kinesin light ch 99.9 1.1E-22 3.9E-27 191.9 16.3 264 152-549 22-310 (311)
67 3qky_A Outer membrane assembly 99.9 1.2E-20 4E-25 173.4 21.9 219 241-537 8-252 (261)
68 4ga2_A E3 SUMO-protein ligase 99.9 2.8E-21 9.7E-26 160.5 15.2 142 224-386 7-149 (150)
69 2pzi_A Probable serine/threoni 99.9 2.3E-21 7.7E-26 202.1 17.7 203 242-547 388-599 (681)
70 3dra_A Protein farnesyltransfe 99.9 8.6E-20 2.9E-24 168.1 26.0 229 231-526 50-302 (306)
71 1qqe_A Vesicular transport pro 99.9 7.5E-21 2.5E-25 177.4 19.1 161 226-407 49-235 (292)
72 3qky_A Outer membrane assembly 99.9 2.3E-20 7.8E-25 171.4 20.9 200 151-408 9-232 (261)
73 3q15_A PSP28, response regulat 99.9 6.1E-20 2.1E-24 178.4 24.8 243 250-548 103-367 (378)
74 3urz_A Uncharacterized protein 99.9 4.1E-20 1.4E-24 163.0 21.3 189 156-405 3-191 (208)
75 1hz4_A MALT regulatory protein 99.9 1.9E-19 6.6E-24 174.6 27.5 281 157-549 14-325 (373)
76 3dra_A Protein farnesyltransfe 99.8 1.3E-19 4.5E-24 166.8 22.1 231 140-411 50-299 (306)
77 3edt_B KLC 2, kinesin light ch 99.8 4.1E-21 1.4E-25 178.4 11.9 237 226-546 13-281 (283)
78 3q15_A PSP28, response regulat 99.8 3.2E-19 1.1E-23 173.2 24.7 228 224-513 111-366 (378)
79 1qqe_A Vesicular transport pro 99.8 5.2E-20 1.8E-24 171.7 17.3 206 164-407 44-276 (292)
80 3ulq_A Response regulator aspa 99.8 2.2E-20 7.7E-25 181.9 15.2 238 127-403 108-371 (383)
81 3urz_A Uncharacterized protein 99.8 2.3E-19 7.8E-24 158.2 20.2 193 248-526 4-199 (208)
82 3nf1_A KLC 1, kinesin light ch 99.8 6.8E-21 2.3E-25 179.7 10.9 221 153-403 65-310 (311)
83 2pzi_A Probable serine/threoni 99.8 9.2E-20 3.1E-24 190.0 19.7 170 225-416 402-579 (681)
84 1xi4_A Clathrin heavy chain; a 99.8 1.1E-17 3.8E-22 176.2 34.5 365 91-540 989-1378(1630)
85 2yhc_A BAMD, UPF0169 lipoprote 99.8 6.9E-19 2.4E-23 157.4 22.1 206 247-550 3-217 (225)
86 4ga2_A E3 SUMO-protein ligase 99.8 2.1E-20 7.2E-25 155.3 10.6 140 253-413 2-142 (150)
87 3as5_A MAMA; tetratricopeptide 99.8 1.2E-18 4.1E-23 150.6 21.7 137 247-404 7-143 (186)
88 3as5_A MAMA; tetratricopeptide 99.8 4.1E-19 1.4E-23 153.5 18.5 163 224-407 18-180 (186)
89 4gco_A Protein STI-1; structur 99.8 3.2E-19 1.1E-23 142.9 16.2 122 239-381 4-125 (126)
90 1hz4_A MALT regulatory protein 99.8 1.9E-17 6.6E-22 160.5 31.4 305 133-515 24-352 (373)
91 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.9E-18 6.5E-23 154.5 21.5 193 156-406 3-219 (225)
92 3edt_B KLC 2, kinesin light ch 99.8 3.5E-19 1.2E-23 165.3 17.3 235 137-401 22-282 (283)
93 1xi4_A Clathrin heavy chain; a 99.8 1.4E-17 4.8E-22 175.4 28.2 179 250-476 1197-1380(1630)
94 3dss_A Geranylgeranyl transfer 99.8 3.8E-17 1.3E-21 151.1 27.8 241 231-527 47-319 (331)
95 4gco_A Protein STI-1; structur 99.8 2.2E-18 7.4E-23 138.1 14.8 120 273-413 4-123 (126)
96 1b89_A Protein (clathrin heavy 99.8 4.6E-19 1.6E-23 168.0 11.8 273 121-477 31-308 (449)
97 2vsy_A XCC0866; transferase, g 99.8 4.1E-18 1.4E-22 174.8 19.9 165 227-412 2-169 (568)
98 3dss_A Geranylgeranyl transfer 99.8 4.2E-17 1.4E-21 150.8 24.5 241 140-411 47-315 (331)
99 2r5s_A Uncharacterized protein 99.8 2.9E-18 9.8E-23 146.9 15.6 139 245-404 3-141 (176)
100 2r5s_A Uncharacterized protein 99.8 2.8E-18 9.6E-23 146.9 15.0 150 228-399 20-172 (176)
101 3gyz_A Chaperone protein IPGC; 99.8 3.5E-18 1.2E-22 140.8 13.9 119 232-371 20-138 (151)
102 3gyz_A Chaperone protein IPGC; 99.8 8.1E-19 2.8E-23 144.6 9.6 119 266-405 20-138 (151)
103 3qou_A Protein YBBN; thioredox 99.8 2.1E-17 7.2E-22 153.4 19.9 169 153-399 113-283 (287)
104 2ifu_A Gamma-SNAP; membrane fu 99.8 9.5E-18 3.3E-22 157.6 17.7 206 135-410 3-233 (307)
105 3qou_A Protein YBBN; thioredox 99.8 3.9E-17 1.3E-21 151.6 20.8 140 244-404 113-252 (287)
106 3q7a_A Farnesyltransferase alp 99.8 1.6E-16 5.3E-21 147.5 24.4 162 231-413 71-250 (349)
107 2ifu_A Gamma-SNAP; membrane fu 99.8 1.5E-17 5.2E-22 156.2 17.6 168 169-405 3-189 (307)
108 1b89_A Protein (clathrin heavy 99.8 3.5E-19 1.2E-23 168.8 5.8 282 135-540 15-305 (449)
109 3q7a_A Farnesyltransferase alp 99.7 4.9E-16 1.7E-20 144.1 23.4 150 244-414 50-210 (349)
110 2vgx_A Chaperone SYCD; alterna 99.7 1.8E-17 6.1E-22 137.0 12.1 118 235-373 8-125 (148)
111 2vsy_A XCC0866; transferase, g 99.7 1.7E-16 5.9E-21 162.7 20.9 127 261-408 2-128 (568)
112 1p5q_A FKBP52, FK506-binding p 99.7 1.1E-18 3.7E-23 165.8 3.4 203 226-548 77-296 (336)
113 1p5q_A FKBP52, FK506-binding p 99.7 1.6E-17 5.4E-22 157.8 11.4 154 226-400 125-294 (336)
114 3rjv_A Putative SEL1 repeat pr 99.7 1E-15 3.5E-20 135.1 20.8 153 231-408 3-165 (212)
115 2vgx_A Chaperone SYCD; alterna 99.7 7.8E-17 2.7E-21 133.1 12.4 122 266-408 5-126 (148)
116 2fo7_A Synthetic consensus TPR 99.7 8.8E-16 3E-20 124.7 18.7 134 249-403 2-135 (136)
117 2xcb_A PCRH, regulatory protei 99.7 1E-16 3.5E-21 131.7 12.5 123 235-378 5-127 (142)
118 4e6h_A MRNA 3'-END-processing 99.7 8.5E-15 2.9E-19 149.8 29.0 395 109-550 53-574 (679)
119 4f3v_A ESX-1 secretion system 99.7 5.2E-17 1.8E-21 145.7 10.3 201 227-525 19-249 (282)
120 3rjv_A Putative SEL1 repeat pr 99.7 7.2E-16 2.5E-20 136.1 17.5 176 144-401 7-198 (212)
121 2c2l_A CHIP, carboxy terminus 99.7 3.6E-16 1.2E-20 144.5 16.1 197 279-545 1-198 (281)
122 4f3v_A ESX-1 secretion system 99.7 2.2E-16 7.4E-21 141.7 14.1 215 136-411 19-247 (282)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2.7E-15 9.3E-20 132.7 20.3 146 247-416 5-166 (213)
124 3upv_A Heat shock protein STI1 99.7 1.9E-15 6.6E-20 121.3 16.5 118 245-383 1-124 (126)
125 2xcb_A PCRH, regulatory protei 99.7 5.4E-16 1.9E-20 127.3 12.8 120 269-409 5-124 (142)
126 4e6h_A MRNA 3'-END-processing 99.7 8.2E-14 2.8E-18 142.6 31.7 379 144-548 53-535 (679)
127 2c2l_A CHIP, carboxy terminus 99.7 8E-16 2.7E-20 142.2 14.5 169 154-405 1-169 (281)
128 4gcn_A Protein STI-1; structur 99.7 1.2E-15 4.2E-20 122.3 13.1 111 245-369 5-115 (127)
129 2e2e_A Formate-dependent nitri 99.6 1.2E-15 4E-20 130.7 13.2 130 224-374 20-152 (177)
130 1a17_A Serine/threonine protei 99.6 7.6E-15 2.6E-19 124.0 18.1 134 247-401 12-147 (166)
131 2fbn_A 70 kDa peptidylprolyl i 99.6 6.9E-16 2.4E-20 134.8 11.1 153 226-399 16-185 (198)
132 2e2e_A Formate-dependent nitri 99.6 3.1E-15 1.1E-19 128.1 14.6 131 258-409 20-153 (177)
133 1dce_A Protein (RAB geranylger 99.6 1.4E-14 4.8E-19 146.4 21.5 191 260-535 40-244 (567)
134 2vyi_A SGTA protein; chaperone 99.6 9.3E-15 3.2E-19 117.8 16.4 126 242-388 6-131 (131)
135 1dce_A Protein (RAB geranylger 99.6 7.4E-15 2.5E-19 148.4 19.2 163 231-414 46-235 (567)
136 2lni_A Stress-induced-phosphop 99.6 9.1E-15 3.1E-19 118.4 15.9 123 243-386 11-133 (133)
137 3sz7_A HSC70 cochaperone (SGT) 99.6 6.3E-15 2.1E-19 124.4 15.2 82 246-327 9-90 (164)
138 2fo7_A Synthetic consensus TPR 99.6 3E-14 1E-18 115.4 18.3 106 243-369 30-135 (136)
139 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 5E-16 1.7E-20 153.9 8.9 153 225-398 245-413 (457)
140 3sz7_A HSC70 cochaperone (SGT) 99.6 1.3E-14 4.4E-19 122.4 15.9 119 278-417 7-125 (164)
141 3upv_A Heat shock protein STI1 99.6 1.3E-14 4.5E-19 116.3 14.7 114 279-413 1-120 (126)
142 3mv2_B Coatomer subunit epsilo 99.6 2E-13 6.8E-18 124.1 23.6 147 233-401 85-241 (310)
143 2qfc_A PLCR protein; TPR, HTH, 99.6 8E-14 2.7E-18 129.9 21.0 180 281-549 74-269 (293)
144 2qfc_A PLCR protein; TPR, HTH, 99.6 5.9E-14 2E-18 130.8 19.8 177 154-402 72-268 (293)
145 1hh8_A P67PHOX, NCF-2, neutrop 99.6 6.1E-14 2.1E-18 124.0 17.7 139 225-399 17-171 (213)
146 1na0_A Designed protein CTPR3; 99.6 1.2E-13 4.3E-18 110.1 17.2 121 244-385 4-125 (125)
147 2hr2_A Hypothetical protein; a 99.6 2E-14 6.9E-19 116.4 12.1 106 285-411 14-142 (159)
148 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 4.1E-16 1.4E-20 154.5 2.6 163 228-413 200-393 (457)
149 3q49_B STIP1 homology and U bo 99.6 3.4E-14 1.2E-18 115.7 13.6 117 244-381 5-126 (137)
150 3u3w_A Transcriptional activat 99.6 2.2E-14 7.5E-19 133.7 14.0 157 224-401 85-267 (293)
151 1hxi_A PEX5, peroxisome target 99.6 3.4E-14 1.2E-18 112.7 13.0 103 249-372 18-120 (121)
152 2hr2_A Hypothetical protein; a 99.6 1.8E-14 6.3E-19 116.6 11.6 111 247-378 10-143 (159)
153 4gcn_A Protein STI-1; structur 99.6 4.2E-14 1.4E-18 113.3 13.3 103 281-404 7-116 (127)
154 3rkv_A Putative peptidylprolyl 99.6 3.6E-14 1.2E-18 119.4 13.1 117 247-384 10-145 (162)
155 3u3w_A Transcriptional activat 99.6 1.3E-13 4.6E-18 128.3 18.0 161 349-549 87-269 (293)
156 2fbn_A 70 kDa peptidylprolyl i 99.6 1.4E-14 4.7E-19 126.5 10.5 148 248-416 4-167 (198)
157 1hxi_A PEX5, peroxisome target 99.6 4.4E-14 1.5E-18 112.0 12.4 102 283-405 18-119 (121)
158 3gw4_A Uncharacterized protein 99.5 8E-14 2.8E-18 122.1 15.2 159 225-404 3-180 (203)
159 1elw_A TPR1-domain of HOP; HOP 99.5 3.2E-13 1.1E-17 106.4 17.2 114 247-381 3-116 (118)
160 1a17_A Serine/threonine protei 99.5 1.6E-13 5.3E-18 115.9 16.0 124 224-366 23-146 (166)
161 1wao_1 Serine/threonine protei 99.5 8.6E-14 3E-18 138.3 14.6 135 212-369 8-153 (477)
162 3q49_B STIP1 homology and U bo 99.5 3.5E-13 1.2E-17 109.7 15.7 107 276-403 3-109 (137)
163 1wao_1 Serine/threonine protei 99.5 3.7E-15 1.3E-19 148.2 4.4 142 246-408 4-158 (477)
164 2if4_A ATFKBP42; FKBP-like, al 99.5 1.4E-14 4.9E-19 137.4 8.2 144 241-405 172-333 (338)
165 2lni_A Stress-induced-phosphop 99.5 2.8E-13 9.6E-18 109.5 14.5 118 278-416 12-129 (133)
166 2dba_A Smooth muscle cell asso 99.5 3.4E-13 1.2E-17 111.3 15.3 120 242-382 22-144 (148)
167 3mv2_B Coatomer subunit epsilo 99.5 9.1E-13 3.1E-17 119.8 18.5 242 225-550 24-286 (310)
168 1zu2_A Mitochondrial import re 99.5 8.1E-14 2.8E-18 112.5 10.1 98 226-323 14-132 (158)
169 3rkv_A Putative peptidylprolyl 99.5 4E-13 1.4E-17 112.9 14.4 111 282-413 11-140 (162)
170 1elw_A TPR1-domain of HOP; HOP 99.5 1.1E-12 3.6E-17 103.4 16.0 112 281-413 3-114 (118)
171 2xev_A YBGF; tetratricopeptide 99.5 7.8E-13 2.7E-17 106.3 15.2 112 250-382 4-121 (129)
172 1elr_A TPR2A-domain of HOP; HO 99.5 5.5E-13 1.9E-17 107.3 14.0 119 245-385 1-126 (131)
173 2kck_A TPR repeat; tetratricop 99.5 2.7E-13 9.2E-18 105.8 11.7 106 278-404 2-110 (112)
174 2vyi_A SGTA protein; chaperone 99.5 7.2E-13 2.5E-17 106.5 14.5 119 277-416 7-125 (131)
175 1na0_A Designed protein CTPR3; 99.5 2.2E-12 7.5E-17 102.7 17.1 117 278-415 4-121 (125)
176 2kck_A TPR repeat; tetratricop 99.5 2.8E-13 9.7E-18 105.7 11.1 106 244-370 2-110 (112)
177 1ihg_A Cyclophilin 40; ppiase 99.5 1.4E-12 4.7E-17 125.0 17.4 130 157-327 223-352 (370)
178 2dba_A Smooth muscle cell asso 99.5 1.1E-12 3.8E-17 108.2 14.7 117 276-413 22-141 (148)
179 3k9i_A BH0479 protein; putativ 99.5 2.5E-13 8.6E-18 107.1 9.9 95 227-321 3-100 (117)
180 1ihg_A Cyclophilin 40; ppiase 99.4 7.8E-13 2.7E-17 126.7 14.2 126 247-393 222-363 (370)
181 3gw4_A Uncharacterized protein 99.4 4.7E-12 1.6E-16 110.7 18.0 124 258-402 2-138 (203)
182 2xev_A YBGF; tetratricopeptide 99.4 2.4E-12 8.1E-17 103.4 14.5 108 283-411 3-116 (129)
183 1zu2_A Mitochondrial import re 99.4 4.8E-13 1.7E-17 108.0 9.9 69 259-327 13-91 (158)
184 2if4_A ATFKBP42; FKBP-like, al 99.4 5.1E-13 1.7E-17 126.7 11.0 128 224-371 189-333 (338)
185 3k9i_A BH0479 protein; putativ 99.4 3.7E-13 1.3E-17 106.1 8.2 100 260-380 2-104 (117)
186 4b4t_Q 26S proteasome regulato 99.4 7.1E-12 2.4E-16 123.8 19.0 140 248-402 4-166 (434)
187 2uy1_A Cleavage stimulation fa 99.4 5.8E-10 2E-14 110.9 31.3 341 138-543 10-380 (493)
188 4b4t_Q 26S proteasome regulato 99.4 4.7E-11 1.6E-15 117.9 23.3 187 157-404 4-208 (434)
189 3ro3_A PINS homolog, G-protein 99.4 2.6E-12 9E-17 107.6 12.2 136 247-403 8-161 (164)
190 1elr_A TPR2A-domain of HOP; HO 99.4 7.3E-12 2.5E-16 100.6 13.5 111 280-412 2-119 (131)
191 3ro3_A PINS homolog, G-protein 99.3 9E-12 3.1E-16 104.3 12.8 141 157-314 9-161 (164)
192 2uy1_A Cleavage stimulation fa 99.3 1.1E-08 3.7E-13 101.7 32.0 332 109-548 16-415 (493)
193 2kat_A Uncharacterized protein 99.3 8.2E-11 2.8E-15 92.2 12.5 84 231-314 2-85 (115)
194 2l6j_A TPR repeat-containing p 99.2 9.8E-12 3.4E-16 96.7 5.8 81 247-327 3-89 (111)
195 2kat_A Uncharacterized protein 99.2 1E-10 3.4E-15 91.7 10.7 83 266-369 3-85 (115)
196 1na3_A Designed protein CTPR2; 99.2 2.8E-10 9.5E-15 84.7 12.6 83 245-327 6-88 (91)
197 2l6j_A TPR repeat-containing p 99.2 1.9E-11 6.5E-16 95.1 5.7 95 281-396 3-103 (111)
198 1na3_A Designed protein CTPR2; 99.1 5.4E-10 1.9E-14 83.1 11.4 85 280-385 7-91 (91)
199 3ma5_A Tetratricopeptide repea 99.1 4.9E-10 1.7E-14 85.0 10.4 72 243-314 2-73 (100)
200 1klx_A Cysteine rich protein B 99.1 3.4E-09 1.2E-13 85.7 15.2 125 227-378 8-136 (138)
201 2kc7_A BFR218_protein; tetratr 99.1 3.8E-10 1.3E-14 85.6 7.6 90 252-370 4-94 (99)
202 3ma5_A Tetratricopeptide repea 99.0 1.2E-09 4.2E-14 82.8 10.1 71 278-369 3-73 (100)
203 2kc7_A BFR218_protein; tetratr 99.0 7.1E-10 2.4E-14 84.0 7.2 91 286-405 4-95 (99)
204 3u64_A Protein TP_0956; tetrat 99.0 3.6E-08 1.2E-12 87.2 18.1 186 135-369 44-272 (301)
205 1klx_A Cysteine rich protein B 99.0 1E-08 3.5E-13 82.8 13.8 115 262-401 9-127 (138)
206 3n71_A Histone lysine methyltr 99.0 2.7E-09 9.4E-14 105.1 12.2 127 254-401 315-465 (490)
207 3ly7_A Transcriptional activat 99.0 1.8E-08 6.1E-13 93.3 16.4 144 240-405 186-344 (372)
208 1pc2_A Mitochondria fission pr 98.9 1.3E-08 4.6E-13 81.0 11.3 103 224-326 8-115 (152)
209 3n71_A Histone lysine methyltr 98.9 8.8E-09 3E-13 101.5 11.0 135 163-312 315-465 (490)
210 3u64_A Protein TP_0956; tetrat 98.9 6.9E-08 2.4E-12 85.4 15.2 111 278-404 148-273 (301)
211 3ly7_A Transcriptional activat 98.8 5.3E-08 1.8E-12 90.1 14.6 125 226-372 211-345 (372)
212 3bee_A Putative YFRE protein; 98.8 3.5E-08 1.2E-12 72.9 10.1 73 244-316 2-77 (93)
213 3bee_A Putative YFRE protein; 98.7 2E-07 6.8E-12 68.7 10.9 75 312-404 2-76 (93)
214 1pc2_A Mitochondria fission pr 98.7 2.9E-07 9.8E-12 73.4 11.6 94 297-411 13-111 (152)
215 2v5f_A Prolyl 4-hydroxylase su 98.6 4.5E-07 1.5E-11 68.8 11.0 76 248-323 5-87 (104)
216 3qww_A SET and MYND domain-con 98.6 3.1E-07 1.1E-11 88.9 11.7 94 226-319 310-424 (433)
217 3qwp_A SET and MYND domain-con 98.4 8.6E-07 3E-11 86.0 10.1 96 224-319 297-413 (429)
218 2v5f_A Prolyl 4-hydroxylase su 98.4 3.6E-06 1.2E-10 63.8 11.4 77 281-378 4-87 (104)
219 3qwp_A SET and MYND domain-con 98.4 1.5E-06 5E-11 84.4 11.1 108 255-383 294-425 (429)
220 4g26_A Pentatricopeptide repea 98.4 0.0001 3.4E-09 73.2 24.6 188 159-381 28-220 (501)
221 3qww_A SET and MYND domain-con 98.3 2.6E-06 8.8E-11 82.5 11.8 95 259-374 309-424 (433)
222 1nzn_A CGI-135 protein, fissio 98.3 7.7E-06 2.6E-10 62.6 10.9 97 228-324 15-116 (126)
223 4g26_A Pentatricopeptide repea 98.3 0.00018 6E-09 71.4 22.8 156 225-401 37-205 (501)
224 1nzn_A CGI-135 protein, fissio 98.1 5.9E-05 2E-09 57.7 11.5 99 295-411 14-114 (126)
225 4h7y_A Dual specificity protei 97.9 0.00027 9.4E-09 55.2 12.4 125 277-417 8-139 (161)
226 4h7y_A Dual specificity protei 97.9 0.00017 5.9E-09 56.3 11.0 117 152-318 8-130 (161)
227 3o48_A Mitochondria fission 1 97.7 0.00061 2.1E-08 52.2 12.0 100 224-324 17-120 (134)
228 1y8m_A FIS1; mitochondria, unk 97.7 0.0008 2.7E-08 52.3 12.7 100 224-324 16-119 (144)
229 3ffl_A Anaphase-promoting comp 97.5 0.00028 9.5E-09 56.5 7.8 102 224-326 30-165 (167)
230 3ffl_A Anaphase-promoting comp 97.4 0.00092 3.1E-08 53.6 9.7 116 249-397 21-148 (167)
231 3o48_A Mitochondria fission 1 97.3 0.0015 5.1E-08 50.0 8.5 66 227-292 56-122 (134)
232 1y8m_A FIS1; mitochondria, unk 97.2 0.014 4.7E-07 45.4 13.1 80 313-410 36-116 (144)
233 3txn_A 26S proteasome regulato 97.1 0.036 1.2E-06 52.2 17.8 196 158-387 20-236 (394)
234 3mkq_A Coatomer beta'-subunit; 96.6 0.25 8.5E-06 52.3 22.2 97 259-397 610-707 (814)
235 3txn_A 26S proteasome regulato 96.6 0.21 7.2E-06 47.1 18.7 177 372-549 20-213 (394)
236 1zbp_A Hypothetical protein VP 96.2 0.23 7.9E-06 43.4 15.4 121 257-405 6-134 (273)
237 3kae_A CDC27, possible protein 96.2 0.37 1.3E-05 38.4 16.8 111 248-405 33-148 (242)
238 4gns_B Protein CSD3, chitin bi 96.2 0.042 1.4E-06 56.4 12.4 123 260-397 260-397 (754)
239 1qsa_A Protein (soluble lytic 96.1 1.3 4.3E-05 44.8 22.8 51 494-544 296-346 (618)
240 4gns_B Protein CSD3, chitin bi 96.1 0.059 2E-06 55.4 13.0 54 489-542 343-396 (754)
241 1zbp_A Hypothetical protein VP 95.9 0.18 6.1E-06 44.1 13.4 59 348-406 8-66 (273)
242 4b4t_P 26S proteasome regulato 95.8 0.61 2.1E-05 45.2 18.5 196 350-548 29-249 (445)
243 3mkq_A Coatomer beta'-subunit; 95.8 0.12 4E-06 54.9 14.5 44 259-307 663-706 (814)
244 2ff4_A Probable regulatory pro 95.7 0.32 1.1E-05 46.2 15.7 63 248-310 171-233 (388)
245 3mkq_B Coatomer subunit alpha; 95.7 0.11 3.9E-06 42.4 10.6 101 224-363 15-115 (177)
246 3mkq_B Coatomer subunit alpha; 95.5 0.41 1.4E-05 39.1 13.2 109 247-397 7-115 (177)
247 1ya0_A SMG-7 transcript varian 95.4 0.087 3E-06 51.5 10.8 80 249-328 153-232 (497)
248 2ff4_A Probable regulatory pro 94.6 0.69 2.4E-05 43.9 14.4 89 256-365 123-233 (388)
249 3kae_A CDC27, possible protein 94.6 1.4 4.7E-05 35.3 18.7 153 248-404 62-241 (242)
250 4b4t_R RPN7, 26S proteasome re 94.4 0.29 9.8E-06 47.3 11.2 125 227-368 110-239 (429)
251 4fhn_B Nucleoporin NUP120; pro 94.1 3.3 0.00011 45.6 20.1 53 253-309 817-869 (1139)
252 1ya0_A SMG-7 transcript varian 94.0 0.4 1.4E-05 46.9 11.3 79 284-383 154-232 (497)
253 4b4t_P 26S proteasome regulato 93.6 5.6 0.00019 38.4 23.4 199 226-479 28-246 (445)
254 3spa_A Mtrpol, DNA-directed RN 93.5 1.2 4.1E-05 47.2 14.1 101 246-367 125-231 (1134)
255 3spa_A Mtrpol, DNA-directed RN 92.7 1.9 6.4E-05 45.7 14.3 88 224-312 137-231 (1134)
256 4b4t_S RPN3, 26S proteasome re 92.7 1.4 4.7E-05 42.8 12.5 127 256-405 144-304 (523)
257 4b4t_R RPN7, 26S proteasome re 92.3 0.78 2.7E-05 44.2 10.6 104 279-403 128-240 (429)
258 1qsa_A Protein (soluble lytic 92.3 10 0.00036 38.2 24.5 124 254-399 220-347 (618)
259 4b4t_S RPN3, 26S proteasome re 91.8 0.44 1.5E-05 46.3 7.8 68 247-316 230-304 (523)
260 4fhn_B Nucleoporin NUP120; pro 90.1 3.6 0.00012 45.3 14.2 32 244-275 838-869 (1139)
261 2wpv_A GET4, UPF0363 protein Y 89.9 11 0.00037 34.1 19.7 80 231-310 117-216 (312)
262 3lpz_A GET4 (YOR164C homolog); 86.7 19 0.00063 32.9 22.4 135 231-385 119-296 (336)
263 4ady_A RPN2, 26S proteasome re 86.6 36 0.0012 36.0 23.4 135 159-309 415-551 (963)
264 1wy6_A Hypothetical protein ST 85.5 2.5 8.4E-05 32.5 6.4 54 133-186 101-154 (172)
265 3lvg_A Clathrin heavy chain 1; 83.1 0.00056 1.9E-08 64.8 -17.3 128 253-394 149-285 (624)
266 2wpv_A GET4, UPF0363 protein Y 81.0 31 0.0011 31.1 15.0 88 447-547 130-218 (312)
267 4ady_A RPN2, 26S proteasome re 74.6 93 0.0032 33.0 20.0 188 168-399 385-588 (963)
268 3lpz_A GET4 (YOR164C homolog); 73.8 53 0.0018 29.9 25.5 245 228-532 10-297 (336)
269 2w2u_A Hypothetical P60 katani 73.1 7.2 0.00025 27.1 5.1 22 490-511 26-47 (83)
270 1wy6_A Hypothetical protein ST 72.4 21 0.00071 27.6 7.7 81 226-311 73-154 (172)
271 2v6y_A AAA family ATPase, P60 71.8 7.9 0.00027 26.9 5.1 22 490-511 18-39 (83)
272 4aez_C MAD3, mitotic spindle c 70.8 48 0.0016 28.1 11.2 65 244-314 116-182 (223)
273 4gq2_M Nucleoporin NUP120; bet 69.4 35 0.0012 36.6 12.0 100 149-283 832-933 (950)
274 4gq2_M Nucleoporin NUP120; bet 68.5 77 0.0026 34.0 14.4 110 254-402 816-928 (950)
275 2ijq_A Hypothetical protein; s 68.3 26 0.00089 27.9 8.0 60 489-548 38-106 (161)
276 1om2_A Protein (mitochondrial 68.0 11 0.00036 26.9 5.1 30 161-190 24-53 (95)
277 2w2u_A Hypothetical P60 katani 66.9 5.8 0.0002 27.6 3.6 15 173-187 16-30 (83)
278 3ax2_A Mitochondrial import re 66.5 17 0.00058 24.4 5.6 32 253-284 22-53 (73)
279 2v6y_A AAA family ATPase, P60 65.6 6.3 0.00022 27.4 3.6 15 173-187 8-22 (83)
280 2crb_A Nuclear receptor bindin 65.4 11 0.00036 26.5 4.5 23 488-510 20-42 (97)
281 2crb_A Nuclear receptor bindin 63.9 12 0.00042 26.2 4.5 28 248-275 15-42 (97)
282 3ax2_A Mitochondrial import re 62.1 25 0.00086 23.6 5.8 34 286-319 21-54 (73)
283 1om2_A Protein (mitochondrial 61.5 10 0.00035 27.0 4.0 28 522-549 25-52 (95)
284 3esl_A Checkpoint serine/threo 60.1 73 0.0025 26.4 11.3 73 243-316 75-149 (202)
285 3esl_A Checkpoint serine/threo 56.6 85 0.0029 26.0 12.8 129 137-280 6-147 (202)
286 2cwy_A Hypothetical protein TT 56.2 51 0.0018 23.4 7.1 58 489-548 7-70 (94)
287 3t5v_B Nuclear mRNA export pro 56.2 31 0.0011 33.1 7.7 90 226-315 138-254 (455)
288 3t5x_A PCI domain-containing p 56.1 26 0.00088 29.3 6.4 35 248-282 14-48 (203)
289 2ijq_A Hypothetical protein; s 55.5 77 0.0026 25.2 8.8 60 252-311 36-104 (161)
290 3t5x_A PCI domain-containing p 55.2 33 0.0011 28.7 6.9 37 282-318 14-50 (203)
291 2rpa_A Katanin P60 ATPase-cont 54.8 16 0.00054 25.0 3.9 23 488-510 17-39 (78)
292 4a5x_A MITD1, MIT domain-conta 53.6 24 0.00081 24.7 4.8 23 488-510 21-43 (86)
293 3re2_A Predicted protein; meni 53.1 44 0.0015 30.4 7.4 64 247-310 254-324 (472)
294 2wvi_A Mitotic checkpoint seri 53.0 86 0.0029 25.0 9.0 69 243-317 61-131 (164)
295 3t5v_B Nuclear mRNA export pro 52.9 18 0.0006 34.8 5.4 58 492-549 185-253 (455)
296 2dl1_A Spartin; SPG20, MIT, st 48.7 14 0.00047 27.4 3.0 14 499-512 19-32 (116)
297 4a1g_A Mitotic checkpoint seri 48.7 97 0.0033 24.4 13.4 66 244-315 67-134 (152)
298 2v6x_A Vacuolar protein sortin 47.5 33 0.0011 23.8 4.8 17 530-546 26-42 (85)
299 2v6x_A Vacuolar protein sortin 47.4 18 0.00062 25.2 3.4 14 173-186 10-23 (85)
300 2cpt_A SKD1 protein, vacuolar 47.2 16 0.00055 27.3 3.3 13 174-186 16-28 (117)
301 3re2_A Predicted protein; meni 46.7 84 0.0029 28.7 8.2 33 516-548 295-327 (472)
302 1wfd_A Hypothetical protein 15 46.3 27 0.00094 24.8 4.3 17 530-546 28-44 (93)
303 2wvi_A Mitotic checkpoint seri 45.1 1.2E+02 0.004 24.3 11.5 84 177-280 43-128 (164)
304 2cpt_A SKD1 protein, vacuolar 44.6 32 0.0011 25.7 4.6 24 488-511 23-46 (117)
305 3u84_A Menin; MLL, JUND, ledgf 44.5 76 0.0026 29.6 7.7 64 247-310 276-346 (550)
306 2rpa_A Katanin P60 ATPase-cont 44.2 30 0.001 23.6 3.9 27 160-186 15-41 (78)
307 2ynq_A ESSB; membrane protein, 41.7 97 0.0033 24.5 7.0 81 458-541 15-97 (161)
308 3ubw_A 14-3-3E, 14-3-3 protein 38.7 1.9E+02 0.0067 25.0 11.4 149 251-399 34-227 (261)
309 4a1g_A Mitotic checkpoint seri 37.9 1.5E+02 0.005 23.3 7.7 46 501-546 83-130 (152)
310 4aez_C MAD3, mitotic spindle c 36.2 1.4E+02 0.0046 25.3 7.6 31 515-545 148-178 (223)
311 2dl1_A Spartin; SPG20, MIT, st 34.8 37 0.0012 25.2 3.4 16 172-187 18-33 (116)
312 2cwy_A Hypothetical protein TT 33.8 1.3E+02 0.0043 21.4 6.6 28 287-314 6-33 (94)
313 2br9_A 14-3-3E, 14-3-3 protein 32.3 2.4E+02 0.0081 24.1 11.0 31 250-280 7-37 (234)
314 4gq4_A Menin; tumor suppressor 32.0 1.4E+02 0.0047 28.0 7.4 75 248-322 262-349 (489)
315 3uzd_A 14-3-3 protein gamma; s 31.2 2.5E+02 0.0087 24.1 12.7 149 251-399 7-202 (248)
316 2vkj_A TM1634; membrane protei 30.5 1.4E+02 0.0047 20.8 6.1 31 156-186 52-82 (106)
317 3bu8_A Telomeric repeat-bindin 30.2 1.8E+02 0.0063 24.3 7.1 76 230-305 88-171 (235)
318 3u84_A Menin; MLL, JUND, ledgf 29.8 1.3E+02 0.0044 28.1 6.7 24 486-509 321-344 (550)
319 2cfu_A SDSA1; SDS-hydrolase, l 28.3 93 0.0032 31.6 6.5 47 250-296 451-497 (658)
320 3iqu_A 14-3-3 protein sigma; s 27.1 2.9E+02 0.01 23.5 18.1 48 499-546 149-205 (236)
321 3mkr_B Coatomer subunit alpha; 26.6 3.5E+02 0.012 24.3 9.5 28 161-188 106-133 (320)
322 2br9_A 14-3-3E, 14-3-3 protein 24.0 3.3E+02 0.011 23.1 17.0 48 499-546 146-202 (234)
323 3myv_A SUSD superfamily protei 24.0 1.6E+02 0.0054 28.2 7.0 31 516-546 189-219 (454)
324 3lew_A SUSD-like carbohydrate 23.5 1.7E+02 0.0058 28.4 7.2 31 516-546 202-232 (495)
325 3mv2_A Coatomer subunit alpha; 23.5 4.1E+02 0.014 23.9 9.2 28 161-188 118-145 (325)
326 2cfu_A SDSA1; SDS-hydrolase, l 23.1 1E+02 0.0035 31.3 5.7 50 486-535 452-501 (658)
327 3iqu_A 14-3-3 protein sigma; s 22.8 3.6E+02 0.012 23.0 9.9 32 249-280 9-40 (236)
328 3snx_A SUSD homolog, putative 22.0 76 0.0026 30.6 4.3 31 247-277 190-220 (460)
329 3kez_A Putative sugar binding 21.8 1.7E+02 0.0058 28.1 6.7 31 516-546 195-225 (461)
330 1wfd_A Hypothetical protein 15 21.4 2.2E+02 0.0074 20.0 7.9 17 500-516 39-55 (93)
331 2qx5_A Nucleoporin NIC96; mRNA 20.9 6.6E+02 0.023 25.4 15.5 29 519-548 538-568 (661)
332 3myv_A SUSD superfamily protei 20.7 2E+02 0.0067 27.5 6.9 53 134-186 159-219 (454)
333 3lew_A SUSD-like carbohydrate 20.5 2.5E+02 0.0085 27.2 7.7 53 134-186 169-232 (495)
334 2uwj_G Type III export protein 20.3 2.5E+02 0.0085 20.3 6.5 73 231-309 23-95 (115)
335 2p58_C Putative type III secre 20.0 2.5E+02 0.0087 20.2 7.7 72 231-308 24-95 (116)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.6e-40 Score=324.01 Aligned_cols=380 Identities=19% Similarity=0.183 Sum_probs=256.4
Q ss_pred HHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCc
Q 008818 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 173 (552)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~ 173 (552)
+..+++.|+...++ ..+.++++..|++...+..+|.. ....+.++.+...+..+++.+|.++.+|+.+|.+|...|++
T Consensus 6 a~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 55667777777775 77778888888877777777777 67777788888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHH
Q 008818 174 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 253 (552)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 253 (552)
++|+..|++++++.|+. ...+..++.++...|+. ++|+..|+++++.+|++..++..
T Consensus 84 ~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~-----------~~A~~~~~~al~~~p~~~~~~~~ 140 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDF------------IDGYINLAAALVAAGDM-----------EGAVQAYVSALQYNPDLYCVRSD 140 (388)
T ss_dssp HHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHSCS-----------SHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHHcCcch------------HHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCcHHHHHH
Confidence 88888888888775543 12334445554444443 88888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccc
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 333 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 333 (552)
+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------ 214 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK------ 214 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH------
Confidence 88888888888888888888888888888888888888888888888888888888888888888877777776
Q ss_pred ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 334 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.
T Consensus 215 ---------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 215 ---------------EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp ---------------TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred ---------------HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 77788888888888888888888888888888888888888888888888887776655544444
Q ss_pred HHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHH
Q 008818 414 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESA 491 (552)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~ 491 (552)
..... ..+..+...+...+.. .|.++.++..+|.++...|++++|+..+.+.+. +....+++.+|.
T Consensus 280 ~~~~~--------g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 280 ALKEK--------GSVAEAEDCYNTALRL----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp HHHHH--------SCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHc--------CCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 32211 0111111111122111 233444555555555555555555555555433 222344445555
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 008818 492 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 531 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 531 (552)
++...|++++|+..|+++++++|+++.+++.+|.++..+|
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 5555555555555555555555555555555555554444
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.5e-38 Score=305.79 Aligned_cols=348 Identities=17% Similarity=0.148 Sum_probs=304.0
Q ss_pred hHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 008818 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 172 (552)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~ 172 (552)
-+..+...|+...+. ..+.++++.+|.....+..+|.. ....+.++.|...++++++.+|++..+|..+|.++...|+
T Consensus 39 l~~~~~~~~~~~~a~-~~~~~a~~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSA-HFSTLAIKQNPLLAEAYSNLGNV-YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHH-HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence 445566667776665 78889999999999999999999 9999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHH
Q 008818 173 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 252 (552)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 252 (552)
+++|+..|+++++..|+.. ..+..++.++ ...|++++|+..|+++++.+|+++.+|.
T Consensus 117 ~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~-----------~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDLY------------CVRSDLGNLL-----------KALGRLEEAKACYLKAIETQPNFAVAWS 173 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCT------------HHHHHHHHHH-----------HTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcH------------HHHHHHHHHH-----------HHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999976531 2233444443 3556679999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 332 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 332 (552)
.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++.++|++..++..+|.++.
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----- 248 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY----- 248 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 008818 333 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 412 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 412 (552)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|++...+..++
T Consensus 249 ----------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 249 ----------------EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ----------------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHH
Q 008818 413 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 490 (552)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la 490 (552)
...... ..+..+...+ .......|....++..+|.++...|++++|+..+++.+. +....+++.+|
T Consensus 313 ~~~~~~--------g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 313 NIKREQ--------GNIEEAVRLY----RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp HHHHTT--------TCHHHHHHHH----HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHc--------CCHHHHHHHH----HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence 654421 1222233333 333345678899999999999999999999999999665 66668888999
Q ss_pred HHHHhhhh
Q 008818 491 AFLDQASA 498 (552)
Q Consensus 491 ~~~~~~~~ 498 (552)
.++...|+
T Consensus 381 ~~~~~~~~ 388 (388)
T 1w3b_A 381 NTLKEMQD 388 (388)
T ss_dssp HHHHHTCC
T ss_pred HHHHHccC
Confidence 98877663
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=300.68 Aligned_cols=378 Identities=13% Similarity=0.086 Sum_probs=325.9
Q ss_pred hhhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008818 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 170 (552)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~ 170 (552)
...|..+.+.|++..++ ..|+++++.+| +...+..+|.+ +...+.++.|...+.++++.+|++..+++.+|.+|..+
T Consensus 10 ~~~g~~~~~~g~~~~A~-~~~~~al~~~p-~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAI-KYYNWALELKE-DPVFYSNLSAC-YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHH-HHHHHHHHHCC-CHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhcCc-cHHHHHhHHHH-HHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 35677888889988887 99999999998 47778888888 88999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhccccccchhHHHH------------------------------------------------
Q 008818 171 GQPLKAVSSYEKAEEILLRCEADIARPELLSL------------------------------------------------ 202 (552)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------------------------------------ 202 (552)
|++++|+..|++++...|.+..... .....
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIE--PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTH--HHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999998763321110 00000
Q ss_pred ---------------------HHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHh-----c---------Ccch
Q 008818 203 ---------------------VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ-----S---------DTRQ 247 (552)
Q Consensus 203 ---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~-----~---------~p~~ 247 (552)
...+...+..+. .+...|++++|+..|+++++ . +|.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNL--------YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH--------SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH--------HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 001111111100 01247999999999999998 5 3677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
+.++..+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 889999999999999999999999999999999 9999999999999999999999999999999999999999999888
Q ss_pred HhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 008818 328 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++...|++.
T Consensus 316 ---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 372 (514)
T 2gw1_A 316 ---------------------ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP-- 372 (514)
T ss_dssp ---------------------HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS--
T ss_pred ---------------------HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH--
Confidence 899999999999999999999999999999999999999999999999999988754
Q ss_pred HHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhh---
Q 008818 408 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC--- 484 (552)
Q Consensus 408 ~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--- 484 (552)
.++..+|.++...|++++|+..+.+.+...+..
T Consensus 373 --------------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 373 --------------------------------------------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp --------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred --------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 456777888888999999999998876644332
Q ss_pred -----hhhhHHHHHHh---hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 485 -----AGAGESAFLDQ---ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 485 -----~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.+|...|++++|+.+|++++++.+.
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 78899999999 999999999999999999999999999999999999999999999999988764
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-35 Score=302.98 Aligned_cols=382 Identities=15% Similarity=0.126 Sum_probs=315.1
Q ss_pred ccccccCCCccchhHHhHHHHHHHHHHHHHhCCCC-------------------hHHHHHHHHHHHHcCCchHHHHHHHH
Q 008818 122 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN-------------------AHAHFLLGLMYQRLGQPLKAVSSYEK 182 (552)
Q Consensus 122 ~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~-------------------~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (552)
...+..++.. +...+.++.|.+.|++ ..|.. ..+|+.+|.+|.+.|++++|+..|++
T Consensus 150 ~~~~~~l~~~-~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 150 SACRYLAAFC-LVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHH-HHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444 5556666666666654 34554 78999999999999999999999999
Q ss_pred HHHHHhhccccccchhHHHHHHHhh------------------------hhcccccccCCCccccccCchhHHHHHHHHH
Q 008818 183 AEEILLRCEADIARPELLSLVQIHH------------------------AQCLLPESSGDNSLDKELEPEELEEILSKLK 238 (552)
Q Consensus 183 al~~~p~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 238 (552)
+++.+|+.... +...+..+. ....++..++.. +.+.|++++|+..|+
T Consensus 226 ~~~~~p~~~~~-----~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 226 ALMVDAKCYEA-----FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK----TSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHCTTCHHH-----HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT----TTTHHHHHHHHHHHH
T ss_pred HHHhCchhhHH-----HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH----HcCcchHHHHHHHHH
Confidence 99987653211 000000000 000112223444 778899999999999
Q ss_pred HHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 239 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 239 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
++++. |.+..++..+|.++...|++++|+..|++++..+|++..++..++.++...|++++|+..++++++..|++...
T Consensus 297 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
T 2xpi_A 297 SINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375 (597)
T ss_dssp TSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHH
Confidence 99988 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 319 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
+..++.++. ..|++++|+..|+++++.+|.+..+|..+|.+|...|++++|+..|++++
T Consensus 376 ~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 376 WLAVGIYYL---------------------CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999888 89999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhh
Q 008818 399 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 478 (552)
Q Consensus 399 ~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 478 (552)
...|++...+..++...... ..+..+...+...+.. .|.++.+|..++.++...|++++|+..+.+.+
T Consensus 435 ~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 435 RLFQGTHLPYLFLGMQHMQL--------GNILLANEYLQSSYAL----FQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HTTTTCSHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999988888877654432 1222333333333332 45678999999999999999999999999966
Q ss_pred cc------hh---hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 479 SK------ME---ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 479 ~~------~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.. .+ ..+|..+|.++...|++++|+..|+++++++|+++.+|..+|.+|...|++++|+.+|++++++.|.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 53 11 4678899999999999999999999999999999999999999999999999999999999998875
Q ss_pred c
Q 008818 550 S 550 (552)
Q Consensus 550 ~ 550 (552)
.
T Consensus 583 ~ 583 (597)
T 2xpi_A 583 E 583 (597)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.5e-34 Score=295.80 Aligned_cols=384 Identities=14% Similarity=0.100 Sum_probs=315.4
Q ss_pred hhhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008818 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 170 (552)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~ 170 (552)
...|..+.+.|+...++ ..|+++++.+|++...+..+|.+ +...+.++.|...++++++.+|+++.+++.+|.++...
