BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008819
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 140/495 (28%), Positives = 229/495 (46%), Gaps = 38/495 (7%)
Query: 73 NAAKQSFLKIPEALKEMPKMNPEGIYVNKNLRLDNIQVYGFDYDYTLAHYSS-NLQSLIY 131
NAA ALK+ + ++VN++L ++ I+ +GFD DYTLA Y S +SL +
Sbjct: 30 NAADMPANMDKHALKKYRREAYHRVFVNRSLAMEKIKCFGFDMDYTLAVYKSPEYESLGF 89
Query: 132 DLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRK 191
+L E +V+ YP+ +SF YD FP RGL +D G LLK+D +G++ C G
Sbjct: 90 ELTVERLVS-IGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLV--CAHGFNF 146
Query: 192 LSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV-------------D 238
+ E E Y + I RD L F E L+A +V +F D
Sbjct: 147 IRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKD 206
Query: 239 AKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLF 298
L +++DV A+ VH +G + + + +Y+VK+G++ + ++E G K+F
Sbjct: 207 GDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVF 265
Query: 299 LLTNSPYYFVDGGMRFMLEDSTGYTDS-----WRELFDVVIAQANKPDFYTSDHPFRCYD 353
L TNS Y + D M ++ + G W+ FD+++ A KP F+ R D
Sbjct: 266 LATNSDYKYTDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVD 325
Query: 354 TEKDTLAFTKVDAFIPNKIYYH-GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGW 411
T+ L + + I Y G + + G +++Y GDH+F D L+ + GW
Sbjct: 326 TKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGW 385
Query: 412 RTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAEL 469
RT +I EL E+ + D++ FE Q+ + EL L ++ + Q + ++
Sbjct: 386 RTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKV 445
Query: 470 NEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWL 529
+ MM +F +++ FA + RYAD+Y + N LLY P ++L
Sbjct: 446 THDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFIN-LLYYPFSYL 495
Query: 530 HVPFDIKIMPHHVKV 544
+ +MPH V
Sbjct: 496 FRAAHV-LMPHESTV 509
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 139/495 (28%), Positives = 229/495 (46%), Gaps = 38/495 (7%)
Query: 73 NAAKQSFLKIPEALKEMPKMNPEGIYVNKNLRLDNIQVYGFDYDYTLAHYSS-NLQSLIY 131
NAA ALK+ + ++VN++L ++ I+ +GF+ DYTLA Y S +SL +
Sbjct: 29 NAADMPANMDKHALKKYRREAYHRVFVNRSLAMEKIKCFGFNMDYTLAVYKSPEYESLGF 88
Query: 132 DLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRK 191
+L E +V+ YP+ +SF YD FP RGL +D G LLK+D +G++ C G
Sbjct: 89 ELTVERLVS-IGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLV--CAHGFNF 145
Query: 192 LSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV-------------D 238
+ E E Y + I RD L F E L+A +V +F D
Sbjct: 146 IRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKD 205
Query: 239 AKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLF 298
L +++DV A+ VH +G + + + +Y+VK+G++ + ++E G K+F
Sbjct: 206 GDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVF 264
Query: 299 LLTNSPYYFVDGGMRFMLEDSTGYTDS-----WRELFDVVIAQANKPDFYTSDHPFRCYD 353
L TNS Y + D M ++ + G W+ FD+++ A KP F+ R D
Sbjct: 265 LATNSDYKYTDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVD 324
Query: 354 TEKDTLAFTKVDAFIPNKIYYH-GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGW 411
T+ L + + I Y G + + G +++Y GDH+F D L+ + GW
Sbjct: 325 TKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGW 384
Query: 412 RTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAEL 469
RT +I EL E+ + D++ FE Q+ + EL L ++ + Q + ++
Sbjct: 385 RTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKV 444
Query: 470 NEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWL 529
+ MM +F +++ FA + RYAD+Y + N LLY P ++L
Sbjct: 445 THDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFIN-LLYYPFSYL 494
Query: 530 HVPFDIKIMPHHVKV 544
+ +MPH V
Sbjct: 495 FRAAHV-LMPHESTV 508
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 139/495 (28%), Positives = 229/495 (46%), Gaps = 38/495 (7%)
Query: 73 NAAKQSFLKIPEALKEMPKMNPEGIYVNKNLRLDNIQVYGFDYDYTLAHYSS-NLQSLIY 131
NAA ALK+ + ++VN++L ++ I+ +GF+ DYTLA Y S +SL +
