Query 008819
Match_columns 552
No_of_seqs 227 out of 594
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 2E-136 4E-141 1098.5 29.1 443 97-546 1-448 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 7E-134 1E-138 1019.8 25.1 476 52-545 7-495 (510)
3 TIGR02244 HAD-IG-Ncltidse HAD 100.0 9E-101 2E-105 798.4 30.6 331 97-430 1-336 (343)
4 KOG2469 IMP-GMP specific 5'-nu 100.0 4.7E-89 1E-93 707.4 24.1 408 91-515 10-424 (424)
5 TIGR02253 CTE7 HAD superfamily 99.7 5.3E-16 1.2E-20 150.6 13.2 107 275-419 91-197 (221)
6 TIGR01422 phosphonatase phosph 99.6 4.1E-15 8.8E-20 148.5 13.7 105 276-419 97-203 (253)
7 PLN02770 haloacid dehalogenase 99.6 5.8E-15 1.3E-19 147.9 14.2 104 276-418 106-209 (248)
8 PRK13226 phosphoglycolate phos 99.6 1.5E-14 3.3E-19 143.0 14.2 104 276-418 93-196 (229)
9 PRK10725 fructose-1-P/6-phosph 99.6 1.2E-14 2.7E-19 137.6 13.0 100 277-417 87-186 (188)
10 PLN03243 haloacid dehalogenase 99.6 1.8E-14 3.9E-19 146.2 13.1 102 277-417 108-209 (260)
11 PRK13288 pyrophosphatase PpaX; 99.6 2.6E-14 5.7E-19 138.9 13.5 105 276-419 80-184 (214)
12 TIGR01449 PGP_bact 2-phosphogl 99.6 3.5E-14 7.5E-19 136.9 13.8 104 275-417 82-185 (213)
13 PRK10826 2-deoxyglucose-6-phos 99.6 6.8E-14 1.5E-18 136.9 15.6 104 277-419 91-194 (222)
14 PRK13478 phosphonoacetaldehyde 99.6 4.2E-14 9E-19 142.8 14.2 105 276-419 99-205 (267)
15 TIGR03351 PhnX-like phosphonat 99.6 4E-14 8.7E-19 137.8 13.3 105 277-420 86-194 (220)
16 PLN02575 haloacid dehalogenase 99.5 5.4E-14 1.2E-18 149.6 13.2 103 277-418 215-317 (381)
17 PLN02940 riboflavin kinase 99.5 1E-13 2.2E-18 147.9 14.1 104 277-418 92-195 (382)
18 PRK10563 6-phosphogluconate ph 99.5 2.1E-13 4.5E-18 133.0 14.4 101 275-417 85-186 (221)
19 TIGR02252 DREG-2 REG-2-like, H 99.5 1.8E-13 3.9E-18 131.6 13.3 99 278-415 105-203 (203)
20 COG0637 Predicted phosphatase/ 99.5 1.6E-13 3.5E-18 135.8 12.8 103 277-418 85-187 (221)
21 TIGR01990 bPGM beta-phosphoglu 99.5 4E-13 8.8E-18 126.6 14.1 99 277-416 86-184 (185)
22 PRK11587 putative phosphatase; 99.5 8.9E-13 1.9E-17 129.0 15.4 103 276-418 81-183 (218)
23 COG0546 Gph Predicted phosphat 99.5 6.5E-13 1.4E-17 130.8 14.0 106 276-420 87-192 (220)
24 TIGR02009 PGMB-YQAB-SF beta-ph 99.5 6.7E-13 1.5E-17 125.1 12.4 100 276-416 86-185 (185)
25 PRK13222 phosphoglycolate phos 99.4 7.9E-13 1.7E-17 128.5 12.9 103 277-418 92-194 (226)
26 PRK10748 flavin mononucleotide 99.4 8.3E-13 1.8E-17 131.4 12.9 99 277-419 112-210 (238)
27 PRK13223 phosphoglycolate phos 99.4 1.9E-12 4.2E-17 131.8 15.5 104 276-418 99-202 (272)
28 PRK13225 phosphoglycolate phos 99.4 2E-12 4.2E-17 132.2 14.4 103 276-420 140-242 (273)
29 PLN02779 haloacid dehalogenase 99.4 2.8E-12 6.1E-17 131.7 15.3 106 277-419 143-248 (286)
30 TIGR02254 YjjG/YfnB HAD superf 99.4 3.2E-12 6.9E-17 123.8 13.6 104 277-419 96-200 (224)
31 COG1011 Predicted hydrolase (H 99.4 6.5E-12 1.4E-16 122.1 14.0 107 276-421 97-203 (229)
32 PF13419 HAD_2: Haloacid dehal 99.3 2.3E-12 4.9E-17 118.0 6.9 104 274-416 73-176 (176)
33 TIGR01428 HAD_type_II 2-haloal 99.3 3.4E-12 7.4E-17 122.5 7.0 103 278-419 92-194 (198)
34 PLN02919 haloacid dehalogenase 99.3 4.7E-11 1E-15 141.9 16.6 103 279-420 162-265 (1057)
35 TIGR01509 HAD-SF-IA-v3 haloaci 99.3 1.5E-11 3.2E-16 115.2 9.5 100 277-416 84-183 (183)
36 PRK09456 ?-D-glucose-1-phospha 99.3 6.6E-12 1.4E-16 121.2 6.1 103 278-418 84-186 (199)
37 PRK14988 GMP/IMP nucleotidase; 99.2 7.9E-12 1.7E-16 123.7 6.5 102 277-417 92-194 (224)
38 PRK06698 bifunctional 5'-methy 99.2 4.4E-11 9.5E-16 130.3 12.8 101 277-419 329-429 (459)
39 COG2179 Predicted hydrolase of 99.2 1.9E-11 4.2E-16 115.7 8.5 98 279-423 47-144 (175)
40 TIGR01548 HAD-SF-IA-hyp1 haloa 99.2 1.6E-10 3.5E-15 111.3 14.0 89 281-409 109-197 (197)
41 PRK09449 dUMP phosphatase; Pro 99.2 1.6E-11 3.5E-16 119.8 7.2 103 277-418 94-197 (224)
42 TIGR01454 AHBA_synth_RP 3-amin 99.2 2.2E-11 4.8E-16 117.6 7.4 104 276-418 73-176 (205)
43 KOG3085 Predicted hydrolase (H 99.2 1.6E-10 3.6E-15 115.8 11.2 97 282-417 117-213 (237)
44 TIGR02247 HAD-1A3-hyp Epoxide 99.1 4.9E-11 1.1E-15 115.6 5.9 105 277-418 93-197 (211)
45 TIGR01662 HAD-SF-IIIA HAD-supe 99.1 1.2E-10 2.5E-15 105.1 7.0 101 274-418 21-132 (132)
46 TIGR01993 Pyr-5-nucltdase pyri 99.1 1.4E-10 3.1E-15 110.2 5.5 99 276-416 82-184 (184)
47 PLN02811 hydrolase 99.0 3.2E-10 7E-15 111.3 7.4 106 277-419 77-186 (220)
48 TIGR01691 enolase-ppase 2,3-di 99.0 6.3E-10 1.4E-14 110.7 8.3 107 274-420 91-199 (220)
49 KOG3109 Haloacid dehalogenase- 99.0 5.8E-09 1.2E-13 102.8 14.2 193 107-420 14-208 (244)
50 PHA02597 30.2 hypothetical pro 99.0 8.5E-10 1.8E-14 106.0 8.3 102 277-419 73-176 (197)
51 TIGR01685 MDP-1 magnesium-depe 99.0 3.8E-10 8.2E-15 108.6 4.3 105 275-418 42-158 (174)
52 TIGR01261 hisB_Nterm histidino 98.9 1.8E-09 3.9E-14 102.4 7.0 112 276-423 27-154 (161)
53 TIGR01656 Histidinol-ppas hist 98.9 9.3E-10 2E-14 101.9 4.6 104 278-417 27-145 (147)
54 TIGR01668 YqeG_hyp_ppase HAD s 98.9 2.2E-09 4.8E-14 102.1 6.9 97 277-420 42-139 (170)
55 PRK06769 hypothetical protein; 98.9 1.3E-09 2.8E-14 104.0 5.2 105 277-420 27-140 (173)
56 TIGR00213 GmhB_yaeD D,D-heptos 98.9 3.9E-09 8.5E-14 100.5 7.1 114 276-418 24-152 (176)
57 PRK08942 D,D-heptose 1,7-bisph 98.8 7.1E-09 1.5E-13 98.9 7.8 107 277-419 28-149 (181)
58 TIGR01549 HAD-SF-IA-v1 haloaci 98.8 5.7E-09 1.2E-13 95.9 5.8 89 280-410 66-154 (154)
59 KOG2914 Predicted haloacid-hal 98.8 4.8E-08 1E-12 97.5 12.5 103 280-418 94-197 (222)
60 TIGR01664 DNA-3'-Pase DNA 3'-p 98.7 2.3E-08 4.9E-13 95.2 6.2 104 271-414 35-159 (166)
61 smart00577 CPDc catalytic doma 98.7 8.4E-08 1.8E-12 89.3 8.5 97 274-412 41-137 (148)
62 cd01427 HAD_like Haloacid deha 98.7 3.4E-08 7.4E-13 86.0 5.5 117 276-416 22-139 (139)
63 TIGR01681 HAD-SF-IIIC HAD-supe 98.6 5.5E-08 1.2E-12 88.5 4.4 90 278-405 29-123 (128)
64 TIGR01672 AphA HAD superfamily 98.6 2.6E-07 5.7E-12 93.1 9.7 107 266-418 102-212 (237)
65 PRK05446 imidazole glycerol-ph 98.5 3.1E-07 6.7E-12 97.6 8.2 106 277-418 29-149 (354)
66 TIGR01493 HAD-SF-IA-v2 Haloaci 98.5 4E-08 8.7E-13 92.2 1.0 86 277-408 89-174 (175)
67 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.5 4.4E-07 9.5E-12 86.5 8.1 110 278-416 80-189 (201)
68 PHA02530 pseT polynucleotide k 98.4 2.4E-07 5.2E-12 94.8 5.3 109 278-418 187-297 (300)
69 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.4 4.8E-08 1.1E-12 98.9 0.1 104 280-419 122-226 (257)
70 PF09419 PGP_phosphatase: Mito 98.4 1.3E-06 2.9E-11 83.7 9.4 92 279-418 60-165 (168)
71 PRK11009 aphA acid phosphatase 98.4 2E-06 4.4E-11 86.7 10.1 108 265-418 101-212 (237)
72 PRK11133 serB phosphoserine ph 98.3 2.4E-06 5.3E-11 89.7 10.9 109 277-414 180-288 (322)
73 TIGR00338 serB phosphoserine p 98.3 8.1E-07 1.8E-11 86.5 6.0 108 277-413 84-191 (219)
74 TIGR01452 PGP_euk phosphoglyco 98.3 1.1E-07 2.3E-12 97.3 -0.4 104 280-419 145-249 (279)
75 PRK09552 mtnX 2-hydroxy-3-keto 98.3 2.5E-06 5.4E-11 83.8 8.4 104 277-411 73-181 (219)
76 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.2 4.1E-07 8.8E-12 90.9 1.5 101 280-417 140-241 (242)
77 TIGR01489 DKMTPPase-SF 2,3-dik 98.1 1.7E-05 3.6E-10 74.7 10.6 110 277-410 71-182 (188)
78 PTZ00445 p36-lilke protein; Pr 98.1 3E-06 6.5E-11 83.9 5.2 143 248-418 46-206 (219)
79 TIGR02726 phenyl_P_delta pheny 98.1 2.1E-06 4.7E-11 82.3 3.4 81 287-415 43-123 (169)
80 TIGR03333 salvage_mtnX 2-hydro 98.0 2.3E-05 5E-10 76.8 9.3 102 276-411 68-177 (214)
81 PRK11590 hypothetical protein; 98.0 0.00013 2.7E-09 71.7 14.5 96 277-404 94-190 (211)
82 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.0 1.4E-05 3E-10 76.7 6.7 110 279-418 88-198 (202)
83 TIGR01686 FkbH FkbH-like domai 98.0 9.2E-06 2E-10 84.9 5.8 91 279-409 32-122 (320)
84 TIGR01670 YrbI-phosphatas 3-de 98.0 5.8E-06 1.3E-10 77.5 3.6 85 286-419 36-120 (154)
85 PF00702 Hydrolase: haloacid d 97.9 8.7E-06 1.9E-10 77.8 4.4 86 279-410 128-215 (215)
86 PLN02954 phosphoserine phospha 97.9 5.1E-05 1.1E-09 74.1 9.6 112 278-417 84-196 (224)
87 COG0647 NagD Predicted sugar p 97.9 6.5E-05 1.4E-09 77.3 10.5 44 378-421 196-239 (269)
88 PRK09484 3-deoxy-D-manno-octul 97.9 1.3E-05 2.8E-10 77.3 4.2 83 285-416 55-137 (183)
89 PRK13582 thrH phosphoserine ph 97.8 4.4E-05 9.6E-10 73.4 7.7 99 277-411 67-165 (205)
90 TIGR01663 PNK-3'Pase polynucle 97.8 3.2E-05 6.8E-10 86.3 7.1 100 270-410 189-304 (526)
91 PRK10444 UMP phosphatase; Prov 97.7 7E-05 1.5E-09 75.9 7.6 43 378-420 180-222 (248)
92 PLN02645 phosphoglycolate phos 97.7 5.7E-06 1.2E-10 86.1 -0.3 102 282-419 174-277 (311)
93 PRK10530 pyridoxal phosphate ( 97.7 0.00017 3.8E-09 72.2 9.7 37 378-416 204-240 (272)
94 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.7 9.9E-06 2.1E-10 81.7 -0.1 42 379-420 185-226 (249)
95 TIGR01488 HAD-SF-IB Haloacid D 97.7 0.00011 2.3E-09 68.8 6.9 103 277-407 72-175 (177)
96 PF13242 Hydrolase_like: HAD-h 97.6 1.5E-05 3.3E-10 65.7 0.7 45 377-421 9-53 (75)
97 TIGR02251 HIF-SF_euk Dullard-l 97.5 0.00026 5.5E-09 67.2 7.6 104 272-417 36-139 (162)
98 PRK08238 hypothetical protein; 97.4 0.00038 8.3E-09 77.1 8.8 94 280-419 74-167 (479)
99 TIGR01544 HAD-SF-IE haloacid d 97.2 0.00067 1.5E-08 70.1 6.8 103 277-407 120-228 (277)
100 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.2 0.0006 1.3E-08 68.2 5.8 83 278-404 24-109 (242)
101 PF06888 Put_Phosphatase: Puta 97.0 0.0058 1.3E-07 61.9 10.8 117 277-416 70-196 (234)
102 TIGR01460 HAD-SF-IIA Haloacid 97.0 0.00016 3.5E-09 72.3 -0.3 39 379-417 195-234 (236)
103 TIGR02137 HSK-PSP phosphoserin 96.9 0.0033 7.1E-08 62.0 7.8 109 277-423 67-177 (203)
104 TIGR01684 viral_ppase viral ph 96.9 0.008 1.7E-07 62.7 10.8 68 261-342 133-201 (301)
105 TIGR01525 ATPase-IB_hvy heavy 96.7 0.0019 4.1E-08 72.6 5.3 82 279-410 385-467 (556)
106 TIGR02250 FCP1_euk FCP1-like p 96.6 0.0075 1.6E-07 57.2 8.1 87 272-401 52-139 (156)
107 COG0241 HisB Histidinol phosph 96.6 0.007 1.5E-07 59.0 7.8 109 279-420 32-152 (181)
108 KOG3040 Predicted sugar phosph 96.5 0.0066 1.4E-07 60.4 6.6 136 279-417 24-226 (262)
109 TIGR01512 ATPase-IB2_Cd heavy 96.4 0.0026 5.6E-08 71.3 4.2 83 279-411 363-446 (536)
110 COG4229 Predicted enolase-phos 96.2 0.013 2.9E-07 57.1 7.0 105 278-420 103-207 (229)
111 TIGR01456 CECR5 HAD-superfamil 96.2 0.0028 6.1E-08 66.4 2.4 31 389-419 263-293 (321)
112 PF12689 Acid_PPase: Acid Phos 96.1 0.026 5.7E-07 54.4 8.6 109 277-423 44-157 (169)
113 PHA03398 viral phosphatase sup 96.1 0.012 2.6E-07 61.5 6.5 67 261-341 135-202 (303)
114 KOG2882 p-Nitrophenyl phosphat 96.1 0.0047 1E-07 64.2 3.5 110 280-428 167-280 (306)
115 COG0560 SerB Phosphoserine pho 95.9 0.016 3.4E-07 57.6 6.4 103 277-411 76-181 (212)
116 TIGR01511 ATPase-IB1_Cu copper 95.6 0.024 5.1E-07 64.1 7.1 82 279-411 406-487 (562)
117 TIGR01545 YfhB_g-proteo haloac 95.3 0.06 1.3E-06 53.2 7.9 94 278-404 94-189 (210)
118 TIGR01533 lipo_e_P4 5'-nucleot 95.2 0.046 1E-06 56.4 6.8 53 279-337 119-172 (266)
119 PF12710 HAD: haloacid dehalog 95.0 0.047 1E-06 51.4 6.0 35 281-315 92-126 (192)
120 PLN02645 phosphoglycolate phos 94.8 0.059 1.3E-06 56.3 6.5 53 279-337 45-97 (311)
121 PF08645 PNK3P: Polynucleotide 93.9 0.047 1E-06 51.8 3.1 34 270-303 21-54 (159)
122 COG4359 Uncharacterized conser 93.5 0.49 1.1E-05 46.6 9.3 60 254-316 52-111 (220)
123 PRK10671 copA copper exporting 93.1 0.094 2E-06 62.0 4.5 82 280-411 652-733 (834)
124 PF13344 Hydrolase_6: Haloacid 91.8 0.21 4.6E-06 43.8 4.0 38 278-315 14-51 (101)
125 PF05152 DUF705: Protein of un 91.4 1.5 3.3E-05 45.8 10.3 69 269-346 133-201 (297)
126 KOG2961 Predicted hydrolase (H 91.3 0.71 1.5E-05 44.2 7.2 45 379-423 125-173 (190)
127 TIGR01522 ATPase-IIA2_Ca golgi 90.2 0.53 1.1E-05 56.2 6.6 104 280-410 530-637 (884)
128 TIGR01689 EcbF-BcbF capsule bi 89.3 0.91 2E-05 41.9 6.0 83 278-389 24-123 (126)
129 KOG3120 Predicted haloacid deh 88.7 2.4 5.2E-05 43.0 8.8 136 257-416 64-209 (256)
130 PF03031 NIF: NLI interacting 87.9 1 2.3E-05 41.7 5.6 56 273-337 31-86 (159)
131 COG4850 Uncharacterized conser 87.7 1.7 3.6E-05 46.3 7.3 59 279-337 197-260 (373)
132 PRK11033 zntA zinc/cadmium/mer 87.4 0.59 1.3E-05 54.8 4.4 36 280-315 570-605 (741)
133 TIGR01452 PGP_euk phosphoglyco 87.4 1.4 3E-05 45.1 6.6 27 279-305 19-45 (279)
134 COG4996 Predicted phosphatase 86.8 1.7 3.8E-05 40.7 6.1 60 269-337 32-91 (164)
135 PF11019 DUF2608: Protein of u 86.5 3.5 7.6E-05 42.2 8.9 125 273-417 76-209 (252)
136 TIGR01993 Pyr-5-nucltdase pyri 86.0 1 2.3E-05 42.6 4.5 38 109-147 1-39 (184)
137 PRK14988 GMP/IMP nucleotidase; 84.8 0.88 1.9E-05 45.1 3.5 44 103-147 5-48 (224)
138 TIGR01675 plant-AP plant acid 84.4 4.6 0.0001 41.0 8.4 50 264-316 109-158 (229)
139 TIGR01457 HAD-SF-IIA-hyp2 HAD- 83.7 2.8 6.1E-05 42.4 6.6 52 280-337 19-70 (249)
140 COG5610 Predicted hydrolase (H 82.1 3.4 7.5E-05 45.8 6.8 108 278-422 99-207 (635)
141 PRK03669 mannosyl-3-phosphogly 79.5 2.2 4.7E-05 43.4 4.1 37 378-416 192-231 (271)
142 PF03767 Acid_phosphat_B: HAD 79.4 0.87 1.9E-05 45.8 1.2 38 279-316 116-153 (229)
143 COG1778 Low specificity phosph 77.8 1.8 3.8E-05 41.7 2.6 78 287-412 44-121 (170)
144 KOG1615 Phosphoserine phosphat 77.6 16 0.00035 36.6 9.2 39 277-315 87-125 (227)
145 TIGR01458 HAD-SF-IIA-hyp3 HAD- 77.2 2.7 5.9E-05 42.7 4.0 37 279-315 22-58 (257)
146 TIGR01116 ATPase-IIA1_Ca sarco 77.2 5 0.00011 48.3 6.8 108 280-411 539-651 (917)
147 PRK13582 thrH phosphoserine ph 76.9 2 4.4E-05 41.1 2.9 13 108-120 1-13 (205)
148 COG0561 Cof Predicted hydrolas 75.9 2.8 6E-05 42.1 3.6 34 378-412 194-227 (264)
149 PLN02954 phosphoserine phospha 75.8 2.3 5.1E-05 41.3 3.0 16 106-121 10-25 (224)
150 PRK09449 dUMP phosphatase; Pro 75.7 2.6 5.7E-05 41.0 3.3 16 107-122 2-17 (224)
151 KOG4549 Magnesium-dependent ph 72.2 18 0.00039 33.9 7.5 107 260-401 24-134 (144)
152 TIGR01460 HAD-SF-IIA Haloacid 70.8 10 0.00022 37.9 6.3 37 279-315 15-51 (236)
153 TIGR01680 Veg_Stor_Prot vegeta 70.5 21 0.00046 37.3 8.6 37 280-316 147-183 (275)
154 PTZ00174 phosphomannomutase; P 69.2 5.5 0.00012 40.0 4.0 37 107-145 4-40 (247)
155 COG0731 Fe-S oxidoreductases [ 68.9 8.3 0.00018 40.6 5.3 27 280-306 94-121 (296)
156 smart00775 LNS2 LNS2 domain. T 67.5 8.5 0.00019 36.4 4.7 36 280-315 29-64 (157)
157 TIGR01497 kdpB K+-transporting 67.1 8.6 0.00019 44.9 5.5 35 281-315 449-483 (675)
158 TIGR00338 serB phosphoserine p 66.2 3.4 7.3E-05 40.1 1.7 19 105-123 11-29 (219)
159 TIGR01428 HAD_type_II 2-haloal 65.1 4.6 9.9E-05 38.6 2.4 17 108-124 1-17 (198)
160 PRK01158 phosphoglycolate phos 64.2 4.3 9.3E-05 39.6 2.0 35 378-413 162-196 (230)
161 TIGR01684 viral_ppase viral ph 63.1 8.4 0.00018 40.7 4.0 48 101-150 119-169 (301)
162 KOG2469 IMP-GMP specific 5'-nu 62.7 0.12 2.5E-06 56.0 -9.8 196 94-312 40-237 (424)
163 TIGR01482 SPP-subfamily Sucros 62.6 4.9 0.00011 39.0 2.1 37 378-416 154-190 (225)
164 TIGR02463 MPGP_rel mannosyl-3- 62.4 6.6 0.00014 38.2 3.0 35 378-413 184-218 (221)
165 TIGR01485 SPP_plant-cyano sucr 60.6 9.5 0.0002 38.2 3.8 47 378-426 172-218 (249)
166 TIGR01549 HAD-SF-IA-v1 haloaci 60.5 6.3 0.00014 35.9 2.3 15 110-124 1-15 (154)
167 TIGR01491 HAD-SF-IB-PSPlk HAD- 59.5 7.6 0.00017 36.7 2.8 17 108-124 4-20 (201)
168 PHA03398 viral phosphatase sup 59.1 9.6 0.00021 40.3 3.6 46 102-149 122-170 (303)
169 TIGR01454 AHBA_synth_RP 3-amin 57.7 7.4 0.00016 37.4 2.4 14 111-124 1-14 (205)
170 TIGR02247 HAD-1A3-hyp Epoxide 57.5 5.7 0.00012 38.3 1.5 16 108-123 2-17 (211)
171 PRK00192 mannosyl-3-phosphogly 56.2 8.7 0.00019 39.0 2.7 36 378-414 195-231 (273)
172 PF08645 PNK3P: Polynucleotide 56.0 6.3 0.00014 37.4 1.5 16 109-124 1-16 (159)
173 KOG2882 p-Nitrophenyl phosphat 55.3 14 0.0003 39.1 3.9 35 279-313 39-73 (306)
174 KOG2630 Enolase-phosphatase E- 55.1 20 0.00043 36.7 4.9 111 260-418 115-225 (254)
175 TIGR02463 MPGP_rel mannosyl-3- 54.2 19 0.00042 34.9 4.7 35 281-315 19-53 (221)
176 TIGR01493 HAD-SF-IA-v2 Haloaci 54.1 8.6 0.00019 35.8 2.1 15 110-124 1-15 (175)
177 TIGR01689 EcbF-BcbF capsule bi 53.7 7.5 0.00016 35.8 1.6 15 109-123 2-16 (126)
178 PLN02423 phosphomannomutase 53.1 12 0.00026 37.8 3.1 29 388-416 199-230 (245)
179 TIGR01487 SPP-like sucrose-pho 52.5 8.1 0.00017 37.6 1.7 36 378-414 152-187 (215)
180 TIGR01670 YrbI-phosphatas 3-de 52.4 6.2 0.00014 36.9 0.9 14 108-121 1-14 (154)
181 PF00702 Hydrolase: haloacid d 52.4 12 0.00026 35.4 2.8 19 108-126 1-19 (215)
182 PF12689 Acid_PPase: Acid Phos 50.6 8.2 0.00018 37.4 1.3 15 108-122 3-17 (169)
183 PF06941 NT5C: 5' nucleotidase 50.5 8.8 0.00019 36.9 1.6 22 109-130 2-24 (191)
184 TIGR01484 HAD-SF-IIB HAD-super 49.8 26 0.00057 33.5 4.7 36 279-314 18-53 (204)
185 PF13419 HAD_2: Haloacid dehal 49.2 12 0.00025 33.8 2.1 14 111-124 1-14 (176)
186 TIGR00685 T6PP trehalose-phosp 47.7 15 0.00032 36.8 2.8 39 378-417 172-217 (244)
187 PF09949 DUF2183: Uncharacteri 47.2 41 0.00088 29.8 5.1 27 297-323 2-28 (100)
188 PRK10513 sugar phosphate phosp 46.6 48 0.001 33.1 6.3 36 280-315 22-57 (270)
189 TIGR01484 HAD-SF-IIB HAD-super 46.4 11 0.00023 36.2 1.5 34 378-412 168-201 (204)
190 TIGR00099 Cof-subfamily Cof su 45.7 12 0.00026 37.3 1.8 34 378-412 193-226 (256)
191 PRK00192 mannosyl-3-phosphogly 45.5 30 0.00066 35.1 4.7 35 281-315 24-58 (273)
192 TIGR01509 HAD-SF-IA-v3 haloaci 45.2 7.7 0.00017 35.9 0.3 16 110-125 1-16 (183)
193 COG0561 Cof Predicted hydrolas 45.0 31 0.00067 34.5 4.6 36 280-315 22-57 (264)
194 TIGR02471 sucr_syn_bact_C sucr 44.6 22 0.00047 35.1 3.4 47 378-427 164-210 (236)
195 COG3700 AphA Acid phosphatase 44.5 98 0.0021 30.8 7.6 52 265-316 101-152 (237)
196 PRK14010 potassium-transportin 44.3 46 0.001 39.0 6.4 36 280-315 443-478 (673)
197 COG2217 ZntA Cation transport 42.9 40 0.00087 39.8 5.6 35 281-315 540-574 (713)
198 TIGR01672 AphA HAD superfamily 42.3 13 0.00028 37.8 1.4 15 110-124 65-79 (237)
199 smart00775 LNS2 LNS2 domain. T 40.7 25 0.00054 33.2 2.9 14 110-123 1-14 (157)
200 TIGR00099 Cof-subfamily Cof su 40.5 43 0.00094 33.3 4.8 35 280-314 18-52 (256)
201 PRK10444 UMP phosphatase; Prov 40.0 27 0.00058 35.5 3.2 35 108-145 1-35 (248)
202 KOG0207 Cation transport ATPas 39.5 74 0.0016 38.4 7.0 73 281-403 726-798 (951)
203 TIGR01662 HAD-SF-IIIA HAD-supe 39.5 16 0.00035 32.5 1.4 13 109-121 1-13 (132)
204 TIGR01664 DNA-3'-Pase DNA 3'-p 39.3 30 0.00064 32.9 3.3 16 107-122 12-27 (166)
205 PF08282 Hydrolase_3: haloacid 39.3 50 0.0011 31.6 4.9 36 279-314 16-51 (254)
206 TIGR01524 ATPase-IIIB_Mg magne 38.7 35 0.00076 41.0 4.4 100 281-409 518-621 (867)
207 TIGR01482 SPP-subfamily Sucros 38.2 50 0.0011 31.9 4.7 36 280-315 17-52 (225)
208 PRK01122 potassium-transportin 37.8 49 0.0011 38.8 5.3 35 281-315 448-482 (679)
209 TIGR01487 SPP-like sucrose-pho 37.1 52 0.0011 31.9 4.7 36 279-314 19-54 (215)
210 PRK10187 trehalose-6-phosphate 36.4 33 0.00072 35.1 3.3 39 378-417 179-220 (266)
211 PRK01158 phosphoglycolate phos 36.0 57 0.0012 31.7 4.8 36 280-315 22-57 (230)
212 COG0036 Rpe Pentose-5-phosphat 34.9 60 0.0013 33.0 4.7 49 279-342 94-144 (220)
213 TIGR01486 HAD-SF-IIB-MPGP mann 34.9 29 0.00063 34.8 2.5 36 378-414 181-218 (256)
214 PRK03669 mannosyl-3-phosphogly 34.2 60 0.0013 32.9 4.8 36 280-315 26-61 (271)
215 TIGR01681 HAD-SF-IIIC HAD-supe 34.1 22 0.00049 32.1 1.5 14 109-122 1-14 (128)
216 PRK09484 3-deoxy-D-manno-octul 34.1 20 0.00044 34.4 1.2 17 106-122 19-35 (183)
217 PRK10976 putative hydrolase; P 33.2 24 0.00051 35.4 1.6 37 378-416 195-231 (266)
218 TIGR01517 ATPase-IIB_Ca plasma 32.7 44 0.00095 40.6 4.0 101 281-408 582-686 (941)
219 PRK12702 mannosyl-3-phosphogly 32.7 46 0.001 35.3 3.6 37 108-147 1-38 (302)
220 PRK10513 sugar phosphate phosp 31.9 30 0.00065 34.6 2.1 37 378-416 201-237 (270)
221 TIGR00213 GmhB_yaeD D,D-heptos 31.1 48 0.001 31.4 3.2 38 109-147 2-46 (176)
222 PF13344 Hydrolase_6: Haloacid 31.0 43 0.00093 29.2 2.7 33 111-146 1-33 (101)
223 PRK09552 mtnX 2-hydroxy-3-keto 30.7 26 0.00057 34.3 1.4 15 110-124 5-19 (219)
224 TIGR01486 HAD-SF-IIB-MPGP mann 30.6 1E+02 0.0022 30.8 5.7 34 282-315 20-53 (256)