T Consensus 29 ~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAI-KYYQYAIELDPNEPVFYSNISAC-YISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHTTCCC-CH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhhCCCCcHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 34577777788887786 89999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhccccccchhHHH-----HH------------------------H-----------------
Q 008818 171 GQPLKAVSSYEKAEEILLRCEADIARPELLS-----LV------------------------Q----------------- 204 (552)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~------------------------~----------------- 204 (552)
|++++|+..|+ ++...|+............ .. .
T Consensus 107 g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 107 GNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp TCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 99999999995 7766655322110000000 00 0
Q ss_pred ----------Hhhhhcccccc-cCCCccccccCchhHHHHHHHHHHHHhcCcchHH-------HHHHHHHHHHHcCCHHH
Q 008818 205 ----------IHHAQCLLPES-SGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-------VWNTLGLILLKSGRLQS 266 (552)
Q Consensus 205 ----------~~~~~~~~~~~-~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~ 266 (552)
....++.++.. .+.. ....|++++|+..|+++++.+|+++. ++..+|.++...|++++
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~----~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGY----LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHH----HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 00000000000 0000 11235899999999999999998754 57788999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchh
Q 008818 267 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 346 (552)
Q Consensus 267 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (552)
|+..|++++..+|+ ..++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~------------------- 321 (537)
T 3fp2_A 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF------------------- 321 (537)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-------------------
Confidence 99999999999999 9999999999999999999999999999999999999999999888
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCch
Q 008818 347 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 426 (552)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~ 426 (552)
..|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++..+|++.
T Consensus 322 --~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------------- 378 (537)
T 3fp2_A 322 --ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP--------------------- 378 (537)
T ss_dssp --HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---------------------
T ss_pred --hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------------
Confidence 899999999999999999999999999999999999999999999999999998764
Q ss_pred HHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--hhh------hhhHHHHHHhh--
Q 008818 427 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--ECA------GAGESAFLDQA-- 496 (552)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~------~~~la~~~~~~-- 496 (552)
.++..+|.++...|++++|+..+.+.+...+ ... ++.+|.++...
T Consensus 379 -------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 379 -------------------------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred -------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 4567778888999999999999999766433 333 34556888888
Q ss_pred --------hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 497 --------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 497 --------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|++++++.+.
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999998765
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.3e-34 Score=286.55 Aligned_cols=353 Identities=14% Similarity=0.113 Sum_probs=298.8
Q ss_pred hhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh
Q 008818 110 KMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 189 (552)
Q Consensus 110 ~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (552)
.+.+++..+|.+...+..+|.. ....+.++.|...+.++++.+|+++.+++.+|.+|...|++++|+..|+++++..|+
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKK-LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp ---------CHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccccccccHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3444444555555555555555 666678888899999999999999999999999999999999999999999998664
Q ss_pred ccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchH---HHHHHH------------
Q 008818 190 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTL------------ 254 (552)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------ 254 (552)
. ..++..++.++. ..|++++|+..|+++++.+|++. .++..+
T Consensus 93 ~------------~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 93 F------------TAARLQRGHLLL-----------KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp C------------HHHHHHHHHHHH-----------HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c------------HHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 3 233445555543 45666999999999999999988 776655
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc
Q 008818 255 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 334 (552)
Q Consensus 255 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 334 (552)
|.++...|++++|+..|++++...|.+..++..+|.+|...|++++|+..|+++++.+|++..++..+|.++.
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~------- 222 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY------- 222 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhhCC
Q 008818 335 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL------------ANAYYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p 402 (552)
..|++++|+..|++++..+|++...+..+ |.++...|++++|+.+|++++.+.|
T Consensus 223 --------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 223 --------------QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp --------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred --------------HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 89999999999999999999998888766 9999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhh--cc
Q 008818 403 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SK 480 (552)
Q Consensus 403 ~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~ 480 (552)
+++... ...+..+|.++...|++++|+..+.+.+ .+
T Consensus 289 ~~~~~~------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 289 SIAEYT------------------------------------------VRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp SSHHHH------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred cchHHH------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 865321 1367889999999999999999999966 46
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-
Q 008818 481 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA------------YYLTG-----DHRSSGKCLEK- 542 (552)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~------------~~~~g-----~~~~A~~~~~~- 542 (552)
....+++.+|.++...|++++|+..|+++++++|+++.++..++.+ |..+| +.+++.+.|++
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 6678899999999999999999999999999999999999999954 55556 56778888887
Q ss_pred HHHHhcc
Q 008818 543 VLMVYCS 549 (552)
Q Consensus 543 al~l~~~ 549 (552)
+++..|.
T Consensus 407 ~l~~~pd 413 (450)
T 2y4t_A 407 ALQWHPD 413 (450)
T ss_dssp HHHSCGG
T ss_pred HHHhCCC
Confidence 6665553
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=8.6e-34 Score=283.49 Aligned_cols=329 Identities=15% Similarity=0.090 Sum_probs=283.7
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccc
Q 008818 143 KTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLD 222 (552)
Q Consensus 143 ~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (552)
...+.+++..+|.++.+++.+|..+...|++++|+..|+++++..|.+ ..++..++.++.
T Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~l~~~~~-------- 71 (450)
T 2y4t_A 12 DLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------YIAYYRRATVFL-------- 71 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH--------
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc------------HHHHHHHHHHHH--------
Confidence 345556667899999999999999999999999999999999986543 234455555543
Q ss_pred cccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHH-----------
Q 008818 223 KELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNL----------- 288 (552)
Q Consensus 223 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l----------- 288 (552)
..|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|++++..+|++. .++..+
T Consensus 72 ---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 72 ---AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp ---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 445669999999999999999999999999999999999999999999999999988 776655
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC
Q 008818 289 -GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 367 (552)
Q Consensus 289 -a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 367 (552)
|.++...|++++|+..|++++...|.+..++..+|.++. ..|++++|+..|+++++.+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI---------------------KEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhC
Confidence 667999999999999999999999999999999999888 8999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCC
Q 008818 368 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 447 (552)
Q Consensus 368 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (552)
|+++.++..+|.+|...|++++|+..|++++..+|++...+..+.....
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~------------------------------- 256 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK------------------------------- 256 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999998776654432110
Q ss_pred CCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhh------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH
Q 008818 448 IEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 521 (552)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 521 (552)
...+..+|.++...|++++|+..+.+.+...+. ..+..+|.++.+.|++++|+..++++++++|+++.+|.
T Consensus 257 ---~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 257 ---LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 134567799999999999999999997663332 36789999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 522 NLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 522 ~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.+|.++...|++++|+.+|++++++.|.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999998765
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.4e-33 Score=271.08 Aligned_cols=316 Identities=15% Similarity=0.094 Sum_probs=280.0
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
+++.++.+|.+++..|++++|+..|+++++..|+. ..++..+|.++ ...|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~~a~~~-----------~~~~~~~~A~~ 58 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------YIAYYRRATVF-----------LAMGKSKAALP 58 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHH-----------HHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------------HHHHHHHHHHH-----------HHccCHHHHHH
Confidence 46789999999999999999999999999986653 13345555553 44566699999
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCCHHH
Q 008818 236 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNL------------GIAYFQSGDMEQ 300 (552)
Q Consensus 236 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~ 300 (552)
.|+++++.+|++..++..+|.++...|++++|+..|+++++.+| ++..++..+ |.++...|++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 59 DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 99999999999999999999999999999999999999999999 888888877 799999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 301 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 301 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
|+..|+++++..|++..++..+|.++. ..|++++|+..++++++..|.++.++..+|.+
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFI---------------------KEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999888 89999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHH
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 460 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
+...|++++|+..|+++++..|++...+..+.... .......+|.+
T Consensus 198 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~a~~ 243 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK----------------------------------KLNKLIESAEE 243 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------------------HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH----------------------------------HHHHHHHHHHH
Confidence 99999999999999999999999887654432211 01346677889
Q ss_pred HhchhhHHHHHHHHHhhhcchhh------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChh
Q 008818 461 QKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 534 (552)
Q Consensus 461 ~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 534 (552)
+...|++++|+..+.+.+...+. ..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999997663333 346679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 008818 535 SSGKCLEKVLMVYCS 549 (552)
Q Consensus 535 ~A~~~~~~al~l~~~ 549 (552)
+|+.+|++++++.|.
T Consensus 324 ~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 324 EAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999998765
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.3e-32 Score=265.88 Aligned_cols=314 Identities=13% Similarity=0.106 Sum_probs=279.7
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
....+.++.|...+.++++.+|+++.+++.+|.++...|++++|+..|+++++..|+.. .++..+|.+
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~ 80 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT------------AARLQRGHL 80 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------------HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc------------hHHHHHHHH
Confidence 55567888888999999999999999999999999999999999999999999866431 334455555
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCc---chHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhc
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDT---RQAVVWNTL------------GLILLKSGRLQSSISVLSSLLAV 277 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~ 277 (552)
+ ...|++++|+..|+++++.+| ++..++..+ |.++...|++++|+..|++++..
T Consensus 81 ~-----------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 81 L-----------LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp H-----------HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-----------HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 445666999999999999999 888888877 79999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 278 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 278 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++. ..|++++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~ 208 (359)
T 3ieg_A 150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY---------------------QLGDHELSL 208 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH---------------------HHTCHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHHhcCCCcHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCc
Q 008818 358 ECLLAALKADPKAAHIWA------------NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 425 (552)
Q Consensus 358 ~~~~~al~~~p~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~ 425 (552)
..|+++++.+|++..++. .+|.++...|++++|+..|++++...|++...+
T Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------------- 271 (359)
T 3ieg_A 209 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT----------------- 271 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH-----------------
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH-----------------
Confidence 999999999999887654 448889999999999999999999999865321
Q ss_pred hHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHH
Q 008818 426 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAK 503 (552)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~ 503 (552)
..++..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+
T Consensus 272 -------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 272 -------------------------VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 13577889999999999999999999665 556688999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 008818 504 ECLLAALKADPKAAHIWANLANAYYLTGD 532 (552)
Q Consensus 504 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 532 (552)
.+|+++++++|++..++..++.++...++
T Consensus 327 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 327 QDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876543
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=277.11 Aligned_cols=383 Identities=14% Similarity=0.065 Sum_probs=274.7
Q ss_pred HHhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccc
Q 008818 136 EEKVSSLKTGLVHVARKM--PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (552)
...+...+..+...++.. +..+.++..||.++..+|++++|+++|++|+++.+........+.. +..+.++|.+|
T Consensus 28 ~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~---~~~~~nla~~y 104 (472)
T 4g1t_A 28 ENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS---LVTWGNYAWVY 104 (472)
T ss_dssp CCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH---HHHHHHHHHHH
Confidence 344555555555544433 3346788999999999999999999999999986654322222222 34456677775
Q ss_pred cccCCCccccccCchhHHHHHHHHHHHHhcCc--------chHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHH
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDT--------RQAVVWNTLGLILLKS--GRLQSSISVLSSLLAVDPNNCD 283 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~ 283 (552)
..+ |++++|+.+|++++++.+ ..+.++..+|.++... +++++|+.+|+++++++|+++.
T Consensus 105 ~~~-----------g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 105 YHM-----------GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHT-----------TCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHc-----------CChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 554 555999999999987643 4567888888877665 5799999999999999999999
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHH
Q 008818 284 CIGNLGIAYFQ---SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 360 (552)
Q Consensus 284 ~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 360 (552)
++..+|.++.. .++.++|+..|+++++++|++..++..++..+... +...+++++|+.++
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~-----------------~~~~~~~~~a~~~~ 236 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM-----------------REEGEEEGEGEKLV 236 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC-----------------C------CHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH-----------------HhhhhHHHHHHHHH
Confidence 99999988654 57778999999999999999999999888776532 22678899999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhcc-------CchHHHhHHH
Q 008818 361 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ-------EPTEQLSWAG 433 (552)
Q Consensus 361 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~-------~~~~~~~~~~ 433 (552)
++++..+|.+..++..+|.+|...|++++|+..|+++++.+|++..++..++........... ..........
T Consensus 237 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (472)
T 4g1t_A 237 EEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELI 316 (472)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHH
T ss_pred HHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999888875433211100 0011111111
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcch--hh---hhhhhHHHH-HHhhhhHHHHHHHHH
Q 008818 434 NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EE---CAGAGESAF-LDQASAVNVAKECLL 507 (552)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~---~~~~~la~~-~~~~~~~~~A~~~~~ 507 (552)
......+.......|....++..+|.++...|++++|+..|++++... +. ..++.+|.+ +...|++++|+.+|+
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222222333333345666789999999999999999999999977532 22 234556654 457899999999999
Q ss_pred HHHHhC------------------------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 508 AALKAD------------------------PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 508 ~al~~~------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
+++++. |+++.+|..||.+|...|++++|+++|++|+++-+.
T Consensus 397 kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 397 EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 988764 566789999999999999999999999999997654
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=278.10 Aligned_cols=348 Identities=13% Similarity=0.088 Sum_probs=291.9
Q ss_pred HHHHhhhchhhHhhhhhhhhhhhhCCCCccccccC--------------------------------------CCccchh
Q 008818 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGL--------------------------------------GTSSSSR 135 (552)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~--------------------------------------g~~~~~~ 135 (552)
+..+.+.|+...++ ..|+++++.+|.....+..+ +.. +..
T Consensus 207 ~~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 284 (597)
T 2xpi_A 207 GQVYTNLSNFDRAK-ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK-TSH 284 (597)
T ss_dssp HHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT-TTT
T ss_pred HHHHHHcCCHHHHH-HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH-HcC
Confidence 44455566666665 77888888888866554322 344 567
Q ss_pred HHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccc
Q 008818 136 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 215 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (552)
.+.++.+.+.+.++++. |.+..+|..+|.+|...|++++|+..|+++++..|++.. . +..++.+
T Consensus 285 ~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-------~~~l~~~--- 348 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD-----V-------YPLHLAS--- 348 (597)
T ss_dssp HHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT-----T-------HHHHHHH---
T ss_pred cchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH-----H-------HHHHHHH---
Confidence 78899999999888777 788999999999999999999999999999988654311 1 1222222
Q ss_pred cCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 008818 216 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 295 (552)
Q Consensus 216 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 295 (552)
+...|++++|+..++++++..|++..++..+|.+|...|++++|+..|+++++++|.+..+|..+|.+|...
T Consensus 349 --------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 349 --------LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp --------HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --------HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 234566699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 008818 296 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 375 (552)
Q Consensus 296 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 375 (552)
|++++|+..|+++++..|++..++..++.++. ..|++++|+..|+++++..|.++.+|.
T Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~ 479 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHM---------------------QLGNILLANEYLQSSYALFQYDPLLLN 479 (597)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999998888887 889999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCC-HHHH
Q 008818 376 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP-PIAW 454 (552)
Q Consensus 376 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 454 (552)
.+|.+|...|++++|+..|+++++..|+.. ..|.. ..+|
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------------------------------~~p~~~~~~~ 519 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQ----------------------------------------SNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----------------------------------------CCSGGGHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccc----------------------------------------cchhhHHHHH
Confidence 999999999999999999999988754210 01121 4679
Q ss_pred HhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 008818 455 AGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 528 (552)
Q Consensus 455 ~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 528 (552)
..+|.++...|++++|+..+++.+. +.+..++..+|.+|...|++++|+.+|+++++++|+++.++..++.+|.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999654 5567889999999999999999999999999999999999999999874
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-31 Score=253.12 Aligned_cols=306 Identities=10% Similarity=0.034 Sum_probs=264.6
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCc
Q 008818 148 HVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEP 227 (552)
Q Consensus 148 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (552)
..+...|+++.++..+|..++..|++++|+..|+++++.+|.... . +..++.+ +...
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~------~~~~~~~-----------~~~~ 69 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS------C------LPVHIGT-----------LVEL 69 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------T------HHHHHHH-----------HHHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh------h------HHHHHHH-----------HHHh
Confidence 445567889999999999999999999999999999998765421 1 1112222 2345
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
|++++|+..++++++.+|+++.++..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 67799999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 008818 307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 386 (552)
Q Consensus 307 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 386 (552)
++++..|++...+..+|.++. ..|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 150 ~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 150 TAAQLMKGCHLPMLYIGLEYG---------------------LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE 208 (330)
T ss_dssp HHHHHTTTCSHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc
Confidence 999999999999999998888 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhh
Q 008818 387 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 466 (552)
Q Consensus 387 ~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (552)
+++|+.+|++++...+.... ....+..+.++..+|.++...|+
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~-------------------------------------~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGN-------------------------------------EVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSC-------------------------------------SCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhccc-------------------------------------cccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998764321 01113445789999999999999
Q ss_pred HHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCChh
Q 008818 467 VAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAY-YLTGDHR 534 (552)
Q Consensus 467 ~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~ 534 (552)
+++|+..+.+.+. +....+++.+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999665 556688999999999999999999999999999999999999999999 5666654
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=273.10 Aligned_cols=325 Identities=13% Similarity=0.048 Sum_probs=274.6
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
....+.++.|...++++++.+| ++.++..+|.++...|++++|+..|+++++.+|++ ..++..+|.+
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~ 82 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY------------SKVLLRRASA 82 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC------------HHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH------------HHHHHHHHHH
Confidence 5556788888999999999999 69999999999999999999999999999997653 2334455555
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCc-----------------------------------------------
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDT----------------------------------------------- 245 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p----------------------------------------------- 245 (552)
+. ..|++++|+..|++++..+|
T Consensus 83 ~~-----------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (514)
T 2gw1_A 83 NE-----------GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151 (514)
T ss_dssp HH-----------HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HH-----------HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence 43 45566999999999988876
Q ss_pred --------------------------------chHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--C-----
Q 008818 246 --------------------------------RQAVVWNTLGLILLK---SGRLQSSISVLSSLLA-----V--D----- 278 (552)
Q Consensus 246 --------------------------------~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~-----~--~----- 278 (552)
.+..++..+|.+++. .|++++|+..|++++. + +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 231 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc
Confidence 236667777777776 7888888888888888 5 3
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHH
Q 008818 279 --PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 356 (552)
Q Consensus 279 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 356 (552)
|.+..++..+|.++...|++++|+..|++++..+|+ ..++..+|.++. ..|++++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~---------------------~~~~~~~A 289 (514)
T 2gw1_A 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA---------------------DRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH---------------------TSSCCTTG
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHH---------------------HCCCHHHH
Confidence 444667888888888888888888888888888888 778888887777 78888888
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHH
Q 008818 357 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEM 436 (552)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~ 436 (552)
+..|++++..+|.+..++..+|.++...|++++|+..|++++...|++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------- 338 (514)
T 2gw1_A 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI------------------------------- 338 (514)
T ss_dssp GGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS-------------------------------
T ss_pred HHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH-------------------------------
Confidence 8888888888888888888888888888888888888888888887653
Q ss_pred HHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCC
Q 008818 437 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADP 514 (552)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 514 (552)
.++..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++..|
T Consensus 339 ---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 339 ---------------FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp ---------------HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 4677788889999999999999999665 45567889999999999999999999999999999
Q ss_pred CcHH------HHHHHHHHHHH---cCChhHHHHHHHHHHHHhcc
Q 008818 515 KAAH------IWANLANAYYL---TGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 515 ~~~~------~~~~lg~~~~~---~g~~~~A~~~~~~al~l~~~ 549 (552)
+++. ++..+|.++.. .|++++|+.+|++++++.+.
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 8855 99999999999 99999999999999998654
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=6.9e-31 Score=255.04 Aligned_cols=251 Identities=19% Similarity=0.239 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|++++.
T Consensus 81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444445555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCCCHHHHHH----------------HHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC--cHH
Q 008818 311 KDQNHPAALIN----------------YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAH 372 (552)
Q Consensus 311 ~~p~~~~~~~~----------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~ 372 (552)
..|.+...+.. ++.++ ..|++++|+..|+++++.+|. ++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL----------------------SDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHH----------------------HHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh----------------------hcccHHHHHHHHHHHHHhCcCcccHH
Confidence 55554443321 22111 344555555555555555555 455
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHH
Q 008818 373 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 452 (552)
Q Consensus 373 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (552)
++..+|.++...|++++|+.+|++++.++|++..++..+
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l----------------------------------------- 257 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL----------------------------------------- 257 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH-----------------------------------------
Confidence 555555555555555555555555555555544433222
Q ss_pred HHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc-----------HHH
Q 008818 453 AWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA-----------AHI 519 (552)
Q Consensus 453 ~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~ 519 (552)
|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+.+|++++++.|++ ..+
T Consensus 258 -----~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 258 -----GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 2233444555555555555332 3333456667778899999999999999999999988 899
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 520 WANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 520 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
|..+|.++..+|++++|..+++++++.+..
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 999999999999999999999999988754
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.9e-31 Score=263.33 Aligned_cols=388 Identities=11% Similarity=0.009 Sum_probs=258.1
Q ss_pred hHHHHhhhchhhHhhhhhhhhhhhh---------CCCCccccccCCCccchhHHhHHHHHHHHHHHHHh--------CCC
Q 008818 93 EGKKINKLGKCRSRISSKMDSALEF---------GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK--------MPK 155 (552)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~---------~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~--------~p~ 155 (552)
-|..+..+|+...++ ..|++|+++ .|.....|..+|.+ +...+.++.|...+++++++ ++.
T Consensus 57 Lg~~~~~~G~~~eAl-~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~-y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 57 LAYLKHLKGQNEAAL-ECLRKAEELIQQEHADQAEIRSLVTWGNYAWV-YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHHHHHhcCccccchHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 466677778777776 888888876 33344455667777 78889999999999998876 346
Q ss_pred ChHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHH
Q 008818 156 NAHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 233 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 233 (552)
.+.++..+|.++...| ++++|+.+|+++++++|++ +. ++..++.++..++. .++.++|
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~------~~~~~~~~~~~l~~--------~~~~~~a 194 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PE------FTSGLAIASYRLDN--------WPPSQNA 194 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HH------HHHHHHHHHHHHHH--------SCCCCCT
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HH------HHHHHHHHHHHhcC--------chHHHHH
Confidence 6789999998887654 6999999999999997764 22 12223322222111 1334889
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 234 LSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 309 (552)
Q Consensus 234 ~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (552)
+..|+++++++|+++.++..+|..+.. .|++++|+.+|++++..+|.+..++..+|.+|...|++++|+..|++++
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999999999999999998877665 4678899999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 008818 310 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 389 (552)
Q Consensus 310 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 389 (552)
+.+|++..++..+|.++........ .......+......+.+++|+..|++++..+|.+..++..+|.+|...|++++
T Consensus 275 ~~~p~~~~~~~~lg~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 275 EYIPNNAYLHCQIGCCYRAKVFQVM--NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 9999999999999998864322111 11122234444456678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchH---HHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhh
Q 008818 390 SGKCLEKAAKLEPNCMSTR---YAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 466 (552)
Q Consensus 390 A~~~~~~al~~~p~~~~~~---~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (552)
|+.+|++++.++|++.... +.++...... ......+...+.+.+.. .+..... .+.
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Ai~~y~kal~i----~~~~~~~----------~~~ 411 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ-------MKCEDKAIHHFIEGVKI----NQKSREK----------EKM 411 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT-------SSCHHHHHHHHHHHHHS----CCCCHHH----------HHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhc----CcccHHH----------HHH
Confidence 9999999999988765331 2222111111 01122233333333332 2222221 111
Q ss_pred HHHHHHHHHh--hhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 008818 467 VAAAFETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 525 (552)
Q Consensus 467 ~~~A~~~~~~--~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 525 (552)
...+...+.+ ..++....++..+|.++...|++++|+.+|++|+++.|.++.++..+|.
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 2222333333 3346667889999999999999999999999999999999999988874
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=4.8e-30 Score=262.42 Aligned_cols=350 Identities=14% Similarity=0.055 Sum_probs=286.0
Q ss_pred hhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHH-----------
Q 008818 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAH----------- 160 (552)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~----------- 160 (552)
.-+..+..+|+...++ ..|+++++.+|+....+..+|.+ ....+.++.|...++ .+..+|+....+
T Consensus 64 ~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (537)
T 3fp2_A 64 NISACYISTGDLEKVI-EFTTKALEIKPDHSKALLRRASA-NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNK 140 (537)
T ss_dssp HHHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCchHHHHHHHHHH-HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHH
Confidence 3566677788888886 89999999999999999999999 888999999999995 776666644322
Q ss_pred ---------------------------------------------------------HHHHHH--------HHHcCCchH
Q 008818 161 ---------------------------------------------------------FLLGLM--------YQRLGQPLK 175 (552)
Q Consensus 161 ---------------------------------------------------------~~lg~~--------~~~~g~~~~ 175 (552)
..++.+ ....|++++
T Consensus 141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 222222 223357899
Q ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHH
Q 008818 176 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 255 (552)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 255 (552)
|+..|+++++..|++. ......+.++..++.+ +...|++++|+..|+++++.+|+ ..++..+|
T Consensus 221 A~~~~~~~l~~~p~~~-----~~~~~~~~~~~~~g~~-----------~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~ 283 (537)
T 3fp2_A 221 STDMYHSLLSANTVDD-----PLRENAALALCYTGIF-----------HFLKNNLLDAQVLLQESINLHPT-PNSYIFLA 283 (537)
T ss_dssp HHHHHHHHHC--CCCH-----HHHHHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCcc-----hhhHHHHHHHHHHHHH-----------HHhcccHHHHHHHHHHHHhcCCC-chHHHHHH
Confidence 9999999998876531 1122334445555555 44556669999999999999999 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc
Q 008818 256 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 335 (552)
Q Consensus 256 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 335 (552)
.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-------- 355 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY-------- 355 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH--------
T ss_pred HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 008818 336 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 415 (552)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 415 (552)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++...+..++
T Consensus 356 -------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--- 419 (537)
T 3fp2_A 356 -------------KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG--- 419 (537)
T ss_dssp -------------HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH---
T ss_pred -------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH---
Confidence 8999999999999999999999999999999999999999999999999999887665443322
Q ss_pred HHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhch----------hhHHHHHHHHHhhhc--chhh
Q 008818 416 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH----------HEVAAAFETEENELS--KMEE 483 (552)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~~l~--~~~~ 483 (552)
.+..++.++... |++++|+..+.+.+. +...
T Consensus 420 -------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 420 -------------------------------------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred -------------------------------------HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 245566667777 999999999999664 6666
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Q 008818 484 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWAN 522 (552)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 522 (552)
.+++.+|.++...|++++|+.+|+++++++|+.......
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 889999999999999999999999999999998766543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.5e-30 Score=243.25 Aligned_cols=259 Identities=14% Similarity=0.067 Sum_probs=239.3
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSA 302 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~ 302 (552)
++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 111 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHAR 111 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 3455778999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008818 303 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 382 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 382 (552)
.+|++++..+|.+..++..+|.++. ..|++++|+..|+++++..|++...+..+|.++.
T Consensus 112 ~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 112 RYLSKATTLEKTYGPAWIAYGHSFA---------------------VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHTTCTTCTHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999999999999999998888 8999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHh
Q 008818 383 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 462 (552)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (552)
..|++++|+.+|++++..+|++. .++..+|.++.
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~----------------------------------------------~~~~~l~~~~~ 204 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDP----------------------------------------------FVMHEVGVVAF 204 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCH----------------------------------------------HHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCCh----------------------------------------------HHHHHHHHHHH
Confidence 99999999999999999988753 46778888999
Q ss_pred chhhHHHHHHHHHhhhc-----------chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 008818 463 THHEVAAAFETEENELS-----------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 531 (552)
Q Consensus 463 ~~~~~~~A~~~~~~~l~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 531 (552)
..|++++|+..+.+.+. +....+++.+|.++...|++++|+.+|+++++++|+++.++..+|.++...|
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc
Confidence 99999999999999776 3334678899999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 008818 532 DHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 532 ~~~~A~~~~~~al~l~~~ 549 (552)
++++|+.+|++++++.|.
T Consensus 285 ~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 285 NFENAVDYFHTALGLRRD 302 (330)
T ss_dssp CHHHHHHHHHTTTTTCSC
T ss_pred cHHHHHHHHHHHHccCCC
Confidence 999999999999988764
No 18
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=2.7e-29 Score=241.37 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=218.8
Q ss_pred hCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHH
Q 008818 152 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 231 (552)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (552)
.+|++..+|..+|.++...|++++|+..|++++++
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------------------------------------------- 126 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------------------------------------------- 126 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---------------------------------------------
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---------------------------------------------
Confidence 68899999999999999999998888888888775
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
+|++..+|+.+|.++..+|+ +++|+.+|++++.++|++..+|+++|.++..+|++++|+..|+++++
T Consensus 127 ------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 127 ------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred ------------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56778899999999999997 99999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCChHH
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TGDHRS 389 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~ 389 (552)
++|++..+|.++|.++. ..|++++|+.+|+++++++|++..+|+++|.++.. .|.+++
T Consensus 195 ldP~~~~a~~~lg~~~~---------------------~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 195 QDAKNYHAWQHRQWVIQ---------------------EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HCTTCHHHHHHHHHHHH---------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hCccCHHHHHHHHHHHH---------------------HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999988 88999999999999999999999999999999999 555588
Q ss_pred H-----HHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhch
Q 008818 390 S-----GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 464 (552)
Q Consensus 390 A-----~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (552)
| +.+|++++.++|++..+|+ .++.++...
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~----------------------------------------------~l~~ll~~~ 287 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWN----------------------------------------------YLKGILQDR 287 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHH----------------------------------------------HHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHH----------------------------------------------HHHHHHHcc
Confidence 8 5899999999998865544 444445444
Q ss_pred h--hHHHHHHHHHhh-hcchhhhhhhhHHHHHHhhh---------hHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHc
Q 008818 465 H--EVAAAFETEENE-LSKMEECAGAGESAFLDQAS---------AVNVAKECLLAA-LKADPKAAHIWANLANAYYLT 530 (552)
Q Consensus 465 ~--~~~~A~~~~~~~-l~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~ 530 (552)
| ++++|+..+... ..+....++..+|.++.+.| .+++|+.+|+++ ++++|.....|..++..+...
T Consensus 288 g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 288 GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 4 466666666553 23444456667888887764 369999999999 999999999999999988653
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=3.8e-30 Score=249.57 Aligned_cols=271 Identities=16% Similarity=0.141 Sum_probs=211.1
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
+...++.+|.++...|++++|+..|+++++..|+. ..++..+|.++. ..|++++|+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~-----------~~g~~~~A~~ 120 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD------------AEAWQFLGITQA-----------ENENEQAAIV 120 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC------------HHHHHHHHHHHH-----------HCCCHHHHHH
Confidence 34559999999999999999999999999986543 233445555533 4455588888
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH----------HHHHHHcCCHHHHHHHH
Q 008818 236 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL----------GIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 236 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~ 305 (552)
.|+++++.+|+++.++..+|.+|...|++++|+.+|+++++++|++...+..+ |.++...|++++|+..|
T Consensus 121 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888888888888888888888888888888888888887765555444 88888888888888888
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 008818 306 QDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 383 (552)
Q Consensus 306 ~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 383 (552)
++++..+|+ ++.++..+|.++. ..|++++|+..|+++++.+|+++.+|..+|.++..
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFH---------------------LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCccCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888888 7888888887777 78888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhc
Q 008818 384 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 463 (552)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
.|++++|+.+|+++++++|++..++
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~------------------------------------------------------- 284 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSR------------------------------------------------------- 284 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHH-------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHH-------------------------------------------------------
Confidence 8888888888888888888764332
Q ss_pred hhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcC
Q 008818 464 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTG 531 (552)
Q Consensus 464 ~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g 531 (552)
+.+|.++...|++++|+.+|++++++.|+ +..+|..++.++...|
T Consensus 285 -----------------------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 285 -----------------------YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp -----------------------HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 33444777888888889999999988876 3678999999999999
Q ss_pred ChhHHHHHHHHHHHHhc
Q 008818 532 DHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 532 ~~~~A~~~~~~al~l~~ 548 (552)
+.+.|..+.++.++.+.
T Consensus 342 ~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 342 QPELFQAANLGDLDVLL 358 (365)
T ss_dssp CHHHHHHHHTTCCGGGT
T ss_pred cHHHHHHHHHhhHHHHH
Confidence 99999998888766654
No 20
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=3.6e-30 Score=247.45 Aligned_cols=256 Identities=11% Similarity=0.046 Sum_probs=226.8
Q ss_pred hhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhccc
Q 008818 114 ALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ-PLKAVSSYEKAEEILLRCEA 192 (552)
Q Consensus 114 al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 192 (552)
+|.+.|+....+..+|.+ ....+.++.|...+.++++.+|++..+|+.+|.++..+|+ +++|+..|+++++++|++
T Consensus 89 ai~~~p~~~~a~~~lg~~-~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-- 165 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAV-LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-- 165 (382)
T ss_dssp EECCCHHHHHHHHHHHHH-HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred hhhCChhhHHHHHHHHHH-HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--
Confidence 455566666667777766 6677888999999999999999999999999999999997 999999999999997754
Q ss_pred cccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 193 DIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 272 (552)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 272 (552)
..+++.+|.++..+|+. ++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+
T Consensus 166 ----------~~a~~~~g~~~~~~g~~-----------~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 166 ----------YQVWHHRRVLVEWLRDP-----------SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp ----------HHHHHHHHHHHHHHTCC-----------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred ----------HHHHHHHHHHHHHccCH-----------HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 35567777776666665 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchh
Q 008818 273 SLLAVDPNNCDCIGNLGIAYFQ-SGDMEQS-----AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 346 (552)
Q Consensus 273 ~al~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (552)
++++++|++..+|+++|.++.. .|.+++| +.+|++++.++|++..+|..++.++.
T Consensus 225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~------------------- 285 (382)
T 2h6f_A 225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ------------------- 285 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-------------------
Confidence 9999999999999999999999 5555777 59999999999999999999999887
Q ss_pred HHHhc--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HhhCCCCcchHHHHHHH
Q 008818 347 LDQAS--AVNVAKECLLAALKADPKAAHIWANLANAYYLTG--------D-HRSSGKCLEKA-AKLEPNCMSTRYAVAVS 414 (552)
Q Consensus 347 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~ 414 (552)
..| ++++|++.+.++ +.+|++..++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++..
T Consensus 286 --~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 286 --DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp --TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred --ccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 445 689999999998 999999999999999999985 2 59999999999 99999998888777654
Q ss_pred H
Q 008818 415 R 415 (552)
Q Consensus 415 ~ 415 (552)
.
T Consensus 363 l 363 (382)
T 2h6f_A 363 L 363 (382)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=5.1e-29 Score=237.50 Aligned_cols=272 Identities=11% Similarity=0.109 Sum_probs=201.2
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
+...++.+|..+...|++++|+..|+++++..|+. ...+..++.++ ...|++++|+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~-----------~~~~~~~~A~~ 76 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER------------EEAWRSLGLTQ-----------AENEKDGLAII 76 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHH-----------HHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHH-----------HHcCCHHHHHH
Confidence 34567889999999999999999999988875432 12223333332 23344577777
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCCHHH
Q 008818 236 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL--------------GI-AYFQSGDMEQ 300 (552)
Q Consensus 236 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~ 300 (552)
.|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+...+..+ +. ++...|++++
T Consensus 77 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 77 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHH
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 77777777777777777777777777777777777777777777766666555 55 5667777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 301 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 301 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
|+..++++++..|.+..++..+|.++. ..|++++|+..++++++.+|++..++..+|.+
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYN---------------------LSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 777777777777777777777777666 67777777777777777777777777777777
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHH
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 460 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
+...|++++|+..|+++++..|++..
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~------------------------------------------------------ 241 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVR------------------------------------------------------ 241 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHH------------------------------------------------------
Confidence 77777777777777777777665432
Q ss_pred HhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHH
Q 008818 461 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYY 528 (552)
Q Consensus 461 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~ 528 (552)
+++.+|.++...|++++|+.+|+++++..|+ +..+|..+|.++.
T Consensus 242 ------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 242 ------------------------VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 2334555788899999999999999999999 8999999999999
Q ss_pred HcCChhHHHHHHHHHHHHhcc
Q 008818 529 LTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 529 ~~g~~~~A~~~~~~al~l~~~ 549 (552)
..|++++|..+++++++.++.
T Consensus 298 ~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 298 VMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HTTCHHHHHHHTTCCSHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhcch
Confidence 999999999999999998865
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1.4e-28 Score=238.82 Aligned_cols=259 Identities=17% Similarity=0.149 Sum_probs=229.7
Q ss_pred CchhHHHHHH-HHHHHHhcCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008818 226 EPEELEEILS-KLKESMQSDTRQA----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 300 (552)
Q Consensus 226 ~~~~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 300 (552)
-.|++++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4567799999 9999998888764 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHH-----
Q 008818 301 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA----- 375 (552)
Q Consensus 301 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----- 375 (552)
|+..|+++++++|++..++..+|.++. ..|++++|+..|++++...|.+...+.
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFT---------------------NESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 999999999999999999999999888 899999999999999999999776665
Q ss_pred -----------HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCC
Q 008818 376 -----------NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 444 (552)
Q Consensus 376 -----------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (552)
.++.++ ..|++++|+..|++++..+|+..
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~--------------------------------------- 215 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI--------------------------------------- 215 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC---------------------------------------
T ss_pred hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc---------------------------------------
Confidence 566666 99999999999999999998732
Q ss_pred CCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Q 008818 445 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWAN 522 (552)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 522 (552)
.+.++..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++++|+++.++..
T Consensus 216 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 216 -----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 135678889999999999999999999665 5556789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 523 LANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 523 lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
+|.+|...|++++|+.+|++++++.+..
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999998754
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=5.4e-28 Score=215.30 Aligned_cols=211 Identities=16% Similarity=0.180 Sum_probs=173.3
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 325 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
++...... .+......|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++++++ ++
T Consensus 82 ~~~~~~~~----------~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 82 AYVALYRQ----------AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp HHHHHHHT----------CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHhhhh----------hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 99821000 00011122999999999999999999999999999999999999999999999999998 65
Q ss_pred cchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhh
Q 008818 405 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 484 (552)
Q Consensus 405 ~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 484 (552)
+.+++
T Consensus 151 ~~~~~--------------------------------------------------------------------------- 155 (217)
T 2pl2_A 151 PEIRS--------------------------------------------------------------------------- 155 (217)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 54333
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008818 485 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 544 (552)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 544 (552)
.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++-
T Consensus 156 ---~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ---ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 334478889999999999999999999999999999999999999999999998864
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=6.8e-28 Score=233.66 Aligned_cols=250 Identities=18% Similarity=0.118 Sum_probs=217.1
Q ss_pred HHHHHHHhcCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 235 SKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 235 ~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
..+.+.+...+.+ ...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4445555444444 445999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH----------HHH
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL----------ANA 380 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~ 380 (552)
++|++..++..+|.++. ..|++++|+..|+++++++|++...+..+ |.+
T Consensus 128 ~~p~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYT---------------------NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp HCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred cCCCCHHHHHHHHHHHH---------------------ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence 99999999999999988 89999999999999999999876666555 999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHH
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 460 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
+...|++++|+.+|++++.++|+.. ++.++..+|.+
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~~~--------------------------------------------~~~~~~~l~~~ 222 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGDMI--------------------------------------------DPDLQTGLGVL 222 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCSSC--------------------------------------------CHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHhCcCcc--------------------------------------------CHHHHHHHHHH
Confidence 9999999999999999999998731 23567888999
Q ss_pred HhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHH
Q 008818 461 QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 538 (552)
Q Consensus 461 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 538 (552)
+...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++++|+++.++..+|.+|...|++++|+.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999665 55667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 008818 539 CLEKVLMVYCS 549 (552)
Q Consensus 539 ~~~~al~l~~~ 549 (552)
+|++++++.+.
T Consensus 303 ~~~~al~~~~~ 313 (365)
T 4eqf_A 303 NFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhCcc
Confidence 99999999875
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.7e-25 Score=223.96 Aligned_cols=349 Identities=15% Similarity=0.069 Sum_probs=282.9
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 137 EKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR----LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 137 ~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
++++.|...++++.+. .++.+++.||.+|.. .+++++|+.+|+++.+.. .+ ..+..++.+
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~------~a~~~Lg~~ 120 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--------LP------QAQQNLGVM 120 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CH------HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CH------HHHHHHHHH
Confidence 4566677777777655 689999999999999 999999999999998752 11 223344444
Q ss_pred ccc-cCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 008818 213 PES-SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGN 287 (552)
Q Consensus 213 ~~~-~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 287 (552)
|.. .| ..+++++|+..|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.
T Consensus 121 y~~g~g--------~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~ 188 (490)
T 2xm6_A 121 YHEGNG--------VKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQ 188 (490)
T ss_dssp HHHTSS--------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHcCCC--------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 322 11 146789999999999875 468899999999998 89999999999999986 57999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHH
Q 008818 288 LGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 363 (552)
Q Consensus 288 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 363 (552)
+|.+|.. .+++++|+.+|+++++. .++.++..+|.++....+ ..+++++|+.+|+++
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g-----------------~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIG-----------------VTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-----------------CCCCHHHHHHHHHHH
Confidence 9999998 89999999999999875 578889999988872110 278999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHH
Q 008818 364 LKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 439 (552)
Q Consensus 364 l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~ 439 (552)
++. .++.+++.+|.+|.. .+++++|+.+|+++.+. +++.+.+.++......... .......+...+.+.
T Consensus 250 ~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g---~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 250 AEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG---VAKNREQAISWYTKS 322 (490)
T ss_dssp HTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT---BCCCHHHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC---CcCCHHHHHHHHHHH
Confidence 875 568899999999999 99999999999999876 5667777777655432111 112233333334444
Q ss_pred hhcCCCCCCCCHHHHHhHHHHHhchh---hHHHHHHHHHhhhcchhhhhhhhHHHHHHh----hhhHHHHHHHHHHHHHh
Q 008818 440 LREGDPVQIEPPIAWAGFAAVQKTHH---EVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKA 512 (552)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 512 (552)
... .++.++..+|.++...| ++++|+..|++++...+..+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 323 ~~~------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 323 AEQ------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHT------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred Hhc------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 433 35689999999998755 899999999999988888999999999999 89999999999999986
Q ss_pred CCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHh
Q 008818 513 DPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 513 ~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~ 547 (552)
. ++.++++||.+|.. .+++++|+.+|+++++..
T Consensus 397 ~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 397 G--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 4 69999999999998 899999999999999987
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=4.1e-27 Score=209.59 Aligned_cols=200 Identities=17% Similarity=0.168 Sum_probs=170.5
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHH
Q 008818 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 233 (552)
Q Consensus 154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 233 (552)
|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++. ..|++++|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~~~-----------~~g~~~~A 58 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD------------PEALYWLARTQL-----------KLGLVNPA 58 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------------HHHHHHHHHHHH-----------HTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHH-----------HcCCHHHH
Confidence 7889999999999999999999999999999997654 234455666644 44566999
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 234 LSKLKESMQSDTRQAVVWNTLGLILLKS-----------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 234 ~~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
+..|+++++.+|+++.++..+|.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+
T Consensus 59 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 59 LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008818 303 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 382 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 382 (552)
..|+++++++ +++.++..+|.++. ..|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 139 ~~~~~al~~~-~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 139 ASLKQALALE-DTPEIRSALAELYL---------------------SMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999 99999999999988 9999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHH
Q 008818 383 LTGDHRSSGKCLEKAA 398 (552)
Q Consensus 383 ~~~~~~~A~~~~~~al 398 (552)
..|++++|+..|+++-
T Consensus 197 ~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 197 LKGKAEEAARAAALEH 212 (217)
T ss_dssp C---------------
T ss_pred HccCHHHHHHHHHHHh
Confidence 9999999999998865
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.9e-25 Score=223.74 Aligned_cols=377 Identities=12% Similarity=-0.029 Sum_probs=297.5
Q ss_pred hhhHhhhhhhhhhhhhCCCCccccccCCCccchh----HHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCc
Q 008818 102 KCRSRISSKMDSALEFGVDADGDQSGLGTSSSSR----EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR----LGQP 173 (552)
Q Consensus 102 ~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~----~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~----~g~~ 173 (552)
+...++ ..|.++++. ....+++.+|.. +.. .++++.|...++++.+. .++.+++.||.+|.. .+++
T Consensus 58 ~~~~A~-~~~~~a~~~--~~~~a~~~Lg~~-y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 58 DLTQAM-DWFRRAAEQ--GYTPAEYVLGLR-YMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CHHHHH-HHHHHHHHT--TCHHHHHHHHHH-HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHH-HHHHHHHHC--CCHHHHHHHHHH-HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 333343 566777665 445667777776 555 67889999999988764 689999999999999 8999
Q ss_pred hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHH
Q 008818 174 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 253 (552)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 253 (552)
++|+.+|+++.+.. . ...+..++.+|.. |.. ..+++++|+..|+++++. .++.+++.
T Consensus 132 ~~A~~~~~~a~~~~--------~------~~a~~~Lg~~y~~-g~g------~~~d~~~A~~~~~~a~~~--~~~~a~~~ 188 (490)
T 2xm6_A 132 AESVKWFRLAAEQG--------R------DSGQQSMGDAYFE-GDG------VTRDYVMAREWYSKAAEQ--GNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTT--------C------HHHHHHHHHHHHH-TSS------SCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHHCC--------C------HHHHHHHHHHHHc-CCC------CCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 99999999998752 1 1233444444322 110 246789999999999986 56889999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 254 LGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 254 la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 264 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 9999999 89999999999999886 578999999999997 89999999999999875 578889999988
Q ss_pred HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhh
Q 008818 326 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-----GDHRSSGKCLEKAAKL 400 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~ 400 (552)
+....+ ..+++++|+.+|+++++. .++.+++.+|.+|... +++++|+.+|+++++.
T Consensus 265 y~~g~~-----------------~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 265 LEQGLA-----------------GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHHTTT-----------------SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHCCCC-----------------CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 872100 278999999999999875 5688999999999998 9999999999999987
Q ss_pred CCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhc----hhhHHHHHHHHHh
Q 008818 401 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEVAAAFETEEN 476 (552)
Q Consensus 401 ~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~ 476 (552)
. +..+++.++...... ........+...+.+.... .++.+++.+|.++.. .+++++|+..|++
T Consensus 326 ~--~~~a~~~lg~~y~~~-----g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 326 G--DATAQANLGAIYFRL-----GSEEEHKKAVEWFRKAAAK------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp T--CHHHHHHHHHHHHHS-----CCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHhC-----CCcccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4 566777777765542 1223344455555555443 457899999999999 8999999999999
Q ss_pred hhcchhhhhhhhHHHHHHh----hhhHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008818 477 ELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADP---KAAHIWANLANAYYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 477 ~l~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 545 (552)
++...+..+++.+|.+|.. .+++++|+.+|+++++.+| +++.++.++|.++... ...|....++.++
T Consensus 393 A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 393 AAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAELLSQQYIE 466 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHHHHHHHHHH
Confidence 9988889999999999998 8999999999999999994 4899999999987653 3444433443333
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=2.2e-26 Score=213.19 Aligned_cols=221 Identities=11% Similarity=0.095 Sum_probs=115.7
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
.+|+++.++..+|.++...|++++|+..|++++. .|.+ ..++..+|.++...|++++|+..|+++++.+|.+..+
T Consensus 32 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 110 (272)
T 3u4t_A 32 KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110 (272)
T ss_dssp TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH
Confidence 3444444455555555555555555555555554 2222 2234555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 319 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
+..+|.++. ..|++++|+..|+++++.+|.++.++..+|...+..+++++|+.+|++++
T Consensus 111 ~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 111 YGQIGSYFY---------------------NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444 45555555555555555555555555555533333335555555555555
Q ss_pred hhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhh---HHHHHHHHH
Q 008818 399 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEE 475 (552)
Q Consensus 399 ~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~ 475 (552)
+++|++..+++.+ |.++...++ +++|+..+.