Sbjct: 30 NAADMPANMDKHALKKYRREAYHRVFVNRSLAMEKIKCFGFNMDYTLAVYKSPEYESLGF 89
Query: 132 DLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRK 191
+L E +V+ YP+ +SF YD FP RGL +D G LLK+D +G++ C G
Sbjct: 90 ELTVERLVS-IGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLV--CAHGFNF 146
Query: 192 LSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV-------------D 238
+ E E Y + I RD L F E L+A +V +F D
Sbjct: 147 IRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKD 206
Query: 239 AKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLF 298
L +++DV A+ VH +G + + + +Y+VK+G++ + ++E G K+F
Sbjct: 207 GDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVF 265
Query: 299 LLTNSPYYFVDGGMRFMLEDSTGYTDS-----WRELFDVVIAQANKPDFYTSDHPFRCYD 353
L TNS Y + D M ++ + G W+ FD+++ A KP F+ R D
Sbjct: 266 LATNSDYKYTDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVD 325
Query: 354 TEKDTLAFTKVDAFIPNKIYYH-GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGW 411
T+ L + + I Y G + + G +++Y GDH+F D L+ + GW
Sbjct: 326 TKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGW 385
Query: 412 RTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAEL 469
RT +I EL E+ + D++ FE Q+ + EL L ++ + Q + ++
Sbjct: 386 RTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKV 445
Query: 470 NEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWL 529
+ MM +F +++ FA + RYAD+Y + N LLY P ++L
Sbjct: 446 THDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFIN-LLYYPFSYL 495
Query: 530 HVPFDIKIMPHHVKV 544
+ +MPH V
Sbjct: 496 FRAAHV-LMPHESTV 509
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/495 (28%), Positives = 228/495 (46%), Gaps = 38/495 (7%)
Query: 73 NAAKQSFLKIPEALKEMPKMNPEGIYVNKNLRLDNIQVYGFDYDYTLAHYSS-NLQSLIY 131
NAA ALK+ + ++VN++L ++ I+ +GF DYTLA Y S +SL +
Sbjct: 30 NAADMPANMDKHALKKYRREAYHRVFVNRSLAMEKIKCFGFXMDYTLAVYKSPEYESLGF 89
Query: 132 DLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRK 191
+L E +V+ YP+ +SF YD FP RGL +D G LLK+D +G++ C G
Sbjct: 90 ELTVERLVS-IGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLV--CAHGFNF 146
Query: 192 LSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV-------------D 238
+ E E Y + I RD L F E L+A +V +F D
Sbjct: 147 IRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKD 206
Query: 239 AKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLF 298
L +++DV A+ VH +G + + + +Y+VK+G++ + ++E G K+F
Sbjct: 207 GDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVF 265
Query: 299 LLTNSPYYFVDGGMRFMLEDSTGYTDS-----WRELFDVVIAQANKPDFYTSDHPFRCYD 353
L TNS Y + D M ++ + G W+ FD+++ A KP F+ R D
Sbjct: 266 LATNSDYKYTDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVD 325
Query: 354 TEKDTLAFTKVDAFIPNKIYYH-GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGW 411
T+ L + + I Y G + + G +++Y GDH+F D L+ + GW
Sbjct: 326 TKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGW 385
Query: 412 RTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAEL 469
RT +I EL E+ + D++ FE Q+ + EL L ++ + Q + ++
Sbjct: 386 RTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKV 445
Query: 470 NEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWL 529
+ MM +F +++ FA + RYAD+Y + N LLY P ++L
Sbjct: 446 THDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFIN-LLYYPFSYL 495
Query: 530 HVPFDIKIMPHHVKV 544
+ +MPH V
Sbjct: 496 FRAAHV-LMPHESTV 509
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 129/473 (27%), Positives = 222/473 (46%), Gaps = 26/473 (5%)
Query: 92 MNPEGIYVNKNLRLDNIQVYGFDYDYTLAHYSS-NLQSLIYDLAKEHMVNEFRYPEVCIS 150
M+ ++VN+ + + I++ G D D+TL Y+S N +SL+YDL KE + F YPE
Sbjct: 1 MDTHKVFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKK 60
Query: 151 FKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQ 210
FK++ + IRGL D + G +LKL +G+I Y G +++S + +IY + ++
Sbjct: 61 FKFNFDDAIRGLVIDSKNGNILKLSRYGAIRL--SYHGTKQISFSDQKKIYRSIYVDLGD 118