225 COG0647 NagD Predicted sugar p 30.3 32 0.0007 35.8 2.0 20 105-124 5-24 (269)
226 TIGR02137 HSK-PSP phosphoserin 29.3 28 0.0006 34.3 1.3 25 283-307 133-157 (203)
227 cd05014 SIS_Kpsf KpsF-like pro 28.9 50 0.0011 29.1 2.8 30 280-309 60-89 (128)
228 PRK10976 putative hydrolase; P 28.9 82 0.0018 31.5 4.7 35 280-314 21-55 (266)
229 TIGR01488 HAD-SF-IB Haloacid D 28.8 35 0.00077 31.5 1.9 14 111-124 2-15 (177)
230 PRK10530 pyridoxal phosphate ( 28.8 84 0.0018 31.3 4.7 35 280-314 22-56 (272)
231 TIGR02461 osmo_MPG_phos mannos 28.3 89 0.0019 31.1 4.8 34 281-314 18-51 (225)
232 COG0560 SerB Phosphoserine pho 28.3 32 0.00069 34.2 1.5 16 106-121 3-18 (212)
233 PF09419 PGP_phosphatase: Mito 28.0 61 0.0013 31.4 3.4 38 102-140 35-73 (168)
234 PRK15126 thiamin pyrimidine py 28.0 88 0.0019 31.5 4.7 37 279-315 20-56 (272)
235 PF08282 Hydrolase_3: haloacid 27.7 46 0.00099 31.9 2.5 45 378-425 191-235 (254)
236 TIGR01489 DKMTPPase-SF 2,3-dik 27.5 35 0.00075 31.7 1.6 15 110-124 3-17 (188)
237 PF13304 AAA_21: AAA domain; P 27.2 32 0.00069 32.1 1.3 38 268-305 261-300 (303)
238 TIGR01490 HAD-SF-IB-hyp1 HAD-s 26.8 38 0.00083 32.2 1.8 14 111-124 2-15 (202)
239 PRK09456 ?-D-glucose-1-phospha 26.7 50 0.0011 31.7 2.5 15 110-124 2-16 (199)
240 TIGR00685 T6PP trehalose-phosp 26.7 33 0.00073 34.3 1.4 15 109-123 4-18 (244)
241 PRK10517 magnesium-transportin 26.5 93 0.002 37.7 5.3 99 281-408 553-655 (902)
242 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.3 68 0.0015 28.1 3.2 29 281-309 60-88 (126)
243 PRK12702 mannosyl-3-phosphogly 26.1 1.5E+02 0.0032 31.6 6.0 35 281-315 21-55 (302)
244 PRK15122 magnesium-transportin 25.7 1E+02 0.0023 37.3 5.5 99 281-408 553-655 (903)
245 TIGR01523 ATPase-IID_K-Na pota 25.6 69 0.0015 39.5 4.0 36 280-315 648-683 (1053)
246 TIGR01545 YfhB_g-proteo haloac 25.3 37 0.00079 33.5 1.3 17 108-124 5-21 (210)
247 PF12710 HAD: haloacid dehalog 24.8 39 0.00084 31.5 1.4 18 386-404 172-189 (192)
248 TIGR01647 ATPase-IIIA_H plasma 24.5 55 0.0012 38.7 2.8 36 280-315 444-479 (755)
249 PF05240 APOBEC_C: APOBEC-like 24.1 54 0.0012 26.2 1.8 29 280-308 1-29 (55)
250 TIGR02245 HAD_IIID1 HAD-superf 23.6 98 0.0021 30.7 3.9 41 274-315 41-81 (195)
251 PF03031 NIF: NLI interacting 22.9 45 0.00097 30.8 1.4 13 110-122 2-14 (159)
252 PRK14502 bifunctional mannosyl 22.8 93 0.002 36.7 4.1 43 101-145 409-451 (694)
253 PF00571 CBS: CBS domain CBS d 22.0 1.4E+02 0.0031 22.1 3.8 39 269-307 4-42 (57)
254 COG4087 Soluble P-type ATPase 21.9 6.2E+02 0.013 24.2 8.5 90 282-420 34-123 (152)
255 PF00834 Ribul_P_3_epim: Ribul 21.9 3.2E+02 0.0068 27.1 7.2 49 281-342 92-140 (201)
256 TIGR01485 SPP_plant-cyano sucr 21.6 1.7E+02 0.0037 29.1 5.4 35 280-314 23-57 (249)
257 PF08235 LNS2: LNS2 (Lipin/Ned 21.5 1.7E+02 0.0037 28.1 5.0 39 280-318 29-67 (157)
258 TIGR01052 top6b DNA topoisomer 21.1 6.7E+02 0.014 28.5 10.2 132 281-429 289-444 (488)
259 PF13086 AAA_11: AAA domain; P 21.1 2.6E+02 0.0056 26.4 6.3 16 384-399 212-227 (236)
260 KOG1618 Predicted phosphatase 21.0 83 0.0018 33.9 3.0 32 389-420 297-343 (389)
261 KOG2134 Polynucleotide kinase 21.0 48 0.001 36.4 1.3 19 106-124 73-91 (422)
262 PRK15126 thiamin pyrimidine py 20.7 50 0.0011 33.3 1.3 37 378-416 193-229 (272)
263 COG1121 ZnuC ABC-type Mn/Zn tr 20.2 2.2E+02 0.0047 29.6 5.8 75 249-342 117-218 (254)
264 TIGR02826 RNR_activ_nrdG3 anae 20.1 1.1E+02 0.0024 28.8 3.4 25 281-305 75-99 (147)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=2.1e-136 Score=1098.45 Aligned_cols=443 Identities=43% Similarity=0.774 Sum_probs=367.9
Q ss_pred eEEccccccCCccEEEEeccccccccCc-chHHHHHHHHHHHHHHhcCCCccccCCCCCCCCccccceeecCCCeEEEec
Q 008819 97 IYVNKNLRLDNIQVYGFDYDYTLAHYSS-NLQSLIYDLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLD 175 (552)
Q Consensus 97 VFvNr~l~L~~i~~iGFDmDyTLa~Y~~-~~~~L~y~~~~~~LV~~~gYP~~ll~~~~Dp~F~iRGL~~D~~~GnlLKlD 175 (552)
|||||+|+|++|+|||||||||||+|++ ++++|+|+.++++||+++|||++|++++|||+|+||||+||+++|||||||
T Consensus 1 VF~Nr~l~l~~i~~iGFDmDyTLa~Y~~~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGL~~D~~~GnlLKld 80 (448)
T PF05761_consen 1 VFVNRSLNLKDIDVIGFDMDYTLARYKSPELEELIYELARERLVEEKGYPEELLNLEYDPDFAIRGLVIDKERGNLLKLD 80 (448)
T ss_dssp -EESS-EECCC--EEEE-TBTTTBEE-CCHHHHHHHHHHHHHHHHHTT--GGGGG----CCC--TTEEEETTTTEEEEEB
T ss_pred CeeCCccccccCCEEEECcccchhhcCHHHHHHHHHHHHHHHHHhccCCCHHHhCCCCchhhhhcceeeEcccCeEEEEc
Confidence 8999999999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecccccCCccCCHHHHHHHhCCccccCCccCCccccccccchhHHHHHHHHHHHhh--hccCCCChhhHHHHHH
Q 008819 176 FFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV--DAKLEFDASYIYEDVN 253 (552)
Q Consensus 176 ~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~l~dlFslpe~~L~a~lvd~~~--~~~~~~~~~~l~~DV~ 253 (552)
++|+|++ ||||+++|+.+||+++||+++|+.+..++|+.++|+|++||+||||++||+++ +.++.+++..+|+||+
T Consensus 81 ~~g~I~~--a~hG~~~l~~eei~~~Y~~~~i~~~~~~~~~~l~tlFslpe~~L~a~lvd~~d~~~~~~~~~~~~l~~DV~ 158 (448)
T PF05761_consen 81 RFGYILR--AYHGFRPLSDEEIRELYGNKFIPLSDDSRFFQLNTLFSLPEAYLFAQLVDYFDVEDGNIEYDYRSLYQDVR 158 (448)
T ss_dssp TTSBEEE--EEETTEEE-HHHHCCCCTTSB--TTSTTTEEEE-SCCHHHHHHHHHHHHHHHHECCTTCCEEHHHHHHHHH
T ss_pred CCCcEEE--EEeccccCCHHHHHHhcCCcccccchhhHHHHHhhHhhhhHHHHHHHHHHHhhcccCCCCCCHHHHHHHHH
Confidence 9999995 79999999999999999999999877778999999999999999999999999 7778899999999999
Q ss_pred HHHHHhhhchhhHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEE
Q 008819 254 RAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVV 333 (552)
Q Consensus 254 ~Av~~vH~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~V 333 (552)
+||++||.+|.+|++|++||+|||+|+|.++.||++||++|||+||+|||+|+||+.+|+|+++.+++.+.+|++|||+|
T Consensus 159 ~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvV 238 (448)
T PF05761_consen 159 DAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVV 238 (448)
T ss_dssp HHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEE
T ss_pred HHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred EEcCCCCCCCCCCCcceeeecCcCcccccc-ccccCCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccccccc-CCc
Q 008819 334 IAQANKPDFYTSDHPFRCYDTEKDTLAFTK-VDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSK-AGW 411 (552)
Q Consensus 334 Iv~A~KP~FF~~~~pFr~vd~~~gk~~~~~-v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~-~Gw 411 (552)
||+|+||+||++++|||+||+++|++.|++ ++++++|+||+|||+.++++++||+|++||||||||||||+.+|+ +||
T Consensus 239 Iv~A~KP~FF~~~~pfr~vd~~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gW 318 (448)
T PF05761_consen 239 IVDARKPGFFTEGRPFREVDTETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGW 318 (448)
T ss_dssp EES--CCHHHCT---EEEEETTTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-S
T ss_pred EEcCCCCcccCCCCceEEEECCCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccce
Confidence 999999999999999999999999999988 899999999999999999999999999999999999999998865 799
Q ss_pred EEEEEeccchhHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHHHHHhhhhccCcccc
Q 008819 412 RTAAIIHELESEIRIQNDETYRFEQAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGAT 491 (552)
Q Consensus 412 rT~~VipELe~Ei~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~r~~~~~~fn~~~Gsl 491 (552)
||+|||||||+||++|++++++.++ |+.|+.++++++....+..+.++.++.+++|++||+++++.|+++|||+|||+
T Consensus 319 rT~~Ii~ELe~Ei~~~~~~~~~~~~--l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~Gsl 396 (448)
T PF05761_consen 319 RTAAIIPELEQEIEIWNSKKYRFEE--LQELEELLEELQDHLDQLRSSSELRPDISELRKERRELRREMKELFNPQFGSL 396 (448)
T ss_dssp EEEEE-TTHHHHHHHHHHTHHHHHH--HHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-TTT-BS
T ss_pred EEEEEehhhhhhhhhhhhcchhhhH--HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence 9999999999999999998887765 88888888888765443345677888999999999999999999999999999
Q ss_pred ccCCCCCcchhhhhhccccccccccccccccCCCCccccCCCCcCCCCCCCCccC
Q 008819 492 FLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHHVKVPS 546 (552)
Q Consensus 492 Frt~~~~~S~Fa~qv~RyAdlYtS~v~NLl~Y~~~~~fr~p~~~~~mpHe~~v~~ 546 (552)
|||++ ++|+||+||+||||||||+|+||++|||+++||||++ +||||++|++
T Consensus 397 fRtg~-~~s~Fa~qv~RyAdlYtS~v~Nll~y~~~~~Fr~~~~--~lpHE~~~~~ 448 (448)
T PF05761_consen 397 FRTGH-NPSYFARQVERYADLYTSSVSNLLNYSPNYYFRPPRD--LLPHESTVWH 448 (448)
T ss_dssp SEETT-EEBHHHHHHHHH-SEEESSHHHHHHS-TT-EE---------CCG-----
T ss_pred HhcCC-CccHHHHHHHHHhhhhhccccHHHhCCcceEEeCCCC--CCCCCCCCCC
Confidence 99976 6999999999999999999999999999999999974 9999998763
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.8e-134 Score=1019.77 Aligned_cols=476 Identities=55% Similarity=0.932 Sum_probs=459.8
Q ss_pred hhhccccccc----hHHHHHHHHHHHHHHHhhhcCchhhhcCCCCCCCeeEEccccccCCccEEEEeccccccccCcchH
Q 008819 52 KQDGADNLVM----DDEIAKIRQEFNAAKQSFLKIPEALKEMPKMNPEGIYVNKNLRLDNIQVYGFDYDYTLAHYSSNLQ 127 (552)
Q Consensus 52 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VFvNr~l~L~~i~~iGFDmDyTLa~Y~~~~~ 127 (552)
|++.|+.|++ ++++.+.+.+++.+++.+..||+++++ .+||++||||++++|++|++||||||||||+|+..++
T Consensus 7 ~a~~a~~l~e~~~~~~e~t~~~he~~~~~~r~l~ip~~i~s--llnp~aiy~nne~sl~dievygfdydytla~ys~hlh 84 (510)
T KOG2470|consen 7 EAKYAVALPECSTVEDEITKIRHEFELAKQRFLNIPEAINS--LLNPQAIYVNNELSLDDIEVYGFDYDYTLAHYSSHLH 84 (510)
T ss_pred ccccccccccCCcchHHHHHHhhhhhhccccccCCCHHHHh--ccChhheeecCcccccceeEeccccchhHHHHHHHHH
Confidence 6788888887 688999999999999999999999999 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCCCCCCCccccceeecCCCeEEEecCCCceeecccccCCccCCHHHHHHHhCCcccc
Q 008819 128 SLIYDLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIG 207 (552)
Q Consensus 128 ~L~y~~~~~~LV~~~gYP~~ll~~~~Dp~F~iRGL~~D~~~GnlLKlD~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~ 207 (552)
.+||+.+++.||+++.||+.|++++|||+|+||||+||+++|.|+|+|+||+|+.++||+|.++++++||.++||++||+
T Consensus 85 ~lif~~ard~lvn~frYPe~i~q~eYdPnFaIRGLhYDv~kglLmKlDaF~~iqlgt~YrGr~kv~~eEvi~mY~~rhip 164 (510)
T KOG2470|consen 85 SLIFDLARDHLVNEFRYPEVIRQYEYDPNFAIRGLHYDVQKGLLMKLDAFHYIQLGTVYRGRRKVPDEEVIEMYGGRHIP 164 (510)
T ss_pred HHHHHHHHHHHHHhccChHHhhhcccCCCcccchhhhHhhhhhheeeccceeeccCceeecCccCCHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCC-------ccccccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHhhhchhhHHHHHhCcccccccc
Q 008819 208 RDQARG-------LVGLMDFFCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKN 280 (552)
Q Consensus 208 ~~~~~~-------~~~l~dlFslpe~~L~a~lvd~~~~~~~~~~~~~l~~DV~~Av~~vH~~G~lk~~v~~np~kYi~k~ 280 (552)
.++.+. +.+++|+||+||+||++|+|+||.++++++++.++|+||.+||.+||..|.+ +|.+|.+|||++.
T Consensus 165 l~q~~g~~~k~~~mvqlmDiFs~pEmcLls~vveYF~~~~lefd~~~ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi~r~ 242 (510)
T KOG2470|consen 165 LDQMSGFYGKGSKMVQLMDIFSLPEMCLLSCVVEYFLDNKLEFDPSHLYKDVNDAIRDVHRKGHM--KIESDLEKYIERN 242 (510)
T ss_pred HHHhcCccCCCchHHHHHHHhccHHHHHHHHHHHHHHhccccCCHHHHHHhHHHHHHHhhhhhhH--HHhhchHHHhhcc
Confidence 877655 6789999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCC-CcceeeecCcCcc
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSD-HPFRCYDTEKDTL 359 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~-~pFr~vd~~~gk~ 359 (552)
|++..+|++|+++|||+||+||||++||+.+|+|+. |.+||++|||||++|+||.||++. +|||.+|.++|.+
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flv------G~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl 316 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLV------GDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSL 316 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeee------CccHHhhhheeEEecCCCcccccccCcchhhcccccch
Confidence 999999999999999999999999999999999998 999999999999999999999986 5999999999999
Q ss_pred ccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccc-cCCcEEEEEeccchhHHHHhhchhhHHHHHH
Q 008819 360 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPS-KAGWRTAAIIHELESEIRIQNDETYRFEQAK 438 (552)
Q Consensus 360 ~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak-~~GwrT~~VipELe~Ei~~~~~~~~~~~~~~ 438 (552)
.|++|..|++|+||.+||+.++++++||+|++|||||||+|+|+++.. ++||||+|||||||+||+|+|+++|+++++|
T Consensus 317 ~wdkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~N~e~y~~s~~w 396 (510)
T KOG2470|consen 317 LWDKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQNTEQYRFSQTW 396 (510)
T ss_pred hhhhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999885 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccCCCCCcchhhhhhcccccccccccc
Q 008819 439 FHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAE 518 (552)
Q Consensus 439 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~r~~~~~~fn~~~GslFrt~~~~~S~Fa~qv~RyAdlYtS~v~ 518 (552)
++.|+.|++++|. ++++++++++++|++||+++|..+|++||.+|||+|||++| ||+|++++.||||||||+++
T Consensus 397 ~q~lt~Ller~q~-----~rseasq~~L~ew~~eRq~lR~~tK~~FN~qFGs~FrT~~n-ptyFsrrl~rfaDiYts~ls 470 (510)
T KOG2470|consen 397 LQILTGLLERMQA-----QRSEASQSVLDEWMKERQELRDTTKQMFNAQFGSTFRTDHN-PTYFSRRLHRFADIYTSSLS 470 (510)
T ss_pred HHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCC-ccHHHHHHHHHHHHHhccHH
Confidence 9999999999974 56789999999999999999999999999999999999997 99999999999999999999
Q ss_pred ccccCCCCccccCCCCcCCCCCCCCcc
Q 008819 519 NFLLYPPEAWLHVPFDIKIMPHHVKVP 545 (552)
Q Consensus 519 NLl~Y~~~~~fr~p~~~~~mpHe~~v~ 545 (552)
|||+|++.|+|++.+ +.||||..+.
T Consensus 471 nlL~y~~~htfYprr--~~mpHe~~~~ 495 (510)
T KOG2470|consen 471 NLLNYRVEHTFYPRR--TPMPHEVPVW 495 (510)
T ss_pred HHHhcCcccccCCcC--CCCccccccc
Confidence 999999999999874 7999998764
No 3
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=9.2e-101 Score=798.40 Aligned_cols=331 Identities=49% Similarity=0.887 Sum_probs=317.9
Q ss_pred eEEccccccCCccEEEEeccccccccC-cchHHHHHHHHHHHHHHhcCCCccccCCCCCCCCccccceeecCCCeEEEec
Q 008819 97 IYVNKNLRLDNIQVYGFDYDYTLAHYS-SNLQSLIYDLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLD 175 (552)
Q Consensus 97 VFvNr~l~L~~i~~iGFDmDyTLa~Y~-~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~Dp~F~iRGL~~D~~~GnlLKlD 175 (552)
|||||+|+|++|++||||||||||+|+ ++++.|+|++++++||+.+|||++|++++|||+|+||||++|+++|||||+|
T Consensus 1 if~nr~l~l~~i~~~GFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYp~~l~~~~~d~~f~iRGL~~D~~~GnllKld 80 (343)
T TIGR02244 1 VFVNRELNLEKIQVFGFDMDYTLAQYKSPELEALIYDLAKERLVKRFGYPEELLSFAYDPTFAIRGLVFDKLKGNLLKLD 80 (343)
T ss_pred CeeCCccccccCCEEEECccccccccChHHHHHHHHHHHHHHHHHhcCCChHHhCCcCCCcccccceeeEcccCeEEEEc
Confidence 799999999999999999999999999 4999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecccccCCccCCHHHHHHHhCCccccCCccCCccccccccchhHHHHHHHHHHHhhhc---cCCCChhhHHHHH
Q 008819 176 FFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDA---KLEFDASYIYEDV 252 (552)
Q Consensus 176 ~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~l~dlFslpe~~L~a~lvd~~~~~---~~~~~~~~l~~DV 252 (552)
++|+|++ |+||+++||.+||.++||+++++.++..+|+.++|+||+||+|||||+||+++++ +..+++.++|+||
T Consensus 81 ~~g~I~~--~~hG~~~l~~~e~~~~Y~~~~~~~~~~~~~~~l~tlF~lpe~~L~a~lvd~~~~~~~~~~~~~~~~~~~dv 158 (343)
T TIGR02244 81 RFGNILR--GYHGLRPLSDKEVQEIYGNKYISRSNGDRYYLLDTLFSLPEACLIAQLVDYFDDHPKGPLAFDYRQIYQDV 158 (343)
T ss_pred CCCcEEE--EecCCccCCHHHHHHHcCccccCCCCCccEEEecccccchHHHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 9999997 5799999999999999999999887777899999999999999999999999877 6778999999999
Q ss_pred HHHHHHhhhchhhHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccE
Q 008819 253 NRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDV 332 (552)
Q Consensus 253 ~~Av~~vH~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~ 332 (552)
++||++||.+|.+|++|++||++||+++|++.++|++|+++|+|+||+|||++++++.+|+++++.++ .+.+|++|||+
T Consensus 159 ~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~-~~~~w~~yFD~ 237 (343)
T TIGR02244 159 RDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFL-GEHDWRDYFDV 237 (343)
T ss_pred HHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcc-cccchHhhCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999875555 56899999999
Q ss_pred EEEcCCCCCCCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccc-cCCc
Q 008819 333 VIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPS-KAGW 411 (552)
Q Consensus 333 VIv~A~KP~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak-~~Gw 411 (552)
||++|+||+||++++|||+||+++|.+.|+.+..+++|+||+|||+.++++.+|+++++||||||||++||.+|+ .+||
T Consensus 238 IIt~a~KP~FF~~~~pf~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw 317 (343)
T TIGR02244 238 VIVDARKPGFFTEGRPFRQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGW 317 (343)
T ss_pred EEeCCCCCcccCCCCceEEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCc
Confidence 999999999999999999999999999999988899999999999999999999999999999999999999987 7999
Q ss_pred EEEEEeccchhHHHHhhch
Q 008819 412 RTAAIIHELESEIRIQNDE 430 (552)
Q Consensus 412 rT~~VipELe~Ei~~~~~~ 430 (552)
+|++|+|||+.|+++|.+.
T Consensus 318 ~TvlI~pEL~~E~~~~~~~ 336 (343)
T TIGR02244 318 RTAAIIPELEQEVGILTNS 336 (343)
T ss_pred EEEEEchhHHHHHHHHhhc
Confidence 9999999999999999543
No 4
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-89 Score=707.41 Aligned_cols=408 Identities=33% Similarity=0.540 Sum_probs=360.4
Q ss_pred CCCCCeeEEccccccCCccEEEEeccccccccC-cchHHHHHHHHHHHHHHhcCCCccccCCCCCCCCccccceeecCCC
Q 008819 91 KMNPEGIYVNKNLRLDNIQVYGFDYDYTLAHYS-SNLQSLIYDLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKG 169 (552)
Q Consensus 91 ~~~~~~VFvNr~l~L~~i~~iGFDmDyTLa~Y~-~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~Dp~F~iRGL~~D~~~G 169 (552)
...|.+|||||+|+|++|.+|||||||||++|+ ++++.|+|++ +.+++...|||.+++.+.|||+|++|||++|.++|
T Consensus 10 r~~~~~if~~rsl~l~~i~~~GfdmDyTL~~Y~~~~~esLay~~-~~~~l~~~Gyp~~ll~~~~d~~f~~rGL~ld~~~G 88 (424)
T KOG2469|consen 10 RDVPHRIFCNRSLNLENIGIVGFDMDYTLARYNLPEMESLAYDL-AQFLLKDKGYPNELLSTSFDWNFPCRGLVLDKERG 88 (424)
T ss_pred cccchheehhhhhhhhcCcEEeeccccchhhhcccchHHHHHHH-HHHHHHhcCChhhhhccccCccceeeeeEEeccCC
Confidence 455788999999999999999999999999998 7999999994 55555569999999999999999999999999999
Q ss_pred eEEEecCCCceeecccccCCccCCHHHHHHHhCCccccCCccCCccccccccchhHHHHHHHHHHHhhhccC----CCCh
Q 008819 170 CLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKL----EFDA 245 (552)
Q Consensus 170 nlLKlD~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~l~dlFslpe~~L~a~lvd~~~~~~~----~~~~ 245 (552)
|+||+|++|+|++ |+||++++|.+|+.++||++.+...+ .+++.++|+|++||+.++||+||+++++.. ..++
T Consensus 89 N~lKld~~~~vl~--a~hg~rfls~~~~~eiyg~~~~~~~~-~~~~~l~t~F~~~ea~~~aq~vd~~d~~~~~~~~~~dy 165 (424)
T KOG2469|consen 89 NLLKLDRFGYVLR--AAHGTRFLSNEEISEIYGRKLVRLSD-SRYYLLNTLFSMPEADLFAQAVDFLDNGPEYGPVDMDY 165 (424)
T ss_pred ceeeeeccCceee--eccccccccccchhhhcccccccccC-chhhhhhhhhhchhHHHHHhhcchhhcCCccCccchhh
Confidence 9999999999997 57999999999999999999988877 788889999999999999999998876643 3467
Q ss_pred hhHHHHHHHHHHHhhhchhhHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCC
Q 008819 246 SYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDS 325 (552)
Q Consensus 246 ~~l~~DV~~Av~~vH~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~ 325 (552)
...|+||++|++++|.+|.+|+.|+++|++||.+++.++.+|.++|++|||+||+|||.|+|++.+|++++ |.+
T Consensus 166 k~~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~------~~d 239 (424)
T KOG2469|consen 166 KPGWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHY------GFD 239 (424)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhhccceEEeeccccchhhHHHHHHh------CCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred ccCCccEEEEcCCCCCCCCCCCcceeeecCcCccccc-cccccCCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccc
Q 008819 326 WRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFT-KVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLR 404 (552)
Q Consensus 326 W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~~~-~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~ 404 (552)
|+.|||+||+.|+||+||.+++++|+|++++|+++.+ ..++++++.+|+||+++.++..++++|.++||+||||++||.