T Consensus 170 ~~~p~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 170 ELKPNIYIGYLWR----------------------------------------------ARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHSTTCHHHHHHH----------------------------------------------HHHHHHHSTTCSSCTTHHHHH
T ss_pred HhCccchHHHHHH----------------------------------------------HHHHHHcCcchhhHHHHHHHH
Confidence 5555443222222 222222222 222232222
Q ss_pred hhhcc----------hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 008818 476 NELSK----------MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 531 (552)
Q Consensus 476 ~~l~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 531 (552)
+++.. ....++..+|.++...|++++|+.+|+++++++|+++.++..++.+....+
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 22211 112467788999999999999999999999999999999999988876544
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=206.50 Aligned_cols=227 Identities=17% Similarity=0.177 Sum_probs=173.9
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
.+.++..+|.+++..|++++|+.+|+++++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------------------------------- 34 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------------------------------------- 34 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------------------------------------------------
Confidence 3567777788888888777777777777764
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 236 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 236 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
+ .++.++..+|.++...|++++|+.+|++++.++|++ +.++..+|.++...|++++|+..|+++
T Consensus 35 --------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 35 --------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp --------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 345678888888888888888888888888887766 678888888888888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 388 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 388 (552)
+.+.|. +.++. ..|++++|+..+++++..+|.+..++..+|.++...|+++
T Consensus 106 ~~~~~~--------~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 106 LTEHRT--------ADILT---------------------KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHCCC--------HHHHH---------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhcCch--------hHHHH---------------------HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 888776 22333 6777888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHH
Q 008818 389 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVA 468 (552)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (552)
+|+.+|++++..+|++...+ .
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~----------------------------------------------~------------- 177 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGY----------------------------------------------S------------- 177 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHH----------------------------------------------H-------------
T ss_pred HHHHHHHHHHhcCcccHHHH----------------------------------------------H-------------
Confidence 88888888888887654222 2
Q ss_pred HHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 469 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 469 ~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++++.
T Consensus 178 -------------------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 178 -------------------NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -------------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 233356666777777777777777777777777777777777777777777777777766
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=5.7e-26 Score=216.34 Aligned_cols=281 Identities=14% Similarity=0.113 Sum_probs=244.0
Q ss_pred hhhhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008818 90 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 169 (552)
Q Consensus 90 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~ 169 (552)
.-..+..+...|+...++ ..|+++++..|.....+..+|.+ ....+.++.+...+.++++.+|++..++..+|.++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAA-LAFEAVCQAAPEREEAWRSLGLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 345677888899988887 89999999999999999999988 8889999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccccc-CC-CccccccCchhHHHHHHHHHHHHhcCcch
Q 008818 170 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS-GD-NSLDKELEPEELEEILSKLKESMQSDTRQ 247 (552)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 247 (552)
.|++++|+..|+++++..|........ ..... ........+ +. . +...|++++|+..++++++..|.+
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSV-----NLQAD-VDIDDLNVQSEDFF----FAAPNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------------CC----TTSHHHHHHHHHHHHHHHHHSTTC
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHH-----HhHHH-HHHHHHHHHHHhHH----HHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999987654221100 00000 000000001 22 2 568899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
+.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++..|++..++..+|.++.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHcCChHHHHHHHH
Q 008818 328 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLE 395 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~ 395 (552)
..|++++|+..|++++...|+ +..++..+|.++..+|++++|...++
T Consensus 252 ---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 252 ---------------------NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ---------------------HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 899999999999999999999 89999999999999999999999999
Q ss_pred HHHhhCCC
Q 008818 396 KAAKLEPN 403 (552)
Q Consensus 396 ~al~~~p~ 403 (552)
+++...|+
T Consensus 311 ~~l~~~~~ 318 (327)
T 3cv0_A 311 QNVEPFAK 318 (327)
T ss_dssp CCSHHHHH
T ss_pred HHHHhcch
Confidence 88876554
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=5e-26 Score=223.77 Aligned_cols=309 Identities=14% Similarity=0.079 Sum_probs=245.1
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHH
Q 008818 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 233 (552)
Q Consensus 154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 233 (552)
+....+++.+|.++...|++++|+.+|+++++..|.+ + .....++..+|.++. ..|++++|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------~--~~~~~~~~~l~~~~~-----------~~g~~~~A 66 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED------L--KTLSAIYSQLGNAYF-----------YLHDYAKA 66 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC------H--HHHHHHHHHHHHHHH-----------HTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccc------H--HHHHHHHHHHHHHHH-----------HhcCHHHH
Confidence 4566788999999999999999999999999985542 1 122345556666644 44566999
Q ss_pred HHHHHHHHhc------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC----
Q 008818 234 LSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGD---- 297 (552)
Q Consensus 234 ~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~---- 297 (552)
+..|++++.. .|....++..+|.++...|++++|+.+|++++.+.|.. ..++..+|.+|...|+
T Consensus 67 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 146 (406)
T 3sf4_A 67 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccc
Confidence 9999999876 45667899999999999999999999999999986643 5589999999999999
Q ss_pred ----------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHH
Q 008818 298 ----------------MEQSAKCFQDLILKD------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 355 (552)
Q Consensus 298 ----------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (552)
+++|+..|++++.+. +....++..+|.++. ..|++++
T Consensus 147 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~ 205 (406)
T 3sf4_A 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY---------------------LLGNFRD 205 (406)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTBHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH---------------------HccCHHH
Confidence 999999999998763 222345556666555 9999999
Q ss_pred HHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHH
Q 008818 356 AKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 429 (552)
Q Consensus 356 A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~ 429 (552)
|+.++++++++.+.. ..++..+|.++...|++++|+.+|++++.+.+.......
T Consensus 206 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------- 265 (406)
T 3sf4_A 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV-------------------- 265 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------------------
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH--------------------
Confidence 999999999886543 348999999999999999999999999987664322110
Q ss_pred hHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--------hhhhhhHHHHHHhhhhHHH
Q 008818 430 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLDQASAVNV 501 (552)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~~~~~~~~~ 501 (552)
...++..+|.++...|++++|+..+.+++.... ..++..+|.++...|++++
T Consensus 266 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 266 --------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred --------------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 124688899999999999999999998765322 3567899999999999999
Q ss_pred HHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 008818 502 AKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCLEK 542 (552)
Q Consensus 502 A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 542 (552)
|+.+|++++++.+ ....++..+|.++...|+...+...+.+
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 372 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMS 372 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 9999999998743 3478899999999999988554443333
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=2.2e-24 Score=219.54 Aligned_cols=404 Identities=12% Similarity=0.014 Sum_probs=274.4
Q ss_pred hhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhc
Q 008818 111 MDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC 190 (552)
Q Consensus 111 ~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (552)
++++|+.+|.+...|...+.. ...+.++.+...++++++.+|.+..+|..+|..+.+.|++++|...|++++...|+.
T Consensus 2 le~al~~~P~~~~~w~~l~~~--~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE--AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH--HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhCCCCHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 577888999988888876543 446789999999999999999999999999999999999999999999999986631
Q ss_pred cccccchhHHHHHHHh-hhhcc--------------cccccCCC--c------cc----------cccCchhHHHHHHHH
Q 008818 191 EADIARPELLSLVQIH-HAQCL--------------LPESSGDN--S------LD----------KELEPEELEEILSKL 237 (552)
Q Consensus 191 ~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~g~~--~------~~----------~~~~~~~~~~A~~~~ 237 (552)
+ -+...+... ...+. +....|.. . .. .+...|++++|...|
T Consensus 80 ~------lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 80 D------LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp H------HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 1 011111000 00000 00001100 0 00 001156667777777
Q ss_pred HHHHhcCcchH--HHHHHHHHHHH-------------HcCCHHHHHHHHHH------HHhc-----CCCC-------HHH
Q 008818 238 KESMQSDTRQA--VVWNTLGLILL-------------KSGRLQSSISVLSS------LLAV-----DPNN-------CDC 284 (552)
Q Consensus 238 ~~al~~~p~~~--~~~~~la~~~~-------------~~~~~~~A~~~~~~------al~~-----~p~~-------~~~ 284 (552)
++++. .|... ..|...+.... ..+++.+|...|+. .++. .|.. ...
T Consensus 154 ~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 154 QRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 77776 45432 23333222211 23445566555554 3332 2221 123
Q ss_pred HHHHHHHHHH----cCCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHH--
Q 008818 285 IGNLGIAYFQ----SGDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN-- 354 (552)
Q Consensus 285 ~~~la~~~~~----~g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 354 (552)
|......... .++. ..++..|++++..+|.++..|+.++.++.... ......|+++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~--------------~~~~~~g~~~~a 298 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSS--------------KLLAEKGDMNNA 298 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------HHHHTTTCCHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------hhhhhccchhhh
Confidence 3332222111 1222 47788999999999999999999998876210 0000167876
Q ss_pred -----HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHhHhhccCchH
Q 008818 355 -----VAKECLLAALK-ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQEPTE 427 (552)
Q Consensus 355 -----~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~l~~~~~~~~~~~ 427 (552)
+|+..|+++++ ..|++..+|..+|.++...|++++|...|++++++.|.+. .+|...+...... .
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------~ 370 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA--------E 370 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH--------H
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh--------c
Confidence 99999999997 8999999999999999999999999999999999999875 4565555432211 1
Q ss_pred HHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHH-HhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHH
Q 008818 428 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKE 504 (552)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~ 504 (552)
.+..+...+...+. ..+.....+...+.+ +...|++++|...|.+++. +.....|..++..+...|++++|..
T Consensus 371 ~~~~A~~~~~~Al~----~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 371 GIKSGRMIFKKARE----DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHT----CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred CHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 22333333333333 234455666665555 3458999999999999776 4455778899999999999999999
Q ss_pred HHHHHHHhCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 505 CLLAALKADPKAA----HIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 505 ~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.|++++...|.++ .+|...+......|+.+.+..+++++++.+|.
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9999999877654 48988899999999999999999999999974
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.94 E-value=1.3e-24 Score=201.54 Aligned_cols=245 Identities=15% Similarity=0.100 Sum_probs=212.2
Q ss_pred ccCchhHHHHHHHHHHHHhc----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 008818 224 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 299 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 299 (552)
....|++++|+..|+++++. .|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 55779999999999999997 46788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008818 300 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 379 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 379 (552)
+|+.+|++++..+|.+..++..+|.++. ..|++++|+..|+++++.+|++......++.
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALY---------------------YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999988 8999999999999999999999877766664
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHH
Q 008818 380 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 459 (552)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (552)
+ ...|++++|+..|++++...|++...+ .++.
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~ 185 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQWGW-----------------------------------------------NIVE 185 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCSTHH-----------------------------------------------HHHH
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcchHHH-----------------------------------------------HHHH
Confidence 4 667999999999999999988764322 2344
Q ss_pred HHhchhhHHHHHHHHHhhhcchh------hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 008818 460 VQKTHHEVAAAFETEENELSKME------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 533 (552)
Q Consensus 460 ~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 533 (552)
++...++.++|+..+.+.+...+ ...++.+|.++...|++++|+.+|+++++++|++.. ..+.++...|++
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~ 262 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLL 262 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHH
Confidence 45566667788888888666444 577889999999999999999999999999997744 347888999999
Q ss_pred hHHHHHH
Q 008818 534 RSSGKCL 540 (552)
Q Consensus 534 ~~A~~~~ 540 (552)
++|++.|
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 9999887
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.8e-24 Score=201.21 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=218.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
.+..|+|.+|+..+++....+|++ .+....++.+|..+|++++|+..++.. +|....++..++..+...|++++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345788999999999999999987 468888999999999999999988762 5666788899999999999999999
Q ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 303 KCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 303 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
+.+++++.. +|+++.+++.+|.++. ..|++++|+..|++ |.+..++..+|.+
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~---------------------~~g~~~~Al~~l~~-----~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYF---------------------YDQNPDAALRTLHQ-----GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHTT-----CCSHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHhC-----CCCHHHHHHHHHH
Confidence 999999976 6999999999999988 99999999999998 8899999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHH
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 460 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
+..+|++++|+..|+++++.+|++....... .|. .+
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~-----------------------------------------a~~---~l 175 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLAT-----------------------------------------AWV---SL 175 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------------------------------------HHH---HH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHH-----------------------------------------HHH---HH
Confidence 9999999999999999999999864222111 111 22
Q ss_pred HhchhhHHHHHHHHHhhhc--chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH-HH
Q 008818 461 QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-SG 537 (552)
Q Consensus 461 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~ 537 (552)
+...|++++|+..|++.+. +.+..+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++.+ +.
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3456889999999998665 55567788999999999999999999999999999999999999999999999976 56
Q ss_pred HHHHHHHHHhccc
Q 008818 538 KCLEKVLMVYCSS 550 (552)
Q Consensus 538 ~~~~~al~l~~~~ 550 (552)
.++++++++.|..
T Consensus 256 ~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 256 RYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 8999999888754
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=7.8e-26 Score=209.45 Aligned_cols=240 Identities=10% Similarity=0.072 Sum_probs=207.9
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
....+.++.|...++++++.+|+++.+++.+|.+|...|++++|+..|+++++. |.+ +.. ....+..+|.+
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~------~~~--~~~~~~~lg~~ 83 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNA------TKA--KSADFEYYGKI 83 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCT------TTC--CHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCc------hhH--HHHHHHHHHHH
Confidence 566778889999999999999999999999999999999999999999999983 321 111 12334455555
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
+ ...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++.+|.++.+++.+|...
T Consensus 84 ~-----------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 84 L-----------MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp H-----------HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred H-----------HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 4 44566699999999999999999999999999999999999999999999999999999999999555
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcC---HHHHHHHHHHHHhcC--
Q 008818 293 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA---VNVAKECLLAALKAD-- 367 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~-- 367 (552)
+..+++++|+..|+++++.+|++..++..+|.++. ..|+ +++|+..|+++++..
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~---------------------~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA---------------------AQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH---------------------HcCcchhhHHHHHHHHHHHHHHhc
Confidence 55669999999999999999999999999999888 6677 888999999999875
Q ss_pred -CC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 368 -PK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 368 -p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
|+ ...++..+|.+|...|++++|+.+|+++++++|++..++..+..
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 44 24789999999999999999999999999999999887765543
No 36
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.6e-25 Score=220.65 Aligned_cols=282 Identities=17% Similarity=0.125 Sum_probs=231.8
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHH
Q 008818 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 233 (552)
Q Consensus 154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 233 (552)
+.....++.+|..+...|++++|+..|+++++..|++ +
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------~------------------------------------ 82 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED------L------------------------------------ 82 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC------H------------------------------------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC------h------------------------------------
Confidence 3445677788999999999999999999988864321 0
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008818 234 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307 (552)
Q Consensus 234 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (552)
.....++..+|.++...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++
T Consensus 83 -----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (411)
T 4a1s_A 83 -----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 011357888999999999999999999999887 566678899999999999999999999999
Q ss_pred HHhh------CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcC-----------------HHHHHHHHHHHH
Q 008818 308 LILK------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-----------------VNVAKECLLAAL 364 (552)
Q Consensus 308 al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~al 364 (552)
++.+ .+....++..+|.++. ..|+ +++|+.++++++
T Consensus 152 al~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 152 HLTLARQLGDRLSEGRALYNLGNVYH---------------------AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH---------------------HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHH---------------------HcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9987 3444556667777666 7888 999999999998
Q ss_pred hcC------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHH
Q 008818 365 KAD------PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 438 (552)
Q Consensus 365 ~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~ 438 (552)
++. +....++..+|.+|...|++++|+.+|++++.+.+.......
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------- 261 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA----------------------------- 261 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH-----------------------------
Confidence 763 335668999999999999999999999999988764322110
Q ss_pred HhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--------hhhhhhHHHHHHhhhhHHHHHHHHHHHH
Q 008818 439 ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLDQASAVNVAKECLLAAL 510 (552)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (552)
...++..+|.++...|++++|+..+.+++.... ..++..+|.++...|++++|+.+|++++
T Consensus 262 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 262 -----------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp -----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 124688999999999999999999998766433 4668899999999999999999999999
Q ss_pred HhCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 511 KADPK------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 511 ~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
++.+. ...++..+|.+|...|++++|+.+|+++++++.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 98554 3568999999999999999999999999998764
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=7.3e-25 Score=203.89 Aligned_cols=229 Identities=11% Similarity=0.074 Sum_probs=185.7
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 134 SREEKVSSLKTGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
...|.+..+...++++...+|++ .++...++.+|..+|++++|+..++.. . .|.. ..+..++..
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~--------~~~~----~a~~~la~~ 74 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S--------APEL----QAVRMFAEY 74 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S--------CHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C--------ChhH----HHHHHHHHH
Confidence 44566677777776666667776 358888999999999999999877551 1 1211 222233333
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 290 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 290 (552)
+...++.++|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+..++..+|.
T Consensus 75 -----------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~ 138 (291)
T 3mkr_A 75 -----------LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQ 138 (291)
T ss_dssp -----------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHH
T ss_pred -----------HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHH
Confidence 33456679999999999876 699999999999999999999999999998 899999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc
Q 008818 291 AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 370 (552)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (552)
++..+|++++|+..|+++++.+|++.......+.+.+ +...|++++|+..|+++++.+|++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-------------------~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL-------------------AAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------HHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-------------------HhCchHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999998654433332222 115689999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 008818 371 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 412 (552)
Q Consensus 371 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 412 (552)
+.+++.+|.++..+|++++|+..|++++.++|+++.++.+++
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999999999876554443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.7e-25 Score=202.99 Aligned_cols=233 Identities=14% Similarity=0.082 Sum_probs=206.2
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
....+.++.|...+.++++.+ .++.+++.+|.++...|++++|+..|++++++.|+.. ++......++..++.+
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-----ADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----cchHHHHHHHHHHHHH
Confidence 445567788888889999999 9999999999999999999999999999999987642 2233335566677776
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
+. ..|++++|+..|++++...|. +.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 89 ~~-----------~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 89 YH-----------KLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149 (258)
T ss_dssp HH-----------HTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HH-----------HcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 54 445569999999999999987 56778888999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 293 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+..|+++++.+|+++.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~ 208 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIADCNKAIEKDPNFVR 208 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999999999999999999888 899999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHH
Q 008818 373 IWANLANAYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAV 411 (552)
Q Consensus 373 ~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l 411 (552)
++..+|.++...|++++|+.+|+++++++ |++...+..+
T Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 209 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 99999999999999999999999999999 7776555444
No 39
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=1.1e-24 Score=217.37 Aligned_cols=224 Identities=18% Similarity=0.179 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL-QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
+.+++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|+.+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3458888899999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--
Q 008818 307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 384 (552)
Q Consensus 307 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-- 384 (552)
++++++|+ ..++..+|.++... ..+......|++++|+..|+++++++|++..+|..+|.+|..+
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQL------------QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTC------------CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHh------------ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 78899999988721 0122222339999999999999999999999999999999999
Q ss_pred ------CChHHHHHHHHHHHhhCC---CCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHH
Q 008818 385 ------GDHRSSGKCLEKAAKLEP---NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 455 (552)
Q Consensus 385 ------~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (552)
|++++|+.+|+++++++| ++..+
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------------------------------------------ 260 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDL------------------------------------------------ 260 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH------------------------------------------------
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHH------------------------------------------------
Confidence 999999999999999988 54433
Q ss_pred hHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH
Q 008818 456 GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 456 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 535 (552)
++.+|.++...|++++|+..|+++++++|+++.++..++.++...|++++
T Consensus 261 ------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 261 ------------------------------HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp ------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33344477788999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008818 536 SGKCLEK 542 (552)
Q Consensus 536 A~~~~~~ 542 (552)
|+..+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 9987654
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=2.2e-23 Score=193.07 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=208.0
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAAL 319 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 319 (552)
+|+++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 477889999999999999999999999999998 7889999999999999 999999999999999875 78899
Q ss_pred HHHHHHHHHhhcccccccccccccchhHHH----hcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHH
Q 008818 320 INYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSG 391 (552)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~ 391 (552)
..+|.++. . .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+
T Consensus 78 ~~lg~~~~---------------------~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 78 HLLGNLYY---------------------SGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp HHHHHHHH---------------------HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHh---------------------CCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 99999888 6 899999999999999874 79999999999999 99999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhc----hhhH
Q 008818 392 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEV 467 (552)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 467 (552)
.+|+++++..+ +.++..+|.++.. .+++
T Consensus 135 ~~~~~a~~~~~------------------------------------------------~~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 135 EYFTKACDLND------------------------------------------------GDGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HHHHHHHHTTC------------------------------------------------HHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHhcCc------------------------------------------------HHHHHHHHHHHHcCCCCCCCH
Confidence 99999998652 2356677777777 8999
Q ss_pred HHHHHHHHhhhcchhhhhhhhHHHHHHh----hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHH
Q 008818 468 AAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKC 539 (552)
Q Consensus 468 ~~A~~~~~~~l~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~ 539 (552)
++|+..+++++...+..+++.+|.++.. .+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+
T Consensus 167 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~ 244 (273)
T 1ouv_A 167 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIEN 244 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999999888888999999999999 9999999999999999976 8899999999999 9999999999
Q ss_pred HHHHHHHhcc
Q 008818 540 LEKVLMVYCS 549 (552)
Q Consensus 540 ~~~al~l~~~ 549 (552)
|++++++-+.
T Consensus 245 ~~~a~~~~~~ 254 (273)
T 1ouv_A 245 FKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHcCCH
Confidence 9999998653
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=214.32 Aligned_cols=265 Identities=16% Similarity=0.152 Sum_probs=224.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYF 293 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~ 293 (552)
++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+ .|....++..+|.++.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 345677799999999999999987 468899999999999999999999999887 3445778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhcccccccccccccchhHHHhcC---------------
Q 008818 294 QSGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA--------------- 352 (552)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 352 (552)
..|++++|+.++++++.+.|.. ..++..+|.++. ..|+
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH---------------------AKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------------HHHHTCC-------CCCCH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH---------------------HcCCcccccccchhhhhhh
Confidence 9999999999999999886643 235556666555 8888
Q ss_pred -----HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhh
Q 008818 353 -----VNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAER 421 (552)
Q Consensus 353 -----~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~ 421 (552)
+++|+..+.+++.+ .+....++..+|.++...|++++|+.+|++++.+.+.......
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------ 225 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------------ 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH------------
Confidence 99999999999886 3445678999999999999999999999999988665432110
Q ss_pred ccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--------hhhhhhHHHHH
Q 008818 422 SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFL 493 (552)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~ 493 (552)
...++..+|.++...|++++|+..+.+++...+ ..++..+|.++
T Consensus 226 ----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 226 ----------------------------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 124688999999999999999999999765322 35678999999
Q ss_pred HhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 494 DQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++...
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985543 678999999999999999999999999998754
No 42
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=3.2e-24 Score=204.82 Aligned_cols=279 Identities=17% Similarity=0.139 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 237 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 237 (552)
..++..|..+...|++++|+..|+++++..|++ +
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------~---------------------------------------- 39 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTED------L---------------------------------------- 39 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC------H----------------------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc------H----------------------------------------
Confidence 456677777777888877777777777763321 0
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 238 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 238 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
+....++..+|.++...|++++|+.++++++.+ .+....++..+|.++...|++++|+..+++++.+
T Consensus 40 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 112 (338)
T 3ro2_A 40 -------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112 (338)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 011457888999999999999999999999887 4445778999999999999999999999999987
Q ss_pred CCCCH------HHHHHHHHHHHHhhcccccccccccccchhHHHhcC--------------------HHHHHHHHHHHHh
Q 008818 312 DQNHP------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASA--------------------VNVAKECLLAALK 365 (552)
Q Consensus 312 ~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~ 365 (552)
.+... .++..+|.++. ..|+ +++|+..+++++.
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 113 SRELNDKVGEARALYNLGNVYH---------------------AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH---------------------HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHHH---------------------HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 65432 25555665555 7788 9999999999887
Q ss_pred c------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHH
Q 008818 366 A------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 439 (552)
Q Consensus 366 ~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~ 439 (552)
. .+....++..+|.++...|++++|+.++++++.+.+......
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------------- 220 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA------------------------------- 220 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH-------------------------------
Confidence 6 233567899999999999999999999999998765422111
Q ss_pred hhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--------hhhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 008818 440 LREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (552)
....++..+|.++...|++++|+..+.+.+.... ..++..+|.++...|++++|+.+++++++
T Consensus 221 ---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 221 ---------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp ---------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 0124688999999999999999999998765322 35677999999999999999999999998
Q ss_pred hCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 512 ADPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 512 ~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
+.+.. ..++..+|.+|...|++++|..+|++++++.++.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 76543 5689999999999999999999999999988653
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=4.3e-24 Score=194.01 Aligned_cols=210 Identities=10% Similarity=0.090 Sum_probs=177.6
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD 112 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHH
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 383 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 383 (552)
.|+++++..|.+..++..+|.++. ..|++++|+..++++++..|++..++..+|.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 113 MFEKALRAGMENGDLFYMLGTVLV---------------------KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHH---------------------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 999999999999999988888887 89999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhc
Q 008818 384 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 463 (552)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
.|++++|+..|++++...|++...+
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~------------------------------------------------------- 196 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAF------------------------------------------------------- 196 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHH-------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHH-------------------------------------------------------
Confidence 9999999999999999988764332
Q ss_pred hhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 008818 464 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 532 (552)
Q Consensus 464 ~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 532 (552)
+.+|.++...|++++|+.+|+++++++|++..++..++.+....|.
T Consensus 197 -----------------------~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 197 -----------------------YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp -----------------------HHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred -----------------------HHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 2334477788999999999999999999999999998887765543
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=8.2e-24 Score=183.33 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=158.2
Q ss_pred CChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHH
Q 008818 155 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 234 (552)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 234 (552)
+++.+|+.+|.+|..+|++++|+..|++++++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~------------------------------------------------ 34 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------------------------------------------------ 34 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------
Confidence 45678888888888888887777777777665
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
+|+++.++..+|.+|...|++++|+..+.+++...|++..++..+|.++...++++.|+..+.+++.++|+
T Consensus 35 ---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 105 (184)
T 3vtx_A 35 ---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV 105 (184)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 008818 315 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 394 (552)
Q Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 394 (552)
+..++..+|.++. ..|++++|+..|+++++++|+++.++..+|.+|..+|++++|+.+|
T Consensus 106 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 106 YADAYYKLGLVYD---------------------SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp CHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHH---------------------HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999888 8999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCc
Q 008818 395 EKAAKLEPNCM 405 (552)
Q Consensus 395 ~~al~~~p~~~ 405 (552)
+++++++|+++
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999764
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=1.4e-23 Score=181.93 Aligned_cols=142 Identities=18% Similarity=0.298 Sum_probs=135.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 246 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 246 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+|.+|...|++++|+..+.+++...|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 326 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+. ..++++.|+..+.+++..+|.+..++..+|.+|..+|++++|+..|+++++++|++.
T Consensus 83 ~~---------------------~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 83 NF---------------------MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HH---------------------HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 88 899999999999999999999999999999999999999999999999999999875
Q ss_pred chH
Q 008818 406 STR 408 (552)
Q Consensus 406 ~~~ 408 (552)
.++
T Consensus 142 ~~~ 144 (184)
T 3vtx_A 142 RAY 144 (184)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 46
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=6.7e-23 Score=208.64 Aligned_cols=365 Identities=10% Similarity=0.019 Sum_probs=268.3
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCcccccc
Q 008818 146 LVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 225 (552)
Q Consensus 146 l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (552)
++++++.+|.+..+|..++.. ...|++++|...|+++++..|.+ ..+|...+.. +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~------------~~~w~~~~~~-----------~~ 57 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSS------------GRFWKLYIEA-----------EI 57 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTC------------HHHHHHHHHH-----------HH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCC------------HHHHHHHHHH-----------HH
Confidence 567788999999999999984 78999999999999999987654 1223333333 23
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHH---
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSIS----VLSSLLAV---DPNNCDCIGNLGIAYFQ--- 294 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~--- 294 (552)
..|++++|...|++++...| +..+|..++. +....|++++|.+ .|++++.. +|....+|...+.....
T Consensus 58 ~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred hcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 44667999999999999999 5778888885 4456788877765 78888764 56778899888887765
Q ss_pred ------cCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHh---------------hcc-------------cccc--
Q 008818 295 ------SGDMEQSAKCFQDLILKDQNHP--AALINYAALLLCK---------------YGS-------------VLAG-- 336 (552)
Q Consensus 295 ------~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~---------------~~~-------------~~~~-- 336 (552)
.|++++|+..|++++. .|... ..|.......... ... ....
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred cccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7899999999999999 57653 2333222211000 000 0000
Q ss_pred ---c-----------ccccccchhHHH----hcC----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------cCCh
Q 008818 337 ---A-----------GANTGEGACLDQ----ASA----VNVAKECLLAALKADPKAAHIWANLANAYYL-------TGDH 387 (552)
Q Consensus 337 ---~-----------~~~~~~~~~~~~----~~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~ 387 (552)
+ ..+......... .++ ...++..|++++..+|.++.+|..+|.++.. .|++
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch
Confidence 0 000000000001 112 2478899999999999999999999999987 7998
Q ss_pred H-------HHHHHHHHHHh-hCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCH-HHHHhHH
Q 008818 388 R-------SSGKCLEKAAK-LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP-IAWAGFA 458 (552)
Q Consensus 388 ~-------~A~~~~~~al~-~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 458 (552)
+ +|+..|+++++ +.|++...+..++...... ..+..+...+.+.+. ..|.++ .+|..++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~--------g~~~~A~~~~~~al~----~~p~~~~~~~~~~~ 363 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR--------MKYEKVHSIYNRLLA----IEDIDPTLVYIQYM 363 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHH----SSSSCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc--------CCHHHHHHHHHHHhC----ccccCchHHHHHHH
Confidence 7 99999999997 8999988888877654332 122333333444443 245554 6899999
Q ss_pred HHHhchhhHHHHHHHHHhhhcchhh--hhhhhHHHH-HHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH
Q 008818 459 AVQKTHHEVAAAFETEENELSKMEE--CAGAGESAF-LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 459 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 535 (552)
.++...|++++|...|.+++...+. ..+...+.+ +...|++++|+..|+++++..|+++.+|..++.++...|+.++
T Consensus 364 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999999999998875443 333333333 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 008818 536 SGKCLEKVLMVYC 548 (552)
Q Consensus 536 A~~~~~~al~l~~ 548 (552)
|..+|++++...+
T Consensus 444 Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 444 TRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999998753
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=4.4e-23 Score=188.57 Aligned_cols=209 Identities=16% Similarity=0.181 Sum_probs=179.0
Q ss_pred hcCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008818 242 QSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 320 (552)
Q Consensus 242 ~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 320 (552)
..+|.+ +.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 356776 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008818 321 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 398 (552)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 398 (552)
.++.++. ..|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|++++
T Consensus 110 ~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 110 NYGGFLY---------------------EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHH---------------------HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888 89999999999999999 889999999999999999999999999999999
Q ss_pred hhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhh
Q 008818 399 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 478 (552)
Q Consensus 399 ~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 478 (552)
...|.+... +..+|
T Consensus 169 ~~~~~~~~~----------------------------------------------~~~la-------------------- 182 (252)
T 2ho1_A 169 RLNRNQPSV----------------------------------------------ALEMA-------------------- 182 (252)
T ss_dssp HHCSCCHHH----------------------------------------------HHHHH--------------------
T ss_pred hcCcccHHH----------------------------------------------HHHHH--------------------
Confidence 998876432 22333
Q ss_pred cchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 479 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 479 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.++...|++++|+.+|+++++..|++..++..++.++...|++++|..++++++++.+.
T Consensus 183 ------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 183 ------------DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp ------------HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------------HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 35556666777777777777777777777777777777777777777777777776654
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=2e-23 Score=189.67 Aligned_cols=205 Identities=13% Similarity=0.109 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
.+..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|.+..++..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 406 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 406 (552)
. ..|++++|+..|+++++..|.+..++..+|.++...|++++|+..|++++...|++..
T Consensus 102 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 102 V---------------------VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred H---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 8 8999999999999999999999999999999999999999999999999999887643
Q ss_pred hHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhh
Q 008818 407 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG 486 (552)
Q Consensus 407 ~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 486 (552)
.+
T Consensus 161 ~~------------------------------------------------------------------------------ 162 (243)
T 2q7f_A 161 AR------------------------------------------------------------------------------ 162 (243)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 32
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 487 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
+.+|.++...|++++|+..|+++++..|+++.++..+|.+|...|++++|+.+|++++++.+..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 2334477788999999999999999999999999999999999999999999999999987653
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=1.6e-22 Score=187.23 Aligned_cols=235 Identities=13% Similarity=0.084 Sum_probs=163.4
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
+|.++.+++.+|.+|...|++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------------------------------- 35 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---------------------------------------------- 35 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------------------------------------------
Confidence 5788999999999999999999999999988762
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKC 304 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 304 (552)
+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+
T Consensus 36 -------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 36 -------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 223456666666666 667777777777766653 56666677777766 6777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHH----hcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 305 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 305 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
|+++++. +++.++..+|.++. . .+++++|+.+|+++++.. +..++..+|.+
T Consensus 101 ~~~a~~~--~~~~a~~~lg~~~~---------------------~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 101 YSKACDL--KYAEGCASLGGIYH---------------------DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHH---------------------HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHc--CCccHHHHHHHHHH---------------------cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 7766665 35666666666665 4 666777777777766654 45666667777
Q ss_pred HHH----cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHh
Q 008818 381 YYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 456 (552)
Q Consensus 381 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (552)
|.. .+++++|+.+|+++++..+ +.++..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------------------------~~a~~~ 187 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKD------------------------------------------------SPGCFN 187 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC------------------------------------------------HHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC------------------------------------------------HHHHHH
Confidence 766 6677777777776665421 134555
Q ss_pred HHHHHhc----hhhHHHHHHHHHhhhcchhhhhhhhHHHHHHh----hhhHHHHHHHHHHHHHhCCCcHHHHH
Q 008818 457 FAAVQKT----HHEVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWA 521 (552)
Q Consensus 457 ~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~ 521 (552)
+|.++.. .+++++|+..+++++...+..+++.+|.++.. .+++++|+.+|++++++.|+++..+.
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666 66677777777666665566677788888888 88999999999999999887554443
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=1.6e-22 Score=181.14 Aligned_cols=207 Identities=11% Similarity=0.019 Sum_probs=171.8
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
..|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccccccchhHHHh-cCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
|.++. .. |++++|+..|+++++ ..|.+..++..+|.++...|++++|+.+|+++++
T Consensus 83 ~~~~~---------------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 83 GWFLC---------------------GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHH---------------------TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH---------------------HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98888 89 999999999999999 6777899999999999999999999999999999
Q ss_pred hCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc
Q 008818 400 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 479 (552)
Q Consensus 400 ~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 479 (552)
..|++.. ++..+|.
T Consensus 142 ~~~~~~~----------------------------------------------~~~~la~-------------------- 155 (225)
T 2vq2_A 142 AQPQFPP----------------------------------------------AFKELAR-------------------- 155 (225)
T ss_dssp HSTTCHH----------------------------------------------HHHHHHH--------------------
T ss_pred hCCCCch----------------------------------------------HHHHHHH--------------------
Confidence 9887642 2333333
Q ss_pred chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 480 KMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 480 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
++...|++++|+..++++++..| ++..++..++.++...|++++|..+++.++++.|
T Consensus 156 ------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 156 ------------TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp ------------HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 45555566666666666666666 6666666666666666666666666666555544
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=4.3e-23 Score=205.98 Aligned_cols=196 Identities=18% Similarity=0.132 Sum_probs=180.8
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccc
Q 008818 134 SREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP-LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 212 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 212 (552)
...+.++.+...+.......|.++.+++.+|.++...|++ ++|+.+|++++++
T Consensus 79 ~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-------------------------- 132 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-------------------------- 132 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------------------------
Confidence 4456677888888888888999999999999999999999 9999988888875
Q ss_pred ccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 213 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
+|+++.+|..+|.+|...|++++|+.+|+++++++|+ ..++..+|.++
T Consensus 133 -------------------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~ 180 (474)
T 4abn_A 133 -------------------------------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL 180 (474)
T ss_dssp -------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred -------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence 4566789999999999999999999999999999999 79999999999
Q ss_pred HHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHh--------cCHHH
Q 008818 293 FQS---------GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA--------SAVNV 355 (552)
Q Consensus 293 ~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 355 (552)
... |++++|+..|+++++++|++..+|..+|.++. .. |++++
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL---------------------SLYFNTGQNPKISQQ 239 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHHHHTTCCHHHHHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HHHHhhccccchHHH
Confidence 999 99999999999999999999999999999998 56 88999
Q ss_pred HHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 356 AKECLLAALKADP---KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 356 A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
|+..|+++++++| +++.+|.++|.+|..+|++++|+..|+++++++|++..++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999 9999999999999999999999999999999999875433
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=5.4e-23 Score=187.97 Aligned_cols=214 Identities=20% Similarity=0.191 Sum_probs=194.1
Q ss_pred hCCCC-hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhH
Q 008818 152 KMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 230 (552)
Q Consensus 152 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 230 (552)
.+|.+ +.+++.+|.++...|++++|+..|+++++..|.. ..++..++.++ ...|++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~-----------~~~~~~ 87 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------------ADAHAALAVVF-----------QTEMEP 87 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC------------HHHHHHHHHHH-----------HHTTCH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh------------HHHHHHHHHHH-----------HHcCCH
Confidence 45665 7899999999999999999999999999986543 23344555553 345666
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|+++
T Consensus 88 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 88889999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 388 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 388 (552)
++..|.+..++..++.++. ..|++++|+..++++++..|.+..++..++.++...|+++
T Consensus 168 ~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 168 LRLNRNQPSVALEMADLLY---------------------KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HhcCcccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH
Confidence 9999999999999999888 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchHH
Q 008818 389 SSGKCLEKAAKLEPNCMSTRY 409 (552)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~~~ 409 (552)
+|..+++++++..|++.....
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999876553
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=4.8e-23 Score=204.29 Aligned_cols=384 Identities=11% Similarity=0.001 Sum_probs=252.7
Q ss_pred hHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhH---HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008818 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKV---SSLKTGLVHVARKMPKNAHAHFLLGLMYQR 169 (552)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~---~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~ 169 (552)
.+....+.|+...++ ..|.++++. .+..+++.+|.+ +...+.. +.|...++++++. ++.+++.+|.++..
T Consensus 9 la~~~~~~g~~~~A~-~~~~~aa~~--g~~~A~~~Lg~~-y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQ-QNYQQLAEL--GYSEAQVGLADI-QVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHH-HHHHHHHHC--CCHHHHHHHHHH-HHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 456677778887776 888888776 456778888888 6667777 8888899888765 78899999997777
Q ss_pred cC-----CchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcC
Q 008818 170 LG-----QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 244 (552)
Q Consensus 170 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~ 244 (552)
.| ++++|+.+|+++++..+ +. +++.++.+|...+.. . .+ .+++..+.++..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~--------~~------A~~~Lg~~y~~~~~~------~-~~-~~a~~~~~~a~~-- 137 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE--------GN------TLIPLAMLYLQYPHS------F-PN-VNAQQQISQWQA-- 137 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC--------SS------CHHHHHHHHHHCGGG------C-TT-CCHHHHHHHHHH--
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC--------HH------HHHHHHHHHHhCCCC------C-CC-HHHHHHHHHHHH--
Confidence 76 78899999999998521 11 223344443333222 0 11 346666666553
Q ss_pred cchHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQS----SISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPA 317 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~ 317 (552)
+.++.+++.+|.+|...+.+++ +..+++.+...+|. +++.+|.+|...| ++++|+.+|+++....+....
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~ 214 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ 214 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH
Confidence 3457789999999999985554 44455555555544 9999999999999 999999999999999999998
Q ss_pred HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-H--HHcCChHHHHHHH
Q 008818 318 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA-Y--YLTGDHRSSGKCL 394 (552)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~ 394 (552)
.++.+|.++....+ ..+++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|
T Consensus 215 ~~~~Lg~~y~~g~~-----------------~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 215 RVDSVARVLGDATL-----------------GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHHTCGGG-----------------SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-----------------CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 88999998862111 2378999999999998 8899999999999 4 4689999999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhc----hhhHHHH
Q 008818 395 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEVAAA 470 (552)
Q Consensus 395 ~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A 470 (552)
+++.+. +++.+.+.++......... ......+. ..+.... +.++.+++.+|.+|.. ..++++|
T Consensus 275 ~~Aa~~--g~~~A~~~Lg~~y~~G~g~----~~d~~~A~----~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A 341 (452)
T 3e4b_A 275 DNGRAA--DQPRAELLLGKLYYEGKWV----PADAKAAE----AHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKA 341 (452)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHCSSS----CCCHHHHH----HHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCC----CCCHHHHH----HHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence 999865 4677777777655421110 01122222 2223322 5667788888887776 3478888
Q ss_pred HHHHHhhhcchhhhhhhhHHHHHHh----hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCChhHHHHHHHHHH
Q 008818 471 FETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TGDHRSSGKCLEKVL 544 (552)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al 544 (552)
+..|+++.......+.+.+|.+|.. ..++.+|+.+|+++.+..+ ..+...++.+... .++..+|....++..
T Consensus 342 ~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 342 LDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8888888877777888888888774 3478888888888877653 5566666666433 334556666665544
Q ss_pred H
Q 008818 545 M 545 (552)
Q Consensus 545 ~ 545 (552)
+
T Consensus 420 ~ 420 (452)
T 3e4b_A 420 A 420 (452)
T ss_dssp H
T ss_pred H
Confidence 4
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=2.8e-22 Score=188.79 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHc
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLK-------SGRL-------QSSISVLSSLLA-VDPNNCDCIGNLGIAYFQS 295 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 295 (552)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 296 GDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 296 g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
|++++|+..|++++++.|.+.. +|..++.++. +.|++++|+..|+++++..|....+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR---------------------RAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH---------------------HHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999887 8999998887 88999999999999999999998888
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHH
Q 008818 375 ANLANAYYL-TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 453 (552)
Q Consensus 375 ~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (552)
...+.+... .|++++|+.+|+++++.+|++. .+
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------------~~ 205 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----------------------------------------------EY 205 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH----------------------------------------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------------------------------------HH
Confidence 877766544 7999999999999999999764 34
Q ss_pred HHhHHHHHhchhhHHHHHHHHHhhhcc------hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Q 008818 454 WAGFAAVQKTHHEVAAAFETEENELSK------MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 516 (552)
Q Consensus 454 ~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (552)
|..++.++...|++++|+..|.+++.. .....|..++..+...|++++|...++++++..|++
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 555555555555665555555554441 122344455555555555555555555555555543
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=4.2e-22 Score=178.98 Aligned_cols=213 Identities=15% Similarity=0.086 Sum_probs=175.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 323 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 323 (552)
+.++..++.+|.+++..|++++|+..|++++.++| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 44568999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCChHHHHHHHHH
Q 008818 324 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDHRSSGKCLEK 396 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~ 396 (552)
.++. ..|++++|+..|+++++++|++. .++..+|.++...|++++|+..|++
T Consensus 84 ~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 84 AAYR---------------------DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH---------------------HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 9988 89999999999999999999988 6799999999999999999999999
Q ss_pred HHhhCCC--CcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHH
Q 008818 397 AAKLEPN--CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 474 (552)
Q Consensus 397 al~~~p~--~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 474 (552)
+++++|+ +..+++.++...+ ..|+. .+
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~----------------------------------------------~~~~~-----~~ 171 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFY----------------------------------------------NNGAD-----VL 171 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHH----------------------------------------------HHHHH-----HH
T ss_pred HHhcCCCcccHHHHHHHHHHHH----------------------------------------------HHHHH-----HH
Confidence 9999998 7666655555433 22221 00
Q ss_pred HhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 008818 475 ENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 529 (552)
Q Consensus 475 ~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 529 (552)
.+.............+......+.+++|+.+|+++++++|+++.++..++.+...
T Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 172 RKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 1100000000111122245567789999999999999999999999999887643
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=1.6e-22 Score=181.09 Aligned_cols=215 Identities=13% Similarity=0.045 Sum_probs=193.9
Q ss_pred hCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHH
Q 008818 152 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 231 (552)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (552)
.+|.++.+++.+|.++...|++++|+..|+++++..|+. ..++..++.++ ...|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~-----------~~~~~~~ 59 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------------ELAWLVRAEIY-----------QYLKVND 59 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHH-----------HHTTCHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------------hHHHHHHHHHH-----------HHcCChH
Confidence 468889999999999999999999999999999986643 12344455553 3456669
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKS-GRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
+|+..|++++..+|.+..++..+|.++... |++++|+..|++++. ..|.+..++..+|.++...|++++|+..|+++
T Consensus 60 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 60 KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999 66777899999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCh
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDH 387 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~ 387 (552)
++..|.+..++..++.++. ..|++++|+..++++++..| .+...+..++.++...|++
T Consensus 140 ~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 140 LAAQPQFPPAFKELARTKM---------------------LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHhCCCCchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 9999999999999999888 89999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHH
Q 008818 388 RSSGKCLEKAAKLEPNCMSTRYA 410 (552)
Q Consensus 388 ~~A~~~~~~al~~~p~~~~~~~~ 410 (552)
++|..+++.+...+|++......
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999998766543
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=2.2e-23 Score=205.33 Aligned_cols=269 Identities=14% Similarity=0.090 Sum_probs=221.2
Q ss_pred HHhHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcc
Q 008818 136 EEKVSSLKTGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 211 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 211 (552)
.+.++.|...++++++.+|++. .+++.+|.+|...|++++|+.+|++++++...
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------------- 118 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS---------------------- 118 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------------
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------
Confidence 4566777788888888999987 58999999999999999999999999986211
Q ss_pred cccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHH
Q 008818 212 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCI 285 (552)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~ 285 (552)
+...|....++..+|.+|...|++++|+.+|++++.+ .+....++
T Consensus 119 -----------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 169 (411)
T 4a1s_A 119 -----------------------------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRAL 169 (411)
T ss_dssp -----------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -----------------------------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 1123455778999999999999999999999999988 55567799
Q ss_pred HHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhhcccccccccccc
Q 008818 286 GNLGIAYFQSGD-----------------MEQSAKCFQDLILKDQ------NHPAALINYAALLLCKYGSVLAGAGANTG 342 (552)
Q Consensus 286 ~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (552)
..+|.+|...|+ +++|+.+|++++.+.+ ....++..+|.++.
T Consensus 170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--------------- 234 (411)
T 4a1s_A 170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY--------------- 234 (411)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------
Confidence 999999999999 9999999999987642 22335555665555
Q ss_pred cchhHHHhcCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 008818 343 EGACLDQASAVNVAKECLLAALKADPKAA------HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 343 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l 416 (552)
..|++++|+.+|++++++.+... .++..+|.+|...|++++|+.+|++++.+.+.......