Query: 211 ARGLVGLMDF---FCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHR 267
+ F FC L+ D+ D + A I +DV + VH G +
Sbjct: 119 PNYMAIDTSFSIAFCILYGQLV-DLKDTNPDKMPSYQA--IAQDVQYCVDKVHSDGTLKN 175
Query: 268 GILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWR 327
I+ + +Y+++ +V++ +K GKK+F+LTNS Y + + + L + W+
Sbjct: 176 IIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQ 235
Query: 328 ELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKW 387
LF+ VI ANKP F+ + F + E T+ T V I +Y G K F +
Sbjct: 236 GLFEFVITLANKPRFFYDNLRFLSVNPENGTM--TNVHGPIVPGVYQGGNAKKFTEDLGV 293
Query: 388 NGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESEI--RIQNDETYRFEQAKFHIIQE 444
G E++Y GDH++ D LR WRTA ++ EL EI +I+ + I +E
Sbjct: 294 GGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIGEAMAIKKE 353
Query: 445 LLGKLHATVANS---------QRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTD 495
L K S Q QL ++ ++ + + + +N + F
Sbjct: 354 LEQKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRA- 412
Query: 496 TGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHHVKVPSSL 548
+ES FAY + R+A +Y K + L + P + + +++ H + + ++L
Sbjct: 413 GAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRA--NRRLLAHDIDIAAAL 463
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 127/467 (27%), Positives = 217/467 (46%), Gaps = 24/467 (5%)
Query: 97 IYVNKNLRLDNIQVYGFDYDYTLAHYSS-NLQSLIYDLAKEHMVNEFRYPEVCISFKYDP 155
++VN+ + I++ G D D+TL Y+S N +SL+YDL KE + F YPE FK++
Sbjct: 6 VFVNRIINXRKIKLIGLDXDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFNF 65
Query: 156 NFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQARGLV 215
+ IRGL D + G +LKL +G+I Y G +++S + +IY R I D
Sbjct: 66 DDAIRGLVIDSKNGNILKLSRYGAIRL--SYHGTKQISFSDQKKIY--RSIYVDLGDPNY 121
Query: 216 GLMDFFCFTEACLIADIVQYFVDAKLEFDASY--IYEDVNRAIQHVHRRGLVHRGILSDP 273
+D C++ + D + SY I +DV + VH G + I+ +
Sbjct: 122 XAIDTSFSIAFCILYGQLVDLKDTNPDKXPSYQAIAQDVQYCVDKVHSDGTLKNIIIKNL 181
Query: 274 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVV 333
+Y+++ +V++ +K GKK+F+LTNS Y + + + L + W+ LF+ V
Sbjct: 182 KKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEFV 241
Query: 334 IAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVI 393
I ANKP F+ + F + E T T V I +Y G K F + G E++
Sbjct: 242 ITLANKPRFFYDNLRFLSVNPENGTX--TNVHGPIVPGVYQGGNAKKFTEDLGVGGDEIL 299
Query: 394 YFGDHLFSD-LRGPSKAGWRTAAIIHELESEIRIQ------NDETYRFEQAKFHIIQELL 446
Y GDH++ D LR WRTA ++ EL EI Q + K + Q+ +
Sbjct: 300 YIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIGEAXAIKKELEQKYV 359
Query: 447 GKLHATVANS-----QRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESA 501
++ S Q QL ++ ++ + + + +N + F +ES
Sbjct: 360 DLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRA-GAEESY 418
Query: 502 FAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHHVKVPSSL 548
FAY + R+A +Y K + L + P + + +++ H + + ++L
Sbjct: 419 FAYQVDRFACIYXEKLSDLLEHSPXTYFRA--NRRLLAHDIDIAAAL 463
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 232 IVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 269
I +F+D E +YI + V +A+ ++H G VHR +
Sbjct: 117 ICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSV 154
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2
Length = 229
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 231 DIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLV--KNGQVLQFVK 288
+I+Q +DA ++FDA DV A+ R L RG+L +P V G++++ +K
Sbjct: 99 EIIQKILDAWMDFDAVVATPDVMGAVGSKLGRILAPRGLLPNPKAGTVGFNIGEIIREIK 158
Query: 289 MLR 291
R
Sbjct: 159 AGR 161
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 232 IVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 269
I +F+D E +YI + V +A+ ++H G VHR +
Sbjct: 101 ICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSV 138
>pdb|2PLY|A Chain A, Structure Of The Mrna Binding Fragment Of Elongation
Factor Selb In Complex With Secis Rna.