T Consensus 240 W~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl 319 (424)
T KOG2469|consen 240 WETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVL 319 (424)
T ss_pred cceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchhcccCCcchHHHHHHHhcccccceeecccceeeeEE
Confidence 9999999999999999999999999999999999874 466899999999999999999999999999999999999998
Q ss_pred cc-ccCCcEEEEEeccchhHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 008819 405 GP-SKAGWRTAAIIHELESEIRIQNDETYRFEQAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMKKM 483 (552)
Q Consensus 405 ~a-k~~GwrT~~VipELe~Ei~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~r~~~~~~ 483 (552)
.+ |+.||||++|+|||+.|..+|.+.+..+++ +......+++++.+...+..+ ...+...+.++++++..|++
T Consensus 320 ~skk~~~wrt~lv~peL~~e~~v~~~~ke~~~e--l~~~~~~laDiy~~l~~s~~s---~~~~~~~~r~~~~~~~~~dk- 393 (424)
T KOG2469|consen 320 VSKKRRGWRTVLVAPELEREDLVLLDSKEEFIE--LLNWSSKLADIYPNLDLSLLS---APKDLSIKRDIQKLTECMDK- 393 (424)
T ss_pred ecceecceEEEEEehhhhhhhhhhccchHHHHH--HhccchhhHhhccCCchhhhh---cccccchhHHHHHHHHhHHH-
Confidence 66 568999999999999999999987633332 444455566665543222111 12234455666677777754
Q ss_pred hccCccccccCCCCCcchhhhhhccccccccc
Q 008819 484 FNKSFGATFLTDTGQESAFAYHIHRYADVYTS 515 (552)
Q Consensus 484 fn~~~GslFrt~~~~~S~Fa~qv~RyAdlYtS 515 (552)
++..|||+|+|+ +|.|.||.|++||||+|||
T Consensus 394 ~~~~~~sl~~s~-~~~t~~a~q~~r~A~~y~s 424 (424)
T KOG2469|consen 394 FYGVWGSLFRTG-YQRTRFALQVERYADLYTS 424 (424)
T ss_pred HhcchHHhhccc-cccchHHHHHHHHHHHhcC
Confidence 557899999997 5899999999999999997
No 5
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.67 E-value=5.3e-16 Score=150.62 Aligned_cols=107 Identities=25% Similarity=0.288 Sum_probs=90.6
Q ss_pred cccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeec
Q 008819 275 RYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 275 kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
.++...|++.++|+.|+++|++++|+||++...+...++. .+|.+|||.|++.. +.
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~---------~~l~~~f~~i~~~~---------------~~ 146 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLER---------LGVRDFFDAVITSE---------------EE 146 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHh---------CChHHhccEEEEec---------------cC
Confidence 3567889999999999999999999999999999888875 47899999999876 33
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
..+|| .+++|.. +++.+|+.+++|+||||+...||.+|+++||+|++|...
T Consensus 147 ~~~KP---------~~~~~~~-----~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~ 197 (221)
T TIGR02253 147 GVEKP---------HPKIFYA-----ALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQG 197 (221)
T ss_pred CCCCC---------CHHHHHH-----HHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCC
Confidence 33344 4445544 999999999999999999988999999999999999653
No 6
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.62 E-value=4.1e-15 Score=148.48 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=87.8
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCc-cEEEEcCCCCCCCCCCCcceeeec
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF-DVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyF-D~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
.+.+.|++.++|+.|+++|++++|+||++...++.+++.+ ++.++| |.|++.. ++
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~---------gl~~~f~d~ii~~~---------------~~ 152 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA---------ALQGYRPDYNVTTD---------------DV 152 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH---------HhcCCCCceEEccc---------------cC
Confidence 3567899999999999999999999999999999999864 577785 9888876 33
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~-g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
..+|| .+++|.. +++.+|+. +++|+||||+. .||.+|+++|++|++|...
T Consensus 153 ~~~KP---------~p~~~~~-----a~~~l~~~~~~~~l~IGDs~-~Di~aA~~aGi~~i~v~~g 203 (253)
T TIGR01422 153 PAGRP---------APWMALK-----NAIELGVYDVAACVKVGDTV-PDIEEGRNAGMWTVGLILS 203 (253)
T ss_pred CCCCC---------CHHHHHH-----HHHHcCCCCchheEEECCcH-HHHHHHHHCCCeEEEEecC
Confidence 33444 4555554 89999995 89999999999 8899999999999999653
No 7
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.61 E-value=5.8e-15 Score=147.87 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=90.0
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.+...|++.++|+.|++.|++++++||++...++..++. .+|.+|||.|++.. ++.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~---------~gl~~~Fd~iv~~~---------------~~~ 161 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISL---------LGLSDFFQAVIIGS---------------ECE 161 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH---------cCChhhCcEEEecC---------------cCC
Confidence 356789999999999999999999999999999999985 47899999999988 444
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
.+|| ++.+|.. +++.+|+++++|+||||+. .||.+|+++|++|++|..
T Consensus 162 ~~KP---------~p~~~~~-----a~~~~~~~~~~~l~vgDs~-~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 162 HAKP---------HPDPYLK-----ALEVLKVSKDHTFVFEDSV-SGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred CCCC---------ChHHHHH-----HHHHhCCChhHEEEEcCCH-HHHHHHHHCCCEEEEEeC
Confidence 4455 4555544 8999999999999999999 789999999999999953
No 8
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.59 E-value=1.5e-14 Score=142.96 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=86.9
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
++...|++.++|+.|++.|++++++||++...+..+++. .+|.++||+|++... ..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~---------~~l~~~f~~i~~~~~---------------~~ 148 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQ---------LGWEQRCAVLIGGDT---------------LA 148 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH---------cCchhcccEEEecCc---------------CC
Confidence 566789999999999999999999999999999888875 478899999888662 22
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
.+|| .+++|. .+++.+|+++++|+||||+. .||.+|+++||+|++|.-
T Consensus 149 ~~KP---------~p~~~~-----~~~~~l~~~p~~~l~IGDs~-~Di~aA~~aG~~~i~v~~ 196 (229)
T PRK13226 149 ERKP---------HPLPLL-----VAAERIGVAPTDCVYVGDDE-RDILAARAAGMPSVAALW 196 (229)
T ss_pred CCCC---------CHHHHH-----HHHHHhCCChhhEEEeCCCH-HHHHHHHHCCCcEEEEee
Confidence 2333 344444 49999999999999999997 789999999999999954
No 9
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.59 E-value=1.2e-14 Score=137.64 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=82.5
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+.+.|+ .+.|..|++. ++++|+||++...++..++. .+|.+|||.|++.. ++..
T Consensus 87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~---------~~l~~~fd~i~~~~---------------~~~~ 140 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAH---------LGLRRYFDAVVAAD---------------DVQH 140 (188)
T ss_pred CCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHh---------CCcHhHceEEEehh---------------hccC
Confidence 344565 5889999865 79999999999999999985 47899999999877 3333
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
.|| .+++|.. +++.+|..+++|+||||+. .||.+|+++||+|++|.
T Consensus 141 ~KP---------~p~~~~~-----~~~~~~~~~~~~l~igDs~-~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 141 HKP---------APDTFLR-----CAQLMGVQPTQCVVFEDAD-FGIQAARAAGMDAVDVR 186 (188)
T ss_pred CCC---------ChHHHHH-----HHHHcCCCHHHeEEEeccH-hhHHHHHHCCCEEEeec
Confidence 444 4556655 8999999999999999996 77999999999999983
No 10
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.57 E-value=1.8e-14 Score=146.16 Aligned_cols=102 Identities=14% Similarity=0.239 Sum_probs=89.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|+++|++++|+||++..++..+++++ +|.+|||.|++.. +...
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~ii~~~---------------d~~~ 163 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV---------GMEGFFSVVLAAE---------------DVYR 163 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc---------CCHhhCcEEEecc---------------cCCC
Confidence 456899999999999999999999999999999999863 7999999999987 4444
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
+|| .+.+|.. +++.+|+++++|+||||+. .||.+|+++||++++|.
T Consensus 164 ~KP---------~Pe~~~~-----a~~~l~~~p~~~l~IgDs~-~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 164 GKP---------DPEMFMY-----AAERLGFIPERCIVFGNSN-SSVEAAHDGCMKCVAVA 209 (260)
T ss_pred CCC---------CHHHHHH-----HHHHhCCChHHeEEEcCCH-HHHHHHHHcCCEEEEEe
Confidence 555 5656655 9999999999999999997 67999999999999985
No 11
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.57 E-value=2.6e-14 Score=138.90 Aligned_cols=105 Identities=25% Similarity=0.330 Sum_probs=88.3
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.+...|++.++|+.|+++|.+++++||++...+..+++. .+|.+|||.|++.. +..
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~---------~gl~~~f~~i~~~~---------------~~~ 135 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKL---------TGLDEFFDVVITLD---------------DVE 135 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH---------cCChhceeEEEecC---------------cCC
Confidence 355779999999999999999999999999999999985 47899999999866 333
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
.+|| ++.+|. .+++.+|+++++|+||||+. .||.+|+++|+++++|...
T Consensus 136 ~~Kp---------~p~~~~-----~~~~~~~~~~~~~~~iGDs~-~Di~aa~~aG~~~i~v~~g 184 (214)
T PRK13288 136 HAKP---------DPEPVL-----KALELLGAKPEEALMVGDNH-HDILAGKNAGTKTAGVAWT 184 (214)
T ss_pred CCCC---------CcHHHH-----HHHHHcCCCHHHEEEECCCH-HHHHHHHHCCCeEEEEcCC
Confidence 3344 454444 48999999999999999998 8999999999999999643
No 12
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.56 E-value=3.5e-14 Score=136.94 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=88.2
Q ss_pred cccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeec
Q 008819 275 RYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 275 kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
+.+...|++.++|+.|+++|.+++++||++...+..+++. .+|.++||.|++.. +.
T Consensus 82 ~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~---------~~l~~~f~~~~~~~---------------~~ 137 (213)
T TIGR01449 82 ELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLEL---------LGLAKYFSVLIGGD---------------SL 137 (213)
T ss_pred ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH---------cCcHhhCcEEEecC---------------CC
Confidence 4567789999999999999999999999999999999985 47899999988765 33
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
..+|| .+.+|. .+++.+|+++++|+||||+. .|+.+|+++|+.+++|.
T Consensus 138 ~~~Kp---------~p~~~~-----~~~~~~~~~~~~~~~igDs~-~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 138 AQRKP---------HPDPLL-----LAAERLGVAPQQMVYVGDSR-VDIQAARAAGCPSVLLT 185 (213)
T ss_pred CCCCC---------ChHHHH-----HHHHHcCCChhHeEEeCCCH-HHHHHHHHCCCeEEEEc
Confidence 33344 344454 49999999999999999996 88999999999999995
No 13
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.56 E-value=6.8e-14 Score=136.90 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=88.5
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|++.|++++++||+....++.+++.+ ++.++||.+++.. +...
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~---------------~~~~ 146 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF---------DLRDYFDALASAE---------------KLPY 146 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC---------cchhcccEEEEcc---------------cCCC
Confidence 567799999999999999999999999999999999863 6889999999876 3333
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
+|| .+++| ..+++.+|+++++|+||||+. .||.+|+++|+++++|...
T Consensus 147 ~Kp---------~~~~~-----~~~~~~~~~~~~~~~~igDs~-~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 147 SKP---------HPEVY-----LNCAAKLGVDPLTCVALEDSF-NGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred CCC---------CHHHH-----HHHHHHcCCCHHHeEEEcCCh-hhHHHHHHcCCEEEEecCC
Confidence 444 34444 449999999999999999999 7999999999999999643
No 14
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.56 E-value=4.2e-14 Score=142.76 Aligned_cols=105 Identities=16% Similarity=0.092 Sum_probs=85.8
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCc-cEEEEcCCCCCCCCCCCcceeeec
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF-DVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyF-D~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
.+...|++.++|+.|+++|.+++|+||++...++.+++.+ ++.++| |.|++.. ++
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~---------~l~~~~~d~i~~~~---------------~~ 154 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA---------AAQGYRPDHVVTTD---------------DV 154 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH---------hhcCCCceEEEcCC---------------cC
Confidence 3567899999999999999999999999999999888753 455664 8888776 33
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~-g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
..+|| .+.+|.. +++.+|+. +++|+||||+. .||.+|+++|++|++|...
T Consensus 155 ~~~KP---------~p~~~~~-----a~~~l~~~~~~e~l~IGDs~-~Di~aA~~aG~~~i~v~~g 205 (267)
T PRK13478 155 PAGRP---------YPWMALK-----NAIELGVYDVAACVKVDDTV-PGIEEGLNAGMWTVGVILS 205 (267)
T ss_pred CCCCC---------ChHHHHH-----HHHHcCCCCCcceEEEcCcH-HHHHHHHHCCCEEEEEccC
Confidence 33444 4555544 89999996 68999999999 8899999999999999754
No 15
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.55 E-value=4e-14 Score=137.78 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=88.2
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCcc--CCccEEEEcCCCCCCCCCCCcceeeec
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWR--ELFDVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~--dyFD~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
+...|++.++|..|+++|+++.++||+....+..+++.+ +|. ++||.|++.. +.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~---------~l~~~~~f~~i~~~~---------------~~ 141 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL---------GWTVGDDVDAVVCPS---------------DV 141 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh---------hhhhhccCCEEEcCC---------------cC
Confidence 457899999999999999999999999999999999864 566 9999999987 33
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCcEE-EEEeccc
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRT-AAIIHEL 420 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~-g~eVLY~GDhi~gDI~~ak~~GwrT-~~VipEL 420 (552)
..+|| .+.+|.. +++.+|.+ +++|+||||+. .||.+|+++||+| ++|....
T Consensus 142 ~~~KP---------~p~~~~~-----a~~~~~~~~~~~~~~igD~~-~Di~aa~~aG~~~~i~~~~g~ 194 (220)
T TIGR03351 142 AAGRP---------APDLILR-----AMELTGVQDVQSVAVAGDTP-NDLEAGINAGAGAVVGVLTGA 194 (220)
T ss_pred CCCCC---------CHHHHHH-----HHHHcCCCChhHeEEeCCCH-HHHHHHHHCCCCeEEEEecCC
Confidence 34444 4555544 88999998 69999999998 7899999999999 8886543
No 16
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.53 E-value=5.4e-14 Score=149.63 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=90.2
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|+++|++++|+||++..+++.+++. .+|.+|||.|++.. |+..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~---------lgL~~yFd~Iv~sd---------------dv~~ 270 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGS---------IGIRGFFSVIVAAE---------------DVYR 270 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH---------cCCHHHceEEEecC---------------cCCC
Confidence 44679999999999999999999999999999999985 47899999999987 4444
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
+|| .+++|.. +++.+|+.+++|+||||+. .||.+|+++||++++|..
T Consensus 271 ~KP---------~Peifl~-----A~~~lgl~Peecl~IGDS~-~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 271 GKP---------DPEMFIY-----AAQLLNFIPERCIVFGNSN-QTVEAAHDARMKCVAVAS 317 (381)
T ss_pred CCC---------CHHHHHH-----HHHHcCCCcccEEEEcCCH-HHHHHHHHcCCEEEEECC
Confidence 555 5667766 9999999999999999998 579999999999999964
No 17
>PLN02940 riboflavin kinase
Probab=99.52 E-value=1e-13 Score=147.93 Aligned_cols=104 Identities=18% Similarity=0.310 Sum_probs=88.4
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|+++|++++++||++...+...++. ..+|.++||.|++.. ++..
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~--------~~gl~~~Fd~ii~~d---------------~v~~ 148 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISC--------HQGWKESFSVIVGGD---------------EVEK 148 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHh--------ccChHhhCCEEEehh---------------hcCC
Confidence 45679999999999999999999999999999887762 137899999999987 4434
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
+|| .+++|.. +++.+|+++++|++|||+. .||.+|+++|+++++|..
T Consensus 149 ~KP---------~p~~~~~-----a~~~lgv~p~~~l~VGDs~-~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 149 GKP---------SPDIFLE-----AAKRLNVEPSNCLVIEDSL-PGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred CCC---------CHHHHHH-----HHHHcCCChhHEEEEeCCH-HHHHHHHHcCCEEEEECC
Confidence 444 5556655 9999999999999999998 689999999999999954
No 18
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.51 E-value=2.1e-13 Score=133.05 Aligned_cols=101 Identities=11% Similarity=0.094 Sum_probs=82.7
Q ss_pred cccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCcc-EEEEcCCCCCCCCCCCcceeee
Q 008819 275 RYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFD-VVIAQANKPDFYTSDHPFRCYD 353 (552)
Q Consensus 275 kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD-~VIv~A~KP~FF~~~~pFr~vd 353 (552)
..+...|++.++|+.| +.++.++||++...++..++. .++.++|| .|+++. +
T Consensus 85 ~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~---------~~l~~~F~~~v~~~~---------------~ 137 (221)
T PRK10563 85 SELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGK---------TGMLHYFPDKLFSGY---------------D 137 (221)
T ss_pred ccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHh---------cChHHhCcceEeeHH---------------h
Confidence 3466789999999999 489999999999999998875 47888996 666654 3
Q ss_pred cCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 354 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 354 ~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
...+|| .+++|.. +++.+|+.+++|+||||+. .||.+|+++||+++++.
T Consensus 138 ~~~~KP---------~p~~~~~-----a~~~~~~~p~~~l~igDs~-~di~aA~~aG~~~i~~~ 186 (221)
T PRK10563 138 IQRWKP---------DPALMFH-----AAEAMNVNVENCILVDDSS-AGAQSGIAAGMEVFYFC 186 (221)
T ss_pred cCCCCC---------ChHHHHH-----HHHHcCCCHHHeEEEeCcH-hhHHHHHHCCCEEEEEC
Confidence 333444 5666666 9999999999999999998 78999999999999884
No 19
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.51 E-value=1.8e-13 Score=131.60 Aligned_cols=99 Identities=25% Similarity=0.360 Sum_probs=80.6
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
...|++.++|..|+++|++++++||++... ...++. .+|.++||.|+++. +...+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~---------~~l~~~fd~i~~s~---------------~~~~~ 159 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEA---------LGLLEYFDFVVTSY---------------EVGAE 159 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHH---------CCcHHhcceEEeec---------------ccCCC
Confidence 567999999999999999999999998754 555553 47889999999876 22333
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEE
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAA 415 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~ 415 (552)
|| .+.+|.. +++.+|+++++|+||||+...||.+|+++||+|+.
T Consensus 160 KP---------~~~~~~~-----~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 160 KP---------DPKIFQE-----ALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred CC---------CHHHHHH-----HHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 44 3445544 89999999999999999998899999999999873
No 20
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=135.78 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=94.5
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+.+-|++.++|+.|++.|+++++.|||+...+..+++- .+..+|||.+|+.+ |+..
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~---------~gl~~~f~~~v~~~---------------dv~~ 140 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLAR---------LGLLDYFDVIVTAD---------------DVAR 140 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHH---------ccChhhcchhccHH---------------HHhc
Confidence 45678999999999999999999999999999999985 36778999999999 7777
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
+|| .|++|.. +++.+|+.|.+|+.|+|+..| |.+++++|+++++|..
T Consensus 141 ~KP---------~Pd~yL~-----Aa~~Lgv~P~~CvviEDs~~G-i~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 141 GKP---------APDIYLL-----AAERLGVDPEECVVVEDSPAG-IQAAKAAGMRVVGVPA 187 (221)
T ss_pred CCC---------CCHHHHH-----HHHHcCCChHHeEEEecchhH-HHHHHHCCCEEEEecC
Confidence 888 8899988 999999999999999999998 9999999999999964
No 21
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.49 E-value=4e-13 Score=126.56 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=81.0
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|+++|++++|+||+.. ....++. .+|.++||.+++.. +...
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~---------~~l~~~f~~~~~~~---------------~~~~ 139 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEK---------LGLIDYFDAIVDPA---------------EIKK 139 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHh---------cCcHhhCcEEEehh---------------hcCC
Confidence 34679999999999999999999999853 3455653 47889999999876 3333
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
.|| .+++|.. +++.+|+++++|+||||+. .||.+|+++||+|++|
T Consensus 140 ~kp---------~p~~~~~-----~~~~~~~~~~~~v~vgD~~-~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 140 GKP---------DPEIFLA-----AAEGLGVSPSECIGIEDAQ-AGIEAIKAAGMFAVGV 184 (185)
T ss_pred CCC---------ChHHHHH-----HHHHcCCCHHHeEEEecCH-HHHHHHHHcCCEEEec
Confidence 344 4556655 8999999999999999997 8999999999999997
No 22
>PRK11587 putative phosphatase; Provisional
Probab=99.47 E-value=8.9e-13 Score=129.00 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=82.2
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.+...|++.++|+.|+++|++++++||++...+...+.. .++ .+||.|++.. +..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~---------~~l-~~~~~i~~~~---------------~~~ 135 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKA---------AGL-PAPEVFVTAE---------------RVK 135 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHh---------cCC-CCccEEEEHH---------------Hhc
Confidence 456789999999999999999999999999888766653 233 4678887765 222
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
..|| .+.+|.. +++.+|+.+++|+||||+. .||.+|+++|+.|++|-.
T Consensus 136 ~~KP---------~p~~~~~-----~~~~~g~~p~~~l~igDs~-~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 136 RGKP---------EPDAYLL-----GAQLLGLAPQECVVVEDAP-AGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred CCCC---------CcHHHHH-----HHHHcCCCcccEEEEecch-hhhHHHHHCCCEEEEECC
Confidence 3344 4555555 8899999999999999998 679999999999999954
No 23
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.46 E-value=6.5e-13 Score=130.85 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=87.3
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
...+.|++.+.|..|+++|.+++++||.+...++.+++. .++.+|||+|++.+ +..
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~---------~gl~~~F~~i~g~~---------------~~~ 142 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKA---------LGLADYFDVIVGGD---------------DVP 142 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHH---------hCCccccceEEcCC---------------CCC
Confidence 567899999999999999999999999999999999996 37889999999944 111
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
..|| .+ -.+..+++.+|..+++++||||+. .||.+|+++|..+++|-..-
T Consensus 143 ~~KP---------~P-----~~l~~~~~~~~~~~~~~l~VGDs~-~Di~aA~~Ag~~~v~v~~g~ 192 (220)
T COG0546 143 PPKP---------DP-----EPLLLLLEKLGLDPEEALMVGDSL-NDILAAKAAGVPAVGVTWGY 192 (220)
T ss_pred CCCc---------CH-----HHHHHHHHHhCCChhheEEECCCH-HHHHHHHHcCCCEEEEECCC
Confidence 1222 22 124558889999977999999999 78999999999999997643
No 24
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.45 E-value=6.7e-13 Score=125.07 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=82.2
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.+...|++.++|+.|+++|.+++++||+ ..++.+++. .+|.+|||.|++.. +..
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~---------~~l~~~f~~v~~~~---------------~~~ 139 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAK---------LGLTDYFDAIVDAD---------------EVK 139 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHH---------cChHHHCCEeeehh---------------hCC
Confidence 4678999999999999999999999999 667877774 47889999998865 222
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
..|| .+.+|. .+++.+|.++++|+||||+. .||.+|+++||+|++|
T Consensus 140 ~~kp---------~~~~~~-----~~~~~~~~~~~~~v~IgD~~-~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 140 EGKP---------HPETFL-----LAAELLGVSPNECVVFEDAL-AGVQAARAAGMFAVAV 185 (185)
T ss_pred CCCC---------ChHHHH-----HHHHHcCCCHHHeEEEeCcH-hhHHHHHHCCCeEeeC
Confidence 2233 344444 48899999999999999997 7899999999999986
No 25
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.45 E-value=7.9e-13 Score=128.46 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=85.0
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
..+.|++.++|+.|++.|++++++||+....+..+++. .+|.++||.+++.. +...
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~---------~~l~~~f~~~~~~~---------------~~~~ 147 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEA---------LGIADYFSVVIGGD---------------SLPN 147 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH---------cCCccCccEEEcCC---------------CCCC
Confidence 45789999999999999999999999999999988885 36888999988765 1112
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
+|+ .+.+ +..+++.++.++++|+||||+. .|+..|+++||.+++|..
T Consensus 148 ~kp---------~~~~-----~~~~~~~~~~~~~~~i~igD~~-~Di~~a~~~g~~~i~v~~ 194 (226)
T PRK13222 148 KKP---------DPAP-----LLLACEKLGLDPEEMLFVGDSR-NDIQAARAAGCPSVGVTY 194 (226)
T ss_pred CCc---------ChHH-----HHHHHHHcCCChhheEEECCCH-HHHHHHHHCCCcEEEECc
Confidence 233 3333 4459999999999999999997 899999999999999964
No 26
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.44 E-value=8.3e-13 Score=131.44 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=80.4
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.||+. .+++++||++.. ++ ..++.+|||.|++.. +...
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~---------~~gl~~~fd~i~~~~---------------~~~~ 161 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PE---------LFGLGDYFEFVLRAG---------------PHGR 161 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HH---------HCCcHHhhceeEecc---------------cCCc
Confidence 56789999999999975 889999998765 23 246788999999877 3333
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
.|| .+.+|.. +++.+|+.+++|+||||++..||.+|+++||+|+.|-+.
T Consensus 162 ~KP---------~p~~~~~-----a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~ 210 (238)
T PRK10748 162 SKP---------FSDMYHL-----AAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPE 210 (238)
T ss_pred CCC---------cHHHHHH-----HHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCC
Confidence 444 4555555 888999999999999999888999999999999999654
No 27
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.44 E-value=1.9e-12 Score=131.78 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=85.9
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.....|++.++|+.|+++|.+++|+||++...+..++.. .+|..+||.|++.. ++.
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~---------~~i~~~f~~i~~~d---------------~~~ 154 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQ---------MKIGRYFRWIIGGD---------------TLP 154 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHH---------cCcHhhCeEEEecC---------------CCC
Confidence 355679999999999999999999999999999988875 37888999988766 222
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
.+|+ ++.+| ..+++.+|+++++|++|||+. .||..|+++||+|++|.-
T Consensus 155 ~~Kp---------~p~~~-----~~~~~~~g~~~~~~l~IGD~~-~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 155 QKKP---------DPAAL-----LFVMKMAGVPPSQSLFVGDSR-SDVLAAKAAGVQCVALSY 202 (272)
T ss_pred CCCC---------CcHHH-----HHHHHHhCCChhHEEEECCCH-HHHHHHHHCCCeEEEEec
Confidence 2333 34344 448999999999999999996 899999999999999964
No 28
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.42 E-value=2e-12 Score=132.24 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=85.5
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.+...|++.++|+.|+++|.+++++||+...+++.+++. .+|.++||.|++....+
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~---------~gl~~~F~~vi~~~~~~--------------- 195 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQR---------QGLRSLFSVVQAGTPIL--------------- 195 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH---------cCChhheEEEEecCCCC---------------
Confidence 456789999999999999999999999999999999985 47889999987765110
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
. ++.+ +..+++.+++.+++|+||||+. .||.+|+++||++++|....
T Consensus 196 -~-----------k~~~-----~~~~l~~~~~~p~~~l~IGDs~-~Di~aA~~AG~~~I~v~~g~ 242 (273)
T PRK13225 196 -S-----------KRRA-----LSQLVAREGWQPAAVMYVGDET-RDVEAARQVGLIAVAVTWGF 242 (273)
T ss_pred -C-----------CHHH-----HHHHHHHhCcChhHEEEECCCH-HHHHHHHHCCCeEEEEecCC
Confidence 0 1223 3458889999999999999997 78999999999999996543
No 29
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.42 E-value=2.8e-12 Score=131.66 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=85.7
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|++.|++++|+||++...++.+++.+. +..|.++|++| ++. ++..
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~------~~~~~~~~~~v-~~~---------------~~~~ 200 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLL------GPERAQGLDVF-AGD---------------DVPK 200 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc------cccccCceEEE-ecc---------------ccCC
Confidence 4678999999999999999999999999999999988653 45667777776 433 2222
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
+|| .+++|.. +++.+|+++++|+||||+. .||.+|+++||++++|...
T Consensus 201 ~KP---------~p~~~~~-----a~~~~~~~p~~~l~IGDs~-~Di~aA~~aG~~~i~v~~g 248 (286)
T PLN02779 201 KKP---------DPDIYNL-----AAETLGVDPSRCVVVEDSV-IGLQAAKAAGMRCIVTKSS 248 (286)
T ss_pred CCC---------CHHHHHH-----HHHHhCcChHHEEEEeCCH-HhHHHHHHcCCEEEEEccC
Confidence 344 4445544 9999999999999999998 6899999999999999653
No 30
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.40 E-value=3.2e-12 Score=123.82 Aligned_cols=104 Identities=21% Similarity=0.291 Sum_probs=87.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|++|++. .+++++||+....+...++. .+|..+||.|++.. +...
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~---------~~l~~~fd~i~~~~---------------~~~~ 150 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRK---------SGLFPFFDDIFVSE---------------DAGI 150 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHH---------CCcHhhcCEEEEcC---------------ccCC
Confidence 45678999999999999 99999999999999998885 47889999999877 2222
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHh-CCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQIT-KWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~l-g~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
.|| .+.+|.. +++.+ |+++++|+||||+...||.+|+++||.++.+...
T Consensus 151 ~KP---------~~~~~~~-----~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~ 200 (224)
T TIGR02254 151 QKP---------DKEIFNY-----ALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPD 200 (224)
T ss_pred CCC---------CHHHHHH-----HHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCC
Confidence 333 3445554 89999 9999999999999878999999999999998654
No 31
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.37 E-value=6.5e-12 Score=122.07 Aligned_cols=107 Identities=24% Similarity=0.259 Sum_probs=91.2
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.+...|++.+.|+++++. ++++++||+....+...+..+ ++.++||.|++.. +..
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~---------gl~~~Fd~v~~s~---------------~~g 151 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL---------GLLDYFDAVFISE---------------DVG 151 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc---------CChhhhheEEEec---------------ccc
Confidence 456778999999999998 999999999988999888854 4889999999988 333
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccch
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELE 421 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe 421 (552)
..|| .+++|.. +++.+|+++++|++|||+...||.+|+++||+|+.|.++-.