T Consensus 235 ------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------- 301 (411)
T 4a1s_A 235 ------LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV------- 301 (411)
T ss_dssp ------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH-------
T ss_pred ------HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH-------
Confidence 99999999999999999876533 38999999999999999999999999988664322110
Q ss_pred HhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--------hhhhhh
Q 008818 417 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAG 488 (552)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~ 488 (552)
...++..+|.++...|++++|+..+.+++.... ..+++.
T Consensus 302 ---------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 348 (411)
T 4a1s_A 302 ---------------------------------EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS 348 (411)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 125688899999999999999999998765322 247889
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCc
Q 008818 489 ESAFLDQASAVNVAKECLLAALKADPKA 516 (552)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (552)
+|.++...|++++|+.+|++++++.+..
T Consensus 349 la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 349 LGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998753
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=3.4e-23 Score=214.29 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=162.3
Q ss_pred hCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHH
Q 008818 152 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 231 (552)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (552)
..|+++++|++||.+|..+|++++|+.+|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------------------------------------------- 38 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------------------------------------------- 38 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------------------------
Confidence 46889999999999999999998888888888775
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
+|+++.++.++|.+|..+|++++|+.+|+++++++|+++.+++++|.+|..+|++++|++.|++++++
T Consensus 39 ------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 39 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp ------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 008818 312 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 391 (552)
Q Consensus 312 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 391 (552)
+|++..++.++|.++. ..|++++|+..|+++++++|+++.++.++|.++..+|++++|+
T Consensus 107 ~P~~~~a~~~Lg~~~~---------------------~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 107 NPAFADAHSNLASIHK---------------------DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 008818 392 KCLEKAAKLEPN 403 (552)
Q Consensus 392 ~~~~~al~~~p~ 403 (552)
+.|++++++.|+
T Consensus 166 ~~~~kal~l~~~ 177 (723)
T 4gyw_A 166 ERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhChh
Confidence 999999987654
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=5.7e-23 Score=196.14 Aligned_cols=272 Identities=13% Similarity=0.082 Sum_probs=218.5
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhh
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKN----AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHA 208 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 208 (552)
....+.++.|...++++++.+|++ ..++..+|.++...|++++|+.+|++++++.+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------- 75 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------------------- 75 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-------------------
Confidence 556678888889999999999998 468899999999999999999999999986321
Q ss_pred hcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q 008818 209 QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------C 282 (552)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~ 282 (552)
....|....++..+|.++...|++++|+..|++++.+.+.. .
T Consensus 76 --------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 76 --------------------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp --------------------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------------ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 01123446788899999999999999999999999885543 4
Q ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhhcccccc
Q 008818 283 DCIGNLGIAYFQSGD--------------------MEQSAKCFQDLILKD------QNHPAALINYAALLLCKYGSVLAG 336 (552)
Q Consensus 283 ~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~ 336 (552)
.++..+|.++...|+ +++|+..+++++.+. +....++..+|.++.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~--------- 194 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY--------- 194 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---------
Confidence 489999999999999 999999999998763 222334555555555
Q ss_pred cccccccchhHHHhcCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 008818 337 AGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 410 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 410 (552)
..|++++|+..++++++..+.. ..++..+|.++...|++++|+.++++++.+.+.......
T Consensus 195 ------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 261 (338)
T 3ro2_A 195 ------------LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV- 261 (338)
T ss_dssp ------------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred ------------HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH-
Confidence 9999999999999999875542 348999999999999999999999999987654322110
Q ss_pred HHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchh--------
Q 008818 411 VAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-------- 482 (552)
Q Consensus 411 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-------- 482 (552)
...++..+|.++...|++++|+..+.+++...+
T Consensus 262 ---------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 262 ---------------------------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 124688899999999999999999998765322
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Q 008818 483 ECAGAGESAFLDQASAVNVAKECLLAALKADPKA 516 (552)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (552)
..++..+|.++...|++++|+.+|++++++.+..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 2467899999999999999999999999987653
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=8.5e-23 Score=189.19 Aligned_cols=231 Identities=15% Similarity=0.110 Sum_probs=196.7
Q ss_pred CCCccchhHHhHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHH
Q 008818 128 LGTSSSSREEKVSSLKTGLVHVARK----MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 203 (552)
Q Consensus 128 ~g~~~~~~~~~~~~a~~~l~~~l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 203 (552)
++.. ....+.++.+...+.++++. +|.++.+++.+|.++...|++++|+..|+++++..|.. .
T Consensus 11 ~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~ 77 (275)
T 1xnf_A 11 LAVP-LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------------P 77 (275)
T ss_dssp SCCC-CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------------H
T ss_pred eeec-cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------------H
Confidence 3444 56678999999999999987 35678899999999999999999999999999996643 2
Q ss_pred HHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 008818 204 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 283 (552)
Q Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 283 (552)
.++..+|.++. ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..
T Consensus 78 ~~~~~la~~~~-----------~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (275)
T 1xnf_A 78 EVFNYLGIYLT-----------QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146 (275)
T ss_dssp HHHHHHHHHHH-----------HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHH-----------HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH
Confidence 33455555543 4566699999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHH
Q 008818 284 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 363 (552)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 363 (552)
....++.+ ...|++++|+..+++++...|.+...+. ++.++. ..++.++|+..+.++
T Consensus 147 ~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 147 RSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYL---------------------GNISEQTLMERLKAD 203 (275)
T ss_dssp HHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHT---------------------TSSCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHH---------------------HhcCHHHHHHHHHHH
Confidence 77666654 6679999999999999999998876654 444444 677889999999999
Q ss_pred HhcCCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 364 LKADPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 364 l~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+...|. +..++..+|.++...|++++|+.+|++++.++|++.
T Consensus 204 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred hcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 988774 378999999999999999999999999999999764
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=1.1e-22 Score=210.39 Aligned_cols=145 Identities=21% Similarity=0.253 Sum_probs=108.9
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
..|++++++.+||.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 402 (552)
|.++. ..|++++|++.|+++++++|++..++.++|.+|..+|++++|+.+|+++++++|
T Consensus 84 g~~l~---------------------~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 84 GNTLK---------------------EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77776 677777777777777777777777777777777777777777777777777777
Q ss_pred CCcchH
Q 008818 403 NCMSTR 408 (552)
Q Consensus 403 ~~~~~~ 408 (552)
++..++
T Consensus 143 ~~~~a~ 148 (723)
T 4gyw_A 143 DFPDAY 148 (723)
T ss_dssp CCHHHH
T ss_pred CChHHH
Confidence 654333
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=3.8e-23 Score=205.04 Aligned_cols=346 Identities=13% Similarity=0.038 Sum_probs=248.4
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhh
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP---LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ 209 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 209 (552)
....++++.|.+.++++.+. .++.+++.||.+|...|++ ++|+.+|+++++.+| ..++.+
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~---------------~A~~~L 75 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSP---------------RAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------------------CHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCH---------------HHHHHH
Confidence 56778899999999988665 5788999999999999998 999999999987521 223344
Q ss_pred cccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhcCCCCHHHHH
Q 008818 210 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSS---ISVLSSLLAVDPNNCDCIG 286 (552)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A---~~~~~~al~~~p~~~~~~~ 286 (552)
|.++...+.. ..+++++|+..|+++++.. ++.+++.||.+|...+...++ .+.+.++.. +.++.+++
T Consensus 76 g~~~~~~~~~------~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~ 145 (452)
T 3e4b_A 76 GRLLAAKPGA------TEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGL 145 (452)
T ss_dssp HHHHHTC--C------CHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHH
T ss_pred HHHHHhCCCC------CCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHH
Confidence 4433222222 3468899999999999854 455899999999988765544 444444443 35678999
Q ss_pred HHHHHHHHcCCHHHHHH----HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhc---CHHHHHHH
Q 008818 287 NLGIAYFQSGDMEQSAK----CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKEC 359 (552)
Q Consensus 287 ~la~~~~~~g~~~~A~~----~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~ 359 (552)
.+|.+|...+.+++++. +++.+...+| .+++.+|.++. ..| ++++|+.+
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~---------------------~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQ---------------------KKQQPEQQAELLKQ 201 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHH---------------------HcCCcccHHHHHHH
Confidence 99999999995554444 4554444444 48889998888 677 99999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHH
Q 008818 360 LLAALKADPKAAHIWANLANAYYLT----GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 435 (552)
Q Consensus 360 ~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~ 435 (552)
|+++.+..+.....++++|.+|... +++++|+.+|+++. |+++.+++.++...+.... ......+...
T Consensus 202 ~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~-----~~d~~~A~~~ 273 (452)
T 3e4b_A 202 MEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE-----LGDVEQMMKY 273 (452)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-----GCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-----CCCHHHHHHH
Confidence 9999999999999999999999766 79999999999998 8999999999886442111 1223334444
Q ss_pred HHHHhhcCCCCCCCCHHHHHhHHHHHhchh-----hHHHHHHHHHhhhcchhhhhhhhHHHHHHh----hhhHHHHHHHH
Q 008818 436 MASILREGDPVQIEPPIAWAGFAAVQKTHH-----EVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECL 506 (552)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~la~~~~~----~~~~~~A~~~~ 506 (552)
+.+.... .++.+++.+|.+|. .| ++++|+..|+++. +....+++.+|.+|.. ..++++|+.+|
T Consensus 274 ~~~Aa~~------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 274 LDNGRAA------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHT------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHC------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 4444433 36789999999998 56 9999999999999 8888999999999887 34899999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHh
Q 008818 507 LAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 507 ~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~ 547 (552)
+++.+. +++.+.++||.+|.. ..++.+|..+|++|.+.-
T Consensus 346 ~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 346 LTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 999874 578899999999985 569999999999998653
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=4.6e-22 Score=178.76 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=167.1
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
.+.++.+++.+|.+++..|++++|+..|++++++.|
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------------------------------- 38 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------------------------------------- 38 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--------------------------------------------
Confidence 356778999999999999999999999988887632
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 312 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (552)
+.+..+++.+|.++...|++++|+.+|+++++.+|++..++..+|.+|..+|++++|+..|+++++++
T Consensus 39 ------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 39 ------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp ------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 13456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCh---
Q 008818 313 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDH--- 387 (552)
Q Consensus 313 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~--- 387 (552)
|++...+..++.++. .+|.++...|++++|+..|+++++++|+ ++.++..+|.+|...|+.
T Consensus 107 p~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 172 (228)
T 4i17_A 107 PGNATIEKLYAIYYL--------------KEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLR 172 (228)
T ss_dssp TTCHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH--------------HHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999966555555544 2455566999999999999999999999 999999999999999998
Q ss_pred ------------------------HHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 388 ------------------------RSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 388 ------------------------~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
++|+.+|+++++++|++..+...++.
T Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 173 KATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999877665543
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=9e-22 Score=185.34 Aligned_cols=225 Identities=13% Similarity=0.107 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHH-------cCCc-------hHHHHHHHHHHH-HHhhccccccchhHHHHHH
Q 008818 140 SSLKTGLVHVARKMPKNAHAHFLLGLMYQR-------LGQP-------LKAVSSYEKAEE-ILLRCEADIARPELLSLVQ 204 (552)
Q Consensus 140 ~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~ 204 (552)
..+...+++++..+|.++.+|+.+|.++.. .|++ ++|+..|++|++ +.|+. ..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~------------~~ 100 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN------------ML 100 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC------------HH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc------------HH
Confidence 677888999999999999999999999874 5887 999999999999 66543 12
Q ss_pred HhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 008818 205 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 283 (552)
Q Consensus 205 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 283 (552)
++..++.++. ..|++++|+..|+++++..|.++. +|..+|.++.+.|++++|+..|+++++.+|....
T Consensus 101 ~~~~~~~~~~-----------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 101 LYFAYADYEE-----------SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HHHHHHHHHH-----------HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred HHHHHHHHHH-----------hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 3445555433 345669999999999999999887 9999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHH
Q 008818 284 CIGNLGIAYFQ-SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 362 (552)
Q Consensus 284 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 362 (552)
++...+.+... .|++++|+..|+++++.+|+++.+|..++.++. ..|++++|+.+|++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------------~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS---------------------HLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHH
Confidence 88877776544 799999999999999999999999999998887 88999999999999
Q ss_pred HHhc---CCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 363 ALKA---DPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 363 al~~---~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
++.. .|+ ...+|..++..+...|++++|..+++++++..|++....
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~ 278 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc
Confidence 9995 553 788999999999999999999999999999999876443
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=5e-22 Score=193.60 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=178.7
Q ss_pred ccCchhHHHHHHHHHHHHhc------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGI 290 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~ 290 (552)
+...|++++|+..|+++++. .+..+.++..+|.+|...|++++|+.++++++++.+.. ..++..+|.
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34556779999999999987 33467899999999999999999999999999984432 468999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 291 AYFQSGDMEQSAKCFQDLILKDQNHP------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
+|..+|++++|+.+|++++.+.+... .++.++|.++. ..|++++|+.+|++++
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~---------------------~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN---------------------SQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHH
Confidence 99999999999999999998865433 34555665555 9999999999999999
Q ss_pred h-----cC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHH
Q 008818 365 K-----AD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 438 (552)
Q Consensus 365 ~-----~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~ 438 (552)
+ .+ |....++..+|.+|..+|++++|+.++++++.+.+........
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------------- 303 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL---------------------------- 303 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH----------------------------
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH----------------------------
Confidence 9 56 7889999999999999999999999999999875432111100
Q ss_pred HhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH
Q 008818 439 ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH 518 (552)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 518 (552)
..+..++.++...|++ ..+++|+..+++. ...|....
T Consensus 304 -------------~~~~~l~~~~~~~~~~-----------------------------~~~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 304 -------------SEFEFLKSLYLSGPDE-----------------------------EAIQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp -------------HHHHHHHHHHTSSCCH-----------------------------HHHHHHHHHHHHT-TCHHHHHH
T ss_pred -------------HHHHHHHHHHhCCCcH-----------------------------HHHHHHHHHHHHC-cCHHHHHH
Confidence 1123344444444431 0155666666655 33344556
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 519 IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 519 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
++..+|.+|...|++++|..+|++++++..+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888887643
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=191.91 Aligned_cols=264 Identities=17% Similarity=0.186 Sum_probs=198.0
Q ss_pred hCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHH
Q 008818 152 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 231 (552)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (552)
.+|..+.++..+|.++...|++++|+.+|++++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------------------------------ 59 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK------------------------------------------ 59 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------------------
Confidence 36788899999999999999999999999999986211
Q ss_pred HHHHHHHHHH-hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 008818 232 EILSKLKESM-QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 232 ~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
.. ...|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+
T Consensus 60 --------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 131 (311)
T 3nf1_A 60 --------TSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 131 (311)
T ss_dssp --------HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --------HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHH
Confidence 00 024556788999999999999999999999999987 3556788999999999999999999
Q ss_pred HHHHHHHhhC--------CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc--------
Q 008818 303 KCFQDLILKD--------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-------- 366 (552)
Q Consensus 303 ~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 366 (552)
.+|++++.+. |....++..+|.++. ..|++++|+.+|+++++.
T Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 132 PLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ---------------------NQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999874 444556677777766 999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCC
Q 008818 367 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 446 (552)
Q Consensus 367 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (552)
.|....++..+|.+|...|++++|+.+|++++...+...... .
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------------~ 233 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS-------------------------------------V 233 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------------------------------------C
Confidence 677888999999999999999999999999998654311000 0
Q ss_pred CCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 008818 447 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 526 (552)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 526 (552)
.+.....|...+.... ++..+...+.+.+|+..+++++...|....++..+|.+
T Consensus 234 ~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 234 DDENKPIWMHAEEREE--------------------------CKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp ----CCHHHHHHHHHH--------------------------C-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH--------------------------hcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 0000112222222211 22244456667778888899998999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHHhcc
Q 008818 527 YYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
|...|++++|+.+|++++++.++
T Consensus 288 ~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 288 YRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998765
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.2e-20 Score=173.35 Aligned_cols=219 Identities=13% Similarity=0.027 Sum_probs=174.3
Q ss_pred HhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 008818 241 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-- 315 (552)
Q Consensus 241 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 315 (552)
....|.++..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.+|...|++++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678889999999999999999999999999999999998 8999999999999999999999999999998865
Q ss_pred -HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH-----------------HHH
Q 008818 316 -PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW-----------------ANL 377 (552)
Q Consensus 316 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l 377 (552)
..+++.+|.++..... .++...|++++|+..|+++++.+|++..+. +.+
T Consensus 88 ~~~a~~~lg~~~~~~~~-------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSP-------------PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHHHHCC-------------CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc-------------cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888771000 000018999999999999999999976555 888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhH
Q 008818 378 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 457 (552)
Q Consensus 378 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (552)
|.+|...|++++|+..|++++...|++... +.++..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------------------------------------------~~a~~~l 191 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWA-------------------------------------------DDALVGA 191 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTH-------------------------------------------HHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchH-------------------------------------------HHHHHHH
Confidence 999999999999999999999999985421 2345555
Q ss_pred HHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCChh
Q 008818 458 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHR 534 (552)
Q Consensus 458 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~ 534 (552)
|.++...|+...+ ....|++++|+..|+++++..|+++ .+...++.++...++++
T Consensus 192 ~~~~~~~g~~~~~----------------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 192 MRAYIAYAEQSVR----------------------ARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHTSCG----------------------GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchh----------------------hcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 5555543322110 1245899999999999999999984 56677888888777776
Q ss_pred HHH
Q 008818 535 SSG 537 (552)
Q Consensus 535 ~A~ 537 (552)
++.
T Consensus 250 ~~~ 252 (261)
T 3qky_A 250 GDA 252 (261)
T ss_dssp TCT
T ss_pred hhh
Confidence 544
No 68
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=2.8e-21 Score=160.53 Aligned_cols=142 Identities=11% Similarity=0.189 Sum_probs=134.8
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
+...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.+|+.+|.+|...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC-LLAALKADPKAAHIWANLANAYY 382 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~ 382 (552)
.|+++++++|+++.++..+|.++. ..|++++|... ++++++++|+++.++..++.++.
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLC---------------------KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999999988 88999887765 58999999999999999999998
Q ss_pred HcCC
Q 008818 383 LTGD 386 (552)
Q Consensus 383 ~~~~ 386 (552)
..|+
T Consensus 146 ~~G~ 149 (150)
T 4ga2_A 146 CEGE 149 (150)
T ss_dssp TCCC
T ss_pred HhCc
Confidence 8885
No 69
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2.3e-21 Score=202.12 Aligned_cols=203 Identities=10% Similarity=-0.022 Sum_probs=169.2
Q ss_pred hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008818 242 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL--------AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 242 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 313 (552)
..+|+++.+++..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46788888887777 78899999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 008818 314 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 393 (552)
Q Consensus 314 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 393 (552)
++..+++.+|.++. ..|++++|+..|+++++++|++..++.++|.++..+|++++ +..
T Consensus 465 ~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 465 WRWRLVWYRAVAEL---------------------LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp CCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred chHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHH
Confidence 99999999999998 89999999999999999999999999999999999999999 999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHH
Q 008818 394 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 473 (552)
Q Consensus 394 ~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 473 (552)
|+++++++|++..+++++
T Consensus 523 ~~~al~~~P~~~~a~~~l-------------------------------------------------------------- 540 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGL-------------------------------------------------------------- 540 (681)
T ss_dssp HHHHHHHCTTCHHHHHHH--------------------------------------------------------------
T ss_pred HHHHHHhCCchHHHHHHH--------------------------------------------------------------
Confidence 999999999876444333
Q ss_pred HHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHh
Q 008818 474 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GKCLEKVLMVY 547 (552)
Q Consensus 474 ~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~l~ 547 (552)
|.++...|++++|+..|+++++++|++..+++++|.++...|+.+++ ...+++|++.+
T Consensus 541 ----------------g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 541 ----------------ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp ----------------HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred ----------------HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 33666777777777788888888888888888888877666654444 44555555444
No 70
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=8.6e-20 Score=168.09 Aligned_cols=229 Identities=10% Similarity=0.024 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---CCHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVLSSLLAVDPNNCDCIGNLGIAY----FQS---GDMEQS 301 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A 301 (552)
++|+..+.++|.++|++..+|+.++.++...| ++++++..+.+++..+|++..+|+..+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 67777888888888888888888888888888 888888888888888888888888888888 666 788888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHH--HHHHHHHHHHhcCCCcHHHHHHHHH
Q 008818 302 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--VAKECLLAALKADPKAAHIWANLAN 379 (552)
Q Consensus 302 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~ 379 (552)
+.++.++++.+|.+..+|...+.++. ..|.++ ++++++.++++.+|.+..+|..++.
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~---------------------~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVD---------------------TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 88888888888888888888888777 667777 8888888888888888888888888
Q ss_pred HHHHcCC------hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHH
Q 008818 380 AYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 453 (552)
Q Consensus 380 ~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (552)
++...+. ++++++++.+++..+|++..+|+.+..
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~---------------------------------------- 228 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG---------------------------------------- 228 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH----------------------------------------
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH----------------------------------------
Confidence 8888877 888888888888888888766654433
Q ss_pred HHhHHHHHhchhhHHHHHH-HHHhhh-----cchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHH-hCCCcHHHHHHHHHH
Q 008818 454 WAGFAAVQKTHHEVAAAFE-TEENEL-----SKMEECAGAGESAFLDQASAVNVAKECLLAALK-ADPKAAHIWANLANA 526 (552)
Q Consensus 454 ~~~~~~~~~~~~~~~~A~~-~~~~~l-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~ 526 (552)
++...|....++. ...+.+ .+....++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 229 ------ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 229 ------IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp ------HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred ------HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 2222222111111 112211 133446677777788888899999999999986 799999888877654
No 71
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=7.5e-21 Score=177.45 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=131.2
Q ss_pred CchhHHHHHHHHHHHHhcCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYF 293 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 293 (552)
..|++++|+..|.++++..+ ..+.++.++|.+|..+|++++|+.+|++++.+.+.. ..++.++|.+|.
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34555777777777777642 236789999999999999999999999999987643 468999999999
Q ss_pred Hc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc
Q 008818 294 QS-GDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 366 (552)
Q Consensus 294 ~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 366 (552)
.. |++++|+.+|++++++.|.. ..++..+|.++. ..|++++|+.+|++++++
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA---------------------LDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHT
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHH
Confidence 96 99999999999999998754 345666666666 999999999999999999
Q ss_pred CCCcHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 008818 367 DPKAAH-------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 367 ~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
.|++.. ++..+|.++..+|++++|+.+|++++.++|+....
T Consensus 188 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 887543 68899999999999999999999999999986543
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=2.3e-20 Score=171.38 Aligned_cols=200 Identities=13% Similarity=0.070 Sum_probs=159.4
Q ss_pred HhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhH
Q 008818 151 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 230 (552)
Q Consensus 151 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 230 (552)
..+|.++..++.+|..++..|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------------------------------- 48 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH---------------------------------------- 48 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS----------------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----------------------------------------
Confidence 3578899999999999999999988888888887764321
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH--------cCCHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQ--------SGDME 299 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~--------~g~~~ 299 (552)
|..+.+++.+|.++...|++++|+..|+++++..|++ +.+++.+|.++.. .|+++
T Consensus 49 --------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 114 (261)
T 3qky_A 49 --------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTR 114 (261)
T ss_dssp --------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHH
T ss_pred --------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHH
Confidence 1226788999999999999999999999999997754 6788999999999 99999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 008818 300 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWAN 376 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 376 (552)
+|+..|++++..+|++..+...+..+...... ....++.+|.++...|++++|+..|+++++..|+ ...+++.
T Consensus 115 ~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 115 KAIEAFQLFIDRYPNHELVDDATQKIRELRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 99999999999999887665333222111000 0111234566666999999999999999999998 6789999
Q ss_pred HHHHHHHc----------CChHHHHHHHHHHHhhCCCCcchH
Q 008818 377 LANAYYLT----------GDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 377 la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
+|.+|..+ |++++|+..|+++++.+|+++.+.
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 99999987 899999999999999999986544
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=6.1e-20 Score=178.37 Aligned_cols=243 Identities=16% Similarity=0.073 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 323 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 323 (552)
.++.+|..+...|++++|+.+|++++.+.+ ....+++.+|.+|...|++++|+.++++++.+.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 677899999999999999999999998732 24678999999999999999999999999988654322111122
Q ss_pred HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008818 324 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a 397 (552)
.++. .+|.++...|++++|+.+|++++++.+ ....++.++|.+|..+|++++|+.+|+++
T Consensus 183 ~~~~--------------~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 183 QSLF--------------VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222 234444599999999999999998643 13568999999999999999999999999
Q ss_pred HhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhh
Q 008818 398 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE 477 (552)
Q Consensus 398 l~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 477 (552)
+.+...... +..+.++..+|.++...|++++|+..+.++
T Consensus 249 l~~~~~~~~-----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 249 AKVSREKVP-----------------------------------------DLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHCG-----------------------------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhCC-----------------------------------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 985321100 112357889999999999999999999997
Q ss_pred hcchh-------hhhhhhHHHHHHhhhh---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 008818 478 LSKME-------ECAGAGESAFLDQASA---VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 478 l~~~~-------~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 547 (552)
+.... ...+..++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|..+|++++++.
T Consensus 288 l~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 65221 1234467777777777 88888888872 3334556788999999999999999999999999876
Q ss_pred c
Q 008818 548 C 548 (552)
Q Consensus 548 ~ 548 (552)
.
T Consensus 367 ~ 367 (378)
T 3q15_A 367 E 367 (378)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=4.1e-20 Score=163.03 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=150.4
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
+++.++..|..++..|++++|+..|+++++.+|++. .+++..+. ..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~~~~-----~~----------------- 48 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------EMYYWTNV-----DK----------------- 48 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH------------HHHHHHHS-----CT-----------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHhhh-----cc-----------------
Confidence 466788889999999999999999999998865431 11111110 00
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008818 236 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 315 (552)
Q Consensus 236 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 315 (552)
.....+.....+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+.+|+++++++|++
T Consensus 49 -------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 49 -------NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp -------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred -------hhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 0111234556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 008818 316 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 395 (552)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 395 (552)
+.+++.+|.+++.. ..++...+...|.+++...|. ..+++.+|.++...|++++|+.+|+
T Consensus 122 ~~a~~~lg~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 122 LAANIFLGNYYYLT-------------------AEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------hHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998732 234466778888888754433 4578889999999999999999999
Q ss_pred HHHhhCCCCc
Q 008818 396 KAAKLEPNCM 405 (552)
Q Consensus 396 ~al~~~p~~~ 405 (552)
++++++|+..
T Consensus 182 ~al~l~P~~~ 191 (208)
T 3urz_A 182 KVILRFPSTE 191 (208)
T ss_dssp HHTTTSCCHH
T ss_pred HHHHhCCCHH
Confidence 9999999753
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.86 E-value=1.9e-19 Score=174.63 Aligned_cols=281 Identities=14% Similarity=0.006 Sum_probs=214.6
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 236 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 236 (552)
..++..+|.++...|++++|+..+++++...|... +
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~--------------------------------------- 49 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----F--------------------------------------- 49 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----H---------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-----h---------------------------------------
Confidence 34667788888888888888888888887532110 0
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 237 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 237 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
.....++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++++|+..+++++.
T Consensus 50 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 50 --------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0113467889999999999999999999999875533 23478899999999999999999999998
Q ss_pred hCC--------CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-----cHHHHHHH
Q 008818 311 KDQ--------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANL 377 (552)
Q Consensus 311 ~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l 377 (552)
+.+ .....+..+|.++. ..|++++|+..+++++...+. ...++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 122 LINEQHLEQLPMHEFLVRIRAQLLW---------------------AWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCTTSTHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHhccccCcHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 752 22344556666666 899999999999999998765 35688899
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhH
Q 008818 378 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 457 (552)
Q Consensus 378 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (552)
|.++...|++++|..++++++.+.+.......... ......
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~---------------------------------------~~~~~~ 221 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS---------------------------------------NANKVR 221 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH---------------------------------------HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH---------------------------------------HHHHHH
Confidence 99999999999999999999987443211100000 112234
Q ss_pred HHHHhchhhHHHHHHHHHhhhcchhh------hhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHH
Q 008818 458 AAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPK------AAHIWANLAN 525 (552)
Q Consensus 458 ~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~ 525 (552)
+.++...|++++|...+...+..... ..+..+|.++...|++++|+..+++++...+. ...++..+|.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 45577889999999999887654322 23567888999999999999999999886442 2357888999
Q ss_pred HHHHcCChhHHHHHHHHHHHHhcc
Q 008818 526 AYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
++...|++++|...|++++++...
T Consensus 302 ~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988754
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.85 E-value=1.3e-19 Score=166.84 Aligned_cols=231 Identities=11% Similarity=0.054 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccc----
Q 008818 140 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP---- 213 (552)
Q Consensus 140 ~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---- 213 (552)
+.+.....+++..+|++..+|+.+|.++..+| ++++++.++.+++..+|++. .+++..+.++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------------~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------------QIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH------------HHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999 99999999999999987652 2233333333
Q ss_pred cccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--SSISVLSSLLAVDPNNCDCIGNLGIA 291 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~ 291 (552)
..++. .+++++++..+.++++.+|.+..+|..++.++...|.++ ++++++.++++.+|.+..+|..++.+
T Consensus 118 ~~l~~--------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 118 ELNNN--------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHTTT--------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred Hhccc--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 22211 145699999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCH-HHHHHHHHHHH
Q 008818 292 YFQSGD------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV-NVAKECLLAAL 364 (552)
Q Consensus 292 ~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al 364 (552)
....|. ++++++++++++..+|++..+|..++.++. ..|+. +....++.+++
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~---------------------~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE---------------------RFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH---------------------HTTCCGGGGHHHHHTTE
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH---------------------hcCCChHHHHHHHHHHH
Confidence 999988 999999999999999999999999999887 55554 44556777777
Q ss_pred hcC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCcchHHHH
Q 008818 365 KAD---PKAAHIWANLANAYYLTGDHRSSGKCLEKAAK-LEPNCMSTRYAV 411 (552)
Q Consensus 365 ~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l 411 (552)
.++ |.++.++..++.+|...|+.++|+++|+.+.+ .+|-....|...
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 766 88999999999999999999999999999997 799877766544
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.84 E-value=4.1e-21 Score=178.38 Aligned_cols=237 Identities=14% Similarity=0.157 Sum_probs=171.1
Q ss_pred CchhHHHHHHHHHHHHh--------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQ--------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLG 289 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la 289 (552)
..|++++|+..|+++++ ..|..+.++..+|.++...|++++|+.+|++++.+ .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555666666666665 23778899999999999999999999999999987 355678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHH
Q 008818 290 IAYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 361 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 361 (552)
.+|...|++++|+.+|++++.+ +|....++..+|.++. ..|++++|+.+|+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~ 151 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ---------------------NQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHH
Confidence 9999999999999999999987 3555667777777777 8999999999999
Q ss_pred HHHhc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHH
Q 008818 362 AALKA--------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 433 (552)
Q Consensus 362 ~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~ 433 (552)
++++. .|....++..+|.++..+|++++|+.+|++++.+.+.....
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------------------------- 205 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG-------------------------- 205 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS--------------------------
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--------------------------
Confidence 99998 77788999999999999999999999999999874321100
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC
Q 008818 434 NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 513 (552)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (552)
...+.....|..++..+...+... ....+..+...++......
T Consensus 206 -----------~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 206 -----------SVNGDNKPIWMHAEEREESKDKRR--------------------------DSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp -----------SCCSSCCCHHHHHHHHHHTTCCCC--------------------------C------------CCCCCC
T ss_pred -----------CcchhHHHHHHHHHHHHhcCCchh--------------------------HHHHHHHHHHHHHhcCCCC
Confidence 001111122333332222211110 1122344455555554555
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 514 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 514 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
|....++..+|.+|...|++++|+.+|++++++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666778888888888888888888888888765
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=3.2e-19 Score=173.24 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=181.1
Q ss_pred ccCchhHHHHHHHHHHHHhcC------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSD------TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-------NCDCIGNLGI 290 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~ 290 (552)
++..|++++|+..|+++++.. +..+.++..+|.+|...|++++|+.++++++.+.+. ...++..+|.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 345567799999999999763 345779999999999999999999999999987442 2557899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 291 AYFQSGDMEQSAKCFQDLILKDQN--H----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
+|...|++++|+.+|++++.+.+. + ..++.++|.++. ..|++++|+.+|++++
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~---------------------~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD---------------------RSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHH
Confidence 999999999999999999987432 1 234555555555 9999999999999999
Q ss_pred h-----cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHH
Q 008818 365 K-----ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 439 (552)
Q Consensus 365 ~-----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~ 439 (552)
. .+|....++..+|.++..+|++++|+.++++++.+.+......+.
T Consensus 250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------------------------- 300 (378)
T 3q15_A 250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK----------------------------- 300 (378)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH-----------------------------
T ss_pred HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH-----------------------------
Confidence 9 788889999999999999999999999999999987653322111
Q ss_pred hhcCCCCCCCCHHHHHhHHHHHhchhh---HHHHHHHHHhhhc-chhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC
Q 008818 440 LREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKAD 513 (552)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (552)
..+..++.++...++ +.+|+..+.+.-. +.....+..+|.+|...|++++|+.+|+++++..
T Consensus 301 ------------~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 301 ------------ELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ------------HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 123344555555555 7777777776322 3334566789999999999999999999998764
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=5.2e-20 Score=171.69 Aligned_cols=206 Identities=15% Similarity=0.076 Sum_probs=163.8
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhc
Q 008818 164 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 243 (552)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~ 243 (552)
|.+|...|++++|+.+|.+++++.+... +....+.++.++|.++..+ |++++|+..|++++++
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG------NEDEAGNTYVEAYKCFKSG-----------GNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHH
Confidence 7789999999999999999999865421 2233456667777775544 5559999999999998
Q ss_pred Ccch------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 244 DTRQ------AVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 244 ~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
.+.. +.++.++|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.+|++++.
T Consensus 107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7753 56899999999996 99999999999999997754 56789999999999999999999999999
Q ss_pred hCCCCHH-------HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH-----HHHHHH
Q 008818 311 KDQNHPA-------ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-----IWANLA 378 (552)
Q Consensus 311 ~~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la 378 (552)
+.|++.. .+..+|.++. ..|++++|+..|+++++++|+... .+..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQL---------------------AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHhcCCcccHHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 9987654 4556666665 999999999999999999998654 345566
Q ss_pred HHHH--HcCChHHHHHHHHHHHhhCCCCcch
Q 008818 379 NAYY--LTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 379 ~~~~--~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
..+. ..+++++|+..|++++.++|.....
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 6664 4678999999999999988865433
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=2.2e-20 Score=181.86 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=192.2
Q ss_pred cCCCccchhHHhHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHH
Q 008818 127 GLGTSSSSREEKVSSLKTGLVHVARK------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 200 (552)
Q Consensus 127 ~~g~~~~~~~~~~~~a~~~l~~~l~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 200 (552)
+.|.. ....+.++.|...+.++++. .+..+.+++.+|.+|...|++++|+.+|++++++.+.... ...
T Consensus 108 ~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~ 181 (383)
T 3ulq_A 108 FRGMY-ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-----YNI 181 (383)
T ss_dssp HHHHH-HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-----THH
T ss_pred HHHHH-HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-----chH
Confidence 36666 77788999999999999876 2335679999999999999999999999999999765321 133
Q ss_pred HHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 201 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSL 274 (552)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a 274 (552)
..+.++..+|.++..+ |++++|+..|+++++..+.. ..++.++|.+|..+|++++|+.+|+++
T Consensus 182 ~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDL-----------KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4456677777775544 55599999999999875533 358999999999999999999999999
Q ss_pred Hh-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C---HHHHHHHHHHHHHhhccccccccccccc
Q 008818 275 LA-----VD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--H---PAALINYAALLLCKYGSVLAGAGANTGE 343 (552)
Q Consensus 275 l~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (552)
+. .+ |....++..+|.+|..+|++++|+.++++++.+.+. + ...+..++.++.
T Consensus 251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~---------------- 314 (383)
T 3ulq_A 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL---------------- 314 (383)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----------------
Confidence 99 46 777899999999999999999999999999987432 2 222334444444
Q ss_pred chhHHHhcC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 344 GACLDQASA---VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 344 ~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
..|+ +.+|+..+++. ...|....++..+|.+|...|++++|+.+|++++.+...
T Consensus 315 -----~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 315 -----SGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -----SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred -----CCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7777 88888888877 344556778999999999999999999999999987553
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=2.3e-19 Score=158.23 Aligned_cols=193 Identities=10% Similarity=0.013 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
+..++..|..+...|++++|+..|++++..+|+++.+++.++. ..... ..+.....+|.++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~~~-------------~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKNSE-------------ISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTTSH-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cchhh-------------hhHHHHHHHHHHHH
Confidence 3445555666666666666666666666666655555544321 00000 00111223666665
Q ss_pred HhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 008818 328 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
..|++++|+..|+++++++|+++.++..+|.++...|++++|+.+|+++++++|++..+
T Consensus 66 ---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 66 ---------------------KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ---------------------HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999998755
Q ss_pred HHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchh--hHHHHHHHHHhhhcchhh-h
Q 008818 408 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH--EVAAAFETEENELSKMEE-C 484 (552)
Q Consensus 408 ~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~-~ 484 (552)
++.++. ++...| ....+...+...+.+.+. .
T Consensus 125 ~~~lg~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (208)
T 3urz_A 125 NIFLGN----------------------------------------------YYYLTAEQEKKKLETDYKKLSSPTKMQY 158 (208)
T ss_dssp HHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHC---CCCHHHH
T ss_pred HHHHHH----------------------------------------------HHHHHhHHHHHHHHHHHHHHhCCCchhH
Confidence 555544 443333 234455555555554433 4
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 008818 485 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 526 (552)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 526 (552)
+++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 67788999999999999999999999999974 444455554
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=179.71 Aligned_cols=221 Identities=15% Similarity=0.169 Sum_probs=166.3
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
+|....++..+|.+|...|++++|+.+|++++....... .++......++..++.++ ...|++++
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~l~~~~-----------~~~g~~~~ 129 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL----GKDHPAVAATLNNLAVLY-----------GKRGKYKE 129 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH-----------HTTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHH-----------HHcCcHHH
Confidence 567788999999999999999999999999998742210 011123345566666664 45566699
Q ss_pred HHHHHHHHHhcC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcC
Q 008818 233 ILSKLKESMQSD--------TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSG 296 (552)
Q Consensus 233 A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g 296 (552)
|+..|+++++.. |....++..+|.++...|++++|+.+|++++.+ .|....++..+|.+|...|
T Consensus 130 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 209 (311)
T 3nf1_A 130 AEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 999999999874 777889999999999999999999999999998 6667789999999999999
Q ss_pred CHHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC
Q 008818 297 DMEQSAKCFQDLILKDQ---------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 367 (552)
Q Consensus 297 ~~~~A~~~~~~al~~~p---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 367 (552)
++++|+.+|++++...+ .....+...+.... .+..+...+.+.+|+..+.+++...
T Consensus 210 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE---------------CKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH---------------C-------CCSCCCC---------C
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH---------------hcCchhhHHHHHHHHHHHhhcCCCC
Confidence 99999999999997532 33333444443333 3444557778888899999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 368 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 368 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998775
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=9.2e-20 Score=190.00 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=163.2
Q ss_pred cCchhHHHHHHHHHHHH--------hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 008818 225 LEPEELEEILSKLKESM--------QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 296 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 296 (552)
+..|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 57889999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH
Q 008818 297 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 376 (552)
Q Consensus 297 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 376 (552)
++++|+..|+++++++|++..++.++|.++. ..|++++ +..|+++++++|++..++++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~---------------------~~g~~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAE---------------------LAGNTDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH---------------------HHTCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HcCChHH-HHHHHHHHHhCCchHHHHHH
Confidence 9999999999999999999999999999988 8999999 99999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 008818 377 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 377 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l 416 (552)
+|.++..+|++++|+..|+++++++|++..++++++...+
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877654
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.1e-17 Score=176.16 Aligned_cols=365 Identities=13% Similarity=0.057 Sum_probs=253.8
Q ss_pred hhhHHHHhhhchhhHhhhhhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHH--------
Q 008818 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFL-------- 162 (552)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~-------- 162 (552)
+...+.+...|.....+ ..+++++ ..+... .....+..+ .+..+++.++....-+..
T Consensus 989 s~~vKaf~~aglp~Eai-eLLEKiv-l~~s~f-----------s~n~~Lqnl--Li~tAIkaD~~Rv~eyI~kLd~~d~~ 1053 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELI-ELLEKIV-LDNSVF-----------SEHRNLQNL--LILTAIKADRTRVMEYINRLDNYDAP 1053 (1630)
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHH-cCCCcc-----------cccHHHHHH--HHHHHHHhChhhHHHHHHHhhhccHH
Confidence 33455566666666665 7888887 333310 111122222 222333344444443333
Q ss_pred -HHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHH
Q 008818 163 -LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 241 (552)
Q Consensus 163 -lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 241 (552)
+|.++..+|.+++|...|+++-... .....+ +...+++++|+++++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~-------------~A~~VL-----------------ie~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNT-------------SAVQVL-----------------IEHIGNLDRAYEFAERC- 1102 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHH-------------HHHHHH-----------------HHHHhhHHHHHHHHHhc-
Confidence 5999999999999999999974220 001111 11346679999888865
Q ss_pred hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008818 242 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 321 (552)
Q Consensus 242 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 321 (552)
+.+.+|..+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .....
T Consensus 1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~ 1172 (1630)
T 1xi4_A 1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETE 1172 (1630)
T ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHH
Confidence 55889999999999999999999999886 789999999999999999999999999999887542 11112
Q ss_pred HHHHHHHhhccc-------ccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 008818 322 YAALLLCKYGSV-------LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 394 (552)
Q Consensus 322 l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 394 (552)
+|.+|....... ......+..+|..+...|+|++|+.+|.++ ..|..+|.+|.++|++++|++++
T Consensus 1173 LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 444443321100 011234456899999999999999999985 57899999999999999999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHH
Q 008818 395 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 474 (552)
Q Consensus 395 ~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 474 (552)
+++ .+..+|...+...+.... +..+... ... ...++..+..++..|...|.+++|+..+
T Consensus 1245 rKA-----~n~~aWkev~~acve~~E--------f~LA~~c-------gl~-Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1245 RKA-----NSTRTWKEVCFACVDGKE--------FRLAQMC-------GLH-IVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHh-----CCHHHHHHHHHHHhhhhH--------HHHHHHH-------HHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998 444666655444332111 1111000 000 1234566778899999999999999999
Q ss_pred Hhhhcchhh--hhhhhHHHHHH--hhhhHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCChhHHHHHH
Q 008818 475 ENELSKMEE--CAGAGESAFLD--QASAVNVAKECLLAALKADP-----KAAHIWANLANAYYLTGDHRSSGKCL 540 (552)
Q Consensus 475 ~~~l~~~~~--~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~ 540 (552)
+.++.-.+. ..+..+|.++. +-++..++++.|...+.+.| ++...|..+..+|.+-|+++.|+...
T Consensus 1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 987764433 44555666665 56789999999999998877 78899999999999999999999433
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=6.9e-19 Score=157.37 Aligned_cols=206 Identities=13% Similarity=0.088 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 320 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 320 (552)
.+..++.+|..++..|++++|+..|++++...|++ ..+++.+|.+|...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35688999999999999999999999999998876 478999999999999999999999999999999875 677
Q ss_pred HHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008818 321 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 400 (552)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 400 (552)
.+|.++. ..+.. ....+..++.++...|++++|+..|+++++.
T Consensus 83 ~~g~~~~---------------------~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 83 MRGLTNM---------------------ALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHH---------------------HHHC------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH---------------------hhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 7887776 33321 1223456777778889999999999999999
Q ss_pred CCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc
Q 008818 401 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 480 (552)
Q Consensus 401 ~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 480 (552)
.|++..+...... ++.+...
T Consensus 126 ~P~~~~a~~a~~~-------------------------------------------l~~~~~~----------------- 145 (225)
T 2yhc_A 126 YPNSQYTTDATKR-------------------------------------------LVFLKDR----------------- 145 (225)
T ss_dssp CTTCTTHHHHHHH-------------------------------------------HHHHHHH-----------------
T ss_pred CcCChhHHHHHHH-------------------------------------------HHHHHHH-----------------
Confidence 9998765532211 0101000
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 481 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
.....+.+|.++...|++++|+..|+++++..|+++ .+++.+|.+|..+|++++|+..++++....|.+
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011224567789999999999999999999999976 789999999999999999999999888776654
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=2.1e-20 Score=155.26 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=128.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 332 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 332 (552)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~----- 76 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE----- 76 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH-HHHHHhhCCCCcchHHHH
Q 008818 333 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC-LEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l 411 (552)
..|++++|+..|+++++++|+++.++..+|.+|...|++++|... ++++++++|+++.++...
T Consensus 77 ----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 77 ----------------LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred ----------------HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 999999999999999999999999999999999999999887776 599999999998877655
Q ss_pred HH
Q 008818 412 AV 413 (552)
Q Consensus 412 a~ 413 (552)
+.
T Consensus 141 ~~ 142 (150)
T 4ga2_A 141 EQ 142 (150)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=1.2e-18 Score=150.57 Aligned_cols=137 Identities=19% Similarity=0.285 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
....+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35567777777777788888888888877777777777777888887888888888888888777777777777777776
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
. ..|++++|+..++++++..|.+..++..+|.++...|++++|+.+|++++...|++
T Consensus 87 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 87 V---------------------QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp H---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred H---------------------HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 6 77777888888888777777777777777888888888888888887777777654
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=4.1e-19 Score=153.48 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=155.1
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
+...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.++...|++++|+.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 97 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP 97 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 34557779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 383 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 383 (552)
.|++++...|.+...+..+|.++. ..|++++|+..++++++..|.+..++..+|.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 98 LLIKVAEANPINFNVRFRLGVALD---------------------NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 999999999999999999998888 89999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCcch
Q 008818 384 TGDHRSSGKCLEKAAKLEPNCMST 407 (552)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~ 407 (552)
.|++++|+.+++++++..|++...
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 157 MGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred cCCHHHHHHHHHHHHHcCCCchhh
Confidence 999999999999999999887643
No 89
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.82 E-value=3.2e-19 Score=142.95 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=110.2
Q ss_pred HHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 239 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 239 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
++..++|+.+..+..+|..+++.|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008818 319 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 381 (552)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 381 (552)
++.+|.++. ..|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~---------------------~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLV---------------------AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999998888 889999999999999999999999998888764
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=1.9e-17 Score=160.48 Aligned_cols=305 Identities=12% Similarity=0.062 Sum_probs=223.6
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhh
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAH-----AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 207 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 207 (552)
....+.++.+...+.+++...|.... ++..+|.++...|++++|+..+++++.+.+... +.......+.