pdb|2PLY|B Chain B, Structure Of The Mrna Binding Fragment Of Elongation
Factor Selb In Complex With Secis Rna
Length = 258
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 122 YSSNLQSLIYDLAKEHMVNEFRYP---EVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFG 178
+S + L+ DL ++ V+ ++ P EV SF DP+ L+Y ++G L+K++
Sbjct: 135 FSETQKKLLKDLEDKYRVSRWQPPWVKEVAGSFNLDPSELEELLHYLVREGVLVKIN--- 191
Query: 179 SIEPDGCYFGRRKL--SRKEIAEIYGTRHIGRDQARGLVG 216
D Y+ R+ L +R+ I + T G +AR +G
Sbjct: 192 ----DEFYWHRQALGEAREVIKNLASTGPFGLAEARDALG 227
>pdb|2UWM|A Chain A, C-Terminal Domain(Wh2-Wh4) Of Elongation Factor Selb In
Complex With Secis Rna
pdb|2UWM|B Chain B, C-Terminal Domain(Wh2-Wh4) Of Elongation Factor Selb In
Complex With Secis Rna
Length = 258
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 122 YSSNLQSLIYDLAKEHMVNEFRYP---EVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFG 178
+S + L+ DL ++ V+ ++ P EV SF DP+ L+Y ++G L+K++
Sbjct: 135 FSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIN--- 191
Query: 179 SIEPDGCYFGRRKL--SRKEIAEIYGTRHIGRDQARGLVG 216
D Y+ R+ L +R+ I + T G +AR +G
Sbjct: 192 ----DEFYWHRQALGEAREVIKNLASTGPFGLAEARDALG 227
>pdb|1LVA|A Chain A, Crystal Structure Of A C-Terminal Fragment Of Moorella
Thermoacetica Elongation Factor Selb
Length = 258
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 122 YSSNLQSLIYDLAKEHMVNEFRYP---EVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFG 178
+S + L+ DL ++ V+ ++ P EV SF DP+ L+Y ++G L+K++
Sbjct: 135 FSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIN--- 191
Query: 179 SIEPDGCYFGRRKL--SRKEIAEIYGTRHIGRDQARGLVG 216
D Y+ R+ L +R+ I + T G +AR +G
Sbjct: 192 ----DEFYWHRQALGEAREVIKNLASTGPFGLAEARDALG 227
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 19/167 (11%)
Query: 197 IAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKL-EFDASYIYEDVNRA 255
+ E+Y + +G + L LM+F + + DIV +L E + + E V +A
Sbjct: 104 VVEMYKSYLVGEE----LWVLMEFL---QGGALTDIVS---QVRLNEEQIATVCEAVLQA 153
Query: 256 IQHVHRRGLVHRGILSDPNRYLVKNGQV----LQFVKMLREKGKKLFLLTNSPYYFVDGG 311
+ ++H +G++HR I SD + L +G+V F + + K L +PY+
Sbjct: 154 LAYLHAQGVIHRDIKSD-SILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEV 212
Query: 312 MRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDT 358
+ L + D W L +VI + Y SD P + +D+
Sbjct: 213 ISRSLYATE--VDIW-SLGIMVIEMVDGEPPYFSDSPVQAMKRLRDS 256
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 189 RRKLSRKEIAEI-YGTRHIGRDQARGLVGLMDFFCFTEACLIA--DIVQYFVDAKLEFDA 245
KL++K+I I G ++ +Q + ++ + +T+ L+ D +++ +D + A
Sbjct: 1 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLD-DMSITA 59
Query: 246 ---SYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTN 302
+Y +DV RAI+ +G +DPN + Q+ + ++KG L N
Sbjct: 60 NGKTYASDDVKRAIE----KGT--NDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVN 113
Query: 303 SP 304
SP
Sbjct: 114 SP 115
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 189 RRKLSRKEIAEI-YGTRHIGRDQARGLVGLMDFFCFTEACLIA--DIVQYFVDAKLEFDA 245
KL++K+I I G ++ +Q + ++ + +T+ L+ D +++ +D + A
Sbjct: 1 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLD-DMSITA 59
Query: 246 ---SYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTN 302
+Y +DV RAI+ +G +DPN + Q+ + ++KG L N
Sbjct: 60 NGKTYASDDVKRAIE----KGT--NDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVN 113
Query: 303 SP 304
SP
Sbjct: 114 SP 115
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 189 RRKLSRKEIAEI-YGTRHIGRDQARGLVGLMDFFCFTEACLIA--DIVQYFVDAKLEFDA 245
KL++K+I I G ++ +Q + ++ + +T+ L+ D +++ +D + A
Sbjct: 21 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLD-DMSITA 79
Query: 246 ---SYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTN 302
+Y +DV RAI+ +G +DPN + Q+ + ++KG L N
Sbjct: 80 NGKTYASDDVKRAIE----KGT--NDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVN 133
Query: 303 SP 304
SP
Sbjct: 134 SP 135