T Consensus 152 ~~KP---------~~~~f~~-----~~~~~g~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~ 203 (229)
T COG1011 152 VAKP---------DPEIFEY-----ALEKLGVPPEEALFVGDSLENDILGARALGMKTVWINRGGK 203 (229)
T ss_pred cCCC---------CcHHHHH-----HHHHcCCCcceEEEECCChhhhhHHHHhcCcEEEEECCCCC
Confidence 3344 5677766 99999999999999999999999999999999998876543
No 32
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.32 E-value=2.3e-12 Score=117.97 Aligned_cols=104 Identities=20% Similarity=0.315 Sum_probs=88.5
Q ss_pred ccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeee
Q 008819 274 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYD 353 (552)
Q Consensus 274 ~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd 353 (552)
...+.+.|++.++|++|+++|.+++++||++...+...++.+ +|.++||.|++.. +
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~---------~~~~~f~~i~~~~---------------~ 128 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL---------GLDDYFDEIISSD---------------D 128 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT---------THGGGCSEEEEGG---------------G
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc---------ccccccccccccc---------------h
Confidence 366788999999999999999999999999999999999864 7779999999887 2
Q ss_pred cCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 354 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 354 ~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
....|| .+.+| ..+++.+|+++++|++|||+. .||.+|+++||+|+.|
T Consensus 129 ~~~~Kp---------~~~~~-----~~~~~~~~~~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 129 VGSRKP---------DPDAY-----RRALEKLGIPPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SSSSTT---------SHHHH-----HHHHHHHTSSGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred hhhhhh---------HHHHH-----HHHHHHcCCCcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 222233 33344 459999999999999999999 9999999999999987
No 33
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.30 E-value=3.4e-12 Score=122.48 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=88.0
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
...|++.++|++|+++|++++++||++...+...++. .+|.++||.|++.. ++...
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~---------~gl~~~fd~i~~s~---------------~~~~~ 147 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKH---------AGLDDPFDAVLSAD---------------AVRAY 147 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH---------CCChhhhheeEehh---------------hcCCC
Confidence 4679999999999999999999999999999998885 36889999999876 33333
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
|| .+.+|.. +++.+|+.+++|++|||+. .||.+|+++||+|+.|.+.
T Consensus 148 KP---------~~~~~~~-----~~~~~~~~p~~~~~vgD~~-~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 148 KP---------APQVYQL-----ALEALGVPPDEVLFVASNP-WDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred CC---------CHHHHHH-----HHHHhCCChhhEEEEeCCH-HHHHHHHHCCCcEEEecCC
Confidence 44 4555655 9999999999999999999 8999999999999999764
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=4.7e-11 Score=141.93 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=88.4
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCcc-CCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWR-ELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~-dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
..|++.++|+.|+++|++++++||++...++.+++. .+|. .|||.|++.. +...+
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~---------~gl~~~~Fd~iv~~~---------------~~~~~ 217 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAA---------AGLPLSMFDAIVSAD---------------AFENL 217 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHH---------cCCChhHCCEEEECc---------------ccccC
Confidence 579999999999999999999999999999999985 3674 7999999877 34444
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
|| .+++|.. +++.+|+.+++|+||||.. .||.+|+++||++++|....
T Consensus 218 KP---------~Pe~~~~-----a~~~lgv~p~e~v~IgDs~-~Di~AA~~aGm~~I~v~~~~ 265 (1057)
T PLN02919 218 KP---------APDIFLA-----AAKILGVPTSECVVIEDAL-AGVQAARAAGMRCIAVTTTL 265 (1057)
T ss_pred CC---------CHHHHHH-----HHHHcCcCcccEEEEcCCH-HHHHHHHHcCCEEEEECCCC
Confidence 55 5666655 8999999999999999998 67999999999999998653
No 35
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.27 E-value=1.5e-11 Score=115.16 Aligned_cols=100 Identities=30% Similarity=0.359 Sum_probs=81.4
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|++.|++++++||++... ...... .++.++||.|+++. +...
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~---------~~l~~~f~~i~~~~---------------~~~~ 138 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE---------LGLRDLFDVVIFSG---------------DVGR 138 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh---------cCCHHHCCEEEEcC---------------CCCC
Confidence 6678999999999999999999999999988 544432 36778999999865 2223
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
+|| .+.+|. .+++.+|+++++|++|||+. .||.+|+++||+|++|
T Consensus 139 ~KP---------~~~~~~-----~~~~~~~~~~~~~~~vgD~~-~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 139 GKP---------DPDIYL-----LALKKLGLKPEECLFVDDSP-AGIEAAKAAGMHTVLV 183 (183)
T ss_pred CCC---------CHHHHH-----HHHHHcCCCcceEEEEcCCH-HHHHHHHHcCCEEEeC
Confidence 343 344444 48999999999999999999 5899999999999986
No 36
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.25 E-value=6.6e-12 Score=121.20 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=86.3
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
...|++.++|+.|++.|++++++||++...+...+.. ..+|.++||.|++.. +...+
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~--------~~~l~~~fd~v~~s~---------------~~~~~ 140 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEE--------YPEVRAAADHIYLSQ---------------DLGMR 140 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhh--------chhHHHhcCEEEEec---------------ccCCC
Confidence 3579999999999999999999999998877655443 236888999999987 44445
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
|| .+++|.. +++.+|+++++|+||||+. .||.+|+++||+|+.|-.
T Consensus 141 KP---------~p~~~~~-----~~~~~~~~p~~~l~vgD~~-~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 141 KP---------EARIYQH-----VLQAEGFSAADAVFFDDNA-DNIEAANALGITSILVTD 186 (199)
T ss_pred CC---------CHHHHHH-----HHHHcCCChhHeEEeCCCH-HHHHHHHHcCCEEEEecC
Confidence 55 5667766 9999999999999999998 569999999999999854
No 37
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.25 E-value=7.9e-12 Score=123.71 Aligned_cols=102 Identities=15% Similarity=0.226 Sum_probs=86.2
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|+++|++++++||++...+...++. .+|.++||.|++.. +...
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~---------~~l~~~fd~iv~s~---------------~~~~ 147 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEH---------TGLDAHLDLLLSTH---------------TFGY 147 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHH---------CCcHHHCCEEEEee---------------eCCC
Confidence 56789999999999999999999999999999988875 47999999999877 3333
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEE-EEe
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTA-AII 417 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~-~Vi 417 (552)
+|| .+.+|.. +++.+|+++++|+||||+. .||.+|+++||+|+ +|.
T Consensus 148 ~KP---------~p~~~~~-----~~~~~~~~p~~~l~igDs~-~di~aA~~aG~~~~~~v~ 194 (224)
T PRK14988 148 PKE---------DQRLWQA-----VAEHTGLKAERTLFIDDSE-PILDAAAQFGIRYCLGVT 194 (224)
T ss_pred CCC---------CHHHHHH-----HHHHcCCChHHEEEEcCCH-HHHHHHHHcCCeEEEEEe
Confidence 444 4556655 8999999999999999999 57999999999975 453
No 38
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.25 E-value=4.4e-11 Score=130.27 Aligned_cols=101 Identities=11% Similarity=0.148 Sum_probs=81.9
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.||+.|++++|+||++.+++...+++ .+|.+|||.|++.. |+.
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~---------~~l~~~f~~i~~~d---------------~v~- 383 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSY---------YDLDQWVTETFSIE---------------QIN- 383 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHH---------CCcHhhcceeEecC---------------CCC-
Confidence 45689999999999999999999999999999999986 47889999998876 221
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
+++ +|.+|.. +++.+ .+++|+||||+. .||.+|+++|++|++|...
T Consensus 384 ~~~---------kP~~~~~-----al~~l--~~~~~v~VGDs~-~Di~aAk~AG~~~I~v~~~ 429 (459)
T PRK06698 384 SLN---------KSDLVKS-----ILNKY--DIKEAAVVGDRL-SDINAAKDNGLIAIGCNFD 429 (459)
T ss_pred CCC---------CcHHHHH-----HHHhc--CcceEEEEeCCH-HHHHHHHHCCCeEEEEeCC
Confidence 111 3334433 55554 578999999998 8899999999999999653
No 39
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.24 E-value=1.9e-11 Score=115.69 Aligned_cols=98 Identities=23% Similarity=0.317 Sum_probs=84.1
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCc
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDT 358 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk 358 (552)
..|++.+|+.++|++|.+++++||.....+......+ |-+ .|..|+||.-
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l-------~v~-------fi~~A~KP~~---------------- 96 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL-------GVP-------FIYRAKKPFG---------------- 96 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc-------CCc-------eeecccCccH----------------
Confidence 3589999999999999999999999999998776654 443 6788988821
Q ss_pred cccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccchhH
Q 008819 359 LAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESE 423 (552)
Q Consensus 359 ~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~E 423 (552)
-.+..+++.++.++++|++|||++++||.+++++|++|++|.|-...+
T Consensus 97 -----------------~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d 144 (175)
T COG2179 97 -----------------RAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPD 144 (175)
T ss_pred -----------------HHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEecccc
Confidence 126779999999999999999999999999999999999998865555
No 40
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.22 E-value=1.6e-10 Score=111.28 Aligned_cols=89 Identities=16% Similarity=0.056 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccc
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 360 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~ 360 (552)
+...++|+.|++.|.+++|+||++...++.+++. .+|.++||.|++.. +... ||
T Consensus 109 ~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~---------~gl~~~f~~~~~~~---------------~~~~-KP- 162 (197)
T TIGR01548 109 LTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTT---------HGLEILFPVQIWME---------------DCPP-KP- 162 (197)
T ss_pred cCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH---------cCchhhCCEEEeec---------------CCCC-Cc-
Confidence 3458999999999999999999999999999985 47889999998876 2222 33
Q ss_pred cccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccC
Q 008819 361 FTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKA 409 (552)
Q Consensus 361 ~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~ 409 (552)
.+.+| ..+++.+|+++++|+||||+. .||.+|+++
T Consensus 163 --------~p~~~-----~~~~~~~~~~~~~~i~vGD~~-~Di~aA~~a 197 (197)
T TIGR01548 163 --------NPEPL-----ILAAKALGVEACHAAMVGDTV-DDIITGRKA 197 (197)
T ss_pred --------CHHHH-----HHHHHHhCcCcccEEEEeCCH-HHHHHHHhC
Confidence 34344 448899999999999999999 689888653
No 41
>PRK09449 dUMP phosphatase; Provisional
Probab=99.22 E-value=1.6e-11 Score=119.84 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=85.8
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+.+.|++.++|+.|+ +|.+++++||++.+.+...++. .++.++||.|+++. ++..
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~---------~~l~~~fd~v~~~~---------------~~~~ 148 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLER---------TGLRDYFDLLVISE---------------QVGV 148 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHh---------CChHHHcCEEEEEC---------------ccCC
Confidence 457899999999999 6899999999999999988885 47889999999887 3333
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCC-CcEEEEcccccccccccccCCcEEEEEec
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNG-PEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g-~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
.|| .+.+|.. +++.+|+.+ ++|+||||+...||.+|+++||+|+.|.+
T Consensus 149 ~KP---------~p~~~~~-----~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 149 AKP---------DVAIFDY-----ALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNA 197 (224)
T ss_pred CCC---------CHHHHHH-----HHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECC
Confidence 344 4455554 899999865 78999999998899999999999999864
No 42
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.21 E-value=2.2e-11 Score=117.62 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=87.0
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.+...|++.++|++|+++|++++++||++..++...++. .+|.++||.|++.. +..
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~---------~~l~~~f~~i~~~~---------------~~~ 128 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEA---------LGLLPLFDHVIGSD---------------EVP 128 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHH---------cCChhheeeEEecC---------------cCC
Confidence 467789999999999999999999999999999998885 47889999988765 222
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
.+|| .+.+| ..+++.+|+++++|+||||+. .||.+|+++|+++++|..
T Consensus 129 ~~KP---------~~~~~-----~~~~~~~~~~~~~~l~igD~~-~Di~aA~~~Gi~~i~~~~ 176 (205)
T TIGR01454 129 RPKP---------APDIV-----REALRLLDVPPEDAVMVGDAV-TDLASARAAGTATVAALW 176 (205)
T ss_pred CCCC---------ChHHH-----HHHHHHcCCChhheEEEcCCH-HHHHHHHHcCCeEEEEEe
Confidence 2233 34344 458999999999999999998 799999999999999964
No 43
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.16 E-value=1.6e-10 Score=115.81 Aligned_cols=97 Identities=20% Similarity=0.271 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcccc
Q 008819 282 QVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAF 361 (552)
Q Consensus 282 ~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~~ 361 (552)
+..++|++||+.|..+.++||-+..+- .++. ..+...|||.||+++ ...--||
T Consensus 117 ~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~---------~~~l~~~fD~vv~S~---------------e~g~~KP-- 169 (237)
T KOG3085|consen 117 GMQELLQKLRKKGTILGIISNFDDRLR-LLLL---------PLGLSAYFDFVVESC---------------EVGLEKP-- 169 (237)
T ss_pred HHHHHHHHHHhCCeEEEEecCCcHHHH-HHhh---------ccCHHHhhhhhhhhh---------------hhccCCC--
Confidence 344999999999977777777766655 3332 345568999999988 3322334
Q ss_pred ccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 362 TKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 362 ~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
.++||+- +++.+|+.|++|++|||....|+.+|+++||++++|.
T Consensus 170 -------Dp~If~~-----al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~ 213 (237)
T KOG3085|consen 170 -------DPRIFQL-----ALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVD 213 (237)
T ss_pred -------ChHHHHH-----HHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEc
Confidence 5778888 9999999999999999999999999999999999996
No 44
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.14 E-value=4.9e-11 Score=115.58 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=80.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|+++|++++++||++.......... . ..++.++||.|++.. +...
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~------~~~l~~~fd~v~~s~---------------~~~~ 150 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-L------PGDIMALFDAVVESC---------------LEGL 150 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-h------hhhhHhhCCEEEEee---------------ecCC
Confidence 45678999999999999999999999976543222111 1 236788999998765 2222
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
.|| .+.+|.. +++.+|+++++|+||||.. .||.+|+++||.|++|.+
T Consensus 151 ~KP---------~p~~~~~-----~~~~~g~~~~~~l~i~D~~-~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 151 RKP---------DPRIYQL-----MLERLGVAPEECVFLDDLG-SNLKPAAALGITTIKVSD 197 (211)
T ss_pred CCC---------CHHHHHH-----HHHHcCCCHHHeEEEcCCH-HHHHHHHHcCCEEEEECC
Confidence 333 4445544 9999999999999999987 779999999999999954
No 45
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.12 E-value=1.2e-10 Score=105.10 Aligned_cols=101 Identities=22% Similarity=0.265 Sum_probs=78.0
Q ss_pred ccccccchhHHHHHHHHHHcCCeEEEEeCCC--------hHhHHHhHhhhhccCCCCCCCccCCccEEEEcC--CCCCCC
Q 008819 274 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSP--------YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA--NKPDFY 343 (552)
Q Consensus 274 ~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~--------~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A--~KP~FF 343 (552)
.......|++.++|+.|+++|++++++||++ .+.+...++.+ +.. |+.+++.. .||
T Consensus 21 ~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-------~l~----~~~~~~~~~~~KP--- 86 (132)
T TIGR01662 21 EDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-------GVP----IDVLYACPHCRKP--- 86 (132)
T ss_pred HHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-------CCC----EEEEEECCCCCCC---
Confidence 3345678999999999999999999999999 77788887764 322 44444333 222
Q ss_pred CCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHh-CCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 344 TSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQIT-KWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 344 ~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~l-g~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
.+++ +..+++.+ ++++++|+||||+...||..|+++||+|++|-|
T Consensus 87 -------------------------~~~~-----~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~~ 132 (132)
T TIGR01662 87 -------------------------KPGM-----FLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVAP 132 (132)
T ss_pred -------------------------ChHH-----HHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEeeC
Confidence 2333 45599999 599999999999656999999999999999865
No 46
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.06 E-value=1.4e-10 Score=110.16 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=81.2
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
.+.+.|++.++|++|+ ++++++||++...+...++. .++.++||.|++.. ++.
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~---------~gl~~~fd~i~~~~---------------~~~ 134 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNR---------LGIEDCFDGIFCFD---------------TAN 134 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHH---------cCcHhhhCeEEEee---------------ccc
Confidence 4567899999999997 46999999999999999985 36889999999876 221
Q ss_pred c----CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 356 K----DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 356 ~----gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
. .|| .+++|.. +++.+|..+++|++|||+. .||.+|+++||+|++|
T Consensus 135 ~~~~~~KP---------~p~~~~~-----~~~~~~~~~~~~l~vgD~~-~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 135 PDYLLPKP---------SPQAYEK-----ALREAGVDPERAIFFDDSA-RNIAAAKALGMKTVLV 184 (184)
T ss_pred CccCCCCC---------CHHHHHH-----HHHHhCCCccceEEEeCCH-HHHHHHHHcCCEEeeC
Confidence 1 133 4445554 8999999999999999998 6899999999999875
No 47
>PLN02811 hydrolase
Probab=99.05 E-value=3.2e-10 Score=111.26 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=82.1
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHH-hHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDG-GMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~-vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
+...|++.++|+.|++.|+++.|+||+....+.. ..++ .+|.++||.|++... | ++.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~---------~~l~~~f~~i~~~~~-~------------~~~ 134 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRH---------GELFSLMHHVVTGDD-P------------EVK 134 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHccc---------HHHHhhCCEEEECCh-h------------hcc
Confidence 3457999999999999999999999998865543 3321 367889999888660 1 122
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhC---CCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITK---WNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg---~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
.+|| .+++|.. +++.+| +++++|+||||+. .|+.+|+++|++|++|...
T Consensus 135 ~~KP---------~p~~~~~-----a~~~~~~~~~~~~~~v~IgDs~-~di~aA~~aG~~~i~v~~~ 186 (220)
T PLN02811 135 QGKP---------APDIFLA-----AARRFEDGPVDPGKVLVFEDAP-SGVEAAKNAGMSVVMVPDP 186 (220)
T ss_pred CCCC---------CcHHHHH-----HHHHhCCCCCCccceEEEeccH-hhHHHHHHCCCeEEEEeCC
Confidence 3344 5656665 888886 9999999999999 6799999999999999543
No 48
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.02 E-value=6.3e-10 Score=110.71 Aligned_cols=107 Identities=12% Similarity=0.075 Sum_probs=82.7
Q ss_pred ccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEc--CCCCCCCCCCCccee
Q 008819 274 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQ--ANKPDFYTSDHPFRC 351 (552)
Q Consensus 274 ~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~--A~KP~FF~~~~pFr~ 351 (552)
.......|++.++|++|+++|++++++||++...+..++++.- ..++.+|||.++.. ..||
T Consensus 91 ~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~------~~~L~~~f~~~fd~~~g~KP----------- 153 (220)
T TIGR01691 91 ELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSD------AGNLTPYFSGYFDTTVGLKT----------- 153 (220)
T ss_pred CcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhcc------ccchhhhcceEEEeCcccCC-----------
Confidence 3335678999999999999999999999999999988887641 12555556544311 1233
Q ss_pred eecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 352 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 352 vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
.+++| ..+++.+|+++++||||||+. .||.+|+++||+|++|+.+-
T Consensus 154 -----------------~p~~y-----~~i~~~lgv~p~e~lfVgDs~-~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 154 -----------------EAQSY-----VKIAGQLGSPPREILFLSDII-NELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred -----------------CHHHH-----HHHHHHhCcChhHEEEEeCCH-HHHHHHHHcCCEEEEEECCC
Confidence 34344 449999999999999999997 88999999999999998654
No 49
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.01 E-value=5.8e-09 Score=102.84 Aligned_cols=193 Identities=18% Similarity=0.277 Sum_probs=134.0
Q ss_pred CccEEEEeccccccccCcchHHHHHHHHHHHHHHhcCCCccccCCCCCCCCccccceeecCCCeEEEecCCCceeecccc
Q 008819 107 NIQVYGFDYDYTLAHYSSNLQSLIYDLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCY 186 (552)
Q Consensus 107 ~i~~iGFDmDyTLa~Y~~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~Dp~F~iRGL~~D~~~GnlLKlD~~g~I~~~~~~ 186 (552)
+++|+-||+|-||+.=+..++.+.=+-+.+++|+++|.|++ ++
T Consensus 14 ~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e-------------------------~a------------ 56 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEE-------------------------EA------------ 56 (244)
T ss_pred cceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChh-------------------------hh------------
Confidence 89999999999999888888888888888999999999976 10
Q ss_pred cCCccCCHHHHHHHhCCccccCCccCCccccccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHhhhchhhH
Q 008819 187 FGRRKLSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVH 266 (552)
Q Consensus 187 hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~l~dlFslpe~~L~a~lvd~~~~~~~~~~~~~l~~DV~~Av~~vH~~G~lk 266 (552)
.+|. ++.-..||-. +|.++- .+..+|+..-+ ..|| |+
T Consensus 57 ---~~L~-~~~yk~YG~t------------------------~aGL~~----~~~~~d~deY~-------~~V~--~~-- 93 (244)
T KOG3109|consen 57 ---EELR-ESLYKEYGLT------------------------MAGLKA----VGYIFDADEYH-------RFVH--GR-- 93 (244)
T ss_pred ---HHHH-HHHHHHHhHH------------------------HHHHHH----hcccCCHHHHH-------HHhh--cc--
Confidence 1121 2223334321 122211 11111111000 0122 22
Q ss_pred HHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCC-CCCCCCC
Q 008819 267 RGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQAN-KPDFYTS 345 (552)
Q Consensus 267 ~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~-KP~FF~~ 345 (552)
.|-.++.||+.|+++|-.|+..+ ..+.||++...+.+++++| +..|.||.||+... -|.
T Consensus 94 -----LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~L---------GieDcFegii~~e~~np~---- 153 (244)
T KOG3109|consen 94 -----LPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKL---------GIEDCFEGIICFETLNPI---- 153 (244)
T ss_pred -----CcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHh---------ChHHhccceeEeeccCCC----
Confidence 26667899999999999999876 5778999999999999986 77899999998760 010
Q ss_pred CCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 346 DHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 346 ~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~-g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
..||-+ || . ...++.+++..|+. +.++++|.|++-. |.+|++.||+|++|-.|-
T Consensus 154 ~~~~vc------KP---------~-----~~afE~a~k~agi~~p~~t~FfDDS~~N-I~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 154 EKTVVC------KP---------S-----EEAFEKAMKVAGIDSPRNTYFFDDSERN-IQTAKEVGLKTVLVGREH 208 (244)
T ss_pred CCceee------cC---------C-----HHHHHHHHHHhCCCCcCceEEEcCchhh-HHHHHhccceeEEEEeee
Confidence 012211 11 1 14467799999998 9999999999966 999999999999996543
No 50
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.01 E-value=8.5e-10 Score=105.97 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=72.0
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|++|++.+ +++++||.+.......+..+ +...-|.++|+.|++....
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~-----~l~~~f~~~f~~i~~~~~~----------------- 129 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQF-----NLNALFPGAFSEVLMCGHD----------------- 129 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhC-----CHHHhCCCcccEEEEeccC-----------------
Confidence 557899999999999986 57888998776665455432 0011223477777766610
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccC--CcEEEEEecc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKA--GWRTAAIIHE 419 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~--GwrT~~VipE 419 (552)
++ ++++| ..+++.+| +++|+||||+..+ |.+|+++ ||.|++|..+
T Consensus 130 -~~---------kp~~~-----~~a~~~~~--~~~~v~vgDs~~d-i~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 130 -ES---------KEKLF-----IKAKEKYG--DRVVCFVDDLAHN-LDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred -cc---------cHHHH-----HHHHHHhC--CCcEEEeCCCHHH-HHHHHHHHcCCcEEEecch
Confidence 11 23334 44888898 7889999999955 9999998 9999999655
No 51
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.97 E-value=3.8e-10 Score=108.60 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=80.3
Q ss_pred cccccchhHHHHHHHHHHcCCeEEEEeCC-ChHhHHHhHhhhhccCCCCCCCcc---------CCccEEEEcCCCCCCCC
Q 008819 275 RYLVKNGQVLQFVKMLREKGKKLFLLTNS-PYYFVDGGMRFMLEDSTGYTDSWR---------ELFDVVIAQANKPDFYT 344 (552)
Q Consensus 275 kYi~k~p~l~~~L~~Lk~~GkklfLiTNS-~~~y~~~vM~yl~~~~~~~g~~W~---------dyFD~VIv~A~KP~FF~ 344 (552)
.-+...|++.++|+.|+++|++++++||+ +..++..+|.++ ++. ++||.|++.. +|
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~---------~l~~~~~~~~~~~~Fd~iv~~~-~~---- 107 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTF---------EITYAGKTVPMHSLFDDRIEIY-KP---- 107 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhC---------CcCCCCCcccHHHhceeeeecc-CC----
Confidence 34566799999999999999999999999 999999999864 455 8999999876 22
Q ss_pred CCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHh--CCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 345 SDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQIT--KWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 345 ~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~l--g~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
...++ .+.+ +..+.+.. |+.+++|+||||+. .||.+|+++|++|++|..
T Consensus 108 ----------~~~kp---------~~~i-----~~~~~~~~~~gl~p~e~l~VgDs~-~di~aA~~aGi~~i~v~~ 158 (174)
T TIGR01685 108 ----------NKAKQ---------LEMI-----LQKVNKVDPSVLKPAQILFFDDRT-DNVREVWGYGVTSCYCPS 158 (174)
T ss_pred ----------chHHH---------HHHH-----HHHhhhcccCCCCHHHeEEEcChh-HhHHHHHHhCCEEEEcCC
Confidence 00011 1111 22244444 68999999999999 669999999999999954
No 52
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.93 E-value=1.8e-09 Score=102.43 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=81.3
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCC---------------hHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCC
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSP---------------YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKP 340 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~---------------~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP 340 (552)
.+...|++.++|++|+++|.+++++||.+ ..++..+++. .++. ||.++++..+|
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~---------~gl~--fd~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRS---------QGII--FDDVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH---------CCCc--eeEEEECCCCC
Confidence 56778999999999999999999999973 5566666664 3453 87665543222
Q ss_pred CCCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec-c
Q 008819 341 DFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH-E 419 (552)
Q Consensus 341 ~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip-E 419 (552)
. + +....|| .+ +-+..+++.+|.++++|+||||.. .|+..|+++||.+++|.+ |
T Consensus 96 ~---~-------~~~~~KP---------~~-----~~~~~~~~~~~~~~~e~l~IGD~~-~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 96 D---D-------NCDCRKP---------KI-----KLLEPYLKKNLIDKARSYVIGDRE-TDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred C---C-------CCCCCCC---------CH-----HHHHHHHHHcCCCHHHeEEEeCCH-HHHHHHHHCCCeEEEEChhh
Confidence 1 0 1111122 23 335568999999999999999996 899999999999999964 5
Q ss_pred chhH
Q 008819 420 LESE 423 (552)
Q Consensus 420 Le~E 423 (552)
|..+
T Consensus 151 ~~~~ 154 (161)
T TIGR01261 151 LNWD 154 (161)
T ss_pred cCHH
Confidence 5544
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.91 E-value=9.3e-10 Score=101.91 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=71.9
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCCh---------------HhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCC
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPY---------------YFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDF 342 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~---------------~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~F 342 (552)
...|++.++|+.|+++|++++++||++. ..+..+++.+ ++. |+.++.....+.-
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~--~~~~~~~~~~~~~ 95 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL---------GVA--VDGVLFCPHHPAD 95 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC---------CCc--eeEEEECCCCCCC
Confidence 5689999999999999999999999984 4455555542 322 2222221100000
Q ss_pred CCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 343 YTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 343 F~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
+....|| .+++| ..+++.+|+++++|+||||+ ..||.+|+++||+|++|.
T Consensus 96 ----------~~~~~KP---------~~~~~-----~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~~Gi~~v~i~ 145 (147)
T TIGR01656 96 ----------NCSCRKP---------KPGLI-----LEALKRLGVDASRSLVVGDR-LRDLQAARNAGLAAVLLV 145 (147)
T ss_pred ----------CCCCCCC---------CHHHH-----HHHHHHcCCChHHEEEEcCC-HHHHHHHHHCCCCEEEec
Confidence 0111223 34444 44999999999999999999 588999999999999985
No 54
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.90 E-value=2.2e-09 Score=102.12 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=75.0
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCC-hHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSP-YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~-~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
....|++.++|+.|++.|++++++||++ ...+..+.+.+ ++.. +....||
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~---------gl~~-----~~~~~KP--------------- 92 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL---------GIPV-----LPHAVKP--------------- 92 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc---------CCEE-----EcCCCCC---------------
Confidence 3457899999999999999999999998 56666555532 2211 1223344
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
.+.+ +..+++.+|+++++|+||||+++.||.+|+++||.|++|-+..