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~ 97 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------VWHYALWSLI 97 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC------cHHHHHHHHH
Confidence 34455677777778888777775532 688999999999999999999999999876532 2223344455
Q ss_pred hhcccccccCCCccccccCchhHHHHHHHHHHHHhcC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008818 208 AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 279 (552)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 279 (552)
.++.++ ...|++++|+..+++++... |....++..+|.++...|++++|+.++++++.+.+
T Consensus 98 ~la~~~-----------~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 98 QQSEIL-----------FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 666664 44566699999999999865 44567888999999999999999999999999876
Q ss_pred C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcC
Q 008818 280 N-----NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 352 (552)
Q Consensus 280 ~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (552)
. ...++..+|.++...|++++|+..+++++.+.+. ....+....... .+.++...|+
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~g~ 230 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV----------------RVIYWQMTGD 230 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH----------------HHHHHHHTTC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH----------------HHHHHHHCCC
Confidence 5 2467889999999999999999999999987432 222222111000 1222348999
Q ss_pred HHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHH
Q 008818 353 VNVAKECLLAALKADPKA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 428 (552)
Q Consensus 353 ~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~ 428 (552)
+++|...+.+++...+.. ...+..+|.++...|++++|...+++++...+......
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~-------------------- 290 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS-------------------- 290 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------------
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh--------------------
Confidence 999999999999877642 34678899999999999999999999987654322110
Q ss_pred HhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHH
Q 008818 429 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLA 508 (552)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (552)
....++..++.++...|++++|...+.+++......- ....+...| +.....+++
T Consensus 291 --------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g---~~~~~~~~g--~~~~~ll~~ 345 (373)
T 1hz4_A 291 --------------------DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG---FISHFVIEG--EAMAQQLRQ 345 (373)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC---CCHHHHTTH--HHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc---HHHHHHHcc--HHHHHHHHH
Confidence 0013567788888899999999999888766443321 112344455 567777888
Q ss_pred HHHhCCC
Q 008818 509 ALKADPK 515 (552)
Q Consensus 509 al~~~p~ 515 (552)
.+...|.
T Consensus 346 ~~~~~~~ 352 (373)
T 1hz4_A 346 LIQLNTL 352 (373)
T ss_dssp HHHTTCS
T ss_pred HHhCCCC
Confidence 8888775
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=1.9e-18 Score=154.48 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=142.7
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 235 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 235 (552)
.+..++.+|..++..|++++|+..|+++++..|.+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--------------------------------------------- 37 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG--------------------------------------------- 37 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---------------------------------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------------------
Confidence 45678888888888888888888888888765432
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH------------------
Q 008818 236 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYFQ------------------ 294 (552)
Q Consensus 236 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~------------------ 294 (552)
|....+++.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..
T Consensus 38 ---------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 108 (225)
T 2yhc_A 38 ---------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRD 108 (225)
T ss_dssp ---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------C
T ss_pred ---------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence 112356666677777777777777777777777666543 56666666654
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH---
Q 008818 295 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA--- 371 (552)
Q Consensus 295 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--- 371 (552)
.|++++|+..|+++++..|++..++..+..+...... .......+|.++...|++.+|+..|+++++..|+++
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 184 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATR 184 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccH
Confidence 6789999999999999999887655333222111000 011123467778899999999999999999999875
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 406 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 406 (552)
.++..+|.+|..+|++++|+..++++....|++..
T Consensus 185 ~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 185 DALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 68999999999999999999999999999998754
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=3.5e-19 Score=165.30 Aligned_cols=235 Identities=14% Similarity=0.143 Sum_probs=174.3
Q ss_pred HhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccc
Q 008818 137 EKVSSLKTGLVHVARKM-PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 215 (552)
Q Consensus 137 ~~~~~a~~~l~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (552)
..++.+...+.++...+ |..+.++..+|.+|...|++++|+.+|++++++..... .++......++..+|.++
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~l~~~~-- 95 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL----GKDHPAVAATLNNLAVLY-- 95 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc----CCcchHHHHHHHHHHHHH--
Confidence 34444455554444333 66788999999999999999999999999998742110 011223455666777764
Q ss_pred cCCCccccccCchhHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CC
Q 008818 216 SGDNSLDKELEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DP 279 (552)
Q Consensus 216 ~g~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p 279 (552)
...|++++|+..|++++.. +|....++..+|.++...|++++|+.+|++++.+ .|
T Consensus 96 ---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 96 ---------GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp ---------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred ---------HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4556669999999999987 5888899999999999999999999999999998 67
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHh
Q 008818 280 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK---------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA 350 (552)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (552)
....++..+|.++...|++++|+.+|++++.+ .+.....+..++...... ..+...
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 231 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK---------------DKRRDS 231 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT---------------CCCCC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC---------------CchhHH
Confidence 77889999999999999999999999999986 444555666666555421 111133
Q ss_pred cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008818 351 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 401 (552)
..+..+...+.......|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 232 APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -----------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 445666666666666667788999999999999999999999999999763
No 93
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=1.4e-17 Score=175.45 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 329 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 329 (552)
.+..+|..+...|+|++|+.+|.++ ..|..+|.+|.++|++++|++.++++ .+..+|...+.++.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acv-- 1261 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV-- 1261 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHh--
Confidence 4445666666666666666666664 35666666666666666666666666 34456666666655
Q ss_pred hcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 008818 330 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 409 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (552)
..|+|..|..+... +..+ ++.+..++..|...|.|++|+.++++++.+++.+...+.
T Consensus 1262 -------------------e~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1262 -------------------DGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred -------------------hhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 66667777766653 3333 445558888899999999999999999999988877776
Q ss_pred HHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCC-----CCHHHHHhHHHHHhchhhHHHHHHHHHh
Q 008818 410 AVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI-----EPPIAWAGFAAVQKTHHEVAAAFETEEN 476 (552)
Q Consensus 410 ~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 476 (552)
.++.....-. .+.+.... +.+.....+++ .....|..+..+|.+-|+++.|+..+..
T Consensus 1319 ELaiLyaKy~------peklmEhl----k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1319 ELAILYSKFK------PQKMREHL----ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHhCC------HHHHHHHH----HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 5555433210 00111111 11111222222 4456777778888888888877755444
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=3.8e-17 Score=151.05 Aligned_cols=241 Identities=11% Similarity=0.040 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--H
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD--M 298 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~ 298 (552)
++|+..+.+++..+|++..+|+.++.++...+. +++++.++..++..+|.+..+|...+.++...|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999988776 7899999999999999999999999999999994 9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcC-HHHHHHHHHHHHhcCCCcHHHHHHH
Q 008818 299 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKADPKAAHIWANL 377 (552)
Q Consensus 299 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 377 (552)
++++.++.++++.+|.+..+|...+.++. ..|. ++++++++.++++.+|.+..+|..+
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~---------------------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999887 6777 6999999999999999999999999
Q ss_pred HHHHHHc--------------CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcC
Q 008818 378 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG 443 (552)
Q Consensus 378 a~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (552)
+.++... +.++++++++.+++..+|++..+|+.+..........
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~---------------------- 243 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR---------------------- 243 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG----------------------
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc----------------------
Confidence 9999887 5689999999999999999998886443221110000
Q ss_pred CCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHH-----hhhhHHHHHHHHHHHHHhCCCcHH
Q 008818 444 DPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLD-----QASAVNVAKECLLAALKADPKAAH 518 (552)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~al~~~p~~~~ 518 (552)
..+. ....+.+++++..+.+.+...+...|..++.++. ..+..++...++.+.++++|....
T Consensus 244 -----------~~~~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 244 -----------CELS--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp -----------GGCC--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred -----------cccc--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 0000 1123455666666666555444445554444332 245567778888888888887776
Q ss_pred HHHHHHHHH
Q 008818 519 IWANLANAY 527 (552)
Q Consensus 519 ~~~~lg~~~ 527 (552)
-|..++.-+
T Consensus 311 ~y~d~~~~~ 319 (331)
T 3dss_A 311 YLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665443
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=2.2e-18 Score=138.11 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=112.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcC
Q 008818 273 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 352 (552)
Q Consensus 273 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (552)
++..++|+.+..+.++|.+|+..|++++|+..|+++++++|.++.++..+|.++. ..|+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------------~~~~ 62 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT---------------------KLME 62 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH---------------------hhcc
Confidence 4556899999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 353 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
+++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 63 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988876654
No 96
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4.6e-19 Score=168.00 Aligned_cols=273 Identities=13% Similarity=0.100 Sum_probs=128.3
Q ss_pred CccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHH
Q 008818 121 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 200 (552)
Q Consensus 121 ~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 200 (552)
....|..+|.. ....+.++.|..+|.+ ..++..+...+..+...|++++|+.+++.+++..++
T Consensus 31 ~~~vWs~La~A-~l~~g~~~eAIdsfik-----a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~----------- 93 (449)
T 1b89_A 31 EPAVWSQLAKA-QLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE----------- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHH-HHHcCCHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-----------
Confidence 34699999999 9999999999999965 356779999999999999999999999988875221
Q ss_pred HHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 008818 201 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 280 (552)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 280 (552)
..+...++.+|. +.|++.++..+++. |+ ..+|..+|..+...|.|++|+.+|.++
T Consensus 94 --~~i~~~Li~~Y~-----------Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 94 --SYVETELIFALA-----------KTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT------
T ss_pred --chhHHHHHHHHH-----------HhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 122234444443 44556888777742 43 459999999999999999999999987
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 360 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 360 (552)
..|..+|.++.++|++++|++.++++ +++..|...+.++. ..|+++.|..+.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv---------------------~~~ef~lA~~~~ 200 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV---------------------DGKEFRLAQMCG 200 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH---------------------HTTCHHHHHHTT
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH---------------------HcCcHHHHHHHH
Confidence 46899999999999999999999999 47888988888888 899999998877
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHh
Q 008818 361 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 440 (552)
Q Consensus 361 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 440 (552)
.. +..+|+. ...+..+|.+.|++++|+.++++++.+++.+...+..++.....-. .+.+. +..+.+
T Consensus 201 l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~------p~k~~----ehl~~~ 266 (449)
T 1b89_A 201 LH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK------PQKMR----EHLELF 266 (449)
T ss_dssp TT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC------HHHHH----HHHHHH
T ss_pred HH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC------HHHHH----HHHHHH
Confidence 75 3355554 4468899999999999999999999999988877777665332110 00000 001111
Q ss_pred hcCCCCCC-----CCHHHHHhHHHHHhchhhHHHHHHHHHhh
Q 008818 441 REGDPVQI-----EPPIAWAGFAAVQKTHHEVAAAFETEENE 477 (552)
Q Consensus 441 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 477 (552)
.....+++ ..+..|..+..+|...++++.|+..+...
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 12222222 33456677777777777777666665543
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.78 E-value=4.1e-18 Score=174.80 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=141.6
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--
Q 008818 307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 384 (552)
Q Consensus 307 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-- 384 (552)
++++++|++..++..+|.++. ..|++++|+..|+++++.+|++..++..+|.++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALE---------------------DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999988 899999999999999999999999999999999999
Q ss_pred -CChHHHHHHHHHHHhhCCCCcchHHHHH
Q 008818 385 -GDHRSSGKCLEKAAKLEPNCMSTRYAVA 412 (552)
Q Consensus 385 -~~~~~A~~~~~~al~~~p~~~~~~~~la 412 (552)
|++++|+..|+++++.+|++...+..++
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999888776654
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=4.2e-17 Score=150.80 Aligned_cols=241 Identities=11% Similarity=0.066 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----------chHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhh
Q 008818 140 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ----------PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ 209 (552)
Q Consensus 140 ~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 209 (552)
+.+...+..++..+|++..+|+..+.++..+|. +++++.++..++..+|.+ ..+|...
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------------y~aW~hR 114 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------YGTWHHR 114 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------------HHHHHHH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------------HHHHHHH
Confidence 456788888889999999999999999998876 689999999999997764 2445555
Q ss_pred cccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 008818 210 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-LQSSISVLSSLLAVDPNNCDCIGNL 288 (552)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 288 (552)
+.++..++.. .+++++..+.++++.+|.+..+|..++.+....|. ++++++++.++++.+|.+..+|..+
T Consensus 115 ~wlL~~l~~~---------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 115 CWLLSRLPEP---------NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHCSSC---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHhccCcc---------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 5555555431 36999999999999999999999999999999999 6999999999999999999999999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHH
Q 008818 289 GIAYFQS--------------GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 354 (552)
Q Consensus 289 a~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (552)
+.++... +.++++++++.+++..+|++..+|+.+..++....+. ...+ ....+.++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~--------~~~~--~~~~~~l~ 255 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR--------CELS--VEKSTVLQ 255 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG--------GGCC--HHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc--------cccc--hHHHHHHH
Confidence 9999887 5689999999999999999999998776666532110 0001 22456799
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 355 VAKECLLAALKADPKAAHIWANLANAYY---LTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 355 ~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
++++.++++++..|++...+..++.+.. ..|..++...++.+.+++||....-+.-+
T Consensus 256 ~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 256 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 9999999999999999666655554433 25778899999999999999876555444
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.78 E-value=2.9e-18 Score=146.89 Aligned_cols=139 Identities=17% Similarity=0.105 Sum_probs=104.3
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 334456778888888888888888888888888888888888888888888888888888888888888 7665544443
Q ss_pred HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 325 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
+... ..+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.
T Consensus 82 ~~~~--------------------~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 82 LELH--------------------QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHH--------------------HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHH--------------------hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 3321 22223346777888888888888888888888888888888888888887777753
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.78 E-value=2.8e-18 Score=146.95 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF-QSGDMEQSAKCFQ 306 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~ 306 (552)
|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..+...+|+..|+
T Consensus 20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 98 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLE 98 (176)
T ss_dssp TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHH
Confidence 4445555555555666778889999999999999999999999999999999 8877776665533 3334456899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHc
Q 008818 307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYYLT 384 (552)
Q Consensus 307 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~ 384 (552)
++++.+|+++.+++.+|.++. ..|++++|+..|+++++.+|+. ..++..+|.++..+
T Consensus 99 ~al~~~P~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 99 QELAANPDNFELACELAVQYN---------------------QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 999999999999999999988 8999999999999999999875 66999999999999
Q ss_pred CChHHHHHHHHHHHh
Q 008818 385 GDHRSSGKCLEKAAK 399 (552)
Q Consensus 385 ~~~~~A~~~~~~al~ 399 (552)
|++++|+..|++++.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=3.5e-18 Score=140.84 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 232 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 232 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.+|..+|++++|+.+|++++++
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 33344667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH
Q 008818 312 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 371 (552)
Q Consensus 312 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (552)
+|+++.+++++|.++. ..|++++|+..|++++++.|+..
T Consensus 100 ~P~~~~~~~~lg~~~~---------------------~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQL---------------------RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSCCHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888887777 77888888888888888877754
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=8.1e-19 Score=144.63 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccch
Q 008818 266 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 345 (552)
Q Consensus 266 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (552)
.+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++.
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~------------------ 81 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ------------------ 81 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------------
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------------
Confidence 34456788899999999999999999999999999999999999999999999999999998
Q ss_pred hHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 346 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
..|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|+..
T Consensus 82 ---~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 82 ---IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ---HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ---HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999865
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=2.1e-17 Score=153.37 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=153.2
Q ss_pred CCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHH
Q 008818 153 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 232 (552)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (552)
-|.+...++.+|..+...|++++|+..|+++++.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------------------------------------- 146 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL---------------------------------------------- 146 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------------------------------------------
Confidence 4888899999999999998888888888877765
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 312 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (552)
+|+++.+++.+|.++...|++++|+..|++++..+|+....+...+..+...++.++|+..|++++..+
T Consensus 147 -----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~ 215 (287)
T 3qou_A 147 -----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN 215 (287)
T ss_dssp -----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred -----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC
Confidence 566788999999999999999999999999999999877777888888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCChHHH
Q 008818 313 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYYLTGDHRSS 390 (552)
Q Consensus 313 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A 390 (552)
|++..+++.+|.++. ..|++++|+..|.++++.+|++ ..++..++.++...|+.++|
T Consensus 216 P~~~~~~~~la~~l~---------------------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 216 PEDAALATQLALQLH---------------------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp TTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred CccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 999999999999988 8999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHh
Q 008818 391 GKCLEKAAK 399 (552)
Q Consensus 391 ~~~~~~al~ 399 (552)
+..|++++.
T Consensus 275 ~~~~r~al~ 283 (287)
T 3qou_A 275 ASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=9.5e-18 Score=157.58 Aligned_cols=206 Identities=12% Similarity=0.134 Sum_probs=163.6
Q ss_pred hHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccc
Q 008818 135 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR-LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 213 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (552)
..+.+..+...++++.+..+.. ++. .+++++|+.+|.++...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~~~--------------------------- 45 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAAVA--------------------------- 45 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHHHH---------------------------
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHHHH---------------------------
Confidence 3567778888888877766642 112 47888888888887654
Q ss_pred cccCCCccccccCchhHHHHHHHHHHHHhcCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----
Q 008818 214 ESSGDNSLDKELEPEELEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--N---- 281 (552)
Q Consensus 214 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~---- 281 (552)
+...|++++|+..|.++++..+. ...++..+|.+|..+|++++|+.+|++++.+.+. +
T Consensus 46 ----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 46 ----------FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp ----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred ----------HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 23456778888888888877543 2568889999999999999999999999988432 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHH
Q 008818 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 355 (552)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (552)
..++.++|.+|.. |++++|+.+|++++.+.+.. ..++.++|.++. ..|++++
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~ 173 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV---------------------RQQKFDE 173 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH---------------------HcCCHHH
Confidence 4678999999999 99999999999999987643 345556666655 9999999
Q ss_pred HHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 008818 356 AKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 410 (552)
Q Consensus 356 A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 410 (552)
|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|++++ ++|+.......
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 999999999986543 3578899999999999999999999999 99987765443
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=3.9e-17 Score=151.61 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=112.9
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 323 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 323 (552)
.|.+...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 37888888888888888899999999999988888888888888888888888888888888888888886554444444
Q ss_pred HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 324 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
..+. ..++.++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++.+|+
T Consensus 193 ~~l~---------------------~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 193 IELL---------------------XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHH---------------------HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHH---------------------hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 4444 6667777888888888888888888888888888888888888888888877776
Q ss_pred C
Q 008818 404 C 404 (552)
Q Consensus 404 ~ 404 (552)
+
T Consensus 252 ~ 252 (287)
T 3qou_A 252 A 252 (287)
T ss_dssp G
T ss_pred c
Confidence 4
No 106
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=1.6e-16 Score=147.50 Aligned_cols=162 Identities=11% Similarity=0.061 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-G-DMEQSAKCFQD 307 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~ 307 (552)
++|+..+.+++..+|++..+|+.++.++...| .+++++..+.+++..+|++..+|...+.++... + ++++++.++.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 67888888888889999999999999999999 599999999999999999999999999999998 8 89999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHH--------HHHHHHHHHHhcCCCcHHHHHHHHH
Q 008818 308 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--------VAKECLLAALKADPKAAHIWANLAN 379 (552)
Q Consensus 308 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~la~ 379 (552)
+++.+|.+..+|...+.++. ..|.++ ++++++.++++.+|.+..+|..++.
T Consensus 151 ~L~~dpkNy~AW~~R~wvl~---------------------~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 151 SLLPDPKNYHTWAYLHWLYS---------------------HFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HTSSCTTCHHHHHHHHHHHH---------------------HHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHH---------------------HhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999998887 444455 9999999999999999999999999
Q ss_pred HHHHcCC-------hHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 380 AYYLTGD-------HRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 380 ~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
++...++ ++++++++++++.++|++..+|+.+..
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG 250 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999987 799999999999999999999876543
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=1.5e-17 Score=156.20 Aligned_cols=168 Identities=11% Similarity=0.083 Sum_probs=135.4
Q ss_pred HcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccC-chhHHHHHHHHHHHHhcCcch
Q 008818 169 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE-PEELEEILSKLKESMQSDTRQ 247 (552)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~ 247 (552)
..|++.+|..+++++.+..+.. ++. .+++++|+..|.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------------------------------~~~~~~~~~~A~~~~~~a------- 42 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------------------------------FMKWKPDYDSAASEYAKA------- 42 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------------------------------SSSCSCCHHHHHHHHHHH-------
T ss_pred ccchHHHHHHHHHHHHHHcccc---------------------------------ccCCCCCHHHHHHHHHHH-------
Confidence 3578889999999998763210 011 36678898888775
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH------ 315 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 315 (552)
|.+|...|++++|+.+|.+++.+.+.. ..++.++|.+|..+|++++|+.+|++++.+.+..
T Consensus 43 -------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 43 -------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred -------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 678899999999999999999986532 5688999999999999999999999999885432
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHH
Q 008818 316 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRS 389 (552)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~ 389 (552)
..++.++|.++. . |++++|+.+|++++.+.+.. ..++.++|.+|..+|++++
T Consensus 116 a~~~~~lg~~~~---------------------~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 173 (307)
T 2ifu_A 116 AMALDRAGKLME---------------------P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173 (307)
T ss_dssp HHHHHHHHHHHT---------------------T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHH---------------------c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 234555555554 7 99999999999999987653 6789999999999999999
Q ss_pred HHHHHHHHHhhCCCCc
Q 008818 390 SGKCLEKAAKLEPNCM 405 (552)
Q Consensus 390 A~~~~~~al~~~p~~~ 405 (552)
|+.+|++++.+.|++.
T Consensus 174 A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 174 AAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999876543
No 108
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.5e-19 Score=168.84 Aligned_cols=282 Identities=13% Similarity=0.112 Sum_probs=131.5
Q ss_pred hHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhccccc
Q 008818 135 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 214 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (552)
..+.++.|.+.++++ +++.+|..+|.++...|++++|++.|.++-.. ..+...+..
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~-----------------~~y~~V~~~-- 70 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP-----------------SSYMEVVQA-- 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH-----------------HHHHHHHHH--
Confidence 345577777777764 34569999999999999999999999875211 011122222
Q ss_pred ccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008818 215 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 294 (552)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 294 (552)
+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.+.++. |+ ..+|..+|..+..
T Consensus 71 ---------ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~ 134 (449)
T 1b89_A 71 ---------ANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYD 134 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTC-----C---------------
T ss_pred ---------HHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHH
Confidence 34567779999999998885444 77888999999999999998887753 43 4599999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 295 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 295 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
.|+|++|+.+|.++ ..|..++.++. ++|++++|++.++++ .++.+|
T Consensus 135 ~g~yeeA~~~Y~~a--------~n~~~LA~~L~---------------------~Lg~yq~AVea~~KA-----~~~~~W 180 (449)
T 1b89_A 135 EKMYDAAKLLYNNV--------SNFGRLASTLV---------------------HLGEYQAAVDGARKA-----NSTRTW 180 (449)
T ss_dssp --CTTTHHHHHHHT--------TCHHHHHHHHH---------------------TTTCHHHHHHHHHHH-----TCHHHH
T ss_pred cCCHHHHHHHHHHh--------hhHHHHHHHHH---------------------HhccHHHHHHHHHHc-----CCchhH
Confidence 99999999999977 35677777777 999999999999999 468999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHH
Q 008818 375 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAW 454 (552)
Q Consensus 375 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (552)
...+.++...|+++.|..+... +..+|++ .
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-------------------------------------------------l 210 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLH-IVVHADE-------------------------------------------------L 210 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-------------------------------------------------H
T ss_pred HHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-------------------------------------------------H
Confidence 9999999999999999666554 2233322 2
Q ss_pred HhHHHHHhchhhHHHHHHHHHhhhcch--hhhhhhhHHHHHH--hhhhHHHHHHHHHHHHHhCC-----CcHHHHHHHHH
Q 008818 455 AGFAAVQKTHHEVAAAFETEENELSKM--EECAGAGESAFLD--QASAVNVAKECLLAALKADP-----KAAHIWANLAN 525 (552)
Q Consensus 455 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~ 525 (552)
..+...|.+.|.+++|+..++.++... ....+..+|.+|. +.++..+.++.|...+.+.| +++..|..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 235666778888888888888866533 3345666666665 45677888888887777777 67778888888
Q ss_pred HHHHcCChhHHHHHH
Q 008818 526 AYYLTGDHRSSGKCL 540 (552)
Q Consensus 526 ~~~~~g~~~~A~~~~ 540 (552)
+|...++++.|+...
T Consensus 291 ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 291 LYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHhhchHHHHHHHH
Confidence 888888888877654
No 109
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=4.9e-16 Score=144.14 Aligned_cols=150 Identities=12% Similarity=0.071 Sum_probs=134.4
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
.|+...++..+..+....+..++|+..+.+++.++|++..+|+..+.++..+| .+++++..+++++..+|++..+|...
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34455566666666666677789999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHhhcccccccccccccchhHHHh-c-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH--------HHHH
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQA-S-AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR--------SSGK 392 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~ 392 (552)
+.++. .. + +++++++++.++++.+|.+..+|..++.+....|.++ +++.
T Consensus 130 ~wlL~---------------------~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 130 LLLLD---------------------RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp HHHHH---------------------HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHH---------------------HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 99887 44 5 7899999999999999999999999999999999988 9999
Q ss_pred HHHHHHhhCCCCcchHHHHHHH
Q 008818 393 CLEKAAKLEPNCMSTRYAVAVS 414 (552)
Q Consensus 393 ~~~~al~~~p~~~~~~~~la~~ 414 (552)
+++++++.+|.|..+|...+..
T Consensus 189 ~~~k~I~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 189 WCNEMLRVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999998888777653
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=1.8e-17 Score=136.98 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=95.3
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35777788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 008818 315 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 373 (552)
Q Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 373 (552)
++.+++.+|.++. ..|++++|+..|+++++++|+++..
T Consensus 88 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLL---------------------QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 8888887777777 7788888888888888877765544
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=1.7e-16 Score=162.72 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=103.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccc
Q 008818 261 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGAN 340 (552)
Q Consensus 261 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 340 (552)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------- 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW------------- 68 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------
Confidence 4789999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 341 TGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 341 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
..|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|+++++++|++..++
T Consensus 69 --------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (568)
T 2vsy_A 69 --------TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128 (568)
T ss_dssp --------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 899999999999999999999999999999999999999999999999999999875443
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=1.1e-18 Score=165.84 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=162.4
Q ss_pred CchhHHHHHHHHHH----HHhcCcchHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008818 226 EPEELEEILSKLKE----SMQSDTRQAVVWNTLGLILL------------KSGRLQSSISVLSSLLAVDPNNCDCIGNLG 289 (552)
Q Consensus 226 ~~~~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la 289 (552)
..+.+++|+..++. ++.+.|.. +|..+|.... .++++++|+..|++++..+|.+..++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 35789999999999 88898886 5666665543 556778888888888888888888888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 290 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
.+++..|++++|+..|++++.++|++.... . .......|.
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------------------------------~-------~~~~~~~~~ 194 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------------------------N-------EEAQKAQAL 194 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------------------------S-------HHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCC---------------------------------h-------HHHHHHHHH
Confidence 999999999999999999988888764210 0 111122234
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCC
Q 008818 370 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 449 (552)
Q Consensus 370 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (552)
...++.++|.+|..+|++++|+.+|+++++++|++..+++.
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--------------------------------------- 235 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR--------------------------------------- 235 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---------------------------------------
Confidence 47889999999999999999999999999999987544433
Q ss_pred CHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 008818 450 PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 529 (552)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 529 (552)
+|.++...|++++|+.+|+++++++|++..++..+|.++..
T Consensus 236 ---------------------------------------lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 236 ---------------------------------------RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp ---------------------------------------HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 34477788999999999999999999999999999999999
Q ss_pred cCChhHH-HHHHHHHHHHhc
Q 008818 530 TGDHRSS-GKCLEKVLMVYC 548 (552)
Q Consensus 530 ~g~~~~A-~~~~~~al~l~~ 548 (552)
.|++++| ...|++++..+.
T Consensus 277 ~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 9999999 568888887664
No 113
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=1.6e-17 Score=157.80 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=144.0
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGI 290 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 290 (552)
..+++++|+..|++++..+|.++.++..+|.+++..|++++|+..|++++.++|++ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34566788888889999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc
Q 008818 291 AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 370 (552)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (552)
+|..+|++++|+.+|+++++++|++..+++.+|.++. ..|++++|+..|+++++++|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL---------------------AVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 008818 371 AHIWANLANAYYLTGDHRSS-GKCLEKAAKL 400 (552)
Q Consensus 371 ~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 400 (552)
..++..++.++..+|++++| ...|++++..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 5577777654
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.71 E-value=1e-15 Score=135.10 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQ 306 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 306 (552)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4678889998875 67899999999999999999999999999875 689999999999998 7 9999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH-
Q 008818 307 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYL- 383 (552)
Q Consensus 307 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~- 383 (552)
++.. +.++.+++.+|.++..-.+ ..+++++|+.+|+++++..+ .++.+++.||.+|..
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g-----------------~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQA-----------------GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGG-----------------SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCC-----------------CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 9965 6789999999998872110 27899999999999999988 459999999999999
Q ss_pred ---cCChHHHHHHHHHHHhhCCCCcchH
Q 008818 384 ---TGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 384 ---~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
.+++++|+.+|+++++. +.++.+.
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 88999999999999988 4444333
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=7.8e-17 Score=133.14 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccch
Q 008818 266 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 345 (552)
Q Consensus 266 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (552)
.+-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++.
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------------ 66 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ------------------ 66 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------------
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH------------------
Confidence 33457899999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 008818 346 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 408 (552)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (552)
..|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+.+|+++++++|+++...
T Consensus 67 ---~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 67 ---AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp ---HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred ---HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999999999999999999999999999999999887654
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.71 E-value=8.8e-16 Score=124.68 Aligned_cols=134 Identities=30% Similarity=0.506 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 328 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 328 (552)
.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++...|.+...+..++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY- 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 329 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus 81 --------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 --------------------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp --------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred --------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999999999999999999999999999999999999999999999886
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=1e-16 Score=131.70 Aligned_cols=123 Identities=18% Similarity=0.126 Sum_probs=87.3
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 235 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 235 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008818 315 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 378 (552)
Q Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 378 (552)
++.+++.+|.++. ..|++++|+..|+++++++|+++.......
T Consensus 85 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 85 EPRFPFHAAECHL---------------------QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 7777777777666 677777777777777777666554444333
No 118
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.70 E-value=8.5e-15 Score=149.77 Aligned_cols=395 Identities=10% Similarity=-0.024 Sum_probs=253.0
Q ss_pred hhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---chHHHHHHHHHHH
Q 008818 109 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ---PLKAVSSYEKAEE 185 (552)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~ 185 (552)
..|+++|..+|.+...|...... ....+.+..++.++++++...|.....|......-.+.|. ++.+..+|++++.
T Consensus 53 ~~lE~~l~~np~d~~~W~~yi~~-~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 53 GKLNDMIEEQPTDIFLYVKLLKH-HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCcCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 67899999999999999875554 4455689999999999999999999999999999999999 9999999999998
Q ss_pred HHhhccccccchhHHHHHHHhhhhcccccccCCCccccccC-chhHHHHHHHHHHHHh---c-CcchHHHHHHHHHHHH-
Q 008818 186 ILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE-PEELEEILSKLKESMQ---S-DTRQAVVWNTLGLILL- 259 (552)
Q Consensus 186 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~A~~~~~~al~---~-~p~~~~~~~~la~~~~- 259 (552)
..|.+. ..+++. .+.... ...++. ... .+..+.....|++++. . ++....+|........
T Consensus 132 ~~~~~~----sv~LW~---~Yl~f~---~~~~~~----~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 132 KELGNN----DLSLWL---SYITYV---RKKNDI----ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp SSSCCC----CHHHHH---HHHHHH---HHHSCS----TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred hcCCCC----CHHHHH---HHHHHH---HHhccc----ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 762110 111111 000000 000000 000 0112223344444443 2 3333344444333222
Q ss_pred --------HcCCHHHHHHHHHHHHhcCCCCH-------------------------------------------------
Q 008818 260 --------KSGRLQSSISVLSSLLAVDPNNC------------------------------------------------- 282 (552)
Q Consensus 260 --------~~~~~~~A~~~~~~al~~~p~~~------------------------------------------------- 282 (552)
.+++.+.+..+|++++.+-....
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 12234445555555554211111
Q ss_pred -------------------------HHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008818 283 -------------------------DCIGNLGIAYFQSG-------DMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 330 (552)
Q Consensus 283 -------------------------~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 330 (552)
..|......-...+ ..+.....|++++...|.++..|+..+..+.
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~--- 354 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQG--- 354 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH---
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---
Confidence 11111111111111 1233456788888888888888888877776
Q ss_pred cccccccccccccchhHHHhcCHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------
Q 008818 331 GSVLAGAGANTGEGACLDQASAVNVAK-ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE-------- 401 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------- 401 (552)
..|+.++|+ ..|++++...|.+..+|..++.+....|++++|...|++++...
T Consensus 355 ------------------~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 355 ------------------EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp ------------------HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 778888897 99999999999999999999999999999999999999999752
Q ss_pred ---CCC-----------cchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchh-h
Q 008818 402 ---PNC-----------MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-E 466 (552)
Q Consensus 402 ---p~~-----------~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 466 (552)
|.+ ...|...+. +.. .. ..+..+...+...+... ......+|...+.+....+ +
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~--~er---R~---~~l~~AR~vf~~A~~~~---~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMN--TMK---RI---QGLAASRKIFGKCRRLK---KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHH--HHH---HH---HCHHHHHHHHHHHHHTG---GGSCTHHHHHHHHHHHTTTSC
T ss_pred hccCcchhhhhhhccchHHHHHHHHH--HHH---Hc---CCHHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHhCCC
Confidence 421 112222221 111 11 11222222232332220 1223467777777776665 4
Q ss_pred HHHHHHHHHhhhcchh--hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCChhHHHHHHH
Q 008818 467 VAAAFETEENELSKME--ECAGAGESAFLDQASAVNVAKECLLAALKADP---KAAHIWANLANAYYLTGDHRSSGKCLE 541 (552)
Q Consensus 467 ~~~A~~~~~~~l~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~ 541 (552)
++.|...|..++...+ ...|...+......|+.+.|...|++++...| ....+|..........|+.+.+..+++
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999887444 34565677777788999999999999999888 366888888888999999999999999
Q ss_pred HHHHHhccc
Q 008818 542 KVLMVYCSS 550 (552)
Q Consensus 542 ~al~l~~~~ 550 (552)
++.+.+|++
T Consensus 566 R~~~~~P~~ 574 (679)
T 4e6h_A 566 RFFEKFPEV 574 (679)
T ss_dssp HHHHHSTTC
T ss_pred HHHHhCCCC
Confidence 999999875
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.69 E-value=5.2e-17 Score=145.70 Aligned_cols=201 Identities=12% Similarity=0.016 Sum_probs=167.4
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTL-------GLILLKSGRLQSSISVLSSLLAVDPNNC----------------- 282 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------- 282 (552)
.+++..|...|.++++.+|+.+++|..+ +.++...+++.+++..+++.+.+.|...
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 4777999999999999999999999999 8999999999999999999999877543
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 283 ----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 283 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
+++..++.++...|++++|.+.|..++...|++. ..+.++.+++ +.+++++|+.
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~---------------------~~~r~~dA~~ 156 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG---------------------AAERWTDVID 156 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH---------------------HcCCHHHHHH
Confidence 3455688999999999999999999999899888 8888888877 9999999999
Q ss_pred HHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHH
Q 008818 359 CLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEM 436 (552)
Q Consensus 359 ~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~ 436 (552)
.|+.+....+. ...+++.+|.++..+|++++|+.+|++++... ..+..
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~----------------------------- 206 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEAC----------------------------- 206 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTT-----------------------------
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccc-----------------------------
Confidence 99988775322 14589999999999999999999999998532 11110
Q ss_pred HHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Q 008818 437 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 516 (552)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (552)
...+++.+|.++.+.|+.++|+..|++++..+|+
T Consensus 207 ---------------------------------------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 207 ---------------------------------------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 0123344555888899999999999999999998
Q ss_pred HHHHHHHHH
Q 008818 517 AHIWANLAN 525 (552)
Q Consensus 517 ~~~~~~lg~ 525 (552)
..++..|..
T Consensus 241 ~~~~~aL~~ 249 (282)
T 4f3v_A 241 PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 887776643
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.69 E-value=7.2e-16 Score=136.07 Aligned_cols=176 Identities=10% Similarity=0.010 Sum_probs=102.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCcccc
Q 008818 144 TGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 223 (552)
Q Consensus 144 ~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (552)
+.|+++.+ ..++.+++.+|.+|...+++++|+.+|+++++.
T Consensus 7 ~~~~~aa~--~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------------------------- 47 (212)
T 3rjv_A 7 SQYQQQAE--AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------------------------------------- 47 (212)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------------------------------------
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------------------------------------
Confidence 44444443 478999999999999999999999999998764
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----c
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----S 295 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 295 (552)
.++.+++.+|.+|.. + ++++|+.+|+++++ +.++.+++++|.+|.. .
T Consensus 48 ----------------------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~ 102 (212)
T 3rjv_A 48 ----------------------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGA 102 (212)
T ss_dssp ----------------------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSS
T ss_pred ----------------------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCc
Confidence 123445555555554 4 55555555555533 3455555555555554 5
Q ss_pred CCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 008818 296 GDMEQSAKCFQDLILKDQ--NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 373 (552)
Q Consensus 296 g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 373 (552)
+++++|+.+|+++++..+ .++.+++.+|.++....+ ..+++++|+.+|+++++. +.++.+
T Consensus 103 ~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g-----------------~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 103 TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVH-----------------GPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSS-----------------SSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCC-----------------CCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 555555555555555544 235555555555541000 144555555555555555 344455
Q ss_pred HHHHHHHHHHc-C-----ChHHHHHHHHHHHhhC
Q 008818 374 WANLANAYYLT-G-----DHRSSGKCLEKAAKLE 401 (552)
Q Consensus 374 ~~~la~~~~~~-~-----~~~~A~~~~~~al~~~ 401 (552)
+++||.+|... | ++++|+.+|+++.+..
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55555555542 2 5566666666665553
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.69 E-value=3.6e-16 Score=144.52 Aligned_cols=197 Identities=14% Similarity=0.011 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 279 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 279 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
|.+...+..+|.++...|++++|+..|++++..+|++..++.++|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~A~~ 59 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQALA 59 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 4567788888888888888888888888888888888888888888887 8888999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHH
Q 008818 359 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 438 (552)
Q Consensus 359 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~ 438 (552)
.|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++...+.......+...
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~------------------- 120 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA------------------- 120 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH-------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH-------------------
Confidence 9999999999989999999999999999999999999999988866432211111111000
Q ss_pred HhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH
Q 008818 439 ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH 518 (552)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 518 (552)
....+.. ......+.+......++.. ..|++++|+..++++++++|++..
T Consensus 121 ------------------------~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~ 170 (281)
T 2c2l_A 121 ------------------------KKKRWNS----IEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGH 170 (281)
T ss_dssp ------------------------HHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHH
T ss_pred ------------------------HHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhh
Confidence 0000000 0001111111222222222 267888888888888888888888
Q ss_pred HHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 008818 519 IWANLANAYYLT-GDHRSSGKCLEKVLM 545 (552)
Q Consensus 519 ~~~~lg~~~~~~-g~~~~A~~~~~~al~ 545 (552)
....++.++... +.+++|...|.++.+
T Consensus 171 ~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 171 IRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888887777665 667888888887754
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.69 E-value=2.2e-16 Score=141.66 Aligned_cols=215 Identities=12% Similarity=-0.016 Sum_probs=171.0
Q ss_pred HHhHHHHHHHHHHHHHhCCCChHHHHHH-------HHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhh
Q 008818 136 EEKVSSLKTGLVHVARKMPKNAHAHFLL-------GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHA 208 (552)
Q Consensus 136 ~~~~~~a~~~l~~~l~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 208 (552)
.++...|.+.|.++++.+|+.+++|..+ +.++...+++.+++..+++++.+.|..-. .++.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~------------a~~~ 86 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN------------ARIA 86 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC------------CEEE
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh------------hhhc
Confidence 4678889999999999999999999999 89999999999999999999998654311 1111
Q ss_pred -hcccccccCCCccccccCchhHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 008818 209 -QCLLPESSGDNSLDKELEPEELEEILSKLKESMQS-DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG 286 (552)
Q Consensus 209 -~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 286 (552)
.+ .| |+. .. --+-.+++..++.++...|+|++|.+.|..++...|++. .++
T Consensus 87 ~~g-~y---~~~----------------------~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~ 139 (282)
T 4f3v_A 87 IGG-LY---GDI----------------------TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAW 139 (282)
T ss_dssp CCT-TT---CCC----------------------EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHH
T ss_pred cCC-cc---ccc----------------------ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHH
Confidence 11 00 011 00 002245777889999999999999999999999899888 999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 287 NLGIAYFQSGDMEQSAKCFQDLILKDQNH--PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
.+|.++...++|++|+..|+++....+.. ..+++.+|.++. .+|++++|+.+|++++
T Consensus 140 ~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~---------------------~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 140 MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA---------------------NLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHh
Confidence 99999999999999999998776643111 246777777776 8999999999999998
Q ss_pred hcC--CC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 365 KAD--PK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 365 ~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..+...+
T Consensus 199 ~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 199 DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 654 55 6779999999999999999999999999999998 6555444
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.68 E-value=2.7e-15 Score=132.73 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
....++.+|.++...|++++|+..|++++ +| ++.+++.+|.+|...|++++|+..|++++.++|++..++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34567889999999999999999999996 33 7899999999999999999999999999999999999999999998
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHcCChHHH
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----------------HIWANLANAYYLTGDHRSS 390 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A 390 (552)
. ..|++++|+..|+++++..|.+. .+++.+|.++..+|++++|
T Consensus 82 ~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 82 Y---------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred H---------------------HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 8 89999999999999999887755 9999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHH
Q 008818 391 GKCLEKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 391 ~~~~~~al~~~p~~~~~~~~la~~~l 416 (552)
+.+|+++++++|++.......+...+
T Consensus 141 ~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 141 EEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp HHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCcccccchHHHHHHHH
Confidence 99999999999988766555554444
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.9e-15 Score=121.27 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=104.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
|..+..+..+|..++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Q 008818 325 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYL 383 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 383 (552)
++. ..|++++|+..|+++++++ |.+..++..++.+...
T Consensus 81 ~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQI---------------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHH---------------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHH---------------------HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 887 8889999999999999988 8888888888877654
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=5.4e-16 Score=127.35 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=111.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHH
Q 008818 269 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 348 (552)
Q Consensus 269 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (552)
..|++++.++|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------------------- 63 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ--------------------- 63 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------
Confidence 57889999999999999999999999999999999999999999999999999999988
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 008818 349 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 409 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (552)
..|++++|+.+|++++.++|+++.+++.+|.+|..+|++++|+.+|++++.++|+++....
T Consensus 64 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999998876654
No 126
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=8.2e-14 Score=142.55 Aligned_cols=379 Identities=12% Similarity=0.045 Sum_probs=252.4
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCcccc
Q 008818 144 TGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 223 (552)
Q Consensus 144 ~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (552)
..+++.+..+|.+...|..+.......+.++.+...|++++...|.. ..+ |...+..
T Consensus 53 ~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~------~~l------W~~Yi~~----------- 109 (679)
T 4e6h_A 53 GKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLM------ANI------WCMRLSL----------- 109 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH------HHHHHHH-----------
T ss_pred HHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCC------HHH------HHHHHHH-----------
Confidence 34566667899999999999999999999999999999999997753 111 1111111
Q ss_pred ccCchh---HHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHhc----CCCCHHHHH
Q 008818 224 ELEPEE---LEEILSKLKESMQSDT--RQAVVWNTLGLILLKSGRL----QS----SISVLSSLLAV----DPNNCDCIG 286 (552)
Q Consensus 224 ~~~~~~---~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~----~~----A~~~~~~al~~----~p~~~~~~~ 286 (552)
.+..++ ++.+...|++++...| .++.+|..........++. ++ ..+.|++|+.. ++....+|.
T Consensus 110 E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~ 189 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWN 189 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred HHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHH
Confidence 223455 7999999999999983 5677888877766665554 33 44788888763 676777777
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHhhCCCC-H-HHHHHHHHHHHH-------------------------hh
Q 008818 287 NLGIAYF---------QSGDMEQSAKCFQDLILKDQNH-P-AALINYAALLLC-------------------------KY 330 (552)
Q Consensus 287 ~la~~~~---------~~g~~~~A~~~~~~al~~~p~~-~-~~~~~l~~~~~~-------------------------~~ 330 (552)
....... ..++.+.+...|++++.+ |.. . ..|......-.. ..
T Consensus 190 ~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 190 EYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665543 345678899999999964 432 2 122111111000 00
Q ss_pred c---ccccc--c----------------------ccccccchhHHHhc--------CHHHHHHHHHHHHhcCCCcHHHHH
Q 008818 331 G---SVLAG--A----------------------GANTGEGACLDQAS--------AVNVAKECLLAALKADPKAAHIWA 375 (552)
Q Consensus 331 ~---~~~~~--~----------------------~~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~ 375 (552)
. ..... + ..|..... +.+.. ..+.....|++++...|.++.+|+
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~-fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~ 347 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR-WESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWF 347 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH-HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH-HHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 0 00000 0 00000111 11111 134466789999999999999999
Q ss_pred HHHHHHHHcCChHHHH-HHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHh---hcCCCC-----
Q 008818 376 NLANAYYLTGDHRSSG-KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL---REGDPV----- 446 (552)
Q Consensus 376 ~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----- 446 (552)
..+..+...|+.++|. ..|++++...|.+...+...+....... ....+..-+..+...+...+ ....+.
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~-~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT-KIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 9999999999999997 9999999999988766665554332211 11111111222222111111 010000
Q ss_pred ---CCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc-h--hhhhhhhHHHHHHhhh-hHHHHHHHHHHHHHhCCCcHHH
Q 008818 447 ---QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK-M--EECAGAGESAFLDQAS-AVNVAKECLLAALKADPKAAHI 519 (552)
Q Consensus 447 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~ 519 (552)
......+|...+.+....|..+.|...+.+++.. . ....|...|....+.+ +++.|...|+++++..|+++..
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHH
Confidence 0013457999999999999999999999998765 2 2344555555555655 4899999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 520 WANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 520 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
|...+......|+.+.|..+|++++...+
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998765
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=8e-16 Score=142.15 Aligned_cols=169 Identities=11% Similarity=0.021 Sum_probs=120.2
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHH
Q 008818 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 233 (552)
Q Consensus 154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 233 (552)
|.++..++.+|..++..|++++|+..|+++++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------------------------------- 33 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR----------------------------------------------- 33 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------------------------
Confidence 456667777777777777777666666666654
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008818 234 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 234 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 313 (552)
+|+++.++.++|.+|..+|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|
T Consensus 34 ----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 34 ----------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp ----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 5666778888999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 008818 314 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 393 (552)
Q Consensus 314 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 393 (552)
++...+........ ...++...........+.+..+...++.++ .|++++|++.
T Consensus 104 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~ 157 (281)
T 2c2l_A 104 EQRLNFGDDIPSAL------------------------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEE 157 (281)
T ss_dssp HTTCCCCSHHHHHH------------------------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTT
T ss_pred cchhhHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 65322211111111 112222333333345666666766666654 6788888888
Q ss_pred HHHHHhhCCCCc
Q 008818 394 LEKAAKLEPNCM 405 (552)
Q Consensus 394 ~~~al~~~p~~~ 405 (552)
|+++++.+|++.