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 213 GLVGLMDFFCFTEACLIA--------DIVQYFVDAKL--EFDASYIYEDVNRAIQHVHRR 262
G++ L+D+F E ++ D+ Y + E + + V AIQH H R
Sbjct: 99 GVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR 158
Query: 263 GLVHRGI 269
G+VHR I
Sbjct: 159 GVVHRDI 165
>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase-Activated Protein Kinase 3
(Mk3)-Inhibitor Complex
pdb|3FXW|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase- Activated Protein Kinase 3INHIBITOR 2
COMPLEX
Length = 336
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 197 IAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAI 256
I ++Y H G+ R L+ +M+ C L + I + A E +A+ I D+ AI
Sbjct: 87 ILDVYENMHHGK---RCLLIIME--CMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAI 141
Query: 257 QHVHRRGLVHRGI 269
Q +H + HR +
Sbjct: 142 QFLHSHNIAHRDV 154
>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b
pdb|3SHE|A Chain A, Novel Atp-Competitive Mk2 Inhibitors With Potent
Biochemical And Cell- Based Activity Throughout The
Series
Length = 317
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 197 IAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAI 256
I ++Y H G+ R L+ +M+ C L + I + A E +A+ I D+ AI
Sbjct: 68 ILDVYENMHHGK---RCLLIIME--CMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAI 122
Query: 257 QHVHRRGLVHRGI 269
Q +H + HR +
Sbjct: 123 QFLHSHNIAHRDV 135
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 219 DFFCFTEACLIADIVQYFVDAKL--EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRY 276
D + E C ++ + V ++ E DA+ I +DV A+ + H+ + HR + + +
Sbjct: 97 DIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLF 156
Query: 277 LVKNG----QVLQFVKMLREK-GKKLFLLTNSPYY 306
L + +++ F R K GK + +PYY
Sbjct: 157 LTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYY 191
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 219 DFFCFTEACLIADIVQYFVDAKL--EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRY 276
D + E C ++ + V ++ E DA+ I +DV A+ + H+ + HR + + +
Sbjct: 80 DIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLF 139
Query: 277 LVKNG----QVLQFVKMLREK-GKKLFLLTNSPYY 306
L + +++ F R K GK + +PYY
Sbjct: 140 LTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYY 174
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 223 FTEACLIADIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQ 282
F E + DIV + E + + V RA+ ++H +G++HR I SD + L +G+
Sbjct: 123 FLEGGALTDIVTH--TRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSD-SILLTSDGR 179
Query: 283 V----LQFVKMLREKGKKLFLLTNSPYYF 307
+ F + ++ K L +PY+
Sbjct: 180 IKLSDFGFCAQVSKEVPKRKXLVGTPYWM 208
>pdb|1WSU|A Chain A, C-Terminal Domain Of Elongation Factor Selb Complexed With
Secis Rna
pdb|1WSU|B Chain B, C-Terminal Domain Of Elongation Factor Selb Complexed With
Secis Rna
pdb|1WSU|C Chain C, C-Terminal Domain Of Elongation Factor Selb Complexed With
Secis Rna
pdb|1WSU|D Chain D, C-Terminal Domain Of Elongation Factor Selb Complexed With
Secis Rna
Length = 124
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 123 SSNLQSLIYDLAKEHMVNEFRYP---EVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGS 179
S + L+ DL ++ V+ ++ P EV SF DP+ L+Y ++G L+K++
Sbjct: 2 SETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIN---- 57
Query: 180 IEPDGCYFGRRKL--SRKEIAEIYGTRHIGRDQARGLVG 216
D Y+ R+ L +R+ I + T G +AR +G
Sbjct: 58 ---DEFYWHRQALGEAREVIKNLASTGPFGLAEARDALG 93
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 191 KLSRKEIAEI-YGTRHIGRDQARGLVGLMDFFCFTEACLIA--DIVQYFVD--AKLEFDA 245
KL++K+I I G ++ +Q + ++ + +T+ L+ D +++ +D +
Sbjct: 8 KLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFXLDDXSITANGK 67
Query: 246 SYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSP 304
+Y +DV RAI+ +G +DPN + Q + ++KG L NSP
Sbjct: 68 TYASDDVKRAIE----KGT--NDYYNDPNGNHLTESQXTDLINYAKDKGIGLIPTVNSP 120