T Consensus 93 -------------~p~~-----~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~ 139 (170)
T TIGR01668 93 -------------PGCA-----FRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLV 139 (170)
T ss_pred -------------ChHH-----HHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEccCc
Confidence 2323 4458999999999999999999999999999999999997655
No 55
>PRK06769 hypothetical protein; Validated
Probab=98.90 E-value=1.3e-09 Score=104.05 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=71.8
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChH---------hHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCC
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYY---------FVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDH 347 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~---------y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~ 347 (552)
+...|++.++|++|++.|++++++||++.. +.. .++. .++.++|+.++..+ +
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~-~l~~---------~g~~~~~~~~~~~~-------~-- 87 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQ-ELKG---------FGFDDIYLCPHKHG-------D-- 87 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHH-HHHh---------CCcCEEEECcCCCC-------C--
Confidence 456799999999999999999999999742 222 1221 22222322222111 0
Q ss_pred cceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 348 PFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 348 pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
+....|| .+++ +..+++.+|.++++|+||||+. .||.+|+++||.+++|.+.-
T Consensus 88 -----~~~~~KP---------~p~~-----~~~~~~~l~~~p~~~i~IGD~~-~Di~aA~~aGi~~i~v~~g~ 140 (173)
T PRK06769 88 -----GCECRKP---------STGM-----LLQAAEKHGLDLTQCAVIGDRW-TDIVAAAKVNATTILVRTGA 140 (173)
T ss_pred -----CCCCCCC---------CHHH-----HHHHHHHcCCCHHHeEEEcCCH-HHHHHHHHCCCeEEEEecCC
Confidence 0011222 3333 4559999999999999999998 89999999999999997643
No 56
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.87 E-value=3.9e-09 Score=100.49 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=73.7
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCCh----HhHH-------HhHhhhhccCCCCCCCccCCccEEEEcCCCCC---
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPY----YFVD-------GGMRFMLEDSTGYTDSWRELFDVVIAQANKPD--- 341 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~----~y~~-------~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~--- 341 (552)
-+...|++.++|++|+++|++++++||++. .++. ..+..++ ....-. ||.++....-+.
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~-~~~i~~~~~~~~~~~ 96 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL------AERDVD-LDGIYYCPHHPEGVE 96 (176)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH------HHcCCC-ccEEEECCCCCcccc
Confidence 345679999999999999999999999984 1222 1111111 111111 677665431110
Q ss_pred CCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEE-EEEec
Q 008819 342 FYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRT-AAIIH 418 (552)
Q Consensus 342 FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT-~~Vip 418 (552)
.|++ +...+|| .+.+| ..+++.+|+++++|+||||+. .||.+|+++||+| ++|-.
T Consensus 97 ~~~~-------~~~~~KP---------~p~~~-----~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~aG~~~~i~v~~ 152 (176)
T TIGR00213 97 EFRQ-------VCDCRKP---------KPGML-----LQARKELHIDMAQSYMVGDKL-EDMQAGVAAKVKTNVLVRT 152 (176)
T ss_pred cccC-------CCCCCCC---------CHHHH-----HHHHHHcCcChhhEEEEcCCH-HHHHHHHHCCCcEEEEEec
Confidence 0000 1112333 34444 459999999999999999997 7899999999999 56643
No 57
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.84 E-value=7.1e-09 Score=98.91 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=74.9
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCCh---------------HhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCC
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPY---------------YFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPD 341 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~---------------~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~ 341 (552)
+.+.|++.++|++|++.|++++++||++. +.+..+++. .++ +||.+++...-+.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~g~--~f~~i~~~~~~~~ 96 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLAD---------RGG--RLDGIYYCPHHPE 96 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH---------cCC--ccceEEECCCCCC
Confidence 45679999999999999999999999973 222222221 122 4787775431000
Q ss_pred CCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 342 FYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 342 FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
- +...+|| .+.+|.. +++.+|+.+++|+||||+. .||.+|+++||++++|...
T Consensus 97 ~----------~~~~~KP---------~p~~~~~-----~~~~l~~~~~~~~~VgDs~-~Di~~A~~aG~~~i~v~~g 149 (181)
T PRK08942 97 D----------GCDCRKP---------KPGMLLS-----IAERLNIDLAGSPMVGDSL-RDLQAAAAAGVTPVLVRTG 149 (181)
T ss_pred C----------CCcCCCC---------CHHHHHH-----HHHHcCCChhhEEEEeCCH-HHHHHHHHCCCeEEEEcCC
Confidence 0 1112333 3445544 8999999999999999998 6999999999999998543
No 58
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.81 E-value=5.7e-09 Score=95.94 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=72.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 359 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~ 359 (552)
.|++.++|+.|++.|++++++||++...+...++++ +.++|+.|++.. ++. +||
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~----------l~~~f~~i~~~~---------------~~~-~Kp 119 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH----------LGDYFDLILGSD---------------EFG-AKP 119 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH----------HHhcCcEEEecC---------------CCC-CCc
Confidence 478999999999999999999999999999988862 446899888765 222 333
Q ss_pred ccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCC
Q 008819 360 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAG 410 (552)
Q Consensus 360 ~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~G 410 (552)
.+.+| ..+++.+|+++ +|+||||+. .|+.+|+++|
T Consensus 120 ---------~~~~~-----~~~~~~~~~~~-~~l~iGDs~-~Di~aa~~aG 154 (154)
T TIGR01549 120 ---------EPEIF-----LAALESLGLPP-EVLHVGDNL-NDIEGARNAG 154 (154)
T ss_pred ---------CHHHH-----HHHHHHcCCCC-CEEEEeCCH-HHHHHHHHcc
Confidence 34444 44889999998 999999995 8899998876
No 59
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=98.80 E-value=4.8e-08 Score=97.53 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=89.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 359 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~ 359 (552)
-||+..++..|+..|.++.|+|||+....+.-.++ ..++.+.|+.+|. ..-| ++..|||
T Consensus 94 ~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~--------~~~~~~~f~~~v~-~d~~------------~v~~gKP 152 (222)
T KOG2914|consen 94 MPGAEKLVNHLKNNGIPVALATSSTSASFELKISR--------HEDIFKNFSHVVL-GDDP------------EVKNGKP 152 (222)
T ss_pred CCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHH--------hhHHHHhcCCCee-cCCc------------cccCCCC
Confidence 45999999999999999999999999888887776 3578899998888 3223 6677888
Q ss_pred ccccccccCCCeeeccCcHHHHHHHhCCCC-CcEEEEcccccccccccccCCcEEEEEec
Q 008819 360 AFTKVDAFIPNKIYYHGCLKSFLQITKWNG-PEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 360 ~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g-~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
+|.+|.- +++++|..+ +.||+|+|.+-| |.+++.+||.+++|-.
T Consensus 153 ---------~Pdi~l~-----A~~~l~~~~~~k~lVfeds~~G-v~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 153 ---------DPDIYLK-----AAKRLGVPPPSKCLVFEDSPVG-VQAAKAAGMQVVGVAT 197 (222)
T ss_pred ---------CchHHHH-----HHHhcCCCCccceEEECCCHHH-HHHHHhcCCeEEEecC
Confidence 7888887 999999999 999999999999 9999999999999944
No 60
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.70 E-value=2.3e-08 Score=95.23 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=75.7
Q ss_pred hCcccccccchhHHHHHHHHHHcCCeEEEEeCCChH------------hHHHhHhhhhccCCCCCCCccCCccEEEEcCC
Q 008819 271 SDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYY------------FVDGGMRFMLEDSTGYTDSWRELFDVVIAQAN 338 (552)
Q Consensus 271 ~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~------------y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~ 338 (552)
.+|++.....|++.++|++|+++|++++++||++.. .+..+++.+ ++. ++.+++..
T Consensus 35 ~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~---------gl~--~~~ii~~~- 102 (166)
T TIGR01664 35 TSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL---------KVP--IQVLAATH- 102 (166)
T ss_pred CChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc---------CCC--EEEEEecC-
Confidence 356666667899999999999999999999998863 456666653 332 35555544
Q ss_pred CCCCCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhC--CCCCcEEEEcccc-------cccccccccC
Q 008819 339 KPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITK--WNGPEVIYFGDHL-------FSDLRGPSKA 409 (552)
Q Consensus 339 KP~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg--~~g~eVLY~GDhi-------~gDI~~ak~~ 409 (552)
+. ...|| .+ +.+..+++.+| +.+++++||||.. -.||.+|+++
T Consensus 103 -~~-------------~~~KP---------~p-----~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~a 154 (166)
T TIGR01664 103 -AG-------------LYRKP---------MT-----GMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNL 154 (166)
T ss_pred -CC-------------CCCCC---------cc-----HHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHC
Confidence 11 11122 23 33566889998 9999999999996 3799999999
Q ss_pred CcEEE
Q 008819 410 GWRTA 414 (552)
Q Consensus 410 GwrT~ 414 (552)
|+.++
T Consensus 155 Gi~~~ 159 (166)
T TIGR01664 155 GLEFK 159 (166)
T ss_pred CCCcC
Confidence 99885
No 61
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.65 E-value=8.4e-08 Score=89.26 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=75.7
Q ss_pred ccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeee
Q 008819 274 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYD 353 (552)
Q Consensus 274 ~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd 353 (552)
..++...|++.++|..|+ .|.+++++||++.++++.+++.+ +..+ .+||.|++.. |
T Consensus 41 ~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-------~~~~-~~f~~i~~~~---------------d 96 (148)
T smart00577 41 GVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-------DPKK-YFGYRRLFRD---------------E 96 (148)
T ss_pred EEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-------CcCC-CEeeeEEECc---------------c
Confidence 445667899999999998 57999999999999999999875 3332 4679999887 4
Q ss_pred cCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcE
Q 008819 354 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 412 (552)
Q Consensus 354 ~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gwr 412 (552)
+..+|+ . |.. .++.+|+++++|+||||+. .|+.+++++|..
T Consensus 97 ~~~~KP-----------~-~~k-----~l~~l~~~p~~~i~i~Ds~-~~~~aa~~ngI~ 137 (148)
T smart00577 97 CVFVKG-----------K-YVK-----DLSLLGRDLSNVIIIDDSP-DSWPFHPENLIP 137 (148)
T ss_pred ccccCC-----------e-Eee-----cHHHcCCChhcEEEEECCH-HHhhcCccCEEE
Confidence 433333 1 444 6788899999999999999 559888777643
No 62
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.65 E-value=3.4e-08 Score=85.99 Aligned_cols=117 Identities=25% Similarity=0.190 Sum_probs=84.2
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCC-cceeeec
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDH-PFRCYDT 354 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~-pFr~vd~ 354 (552)
.+...|++.++|++|+++|.+++++||+....+...++. .++..+|+.+++....+.+-.... +.-...+
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEE---------LGLDDYFDPVITSNGAAIYYPKEGLFLGGGPF 92 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHH---------cCCchhhhheeccchhhhhccccccccccccc
Confidence 356678999999999999999999999999999998885 366678888887774443311110 0000000
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
..+++ .+ +....+++.++..+++|++|||+. +|+..++++||++++|
T Consensus 93 ~~~~~---------~~-----~~~~~~~~~~~~~~~~~~~igD~~-~d~~~~~~~g~~~i~v 139 (139)
T cd01427 93 DIGKP---------NP-----DKLLAALKLLGVDPEEVLMVGDSL-NDIEMAKAAGGLGVAV 139 (139)
T ss_pred ccCCC---------CH-----HHHHHHHHHcCCChhhEEEeCCCH-HHHHHHHHcCCceeeC
Confidence 01111 11 224568888888899999999999 9999999999999975
No 63
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.56 E-value=5.5e-08 Score=88.50 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=69.5
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCC-ChHhHHHhHhhhhccCCCCC--CCccCCccEEEEcCCCCCCCCCCCcceeeec
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNS-PYYFVDGGMRFMLEDSTGYT--DSWRELFDVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS-~~~y~~~vM~yl~~~~~~~g--~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
...|++.++|+.||++|++++++||+ +..++..+++..-. .+ ..+.++||.+++...||
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~----~~~i~~l~~~f~~~~~~~~~p-------------- 90 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED----FGIIFPLAEYFDPLTIGYWLP-------------- 90 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc----cccchhhHhhhhhhhhcCCCc--------------
Confidence 35789999999999999999999999 89999998885310 00 11788999988886444
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhC--CCCCcEEEEcccccccccc
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITK--WNGPEVIYFGDHLFSDLRG 405 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg--~~g~eVLY~GDhi~gDI~~ 405 (552)
++++ +..+++.+| +.+++|+||||+... +..
T Consensus 91 --------------kp~~-----~~~a~~~lg~~~~p~~~l~igDs~~n-~~~ 123 (128)
T TIGR01681 91 --------------KSPR-----LVEIALKLNGVLKPKSILFVDDRPDN-NEE 123 (128)
T ss_pred --------------HHHH-----HHHHHHHhcCCCCcceEEEECCCHhH-HHH
Confidence 2223 344889999 999999999999944 543
No 64
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.56 E-value=2.6e-07 Score=93.11 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=77.4
Q ss_pred HHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCC----ChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCC
Q 008819 266 HRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNS----PYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPD 341 (552)
Q Consensus 266 k~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS----~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~ 341 (552)
...+.+.......+.+++.++|+.++++|.+++++||+ +...++.+++.+ ++.++|++|+++..
T Consensus 102 w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l---------Gi~~~f~~i~~~d~--- 169 (237)
T TIGR01672 102 WEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF---------HIPAMNPVIFAGDK--- 169 (237)
T ss_pred HHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh---------CCchheeEEECCCC---
Confidence 33444444556677778999999999999999999999 667888888753 56679998877651
Q ss_pred CCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 342 FYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 342 FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
....|+ . -..+++..|. ++||||++ .||.+|+++|.++++|..
T Consensus 170 ------------~~~~Kp----------~-------~~~~l~~~~i----~i~vGDs~-~DI~aAk~AGi~~I~V~~ 212 (237)
T TIGR01672 170 ------------PGQYQY----------T-------KTQWIQDKNI----RIHYGDSD-NDITAAKEAGARGIRILR 212 (237)
T ss_pred ------------CCCCCC----------C-------HHHHHHhCCC----eEEEeCCH-HHHHHHHHCCCCEEEEEe
Confidence 111111 0 0113444443 89999999 889999999999999953
No 65
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.48 E-value=3.1e-07 Score=97.58 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=76.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCC---------------ChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCC
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNS---------------PYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPD 341 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS---------------~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~ 341 (552)
+..+|++.++|++|+++|++++++||+ +..++..+++. .++ +||.|+.+...|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~---------~gl--~fd~i~i~~~~~- 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES---------QGI--KFDEVLICPHFP- 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH---------cCC--ceeeEEEeCCcC-
Confidence 678999999999999999999999995 23444444443 233 377666554111
Q ss_pred CCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 342 FYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 342 FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
++ +...+|| ++ +-+..+++.++..+++++||||.. +|+.+|+++||++++|-|
T Consensus 97 --sd-------~~~~rKP---------~p-----~~l~~a~~~l~v~~~~svmIGDs~-sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 97 --ED-------NCSCRKP---------KT-----GLVEEYLAEGAIDLANSYVIGDRE-TDVQLAENMGIKGIRYAR 149 (354)
T ss_pred --cc-------cCCCCCC---------CH-----HHHHHHHHHcCCCcccEEEEcCCH-HHHHHHHHCCCeEEEEEC
Confidence 00 1112233 23 335558888999999999999997 899999999999999966
No 66
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.47 E-value=4e-08 Score=92.20 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=69.7
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+.+.|++.++|+ ++.++||++..++...++. .++.++||.|++.. ++..
T Consensus 89 ~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~---------~~l~~~fd~v~~~~---------------~~~~ 137 (175)
T TIGR01493 89 LPPWPDSAAALA-------RVAILSNASHWAFDQFAQQ---------AGLPWYFDRAFSVD---------------TVRA 137 (175)
T ss_pred CCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHH---------CCCHHHHhhhccHh---------------hcCC
Confidence 346789999988 3789999999999998885 36888999988766 3333
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccccccc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSK 408 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~ 408 (552)
.|| .+.+|.. +++.+|+++++|++||||. .||.+|++
T Consensus 138 ~KP---------~p~~f~~-----~~~~~~~~p~~~l~vgD~~-~Di~~A~~ 174 (175)
T TIGR01493 138 YKP---------DPVVYEL-----VFDTVGLPPDRVLMVAAHQ-WDLIGARK 174 (175)
T ss_pred CCC---------CHHHHHH-----HHHHHCCCHHHeEeEecCh-hhHHHHhc
Confidence 455 5667766 8999999999999999996 78988865
No 67
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.47 E-value=4.4e-07 Score=86.49 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=76.5
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
...|++.++|+.|+++|.+++|+||+...+++.+++.+ ++..+|+.++.... -++++ | ++.
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~---------g~~~~~~~~~~~~~-~g~~~---p----~~~-- 140 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL---------NPDYVYSNELVFDE-KGFIQ---P----DGI-- 140 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh---------CCCeEEEEEEEEcC-CCeEe---c----cee--
Confidence 46789999999999999999999999999999999864 34567766554431 11110 1 000
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
+ ..+...+++ -+..+++.+|+++++|+||||+. .|+..++.+|+..++.
T Consensus 141 -~---~~~~~~k~~-----~~~~~~~~~~~~~~~~i~iGDs~-~D~~~a~~ag~~~a~~ 189 (201)
T TIGR01491 141 -V---RVTFDNKGE-----AVERLKRELNPSLTETVAVGDSK-NDLPMFEVADISISLG 189 (201)
T ss_pred -e---EEccccHHH-----HHHHHHHHhCCCHHHEEEEcCCH-hHHHHHHhcCCeEEEC
Confidence 0 000000111 24557788899999999999997 7899999999965543
No 68
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.42 E-value=2.4e-07 Score=94.78 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=81.5
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccC-CccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRE-LFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~d-yFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
...|++.++|++|++.|++++++||++...+..+++++ ++.+ +||.|++...-+.|..+ ...
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l---------~~~~~~f~~i~~~~~~~~~~~~--------~~~ 249 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL---------RQTDIWFDDLIGRPPDMHFQRE--------QGD 249 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH---------HHcCCchhhhhCCcchhhhccc--------CCC
Confidence 34789999999999999999999999999999999986 4454 89988777622222111 111
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCC-CCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKW-NGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~-~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
+|+ .+.++.. +++.++. .+++|+||||+. .||.+++++|+.+++|.+
T Consensus 250 ~kp---------~p~~~~~-----~l~~~~~~~~~~~~~vgD~~-~d~~~a~~~Gi~~i~v~~ 297 (300)
T PHA02530 250 KRP---------DDVVKEE-----IFWEKIAPKYDVLLAVDDRD-QVVDMWRRIGLECWQVAP 297 (300)
T ss_pred CCC---------cHHHHHH-----HHHHHhccCceEEEEEcCcH-HHHHHHHHhCCeEEEecC
Confidence 233 2333333 6666677 569999999999 569999999999999953
No 69
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.42 E-value=4.8e-08 Score=98.93 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcC-CCCCCCCCCCcceeeecCcCc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA-NKPDFYTSDHPFRCYDTEKDT 358 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A-~KP~FF~~~~pFr~vd~~~gk 358 (552)
.+++...+..|++.|++++++||++..+....+.. .++-.+|+.|.... .+|.+ .||
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~---------~g~g~~~~~i~~~~~~~~~~-------------~gK 179 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLA---------LDVGPFVTALEYATDTKATV-------------VGK 179 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCC---------CCchHHHHHHHHHhCCCcee-------------ecC
Confidence 46788889999999999999999999888655432 35667888776543 22322 144
Q ss_pred cccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 359 LAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 359 ~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
| .+.+|.. +++.+|.++++|++|||++..||..|+++||+|++|...
T Consensus 180 P---------~p~~~~~-----~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~G 226 (257)
T TIGR01458 180 P---------SKTFFLE-----ALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRTG 226 (257)
T ss_pred C---------CHHHHHH-----HHHHhCCChhhEEEECCCcHHHHHHHHHcCCeEEEECCC
Confidence 4 3445544 888899999999999999999999999999999999654
No 70
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.39 E-value=1.3e-06 Score=83.73 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=69.8
Q ss_pred cchhHHHHHHHHHHcCC--eEEEEeCCC-------hHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcc
Q 008819 279 KNGQVLQFVKMLREKGK--KLFLLTNSP-------YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPF 349 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~Gk--klfLiTNS~-------~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pF 349 (552)
-.|.+.+|++++++.+. +++++|||. ...++.+-+.+ |- .++...++||
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-------gI------pvl~h~~kKP--------- 117 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL-------GI------PVLRHRAKKP--------- 117 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh-------CC------cEEEeCCCCC---------
Confidence 35689999999999875 599999993 56666555543 32 3566678888
Q ss_pred eeeecCcCccccccccccCCCeeeccCcHHHHHHHhCC-----CCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 350 RCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKW-----NGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 350 r~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~-----~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
|+..++++.++. +++|+++|||.+++||..+++.|..|+.|-.
T Consensus 118 --------------------------~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~ 165 (168)
T PF09419_consen 118 --------------------------GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTD 165 (168)
T ss_pred --------------------------ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEec
Confidence 234445555543 4899999999999999999999999999854
No 71
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.35 E-value=2e-06 Score=86.73 Aligned_cols=108 Identities=16% Similarity=0.259 Sum_probs=78.5
Q ss_pred hHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCC----hHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCC
Q 008819 265 VHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSP----YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKP 340 (552)
Q Consensus 265 lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~----~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP 340 (552)
+.+++.++...+..+.|++.++|++|++.|.+++++||.+ ...++.+++.+ |..-.++|++++++.. +
T Consensus 101 fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-------gip~~~~f~vil~gd~-~ 172 (237)
T PRK11009 101 FWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-------HIPADNMNPVIFAGDK-P 172 (237)
T ss_pred HHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-------CCCcccceeEEEcCCC-C
Confidence 5566666677788899999999999999999999999954 55666666532 3322679998887661 1
Q ss_pred CCCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 341 DFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 341 ~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
.|+ ++ ...++..|+ ++||||+. +|+.+|+++|.++++|..
T Consensus 173 ----------------~K~----------~K-------~~~l~~~~i----~I~IGDs~-~Di~aA~~AGi~~I~v~~ 212 (237)
T PRK11009 173 ----------------GQY----------TK-------TQWLKKKNI----RIFYGDSD-NDITAAREAGARGIRILR 212 (237)
T ss_pred ----------------CCC----------CH-------HHHHHhcCC----eEEEcCCH-HHHHHHHHcCCcEEEEec
Confidence 011 00 113444443 99999999 889999999999999954
No 72
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.35 E-value=2.4e-06 Score=89.73 Aligned_cols=109 Identities=20% Similarity=0.133 Sum_probs=71.0
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|++.|.+++++||+...+++.+++.+ |. |.++..- -.+ .++. -+
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L-------gl------d~~~an~--lei-~dg~-------lt 236 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL-------RL------DAAVANE--LEI-MDGK-------LT 236 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc-------CC------CeEEEeE--EEE-ECCE-------EE
Confidence 457899999999999999999999999999999888754 22 2222210 000 0000 00
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEE
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTA 414 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~ 414 (552)
|+.....+..-.++.+ +.++++.+|+++++|++|||.. .|+..++.+|+-.+
T Consensus 237 g~v~g~iv~~k~K~~~-----L~~la~~lgi~~~qtIaVGDg~-NDl~m~~~AGlgiA 288 (322)
T PRK11133 237 GNVLGDIVDAQYKADT-----LTRLAQEYEIPLAQTVAIGDGA-NDLPMIKAAGLGIA 288 (322)
T ss_pred eEecCccCCcccHHHH-----HHHHHHHcCCChhhEEEEECCH-HHHHHHHHCCCeEE
Confidence 1000000000012222 5568899999999999999999 89999999998554
No 73
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.31 E-value=8.1e-07 Score=86.46 Aligned_cols=108 Identities=20% Similarity=0.175 Sum_probs=74.8
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+.+.|++.++|+.|+++|.+++++||+...++..+++.+ ++..+|+..+... .+.++. . ..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~---------~i~~~~~~~~~~~--~~~~~~-------~-~~ 144 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL---------GLDAAFANRLEVE--DGKLTG-------L-VE 144 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc---------CCCceEeeEEEEE--CCEEEE-------E-ec
Confidence 457899999999999999999999999999999998864 4555775433222 111100 0 00
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEE
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRT 413 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT 413 (552)
+.. .....++.+| ..+++..|+++++|+||||+. +|+..++++|+..
T Consensus 145 ~~~----~~~~~k~~~~-----~~~~~~~~~~~~~~i~iGDs~-~Di~aa~~ag~~i 191 (219)
T TIGR00338 145 GPI----VDASYKGKTL-----LILLRKEGISPENTVAVGDGA-NDLSMIKAAGLGI 191 (219)
T ss_pred Ccc----cCCcccHHHH-----HHHHHHcCCCHHHEEEEECCH-HHHHHHHhCCCeE
Confidence 000 0000023333 448888999999999999996 9999999999975
No 74
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.31 E-value=1.1e-07 Score=97.26 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=72.6
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcC-CCCCCCCCCCcceeeecCcCc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA-NKPDFYTSDHPFRCYDTEKDT 358 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A-~KP~FF~~~~pFr~vd~~~gk 358 (552)
++++.++|+.|++.|. ++++||.+..+....... -.+...+|+.+.... .+|. ..||
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~--------~~~~g~~~~~i~~~~g~~~~-------------~~gK 202 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSR--------TPGTGSLVAAIETASGRQPL-------------VVGK 202 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCc--------ccChHHHHHHHHHHhCCcee-------------ccCC
Confidence 5789999999998887 899999997654211110 113334666554321 1221 1244
Q ss_pred cccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 359 LAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 359 ~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
| .+.+|. .+++.+|.++++|++|||++.+||..|+++||+|++|-..
T Consensus 203 P---------~p~~~~-----~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V~~G 249 (279)
T TIGR01452 203 P---------SPYMFE-----CITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLVLSG 249 (279)
T ss_pred C---------CHHHHH-----HHHHHhCCChhhEEEECCChHHHHHHHHHcCCcEEEECCC
Confidence 4 333444 4888999999999999999999999999999999999543
No 75
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.27 E-value=2.5e-06 Score=83.83 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=69.8
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|+++|.+++++||+...+++.+++.++ .+ +.|++... -|+.+ +...
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~----------~~--~~i~~n~~---~~~~~------~~~~ 131 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLI----------PK--EQIYCNGS---DFSGE------YITI 131 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhC----------Cc--CcEEEeEE---EecCC------eeEE
Confidence 5678999999999999999999999999999999998643 11 22322110 01100 0000
Q ss_pred CccccccccccCCCee-----eccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 008819 357 DTLAFTKVDAFIPNKI-----YYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 411 (552)
Q Consensus 357 gk~~~~~v~~l~~g~v-----Y~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gw 411 (552)
+++ .+.+ .++.+-..+++.++..+++|+||||+. +|+.+|+++|+
T Consensus 132 ~kp---------~p~~~~~~~~~~~~K~~~l~~~~~~~~~~i~iGDs~-~Di~aa~~Ag~ 181 (219)
T PRK09552 132 TWP---------HPCDEHCQNHCGCCKPSLIRKLSDTNDFHIVIGDSI-TDLEAAKQADK 181 (219)
T ss_pred ecc---------CCccccccccCCCchHHHHHHhccCCCCEEEEeCCH-HHHHHHHHCCc
Confidence 111 0111 011223357788889999999999998 78999999999
No 76
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.22 E-value=4.1e-07 Score=90.93 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 359 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~ 359 (552)
.|++.++|+.|++.|.++ ++||++..+....+..+ +.-.+|+.+...+.+|. ..|||
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~---------~~g~~~~~i~~~g~~~~-------------~~gKP 196 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY---------GAGYYAELIKQLGGKVI-------------YSGKP 196 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe---------cccHHHHHHHHhCCcEe-------------cCCCC
Confidence 478899999998899986 89999999997665432 23346665422222331 13444
Q ss_pred ccccccccCCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCcEEEEEe
Q 008819 360 AFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 360 ~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~-g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
.+.+|. .+++.+|.. .++|++|||++..||..|+++||+|++|.
T Consensus 197 ---------~~~~~~-----~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 197 ---------YPAIFH-----KALKECSNIPKNRMLMVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred ---------CHHHHH-----HHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCeEEEEe
Confidence 344444 488888876 56899999999999999999999999983
No 77
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.14 E-value=1.7e-05 Score=74.70 Aligned_cols=110 Identities=14% Similarity=0.251 Sum_probs=69.8
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|++.|.++.++||+...+++.+++. .+|.++||.|++.. ..|.++..+ .+.+..
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~---------~~l~~~f~~i~~~~---~~~~~~g~~-~~~~~~ 137 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEG---------IGEKDVFIEIYSNP---ASFDNDGRH-IVWPHH 137 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH---------cCChhheeEEeccC---ceECCCCcE-EEecCC
Confidence 45678999999999999999999999999999999885 47889999988654 222211100 001100
Q ss_pred CccccccccccCCCeeeccCcHH-HHHHHhCCC-CCcEEEEcccccccccccccCC
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLK-SFLQITKWN-GPEVIYFGDHLFSDLRGPSKAG 410 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~-~l~~~lg~~-g~eVLY~GDhi~gDI~~ak~~G 410 (552)
.....+. . .|..+ +.++.+.-. +++|+||||+. +|+.+|++++
T Consensus 138 -------~~~~~~~-~--~g~~K~~~~~~~~~~~~~~~i~iGD~~-~D~~aa~~~d 182 (188)
T TIGR01489 138 -------CHGCCSC-P--CGCCKGKVIHKLSEPKYQHIIYIGDGV-TDVCPAKLSD 182 (188)
T ss_pred -------CCccCcC-C--CCCCHHHHHHHHHhhcCceEEEECCCc-chhchHhcCC
Confidence 0000000 0 01111 122222223 88999999999 8899888764
No 78
>PTZ00445 p36-lilke protein; Provisional
Probab=98.12 E-value=3e-06 Score=83.90 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHhCccccccc-chhHHHHHHHHHHcCCeEEEEeCCChHh---------------HHHh
Q 008819 248 IYEDVNRAIQHVHRRGLVHRGILSDPNRYLVK-NGQVLQFVKMLREKGKKLFLLTNSPYYF---------------VDGG 311 (552)
Q Consensus 248 l~~DV~~Av~~vH~~G~lk~~v~~np~kYi~k-~p~l~~~L~~Lk~~GkklfLiTNS~~~y---------------~~~v 311 (552)
+.-|.=..+--+|..|...+. +++..++.. .|.+..|+.+|++.|++++++|=|+..- ++..