T Consensus 158 ~~~al~~~p~~~ 169 (281)
T 2c2l_A 158 CQRNHEGHEDDG 169 (281)
T ss_dssp TSGGGTTTSCHH
T ss_pred HHhhhccccchh
Confidence 888888888654
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.66 E-value=1.2e-15 Score=122.29 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=92.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
++.+.++..+|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++...+..++.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999887665555555
Q ss_pred HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 325 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
++. .+|.++...|++++|++.|++++...|+
T Consensus 85 ~~~--------------~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMS--------------RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHH--------------HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 544 2355555777777777777777776664
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.65 E-value=1.2e-15 Score=130.73 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=118.8
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--HH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA-YFQSGDM--EQ 300 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 300 (552)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++.++|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 301 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 301 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
|+..|++++..+|++..++..+|.++. ..|++++|+..|+++++.+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAF---------------------MQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999999888 89999999999999999999875544
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.65 E-value=7.6e-15 Score=124.01 Aligned_cols=134 Identities=14% Similarity=0.075 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
.+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH--HHHHcCChHHHHHHHHHHHhhC
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN--AYYLTGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~~~~~~A~~~~~~al~~~ 401 (552)
. ..|++++|+.+|+++++.+|.+..++..++. .+...|++++|+..+.++..+.
T Consensus 92 ~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 M---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 8 8999999999999999999999988855554 4888999999999999877653
No 131
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.64 E-value=6.9e-16 Score=134.83 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=128.7
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC----------------DCIGNLG 289 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la 289 (552)
..|+++++.+.+.......+..+..+..+|.+++..|++++|+..|++++.+.|.++ .++.++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 345667787777777777777888999999999999999999999999999999887 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 290 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
.++..+|++++|+.++++++.++|++..+++.+|.++. ..|++++|+..|+++++++|+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM---------------------YFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999988 899999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHH-HHHHHHHh
Q 008818 370 AAHIWANLANAYYLTGDHRSSG-KCLEKAAK 399 (552)
Q Consensus 370 ~~~~~~~la~~~~~~~~~~~A~-~~~~~al~ 399 (552)
+..++..++.++..+++..++. ..|.+.+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999888887 45555544
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=3.1e-15 Score=128.06 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=119.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhhcccccc
Q 008818 258 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL-LLCKYGSVLAG 336 (552)
Q Consensus 258 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~~~ 336 (552)
+...|++++|+..|++++..+|+++.+++.+|.+|...|++++|+.+|++++.++|++..++..+|.+ +.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--------- 90 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY--------- 90 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH---------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------
Confidence 35678999999999999999999999999999999999999999999999999999999999999998 65
Q ss_pred cccccccchhHHHhcCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 008818 337 AGANTGEGACLDQASAV--NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 409 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (552)
..|++ ++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.++|++.....
T Consensus 91 ------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 91 ------------QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp ------------HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred ------------hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 78888 99999999999999999999999999999999999999999999999999876543
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.4e-14 Score=146.38 Aligned_cols=191 Identities=11% Similarity=0.005 Sum_probs=161.5
Q ss_pred HcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008818 260 KSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD----------MEQSAKCFQDLILKDQNHPAALINYAALLLC 328 (552)
Q Consensus 260 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 328 (552)
..|+ .++|++.+.+++.++|++..+|+..+.++..+|+ +++++..++++++.+|++..+|...+.++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~- 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS- 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 4444 4688999999999999999999999999999998 999999999999999999999999999988
Q ss_pred hhcccccccccccccchhHHHhc--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCc
Q 008818 329 KYGSVLAGAGANTGEGACLDQAS--AVNVAKECLLAALKADPKAAHIWANLANAYYLTG-DHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~ 405 (552)
..+ +++++++++.++++.+|.+..+|..++.+....| .++++++++.++++.+|.+.
T Consensus 119 --------------------~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~ 178 (567)
T 1dce_A 119 --------------------RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (567)
T ss_dssp --------------------TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred --------------------HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence 777 7799999999999999999999999999999999 99999999999999999998
Q ss_pred chHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhh
Q 008818 406 STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 485 (552)
Q Consensus 406 ~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 485 (552)
.+|...+..... .+.... ....
T Consensus 179 saW~~r~~ll~~----------------------------------------------l~~~~~-----------~~~~- 200 (567)
T 1dce_A 179 SSWHYRSCLLPQ----------------------------------------------LHPQPD-----------SGPQ- 200 (567)
T ss_dssp HHHHHHHHHHHH----------------------------------------------HSCCCC-----------SSSC-
T ss_pred cHHHHHHHHHHh----------------------------------------------hccccc-----------cccc-
Confidence 777766553211 000000 0000
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH
Q 008818 486 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 535 (552)
.-...+.++++++++.+++.++|++..+|+.++.++...+++++
T Consensus 201 ------~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 ------GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ------CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ------ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 00023568999999999999999999999999999999988665
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.64 E-value=9.3e-15 Score=117.83 Aligned_cols=126 Identities=18% Similarity=0.150 Sum_probs=118.7
Q ss_pred hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008818 242 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 321 (552)
Q Consensus 242 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 321 (552)
..+|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.++++++..+|++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 008818 322 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 388 (552)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 388 (552)
+|.++. ..|++++|+..|+++++.+|++..++..+|.++...|+++
T Consensus 86 ~~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 86 MGLALS---------------------SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHH---------------------HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 998888 8999999999999999999999999999999999998863
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=7.4e-15 Score=148.39 Aligned_cols=163 Identities=12% Similarity=0.062 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DM 298 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~ 298 (552)
++|+..+.+++..+|++..+|+.++.++...|+ +++++..++++++.+|++..+|+..+.++...| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 789999999999999999999999999999998 999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHH
Q 008818 299 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS-AVNVAKECLLAALKADPKAAHIWANL 377 (552)
Q Consensus 299 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l 377 (552)
++++.+++++++.+|.+..+|...+.++. ..| .++++++++.++++.+|.+..+|..+
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~---------------------~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHH---------------------HcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999999999999999999999999887 777 89999999999999999999999999
Q ss_pred HHHHHHc--------------CChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 008818 378 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 414 (552)
Q Consensus 378 a~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 414 (552)
+.++..+ +.+++|++++.+++.++|++..+|+.+...
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999885 567999999999999999999999877653
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-15 Score=118.36 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=115.6
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
..|....+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++++.+|++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 386 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 386 (552)
|.++. ..|++++|+..|+++++.+|.+..++..++.++..+|+
T Consensus 91 a~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALE---------------------AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHH---------------------HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99888 89999999999999999999999999999999988774
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=6.3e-15 Score=124.36 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 246 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 246 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
.++..++.+|.+++..|++++|+.+|++++.++|+++.+++.+|.+|...|++++|+.+|+++++++|++..+++.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555544444444444444444
Q ss_pred HH
Q 008818 326 LL 327 (552)
Q Consensus 326 ~~ 327 (552)
+.
T Consensus 89 ~~ 90 (164)
T 3sz7_A 89 RF 90 (164)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 138
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.62 E-value=3e-14 Score=115.45 Aligned_cols=106 Identities=27% Similarity=0.447 Sum_probs=81.7
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
.+|.+..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 109 (136)
T 2fo7_A 30 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109 (136)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34455666777788888888888888888888888887777788888888888888888888888888877777777777
Q ss_pred HHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
+.++. ..|++++|+..+++++..+|+
T Consensus 110 a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 110 GNAYY---------------------KQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHH---------------------TTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHH---------------------HHccHHHHHHHHHHHHccCCC
Confidence 77766 777888888888888777764
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.62 E-value=5e-16 Score=153.90 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=137.3
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLG 289 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la 289 (552)
...+++++|+..|+.++...|..+..+..+|.+++..|+|++|+..|++++.++|.+ ..+++++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 355677888889999999999999999999999999999999999999999999998 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 290 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
.+|..+|++++|+.+|++++.++|++..+++.+|.++. ..|++++|+..|+++++++|+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~---------------------~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL---------------------LMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998 899999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHH-HHHHH
Q 008818 370 AAHIWANLANAYYLTGDHRSSGKC-LEKAA 398 (552)
Q Consensus 370 ~~~~~~~la~~~~~~~~~~~A~~~-~~~al 398 (552)
+..++..++.++..++++++|... |++++
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753 44443
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=1.3e-14 Score=122.43 Aligned_cols=119 Identities=20% Similarity=0.195 Sum_probs=111.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 278 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 278 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
++.+...++.+|.++...|++++|+.+|+++++++|++..++..+|.++. ..|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---------------------~~g~~~~A~ 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS---------------------ASGQHEKAA 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 44567899999999999999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 008818 358 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 417 (552)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~ 417 (552)
..|+++++++|++..+|+.+|.+|..+|++++|+.+|+++++++|++...++..++..+.
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988777665443
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.3e-14 Score=116.32 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHH
Q 008818 279 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 358 (552)
Q Consensus 279 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 358 (552)
|..+..+..+|..++..|++++|+..|+++++++|+++.++..+|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~---------------------~~~~~~~A~~ 59 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIA 59 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 3456789999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHHHH
Q 008818 359 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAVAV 413 (552)
Q Consensus 359 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~ 413 (552)
.|+++++++|+++.+++.+|.++..+|++++|+..|+++++++ |++..++..+..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 877766655543
No 142
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.61 E-value=2e-13 Score=124.13 Aligned_cols=147 Identities=8% Similarity=-0.008 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 233 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 233 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
|+..+++.+...+....++..+|.++...|++++|+..+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67888888877655566778999999999999999999999999987 8899999999999999999999999999999
Q ss_pred hCCC----CHHHHHHHHHHHHHhhcccccccccccccchhHHHhc--CHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHH
Q 008818 311 KDQN----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS--AVNVAKECLLAALKADPK--AAHIWANLANAYY 382 (552)
Q Consensus 311 ~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 382 (552)
.+|+ +......++..+... ..| ++.+|..+|+++.+..|+ ....+++ ++.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l-------------------~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~ 222 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKF-------------------ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHL 222 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHH-------------------HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHH
T ss_pred cCccccccchHHHHHHHHHHHHH-------------------HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHH
Confidence 9883 234445555443311 344 899999999999998887 3334444 899
Q ss_pred HcCChHHHHHHHHHHHhhC
Q 008818 383 LTGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~ 401 (552)
.+|++++|...++.+++..
T Consensus 223 ~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 223 QQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHTCHHHHHHHHHHHHSHH
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999999888774
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=8e-14 Score=129.87 Aligned_cols=180 Identities=10% Similarity=-0.025 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 360 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 360 (552)
....+...+..+...|++++|+..+.++++..+........+. .+. .+|.++...|++++|+..|
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~A~~~~ 138 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ-WQY--------------YVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHH-HHH--------------HHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHH-HHH--------------HHHHHHhcCCCHHHHHHHH
Confidence 3445566777778888888888888888877666543321111 111 1344455888999999999
Q ss_pred HHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCCCcchHHHHHHHHHHhHhhccCchHHHhH
Q 008818 361 LAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKL---EPNCMSTRYAVAVSRIKDAERSQEPTEQLSW 431 (552)
Q Consensus 361 ~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~ 431 (552)
++++...+.. ..++..+|.+|..+|++++|+.+|++++.+ .|++....
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~----------------------- 195 (293)
T 2qfc_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD----------------------- 195 (293)
T ss_dssp HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-----------------------
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch-----------------------
Confidence 9998765442 668999999999999999999999999954 34321000
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 008818 432 AGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (552)
..+++++|.+|...|++++|+.+|+++++
T Consensus 196 ---------------------------------------------------~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 196 ---------------------------------------------------VKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 02334556677777778888888888877
Q ss_pred hCCC------cHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHhcc
Q 008818 512 ADPK------AAHIWANLANAYYLTGDHRSS-GKCLEKVLMVYCS 549 (552)
Q Consensus 512 ~~p~------~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~l~~~ 549 (552)
+.++ ...+++++|.+|..+|++++| ..+|++|+.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 6432 267888999999999999999 7789999887754
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=5.9e-14 Score=130.79 Aligned_cols=177 Identities=11% Similarity=0.017 Sum_probs=138.2
Q ss_pred CCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHH
Q 008818 154 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 233 (552)
Q Consensus 154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 233 (552)
|.....+...+..+...|++++|+..+.++++..+.. +..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~------~~~---------------------------------- 111 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH------PEF---------------------------------- 111 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC------HHH----------------------------------
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC------hhH----------------------------------
Confidence 4445566677777888888888888888777652210 000
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008818 234 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQD 307 (552)
Q Consensus 234 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (552)
+.....++.+|.++...|++++|+.+|++++...+.. ..++..+|.+|...|++++|+.+|++
T Consensus 112 -----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~k 180 (293)
T 2qfc_A 112 -----------QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp -----------HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0123345678999999999999999999999875443 56899999999999999999999999
Q ss_pred HH---hhCCCCH----HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC------cHHHH
Q 008818 308 LI---LKDQNHP----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIW 374 (552)
Q Consensus 308 al---~~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~ 374 (552)
++ +..|++. .++.++|.++. ..|++++|+.++++++++.++ ...++
T Consensus 181 al~~~~~~~~~~~~~~~~~~nlg~~y~---------------------~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 181 ILKQLEALHDNEEFDVKVRYNHAKALY---------------------LDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHhcCccccchHHHHHhHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99 4456543 45666676666 999999999999999987543 37899
Q ss_pred HHHHHHHHHcCChHHH-HHHHHHHHhhCC
Q 008818 375 ANLANAYYLTGDHRSS-GKCLEKAAKLEP 402 (552)
Q Consensus 375 ~~la~~~~~~~~~~~A-~~~~~~al~~~p 402 (552)
+++|.+|..+|++++| ..+|++++.+..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999 888999987643
No 145
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.58 E-value=6.1e-14 Score=123.97 Aligned_cols=139 Identities=12% Similarity=0.172 Sum_probs=121.4
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
+..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.+|...|++++|+..
T Consensus 17 ~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp HHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH
Confidence 45677799999999996 33 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH----------------HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC
Q 008818 305 FQDLILKDQNHP----------------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 368 (552)
Q Consensus 305 ~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 368 (552)
|+++++..|.+. .++..+|.++. ..|++++|+..|+++++++|
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA---------------------KKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHcCc
Confidence 999999888776 88888888887 99999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 369 KAAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 369 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
++. .+..+.|+..+++...
T Consensus 153 ~~~------------~~~~~~a~~~~~~~~~ 171 (213)
T 1hh8_A 153 EPR------------HSKIDKAMECVWKQKL 171 (213)
T ss_dssp SGG------------GGHHHHHHHHHHTTCC
T ss_pred ccc------------cchHHHHHHHHHhccc
Confidence 863 2345556665554433
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.58 E-value=1.2e-13 Score=110.07 Aligned_cols=121 Identities=31% Similarity=0.445 Sum_probs=105.4
Q ss_pred Ccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008818 244 DTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 322 (552)
Q Consensus 244 ~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 322 (552)
+|.. ..+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++...|.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 3433 678888999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 385 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 385 (552)
+.++. ..|++++|+..|+++++.+|++..++..+|.++...|
T Consensus 84 a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYY---------------------KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH---------------------HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88887 8889999999999999999999999999998887654
No 147
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.57 E-value=2e-14 Score=116.38 Aligned_cols=106 Identities=11% Similarity=0.042 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------C-----HHHHHHHHHHHHHhhcccccccccccccchhHHHhcC
Q 008818 285 IGNLGIAYFQSGDMEQSAKCFQDLILKDQN-------H-----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 352 (552)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (552)
+..+|..++..|++++|+..|+++++++|+ + ..+|.++|.++. .+|+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~---------------------~Lgr 72 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA---------------------GLRS 72 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH---------------------HCCC
Confidence 344444444444444444444444444444 2 337888888777 9999
Q ss_pred HHHHHHHHHHHHhc-------CCCcHHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 353 VNVAKECLLAALKA-------DPKAAHIW----ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 353 ~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
+++|+..|++++++ +|++..+| +++|.++..+|++++|+.+|+++++++|++......+
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999 99999999 9999999999999999999999999999887555433
No 148
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.57 E-value=4.1e-16 Score=154.55 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHH----HHhcCcchHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008818 228 EELEEILSKLKE----SMQSDTRQAVVWNTLGLIL------------LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 291 (552)
Q Consensus 228 ~~~~~A~~~~~~----al~~~p~~~~~~~~la~~~------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 291 (552)
..++.|+..+++ ++.++|.. +|...|... ..++++++|+..|++++...|.....+..+|.+
T Consensus 200 ~~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~ 277 (457)
T 1kt0_A 200 IGIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTV 277 (457)
T ss_dssp HHHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHH
Confidence 467888887777 77788864 444444322 245677889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHH
Q 008818 292 YFQSGDMEQSAKCFQDLILKDQNH---------------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 356 (552)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 356 (552)
++..|++++|+..|++++.++|.+ ..++.++|.++. ..|++++|
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------------~~g~~~~A 336 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL---------------------KLREYTKA 336 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH---------------------HhcCHHHH
Confidence 999999999999999999999998 577777777777 99999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 357 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.
T Consensus 337 ~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 337 VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998766655544
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.57 E-value=3.4e-14 Score=115.72 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 323 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 323 (552)
+|.++..++.+|.+++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.++|++..+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHH
Q 008818 324 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANLANAY 381 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~ 381 (552)
.++. ..|++++|+..|+++++++|+ +..++..+..+.
T Consensus 85 ~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQL---------------------EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHH---------------------HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 6655 566666666666666666555 444444444443
No 150
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.57 E-value=2.2e-14 Score=133.69 Aligned_cols=157 Identities=12% Similarity=0.089 Sum_probs=128.8
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAV------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIA 291 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~ 291 (552)
++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++.+.+.. ..++.++|.+
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 34668889999999999987665433 34458999999999999999999999964432 3479999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 292 YFQSGDMEQSAKCFQDLILKD---QNH----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
|...|++++|+.+|+++++.. |.+ ..++.++|.++. ..|++++|+.++++++
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~---------------------~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY---------------------LDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---------------------HHhHHHHHHHHHHHHH
Confidence 999999999999999999532 122 234566666665 9999999999999999
Q ss_pred hcCCCc------HHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhC
Q 008818 365 KADPKA------AHIWANLANAYYLTGD-HRSSGKCLEKAAKLE 401 (552)
Q Consensus 365 ~~~p~~------~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~ 401 (552)
++.+.. +.++..+|.+|..+|+ +++|+.+|++++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 876443 7899999999999995 699999999999764
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.57 E-value=3.4e-14 Score=112.66 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 328 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 328 (552)
..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~- 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT- 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 329 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
..|++++|+..|+++++.+|++..
T Consensus 97 --------------------~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 --------------------NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --------------------HHHHHHHHHHHHHHHHC-------
T ss_pred --------------------HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 899999999999999999987643
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.57 E-value=1.8e-14 Score=116.61 Aligned_cols=111 Identities=9% Similarity=-0.015 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-------NCD-----CIGNLGIAYFQSGDMEQSAKCFQDLILK--- 311 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 311 (552)
.+..+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008818 312 ----DQNHPAAL----INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 378 (552)
Q Consensus 312 ----~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 378 (552)
+|++..+| +++|.++. .+|++++|+..|+++++++|++..+...+.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~---------------------~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALD---------------------GLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999 99999988 999999999999999999998655444333
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.56 E-value=4.2e-14 Score=113.26 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 360 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 360 (552)
.+.++.++|.+++..|++++|+.+|+++++++|++..++.++|.++. ..|++++|+..|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~---------------------~~~~~~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF---------------------EEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH---------------------HhhhHHHHHHHH
Confidence 45678899999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHhcCCCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 361 LAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 361 ~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
+++++++|++ ..++.++|.++..+|++++|+.+|++++...|+.
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 9999998764 4588999999999999999999999999998863
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.56 E-value=3.6e-14 Score=119.35 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV------------------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
.+..+..+|..++..|+|++|+..|++++.+ +|.+..++.++|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4667888899999999999999999999988 4555566677777777777777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHc
Q 008818 309 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-HIWANLANAYYLT 384 (552)
Q Consensus 309 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 384 (552)
+.++|+++.+++.+|.++. ..|++++|+..|++++.++|++. .+...++.+....
T Consensus 90 l~~~p~~~~a~~~~g~~~~---------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARI---------------------AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHH---------------------HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 7777777666666666666 66667777777777776666666 4555555554443
No 155
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.55 E-value=1.3e-13 Score=128.33 Aligned_cols=161 Identities=8% Similarity=-0.050 Sum_probs=135.1
Q ss_pred HhcCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhc
Q 008818 349 QASAVNVAKECLLAALKADPKAAH------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 422 (552)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~ 422 (552)
..|++++|+..++++++..+..+. .+..+|.++...|++++|+.+|++++.+.+.......
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~------------- 153 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ------------- 153 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH-------------
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH-------------
Confidence 889999999999999998776544 3446899999999999999999999997665433211
Q ss_pred cCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc---------hhhhhhhhHHHHH
Q 008818 423 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK---------MEECAGAGESAFL 493 (552)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~la~~~ 493 (552)
...++..+|.+|...|++++|+..|.+++.. ....+++++|.+|
T Consensus 154 ---------------------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 154 ---------------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 0246889999999999999999999998741 1224688999999
Q ss_pred HhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHhcc
Q 008818 494 DQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGD-HRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~ 549 (552)
...|++++|+.++++++++.+.. +.+++.+|.+|..+|+ +++|+.+|++|++++..
T Consensus 207 ~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976543 7899999999999995 69999999999998854
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1.4e-14 Score=126.49 Aligned_cols=148 Identities=14% Similarity=0.043 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP----------- 316 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------- 316 (552)
+......+......|++++|.+.+.......+.....+..+|.+++..|++++|+..|++++.+.|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 334555677778889999999988887777777788999999999999999999999999999999887
Q ss_pred -----HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 008818 317 -----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 391 (552)
Q Consensus 317 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 391 (552)
.++..+|.++. ..|++++|+.+|+++++.+|++..+++.+|.+|..+|++++|+
T Consensus 84 ~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 84 KNIEISCNLNLATCYN---------------------KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp HHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH
Confidence 67777777776 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHH
Q 008818 392 KCLEKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~la~~~l 416 (552)
.+|++++.++|++..++..++....
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 9999999999999888877766443
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=4.4e-14 Score=112.01 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHH
Q 008818 283 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 362 (552)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 362 (552)
..++.+|.++...|++++|+..|+++++.+|++..+|+.+|.++. ..|++++|+..|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA---------------------ENEKDGLAIIALNH 76 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999998 89999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 363 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 363 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+++++|++..++..+|.++...|++++|+..|+++++++|++.
T Consensus 77 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999999999999999864
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.55 E-value=8e-14 Score=122.06 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=128.3
Q ss_pred cCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDM 298 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~ 298 (552)
+..|++++|...++......+....++..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46789999999666555544477889999999999999999999999999984 445577899999999999999
Q ss_pred HHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC--
Q 008818 299 EQSAKCFQDLILK---DQNH----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-- 369 (552)
Q Consensus 299 ~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 369 (552)
++|+.++++++.+ .+++ ..++..+|.++. ..|++++|+..+++++.+.+.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVAL---------------------HFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999987 4433 234556666665 999999999999999976322
Q ss_pred ----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 370 ----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 370 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
...++..+|.++...|++++|+.++++++++....
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 23457899999999999999999999999875543
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=3.2e-13 Score=106.40 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888777777
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 381 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 381 (552)
. ..|++++|+..|+++++.+|++..++..++.+.
T Consensus 83 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 E---------------------FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred H---------------------HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 6 778888888888888888888888877777664
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.54 E-value=1.6e-13 Score=115.86 Aligned_cols=124 Identities=8% Similarity=0.109 Sum_probs=111.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 102 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 102 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 366 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 366 (552)
+|++++..+|.+..++..++.+.. +...|++++|+..+.++...
T Consensus 103 ~~~~a~~~~p~~~~~~~~~~~~~~-------------------~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 103 DYETVVKVKPHDKDAKMKYQECNK-------------------IVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-------------------HHHHHHHHHHHHcccchHHH
Confidence 999999999999988865555432 22789999999999887653
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=8.6e-14 Score=138.33 Aligned_cols=135 Identities=7% Similarity=0.130 Sum_probs=117.4
Q ss_pred cccccCCCccccccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008818 212 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 291 (552)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 291 (552)
.+..+|.. ++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus 8 ~~~~lg~~----~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 8 ELKTQAND----YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp TSSSSSSS----TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHH----HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455555 77888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHH----------
Q 008818 292 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL---------- 361 (552)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---------- 361 (552)
|..+|++++|+..|+++++++|++..++..++.+.. +...|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~-------------------~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK-------------------IVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH-------------------HHHHHHHCCC------CCSTTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------HHHHHHHHHHhccccccchhHhhhh
Confidence 999999999999999999999999999998888732 127899999999999
Q ss_pred -HHHhcCCC
Q 008818 362 -AALKADPK 369 (552)
Q Consensus 362 -~al~~~p~ 369 (552)
+++.+.|+
T Consensus 145 ~~al~~~~~ 153 (477)
T 1wao_1 145 IESMTIEDE 153 (477)
T ss_dssp TSSCCCCTT
T ss_pred hhhcccccc
Confidence 77777765
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.52 E-value=3.5e-13 Score=109.68 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=101.5
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHH
Q 008818 276 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 355 (552)
Q Consensus 276 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (552)
..+|.++..++.+|.++...|++++|+..|++++..+|++..++..+|.++. ..|++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------~~~~~~~ 61 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQ 61 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH---------------------HhcCHHH
Confidence 3567889999999999999999999999999999999999999999999988 8999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 356 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 356 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
|+..|+++++++|+++.+++.+|.++...|++++|+..|++++.++|+
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999999999999999999999999987
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=3.7e-15 Score=148.16 Aligned_cols=142 Identities=14% Similarity=0.102 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008818 246 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 325 (552)
Q Consensus 246 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 325 (552)
..+..+..+|.++...|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..++..+|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCChHHHHHHHH--------
Q 008818 326 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLE-------- 395 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-------- 395 (552)
+. ..|++++|+..|+++++++|++..++..++.+ +..+|++++|+..++
T Consensus 84 ~~---------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 142 (477)
T 1wao_1 84 NM---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 142 (477)
T ss_dssp HH---------------------HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTC
T ss_pred HH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhh
Confidence 88 89999999999999999999999999999998 889999999999999
Q ss_pred ---HHHhhCCCCcchH
Q 008818 396 ---KAAKLEPNCMSTR 408 (552)
Q Consensus 396 ---~al~~~p~~~~~~ 408 (552)
+++.+.|+....+
T Consensus 143 ~~~~al~~~~~~~~~~ 158 (477)
T 1wao_1 143 LDIESMTIEDEYSGPK 158 (477)
T ss_dssp CTTSSCCCCTTCCSCC
T ss_pred hhhhhccccccccccc
Confidence 8888888765443
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.52 E-value=1.4e-14 Score=137.40 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=96.3
Q ss_pred HhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHH
Q 008818 241 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 241 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~ 303 (552)
++..+..+..+..+|.+++..|++++|+..|++++.+.|++. .+++++|.+|..+|++++|+.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334456678899999999999999999999999999999876 489999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA-YY 382 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 382 (552)
+|+++++++|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.+ ..
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~---------------------~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKA---------------------ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988 89999999999999999999999999999998 45
Q ss_pred HcCChHHHHHHHHHHHhhCCCCc
Q 008818 383 LTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
..+..+++...|++++...|++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 56778899999999999999765
No 165
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-13 Score=109.47 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=110.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 278 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 278 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
.|.....++.+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~ 70 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT---------------------KLLEFQLAL 70 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT---------------------TTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---------------------HhccHHHHH
Confidence 45678899999999999999999999999999999999999999999887 899999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 008818 358 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l 416 (552)
..|+++++.+|.+..++..+|.++...|++++|+.+|++++..+|++..++..++....
T Consensus 71 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877766543
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.4e-13 Score=111.27 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=105.7
Q ss_pred hcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 242 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 242 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
...|.+...++.+|.++...|++++|+..|+++++.+|++ ..++..+|.+|...|++++|+..|++++..+|++..+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3456778889999999999999999999999999999987 8889999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008818 319 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 382 (552)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 382 (552)
++.+|.++. ..|++++|+.+|+++++++|++..++..++.+..
T Consensus 102 ~~~~a~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 102 LYRRSQALE---------------------KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 888888887 8889999999999999999998888888777653
No 167
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.51 E-value=9.1e-13 Score=119.78 Aligned_cols=242 Identities=10% Similarity=0.022 Sum_probs=167.8
Q ss_pred cCchhHHHHHHHHHHHHhcCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
+-.|+|..++....+ ..|.+ ......+.++|..+|++... .. .+....+...++..+. ++ |+.
T Consensus 24 fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~---a~~ 87 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK---NIE 87 (310)
T ss_dssp HTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT---CCH
T ss_pred HHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc---HHH
Confidence 346888999885543 33332 24556677888999988742 11 2222334444444442 32 899
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAY 381 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~ 381 (552)
.+++.+...+.....+..+|.++. ..|++++|+.++.+.+..+| .+..++..++.++
T Consensus 88 ~l~~l~~~~~~~~~~~~~la~i~~---------------------~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~ 146 (310)
T 3mv2_B 88 ELENLLKDKQNSPYELYLLATAQA---------------------ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVA 146 (310)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHH
Confidence 999988876666777778887777 89999999999999999987 8999999999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCC----CcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHHHhH
Q 008818 382 YLTGDHRSSGKCLEKAAKLEPN----CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 457 (552)
Q Consensus 382 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (552)
..+|+.+.|.+.++++.+.+|+ +......+ .-
T Consensus 147 L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L--------------------------------------------ae 182 (310)
T 3mv2_B 147 LLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL--------------------------------------------AE 182 (310)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--------------------------------------------HH
T ss_pred HHCCCHHHHHHHHHHHHhcCccccccchHHHHHH--------------------------------------------HH
Confidence 9999999999999999999883 11122222 11
Q ss_pred HHHHhchh--hHHHHHHHHHhhhcchhh--hhhhhHHHHHHhhhhHHHHHHHHHHHHHh----------CCCcHHHHHHH
Q 008818 458 AAVQKTHH--EVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKA----------DPKAAHIWANL 523 (552)
Q Consensus 458 ~~~~~~~~--~~~~A~~~~~~~l~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~l 523 (552)
+++....| ++.+|+..|++.....+. .....+. ++.++|++++|...++.+++. +|+++.++.++
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 22233333 677777777776554432 1222222 777888888888888877765 47788888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHhccc
Q 008818 524 ANAYYLTGDHRSSGKCLEKVLMVYCSS 550 (552)
Q Consensus 524 g~~~~~~g~~~~A~~~~~~al~l~~~~ 550 (552)
..+...+|+ +|.++++++.++.|..
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 877777776 7778888777776643
No 168
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.50 E-value=8.1e-14 Score=112.53 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=90.0
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL----------QSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 295 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 295 (552)
+.+.+++|+..++++++++|+++++|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008818 296 G-----------DMEQSAKCFQDLILKDQNHPAALINYA 323 (552)
Q Consensus 296 g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~ 323 (552)
| ++++|+.+|+++++++|++...+..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5 899999999999999999876654443
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.50 E-value=4e-13 Score=112.94 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhhccccccccccccc
Q 008818 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILK------------------DQNHPAALINYAALLLCKYGSVLAGAGANTGE 343 (552)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (552)
...+..+|..++..|++++|+..|.+++.+ +|....++.++|.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------- 74 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---------------- 74 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 567899999999999999999999999998 6666677888887777
Q ss_pred chhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-chHHHHHH
Q 008818 344 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAV 413 (552)
Q Consensus 344 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~ 413 (552)
..|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++. .....+..
T Consensus 75 -----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 75 -----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp -----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 44444433
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=1.1e-12 Score=103.38 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 360 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 360 (552)
.+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA---------------------KKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH---------------------hhccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999888 899999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 361 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 361 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
+++++.+|++..++..+|.++...|++++|+..|+++++.+|++...+..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887776654
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=7.8e-13 Score=106.29 Aligned_cols=112 Identities=16% Similarity=0.244 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYA 323 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~ 323 (552)
+++.+|.++...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 355666666666666667666666666666665 566666666666666666666666666666666 55566666
Q ss_pred HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008818 324 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 382 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 382 (552)
.++. ..|++++|+..|+++++.+|++..+...+..+..
T Consensus 84 ~~~~---------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 84 LSQY---------------------GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHH---------------------HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 6555 6666666666666666666666555544444433
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.48 E-value=5.5e-13 Score=107.29 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=104.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-------PA 317 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 317 (552)
|..+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999998876 66
Q ss_pred HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 008818 318 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 385 (552)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 385 (552)
++..+|.++. ..|++++|+..|+++++..| +...+..++.+....+
T Consensus 81 ~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 81 AYARIGNSYF---------------------KEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 7777777766 88999999999999999888 5778888887766544
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=2.7e-13 Score=105.78 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 278 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 278 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++. ..|++++|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~ 60 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY---------------------NLERYEEAV 60 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 35555555556666666666666666666666666655555555555555 555666666
Q ss_pred HHHHHHHhcCCC--cHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC
Q 008818 358 ECLLAALKADPK--AAHIWANLANAYYLT-GDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 358 ~~~~~al~~~p~--~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~ 404 (552)
..|+++++.+|. +..++..+|.++... |++++|+.++++++...|.+
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 666666666666 666666666666666 66666666666666666554
No 174
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.48 E-value=7.2e-13 Score=106.54 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=110.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHH
Q 008818 277 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 356 (552)
Q Consensus 277 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 356 (552)
.+|.+...+..+|.++...|++++|+..|++++..+|++..++..+|.++. ..|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A 65 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS---------------------KLGNYAGA 65 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------HhhchHHH
Confidence 345667899999999999999999999999999999999999999999888 89999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 008818 357 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 416 (552)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l 416 (552)
+..+++++..+|++..++..+|.++...|++++|+.+|++++..+|++..++..++....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888877766443
No 175
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.48 E-value=2.2e-12 Score=102.69 Aligned_cols=117 Identities=31% Similarity=0.502 Sum_probs=107.2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHH
Q 008818 278 DPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 356 (552)
Q Consensus 278 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 356 (552)
+|.. ..+++.+|.++...|++++|+..|++++...|++..++..++.++. ..|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A 62 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEA 62 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH---------------------HhCCHHHH
Confidence 4555 7889999999999999999999999999999999999999998888 89999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 008818 357 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 415 (552)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 415 (552)
+..|+++++..|.+..++..+|.++...|++++|+.+|++++..+|++..++..++...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887776543
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.47 E-value=2.8e-13 Score=105.65 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=100.3
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALIN 321 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 321 (552)
+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhhcccccccccccccchhHHHh-cCHHHHHHHHHHHHhcCCCc
Q 008818 322 YAALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALKADPKA 370 (552)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~ 370 (552)
++.++. .. |++++|++++++++...|.+
T Consensus 82 l~~~~~---------------------~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALR---------------------YIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHT---------------------TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHH---------------------HHhCCHHHHHHHHHHHhhcccCC
Confidence 999888 89 99999999999999998874
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.47 E-value=1.4e-12 Score=125.02 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 236 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 236 (552)
+..+..+|..++..|++++|+..|++++++.+... +...
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------------------------------~~~~ 261 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------------------------------AAAE 261 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------------------------HHSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------------------------------cccC
Confidence 45789999999999999999999999999743210 1112
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008818 237 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 316 (552)
Q Consensus 237 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 316 (552)
.......+|.+..++.++|.+|..+|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 262 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 34555678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008818 317 AALINYAALLL 327 (552)
Q Consensus 317 ~~~~~l~~~~~ 327 (552)
.++..++.++.
T Consensus 342 ~~~~~l~~~~~ 352 (370)
T 1ihg_A 342 AIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988887
No 178
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-12 Score=108.16 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=107.7
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhcccccccccccccchhHHHhcC
Q 008818 276 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 352 (552)
Q Consensus 276 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (552)
..+|.+...++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++. ..|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~ 80 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL---------------------KLED 80 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH---------------------HTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH---------------------HHcc
Confidence 3467889999999999999999999999999999999987 778888888887 8999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 008818 353 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 413 (552)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 413 (552)
+++|+..|+++++.+|++..+++.+|.++...|++++|+.+|++++.++|++..++..++.
T Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877665543
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.46 E-value=2.5e-13 Score=107.10 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=87.3
Q ss_pred chhHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 227 PEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
.|++++|+..|+++++. +|+++.++..+|.++..+|++++|+.+|+++++++|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57789999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHH
Q 008818 304 CFQDLILKDQNHPAALIN 321 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~ 321 (552)
.|++++...|+++.....
T Consensus 83 ~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHH
Confidence 999999999999876543
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.45 E-value=7.8e-13 Score=126.71 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLA----------------VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
.+..+..+|..++..|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356788999999999999999999999998 6777788899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 390 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 390 (552)
++|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.++..+++++++
T Consensus 302 ~~p~~~~a~~~lg~~~~---------------------~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQ---------------------GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888887 888999999999999999999999999999998888888777
Q ss_pred HHH
Q 008818 391 GKC 393 (552)
Q Consensus 391 ~~~ 393 (552)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 181
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=4.7e-12 Score=110.67 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=98.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhhc
Q 008818 258 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD------QNHPAALINYAALLLCKYG 331 (552)
Q Consensus 258 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~ 331 (552)
++..|++++|...++......+....++..+|.++...|++++|+..|++++.+. +....++..+|.++.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---- 77 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER---- 77 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH----
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH----
Confidence 3568999999996665555333678899999999999999999999999999843 333445666666665
Q ss_pred ccccccccccccchhHHHhcCHHHHHHHHHHHHhc---CC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008818 332 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKA---DP----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 402 (552)
..|++++|+..+++++.+ .+ ....++..+|.++...|++++|+.++++++.+.+
T Consensus 78 -----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 78 -----------------MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp -----------------HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -----------------HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988 33 2456799999999999999999999999987643
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.44 E-value=2.4e-12 Score=103.41 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHH
Q 008818 283 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 359 (552)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 359 (552)
..++.+|.++...|++++|+..|++++..+|++. .+++.+|.++. ..|++++|+..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~ 61 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY---------------------ATRNFQLAEAQ 61 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH---------------------HhccHHHHHHH
Confidence 3578899999999999999999999999999988 78888888888 89999999999
Q ss_pred HHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 360 LLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 360 ~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
|+++++.+|++ +.+++.+|.++..+|++++|+..|++++...|++..+....
T Consensus 62 ~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 99999999998 89999999999999999999999999999999987655443
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=4.8e-13 Score=108.02 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=64.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008818 259 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM----------EQSAKCFQDLILKDQNHPAALINYAALLL 327 (552)
Q Consensus 259 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 327 (552)
.+.+.|++|++.|+++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++..+|+++|.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999875 59999999999999999999999999998
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=5.1e-13 Score=126.69 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=81.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQA-----------------VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG 286 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 286 (552)
++..|++++|+..|++++...|++. .+++++|.+|..+|++++|+.+|++++.++|++..+++
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 268 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALF 268 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3455566999999999999999887 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc
Q 008818 287 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 366 (552)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 366 (552)
++|.+|..+|++++|+..|+++++++|++..++..++.+... ..+..+++...|.+++..
T Consensus 269 ~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~--------------------~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 269 RRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ--------------------EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999888877542 566788899999999999
Q ss_pred CCCcH
Q 008818 367 DPKAA 371 (552)
Q Consensus 367 ~p~~~ 371 (552)
.|.+.
T Consensus 329 ~p~~~ 333 (338)
T 2if4_A 329 KDEGG 333 (338)
T ss_dssp -----
T ss_pred CCCCC
Confidence 88764
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=3.7e-13 Score=106.10 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=77.4
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccc
Q 008818 260 KSGRLQSSISVLSSLLAV---DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 336 (552)
Q Consensus 260 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 336 (552)
.+|++++|+..|++++++ +|+++.+++.+|.+|..+|++++|+.+|+++++.+|+++.++..+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------- 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY--------- 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH---------
Confidence 357888888888888888 57778888888888888888888888888888888888888888888777
Q ss_pred cccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008818 337 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 380 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 380 (552)
..|++++|+..|++++...|+++.+......+
T Consensus 73 ------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 73 ------------NLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp ------------HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred ------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 78888888888888888888877665433333
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=7.1e-12 Score=123.80 Aligned_cols=140 Identities=11% Similarity=-0.022 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
|......|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556678888999999999999999999877642 3688999999999999999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHc
Q 008818 311 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYLT 384 (552)
Q Consensus 311 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 384 (552)
..+.......... +.. .+|.++...|++++|+.++++++... +....++..+|.+|...
T Consensus 84 ~~~~~~~~~~~~~-~~~--------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 84 YMMQFAKSKTVKV-LKT--------------LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp HHHTSCHHHHHHH-HHH--------------HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHH-HHH--------------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 7665544322110 000 12333347889999999999988753 23477899999999999
Q ss_pred CChHHHHHHHHHHHhhCC
Q 008818 385 GDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 385 ~~~~~A~~~~~~al~~~p 402 (552)
|+|++|+..+++++....
T Consensus 149 g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFK 166 (434)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHH
Confidence 999999999999886533
No 187
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.39 E-value=5.8e-10 Score=110.89 Aligned_cols=341 Identities=8% Similarity=-0.060 Sum_probs=197.7
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccC
Q 008818 138 KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 217 (552)
Q Consensus 138 ~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 217 (552)
.+..++..+++++...|. |+++.+...|++++...|.. ++ |...+......+
T Consensus 10 ~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~-------~L------W~~Y~~f~~~~~ 61 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNL-------DL------WMLYIEYVRKVS 61 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCH-------HH------HHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCH-------HH------HHHHHHHHHHhC
Confidence 366677777777766665 88888888888888754321 11 111111100011
Q ss_pred CCccccccCchhHHHHHHHHHHHHhc---CcchHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHH-HHHHH
Q 008818 218 DNSLDKELEPEELEEILSKLKESMQS---DTRQAVVWNTLGLILL----KSGRLQSSISVLSSLLAVDPNNCDC-IGNLG 289 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~----~~~~~~~A~~~~~~al~~~p~~~~~-~~~la 289 (552)
. ..+.....|+.++.. ++.+..+|......+. .+++.+.+...|++++..-+.+..- |....
T Consensus 62 ~----------~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~ 131 (493)
T 2uy1_A 62 Q----------KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFE 131 (493)
T ss_dssp --------------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred c----------hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHH
Confidence 1 113455667777653 5666777777776654 3466778888888888853333222 21111
Q ss_pred HHH-------------HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHH
Q 008818 290 IAY-------------FQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 355 (552)
Q Consensus 290 ~~~-------------~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (552)
..- ...+.+..|...|+.+....+. ....|..+...-... . ++. ...+..+.
T Consensus 132 ~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~--~----------~~~--~~~~~~~R 197 (493)
T 2uy1_A 132 NFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN--G----------MKL--GGRPHESR 197 (493)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC--T----------TCC--CHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC--C----------ccC--cchhhHHH
Confidence 111 1112333444445544443222 222333322221100 0 000 00011456
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHH
Q 008818 356 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 435 (552)
Q Consensus 356 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~ 435 (552)
....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+...+...+.. .+.. ..+. .
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~--~e~~------~~~~----~ 264 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV--MDEE------AVYG----D 264 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH--TTCT------HHHH----H
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh--cchh------HHHH----H
Confidence 778999999999999999999999999999999999999999999 9887665543332 1000 0011 1
Q ss_pred HHHHhhcCC------CCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcch-hhhhhhhHHHHHHhhh-hHHHHHHHHH
Q 008818 436 MASILREGD------PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-EECAGAGESAFLDQAS-AVNVAKECLL 507 (552)
Q Consensus 436 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~la~~~~~~~-~~~~A~~~~~ 507 (552)
+........ ........+|...+......+..+.|...|.++..+. ....|...|..-...+ +.+.|...|+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 111110000 0111223567888888777888888888888872221 1234444455555555 5888999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 008818 508 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 543 (552)
Q Consensus 508 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 543 (552)
.+++..|+.+..|...+......|+.+.|...|+++
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988888888887888778888888888777765
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.7e-11 Score=117.91 Aligned_cols=187 Identities=10% Similarity=-0.032 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 236 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 236 (552)
|......|..+...|++++|++.|.++++..|...... ...+.. ......
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~-------------------~~~~~~-----------~~~~~~ 53 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA-------------------AGASVD-----------DKRRNE 53 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS-------------------SSSSBC-----------SHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhH-------------------HHHHHH-----------HHHhhh
Confidence 45566778888899999999999999998755432111 000100 111111
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 237 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 237 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
...++..+|.+|...|++++|++++.+++...+... .+...+|.++...|++++|+.++++++.
T Consensus 54 ----------~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (434)
T 4b4t_Q 54 ----------QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE 123 (434)
T ss_dssp ----------HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 223567899999999999999999999998755432 3466788888899999999999999987
Q ss_pred hCC------CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc------CCCcHHHHHHHH
Q 008818 311 KDQ------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA------DPKAAHIWANLA 378 (552)
Q Consensus 311 ~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la 378 (552)
..+ .....+..+|.++. ..|++.+|+..+++++.. .+....++..+|
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 124 FAKREKRVFLKHSLSIKLATLHY---------------------QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES 182 (434)
T ss_dssp HHHHSSCCSSHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHHH---------------------HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 532 22445666676666 999999999999998875 344678999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCC
Q 008818 379 NAYYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 379 ~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
.+|..+|++++|..+|++++...+..
T Consensus 183 ~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 183 KVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999876543
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.39 E-value=2.6e-12 Score=107.62 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH----- 315 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 315 (552)
...++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 45688999999999999999999999999885532 2588999999999999999999999999876543
Q ss_pred -HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCChH
Q 008818 316 -PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHR 388 (552)
Q Consensus 316 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~ 388 (552)
..++..+|.++. ..|++++|+..++++++..+. ...++..+|.++...|+++
T Consensus 88 ~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 88 EAQSCYSLGNTYT---------------------LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 334455555554 999999999999999976322 3578899999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 008818 389 SSGKCLEKAAKLEPN 403 (552)
Q Consensus 389 ~A~~~~~~al~~~p~ 403 (552)
+|+.++++++++...