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 242 EFDASYIYEDVNRAIQHVHRRGLVHRGI 269
E +ASYI + A+ H+H G+VHR +
Sbjct: 105 ETEASYIMRKLVSAVSHMHDVGVVHRDL 132
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 242 EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLV--KNGQVL 284
E DAS + + V A++++H G+VHR + + YL +N +++
Sbjct: 105 EKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIM 149
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 220 FFCFTEACLIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 269
F T L DIV +Y+ +A DAS+ + + A+ H H+ G+VHR +
Sbjct: 89 FDLVTGGELFEDIVAREYYSEA----DASHCIQQILEAVLHCHQMGVVHRNL 136
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 220 FFCFTEACLIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 269
F T L DIV +Y+ +A DAS+ + + A+ H H+ G+VHR +
Sbjct: 100 FDLVTGGELFEDIVAREYYSEA----DASHCIQQILEAVLHCHQMGVVHRDL 147
>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain
Length = 316
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 242 EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKM 289
E +AS + +DV A+ +H +G+ HR + P L ++ + VK+
Sbjct: 110 ELEASVVVQDVASALDFLHNKGIAHRDL--KPENILCEHPNQVSPVKI 155
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 228 LIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 269
L DIV +Y+ +A DAS+ + + A+ H H+ G+VHR +
Sbjct: 90 LFEDIVAREYYSEA----DASHCIQQILEAVLHCHQMGVVHRDL 129
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 242 EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKM 289
E +AS + +DV A+ +H +G+ HR + P L ++ + VK+
Sbjct: 110 ELEASVVVQDVASALDFLHNKGIAHRDL--KPENILCEHPNQVSPVKI 155
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 220 FFCFTEACLIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 269
F T L DIV +Y+ +A DAS+ + + ++ H H G+VHR +
Sbjct: 82 FDLVTGGELFEDIVAREYYSEA----DASHCIQQILESVNHCHLNGIVHRDL 129
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 28/88 (31%)
Query: 379 KSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRIQ----------- 427
+ +++T+ ++ F + L D+R P + ++ E+E+E++I
Sbjct: 124 RKLMEVTRLRDTPILTFMNKLDRDIRDPME-------LLDEVENELKIGCAPITWPIGCG 176
Query: 428 ----------NDETYRFEQAKFHIIQEL 445
DETY ++ K H IQE+
Sbjct: 177 KLFKGVYHLYKDETYLYQSGKGHTIQEV 204
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 28/88 (31%)
Query: 379 KSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRIQ----------- 427
+ +++T+ ++ F + L D+R P + ++ E+E+E++I
Sbjct: 124 RKLMEVTRLRDTPILTFMNKLDRDIRDPME-------LLDEVENELKIGCAPITWPIGCG 176
Query: 428 ----------NDETYRFEQAKFHIIQEL 445
DETY ++ K H IQE+
Sbjct: 177 KLFKGVYHLYKDETYLYQSGKGHTIQEV 204
>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii
Reveals Its Similarity In The Active Site To Kynurenine
Aminotransferases
Length = 370
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 283 VLQFVKMLREKGKKLFLLT------NSPYYFVDGGMRFMLEDSTGYTDS 325
+L + L +GKK+ L N+P VD G++ + E T YTDS
Sbjct: 17 ILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDS 65
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 245 ASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQV----LQFVKMLREKGKKLFLL 300
A ++E + + + ++H + L+HR L N +LV QV V L+ GK+
Sbjct: 138 ALELFEQITKGVDYIHSKKLIHRD-LKPSNIFLVDTKQVKIGDFGLVTSLKNDGKR---- 192
Query: 301 TNSPYYFVDGGMRFMLEDSTGYTDSWREL 329
T S G +R+M + D +E+
Sbjct: 193 TRSK-----GTLRYMSPEQISSQDYGKEV 216
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 220 FFCFTEACLIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 269
F T L DIV +Y+ +A DAS+ + + ++ H H G+VHR +
Sbjct: 82 FDLVTGGELFEDIVAREYYSEA----DASHCIQQILESVNHCHLNGIVHRDL 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,952,604
Number of Sequences: 62578
Number of extensions: 731813
Number of successful extensions: 2170
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2112
Number of HSP's gapped (non-prelim): 48
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)