T Consensus 46 Va~D~DnTlI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~ 123 (219)
T PTZ00445 46 IASDFDLTMITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAA 123 (219)
T ss_pred EEecchhhhhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHH
Confidence 334444556668998876665 667777776 5889999999999999999999998744 4444
Q ss_pred HhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccccccccccCCCee--eccCcHHHHHHHhCCCC
Q 008819 312 MRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKI--YYHGCLKSFLQITKWNG 389 (552)
Q Consensus 312 M~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~v--Y~~Gn~~~l~~~lg~~g 389 (552)
+++ + +- =|++..+.|-=|.|..+..-++++... || .+++ | .++.+++..|+.+
T Consensus 124 lk~----s---~~----~~~i~~~~~yyp~~w~~p~~y~~~gl~--KP---------dp~iK~y---Hle~ll~~~gl~p 178 (219)
T PTZ00445 124 LKK----S---KC----DFKIKKVYAYYPKFWQEPSDYRPLGLD--AP---------MPLDKSY---HLKQVCSDFNVNP 178 (219)
T ss_pred HHh----c---Cc----cceeeeeeeeCCcccCChhhhhhhccc--CC---------CccchHH---HHHHHHHHcCCCH
Confidence 443 1 11 367777777779998876444332211 12 2333 5 1366999999999
Q ss_pred CcEEEEcccccccccccccCCcEEEEEec
Q 008819 390 PEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 390 ~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
++||+|.|..-. |.+|++.||.|+.+.+
T Consensus 179 eE~LFIDD~~~N-VeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 179 DEILFIDDDMNN-CKNALKEGYIALHVTG 206 (219)
T ss_pred HHeEeecCCHHH-HHHHHHCCCEEEEcCC
Confidence 999999999966 9999999999999853
No 79
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.08 E-value=2.1e-06 Score=82.29 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=65.8
Q ss_pred HHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccccccccc
Q 008819 287 VKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDA 366 (552)
Q Consensus 287 L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~~~~v~~ 366 (552)
+..|++.|++++++||++...++..++.+ ++.++|+.+ ||
T Consensus 43 ~~~L~~~Gi~laIiT~k~~~~~~~~l~~l---------gi~~~f~~~-----kp-------------------------- 82 (169)
T TIGR02726 43 VIVLQLCGIDVAIITSKKSGAVRHRAEEL---------KIKRFHEGI-----KK-------------------------- 82 (169)
T ss_pred HHHHHHCCCEEEEEECCCcHHHHHHHHHC---------CCcEEEecC-----CC--------------------------
Confidence 56788899999999999999999999974 666788742 33
Q ss_pred cCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEE
Q 008819 367 FIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAA 415 (552)
Q Consensus 367 l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~ 415 (552)
++.+ +..+++.+|+++++|+||||+. .|+..++.+|+..+.
T Consensus 83 --kp~~-----~~~~~~~l~~~~~ev~~iGD~~-nDi~~~~~ag~~~am 123 (169)
T TIGR02726 83 --KTEP-----YAQMLEEMNISDAEVCYVGDDL-VDLSMMKRVGLAVAV 123 (169)
T ss_pred --CHHH-----HHHHHHHcCcCHHHEEEECCCH-HHHHHHHHCCCeEEC
Confidence 1112 5558999999999999999998 899999999976553
No 80
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.02 E-value=2.3e-05 Score=76.82 Aligned_cols=102 Identities=14% Similarity=0.192 Sum_probs=68.0
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCc---cEEEEcCCCCCCCCCCCcceee
Q 008819 276 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF---DVVIAQANKPDFYTSDHPFRCY 352 (552)
Q Consensus 276 Yi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyF---D~VIv~A~KP~FF~~~~pFr~v 352 (552)
.+...|++.++|+.|++.|.+++|+|||...+++.+++.+. . .++| +.++.+.. ++
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~-------~--~~~i~~n~~~~~~~~----~~-------- 126 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV-------E--KDRIYCNEADFSNEY----IH-------- 126 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC-------C--cccEEeceeEeeCCe----eE--------
Confidence 46678999999999999999999999999999999998642 1 1122 22222110 00
Q ss_pred ecCcCccccccccccCCCeeecc----Cc-HHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 008819 353 DTEKDTLAFTKVDAFIPNKIYYH----GC-LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 411 (552)
Q Consensus 353 d~~~gk~~~~~v~~l~~g~vY~~----Gn-~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gw 411 (552)
..++ .+..+.. |. -..+++.++..+++|+||||.. +|+.+++.+|+
T Consensus 127 ---~~~p---------~~~~~~~~~~cg~~K~~~l~~~~~~~~~~i~iGDg~-~D~~~a~~Ad~ 177 (214)
T TIGR03333 127 ---IDWP---------HPCDGTCQNQCGCCKPSLIRKLSEPNDYHIVIGDSV-TDVEAAKQSDL 177 (214)
T ss_pred ---EeCC---------CCCccccccCCCCCHHHHHHHHhhcCCcEEEEeCCH-HHHHHHHhCCe
Confidence 0011 1111100 22 2245666666889999999999 88999998988
No 81
>PRK11590 hypothetical protein; Provisional
Probab=98.02 E-value=0.00013 Score=71.66 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=62.8
Q ss_pred cccchhHHHHH-HHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC
Q 008819 277 LVKNGQVLQFV-KMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 277 i~k~p~l~~~L-~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
+...|++.+.| +.+++.|.+++++|||+..++..++.++ +|.. .|.+|+.. ..+ .-
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l---------~~~~-~~~~i~t~--l~~-----------~~ 150 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT---------PWLP-RVNLIASQ--MQR-----------RY 150 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc---------cccc-cCceEEEE--EEE-----------EE
Confidence 45589999999 5788899999999999999999999874 4433 34455332 110 01
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccc
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLR 404 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~ 404 (552)
+|+.. .+..|-.|=+..+.+.+|.+.+.+-..|||+ +|+-
T Consensus 151 tg~~~--------g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~-~D~p 190 (211)
T PRK11590 151 GGWVL--------TLRCLGHEKVAQLERKIGTPLRLYSGYSDSK-QDNP 190 (211)
T ss_pred ccEEC--------CccCCChHHHHHHHHHhCCCcceEEEecCCc-ccHH
Confidence 23321 1112322334455556666677788899999 9983
No 82
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.97 E-value=1.4e-05 Score=76.72 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=72.4
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccE-EEEcCCCCCCCCCCCcceeeecCcC
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDV-VIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~-VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
..|++.++|+.++++|.++.|+|||+..++..+++++ ++..+|.. +++.. -+.+ +|
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l---------g~~~~~~~~l~~~~--~g~~------------~g 144 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL---------GIDNAIGTRLEESE--DGIY------------TG 144 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc---------CCcceEecceEEcC--CCEE------------eC
Confidence 4689999999999999999999999999999999864 45556654 22211 0111 11
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
++...... .++++ ..+.++++..+.++++|+++||+. +|+..++.+|..+ +|.|
T Consensus 145 ~~~~~~~~--g~~K~---~~l~~~~~~~~~~~~~~~~~gDs~-~D~~~~~~a~~~~-~v~~ 198 (202)
T TIGR01490 145 NIDGNNCK--GEGKV---HALAELLAEEQIDLKDSYAYGDSI-SDLPLLSLVGHPY-VVNP 198 (202)
T ss_pred CccCCCCC--ChHHH---HHHHHHHHHcCCCHHHcEeeeCCc-ccHHHHHhCCCcE-EeCC
Confidence 11000000 00000 124556777788899999999999 8998888887544 4444
No 83
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.97 E-value=9.2e-06 Score=84.86 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=73.3
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCc
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDT 358 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk 358 (552)
..|++.++|..|++.|++++++||++...+..+++. ++......++|+.++.. .|| +
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~-----~~~~~~~~~~f~~~~~~-~~p------------k----- 88 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER-----RKDFILQAEDFDARSIN-WGP------------K----- 88 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh-----CccccCcHHHeeEEEEe-cCc------------h-----
Confidence 468999999999999999999999999999998885 11113566799998665 445 1
Q ss_pred cccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccC
Q 008819 359 LAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKA 409 (552)
Q Consensus 359 ~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~ 409 (552)
+ .++..+++.+|+.+++|+||||+.+ |+..++++
T Consensus 89 -----------~-----~~i~~~~~~l~i~~~~~vfidD~~~-d~~~~~~~ 122 (320)
T TIGR01686 89 -----------S-----ESLRKIAKKLNLGTDSFLFIDDNPA-ERANVKIT 122 (320)
T ss_pred -----------H-----HHHHHHHHHhCCCcCcEEEECCCHH-HHHHHHHH
Confidence 1 4577799999999999999999995 69887764
No 84
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.95 E-value=5.8e-06 Score=77.53 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=67.5
Q ss_pred HHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcccccccc
Q 008819 286 FVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVD 365 (552)
Q Consensus 286 ~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~~~~v~ 365 (552)
.|++|+++|.+++++||.+...+..+++.+ ++.++|+. .||
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~---------gi~~~~~~-----~~~------------------------- 76 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL---------GITHLYQG-----QSN------------------------- 76 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc---------CCCEEEec-----ccc-------------------------
Confidence 799999999999999999999999888864 45556652 122
Q ss_pred ccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 366 AFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 366 ~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
++ -.+..+++.+|+++++|+||||+. .|+..++.+|.. ++|.+-
T Consensus 77 ---k~-----~~~~~~~~~~~~~~~~~~~vGDs~-~D~~~~~~ag~~-~~v~~~ 120 (154)
T TIGR01670 77 ---KL-----IAFSDILEKLALAPENVAYIGDDL-IDWPVMEKVGLS-VAVADA 120 (154)
T ss_pred ---hH-----HHHHHHHHHcCCCHHHEEEECCCH-HHHHHHHHCCCe-EecCCc
Confidence 11 125568899999999999999998 899999999985 777543
No 85
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.93 E-value=8.7e-06 Score=77.78 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=70.5
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCC--CCCCCCCCCcceeeecCc
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQAN--KPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~--KP~FF~~~~pFr~vd~~~ 356 (552)
..|++.++|+.|+++|+++.++|+.+...+..+.+.+ | .++.+|.... ||
T Consensus 128 ~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-------g-----i~~~~v~a~~~~kP---------------- 179 (215)
T PF00702_consen 128 LRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-------G-----IFDSIVFARVIGKP---------------- 179 (215)
T ss_dssp BHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-------T-----SCSEEEEESHETTT----------------
T ss_pred chhhhhhhhhhhhccCcceeeeecccccccccccccc-------c-----cccccccccccccc----------------
Confidence 3579999999999999999999999999999999875 3 3566666664 55
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCC
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAG 410 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~G 410 (552)
.+++ +..+++.+++++.+|++|||.+ .|+.+++++|
T Consensus 180 ------------~~k~-----~~~~i~~l~~~~~~v~~vGDg~-nD~~al~~Ag 215 (215)
T PF00702_consen 180 ------------EPKI-----FLRIIKELQVKPGEVAMVGDGV-NDAPALKAAG 215 (215)
T ss_dssp ------------HHHH-----HHHHHHHHTCTGGGEEEEESSG-GHHHHHHHSS
T ss_pred ------------cchh-----HHHHHHHHhcCCCEEEEEccCH-HHHHHHHhCc
Confidence 1222 3459999999999999999999 9998888775
No 86
>PLN02954 phosphoserine phosphatase
Probab=97.91 E-value=5.1e-05 Score=74.11 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=69.3
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC-c
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE-K 356 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~-~ 356 (552)
...|++.++|+.|++.|.+++++||+...+++.+++.+ |.+-.++|+..+.... -+.... .+ ..++. .
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~-------gi~~~~~~~~~~~~~~-~g~~~g-~~--~~~~~~~ 152 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL-------GIPPENIFANQILFGD-SGEYAG-FD--ENEPTSR 152 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh-------CCChhhEEEeEEEEcC-CCcEEC-cc--CCCcccC
Confidence 35799999999999999999999999999999999864 3322246654322210 010000 00 00000 0
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
+++ ++.+ +..+++.+|. ++|+||||+. .|+.+++++|..+++..
T Consensus 153 ~~~---------K~~~-----i~~~~~~~~~--~~~i~iGDs~-~Di~aa~~~~~~~~~~~ 196 (224)
T PLN02954 153 SGG---------KAEA-----VQHIKKKHGY--KTMVMIGDGA-TDLEARKPGGADLFIGY 196 (224)
T ss_pred Ccc---------HHHH-----HHHHHHHcCC--CceEEEeCCH-HHHHhhhcCCCCEEEec
Confidence 000 1111 3345565653 6899999999 58988777777766543
No 87
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.91 E-value=6.5e-05 Score=77.26 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccch
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELE 421 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe 421 (552)
.+.+++.+|...++|+.|||++.+||..++++||.|++|.--..
T Consensus 196 ~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~ 239 (269)
T COG0647 196 YEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVS 239 (269)
T ss_pred HHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCC
Confidence 45688889998899999999999999999999999999977554
No 88
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.86 E-value=1.3e-05 Score=77.28 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccccccc
Q 008819 285 QFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKV 364 (552)
Q Consensus 285 ~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~~~~v 364 (552)
..++.|++.|++++++||.+...+..+++.+ ++..+|+ +.+| |
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l---------gl~~~f~-----g~~~-----------------k------ 97 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL---------GITHLYQ-----GQSN-----------------K------ 97 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc---------CCceeec-----CCCc-----------------H------
Confidence 3577888999999999999999999999864 3444553 1111 1
Q ss_pred cccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 365 DAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 365 ~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
+ ..+..+++.+|+++++|+||||++ .|+..++++|+. ++|
T Consensus 98 -----~-----~~l~~~~~~~gl~~~ev~~VGDs~-~D~~~a~~aG~~-~~v 137 (183)
T PRK09484 98 -----L-----IAFSDLLEKLAIAPEQVAYIGDDL-IDWPVMEKVGLS-VAV 137 (183)
T ss_pred -----H-----HHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHHCCCe-Eec
Confidence 1 236679999999999999999998 889999999998 444
No 89
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.84 E-value=4.4e-05 Score=73.41 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=67.1
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|..|+++ .+++++||+...+++.++..+ ++.++|+..+..... +.. +
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~---------gl~~~f~~~~~~~~~-~~i------------~ 123 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL---------GWPTLFCHSLEVDED-GMI------------T 123 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc---------CCchhhcceEEECCC-CeE------------E
Confidence 45679999999999999 899999999999999998864 566777654333200 000 0
Q ss_pred CccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 411 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gw 411 (552)
|.. ...+. ....+++.++..+.+|+||||+. .|+..++.+|.
T Consensus 124 ~~~-------~~~p~-----~k~~~l~~~~~~~~~~v~iGDs~-~D~~~~~aa~~ 165 (205)
T PRK13582 124 GYD-------LRQPD-----GKRQAVKALKSLGYRVIAAGDSY-NDTTMLGEADA 165 (205)
T ss_pred Ccc-------ccccc-----hHHHHHHHHHHhCCeEEEEeCCH-HHHHHHHhCCC
Confidence 000 00010 12235555666788999999998 88988777775
No 90
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.82 E-value=3.2e-05 Score=86.30 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=71.4
Q ss_pred HhCcccccccchhHHHHHHHHHHcCCeEEEEeCCCh------------HhHHHhHhhhhccCCCCCCCccCCccEEEEcC
Q 008819 270 LSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPY------------YFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA 337 (552)
Q Consensus 270 ~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~------------~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A 337 (552)
..+|+.+....|++.+.|.+|++.|++++++||.+. ..++.+++.+ |. .||++++..
T Consensus 189 ~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~l-------gi----pfdviia~~ 257 (526)
T TIGR01663 189 PKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKL-------GV----PFQVFIAIG 257 (526)
T ss_pred CCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHc-------CC----ceEEEEeCC
Confidence 356777777889999999999999999999999876 3466666653 32 389777544
Q ss_pred CCCCCCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhC----CCCCcEEEEcccccccccccccCC
Q 008819 338 NKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITK----WNGPEVIYFGDHLFSDLRGPSKAG 410 (552)
Q Consensus 338 ~KP~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg----~~g~eVLY~GDhi~gDI~~ak~~G 410 (552)
. ....|| .+ |-+..+++.++ ++.++++||||.. +|+.+++++|
T Consensus 258 ~---------------~~~RKP---------~p-----Gm~~~a~~~~~~~~~Id~~~S~~VGDaa-gr~~~g~~ag 304 (526)
T TIGR01663 258 A---------------GFYRKP---------LT-----GMWDHLKEEANDGTEIQEDDCFFVGDAA-GRPANGKAAG 304 (526)
T ss_pred C---------------CCCCCC---------CH-----HHHHHHHHhcCcccCCCHHHeEEeCCcc-cchHHHHhcC
Confidence 1 111122 12 45677888774 7889999999998 8886544433
No 91
>PRK10444 UMP phosphatase; Provisional
Probab=97.75 E-value=7e-05 Score=75.86 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
+..+++.++.++++|+||||++.+||..|+++||+|++|-...
T Consensus 180 ~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~ 222 (248)
T PRK10444 180 IRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGV 222 (248)
T ss_pred HHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCC
Confidence 4567888899999999999999999999999999999995443
No 92
>PLN02645 phosphoglycolate phosphatase
Probab=97.74 E-value=5.7e-06 Score=86.13 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCChHh-HHHhHhhhhccCCCCCCCccCCccEEEEcCC-CCCCCCCCCcceeeecCcCcc
Q 008819 282 QVLQFVKMLREKGKKLFLLTNSPYYF-VDGGMRFMLEDSTGYTDSWRELFDVVIAQAN-KPDFYTSDHPFRCYDTEKDTL 359 (552)
Q Consensus 282 ~l~~~L~~Lk~~GkklfLiTNS~~~y-~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~-KP~FF~~~~pFr~vd~~~gk~ 359 (552)
.+.....-|+.++..+|++||.+..+ ....+.+ .+.-.+|+.++.... +|.+ .|||
T Consensus 174 ~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~---------~g~g~~~~~i~~~~~~~~~~-------------~gKP 231 (311)
T PLN02645 174 KIQYATLCIRENPGCLFIATNRDAVTHLTDAQEW---------AGAGSMVGAIKGSTEREPLV-------------VGKP 231 (311)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCc---------cchHHHHHHHHHHhCCCccc-------------CCCC
Confidence 34444455554334699999999755 3333222 234457777766542 2221 2444
Q ss_pred ccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 360 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 360 ~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
.+.+|. .+++.+|+++++|+||||++..||..|+++||+|++|...
T Consensus 232 ---------~p~~~~-----~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G 277 (311)
T PLN02645 232 ---------STFMMD-----YLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 277 (311)
T ss_pred ---------hHHHHH-----HHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCC
Confidence 343444 4888899999999999999999999999999999999644
No 93
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.71 E-value=0.00017 Score=72.23 Aligned_cols=37 Identities=27% Similarity=0.556 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
+..+++.+|++.++|++|||+. .|+...+.+|+ .+++
T Consensus 204 l~~l~~~~gi~~~e~i~~GD~~-NDi~m~~~ag~-~vam 240 (272)
T PRK10530 204 LTQWVEAQGWSMKNVVAFGDNF-NDISMLEAAGL-GVAM 240 (272)
T ss_pred HHHHHHHcCCCHHHeEEeCCCh-hhHHHHHhcCc-eEEe
Confidence 7779999999999999999999 89998888886 3443
No 94
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.66 E-value=9.9e-06 Score=81.74 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 379 KSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 379 ~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
+.+++.+|+++++|++|||++..||..|+++||+|++|....
T Consensus 185 ~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~ 226 (249)
T TIGR01457 185 EKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGV 226 (249)
T ss_pred HHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCC
Confidence 348999999999999999999999999999999999996544
No 95
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.66 E-value=0.00011 Score=68.81 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=64.6
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.++++|.+++++|+|...++..++..+ ++..+|...+... .-+.++
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~---------g~~~~~~~~~~~~-~~g~~~------------ 129 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL---------GIDDVFANRLEFD-DNGLLT------------ 129 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc---------CCchheeeeEEEC-CCCEEe------------
Confidence 335789999999999999999999999999999999864 3334444332221 000110
Q ss_pred Ccccc-ccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccc
Q 008819 357 DTLAF-TKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPS 407 (552)
Q Consensus 357 gk~~~-~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak 407 (552)
|+... .......++ -.+.++++..|..+++|+||||+. +|+..++
T Consensus 130 g~~~~~~~~~~~~K~-----~~l~~~~~~~~~~~~~~~~iGDs~-~D~~~~~ 175 (177)
T TIGR01488 130 GPIEGQVNPEGECKG-----KVLKELLEESKITLKKIIAVGDSV-NDLPMLK 175 (177)
T ss_pred CccCCcccCCcchHH-----HHHHHHHHHhCCCHHHEEEEeCCH-HHHHHHh
Confidence 10000 000000001 124556777788899999999999 8886544
No 96
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=97.63 E-value=1.5e-05 Score=65.70 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=40.2
Q ss_pred cHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccch
Q 008819 377 CLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELE 421 (552)
Q Consensus 377 n~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe 421 (552)
-+..+++.+++.+++|++|||++..||..|+++||+|++|.....
T Consensus 9 ~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~ 53 (75)
T PF13242_consen 9 MLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVY 53 (75)
T ss_dssp HHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCC
Confidence 356699999999999999999999999999999999999976553
No 97
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.53 E-value=0.00026 Score=67.24 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=76.5
Q ss_pred CcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCccee
Q 008819 272 DPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRC 351 (552)
Q Consensus 272 np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~ 351 (552)
+..-|+.+-|++.++|..|.+. ..++|.|++...|++.+++.+- .+..+|+.++...
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ld--------p~~~~f~~~l~r~-------------- 92 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILD--------RGGKVISRRLYRE-------------- 92 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHC--------cCCCEEeEEEEcc--------------
Confidence 4577889999999999999987 9999999999999999999862 3445888887755
Q ss_pred eecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 352 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 352 vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
+.... .|. |. ..+..+|...++|++|||+.. |+..+...|..+..-.
T Consensus 93 -~~~~~-----------~~~-~~-----K~L~~l~~~~~~vIiVDD~~~-~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 93 -SCVFT-----------NGK-YV-----KDLSLVGKDLSKVIIIDNSPY-SYSLQPDNAIPIKSWF 139 (162)
T ss_pred -ccEEe-----------CCC-EE-----eEchhcCCChhhEEEEeCChh-hhccCccCEeecCCCC
Confidence 11100 111 22 245557888999999999994 4777766776655443
No 98
>PRK08238 hypothetical protein; Validated
Probab=97.45 E-value=0.00038 Score=77.07 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=69.9
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 359 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~ 359 (552)
.|++.++|++++++|.+++|+|||+..+++.+++++ + +||.|++.. +....++
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l---------G---lFd~Vigsd---------------~~~~~kg 126 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL---------G---LFDGVFASD---------------GTTNLKG 126 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc---------C---CCCEEEeCC---------------CccccCC
Confidence 478999999999999999999999999999999975 3 399998876 1111111
Q ss_pred ccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 360 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 360 ~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
+ +-...+.+.++ .+++.|+||+. .|+...+.+| +.++|-|.
T Consensus 127 ---------~------~K~~~l~~~l~--~~~~~yvGDS~-~Dlp~~~~A~-~av~Vn~~ 167 (479)
T PRK08238 127 ---------A------AKAAALVEAFG--ERGFDYAGNSA-ADLPVWAAAR-RAIVVGAS 167 (479)
T ss_pred ---------c------hHHHHHHHHhC--ccCeeEecCCH-HHHHHHHhCC-CeEEECCC
Confidence 0 11223444443 34599999999 8898888888 77788764
No 99
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.21 E-value=0.00067 Score=70.13 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=68.5
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+...|++.++|+.|+++|.+++++|++...+++.+++.+ +|.+.|+.|++.- =.|-.+ +.-+
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l---------gl~~~~~~IvSN~--L~f~~d-------Gvlt 181 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA---------GVYHPNVKVVSNF--MDFDED-------GVLK 181 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc---------CCCCcCceEEeee--EEECCC-------CeEe
Confidence 567899999999999999999999999999999999853 5666666665444 100000 1112
Q ss_pred CccccccccccCCCeeeccCc---HH-HHHHHhC--CCCCcEEEEcccccccccccc
Q 008819 357 DTLAFTKVDAFIPNKIYYHGC---LK-SFLQITK--WNGPEVIYFGDHLFSDLRGPS 407 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~Gn---~~-~l~~~lg--~~g~eVLY~GDhi~gDI~~ak 407 (552)
|++ .+-|-..+- +. ..++.++ ..+++|++|||+. +|+..+.
T Consensus 182 G~~---------~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~-~Dl~ma~ 228 (277)
T TIGR01544 182 GFK---------GPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQ-GDLRMAD 228 (277)
T ss_pred CCC---------CCcccccccHHHHHHHHHHHhCccCCcceEEEECcCh-hhhhHhc
Confidence 221 111111121 11 2455666 7889999999999 8897654
No 100
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.17 E-value=0.0006 Score=68.23 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=60.9
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHH--HhHhhhhccCCCCCCCccC-CccEEEEcCCCCCCCCCCCcceeeec
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVD--GGMRFMLEDSTGYTDSWRE-LFDVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~--~vM~yl~~~~~~~g~~W~d-yFD~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
.+.|++.++|++|+++|++++++||++..... ..++. .++.. +||.|++.+ +.
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~---------~gl~~~~~~~Ii~s~---------------~~ 79 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKS---------LGINADLPEMIISSG---------------EI 79 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHH---------CCCCccccceEEccH---------------HH
Confidence 46799999999999999999999999987765 44553 35555 899999887 11
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccc
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLR 404 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~ 404 (552)
.. ..+..+++..|+.+++|++|||.. .|+.
T Consensus 80 ~~-------------------~~l~~~~~~~~~~~~~~~~vGd~~-~d~~ 109 (242)
T TIGR01459 80 AV-------------------QMILESKKRFDIRNGIIYLLGHLE-NDII 109 (242)
T ss_pred HH-------------------HHHHhhhhhccCCCceEEEeCCcc-cchh
Confidence 00 113334555678889999999976 3454
No 101
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.98 E-value=0.0058 Score=61.85 Aligned_cols=117 Identities=15% Similarity=0.300 Sum_probs=77.5
Q ss_pred cccchhHHHHHHHH--HHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeec
Q 008819 277 LVKNGQVLQFVKML--REKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 277 i~k~p~l~~~L~~L--k~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
|..+|++.++++.+ ++.|..+.++|+|..-|++.+++ +.+.++.|+-|++.. ..|.++
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~---------~~gl~~~f~~I~TNp---a~~~~~-------- 129 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILE---------HHGLRDCFSEIFTNP---ACFDAD-------- 129 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHH---------hCCCccccceEEeCC---ceecCC--------
Confidence 55689999999999 45799999999999999999998 467889999998874 444321
Q ss_pred CcCccccccccc----cCCCeeeccCcHHHHHHHh---CCCCCcEEEEcccccccccccccCC-cEEEEE
Q 008819 355 EKDTLAFTKVDA----FIPNKIYYHGCLKSFLQIT---KWNGPEVIYFGDHLFSDLRGPSKAG-WRTAAI 416 (552)
Q Consensus 355 ~~gk~~~~~v~~----l~~g~vY~~Gn~~~l~~~l---g~~g~eVLY~GDhi~gDI~~ak~~G-wrT~~V 416 (552)
|.+...+... .=++..-.+.-++++++.. |..-++|+||||-- +|+..+++.+ -+.+..
T Consensus 130 --G~l~v~pyh~h~C~~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~-nD~Cp~~~L~~~D~v~~ 196 (234)
T PF06888_consen 130 --GRLRVRPYHSHGCSLCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGR-NDFCPALRLRPRDVVFP 196 (234)
T ss_pred --ceEEEeCccCCCCCcCCCccchHHHHHHHHHHHhhcCCCcceEEEECCCC-CCcCcccccCCCCEEec
Confidence 2221111110 0011111111144555543 55668999999999 9999887754 344443
No 102
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=96.98 E-value=0.00016 Score=72.32 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=35.4
Q ss_pred HHHHHHhCCCCCcE-EEEcccccccccccccCCcEEEEEe
Q 008819 379 KSFLQITKWNGPEV-IYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 379 ~~l~~~lg~~g~eV-LY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
..+++.++.+++++ +||||++..||..|+++||+|++|.