T Consensus 147 ~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 147 QAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987554
No 190
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=7.3e-12 Score=100.60 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHH
Q 008818 280 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 359 (552)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 359 (552)
..+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~ 60 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF---------------------EKGDYNKCREL 60 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HhccHHHHHHH
Confidence 346789999999999999999999999999999999999999999888 89999999999
Q ss_pred HHHHHhcCCCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 008818 360 LLAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 412 (552)
Q Consensus 360 ~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 412 (552)
|++++...|.+ ..++..+|.++...|++++|+.+|++++...| +......++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 99999998877 89999999999999999999999999999998 455554443
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.35 E-value=9e-12 Score=104.29 Aligned_cols=141 Identities=17% Similarity=0.027 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHH
Q 008818 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 236 (552)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 236 (552)
+.++..+|.++...|++++|+.+|+++++..+.. .+....+.++..+|.++. ..|++++|+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~ 71 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------GDKAAERIAYSNLGNAYI-----------FLGEFETASEY 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHH-----------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHH-----------HcCCHHHHHHH
Confidence 5688999999999999999999999999986542 222333455666666644 45566999999
Q ss_pred HHHHHhcCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 237 LKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 237 ~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
++++++..+.. ..++..+|.++...|++++|+.++++++.+.+ ....++..+|.++...|++++|+.+
T Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999876542 66889999999999999999999999998733 2256789999999999999999999
Q ss_pred HHHHHhhCCC
Q 008818 305 FQDLILKDQN 314 (552)
Q Consensus 305 ~~~al~~~p~ 314 (552)
+++++++...
T Consensus 152 ~~~a~~~~~~ 161 (164)
T 3ro3_A 152 AEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.27 E-value=1.1e-08 Score=101.74 Aligned_cols=332 Identities=12% Similarity=0.004 Sum_probs=198.9
Q ss_pred hhhhhhhhhCCCCccccccCCCccchhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-chHHHHHHHHHHHHH
Q 008818 109 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ-PLKAVSSYEKAEEIL 187 (552)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~ 187 (552)
..|+++++..|. +.++.+...|++++...| +.+.|........+.+. .+.....|+.++...
T Consensus 16 ~vyer~l~~~P~----------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 16 AIMEHARRLYMS----------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp HHHHHHHHHHHT----------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred HHHHHHHHHCCC----------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc
Confidence 678888888776 458889999999999888 88899888888777763 456778889888752
Q ss_pred hhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCcchHH------------------
Q 008818 188 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV------------------ 249 (552)
Q Consensus 188 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------ 249 (552)
..+ ...+ .+|...+..+... ....++.+.+...|++++..-+.+..
T Consensus 79 g~d---~~s~------~iW~~Yi~f~~~~-------~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 79 ENY---WDSY------GLYKEYIEEEGKI-------EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITG 142 (493)
T ss_dssp TTC---TTCH------HHHHHHHHHTSSC-------SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred CCC---cccH------HHHHHHHHHHHhc-------hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccH
Confidence 110 0011 1111111111000 01246678888888888774221111
Q ss_pred -------------------------------HHHHHHHHHHHcCC---------HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008818 250 -------------------------------VWNTLGLILLKSGR---------LQSSISVLSSLLAVDPNNCDCIGNLG 289 (552)
Q Consensus 250 -------------------------------~~~~la~~~~~~~~---------~~~A~~~~~~al~~~p~~~~~~~~la 289 (552)
.|..... +..++ .+.....|++++...|..+..|...+
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~--~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya 220 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID--LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYS 220 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH--HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1211111 11222 34567899999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHH---HH---H
Q 008818 290 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL---LA---A 363 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~---~~---a 363 (552)
..+...|+.++|...|++++.. |.+...|...+.... +... ++.....+ .. .
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e---------------~~~~------~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD---------------EEAV------YGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT---------------CTHH------HHHHHHHTC--------
T ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc---------------hhHH------HHHHHHHHHhhccchhh
Confidence 9999999999999999999999 998877765544311 0000 11111110 00 0
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhc
Q 008818 364 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC-MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 442 (552)
Q Consensus 364 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (552)
....+....+|...+....+.+..+.|...|+++ . .|.. ...+...+.....
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~------------------------- 331 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYY------------------------- 331 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHH-------------------------
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHH-------------------------
Confidence 0111223466777777777778888888888888 3 3432 2222221111110
Q ss_pred CCCCCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcch--hhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Q 008818 443 GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW 520 (552)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 520 (552)
..++.+.|...+..++... ....|...+......|+.+.|...|+++ +.....|
T Consensus 332 --------------------~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw 387 (493)
T 2uy1_A 332 --------------------ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMW 387 (493)
T ss_dssp --------------------HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHH
T ss_pred --------------------HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHH
Confidence 0112344444444443321 1223334444556677777788777776 3457777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 521 ANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 521 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
......-...|+.+.+...++++++.+.
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 7777777778888888888888887554
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.25 E-value=8.2e-11 Score=92.17 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.+|...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q 008818 311 KDQN 314 (552)
Q Consensus 311 ~~p~ 314 (552)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 8874
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=9.8e-12 Score=96.72 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH------PAALI 320 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 320 (552)
++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 77777
Q ss_pred HHHHHHH
Q 008818 321 NYAALLL 327 (552)
Q Consensus 321 ~l~~~~~ 327 (552)
.++.++.
T Consensus 83 ~~~~~~~ 89 (111)
T 2l6j_A 83 RLELAQG 89 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777776
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.20 E-value=1e-10 Score=91.65 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccch
Q 008818 266 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 345 (552)
Q Consensus 266 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (552)
+|+..|+++++.+|+++.+++.+|.+|...|++++|+..|++++.++|++..++..+|.++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~------------------ 64 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ------------------ 64 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH------------------
Confidence 46677777777777777777777777777777777777777777777777777777777666
Q ss_pred hHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 346 CLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
..|++++|+..|++++++.|.
T Consensus 65 ---~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 65 ---GQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp ---HHTCHHHHHHHHHHHHHHHHH
T ss_pred ---HcCCHHHHHHHHHHHHHhccc
Confidence 677777777777777776654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.20 E-value=2.8e-10 Score=84.68 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.3
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 245 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 245 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
|.++.+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+.+|++++.++|++..++..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 008818 325 LLL 327 (552)
Q Consensus 325 ~~~ 327 (552)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.9e-11 Score=95.07 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 360 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 360 (552)
+...+..+|.++...|++++|+..|+++++++|+++.++.++|.++. ..|++++|+..|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI---------------------KLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HhcCHHHHHHHH
Confidence 46789999999999999999999999999999999999999999988 899999999999
Q ss_pred HHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 008818 361 LAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEK 396 (552)
Q Consensus 361 ~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 396 (552)
+++++++|++ ..++..+|.++..+|+++.|+..+++
T Consensus 62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999998 89999999999999999888776654
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.13 E-value=5.4e-10 Score=83.06 Aligned_cols=85 Identities=29% Similarity=0.397 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHH
Q 008818 280 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 359 (552)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 359 (552)
.+..+++.+|.++...|++++|+.+|++++..+|++..++..+|.++. ..|++++|+..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~ 65 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HHhhHHHHHHH
Confidence 356788899999999999999999999999999999988888888887 88999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcC
Q 008818 360 LLAALKADPKAAHIWANLANAYYLTG 385 (552)
Q Consensus 360 ~~~al~~~p~~~~~~~~la~~~~~~~ 385 (552)
|+++++.+|++..++..+|.++...|
T Consensus 66 ~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999887764
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.11 E-value=4.9e-10 Score=85.03 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=66.9
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|...|++++|+..|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 478999999999999999999999999999999999999999999999999999999999999999998664
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.09 E-value=3.4e-09 Score=85.68 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=104.8
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSA 302 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 302 (552)
.+++++|+..|+++.+..... +. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 468899999999999887443 44 999999999999999999999987 689999999999999 89999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008818 303 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 378 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 378 (552)
.+|+++.+. .++.+++++|.++..-.+ -.+++++|+.+|+++.+.. ++.+...++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g-----------------~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKG-----------------VVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCC-----------------CCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999986 689999999999882100 1789999999999999874 455555544
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.05 E-value=3.8e-10 Score=85.55 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008818 252 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCD-CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 330 (552)
Q Consensus 252 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 330 (552)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.+|...|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---------
Confidence 56889999999999999999999999999999 99999999999999999999999999999999887632
Q ss_pred cccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCc
Q 008818 331 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 370 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (552)
+.+.+++..|++++..+|++
T Consensus 75 --------------------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 --------------------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp --------------------HHHHHHHHHHCCTTHHHHCC
T ss_pred --------------------HHHHHHHHHHHHHhccCccc
Confidence 22566777777777666553
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.04 E-value=1.2e-09 Score=82.81 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH
Q 008818 278 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 357 (552)
Q Consensus 278 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 357 (552)
+|+++.+++.+|.+|...|++++|+..|+++++++|++..++..+|.++. ..|++++|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~ 61 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE---------------------RLDRTDDAI 61 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcCCHHHHH
Confidence 56777777777777777777777777777777777777777777777666 677777777
Q ss_pred HHHHHHHhcCCC
Q 008818 358 ECLLAALKADPK 369 (552)
Q Consensus 358 ~~~~~al~~~p~ 369 (552)
..|++++++.|.
T Consensus 62 ~~~~~al~l~~~ 73 (100)
T 3ma5_A 62 DTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 777777766543
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.00 E-value=7.1e-10 Score=84.00 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHH
Q 008818 286 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 364 (552)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 364 (552)
+.+|.++...|++++|+..|+++++.+|++.. ++..+|.++. ..|++++|+..|++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR---------------------KLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 56788888888888888888888888888888 8888888877 7888888888888888
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 365 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 365 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
+++|++..++.. +.+.+++..|++++..+|++.
T Consensus 63 ~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 63 ELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred hcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 888888777643 567777888888777777654
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.98 E-value=3.6e-08 Score=87.17 Aligned_cols=186 Identities=17% Similarity=0.154 Sum_probs=130.4
Q ss_pred hHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---------------------CchHHHHHHHHHHHHHhhcccc
Q 008818 135 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG---------------------QPLKAVSSYEKAEEILLRCEAD 193 (552)
Q Consensus 135 ~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~ 193 (552)
-.+.+-.....++..+..+|++...+...|..|..-+ ++..|...|.++.+..
T Consensus 44 v~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~------ 117 (301)
T 3u64_A 44 VAQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA------ 117 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH------
Confidence 3455666677788888899999887777776665321 2345566666665431
Q ss_pred ccchhHHHHHHHhhhhcccccccCCCccccccCch---hHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-----cC---
Q 008818 194 IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE---ELEEILSKLKESMQSDTRQAVVWNTLGLILLK-----SG--- 262 (552)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~--- 262 (552)
...+...+...+. .+..+ +++++ .-+.+|+++++++..|.+... .|
T Consensus 118 -----~raL~~~~~~~~~------------~~~~~~~~~~~~~------l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~ 174 (301)
T 3u64_A 118 -----LSSLETAYPGFTR------------EVFSGDEQRLHKV------LSRCTRVDVGTLYWVGTGYVAAFALTPLGSA 174 (301)
T ss_dssp -----HHHHHHHSTTHHH------------HHTSSCHHHHHHH------HTTCCGGGHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred -----HHHHHHhCccHHH------------HHHhcchhhHHHH------HHHcCccccHHHHHHHHHHHHHHhcCCCChH
Confidence 0001111111110 01122 22222 334578888888777766543 13
Q ss_pred ---CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhhc
Q 008818 263 ---RLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQS-----GDMEQSAKCFQDLILKDQNH-PAALINYAALLLCKYG 331 (552)
Q Consensus 263 ---~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~ 331 (552)
....|...++++++++|+ +..+|..+|.+|... |+.++|.++|+++++++|+. ...++.+|..+..
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~--- 251 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI--- 251 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT---
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH---
Confidence 357899999999999999 677999999999995 99999999999999999975 9999999988761
Q ss_pred ccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC
Q 008818 332 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 369 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 369 (552)
..|++++|...+++++..+|.
T Consensus 252 -----------------~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 252 -----------------PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp -----------------TTTCHHHHHHHHHHHHHCCGG
T ss_pred -----------------hcCCHHHHHHHHHHHHcCCCC
Confidence 358999999999999998776
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.98 E-value=1e-08 Score=82.81 Aligned_cols=115 Identities=11% Similarity=-0.002 Sum_probs=100.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccccccccc
Q 008818 262 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 341 (552)
Q Consensus 262 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (552)
+++++|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.++..-.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g---------- 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY---------- 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS----------
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC----------
Confidence 468999999999998864 4444 999999999999999999999986 789999999999872100
Q ss_pred ccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhC
Q 008818 342 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 342 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~ 401 (552)
..+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+..
T Consensus 73 -------~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 73 -------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp -------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred -------CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 178999999999999986 679999999999999 999999999999999874
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.98 E-value=2.7e-09 Score=105.06 Aligned_cols=127 Identities=10% Similarity=0.015 Sum_probs=105.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA--- 317 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--- 317 (552)
.+..+..+|+|++|+..|++++++ .|++ ...+.+||.+|..+|+|++|+.++++++.+ .|+++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 445577899999999999999986 3444 567899999999999999999999999975 456654
Q ss_pred HHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc-----CCC---cHHHHHHHHHHHHHcCChHH
Q 008818 318 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPK---AAHIWANLANAYYLTGDHRS 389 (552)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~ 389 (552)
.+.++|.+|. .+|++++|+..|++++++ .|+ .......++.++..++.+++
T Consensus 395 ~l~nLa~~~~---------------------~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 395 AVMRAGLTNW---------------------HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777666 999999999999999975 344 45667889999999999999
Q ss_pred HHHHHHHHHhhC
Q 008818 390 SGKCLEKAAKLE 401 (552)
Q Consensus 390 A~~~~~~al~~~ 401 (552)
|...|+++.+..
T Consensus 454 ae~~~~~~~~~~ 465 (490)
T 3n71_A 454 NEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.97 E-value=1.8e-08 Score=93.26 Aligned_cols=144 Identities=11% Similarity=0.074 Sum_probs=111.1
Q ss_pred HHhcCcchHHH--HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----H---HHH-HHHH
Q 008818 240 SMQSDTRQAVV--WNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM----E---QSA-KCFQ 306 (552)
Q Consensus 240 al~~~p~~~~~--~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~---~A~-~~~~ 306 (552)
+....|.+..+ ++..|..++..+. +.+|+.+|+++++++|+++.++..++.+|.....+ . .++ ..+.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 33445555444 3456777766554 57899999999999999999999999888632111 1 111 1222
Q ss_pred H--HHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 008818 307 D--LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 384 (552)
Q Consensus 307 ~--al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 384 (552)
. ++..+|.++.++..++..+. ..|++++|+..+++++.++|+ ...|..+|.++...
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l---------------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSAL---------------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK 323 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT
T ss_pred HHHhcccCCcCHHHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC
Confidence 2 22557888888888887776 789999999999999999975 77889999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCc
Q 008818 385 GDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 385 ~~~~~A~~~~~~al~~~p~~~ 405 (552)
|++++|++.|++|+.++|...
T Consensus 324 G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 324 GMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHSCSHH
T ss_pred CCHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999875
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=1.3e-08 Score=81.04 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=92.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDM 298 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~ 298 (552)
.+..+....+.+.|.+.+..++.+.++.+++|.++.+.+ +.++++..++.+++.+ | +..++++++|..++++|+|
T Consensus 8 ~l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 456778899999999999989999999999999999998 6779999999999998 7 5689999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 299 EQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 299 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
++|+++++++++++|++..+......+-
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999998876554443
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.86 E-value=8.8e-09 Score=101.47 Aligned_cols=135 Identities=10% Similarity=0.023 Sum_probs=109.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHh
Q 008818 163 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 242 (552)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 242 (552)
.+..+..+|+|++|+..|++++++... ...++....+..+.+++.+|..+ |+|++|+.+++++++
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~----~lg~~Hp~~a~~~~nLa~~y~~~-----------g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEP----VFADTNLYVLRLLSIASEVLSYL-----------QAYEEASHYARRMVD 379 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTT----TBCTTSHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHH
Confidence 445577899999999999999997422 23455566677888888885544 555999999999986
Q ss_pred c--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 008818 243 S--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNNC---DCIGNLGIAYFQSGDMEQSAKCFQ 306 (552)
Q Consensus 243 ~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~ 306 (552)
. +|.-+..+++||.+|..+|++++|+..|++|+++ .|+++ .....++.++..++.+++|...|.
T Consensus 380 i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4566778999999999999999999999999986 55554 566789999999999999999999
Q ss_pred HHHhhC
Q 008818 307 DLILKD 312 (552)
Q Consensus 307 ~al~~~ 312 (552)
++.+..
T Consensus 460 ~~~~~~ 465 (490)
T 3n71_A 460 KMREAA 465 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.85 E-value=6.9e-08 Score=85.40 Aligned_cols=111 Identities=8% Similarity=0.055 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhcccccccccccccc
Q 008818 278 DPNNCDCIGNLGIAYFQ-----SG------DMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEG 344 (552)
Q Consensus 278 ~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (552)
+|++++.++..|.+... .| ....|...++++++++|+ +..+|..+|.+|...-.
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp------------- 214 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPE------------- 214 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCT-------------
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCC-------------
Confidence 45566777777766643 13 357899999999999999 56689999988872100
Q ss_pred hhHHHhcCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCC
Q 008818 345 ACLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYL-TGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 345 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~ 404 (552)
.--|+.++|..+|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 215 ---~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 215 ---SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp ---TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred ---ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 01599999999999999999975 9999999999988 499999999999999998874
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.84 E-value=5.3e-08 Score=90.12 Aligned_cols=125 Identities=13% Similarity=0.070 Sum_probs=100.5
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCH----HHHH----HHHH--HHHhcCCCCHHHHHHHHHHHHHc
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL----QSSI----SVLS--SLLAVDPNNCDCIGNLGIAYFQS 295 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----~~A~----~~~~--~al~~~p~~~~~~~~la~~~~~~ 295 (552)
..+++.+|+.+|+++++.+|+++.++..++.+|.....+ .... ..++ .++..+|.++.++..++.++...
T Consensus 211 ~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 346679999999999999999999999888888632111 1111 1222 23456799999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 008818 296 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 372 (552)
Q Consensus 296 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (552)
|++++|+..+++++.++|+ ..++..+|.++. ..|++++|++.|.+++.++|....
T Consensus 291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~---------------------~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYE---------------------MKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999974 667777777777 899999999999999999998653
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.81 E-value=3.5e-08 Score=72.87 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=68.4
Q ss_pred CcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008818 244 DTRQAVVWNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 316 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 316 (552)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999987666 79999999999999999999999999999999999999999999999999843
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.69 E-value=2e-07 Score=68.75 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 008818 312 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 391 (552)
Q Consensus 312 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 391 (552)
+|+++..+..+|.+++... .....++|...++++++.+|+++.++..+|..++..|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~------------------~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLH------------------KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTT------------------TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc------------------CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6889999999999887210 1112799999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 008818 392 KCLEKAAKLEPNC 404 (552)
Q Consensus 392 ~~~~~al~~~p~~ 404 (552)
.+|+++++.+|..
T Consensus 64 ~~w~~~l~~~p~~ 76 (93)
T 3bee_A 64 DTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHTCCCTT
T ss_pred HHHHHHHhhCCCC
Confidence 9999999999983
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=2.9e-07 Score=73.38 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhc---CHHHHHHHHHHHHhcC-C-CcH
Q 008818 297 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKECLLAALKAD-P-KAA 371 (552)
Q Consensus 297 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~ 371 (552)
....+.+.|.+.+..++.+.++.++++.++. +.+ +.++++..++.+++.+ | ++.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv---------------------~S~~~~~~~~gI~lLe~ll~~~~p~~~r 71 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV---------------------RSKYNDDIRKGIVLLEELLPKGSKEEQR 71 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------------TCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHH---------------------cCCCHHHHHHHHHHHHHHHhcCCccchH
Confidence 3567788888888888999999999999998 544 7789999999999998 7 578
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
++++++|..++++|+|++|+++++++++++|++..+....
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999999999999998776554
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.60 E-value=4.5e-07 Score=68.85 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVD-------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 320 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 320 (552)
+.-.+.+|..++..|+|..|+..|++|++.. +....++..+|.++..+|+++.|+..+++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4567899999999999999999999999863 345789999999999999999999999999999999999887
Q ss_pred HHH
Q 008818 321 NYA 323 (552)
Q Consensus 321 ~l~ 323 (552)
++.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 776
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.57 E-value=3.1e-07 Score=88.93 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=79.8
Q ss_pred CchhHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---CHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPN---NCDCIGNLG 289 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~la 289 (552)
..|+|++|+..+++++++ +|.-..++.++|.+|..+|+|++|+.++++++.+ .|+ -...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999999874 3445678899999999999999999999999986 344 456799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 008818 290 IAYFQSGDMEQSAKCFQDLILK-----DQNHPAAL 319 (552)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 319 (552)
.+|..+|++++|+..|++++++ .|+++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999975 57777554
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.41 E-value=8.6e-07 Score=86.02 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=80.9
Q ss_pred ccCchhHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGN 287 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~ 287 (552)
+..+|++++|+..++++++. +|.-..++.++|.+|..+|+|++|+.++++++.+ .|++ ...+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34568889999999999975 3445678899999999999999999999999976 3444 567899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 008818 288 LGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAAL 319 (552)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 319 (552)
||.+|..+|++++|+..|++++++ .|+++...
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 999999999999999999999975 57777654
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.40 E-value=3.6e-06 Score=63.76 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCH
Q 008818 281 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 353 (552)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (552)
++.-++.+|..++..|+|..|+.+|+.+++.. +.....+..+|.++. +.|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~---------------------~~g~~ 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY---------------------QQGDL 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH---------------------HTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH---------------------HccCH
Confidence 45678899999999999999999999999863 234566777777777 99999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHH
Q 008818 354 NVAKECLLAALKADPKAAHIWANLA 378 (552)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~la 378 (552)
+.|+..+++++++.|++..+..+++
T Consensus 63 ~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 9999999999999999999988877
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.39 E-value=1.5e-06 Score=84.44 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=84.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---H
Q 008818 255 GLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA---A 318 (552)
Q Consensus 255 a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~ 318 (552)
..-+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|+++. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999976 3444 467899999999999999999999999965 355654 3
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHH
Q 008818 319 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKAA---HIWANLANAYYL 383 (552)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~ 383 (552)
++++|.++. ..|++++|+..|++++++ .|+++ .++.+|+.+...
T Consensus 374 l~nLa~~~~---------------------~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQL---------------------HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 666666666 999999999999999875 45544 444556666544
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.39 E-value=0.0001 Score=73.22 Aligned_cols=188 Identities=8% Similarity=0.075 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHH
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 238 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 238 (552)
.+..+-..+.+.|+.++|+.+|+++.+..- .|+...+..+....+. .+.. ......+++++|...|+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-------~pd~~tyn~Li~~c~~----~~~~--~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGV-------QLSQYHYNVLLYVCSL----AEAA--TESSPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTC-------CCCHHHHHHHHHHHTT----CCCC--SSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------CCCHhHHHHHHHHHHh----CCch--hhhhhcchHHHHHHHHH
Confidence 455666788899999999999999987521 3333322222222221 1111 11346688999999999
Q ss_pred HHHhcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Q 008818 239 ESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ-NH 315 (552)
Q Consensus 239 ~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~ 315 (552)
++....- -+..+|..+...|.+.|++++|...|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+..- -+
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 9876532 246789999999999999999999999987753 22578899999999999999999999999987532 24
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Q 008818 316 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAY 381 (552)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 381 (552)
...+..+...+. +.|+.++|.+++++..+. .|+ ...+..+-..+
T Consensus 175 ~~ty~~Li~~~~---------------------~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 175 EPELAALLKVSM---------------------DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------------------hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 556666666666 899999999999988764 444 44444444443
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.35 E-value=2.6e-06 Score=82.50 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=77.0
Q ss_pred HHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHHH
Q 008818 259 LKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA---ALINY 322 (552)
Q Consensus 259 ~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l 322 (552)
...|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|+++. .+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3468999999999999986 4555 457889999999999999999999999975 456654 46677
Q ss_pred HHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhc-----CCCcHHHH
Q 008818 323 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKAAHIW 374 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 374 (552)
|.++. .+|++++|+..|++++++ .|+++.+.
T Consensus 389 a~~~~---------------------~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 389 GRLYM---------------------GLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHH---------------------hccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 77776 999999999999999886 45655443
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.30 E-value=7.7e-06 Score=62.59 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 008818 228 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS---SISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDMEQSA 302 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 302 (552)
..+..+...|.+.+..++....+.+++|.++.+..+... ++..++..+..+ | ...++++.+|..++++|+|++|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 445777888888888788888999999999999987776 999999999887 5 56789999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 008818 303 KCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 303 ~~~~~al~~~p~~~~~~~~l~~ 324 (552)
.+++.+++..|++..+......
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999988754433
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.25 E-value=0.00018 Score=71.45 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=123.6
Q ss_pred cCchhHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q 008818 225 LEPEELEEILSKLKESMQSD-TRQAVVWNTLGLILLKSG---------RLQSSISVLSSLLAVDP-NNCDCIGNLGIAYF 293 (552)
Q Consensus 225 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 293 (552)
-+.|++++|+..|+++.+.. .-+...|..+-.++...+ ..++|.+.|++.....- -+...|..+...|.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 36678899999999998753 123566777766666544 36889999998876532 25788999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-cH
Q 008818 294 QSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-AA 371 (552)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 371 (552)
+.|++++|...|++..+.. .-+...|..+...+. +.|+.++|.++|++..+..-. +.
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~---------------------~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC---------------------RKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCCCH
Confidence 9999999999999988753 225566666666665 899999999999999875322 57
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKLE 401 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 401 (552)
..|..+-.+|.+.|+.++|.++|++..+..
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999999987653
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.07 E-value=5.9e-05 Score=57.70 Aligned_cols=99 Identities=15% Similarity=0.051 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcC-C-CcHH
Q 008818 295 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-P-KAAH 372 (552)
Q Consensus 295 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~ 372 (552)
......+...|.+.+..++....+.+.++.++.... ...+..+++..++..++.+ | ..-+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~------------------~~~d~~~GI~lLe~l~~~~~p~~~Rd 75 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR------------------YNDDIRKGIVLLEELLPKGSKEEQRD 75 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS------------------SHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC------------------CHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 344566778888888888888999999999988210 2234455999999999987 5 5778
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 008818 373 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 411 (552)
Q Consensus 373 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (552)
.++.+|..++++|+|++|+.+++.+++..|++..+....
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999999999997766433
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.89 E-value=0.00027 Score=55.16 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=80.8
Q ss_pred cCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhcccccccccccccchhHHH
Q 008818 277 VDPNNCDCIGNLGIAYFQSGDM------EQSAKCFQDLILKDQNHP-AALINYAALLLCKYGSVLAGAGANTGEGACLDQ 349 (552)
Q Consensus 277 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
+.|++++.|..........|+. ++-++.|++++..-|... ..|..+..++... + .+..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrY--------------A-~~~e 72 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRF--------------A-ELKA 72 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHH--------------H-HHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH--------------H-HHHH
Confidence 4567777777777777766776 677777777776554321 1122222222210 1 1125
Q ss_pred hcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 008818 350 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 417 (552)
Q Consensus 350 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~ 417 (552)
.++.++|.+.|+.+++++...+.+|...|..-.++|+...|.+.+.+++.+.|.... ....++..+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~nl~ 139 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALRNLN 139 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHHhhh
Confidence 678888888888888887778888888888888888888888888888888876433 2334444444
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.88 E-value=0.00017 Score=56.29 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=74.8
Q ss_pred hCCCChHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCcccccc
Q 008818 152 KMPKNAHAHFLLGLMYQRLGQP------LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 225 (552)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (552)
..|++++.|..........|+. ++-++.|++|+...|-.. ...+..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----~~~wrr------------------------ 59 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----YGQNES------------------------ 59 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----GTTCHH------------------------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----cccHHH------------------------
Confidence 5799999999999999999999 888999999998755321 112222
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (552)
+...|...|.. ...++.++|.+.|+.++++....+.+|...|..-.++|+...|.+.+
T Consensus 60 ---------------------YI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkIL 117 (161)
T 4h7y_A 60 ---------------------FARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLL 117 (161)
T ss_dssp ---------------------HHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 23344444433 33356666666666666655555666666666666666666666666
Q ss_pred HHHHhhCCCCHHH
Q 008818 306 QDLILKDQNHPAA 318 (552)
Q Consensus 306 ~~al~~~p~~~~~ 318 (552)
.+++.+.|.....
T Consensus 118 g~AiG~~~k~~~~ 130 (161)
T 4h7y_A 118 QKAVERGAVPLEM 130 (161)
T ss_dssp HHHHHTTCBCHHH
T ss_pred HHHhccCCCcHHH
Confidence 6666666655443
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.75 E-value=0.00061 Score=52.20 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=80.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDME 299 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~ 299 (552)
.+...++....+.|.+-+ ...-.+.+.+++|.++.+..+. .+++..++..++.+|. ..++++.+|..++++|+|+
T Consensus 17 ~~~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~ 95 (134)
T 3o48_A 17 PLYPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS 95 (134)
T ss_dssp CCCHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH
T ss_pred CCCHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHH
Confidence 345666677777776654 2333468899999999988755 4799999999998884 5789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 300 QSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
+|+++.+.+++..|++..+......
T Consensus 96 ~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 96 MAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 9999999999999999988654443
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.74 E-value=0.0008 Score=52.29 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=81.3
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDME 299 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 299 (552)
.+...++......|.+-.. +.-...+.+++|.++.+..+. .+++..++..+...| ...++++.+|..++++|+|+
T Consensus 16 ~l~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~ 94 (144)
T 1y8m_A 16 PLYPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS 94 (144)
T ss_dssp CCCHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHH
T ss_pred CCCHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHH
Confidence 3456666777777766533 345578999999999998765 479999999999888 46789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHH
Q 008818 300 QSAKCFQDLILKDQNHPAALINYAA 324 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~~~~~~~l~~ 324 (552)
+|+++.+.+++..|++..+......
T Consensus 95 ~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 95 MAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999999999888654433
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.53 E-value=0.00028 Score=56.55 Aligned_cols=102 Identities=9% Similarity=0.008 Sum_probs=76.6
Q ss_pred ccCchhHHHHHHHHHHHHhcCcch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C---------
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQ---------AVVWNTLGLILLKSGRLQSSISVLSSLLAVD------P--------- 279 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p--------- 279 (552)
.+..|.|+.|+.....++....++ ..++..+|.+++..++|..|...|++++... +
T Consensus 30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 346677899998888876654333 3478899999999999999999999987651 1
Q ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 280 ----------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 280 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
.+.++.+.++.||..++++++|+..++.+- .....+.....||.+|
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 112688999999999999999999986532 2334566666666654
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.45 E-value=0.00092 Score=53.57 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD---QNHP 316 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~ 316 (552)
.+++.-...++..|.|+.|+-....++.+..++ ..++..+|.+++..|+|..|...|++++... +...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355666777889999999999999877764332 3478999999999999999999999998653 2222
Q ss_pred HHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008818 317 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 396 (552)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 396 (552)
.....++..- ........ +.+.++.+.++.||..+|++++|+..++.
T Consensus 101 s~~~~~~~~s--------------------------------s~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSA--------------------------------STPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------------------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccC--------------------------------CCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 2111111000 00001112 34577778888888888888888887655
Q ss_pred H
Q 008818 397 A 397 (552)
Q Consensus 397 a 397 (552)
+
T Consensus 148 I 148 (167)
T 3ffl_A 148 I 148 (167)
T ss_dssp S
T ss_pred C
Confidence 3
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.25 E-value=0.0015 Score=50.05 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008818 227 PEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 292 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 292 (552)
..+..+++..++..++.+| ..-+.++.+|..+.+.|+|++|..+.+.+++..|++..+......+-
T Consensus 56 ~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 56 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4567899999999999998 45789999999999999999999999999999999988876655443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.16 E-value=0.014 Score=45.41 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCChHHHH
Q 008818 313 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-AAHIWANLANAYYLTGDHRSSG 391 (552)
Q Consensus 313 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~ 391 (552)
.-...+.++++.++.... ...+..+++..++..++..|. .-+.++.+|..++++|+|++|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~------------------~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKST------------------DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp TSCHHHHHHHHHHHHHSS------------------SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCC------------------CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH
Confidence 446778888888887321 244567899999999998884 6789999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHH
Q 008818 392 KCLEKAAKLEPNCMSTRYA 410 (552)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~ 410 (552)
++.+.+++..|++..+...
T Consensus 98 ~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 98 RYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHH
Confidence 9999999999999766543
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.07 E-value=0.036 Score=52.25 Aligned_cols=196 Identities=9% Similarity=0.049 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHH
Q 008818 158 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 237 (552)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 237 (552)
.+.+.||.+|...|++++-.+++.......+.- ...... .+-..+...+.... +..+.-++.+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~kak~~---k~v~~l~~~~~~~~----------~~~~~~~~~~ 82 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI----SKAKAA---KLVRSLVDMFLDMD----------AGTGIEVQLC 82 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS----CHHHHH---HHHHHHHHHHTTSC----------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----chHHHH---HHHHHHHHHHhcCC----------CcHHHHHHHH
Confidence 467889999999999999988888765543221 111111 11111111111111 2235556666
Q ss_pred HHHHhcCcchHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHH
Q 008818 238 KESMQSDTRQAVV------WNTLGLILLKSGRLQSSISVLSSLLAVDP--N----NCDCIGNLGIAYFQSGDMEQSAKCF 305 (552)
Q Consensus 238 ~~al~~~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~ 305 (552)
..+++-..+.-.. -..+|..|+..|+|.+|.+.+.+.+.... + -.+++.....+|...+++.++...+
T Consensus 83 ~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l 162 (394)
T 3txn_A 83 KDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAAL 162 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6666533322222 23789999999999999999988876422 1 2456777888999999999999999
Q ss_pred HHHHhhC---CCCHHHHHHHHHHHHHhhcccccccccccccchhHH-HhcCHHHHHHHHHHHHhcCCC-----cHHHHHH
Q 008818 306 QDLILKD---QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD-QASAVNVAKECLLAALKADPK-----AAHIWAN 376 (552)
Q Consensus 306 ~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~-----~~~~~~~ 376 (552)
.++.... +.++.. .|.+..+ -|..+. ..++|..|...|-+++..... ...+...
T Consensus 163 ~~a~~~~~ai~~~p~i---~a~i~~~--------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkY 225 (394)
T 3txn_A 163 TSARTTANAIYCPPKV---QGALDLQ--------------SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKY 225 (394)
T ss_dssp HHHHHHHHHSCCCHHH---HHHHHHH--------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhhhccCCCCHHH---HHHHHHH--------------hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 9987653 122322 2322221 266777 799999999999988754322 1233444
Q ss_pred HHHHHHHcCCh
Q 008818 377 LANAYYLTGDH 387 (552)
Q Consensus 377 la~~~~~~~~~ 387 (552)
++.+-...++.
T Consensus 226 lvL~aLl~~~r 236 (394)
T 3txn_A 226 MLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHTTCG
T ss_pred HHHHHHHcCCH
Confidence 55555555553
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.57 E-value=0.25 Score=52.33 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=66.0
Q ss_pred HHcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhccccccc
Q 008818 259 LKSGRLQSSIS-VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 337 (552)
Q Consensus 259 ~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 337 (552)
...+++++|.. .+. .-| +......+...+...|.+++|+...+ ++...+.+ ..
T Consensus 610 ~~~~~~~~a~~~~l~----~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l---------- 663 (814)
T 3mkq_A 610 TLRGEIEEAIENVLP----NVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFEL---AL---------- 663 (814)
T ss_dssp HHTTCHHHHHHHTGG----GCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HH----------
T ss_pred HHhCCHHHHHHHHHh----cCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheeh---hh----------
Confidence 46788888876 331 111 02233666777788888888876552 22222222 22
Q ss_pred ccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008818 338 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 397 (552)
..|++++|.+..+ ..++...|..+|..+...|+++.|..+|.++
T Consensus 664 -----------~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 -----------KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp -----------HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7888999988754 2356889999999999999999999999886
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.55 E-value=0.21 Score=47.08 Aligned_cols=177 Identities=10% Similarity=-0.032 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHh-hccCchHHHhHHHHHHHHHhhcCCCCCCCC
Q 008818 372 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE-RSQEPTEQLSWAGNEMASILREGDPVQIEP 450 (552)
Q Consensus 372 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (552)
.+.+.||.+|...|++++-..++.......+.-+.+........+-+.. ......+.......+........... .-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~-flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT-FLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4567889999999999888888877665555555444443332222221 11111111111111111111111110 000
Q ss_pred HHHHHhHHHHHhchhhHHHHHHHHHhhhcch---h-----hhhhhhHHHHHHhhhhHHHHHHHHHHHHHhC----CC---
Q 008818 451 PIAWAGFAAVQKTHHEVAAAFETEENELSKM---E-----ECAGAGESAFLDQASAVNVAKECLLAALKAD----PK--- 515 (552)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~--- 515 (552)
...-..+|..|...|+|.+|+..+.+.+... + .+.+.....+|...+++.++...+.++.... ++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 0122378999999999999998888744421 1 1335566678889999999999999987643 21
Q ss_pred cHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHhcc
Q 008818 516 AAHIWANLANAYY-LTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 516 ~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~ 549 (552)
.+.....-|.++. ..++|..|..+|-++++-+.+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 2345566788888 899999999999999876653
No 236
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.22 E-value=0.23 Score=43.42 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=80.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccc
Q 008818 257 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 336 (552)
Q Consensus 257 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 336 (552)
.+++.|+.++|++.....++.+|.+......+..++.-.|+|+.|.+.++-+.+++|........+..+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~--------- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK--------- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH---------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH---------
Confidence 34667888888888888888888888888888888888888888888888888888876554322222221
Q ss_pred cccccccchhHHHhcCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 008818 337 AGANTGEGACLDQASAVNVAKECLLAALKA--------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
|...=.+++.- .|........-+......|+.++|...-.++++..|...
T Consensus 77 -------------------aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 77 -------------------AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp -------------------HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred -------------------HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11111112211 111222233345556667899999999888888877654
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.17 E-value=0.37 Score=38.44 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC--CCCHHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL--KD--QNHPAALINYA 323 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~--p~~~~~~~~l~ 323 (552)
++....++.+++-.|.|..++-.+.+ -+...+.+....||....++..|+.+++..+. .+ |+- ++. +-
T Consensus 33 ~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~--~~ 104 (242)
T 3kae_A 33 PEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DAR--IQ 104 (242)
T ss_dssp -CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHH--HH
T ss_pred hHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccc--cc
Confidence 34455566777777777777665542 23455666667777777777777777777773 22 221 111 00
Q ss_pred HHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008818 324 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-IWANLANAYYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p 402 (552)
..=.+|.+.+ .+..+|.++...|+.++|+.+|.......|
T Consensus 105 ---------------------------------------~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 105 ---------------------------------------EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp ---------------------------------------TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 0112455444 566789999999999999999999999888
Q ss_pred CCc
Q 008818 403 NCM 405 (552)
Q Consensus 403 ~~~ 405 (552)
-.+
T Consensus 146 lf~ 148 (242)
T 3kae_A 146 LFS 148 (242)
T ss_dssp CHH
T ss_pred ccc
Confidence 654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.042 Score=56.43 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=84.7
Q ss_pred HcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhh--------CCCCHHHH---HHHHH
Q 008818 260 KSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYF--QS-GDMEQSAKCFQDLILK--------DQNHPAAL---INYAA 324 (552)
Q Consensus 260 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~p~~~~~~---~~l~~ 324 (552)
..++ ++.|+..+++..+.+|.... ++..+.+.. .. .+--+|+..+.+.++. .+.+.... ...+.
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 58899999999998886543 222222222 12 2345677777777642 23333221 11122
Q ss_pred HHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008818 325 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 397 (552)
++.. .+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~--------------Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNI--------------QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHH--------------HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2221 2455668999999999999999999999999999999999999999999887665
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.15 E-value=1.3 Score=44.80 Aligned_cols=51 Identities=8% Similarity=-0.043 Sum_probs=33.9
Q ss_pred HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008818 494 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 544 (552)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 544 (552)
++.|+++.|..+|++.-..........|.+|.++...|+.++|..+|+++.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345777777777765544333456667777777777777777777777665
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.059 Score=55.37 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=48.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 008818 489 ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 542 (552)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 542 (552)
.+..+...|+++-|+.+.++|+...|..-..|+.|+.+|..+|+|+.|+-.+.-
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 344677889999999999999999999999999999999999999999977653
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.94 E-value=0.18 Score=44.12 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=55.9
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 008818 348 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 406 (552)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 406 (552)
.+.|++++|++.....++.+|.+......+..++.-.|+++.|...++.+.+++|+...
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 37899999999999999999999999999999999999999999999999999998653
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.61 Score=45.17 Aligned_cols=196 Identities=11% Similarity=0.023 Sum_probs=120.7
Q ss_pred hcCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhcc
Q 008818 350 ASAVNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 423 (552)
Q Consensus 350 ~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~ 423 (552)
.+++..|++.+....+. .+....+...+..++...|+++...+.+.-.......-..+...+....+.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888877544432 133577888889999999999998887765554433322222222111111111000
Q ss_pred CchHHHhHHHHHHHHHhhcC--CCCCC--CCHHHHHhHHHHHhchhhHHHHHHHHHhhhcc--------hhhhhhhhHHH
Q 008818 424 EPTEQLSWAGNEMASILREG--DPVQI--EPPIAWAGFAAVQKTHHEVAAAFETEENELSK--------MEECAGAGESA 491 (552)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~la~ 491 (552)
.. + .. ........+... ..+.. ........++.++...|++.+|...+...... .....+.....
T Consensus 109 ~~-d-~~-~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 109 SL-D-LN-TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp TT-H-HH-HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred ch-h-HH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 00 0 00 000111111111 11111 24456678999999999999999988873321 11245667778
Q ss_pred HHHhhhhHHHHHHHHHHHHH---hCCCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 492 FLDQASAVNVAKECLLAALK---ADPKA----AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~---~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.+...+++..|...+.++.. ..+.. ...+...|.++...++|.+|..+|.++++-+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 89999999999999998743 22222 35667889999999999999999999987654
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.76 E-value=0.12 Score=54.85 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008818 259 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307 (552)
Q Consensus 259 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (552)
...|++++|.+..+. .++...|..+|..+...|+++.|+++|.+
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555544322 13344555555555555555555555544
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.71 E-value=0.32 Score=46.22 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
..+...++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++.+
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346667889999999999999999999999999999999999999999999999999988754
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.11 Score=42.37 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=63.6
Q ss_pred ccCchhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 224 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
.++.|+++.|.+..+.. ++...|..||......|+++-|+.+|.++-. +..+..+|...|+.++-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 44667888888877654 4567888888888888888888888887532 2334455666677655544
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHH
Q 008818 304 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 363 (552)
Q Consensus 304 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 363 (552)
.-+.+.... +...+ .. ++...|+++++++.|.+.
T Consensus 82 la~iA~~~g-~~n~a----f~---------------------~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE-DFGSM----LL---------------------NTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT-CHHHH----HH---------------------HHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc-cHHHH----HH---------------------HHHHcCCHHHHHHHHHHC
Confidence 444433221 11111 11 223788899998888654
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.41 Score=39.07 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 326 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 326 (552)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-. .. .+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~---~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FD---KLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HH---HHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HH---HHHHHH
Confidence 344555554 5779999999988765 5788999999999999999999999988632 22 222223
Q ss_pred HHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008818 327 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 397 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 397 (552)
. ..|+.+.-...-+.+.... + +.....+++.+|+++++++.|.+.
T Consensus 71 ~---------------------~tg~~e~L~kla~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 71 L---------------------VTGDVNKLSKMQNIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp H---------------------HHTCHHHHHHHHHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred H---------------------HhCCHHHHHHHHHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3 5566655444444443322 2 223345677888888888888554
No 247
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.43 E-value=0.087 Score=51.48 Aligned_cols=80 Identities=20% Similarity=0.087 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 328 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 328 (552)
..+..||.+......+..|..+|.+|+.+.|++...+..||.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 36677999999999999999999999999999999999999999999999999999999998887789999888887753
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.64 E-value=0.69 Score=43.89 Aligned_cols=89 Identities=10% Similarity=-0.013 Sum_probs=70.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC----------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008818 256 LILLKSGRLQSSISVLSSLLAVDPN----------N------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 313 (552)
Q Consensus 256 ~~~~~~~~~~~A~~~~~~al~~~p~----------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 313 (552)
......|+.+.|...+.+++.+... . ..+...++..+...|++.+|+..+.+++..+|
T Consensus 123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P 202 (388)
T 2ff4_A 123 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP 202 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3334567777888888888776321 1 12345667788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHh
Q 008818 314 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 365 (552)
Q Consensus 314 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 365 (552)
-+...+..+..++. ..|+..+|+..|++..+
T Consensus 203 ~~E~~~~~lm~al~---------------------~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 203 YREPLWTQLITAYY---------------------LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHH
Confidence 99999998888887 89999999999987644
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.63 E-value=1.4 Score=35.25 Aligned_cols=153 Identities=18% Similarity=0.109 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLA--V---------------DPNNCD-CIGNLGIAYFQSGDMEQSAKCFQDLI 309 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al 309 (552)
..+.+.-+.||....+|..|+.+++..+. + +|.+.+ .+..+|.++...|+.++|+.+|....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 34555566777777777777777777762 2 333333 45667888888888889988888888
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHH--------HHHHHHHhcCCCcHHH-HHHHHHH
Q 008818 310 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK--------ECLLAALKADPKAAHI-WANLANA 380 (552)
Q Consensus 310 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~--------~~~~~al~~~p~~~~~-~~~la~~ 380 (552)
...|-.+..-.. .+...-....+.......|.--.+...+.... ...++-...-|.-... ....+..
T Consensus 142 ~~~~lf~~vEnl----iyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~ 217 (242)
T 3kae_A 142 GKSFLFSPVENL----LLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARR 217 (242)
T ss_dssp HHCCCHHHHHHH----HHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHH
T ss_pred CCccccchHHHH----HhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 777654433211 11000000000000000000000001111111 1222333334553332 3456778
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC
Q 008818 381 YYLTGDHRSSGKCLEKAAKLEPNC 404 (552)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~ 404 (552)
|+.+|..++...+|...-..+|..
T Consensus 218 yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 218 YFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHhcccchhHHHHHHHHHhcCCCc
Confidence 899999999999999999999863
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.29 Score=47.26 Aligned_cols=125 Identities=17% Similarity=0.102 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 008818 227 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAK 303 (552)
Q Consensus 227 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~ 303 (552)
...+++.+..+.+-...+..-..++..+|..|...|++++|.+.|.++..... ...+.+.....++...++|..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34445555444332222333455788999999999999999999999887633 346788899999999999999999
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCC
Q 008818 304 CFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 368 (552)
Q Consensus 304 ~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 368 (552)
.+.++-... ..++..... -.++. |.++...++|..|...|..++....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~-lk~~~----------------gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNR-YKTYY----------------GIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHH-HHHHH----------------HHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhcCCCHHHHHH-HHHHH----------------HHHHHHhChHHHHHHHHHHHhccCC
Confidence 999987552 223332211 11121 4455578999999999888876543
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.08 E-value=3.3 Score=45.64 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 309 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (552)
.+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 34455666677665544 334566777778888999999999999999998864
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.98 E-value=0.4 Score=46.87 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHH
Q 008818 284 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 363 (552)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 363 (552)
++..+|.+......+..|..+|.+|+.+.|++...+..+|.+.. ..|+.-+|+-+|.++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~---------------------~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS---------------------SKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH---------------------HTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh---------------------cccccHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999988 778889999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHH
Q 008818 364 LKADPKAAHIWANLANAYYL 383 (552)
Q Consensus 364 l~~~p~~~~~~~~la~~~~~ 383 (552)
+......+.+..++...+..