T Consensus 195 ~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~ 234 (236)
T TIGR01460 195 RAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVL 234 (236)
T ss_pred HHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEe
Confidence 44889999988887 9999999999999999999999984
No 103
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.86 E-value=0.0033 Score=61.95 Aligned_cols=109 Identities=21% Similarity=0.108 Sum_probs=70.1
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCcc--EEEEcCCCCCCCCCCCcceeeec
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFD--VVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD--~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
+...|++.++|+.+|+.| +++++||+...++..+++.+ | ...+|. +.+.+. +.++
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l-------g--i~~~~an~l~~~~~---g~~t---------- 123 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL-------G--FPTLLCHKLEIDDS---DRVV---------- 123 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc-------C--CchhhceeeEEecC---CeeE----------
Confidence 456899999999999986 89999999999999999875 3 334554 222220 1111
Q ss_pred CcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccchhH
Q 008819 355 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESE 423 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~E 423 (552)
|.. + .+..+ =...++.+...+.+|++|||+. +|+..++.+|...+..-.+...+
T Consensus 124 --G~~----~-------~~~~~-K~~~l~~l~~~~~~~v~vGDs~-nDl~ml~~Ag~~ia~~ak~~~~~ 177 (203)
T TIGR02137 124 --GYQ----L-------RQKDP-KRQSVIAFKSLYYRVIAAGDSY-NDTTMLSEAHAGILFHAPENVIR 177 (203)
T ss_pred --Cee----e-------cCcch-HHHHHHHHHhhCCCEEEEeCCH-HHHHHHHhCCCCEEecCCHHHHH
Confidence 100 0 00001 1112332333455899999999 88988888888877765555444
No 104
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.85 E-value=0.008 Score=62.70 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=54.9
Q ss_pred hchhhHHHHHhCccccc-ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCC
Q 008819 261 RRGLVHRGILSDPNRYL-VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANK 339 (552)
Q Consensus 261 ~~G~lk~~v~~np~kYi-~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~K 339 (552)
.+|+|-. .++-+ .++|++.++|++|+++|.+++|+||++.+.+...|+. .++.+|||.|+++...
T Consensus 133 LDgTLi~-----~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~---------lGLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 133 LDSTLIT-----DEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRK---------VKLDRYFDIIISGGHK 198 (301)
T ss_pred cCCCCcC-----CCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH---------cCCCcccCEEEECCcc
Confidence 4676543 24444 4579999999999999999999999999999999985 3777899999998755
Q ss_pred CCC
Q 008819 340 PDF 342 (552)
Q Consensus 340 P~F 342 (552)
..-
T Consensus 199 ~~~ 201 (301)
T TIGR01684 199 AEE 201 (301)
T ss_pred ccC
Confidence 433
No 105
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=96.70 E-value=0.0019 Score=72.59 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=62.8
Q ss_pred cchhHHHHHHHHHHcC-CeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 279 KNGQVLQFVKMLREKG-KKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~G-kklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
..|++.++|++|++.| ++++++||.+...+..+++.+ ++.++|+.+ .| + +
T Consensus 385 ~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l---------gi~~~f~~~-------------~p------~-~ 435 (556)
T TIGR01525 385 LRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL---------GIDEVHAEL-------------LP------E-D 435 (556)
T ss_pred chHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh---------CCCeeeccC-------------CH------H-H
Confidence 4689999999999999 999999999999999999975 444454422 11 0 1
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCC
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAG 410 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~G 410 (552)
| .++++.++..+++|+||||.+ .|+.+++++|
T Consensus 436 K--------------------~~~v~~l~~~~~~v~~vGDg~-nD~~al~~A~ 467 (556)
T TIGR01525 436 K--------------------LAIVKELQEEGGVVAMVGDGI-NDAPALAAAD 467 (556)
T ss_pred H--------------------HHHHHHHHHcCCEEEEEECCh-hHHHHHhhCC
Confidence 1 124444555788999999999 8899999888
No 106
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=96.63 E-value=0.0075 Score=57.18 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=65.2
Q ss_pred CcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCc-cEEEEcCCCCCCCCCCCcce
Q 008819 272 DPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF-DVVIAQANKPDFYTSDHPFR 350 (552)
Q Consensus 272 np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyF-D~VIv~A~KP~FF~~~~pFr 350 (552)
+...|+.+.|++.++|++|++. .++++.||++..|++.+++.+ +.. ..+| +.|++..
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l-------dp~-~~~F~~ri~~rd------------- 109 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI-------DPD-GKYFGDRIISRD------------- 109 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh-------CcC-CCeeccEEEEec-------------
Confidence 5678899999999999999855 999999999999999999986 222 2478 7676654
Q ss_pred eeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccc
Q 008819 351 CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFS 401 (552)
Q Consensus 351 ~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~g 401 (552)
++. +...+.+-.++|...+.|+.|.|+...
T Consensus 110 --~~~-------------------~~~~KdL~~i~~~d~~~vvivDd~~~~ 139 (156)
T TIGR02250 110 --ESG-------------------SPHTKSLLRLFPADESMVVIIDDREDV 139 (156)
T ss_pred --cCC-------------------CCccccHHHHcCCCcccEEEEeCCHHH
Confidence 111 112333445667788899999999844
No 107
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.60 E-value=0.007 Score=59.04 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=78.7
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCC-----------h-HhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCC
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSP-----------Y-YFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSD 346 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~-----------~-~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~ 346 (552)
-.|++.+.|..|++.|.+++++||-. + .+.+.++.-+- ..|. -||.|..+...|.=.
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~----~~gv----~id~i~~Cph~p~~~--- 100 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILA----SQGV----KIDGILYCPHHPEDN--- 100 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHH----HcCC----ccceEEECCCCCCCC---
Confidence 35789999999999999999999932 2 22333444332 1122 578888888777432
Q ss_pred CcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 347 HPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 347 ~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
++.-|| .+ |=+.++++..+.+.++..+|||.+ +||..|.++|.+++.+..+.
T Consensus 101 -------c~cRKP---------~~-----gm~~~~~~~~~iD~~~s~~VGD~~-~Dlq~a~n~gi~~~~~~~~~ 152 (181)
T COG0241 101 -------CDCRKP---------KP-----GMLLSALKEYNIDLSRSYVVGDRL-TDLQAAENAGIKGVLVLTGI 152 (181)
T ss_pred -------CcccCC---------Ch-----HHHHHHHHHhCCCccceEEecCcH-HHHHHHHHCCCCceEEEcCc
Confidence 122233 22 557779999999999999999999 99999999999988776544
No 108
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=96.46 E-value=0.0066 Score=60.37 Aligned_cols=136 Identities=26% Similarity=0.312 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhh-----------------------ccCCCC----CCCccCCcc
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML-----------------------EDSTGY----TDSWRELFD 331 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~-----------------------~~~~~~----g~~W~dyFD 331 (552)
.-|+..+.|++||.++.|+=.+||..-+--..+...|. ...+-+ .++-+++||
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~ 103 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFD 103 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCC
Confidence 56899999999998889999999976443322222221 111111 345556666
Q ss_pred ---------EEEEcCCCCCCCCCC---CcceeeecCcCcccc---------cccccc--CC-----CeeeccCc------
Q 008819 332 ---------VVIAQANKPDFYTSD---HPFRCYDTEKDTLAF---------TKVDAF--IP-----NKIYYHGC------ 377 (552)
Q Consensus 332 ---------~VIv~A~KP~FF~~~---~pFr~vd~~~gk~~~---------~~v~~l--~~-----g~vY~~Gn------ 377 (552)
+||..| |.-|+.+ +.||.+-. ..|+.. .++..+ -+ +--|+-|+
T Consensus 104 gidTs~pn~VVigla--pe~F~y~~ln~AFrvL~e-~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvG 180 (262)
T KOG3040|consen 104 GIDTSDPNCVVIGLA--PEGFSYQRLNRAFRVLLE-MKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVG 180 (262)
T ss_pred CccCCCCCeEEEecC--cccccHHHHHHHHHHHHc-CCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEec
Confidence 455566 8888753 46765322 111111 011111 01 11122221
Q ss_pred ------HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEe
Q 008819 378 ------LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 417 (552)
Q Consensus 378 ------~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vi 417 (552)
++++++-+|+.++++++|||.+.+|+-.|.+.|||.++|-
T Consensus 181 KP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVk 226 (262)
T KOG3040|consen 181 KPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVK 226 (262)
T ss_pred CCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEee
Confidence 5678899999999999999999999999999999999994
No 109
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=96.43 E-value=0.0026 Score=71.27 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=63.7
Q ss_pred cchhHHHHHHHHHHcCC-eEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 279 KNGQVLQFVKMLREKGK-KLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~Gk-klfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
..|++.+.|++|++.|+ ++.++||.+...+..+++.+ +..++|..+ .| + +
T Consensus 363 l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l---------gi~~~f~~~-------------~p------~-~ 413 (536)
T TIGR01512 363 PRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL---------GIDEVHAEL-------------LP------E-D 413 (536)
T ss_pred chHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc---------CChhhhhcc-------------Cc------H-H
Confidence 45899999999999999 99999999999999999975 333444321 11 0 0
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 411 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gw 411 (552)
| ..+++.++.++++|+||||.+ .|+.+++++|.
T Consensus 414 K--------------------~~~i~~l~~~~~~v~~vGDg~-nD~~al~~A~v 446 (536)
T TIGR01512 414 K--------------------LEIVKELREKYGPVAMVGDGI-NDAPALAAADV 446 (536)
T ss_pred H--------------------HHHHHHHHhcCCEEEEEeCCH-HHHHHHHhCCE
Confidence 1 225556666789999999999 88999998884
No 110
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=96.21 E-value=0.013 Score=57.15 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=79.1
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
+-+|...+.|++-++.|..+++-|+....-.+....|. ..-+..+||+ +|| |++.|
T Consensus 103 hlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs------~agdL~~lfs---------Gyf---------DttiG 158 (229)
T COG4229 103 HLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHS------DAGDLNSLFS---------GYF---------DTTIG 158 (229)
T ss_pred ccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhccc------ccccHHhhhc---------cee---------ecccc
Confidence 34678899999999999999999988887777544432 1346666665 233 55444
Q ss_pred ccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 358 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
+-+ .. +|...+++..|+.+.+||+.-|++ ..+.+|+..|++|++++.|-
T Consensus 159 ~Kr--------E~-----~SY~kIa~~iGl~p~eilFLSDn~-~EL~AA~~vGl~t~l~~R~g 207 (229)
T COG4229 159 KKR--------ES-----QSYAKIAGDIGLPPAEILFLSDNP-EELKAAAGVGLATGLAVRPG 207 (229)
T ss_pred ccc--------cc-----hhHHHHHHhcCCCchheEEecCCH-HHHHHHHhcchheeeeecCC
Confidence 321 12 567779999999999999999999 44888899999999998765
No 111
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.16 E-value=0.0028 Score=66.44 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=28.4
Q ss_pred CCcEEEEcccccccccccccCCcEEEEEecc
Q 008819 389 GPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 419 (552)
Q Consensus 389 g~eVLY~GDhi~gDI~~ak~~GwrT~~VipE 419 (552)
.++|++|||++.+||..|+++||.|++|...
T Consensus 263 ~~~~~mIGD~~~tDI~ga~~~G~~silV~tG 293 (321)
T TIGR01456 263 FHALYMVGDNPASDIIGAQNYGWFSCLVKTG 293 (321)
T ss_pred hheEEEEcCChhhhhhhHHhCCceEEEeccc
Confidence 4699999999999999999999999999653
No 112
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.11 E-value=0.026 Score=54.43 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=62.5
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEe-CCChHhHHHhHhhhhcc-CCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeec
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLT-NSPYYFVDGGMRFMLED-STGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDT 354 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiT-NS~~~y~~~vM~yl~~~-~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~ 354 (552)
|.-+|+++..|+.|+++|.+++++| ++..+.+..+|+-+-=. ....+..+.++||.+
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~--------------------- 102 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYL--------------------- 102 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEE---------------------
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchh---------------------
Confidence 4456889999999999999999999 56678899888854100 001122233444332
Q ss_pred CcCccccccccccCCCeeecc---CcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccchhH
Q 008819 355 EKDTLAFTKVDAFIPNKIYYH---GCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESE 423 (552)
Q Consensus 355 ~~gk~~~~~v~~l~~g~vY~~---Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~E 423 (552)
+||.+ ..+..+.+.+|++.+++|+|.|.-.. +...++.|..++.|-..+..+
T Consensus 103 ----------------eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N-~~~v~~lGV~~v~v~~Glt~~ 157 (169)
T PF12689_consen 103 ----------------EIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRN-IEVVSKLGVTCVLVPDGLTWD 157 (169)
T ss_dssp ----------------EESSS-HHHHHHHHHHHH---GGGEEEEES-HHH-HHHHHTTT-EEEE-SSS--HH
T ss_pred ----------------heecCchHHHHHHHHHhcCCChhHEEEecCchhc-ceeeEecCcEEEEeCCCCCHH
Confidence 23332 12677888999999999999999977 666667999999986655443
No 113
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.08 E-value=0.012 Score=61.48 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=53.7
Q ss_pred hchhhHHHHHhCccccc-ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCC
Q 008819 261 RRGLVHRGILSDPNRYL-VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANK 339 (552)
Q Consensus 261 ~~G~lk~~v~~np~kYi-~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~K 339 (552)
.+|+|-.. ++-| .++|++.++|++|+++|.+++|+||++.+.+...++. .++.++||+|+++...
T Consensus 135 ~D~TL~~~-----~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~---------lgL~~yFDvII~~g~i 200 (303)
T PHA03398 135 LDSTLITD-----EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKE---------TKLEGYFDIIICGGRK 200 (303)
T ss_pred cCCCccCC-----CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHH---------cCCCccccEEEECCCc
Confidence 46665432 3434 4579999999999999999999999999999999985 3677999999998754
Q ss_pred CC
Q 008819 340 PD 341 (552)
Q Consensus 340 P~ 341 (552)
.+
T Consensus 201 ~~ 202 (303)
T PHA03398 201 AG 202 (303)
T ss_pred cc
Confidence 43
No 114
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0047 Score=64.22 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=71.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccE----EEEcCCCCCCCCCCCcceeeecC
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDV----VIAQANKPDFYTSDHPFRCYDTE 355 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~----VIv~A~KP~FF~~~~pFr~vd~~ 355 (552)
++++...+..|++-|. +||+||.+.-.- +. +|..|-.-..+ ..+..|+|.++
T Consensus 167 y~KL~kA~~yLqnP~c-lflatn~D~~~p------~~-----~~~~ipG~G~~v~av~~~t~R~P~v~------------ 222 (306)
T KOG2882|consen 167 YPKLMKALNYLQNPGC-LFLATNRDATTP------PT-----PGVEIPGAGSFVAAVKFATGRQPIVL------------ 222 (306)
T ss_pred HHHHHHHHHHhCCCCc-EEEeccCccccC------CC-----CCeeccCCccHHHHHHHHhcCCCeec------------
Confidence 3577778888887765 999999876332 00 12222222221 12233444332
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccchhHHHHhh
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRIQN 428 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~Ei~~~~ 428 (552)
||| ...+ ++-+.+..+..++++++|||.+-+||.-+++.|+.|.+|......|-.+.+
T Consensus 223 -GKP---------~~~m-----~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~ 280 (306)
T KOG2882|consen 223 -GKP---------STFM-----FEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILE 280 (306)
T ss_pred -CCC---------CHHH-----HHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHh
Confidence 333 1111 344777889999999999999999999999999999999887666544443
No 115
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.94 E-value=0.016 Score=57.64 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=69.8
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCc
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 356 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~ 356 (552)
+.-.|+..+++..+|+.|.+++++|.|+..+++.+...+ ++...+--++.... ++|+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l---------g~d~~~an~l~~~d--G~ltG----------- 133 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL---------GIDYVVANELEIDD--GKLTG----------- 133 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh---------CCchheeeEEEEeC--CEEec-----------
Confidence 556789999999999999999999999999999999975 33333333333221 12221
Q ss_pred CccccccccccCCCeeeccC---cHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 008819 357 DTLAFTKVDAFIPNKIYYHG---CLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 411 (552)
Q Consensus 357 gk~~~~~v~~l~~g~vY~~G---n~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gw 411 (552)
.. + ...++.++ .+.++++.+|.+.+++..+||+. +|+---+.+|-
T Consensus 134 -~v----~----g~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~-nDlpml~~ag~ 181 (212)
T COG0560 134 -RV----V----GPICDGEGKAKALRELAAELGIPLEETVAYGDSA-NDLPMLEAAGL 181 (212)
T ss_pred -ee----e----eeecCcchHHHHHHHHHHHcCCCHHHeEEEcCch-hhHHHHHhCCC
Confidence 11 0 01111112 26678889999999999999999 88844344443
No 116
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=95.65 E-value=0.024 Score=64.11 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=60.7
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCc
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDT 358 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk 358 (552)
..|++.++|++||+.|+++.++||.+...++.+++.+ |-+ +| ...+| + +|
T Consensus 406 l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l-------gi~---~~-----~~~~p--------------~-~K 455 (562)
T TIGR01511 406 LRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL-------GIN---VR-----AEVLP--------------D-DK 455 (562)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc-------CCc---EE-----ccCCh--------------H-HH
Confidence 4578999999999999999999999999999999975 332 11 11111 0 11
Q ss_pred cccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 008819 359 LAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 411 (552)
Q Consensus 359 ~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gw 411 (552)
.++++.++.++++|+||||.+ .|+..++++|.
T Consensus 456 --------------------~~~v~~l~~~~~~v~~VGDg~-nD~~al~~A~v 487 (562)
T TIGR01511 456 --------------------AALIKELQEKGRVVAMVGDGI-NDAPALAQADV 487 (562)
T ss_pred --------------------HHHHHHHHHcCCEEEEEeCCC-ccHHHHhhCCE
Confidence 123444445789999999999 88988888874
No 117
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=95.31 E-value=0.06 Score=53.23 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=60.4
Q ss_pred ccchhHHHHHH-HHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeec-C
Q 008819 278 VKNGQVLQFVK-MLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDT-E 355 (552)
Q Consensus 278 ~k~p~l~~~L~-~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~-~ 355 (552)
...|++.+.|+ .+++.|.+++|+|||+..+++.+.+.. +|..-.+ +|+.. + .+ +
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~---------~~~~~~~-~i~t~-----------l---e~~~ 149 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS---------NFIHRLN-LIASQ-----------I---ERGN 149 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc---------cccccCc-EEEEE-----------e---EEeC
Confidence 45899999995 788899999999999999999998753 3433333 34221 1 11 1
Q ss_pred cCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccc
Q 008819 356 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLR 404 (552)
Q Consensus 356 ~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~ 404 (552)
+|+. ..+..|..|=+..+.+.+|.....+-..|||+ +|+-
T Consensus 150 gg~~--------~g~~c~g~~Kv~rl~~~~~~~~~~~~aYsDS~-~D~p 189 (210)
T TIGR01545 150 GGWV--------LPLRCLGHEKVAQLEQKIGSPLKLYSGYSDSK-QDNP 189 (210)
T ss_pred CceE--------cCccCCChHHHHHHHHHhCCChhheEEecCCc-ccHH
Confidence 1221 11223333334555566665556677899999 9983
No 118
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.18 E-value=0.046 Score=56.39 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccC-CccEEEEcC
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRE-LFDVVIAQA 337 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~d-yFD~VIv~A 337 (552)
+-|++.++|+.|++.|.+++++||.+....+..+..|- ..++.. .+|.|+...
T Consensus 119 ~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lk------k~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 119 PVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLK------RFGFPQADEEHLLLKK 172 (266)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHH------HcCcCCCCcceEEeCC
Confidence 56899999999999999999999998555554443332 123322 246676654
No 119
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=95.03 E-value=0.047 Score=51.39 Aligned_cols=35 Identities=14% Similarity=0.385 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
|++.++|+.++++|.+++|+|.|+..++..+++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~ 126 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL 126 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 77889999999999999999999999999999854
No 120
>PLN02645 phosphoglycolate phosphatase
Probab=94.78 E-value=0.059 Score=56.26 Aligned_cols=53 Identities=19% Similarity=0.095 Sum_probs=37.1
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcC
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA 337 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A 337 (552)
.-|+..++|++|+++|++++++||.+..-...+++.+- ..+..-.+|.|++..
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~------~lGi~~~~~~I~ts~ 97 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFE------SLGLNVTEEEIFSSS 97 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHH------HCCCCCChhhEeehH
Confidence 45889999999999999999999988555555554432 122233456666665
No 121
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=93.90 E-value=0.047 Score=51.85 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=28.7
Q ss_pred HhCcccccccchhHHHHHHHHHHcCCeEEEEeCC
Q 008819 270 LSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNS 303 (552)
Q Consensus 270 ~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS 303 (552)
.++|+.+..-+|++++.|.+|.+.|++++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3468888888889999999999999999999996
No 122
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.49 Score=46.60 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=52.0
Q ss_pred HHHHHhhhchhhHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhh
Q 008819 254 RAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 316 (552)
Q Consensus 254 ~Av~~vH~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~ 316 (552)
.-++++|.+ + +++.+...+-+.-+|+.+++.+..++++..+.++|..--.|+.++++-+.
T Consensus 52 ~mf~~i~~s--~-~Eile~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 52 RMFGSIHSS--L-EEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred HHHHhcCCC--H-HHHHHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 334556665 3 88899899999999999999999999999999999999999999888765
No 123
>PRK10671 copA copper exporting ATPase; Provisional
Probab=93.08 E-value=0.094 Score=61.97 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 359 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~ 359 (552)
.|+..+.|++|++.|++++++|+.+...+..+.+.+ | +.++| ... .| + +|
T Consensus 652 r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l-------g--i~~~~----~~~---------~p------~-~K- 701 (834)
T PRK10671 652 RSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA-------G--IDEVI----AGV---------LP------D-GK- 701 (834)
T ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-------C--CCEEE----eCC---------CH------H-HH-
Confidence 367889999999999999999999999999999864 3 32222 111 11 1 11
Q ss_pred ccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 008819 360 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 411 (552)
Q Consensus 360 ~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gw 411 (552)
.++++.++.++.+|+||||.+ .|+...+++|.
T Consensus 702 -------------------~~~i~~l~~~~~~v~~vGDg~-nD~~al~~Agv 733 (834)
T PRK10671 702 -------------------AEAIKRLQSQGRQVAMVGDGI-NDAPALAQADV 733 (834)
T ss_pred -------------------HHHHHHHhhcCCEEEEEeCCH-HHHHHHHhCCe
Confidence 125566677889999999999 88988888887
No 124
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.80 E-value=0.21 Score=43.83 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=28.0
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.+-|+..++|++|+++||+++++||++..-....++.|
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 35689999999999999999999999854444444443
No 125
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=91.40 E-value=1.5 Score=45.76 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=56.7
Q ss_pred HHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCC
Q 008819 269 ILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSD 346 (552)
Q Consensus 269 v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~ 346 (552)
+..+-+.--.++|.+..-|.+||+.|.-+.|=|-...+.+...|+.+ +..++||+||+...+-+-...+
T Consensus 133 LItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~---------~L~~~Fd~ii~~G~~~~~~~~~ 201 (297)
T PF05152_consen 133 LITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL---------KLEGYFDIIICGGNKAGEYNSR 201 (297)
T ss_pred ccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh---------CCccccEEEEeCCccCCcCCcc
Confidence 34444444568899999999999999999999999999999999965 5558999999999887765543
No 126
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=91.32 E-value=0.71 Score=44.22 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHHhC----CCCCcEEEEcccccccccccccCCcEEEEEeccchhH
Q 008819 379 KSFLQITK----WNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESE 423 (552)
Q Consensus 379 ~~l~~~lg----~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~E 423 (552)
+.+....| .+++|+++|||-+++||.-|...|--++.+-|....|
T Consensus 125 E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~ 173 (190)
T KOG2961|consen 125 EEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAE 173 (190)
T ss_pred HHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEeccccccc
Confidence 33444555 6789999999999999999999988888876655444
No 127
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=90.23 E-value=0.53 Score=56.21 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=71.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 359 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~ 359 (552)
.|++++.++.|+++|+++.++|+-+..-+..+.+.+ +..+.++.++++. .+...+.
T Consensus 530 r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~---------Gi~~~~~~~v~g~----------~l~~~~~----- 585 (884)
T TIGR01522 530 RPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL---------GMPSKTSQSVSGE----------KLDAMDD----- 585 (884)
T ss_pred hhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc---------CCCCCCCceeEhH----------HhHhCCH-----
Confidence 479999999999999999999999999999998864 3444566666554 1111110
Q ss_pred cccccc-ccCCCeeeccCcHH---HHHHHhCCCCCcEEEEcccccccccccccCC
Q 008819 360 AFTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSKAG 410 (552)
Q Consensus 360 ~~~~v~-~l~~g~vY~~Gn~~---~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~G 410 (552)
.... -+.+..||..-+-+ .+.+.++-.|..|+++||.+ .|+-+.++++
T Consensus 586 --~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGv-ND~pAl~~Ad 637 (884)
T TIGR01522 586 --QQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGV-NDAPALKLAD 637 (884)
T ss_pred --HHHHHHhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCc-ccHHHHHhCC
Confidence 0001 12244566554432 35555666789999999999 8898877776
No 128
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=89.30 E-value=0.91 Score=41.87 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=58.1
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHH------------HhHhhhhccCCCCCCCccCCccEEEEcCCCC-----
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVD------------GGMRFMLEDSTGYTDSWRELFDVVIAQANKP----- 340 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~------------~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP----- 340 (552)
.+.+++.+.|++|++.|.+++++|.-+..... .+.++|- .|.=-||-++.+. |
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~--------k~~ipYd~l~~~k--p~~~~~ 93 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLN--------QHNVPYDEIYVGK--PWCGHD 93 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHH--------HcCCCCceEEeCC--CcCCCC
Confidence 45688999999999999999999999988776 6677763 2333467888876 6
Q ss_pred CCCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCC
Q 008819 341 DFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNG 389 (552)
Q Consensus 341 ~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g 389 (552)
+|+.+++.. ++..+..-+.+++.++++...
T Consensus 94 ~~~~dD~~i-------------------r~~~~~~~~~~~~~~~~~~~~ 123 (126)
T TIGR01689 94 GFYVDDRAI-------------------RPSEFSSLTYDEINTLTKIDK 123 (126)
T ss_pred Cceecchhh-------------------CHHHHHhcCHHHHHHHHhhcc
Confidence 455444321 344555566777777776544
No 129
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=88.66 E-value=2.4 Score=43.01 Aligned_cols=136 Identities=14% Similarity=0.225 Sum_probs=81.0
Q ss_pred HHhhhchhhHHHHHhCcccccccchhHHHHHHHHHHcCC-eEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEE
Q 008819 257 QHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGK-KLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIA 335 (552)
Q Consensus 257 ~~vH~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lk~~Gk-klfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv 335 (552)
...|..|.--++|++ .-+-|--.|++.++++.+++.|- -+.++|.++.-|++.++.. .+.-++|+-|.|
T Consensus 64 k~Lheqgv~~~~ik~-~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea---------~~~~d~F~~IfT 133 (256)
T KOG3120|consen 64 KELHEQGVRIAEIKQ-VLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEA---------AGIHDLFSEIFT 133 (256)
T ss_pred HHHHHcCCCHHHHHH-HHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHH---------ccHHHHHHHHhc
Confidence 445544443333333 12223346999999999999996 8999999999999999995 477789998877
Q ss_pred cCCCCCCCCCCCcceeeecCcCccccccccc-----cCCCeeeccCcHHHHHH---HhCCCCCcEEEEcccccccccccc
Q 008819 336 QANKPDFYTSDHPFRCYDTEKDTLAFTKVDA-----FIPNKIYYHGCLKSFLQ---ITKWNGPEVIYFGDHLFSDLRGPS 407 (552)
Q Consensus 336 ~A~KP~FF~~~~pFr~vd~~~gk~~~~~v~~-----l~~g~vY~~Gn~~~l~~---~lg~~g~eVLY~GDhi~gDI~~ak 407 (552)
.. +-|.+ +|.+...+... +-|...-.|--+.++.. .-|++-++++||||.- +|+....
T Consensus 134 NP---a~~da----------~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~-nD~CP~l 199 (256)
T KOG3120|consen 134 NP---ACVDA----------SGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGA-NDFCPVL 199 (256)
T ss_pred CC---cccCC----------CCcEEeecCCCCCccCcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCC-CCcCcch
Confidence 64 44332 23332221110 11111111111233332 2356667999999998 8897664
Q ss_pred c-CCcEEEEE
Q 008819 408 K-AGWRTAAI 416 (552)
Q Consensus 408 ~-~GwrT~~V 416 (552)
+ .+-+.+..
T Consensus 200 ~Lr~~D~amp 209 (256)
T KOG3120|consen 200 RLRACDVAMP 209 (256)
T ss_pred hcccCceecc
Confidence 4 34444443
No 130
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=87.91 E-value=1 Score=41.73 Aligned_cols=56 Identities=11% Similarity=0.168 Sum_probs=42.5
Q ss_pred cccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcC
Q 008819 273 PNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA 337 (552)
Q Consensus 273 p~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A 337 (552)
...++.+-|++.++|+.+.+. ..+++.|.+...|++.+++.+. +. ..+|+.++...