T Consensus 213 l~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 213 IAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HSSSBCCHHHHHHHHHHHHH
T ss_pred HhcCCCChhHHHHHHHHHHH
Confidence 98877788888888887765
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.56 E-value=5.6 Score=38.38 Aligned_cols=199 Identities=10% Similarity=-0.005 Sum_probs=112.0
Q ss_pred CchhHHHHHHHHHHHHhc------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 008818 226 EPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 299 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 299 (552)
..+++.+|++.+...-+. .+....+...+..++...|+|+...+.+.-..+.......+...+.....
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~------ 101 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVM------ 101 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHH------
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------
Confidence 567889998877544322 22345677788889999999998877776555444333333222221111
Q ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh-hccccc---ccccccccchhHHHhcCHHHHHHHHHHHHhc----CCC-
Q 008818 300 QSAKCFQDLILKDQNH-PAALINYAALLLCK-YGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKA----DPK- 369 (552)
Q Consensus 300 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~- 369 (552)
.++ ...|+. ......+..++... .+.... .+.....++.++...|++.+|...+.....- .+.
T Consensus 102 ---~~l----~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~ 174 (445)
T 4b4t_P 102 ---EYL----KSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS 174 (445)
T ss_dssp ---HHH----HHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH
T ss_pred ---HHH----hcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH
Confidence 111 111111 00010000000000 000000 0111123466667999999999999887542 111
Q ss_pred -cHHHHHHHHHHHHHcCChHHHHHHHHHHHh-h--CCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCC
Q 008818 370 -AAHIWANLANAYYLTGDHRSSGKCLEKAAK-L--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 445 (552)
Q Consensus 370 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (552)
-...+.....+|...+++.+|...++++.. . .+..+...
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk------------------------------------- 217 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK------------------------------------- 217 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH-------------------------------------
Confidence 356788889999999999999999998743 1 12111100
Q ss_pred CCCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhc
Q 008818 446 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 479 (552)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 479 (552)
...+...|.++...++|.+|...|.....
T Consensus 218 -----~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 -----LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp -----HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 13466778888888899888888877554
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.45 E-value=1.2 Score=47.16 Aligned_cols=101 Identities=8% Similarity=-0.011 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Q 008818 246 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALI 320 (552)
Q Consensus 246 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 320 (552)
.....+..+-..|.+.|+.++|...|....+. ..-+...|..+...|.+.|+.++|.+.|++..+.. .-+...|.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 33457888999999999999999999775432 22358899999999999999999999999998653 22455566
Q ss_pred HHHHHHHHhhcccccccccccccchhHHHhcC-HHHHHHHHHHHHhcC
Q 008818 321 NYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKAD 367 (552)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~ 367 (552)
.+...+- +.|+ .++|.++|++..+..
T Consensus 205 tLI~glc---------------------K~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMG---------------------RQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHH---------------------HHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHH---------------------hCCCcHHHHHHHHHHHHHcC
Confidence 6655544 6776 578899999988764
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.73 E-value=1.9 Score=45.74 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=73.3
Q ss_pred ccCchhHHHHHHHHHHHHhc----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Q 008818 224 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGD 297 (552)
Q Consensus 224 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~ 297 (552)
+.+.|+.++|...|....+. -.-+...|..+...|.+.|++++|.+.|++..+. .| +...|..+-.++.+.|+
T Consensus 137 lcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~ 215 (1134)
T 3spa_A 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQDQ 215 (1134)
T ss_dssp HHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTC
T ss_pred HHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCC
Confidence 66889999999999775432 2235779999999999999999999999999775 34 57788888889999998
Q ss_pred -HHHHHHHHHHHHhhC
Q 008818 298 -MEQSAKCFQDLILKD 312 (552)
Q Consensus 298 -~~~A~~~~~~al~~~ 312 (552)
.++|.+.|++.....
T Consensus 216 ~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 216 DAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcC
Confidence 578999999998764
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.71 E-value=1.4 Score=42.83 Aligned_cols=127 Identities=11% Similarity=0.075 Sum_probs=54.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHhh---
Q 008818 256 LILLKSGRLQSSISVLSSLLA-----------VDPNNCDCIGNLGIAYFQSGDMEQSAK----------CFQDLILK--- 311 (552)
Q Consensus 256 ~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~~----------~~~~al~~--- 311 (552)
..+...+++++|.++-...+. +++-...+|+..+.++...|+...... .+-.+++.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345567888888887765541 134456778888888888887765322 22222221
Q ss_pred --CCCC-HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHH
Q 008818 312 --DQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAY 381 (552)
Q Consensus 312 --~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~ 381 (552)
++.. ...+..+-..| ...+.++.|..+..++. .|. ....++.+|.++
T Consensus 224 r~D~~~qa~l~nllLRnY---------------------L~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDF---------------------LNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp CSSSCHHHHHHHHHHHHH---------------------HHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHH
T ss_pred ccCcchhHHHHHHHHHHH---------------------HccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHH
Confidence 2221 12233333333 38899999999999985 343 255678899999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCc
Q 008818 382 YLTGDHRSSGKCLEKAAKLEPNCM 405 (552)
Q Consensus 382 ~~~~~~~~A~~~~~~al~~~p~~~ 405 (552)
..+++|.+|..++..|+...|.+.
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHhccHHHHHHHHHHHHHhCCcch
Confidence 999999999999999999888654
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.78 Score=44.19 Aligned_cols=104 Identities=16% Similarity=0.067 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHH
Q 008818 279 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 355 (552)
Q Consensus 279 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (552)
.....++..+|..|...|++++|.+.|.++....... .+.+.....+.+ ..+++..
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l---------------------~~~d~~~ 186 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF---------------------FYNDQLY 186 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH---------------------HHTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH---------------------HhccHHH
Confidence 3455688999999999999999999999988754332 344455555555 8899999
Q ss_pred HHHHHHHHHhcC---CC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008818 356 AKECLLAALKAD---PK---AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 403 (552)
Q Consensus 356 A~~~~~~al~~~---p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 403 (552)
+...+.++.... ++ ........|.++...++|.+|...|-.++.....
T Consensus 187 ~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 187 VKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 999999986542 22 1234556677888899999999999998876443
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.30 E-value=10 Score=38.17 Aligned_cols=124 Identities=11% Similarity=0.065 Sum_probs=82.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCD----CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 329 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 329 (552)
++.......+.+.|...+.+......-+.. .+..++.-+...+...++...+.+......+ ......++...+
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Al-- 296 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMAL-- 296 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHH--
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHH--
Confidence 444455566889999998877544332322 2223333333344356777788776654433 333223333333
Q ss_pred hcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008818 330 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 399 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 399 (552)
+.|++..|...|.+.-..........+.+|.++..+|+.++|..+|+++..
T Consensus 297 -------------------r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 -------------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -------------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -------------------HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 679999999999876654445688899999999999999999999999985
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.76 E-value=0.44 Score=46.26 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 316 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 316 (552)
.+.++..+-..|...+.+++|.....++. .|.. ...++.+|.++...++|.+|.+++..|+...|.+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35678888999999999999999999985 3432 45678899999999999999999999999877553
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.07 E-value=3.6 Score=45.31 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=27.8
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 275 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 275 (552)
.|.++...+.+|.++...|++++|..+|+++-
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45566677899999999999999999999884
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.94 E-value=11 Score=34.10 Aligned_cols=80 Identities=8% Similarity=-0.020 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------h---cCCCCHHHHHHHH-H
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------A---VDPNNCDCIGNLG-I 290 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----------------~---~~p~~~~~~~~la-~ 290 (552)
.+|+..-.+.-...-.++..+..+|..|++.|++.+|..+|-..- + -.|...+.+...+ .
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 344444433323233678999999999999999999999885221 1 1122233333333 3
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 008818 291 AYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~ 310 (552)
.|...|+...|...|+...+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 55678899888888776653
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.69 E-value=19 Score=32.87 Aligned_cols=135 Identities=12% Similarity=0.144 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------hcCCCCHHHHHHH-HHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------AVDPNNCDCIGNL-GIAYF 293 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----------------~~~p~~~~~~~~l-a~~~~ 293 (552)
.+|+.+-.+.-...-.+++.+..+|..|++.+++.+|..+|-..- +..|...+.+... ...|.
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL 198 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYL 198 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344444444222334678999999999999999999988873110 0022233333333 34567
Q ss_pred HcCCHHHHHHHHHHHHh----hCC------------------CCHHHHHHHHHHHHHhhcccccccccccccchhHHHhc
Q 008818 294 QSGDMEQSAKCFQDLIL----KDQ------------------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 351 (552)
Q Consensus 294 ~~g~~~~A~~~~~~al~----~~p------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (552)
..++...|...+...++ .+| ..+. .+...+++.. .+.+
T Consensus 199 ~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PL--LNFl~lLllt------------------~q~~ 258 (336)
T 3lpz_A 199 LVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPL--LNFISMLLLS------------------VQKG 258 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHH--HHHHHHHHHH------------------HHSC
T ss_pred HhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCch--HHHHHHHHHH------------------HhcC
Confidence 78899988886655543 223 2222 2222222211 1222
Q ss_pred ---CHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 008818 352 ---AVNVAKECLLAALKADP-KAAHIWANLANAYYLTG 385 (552)
Q Consensus 352 ---~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 385 (552)
-|..-.+.|...++.+| .....+..+|..|+...
T Consensus 259 ~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 259 SPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp CHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 24455566667777777 66777778888887654
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.56 E-value=36 Score=36.04 Aligned_cols=135 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHH
Q 008818 159 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 238 (552)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 238 (552)
+++.+|.++...+ .+++.++...+.......... ....... .+..++|.++...++ +++...+.
T Consensus 415 AllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~-~~~~ir~-gAaLGLGla~~GS~~------------eev~e~L~ 478 (963)
T 4ady_A 415 SLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDE-DVDVLLH-GASLGIGLAAMGSAN------------IEVYEALK 478 (963)
T ss_dssp HHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCH-HHHHHHH-HHHHHHHHHSTTCCC------------HHHHHHHH
T ss_pred HHHHHHHhcCCCc--HHHHHHHHHHHcCcccccccc-ccHHHHH-HHHHHHHHHhcCCCC------------HHHHHHHH
Confidence 5566666655444 467777777765421000000 0111122 233466666544433 56667777
Q ss_pred HHHhcCcchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 239 ESMQSDTRQA--VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 309 (552)
Q Consensus 239 ~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (552)
..+..+.... .+-+.+|.++...|+-+-....+..+.+-..+...-...+|..+...|+.+.+-...+...
T Consensus 479 ~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 479 EVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 7665443221 2445577777777776555555554444322222222333444445666665555544433
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.47 E-value=2.5 Score=32.52 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=44.0
Q ss_pred chhHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 133 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 133 ~~~~~~~~~a~~~l~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
....+.-++..+.+..++..++-++..+..+|.+|.+.|+..+|.+.+.+|.+.
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345566677777777766677888999999999999999999999999999875
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.09 E-value=0.00056 Score=64.77 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 332 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 332 (552)
..|.-++..|.|+.|.-.|..+ ++ |..|+.++..+|+|..|++.-+++ +++..|-.....+......
T Consensus 149 ~VGDrcf~e~lYeAAKilys~i----sN----~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGS----CC----CTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHHHccCHHHHHHHHHhC----cc----HHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHH
Confidence 4566666667776666555432 11 334556666666666666554432 3344444444444433222
Q ss_pred ccc---------ccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 008818 333 VLA---------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 394 (552)
Q Consensus 333 ~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 394 (552)
..+ .+...-.+...|...|.+++-+..++.++.+..-+......||.+|.+- +.++-++++
T Consensus 216 rLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 216 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp TTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred HHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 222 2444455667788999999999999999998888999999999888754 344444444
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.00 E-value=31 Score=31.08 Aligned_cols=88 Identities=8% Similarity=-0.056 Sum_probs=51.6
Q ss_pred CCCCHHHHHhHHHHHhchhhHHHHHHHHHhhhcchhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH-
Q 008818 447 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN- 525 (552)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~- 525 (552)
...++..+..+|..+...+++.+|..++-..-++ +...+.. .+. +++++.-.-.|...+.+...+.
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s~~~~a~---~l~---------~w~~~~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-SMIKYVD---LLW---------DWLCQVDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHHHHHH---HHH---------HHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-cHHHHHH---HHH---------HHHHhcCCCCcchHHHHHHHHHH
Confidence 4578899999999999999998888776522110 1111110 000 1111100012334555555554
Q ss_pred HHHHcCChhHHHHHHHHHHHHh
Q 008818 526 AYYLTGDHRSSGKCLEKVLMVY 547 (552)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~l~ 547 (552)
.|...|+...|...|+...+..
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 4578899999999998877665
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.57 E-value=93 Score=33.02 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=101.3
Q ss_pred HHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHhcCc--
Q 008818 168 QRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-- 245 (552)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p-- 245 (552)
...|+.++++..+.+-+... ...+......+.+++|.++. |...+++..+...+..+.
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~-------~s~~~~ik~GAllaLGli~a-------------g~~~~~~~lL~~~L~~~~~~ 444 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGS-------RASSRFIKGGSLYGLGLIYA-------------GFGRDTTDYLKNIIVENSGT 444 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTS-------CCSCHHHHHHHHHHHHHHTT-------------TTTHHHHHHHHHHHHHHSSC
T ss_pred hccCchHHHHHHHHHhcccc-------CCCcHHHHHHHHHHHHHhcC-------------CCcHHHHHHHHHHHcCcccc
Confidence 35577778877776654310 00111122344556666532 222467888887775432
Q ss_pred ----ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008818 246 ----RQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 315 (552)
Q Consensus 246 ----~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 315 (552)
+. ..+-..||.++...++ +++.+.+...+.-+... ..+-+.+|.++.-.|+-+-....+..+.....+.
T Consensus 445 ~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~ 523 (963)
T 4ady_A 445 SGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN 523 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH
Confidence 01 1355578888877776 56777787777643321 1345677888888888776666666655432221
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHcCChHHHH
Q 008818 316 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH----IWANLANAYYLTGDHRSSG 391 (552)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~ 391 (552)
..-...+|..+. ..|+.+.+-...+.... ..+ +. +-..+|.+|...|+...-.
T Consensus 524 vrR~aalgLGll---------------------~~g~~e~~~~li~~L~~-~~d-p~vRygaa~alglAyaGTGn~~aIq 580 (963)
T 4ady_A 524 ITRGLAVGLALI---------------------NYGRQELADDLITKMLA-SDE-SLLRYGGAFTIALAYAGTGNNSAVK 580 (963)
T ss_dssp HHHHHHHHHHHH---------------------TTTCGGGGHHHHHHHHH-CSC-HHHHHHHHHHHHHHTTTSCCHHHHH
T ss_pred HHHHHHHHHHhh---------------------hCCChHHHHHHHHHHHh-CCC-HHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 111122222222 44555555444444433 222 33 3345677888899854444
Q ss_pred HHHHHHHh
Q 008818 392 KCLEKAAK 399 (552)
Q Consensus 392 ~~~~~al~ 399 (552)
..+..+..
T Consensus 581 ~LL~~~~~ 588 (963)
T 4ady_A 581 RLLHVAVS 588 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 46666654
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.75 E-value=53 Score=29.88 Aligned_cols=245 Identities=13% Similarity=0.021 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHhcCcc---h--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHHcC
Q 008818 228 EELEEILSKLKESMQSDTR---Q--AVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNN----CDCIGNLGIAYFQSG 296 (552)
Q Consensus 228 ~~~~~A~~~~~~al~~~p~---~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~----~~~~~~la~~~~~~g 296 (552)
++.++-+.-++..++...- + -..+..++.=|.++++|++|++.+...... .-.. .+....+..+|...+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 3446666666666654432 1 123445666688899999999876544322 1111 122333335555443
Q ss_pred C--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Q 008818 297 D--MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 374 (552)
Q Consensus 297 ~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (552)
- -++.+.-+.+++...|........ -..+|+.+-.+.=...-.++..+
T Consensus 90 ~~~~~~~~~rL~~L~~~~~~~~p~r~~------------------------------fi~~ai~WS~~~g~~~~Gdp~LH 139 (336)
T 3lpz_A 90 QRVDGASRGKLLGCLRLFQPGEPVRKR------------------------------FVKEMIDWSKKFGDYPAGDPELH 139 (336)
T ss_dssp CCCCHHHHHHHHHHHTTSCTTCHHHHH------------------------------HHHHHHHHHHHHSSCTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcHHHH------------------------------HHHHHHHHHhhcCCCCCCCHHHH
Confidence 1 233444444455544433221111 13445555444222223479999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHhHhhccCchHHHhHHHHHHHHHhhcCCCCCCCCHHHH
Q 008818 375 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAW 454 (552)
Q Consensus 375 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (552)
..+|..|++.+++.+|..+|- +. ..+.+..+..+....... .. +.....+
T Consensus 140 ~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~------------------------~~---~~e~dlf 189 (336)
T 3lpz_A 140 HVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQ------------------------DE---SHTAPLY 189 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHT------------------------SC---GGGHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHh------------------------cC---CccHHHH
Confidence 999999999999999999882 21 111112222222211111 00 1222333
Q ss_pred H-hHHHHHhchhhHHHHHHHH---Hhhhc---c----------------hhhhhhh---hHHHHHHhhh---hHHHHHHH
Q 008818 455 A-GFAAVQKTHHEVAAAFETE---ENELS---K----------------MEECAGA---GESAFLDQAS---AVNVAKEC 505 (552)
Q Consensus 455 ~-~~~~~~~~~~~~~~A~~~~---~~~l~---~----------------~~~~~~~---~la~~~~~~~---~~~~A~~~ 505 (552)
. .....|...++...|...+ ...+. + .+..... .+...-++.+ -|..-...
T Consensus 190 iaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~ 269 (336)
T 3lpz_A 190 CARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSK 269 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 3333455566666665533 33221 1 0111111 2222333444 36677778
Q ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHcCC
Q 008818 506 LLAALKADP-KAAHIWANLANAYYLTGD 532 (552)
Q Consensus 506 ~~~al~~~p-~~~~~~~~lg~~~~~~g~ 532 (552)
|+..++.+| .....+..+|.+|+....
T Consensus 270 Y~~~l~rd~~~~~~~L~~IG~~YFgi~~ 297 (336)
T 3lpz_A 270 YEANLNELNGIWDTALELIAEMYFGIQR 297 (336)
T ss_dssp THHHHHTTTTTTHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHcCCCC
Confidence 888888888 788999999999987643
No 269
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=73.08 E-value=7.2 Score=27.10 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=15.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 008818 490 SAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~ 511 (552)
|.-.-+.|+|++|+.+|..+++
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3356677777777777776655
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=72.38 E-value=21 Score=27.58 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=58.8
Q ss_pred CchhHHHHHHHHHHHHhcCcchHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008818 226 EPEELEEILSKLKESMQSDTRQAVVWNTLG-LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 304 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 304 (552)
..|++...+.+|-+.-. +.. +..+| ..+..+|+-++-.+.+...+...+-++..+..+|.+|.+.|+..+|-+.
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se----~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNE----HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCH----HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHH----HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 34566777777655322 222 22333 4566788888888888887777777899999999999999999999999
Q ss_pred HHHHHhh
Q 008818 305 FQDLILK 311 (552)
Q Consensus 305 ~~~al~~ 311 (552)
+.+|-+.
T Consensus 148 l~~AC~k 154 (172)
T 1wy6_A 148 LIEACKK 154 (172)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998764
No 271
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.83 E-value=7.9 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=15.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 008818 490 SAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~ 511 (552)
|.-.-+.|+|++|+.+|..+++
T Consensus 18 Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3356777778877777777665
No 272
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.78 E-value=48 Score=28.05 Aligned_cols=65 Identities=11% Similarity=0.109 Sum_probs=40.3
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
||....+|..++.. . +++..+|..+... .-..+..|...|..+...|++.+|...|+..++....
T Consensus 116 D~RyLklWl~Ya~~---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 116 DVRYLRIWMQYVNY---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHHTT---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHc---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44455566555552 1 3445555555443 4455667777777777778888888888877776544
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.39 E-value=35 Score=36.59 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=63.2
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCch
Q 008818 149 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 228 (552)
Q Consensus 149 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 228 (552)
.+..-|.++..-+.+|.+|...|++++|..+|++|-.-..... ...
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~----------------------------------~~~ 877 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT----------------------------------SQF 877 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSC----------------------------------CSC
T ss_pred HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCc----------------------------------ccc
Confidence 4456788888889999999999999999999998642100000 000
Q ss_pred hH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHH
Q 008818 229 EL-EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNNCD 283 (552)
Q Consensus 229 ~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 283 (552)
.. ......+ ...+........|.....++...+-++-+++..+.||.. .+++..
T Consensus 878 ~~~~~~~~ll-~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 878 AVLREFQEIA-EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp GGGHHHHHHH-HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cchhhhhhcc-CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 00 1111111 111222223446677888889999999999999999975 344543
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.45 E-value=77 Score=33.96 Aligned_cols=110 Identities=11% Similarity=0.110 Sum_probs=67.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCH--HHHHHHHHHHHHhh
Q 008818 254 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHP--AALINYAALLLCKY 330 (552)
Q Consensus 254 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~--~~~~~l~~~~~~~~ 330 (552)
+...+...|.++-|. ..+...|.++..-+.+|.+|...|++++|..+|+++-.- ..... ........+.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll---- 887 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA---- 887 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH----
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc----
Confidence 455566677776543 355667777777888999999999999999999886521 11110 0000000000
Q ss_pred cccccccccccccchhHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008818 331 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 402 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 402 (552)
...+........|.....++...+-++-++...+.|++...
T Consensus 888 -------------------------------~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 888 -------------------------------EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 928 (950)
T ss_dssp -------------------------------HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred -------------------------------CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 01111112344677788888888888888888888887543
No 275
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=68.25 E-value=26 Score=27.91 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=42.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCc---HHHH------HHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 489 ESAFLDQASAVNVAKECLLAALKADPKA---AHIW------ANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~------~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.|..++..|+|=+|-+.++.+....+.. ...| ...|....+.|+..-|...+.+++..+.
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3446667788888888888888776543 2222 2233345778999999999999988764
No 276
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.99 E-value=11 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHhhc
Q 008818 161 FLLGLMYQRLGQPLKAVSSYEKAEEILLRC 190 (552)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (552)
..+|..+...|+++.|+.+|-+|+...|.+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 568999999999999999999999986543
No 277
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.91 E-value=5.8 Score=27.58 Aligned_cols=15 Identities=13% Similarity=-0.292 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHHHH
Q 008818 173 PLKAVSSYEKAEEIL 187 (552)
Q Consensus 173 ~~~A~~~~~~al~~~ 187 (552)
.++|+.+..+|++.+
T Consensus 16 ~~~Ai~lv~~Ave~D 30 (83)
T 2w2u_A 16 EEMARKYAINAVKAD 30 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888887763
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=66.52 E-value=17 Score=24.42 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 008818 253 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 284 (552)
Q Consensus 253 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 284 (552)
.+|..+...|++++|..+|-+|+...|.-...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 57777888888888888888888887764443
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.57 E-value=6.3 Score=27.41 Aligned_cols=15 Identities=13% Similarity=-0.383 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHH
Q 008818 173 PLKAVSSYEKAEEIL 187 (552)
Q Consensus 173 ~~~A~~~~~~al~~~ 187 (552)
.++|+.+..+|++.+
T Consensus 8 ~~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 8 EDMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 347888888888764
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=65.44 E-value=11 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=15.2
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHH
Q 008818 488 GESAFLDQASAVNVAKECLLAAL 510 (552)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al 510 (552)
..+..+...|+|++||.+.+++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 56666666677777777666654
No 281
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.92 E-value=12 Score=26.19 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLL 275 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al 275 (552)
+..+..++..+...|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4566678888888888888888777664
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=62.05 E-value=25 Score=23.58 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008818 286 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 319 (552)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 319 (552)
..+|..+...|++++|..+|-+|+...|.-....
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 5689999999999999999999999998876544
No 283
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=61.49 E-value=10 Score=27.02 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=18.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 008818 522 NLANAYYLTGDHRSSGKCLEKVLMVYCS 549 (552)
Q Consensus 522 ~lg~~~~~~g~~~~A~~~~~~al~l~~~ 549 (552)
.+|..+...|+++.|+.+|-+|+.+|++
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4566666666666666666666666653
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.13 E-value=73 Score=26.42 Aligned_cols=73 Identities=7% Similarity=-0.037 Sum_probs=57.3
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 316 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 316 (552)
.||....+|...+..+ ..+...++...|.-+... .-..+..|...|..+...|++.+|...|+..++......
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4666777888888765 234467888888877654 456788899999999999999999999999998765443
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.57 E-value=85 Score=26.04 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=79.1
Q ss_pred HhHHHHHHHHHHHHHh---CCCCh-HHHHHHHHHHH---HcCCc--hH-HH-HHHHHHHHHHhhccccccchhHHHHHHH
Q 008818 137 EKVSSLKTGLVHVARK---MPKNA-HAHFLLGLMYQ---RLGQP--LK-AV-SSYEKAEEILLRCEADIARPELLSLVQI 205 (552)
Q Consensus 137 ~~~~~a~~~l~~~l~~---~p~~~-~~~~~lg~~~~---~~g~~--~~-A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~ 205 (552)
..+..-++.++..+.. .-++| +.|........ -.|.. .. =. ..+++++....+.+....++.++...-.
T Consensus 6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~ 85 (202)
T 3esl_A 6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIW 85 (202)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 3455556666666555 33444 34433332221 12222 21 23 6888888877666665556666543333
Q ss_pred hhhhcccccccCCCccccccCchhHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 008818 206 HHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 280 (552)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 280 (552)
+.... ..++..++...|.-+... .-..+..|...|..+...|++.+|..+|+..++..-.
T Consensus 86 Ya~~~---------------~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 86 YINLF---------------LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHH---------------STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHhh---------------cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 22221 112245788888777654 4566788889999999999999999999999997643
No 286
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=56.20 E-value=51 Score=23.40 Aligned_cols=58 Identities=17% Similarity=-0.084 Sum_probs=41.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 489 ESAFLDQASAVNVAKECLLAALKADPKAA------HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
.|..++..|+|=+|-+.++.+....|+.. -+....|......|+. |...+.+++..+.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 44566777999999999999888876521 1223334445678888 9999999998764
No 287
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=56.17 E-value=31 Score=33.07 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=65.1
Q ss_pred CchhHHHHHHHHHHHHhcCc------------chHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Q 008818 226 EPEELEEILSKLKESMQSDT------------RQAV----VWNTLGLILLKSGRLQSSISVLSSLLAVDP---------- 279 (552)
Q Consensus 226 ~~~~~~~A~~~~~~al~~~p------------~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------- 279 (552)
+...++++-..+.++....- ..-. ....+-.+|++.++..-+...++..-...+
T Consensus 138 ~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~ 217 (455)
T 3t5v_B 138 SHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLD 217 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCcc
Confidence 34567888888888775411 1111 223456889999999999888875533222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 008818 280 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNH 315 (552)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 315 (552)
+....++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 12457899999999999999999999999998 7765
No 288
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=56.09 E-value=26 Score=29.33 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 008818 248 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 282 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 282 (552)
....+.+|.+++..++|.+|.+.+..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 44566788888888888888888888888777543
No 289
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.46 E-value=77 Score=25.20 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH---H---HHHHHHHcCCHHHHHHHHHHHHhh
Q 008818 252 NTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIG---N---LGIAYFQSGDMEQSAKCFQDLILK 311 (552)
Q Consensus 252 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~---~---la~~~~~~g~~~~A~~~~~~al~~ 311 (552)
+.-|..++..|+|=+|-+.++.+....+.. ...+. . .|......|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456777888899999999999998876544 22222 2 333456789999999999999874
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=55.21 E-value=33 Score=28.71 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008818 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 318 (552)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 318 (552)
....+.+|.++...++|.+|.+.+..|+...|.....
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~ 50 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK 50 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH
Confidence 4568899999999999999999999999998876544
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.82 E-value=16 Score=24.95 Aligned_cols=23 Identities=9% Similarity=-0.122 Sum_probs=12.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHH
Q 008818 488 GESAFLDQASAVNVAKECLLAAL 510 (552)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al 510 (552)
.+|+-+...|+|+.|+.+|+.++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHH
Confidence 44445555555555555555544
No 292
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.63 E-value=24 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=12.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHH
Q 008818 488 GESAFLDQASAVNVAKECLLAAL 510 (552)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al 510 (552)
..|.-....|+|++|+.+|..++
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444555566666666666554
No 293
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=53.07 E-value=44 Score=30.41 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 247 QAVVWNTLGLILLKSGRL--QSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
.+.++.+||.+-...--. ..++..|.+++.. ......-|..+|-.+++.+++.+|+..+-.+-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 355566666654432221 2367777777765 334566688889999999999999999988764
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.03 E-value=86 Score=25.03 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=51.7
Q ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008818 243 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 317 (552)
Q Consensus 243 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 317 (552)
.||....+|...+... ++ +.++|..+... .-..+..|...|..+...|++.+|...|+..++.......
T Consensus 61 nD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4556667777777653 33 56666666544 5567888999999999999999999999999987654443
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=52.89 E-value=18 Score=34.78 Aligned_cols=58 Identities=5% Similarity=-0.042 Sum_probs=37.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHhC--------CC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-hcc
Q 008818 492 FLDQASAVNVAKECLLAALKAD--------PK--AAHIWANLANAYYLTGDHRSSGKCLEKVLMV-YCS 549 (552)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~--------p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~~~ 549 (552)
+|++.++...+...++..-... |. -...+|.+|.++...++|.+|.+++..|++. ++.
T Consensus 185 iYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 185 IYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 5666666655555554332221 11 2456677888888888888888888888877 653
No 296
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.72 E-value=14 Score=27.38 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 008818 499 VNVAKECLLAALKA 512 (552)
Q Consensus 499 ~~~A~~~~~~al~~ 512 (552)
+++|..+..++|++
T Consensus 19 h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 19 YKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 34444444444444
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.68 E-value=97 Score=24.36 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008818 244 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 315 (552)
Q Consensus 244 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 315 (552)
||....+|...+... +++.+.|.-+... .-..+..|...|..+...|++.+|...|+..++.....
T Consensus 67 D~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 67 DPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444455555555432 2255555555443 33456666677777777777777777777777654433
No 298
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=47.47 E-value=33 Score=23.81 Aligned_cols=17 Identities=6% Similarity=-0.169 Sum_probs=7.8
Q ss_pred cCChhHHHHHHHHHHHH
Q 008818 530 TGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 530 ~g~~~~A~~~~~~al~l 546 (552)
.|++++|+.+|..++++
T Consensus 26 ~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 26 ATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 34444444444444443
No 299
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=47.36 E-value=18 Score=25.16 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHH
Q 008818 173 PLKAVSSYEKAEEI 186 (552)
Q Consensus 173 ~~~A~~~~~~al~~ 186 (552)
.+.|+.++.+|++.
T Consensus 10 l~~A~~l~~~Av~~ 23 (85)
T 2v6x_A 10 LTKGIELVQKAIDL 23 (85)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34666666666654
No 300
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.15 E-value=16 Score=27.34 Aligned_cols=13 Identities=31% Similarity=0.210 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHH
Q 008818 174 LKAVSSYEKAEEI 186 (552)
Q Consensus 174 ~~A~~~~~~al~~ 186 (552)
+.|+.++.+|++.
T Consensus 16 ~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 16 QKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555665554
No 301
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=46.73 E-value=84 Score=28.67 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 008818 516 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 516 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 548 (552)
+..-|..+|-.+++.+++.+|+..+-.|-....
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665555443
No 302
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=46.29 E-value=27 Score=24.76 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=7.7
Q ss_pred cCChhHHHHHHHHHHHH
Q 008818 530 TGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 530 ~g~~~~A~~~~~~al~l 546 (552)
.|++++|+.+|..++++
T Consensus 28 ~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 28 ESRYQQALVCYQEGIDM 44 (93)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 34444444444444443
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.14 E-value=1.2e+02 Score=24.27 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHhhhhcccccccCCCccccccCchhHHHHHHHHHHHHh--cCcchHHHHHHH
Q 008818 177 VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ--SDTRQAVVWNTL 254 (552)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 254 (552)
..++++++....+.+....++.++.+ |...+.. .+++...|..+.. +.-..+..|...
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLkl---Wl~ya~~-----------------~~~p~~if~~L~~~~IG~~~AlfY~~w 102 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNL---WLKLGRL-----------------CNEPLDMYSYLHNQGIGVSLAQFYISW 102 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHH---HHHHHHH-----------------CSCHHHHHHHHHHTTSSTTBHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHH---HHHHHHh-----------------cCCHHHHHHHHHHCCcchhhHHHHHHH
Confidence 45677777765555444445555433 2222211 0335556666654 345667888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 008818 255 GLILLKSGRLQSSISVLSSLLAVDPN 280 (552)
Q Consensus 255 a~~~~~~~~~~~A~~~~~~al~~~p~ 280 (552)
|..+...|++.+|.++|+..++....
T Consensus 103 A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 103 AEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999997644
No 304
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=44.56 E-value=32 Score=25.66 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=12.6
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHH
Q 008818 488 GESAFLDQASAVNVAKECLLAALK 511 (552)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~ 511 (552)
..|.-.-..|+|++|+.+|..+++
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444455556666666655543
No 305
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=44.55 E-value=76 Score=29.56 Aligned_cols=64 Identities=6% Similarity=-0.019 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008818 247 QAVVWNTLGLILLKSGRL--QSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 310 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (552)
++.++.+||.+-...--. ..++..|.+++.. ......-|..+|-.+++.+++.+|+..+-.+-.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 344555555554332111 1366777777654 334566688888899999999999999887764
No 306
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=44.17 E-value=30 Score=23.61 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 160 HFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
...+|.-|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788899999999999999999986
No 307
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=41.67 E-value=97 Score=24.46 Aligned_cols=81 Identities=6% Similarity=-0.054 Sum_probs=42.5
Q ss_pred HHHHhchhhHHHHHHHHHh-hhcchhhhhhhhHHHHHHhhhhHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH
Q 008818 458 AAVQKTHHEVAAAFETEEN-ELSKMEECAGAGESAFLDQASAVN-VAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 458 ~~~~~~~~~~~~A~~~~~~-~l~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 535 (552)
+...+-..+|.+.+..+.. .....+....|.||..|.+...+. +........+.+..+ -.+.+=|+|.-.|++++
T Consensus 15 a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~yL~YWIyiGRg~~~e 91 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQYMLYWIYIGRSQSEE 91 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HHHHHHHHHHcCCchHH
Confidence 3444555666666666655 445556666777777777666543 222222222222222 22334455566677777
Q ss_pred HHHHHH
Q 008818 536 SGKCLE 541 (552)
Q Consensus 536 A~~~~~ 541 (552)
|+..-+
T Consensus 92 AlDiA~ 97 (161)
T 2ynq_A 92 ALELAR 97 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 308
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=38.69 E-value=1.9e+02 Score=25.01 Aligned_cols=149 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHH-----cCCHHHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------------------CDCIGNLGIAYFQ-----SGDMEQSAKCFQ 306 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~-----~g~~~~A~~~~~ 306 (552)
+..++.+..+.++|++.+++.+++++.++.- ...|..+..+-.+ ..+....++.|+
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr 113 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 113 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHH
Q ss_pred HHH--hhCCCCHHHHHHHHHHHHHhhcccccccccccccchhHHHhcCH----------HHHHHHHHHHHhc--------
Q 008818 307 DLI--LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV----------NVAKECLLAALKA-------- 366 (552)
Q Consensus 307 ~al--~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~-------- 366 (552)
+-+ ++..-+.+....+-..+.-...........+...|.+|.-.-.+ +.|...|+.|.++
T Consensus 114 ~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pT 193 (261)
T 3ubw_A 114 QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPT 193 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q ss_pred CCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 008818 367 DPKAAHIWANLANAYYL-TGDHRSSGKCLEKAAK 399 (552)
Q Consensus 367 ~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~ 399 (552)
+|-...+..+.+..|+. +++.++|...-++++.
T Consensus 194 hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 194 HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 309
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.87 E-value=1.5e+02 Score=23.33 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 501 VAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 501 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
++...|.-.... .-..+..|...|..+...|++.+|.++|+.+++.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 355555555443 3345666666777777777777777777777653
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.20 E-value=1.4e+02 Score=25.31 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=17.2
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008818 515 KAAHIWANLANAYYLTGDHRSSGKCLEKVLM 545 (552)
Q Consensus 515 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 545 (552)
..+..|...|.++...|++.+|..+|+.+++
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554
No 311
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.83 E-value=37 Score=25.16 Aligned_cols=16 Identities=19% Similarity=-0.155 Sum_probs=12.3
Q ss_pred CchHHHHHHHHHHHHH
Q 008818 172 QPLKAVSSYEKAEEIL 187 (552)
Q Consensus 172 ~~~~A~~~~~~al~~~ 187 (552)
.+++|..+..++|+++
T Consensus 18 ~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4677888888888874
No 312
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=33.79 E-value=1.3e+02 Score=21.36 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008818 287 NLGIAYFQSGDMEQSAKCFQDLILKDQN 314 (552)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 314 (552)
..|..++..|+|=+|-+.++..-...|+
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 3466677778888888888888776643
No 313
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=32.34 E-value=2.4e+02 Score=24.08 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPN 280 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 280 (552)
-+..++.+..+.++|++.+.+.++++..+++
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~e 37 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVE 37 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCC
Confidence 3446677777778888888888888877654
No 314
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=31.99 E-value=1.4e+02 Score=27.96 Aligned_cols=75 Identities=5% Similarity=-0.005 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC
Q 008818 248 AVVWNTLGLILLKSGR--LQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK------DQN 314 (552)
Q Consensus 248 ~~~~~~la~~~~~~~~--~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 314 (552)
+.++.+||.+-.-.-. ...++..|++++.. ......-|..+|-.+.+.+++.+|+..+..+-.. ..+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccc
Confidence 4555556655443221 12467778877764 3344567888899999999999999999888643 334
Q ss_pred CHHHHHHH
Q 008818 315 HPAALINY 322 (552)
Q Consensus 315 ~~~~~~~l 322 (552)
+.+.+..+
T Consensus 342 DeEiYke~ 349 (489)
T 4gq4_A 342 DEEIYKEF 349 (489)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 55555443
No 315
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=31.20 E-value=2.5e+02 Score=24.11 Aligned_cols=149 Identities=8% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 008818 251 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------------------CDCIGNLGIAYFQS-----GDMEQSAKCFQ 306 (552)
Q Consensus 251 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~-----g~~~~A~~~~~ 306 (552)
+..++.+..+.++|++.+.+.++++..++.- ...|..+..+-.+. .+....++.|+
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr 86 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYR 86 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q ss_pred HHH--hhCCCCHHHHHHHHHHHHHhhccc--ccccccccccchhHHHhcCH----------HHHHHHHHHHHhc------
Q 008818 307 DLI--LKDQNHPAALINYAALLLCKYGSV--LAGAGANTGEGACLDQASAV----------NVAKECLLAALKA------ 366 (552)
Q Consensus 307 ~al--~~~p~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~------ 366 (552)
+-+ ++..-+.+....+-..+.-..... ......+...|.+|.-.-.+ +.|...|+.|..+
T Consensus 87 ~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~ 166 (248)
T 3uzd_A 87 EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQ 166 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCC
Q ss_pred --CCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 008818 367 --DPKAAHIWANLANAYYL-TGDHRSSGKCLEKAAK 399 (552)
Q Consensus 367 --~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~ 399 (552)
+|-...+..+.+..|+. +++.++|...-++++.
T Consensus 167 pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 167 PTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 316
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=30.46 E-value=1.4e+02 Score=20.77 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 156 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
.+.....-|.-+++.++|.+|..+|+++...
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4556667788899999999999999999876
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.19 E-value=1.8e+02 Score=24.27 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHH--------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008818 230 LEEILSKLKESMQSDTRQAVVWNTL--------GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 301 (552)
Q Consensus 230 ~~~A~~~~~~al~~~p~~~~~~~~l--------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 301 (552)
++.|+..++..-+..+-....+-.. ..++++.|.|++|.+.+++.+..++.+......|..+-....-+..-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~ 167 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPV 167 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHH
Q ss_pred HHHH
Q 008818 302 AKCF 305 (552)
Q Consensus 302 ~~~~ 305 (552)
+..|
T Consensus 168 lqnF 171 (235)
T 3bu8_A 168 IQNF 171 (235)
T ss_dssp HHTC
T ss_pred HHhc
No 318
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.80 E-value=1.3e+02 Score=28.15 Aligned_cols=24 Identities=8% Similarity=-0.087 Sum_probs=11.8
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHH
Q 008818 486 GAGESAFLDQASAVNVAKECLLAA 509 (552)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~a 509 (552)
+..+|.++++.+++.+|+..+..+
T Consensus 321 YtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 321 YMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeecchhhhhcchHHHHHHHHHHH
Confidence 444455555555555555544433
No 319
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=28.26 E-value=93 Score=31.64 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 008818 250 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 296 (552)
Q Consensus 250 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 296 (552)
.....|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777777777777777766655
No 320
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=27.12 E-value=2.9e+02 Score=23.52 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHH-----hCCCcHH---HHHHHHHHH-HHcCChhHHHHHHHHHHHH
Q 008818 499 VNVAKECLLAALK-----ADPKAAH---IWANLANAY-YLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 499 ~~~A~~~~~~al~-----~~p~~~~---~~~~lg~~~-~~~g~~~~A~~~~~~al~l 546 (552)
.+.|...|+.|.+ +.|.+|. ...+.+..| .-+++.++|...-++|++-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677778877764 5677763 234444444 5679999988877777653
No 321
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.57 E-value=3.5e+02 Score=24.28 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHh
Q 008818 161 FLLGLMYQRLGQPLKAVSSYEKAEEILL 188 (552)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (552)
...|.-+...|++.+|+..|+.++...|
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 4557778899999999999999998754
No 322
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=24.03 E-value=3.3e+02 Score=23.13 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHH-----hCCCcHH---HHHHHHHHH-HHcCChhHHHHHHHHHHHH
Q 008818 499 VNVAKECLLAALK-----ADPKAAH---IWANLANAY-YLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 499 ~~~A~~~~~~al~-----~~p~~~~---~~~~lg~~~-~~~g~~~~A~~~~~~al~l 546 (552)
.+.|...|+.|++ +.|.+|. ...+.+..| .-+++.++|...-++|++-
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3677888888875 5677763 233444444 4589999998887777753
No 323
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.01 E-value=1.6e+02 Score=28.23 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 516 AAHIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 516 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
..-++..+|++|...|++++|+.+.++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4567888999999999999999999998864
No 324
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.53 E-value=1.7e+02 Score=28.38 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 516 AAHIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 516 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
..-++..+|++|...|++++|+.+.++++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3567888999999999999999999998865
No 325
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.51 E-value=4.1e+02 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHh
Q 008818 161 FLLGLMYQRLGQPLKAVSSYEKAEEILL 188 (552)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (552)
...|.-++..|++.+|+..|+.++...|
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 4457778899999999999999998754
No 326
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.13 E-value=1e+02 Score=31.31 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=42.6
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhH
Q 008818 486 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 535 (552)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 535 (552)
....|...+..|+|.-|.+....++..+|++..+...++.+|.++|.-.+
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34455667789999999999999999999999999999999988885443
No 327
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.79 E-value=3.6e+02 Score=23.00 Aligned_cols=32 Identities=3% Similarity=0.014 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 008818 249 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 280 (552)
Q Consensus 249 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 280 (552)
+-+..++.+..+.++|++.+++.+++.+.++.
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~e 40 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 40 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 34556788888889999999999988888765
No 328
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.01 E-value=76 Score=30.55 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008818 247 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV 277 (552)
Q Consensus 247 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 277 (552)
...++..+|++|+..++|++|+...++++..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3456777778888888888888877777754
No 329
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=21.83 E-value=1.7e+02 Score=28.07 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008818 516 AAHIWANLANAYYLTGDHRSSGKCLEKVLMV 546 (552)
Q Consensus 516 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 546 (552)
..-++..+|++|...|+|++|+...++++..
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3567788899998899999999998888864
No 330
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.44 E-value=2.2e+02 Score=20.01 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhCCCc
Q 008818 500 NVAKECLLAALKADPKA 516 (552)
Q Consensus 500 ~~A~~~~~~al~~~p~~ 516 (552)
.+|+++|..+++..|+.
T Consensus 39 ~~Aie~l~~alk~e~~~ 55 (93)
T 1wfd_A 39 QEGIDMLLQVLKGTKES 55 (93)
T ss_dssp HHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 44555566666665553
No 331
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.87 E-value=6.6e+02 Score=25.38 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=20.5
Q ss_pred HHHHHHHHH--HHcCChhHHHHHHHHHHHHhc
Q 008818 519 IWANLANAY--YLTGDHRSSGKCLEKVLMVYC 548 (552)
Q Consensus 519 ~~~~lg~~~--~~~g~~~~A~~~~~~al~l~~ 548 (552)
.+..+..++ +..|+++.|+..+++ +.+.|
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llP 568 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC
Confidence 345555555 889999999998887 44444
No 332
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=20.74 E-value=2e+02 Score=27.53 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=43.0
Q ss_pred hhHHhHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 134 SREEKVSSLKTGLVHVARKMPK--------NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
...+-++...+.|+.++..-|. ...++..+|.+|+..|++++|+...++++..
T Consensus 159 t~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 159 TVAQAYDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp EHHHHHHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4566777788888887766553 3458999999999999999999999999975
No 333
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=20.52 E-value=2.5e+02 Score=27.20 Aligned_cols=53 Identities=19% Similarity=-0.003 Sum_probs=42.2
Q ss_pred hhHHhHHHHHHHHHHHHHhCCC-----------ChHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008818 134 SREEKVSSLKTGLVHVARKMPK-----------NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186 (552)
Q Consensus 134 ~~~~~~~~a~~~l~~~l~~~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (552)
...+-++...+.|+.++..-|. ...++..+|.+|+..|++++|+...++++..
T Consensus 169 t~~evy~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 169 SVSEVYAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp EHHHHHHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4466777777777777765543 2358899999999999999999999999874
No 334
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=20.34 E-value=2.5e+02 Score=20.25 Aligned_cols=73 Identities=14% Similarity=-0.006 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 309 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (552)
++|..+. ..+...+....+-..+...++++|+|++|....+..- .++.--.++.+-.+.|-.+++...+.+.-
T Consensus 23 qEA~tIA-dwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 23 EEALCIA-EWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4554333 3444455544445556777899999999987655422 56666677888899999999888775543
No 335
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.04 E-value=2.5e+02 Score=20.24 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008818 231 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 308 (552)
Q Consensus 231 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (552)
++|..+. ..+...+....+-..+...++++|+|++|....+..- .++.--.++.+-.+.|-.+++...+.+.
T Consensus 24 qEA~tIA-dwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 24 EEANCIA-EWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4554333 3444455544445556777899999999998776532 4556666778888999988888777443
Done!