T Consensus 31 ~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld-------p~-~~~~~~~~~r~ 86 (159)
T PF03031_consen 31 GGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD-------PN-GKLFSRRLYRD 86 (159)
T ss_dssp EEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT-------TT-TSSEEEEEEGG
T ss_pred cceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh-------hh-ccccccccccc
Confidence 356777889999999999655 9999999999999999999874 22 45777777554
No 131
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=1.7 Score=46.26 Aligned_cols=59 Identities=20% Similarity=0.389 Sum_probs=48.1
Q ss_pred cchhHHHHHHHHHHcC-CeEEEEeCCChHhHHHhHhhhhccCCCCC----CCccCCccEEEEcC
Q 008819 279 KNGQVLQFVKMLREKG-KKLFLLTNSPYYFVDGGMRFMLEDSTGYT----DSWRELFDVVIAQA 337 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~G-kklfLiTNS~~~y~~~vM~yl~~~~~~~g----~~W~dyFD~VIv~A 337 (552)
+-||+..|++.|-+.| ..+|-+|||||.+-...-+|+.....|+| .+|-..||.+++.+
T Consensus 197 ~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sg 260 (373)
T COG4850 197 VIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESG 260 (373)
T ss_pred CCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccch
Confidence 3589999999999888 88999999999999998888876666766 46666677776655
No 132
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=87.45 E-value=0.59 Score=54.76 Aligned_cols=36 Identities=17% Similarity=0.042 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.|++.+.+++|++.|+++.++|+.+...+..+.+.+
T Consensus 570 r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~l 605 (741)
T PRK11033 570 RADARQAISELKALGIKGVMLTGDNPRAAAAIAGEL 605 (741)
T ss_pred chhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence 478999999999999999999999999999999975
No 133
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=87.44 E-value=1.4 Score=45.14 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.8
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCCh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPY 305 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~ 305 (552)
+.|+..++|++|++.|+++.++||++.
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~ 45 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNST 45 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCC
Confidence 457899999999999999999999653
No 134
>COG4996 Predicted phosphatase [General function prediction only]
Probab=86.83 E-value=1.7 Score=40.73 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=44.9
Q ss_pred HHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcC
Q 008819 269 ILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA 337 (552)
Q Consensus 269 v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A 337 (552)
|..+-..-++-.|.++++|...|..|.-+-++|-+..+-+-.++.- .+...||+.+|...
T Consensus 32 i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLra---------l~~~~yFhy~VieP 91 (164)
T COG4996 32 IEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRA---------LDLLQYFHYIVIEP 91 (164)
T ss_pred eecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHH---------hchhhhEEEEEecC
Confidence 3344555667778899999999999987878877776666666653 46778999987654
No 135
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=86.53 E-value=3.5 Score=42.18 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=75.6
Q ss_pred cccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceee
Q 008819 273 PNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCY 352 (552)
Q Consensus 273 p~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~v 352 (552)
..++..-++.++.+++.|++.|++++-+|.-+..+....+++|-.- |-+..+- .-++..++.. | ..
T Consensus 76 ~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~----gi~fs~~------~~~~~~~~~~--~--~~ 141 (252)
T PF11019_consen 76 LRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSL----GIDFSSS------SFPEDGIISF--P--VF 141 (252)
T ss_pred hcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHC----CCCcccc------ccccCcceec--c--cc
Confidence 3344445689999999999999999999999999999988887521 2111111 0111111100 0 00
Q ss_pred ecCcCccccccccccCCCeeeccC-----cHHHHHHHhCCCCCcEEEEcccccccccc---c-ccCCcEEEEEe
Q 008819 353 DTEKDTLAFTKVDAFIPNKIYYHG-----CLKSFLQITKWNGPEVIYFGDHLFSDLRG---P-SKAGWRTAAII 417 (552)
Q Consensus 353 d~~~gk~~~~~v~~l~~g~vY~~G-----n~~~l~~~lg~~g~eVLY~GDhi~gDI~~---a-k~~GwrT~~Vi 417 (552)
+.. + ...-.+..|-+|.+| .+..++..+|+.++.|+||.|.... |.+ + ++.|..=.++.
T Consensus 142 ~~~---~--~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~n-l~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 142 DSA---L--SRAPSFYDGILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKEN-LKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred cCC---C--CCCceeecCeEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHH-HHHHHHHHhhCCCcEEEEE
Confidence 000 0 000112345555544 3778999999999999999998854 532 2 44666555553
No 136
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=85.98 E-value=1 Score=42.57 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=23.8
Q ss_pred cEEEEeccccccccCcchHHHHHH-HHHHHHHHhcCCCcc
Q 008819 109 QVYGFDYDYTLAHYSSNLQSLIYD-LAKEHMVNEFRYPEV 147 (552)
Q Consensus 109 ~~iGFDmDyTLa~Y~~~~~~L~y~-~~~~~LV~~~gYP~~ 147 (552)
++|.|||||||+--.+.+.. +++ .+.+.+..++|.|..
T Consensus 1 ~~viFDlDGTL~ds~~~~~~-~~~~~~~~~~~~~~g~~~~ 39 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFL-QIDRNITEFVAARLKLSEE 39 (184)
T ss_pred CeEEEeCCCCCCCCcccHHH-HHHHHHHHHHHHHcCcCHH
Confidence 57999999999955443333 333 334455556787643
No 137
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=84.85 E-value=0.88 Score=45.15 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=26.2
Q ss_pred cccCCccEEEEeccccccccCcchHHHHHHHHHHHHHHhcCCCcc
Q 008819 103 LRLDNIQVYGFDYDYTLAHYSSNLQSLIYDLAKEHMVNEFRYPEV 147 (552)
Q Consensus 103 l~L~~i~~iGFDmDyTLa~Y~~~~~~L~y~~~~~~LV~~~gYP~~ 147 (552)
+....+++|-|||||||+-.... .....+...+.+.+.+|.|.+
T Consensus 5 ~~~~~~k~vIFDlDGTL~d~~~~-~~~~~~~~~~~~~~~~G~~~~ 48 (224)
T PRK14988 5 IAWQDVDTVLLDMDGTLLDLAFD-NYFWQKLVPETLGAQRGISPQ 48 (224)
T ss_pred CCcccCCEEEEcCCCCccchhhh-chHHHhhHHHHHHHHhCcCHH
Confidence 34567899999999999994211 111112233445455677743
No 138
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=84.37 E-value=4.6 Score=40.99 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=36.8
Q ss_pred hhHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhh
Q 008819 264 LVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 316 (552)
Q Consensus 264 ~lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~ 316 (552)
.+.++|.+-.. -+-|++.++++.+++.|.++|++||-+...-+.....|.
T Consensus 109 ~~~~wv~~~~a---paip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~ 158 (229)
T TIGR01675 109 AFWLWLGKGAA---PALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLI 158 (229)
T ss_pred HHHHHHHcCCC---CCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH
Confidence 35555555433 245789999999999999999999999877555555553
No 139
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=83.72 E-value=2.8 Score=42.36 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcC
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA 337 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A 337 (552)
-|+..++|++|+++|++++++||+...-...+...+- ..++..-.|-||+.+
T Consensus 19 i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~------~~g~~~~~~~iit~~ 70 (249)
T TIGR01457 19 IPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLA------SFDIPATLETVFTAS 70 (249)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH------HcCCCCChhhEeeHH
Confidence 4688999999999999999999944222233333332 223334557777776
No 140
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=82.11 E-value=3.4 Score=45.79 Aligned_cols=108 Identities=21% Similarity=0.325 Sum_probs=68.6
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 278 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 278 ~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
.|+.+..++.+...+.||++.|+|.- .+...+++-++... |. .|. +.|++.- +
T Consensus 99 ypn~~~~eL~e~ai~n~krVIlISDM--Ylps~Il~~~L~s~---g~----------------d~~--nipiY~S----~ 151 (635)
T COG5610 99 YPNKKNIELVEEAIKNEKRVILISDM--YLPSSILRTFLNSF---GP----------------DFN--NIPIYMS----S 151 (635)
T ss_pred eccccchHHHHHHHhCCCeEEEEecc--cCcHHHHHHHHHhc---CC----------------Ccc--Cceeeec----c
Confidence 34557788899999999999999764 33334444333211 22 221 1232210 0
Q ss_pred ccccccccccCCCeeeccCc-HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccchh
Q 008819 358 TLAFTKVDAFIPNKIYYHGC-LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELES 422 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn-~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~ 422 (552)
.- .+.+. .|+ ++.+++.-++++.+.+-+||+..+|++.||+.|.-|.--+.++.+
T Consensus 152 e~------rl~Kn----Sg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~~s~l~~ 207 (635)
T COG5610 152 EF------RLKKN----SGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTLFYISQLLP 207 (635)
T ss_pred ee------ehhcc----cchHHHHHHhhcCCChhheEEecCchhhhhcCccccchhHHHHHHHhhh
Confidence 00 01111 134 345788999999999999999999999999999888755555543
No 141
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.53 E-value=2.2 Score=43.36 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=30.5
Q ss_pred HHHHHHHhCC---CCCcEEEEcccccccccccccCCcEEEEE
Q 008819 378 LKSFLQITKW---NGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 378 ~~~l~~~lg~---~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
++.+++.+|+ +.++|+.|||+. .|+.--+.+|+ .+++
T Consensus 192 l~~l~~~lgi~~~~~~~viafGDs~-NDi~Ml~~ag~-gvAM 231 (271)
T PRK03669 192 ANWLIATYQQLSGTRPTTLGLGDGP-NDAPLLDVMDY-AVVV 231 (271)
T ss_pred HHHHHHHHHhhcCCCceEEEEcCCH-HHHHHHHhCCE-EEEe
Confidence 7889999999 999999999999 89976666775 4444
No 142
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=79.40 E-value=0.87 Score=45.83 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 316 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~ 316 (552)
+-|+..++++.+++.|.+||+|||-+...-+..++-|-
T Consensus 116 aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~ 153 (229)
T PF03767_consen 116 AIPGALELYNYARSRGVKVFFITGRPESQREATEKNLK 153 (229)
T ss_dssp EETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHH
Confidence 45789999999999999999999987775555555543
No 143
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=77.76 E-value=1.8 Score=41.74 Aligned_cols=78 Identities=24% Similarity=0.332 Sum_probs=53.8
Q ss_pred HHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccccccccc
Q 008819 287 VKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDA 366 (552)
Q Consensus 287 L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~~~~v~~ 366 (552)
++.|.+.|+++++||.-...-+..=++-| |-. .+..+- ..|+
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~L-------GI~------~~~qG~------------------~dK~------- 85 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDL-------GIK------HLYQGI------------------SDKL------- 85 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHc-------CCc------eeeech------------------HhHH-------
Confidence 45667899999999999999888777654 322 011111 0011
Q ss_pred cCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcE
Q 008819 367 FIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 412 (552)
Q Consensus 367 l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gwr 412 (552)
-.++++++.+++.+++|.|+||.+ .|+-.-++.|..
T Consensus 86 ---------~a~~~L~~~~~l~~e~~ayiGDD~-~Dlpvm~~vGls 121 (170)
T COG1778 86 ---------AAFEELLKKLNLDPEEVAYVGDDL-VDLPVMEKVGLS 121 (170)
T ss_pred ---------HHHHHHHHHhCCCHHHhhhhcCcc-ccHHHHHHcCCc
Confidence 125669999999999999999998 777555566654
No 144
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=77.58 E-value=16 Score=36.57 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 277 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 277 i~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
..-.|+++++.++|++.|++++|+|..=..++..+-+-|
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L 125 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL 125 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh
Confidence 345789999999999999999999999999999988876
No 145
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=77.22 E-value=2.7 Score=42.69 Aligned_cols=37 Identities=19% Similarity=0.059 Sum_probs=29.5
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
..|+..++|++|+++|++++++||++..-...+..++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999999999998766544444443
No 146
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=77.16 E-value=5 Score=48.33 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccC--CccEEEEcCCCCCCCCCCCcceeeecCcC
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRE--LFDVVIAQANKPDFYTSDHPFRCYDTEKD 357 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~d--yFD~VIv~A~KP~FF~~~~pFr~vd~~~g 357 (552)
.|++++.+++||++|+++.++|+-+..-+..+.+.+ |....+ ..+.++++. . |..++.+.
T Consensus 539 r~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~-------gi~~~~~~v~~~~~~g~---~-------l~~~~~~~- 600 (917)
T TIGR01116 539 RPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRI-------GIFSPDEDVTFKSFTGR---E-------FDEMGPAK- 600 (917)
T ss_pred chhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHc-------CCCCCCccccceeeeHH---H-------HhhCCHHH-
Confidence 468999999999999999999999988888888765 322111 112233322 1 11101000
Q ss_pred ccccccccccCCCeeeccCcH---HHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 008819 358 TLAFTKVDAFIPNKIYYHGCL---KSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 411 (552)
Q Consensus 358 k~~~~~v~~l~~g~vY~~Gn~---~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gw 411 (552)
.........||+.-+- .++.+.++-.|+.|+++||.. .|+-+.++++.
T Consensus 601 -----~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~-ND~~alk~AdV 651 (917)
T TIGR01116 601 -----QRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGV-NDAPALKKADI 651 (917)
T ss_pred -----HHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCc-chHHHHHhCCe
Confidence 0001112345544332 245666777889999999999 88977676654
No 147
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=76.95 E-value=2 Score=41.11 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=11.7
Q ss_pred ccEEEEecccccc
Q 008819 108 IQVYGFDYDYTLA 120 (552)
Q Consensus 108 i~~iGFDmDyTLa 120 (552)
++.+-|||||||+
T Consensus 1 ~~~v~FD~DGTL~ 13 (205)
T PRK13582 1 MEIVCLDLEGVLV 13 (205)
T ss_pred CeEEEEeCCCCCh
Confidence 4689999999999
No 148
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=75.95 E-value=2.8 Score=42.14 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 412 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gwr 412 (552)
+..+++.+|+..++|+.|||+. .|+.--+.+|.-
T Consensus 194 l~~l~~~lgi~~~~v~afGD~~-ND~~Ml~~ag~g 227 (264)
T COG0561 194 LQRLAKLLGIKLEEVIAFGDST-NDIEMLEVAGLG 227 (264)
T ss_pred HHHHHHHhCCCHHHeEEeCCcc-ccHHHHHhcCee
Confidence 7788999999999999999999 888544445543
No 149
>PLN02954 phosphoserine phosphatase
Probab=75.80 E-value=2.3 Score=41.33 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.5
Q ss_pred CCccEEEEeccccccc
Q 008819 106 DNIQVYGFDYDYTLAH 121 (552)
Q Consensus 106 ~~i~~iGFDmDyTLa~ 121 (552)
..+++|-||||+||+.
T Consensus 10 ~~~k~viFDfDGTL~~ 25 (224)
T PLN02954 10 RSADAVCFDVDSTVCV 25 (224)
T ss_pred ccCCEEEEeCCCcccc
Confidence 4589999999999997
No 150
>PRK09449 dUMP phosphatase; Provisional
Probab=75.69 E-value=2.6 Score=40.97 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=14.3
Q ss_pred CccEEEEecccccccc
Q 008819 107 NIQVYGFDYDYTLAHY 122 (552)
Q Consensus 107 ~i~~iGFDmDyTLa~Y 122 (552)
.|++|-|||||||+.+
T Consensus 2 ~~k~iiFDlDGTLid~ 17 (224)
T PRK09449 2 KYDWILFDADETLFHF 17 (224)
T ss_pred CccEEEEcCCCchhcc
Confidence 4899999999999974
No 151
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=72.23 E-value=18 Score=33.87 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=65.3
Q ss_pred hhchhhHHHHHhCccccc---ccchhHHHHHHHHHHcCCeEEEEeCCC-hHhHHHhHhhhhccCCCCCCCccCCccEEEE
Q 008819 260 HRRGLVHRGILSDPNRYL---VKNGQVLQFVKMLREKGKKLFLLTNSP-YYFVDGGMRFMLEDSTGYTDSWRELFDVVIA 335 (552)
Q Consensus 260 H~~G~lk~~v~~np~kYi---~k~p~l~~~L~~Lk~~GkklfLiTNS~-~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv 335 (552)
|.++.+|+--.+ |.+|= .-++.++..|..||+.|.+++.++|+. .++++.+++- |-+-++
T Consensus 24 hl~~pfkP~k~~-~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~---------------fkvk~~ 87 (144)
T KOG4549|consen 24 HLDYPFKPFKCE-CGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLET---------------FKVKQT 87 (144)
T ss_pred cccccccccccC-cccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHH---------------hccCcc
Confidence 445555543333 33332 225789999999999999999999996 5667766663 334444
Q ss_pred cCCCCCCCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccc
Q 008819 336 QANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFS 401 (552)
Q Consensus 336 ~A~KP~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~g 401 (552)
+.-||.- +..+|..+-. ..|+ |.++++.+..+..-++..+|.|.-.+
T Consensus 88 Gvlkps~--e~ft~~~~g~-gskl----------------ghfke~~n~s~~~~k~~~~fdDesrn 134 (144)
T KOG4549|consen 88 GVLKPSL--EEFTFEAVGD-GSKL----------------GHFKEFTNNSNSIEKNKQVFDDESRN 134 (144)
T ss_pred cccchhh--hcCceeeecC-cccc----------------hhHHHHhhccCcchhceeeecccccC
Confidence 4445532 1123322211 1112 66777888777777888888886644
No 152
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=70.79 E-value=10 Score=37.89 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=28.7
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
..|+..++|..++++|++++++||+.-.-...+.++|
T Consensus 15 ~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l 51 (236)
T TIGR01460 15 PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKL 51 (236)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999999999998744444444444
No 153
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=70.53 E-value=21 Score=37.28 Aligned_cols=37 Identities=14% Similarity=-0.050 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 316 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~ 316 (552)
-|+...+++.+++.|.++|++||-+-..-+..++.|-
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~ 183 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLK 183 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH
Confidence 4688899999999999999999999877776776664
No 154
>PTZ00174 phosphomannomutase; Provisional
Probab=69.24 E-value=5.5 Score=40.03 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=25.8
Q ss_pred CccEEEEeccccccccCcchHHHHHHHHHHHHHHhcCCC
Q 008819 107 NIQVYGFDYDYTLAHYSSNLQSLIYDLAKEHMVNEFRYP 145 (552)
Q Consensus 107 ~i~~iGFDmDyTLa~Y~~~~~~L~y~~~~~~LV~~~gYP 145 (552)
++++|.|||||||+.-...+..-. ..++++|.+ .|..
T Consensus 4 ~~klia~DlDGTLL~~~~~is~~~-~~ai~~l~~-~Gi~ 40 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNPITQEM-KDTLAKLKS-KGFK 40 (247)
T ss_pred CCeEEEEECcCCCcCCCCCCCHHH-HHHHHHHHH-CCCE
Confidence 489999999999997754454433 344566766 5654
No 155
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=68.86 E-value=8.3 Score=40.64 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHcC-CeEEEEeCCChH
Q 008819 280 NGQVLQFVKMLREKG-KKLFLLTNSPYY 306 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~G-kklfLiTNS~~~ 306 (552)
+|.|.++++.+|+.| +++||+||+.-.
T Consensus 94 y~~L~elI~~~k~~g~~~tflvTNgslp 121 (296)
T COG0731 94 YPNLGELIEEIKKRGKKTTFLVTNGSLP 121 (296)
T ss_pred ccCHHHHHHHHHhcCCceEEEEeCCChH
Confidence 578999999999999 799999999983
No 156
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=67.54 E-value=8.5 Score=36.38 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.|++.+++++++++|.+++++|+.++...+....++
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l 64 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL 64 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH
Confidence 589999999999999999999999999987666665
No 157
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=67.13 E-value=8.6 Score=44.89 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
|++++.+++||+.|+++.++|.-+..-+..+.+.+
T Consensus 449 p~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l 483 (675)
T TIGR01497 449 GGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA 483 (675)
T ss_pred hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence 68999999999999999999999999999999875
No 158
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=66.21 E-value=3.4 Score=40.08 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.3
Q ss_pred cCCccEEEEeccccccccC
Q 008819 105 LDNIQVYGFDYDYTLAHYS 123 (552)
Q Consensus 105 L~~i~~iGFDmDyTLa~Y~ 123 (552)
+..++++-|||||||+...
T Consensus 11 ~~~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE 29 (219)
T ss_pred hccCCEEEEeCcccCCCch
Confidence 5668899999999999863
No 159
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=65.13 E-value=4.6 Score=38.56 Aligned_cols=17 Identities=35% Similarity=0.229 Sum_probs=15.0
Q ss_pred ccEEEEeccccccccCc
Q 008819 108 IQVYGFDYDYTLAHYSS 124 (552)
Q Consensus 108 i~~iGFDmDyTLa~Y~~ 124 (552)
|++|-||||+||+...+
T Consensus 1 ik~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHS 17 (198)
T ss_pred CcEEEEeCCCcCccHHH
Confidence 57899999999998865
No 160
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=64.23 E-value=4.3 Score=39.58 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRT 413 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT 413 (552)
+..+++.+|+++++|++|||+. .|+...+.+|+-.
T Consensus 162 l~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~ag~~v 196 (230)
T PRK01158 162 LKKLAELMGIDPEEVAAIGDSE-NDLEMFEVAGFGV 196 (230)
T ss_pred HHHHHHHhCCCHHHEEEECCch-hhHHHHHhcCceE
Confidence 7789999999999999999999 7998888788753
No 161
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=63.06 E-value=8.4 Score=40.68 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=33.7
Q ss_pred cccccCCccEEEEeccccccccCcc--hH-HHHHHHHHHHHHHhcCCCccccC
Q 008819 101 KNLRLDNIQVYGFDYDYTLAHYSSN--LQ-SLIYDLAKEHMVNEFRYPEVCIS 150 (552)
Q Consensus 101 r~l~L~~i~~iGFDmDyTLa~Y~~~--~~-~L~y~~~~~~LV~~~gYP~~ll~ 150 (552)
.++-.+-.++|.||||+||..-... .. +-+.+ +++.|.+ .|++-.+..
T Consensus 119 ~~~~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~E-aL~~Lke-kGikLaIaT 169 (301)
T TIGR01684 119 PSKVFEPPHVVVFDLDSTLITDEEPVRIRDPRIYD-SLTELKK-RGCILVLWS 169 (301)
T ss_pred cccccccceEEEEecCCCCcCCCCccccCCHHHHH-HHHHHHH-CCCEEEEEE
Confidence 4466788899999999999988643 22 43444 4566766 788866543
No 162
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=62.74 E-value=0.12 Score=55.99 Aligned_cols=196 Identities=8% Similarity=-0.161 Sum_probs=125.1
Q ss_pred CCeeEEccccccCCccEEEEeccccccccC-cchHHHHHHHHHHHHHHhcCCCccccCCCCCCCCccccceeecCCCeEE
Q 008819 94 PEGIYVNKNLRLDNIQVYGFDYDYTLAHYS-SNLQSLIYDLAKEHMVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLL 172 (552)
Q Consensus 94 ~~~VFvNr~l~L~~i~~iGFDmDyTLa~Y~-~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~Dp~F~iRGL~~D~~~GnlL 172 (552)
+-.++++++|... +.+.+++++|++. |. +..+.+.|..--..|.. .++|-..++..+++-++.+|+.++...++..
T Consensus 40 ~Y~~~~~esLay~-~~~~~l~~~Gyp~-~ll~~~~d~~f~~rGL~ld~-~~GN~lKld~~~~vl~a~hg~rfls~~~~~e 116 (424)
T KOG2469|consen 40 RYNLPEMESLAYD-LAQFLLKDKGYPN-ELLSTSFDWNFPCRGLVLDK-ERGNLLKLDRFGYVLRAAHGTRFLSNEEISE 116 (424)
T ss_pred hhcccchHHHHHH-HHHHHHHhcCChh-hhhccccCccceeeeeEEec-cCCceeeeeccCceeeeccccccccccchhh
Confidence 5678999999999 9999999999998 53 44455566554455555 6888776788899999999999999999999
Q ss_pred EecCCCceeecccccCCccCCHHHHHHHhCCccccCCccCCccccccccchhHHHHHHHHHHHhhhccCCCC-hhhHHHH
Q 008819 173 KLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKLEFD-ASYIYED 251 (552)
Q Consensus 173 KlD~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~l~dlFslpe~~L~a~lvd~~~~~~~~~~-~~~l~~D 251 (552)
+.++.+ + .-+. |.-.+...+ .+..+.--+-++.|+++....+ ....+|| ++.-++ ...+..+
T Consensus 117 iyg~~~-~-----~~~~---~~~~~l~t~----F~~~ea~~~aq~vd~~d~~~~~-~~~~~dy---k~~~~~v~~~~~~~ 179 (424)
T KOG2469|consen 117 IYGRKL-V-----RLSD---SRYYLLNTL----FSMPEADLFAQAVDFLDNGPEY-GPVDMDY---KPGWKDVRAAGNAV 179 (424)
T ss_pred hccccc-c-----cccC---chhhhhhhh----hhchhHHHHHhhcchhhcCCcc-Cccchhh---cchHHHHHHHHhHH
Confidence 998776 2 2232 222222111 1111111122344444432221 1111221 121222 3468888
Q ss_pred HHHHHHHhhhchhhHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhH
Q 008819 252 VNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGM 312 (552)
Q Consensus 252 V~~Av~~vH~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM 312 (552)
..++.-..|..|...+.|..+ ++++. .++...-..+..--+ +.++.|+++.-++...+
T Consensus 180 h~~~~lk~~~~~~pek~V~~d-~~~v~-~l~~~r~sGKk~fl~-Tns~~~ytd~~mt~~~~ 237 (424)
T KOG2469|consen 180 HLYGLLKKKMMGKPERYVVYD-GTIVP-LLSMLRDSGKKTFLH-TNSDWDYTDIFMAFHYG 237 (424)
T ss_pred HHHHHHHHHHhcCCCceeeec-Ccccc-chHHHHhhccceEEe-eccccchhhHHHHHHhC
Confidence 899999999999999999885 44443 443333333333333 57899999999999888
No 163
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=62.60 E-value=4.9 Score=38.98 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
+..+++.+|++.++|++|||+. .|+...+.+|+- +++
T Consensus 154 i~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~ag~~-vam 190 (225)
T TIGR01482 154 VKKLKEKLGIKPGETLVCGDSE-NDIDLFEVPGFG-VAV 190 (225)
T ss_pred HHHHHHHhCCCHHHEEEECCCH-hhHHHHHhcCce-EEc
Confidence 7779999999999999999997 899888888874 444
No 164
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=62.43 E-value=6.6 Score=38.23 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRT 413 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT 413 (552)
+..+++.+|+++++|++|||+. .|+.--+.+|+-.
T Consensus 184 l~~l~~~lgi~~~~vi~~GD~~-NDi~ml~~ag~~v 218 (221)
T TIGR02463 184 ANWLKATYNQPDVKTLGLGDGP-NDLPLLEVADYAV 218 (221)
T ss_pred HHHHHHHhCCCCCcEEEECCCH-HHHHHHHhCCceE
Confidence 6789999999999999999999 7897766677543
No 165
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=60.65 E-value=9.5 Score=38.16 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccchhHHHH
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRI 426 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~Ei~~ 426 (552)
+..+++.+|++.++|++|||+. .|+...+.++..+++| ..-..|++.
T Consensus 172 l~~l~~~~~i~~~~~i~~GD~~-ND~~ml~~~~~~~va~-~na~~~~k~ 218 (249)
T TIGR01485 172 LQYLLQKLAMEPSQTLVCGDSG-NDIELFEIGSVRGVIV-SNAQEELLQ 218 (249)
T ss_pred HHHHHHHcCCCccCEEEEECCh-hHHHHHHccCCcEEEE-CCCHHHHHH
Confidence 6778899999999999999999 7898777767778877 445555443
No 166
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=60.54 E-value=6.3 Score=35.87 Aligned_cols=15 Identities=40% Similarity=0.250 Sum_probs=12.8
Q ss_pred EEEEeccccccccCc
Q 008819 110 VYGFDYDYTLAHYSS 124 (552)
Q Consensus 110 ~iGFDmDyTLa~Y~~ 124 (552)
+|-||+||||+-..+
T Consensus 1 ~iifD~DGTL~d~~~ 15 (154)
T TIGR01549 1 AILFDIDGTLVDSSF 15 (154)
T ss_pred CeEecCCCcccccHH
Confidence 378999999999765
No 167
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=59.55 E-value=7.6 Score=36.69 Aligned_cols=17 Identities=41% Similarity=0.426 Sum_probs=15.1
Q ss_pred ccEEEEeccccccccCc
Q 008819 108 IQVYGFDYDYTLAHYSS 124 (552)
Q Consensus 108 i~~iGFDmDyTLa~Y~~ 124 (552)
|+.+-||+||||+.-..
T Consensus 4 ~k~viFD~DGTLid~~~ 20 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMS 20 (201)
T ss_pred ceEEEEeCCCCCcCCcc
Confidence 78999999999998764
No 168
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=59.14 E-value=9.6 Score=40.29 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=32.3
Q ss_pred ccccCCccEEEEeccccccccCcch---HHHHHHHHHHHHHHhcCCCcccc
Q 008819 102 NLRLDNIQVYGFDYDYTLAHYSSNL---QSLIYDLAKEHMVNEFRYPEVCI 149 (552)
Q Consensus 102 ~l~L~~i~~iGFDmDyTLa~Y~~~~---~~L~y~~~~~~LV~~~gYP~~ll 149 (552)
++-.+-.++|+||||+||..=.... .+-+++. ++.|.+ .|++=.+.
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~~v~irdp~V~Et-L~eLke-kGikLaIv 170 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEEPVRIRDPFVYDS-LDELKE-RGCVLVLW 170 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCCccccCChhHHHH-HHHHHH-CCCEEEEE
Confidence 4455667899999999999886443 2446664 566665 78886654
No 169
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=57.70 E-value=7.4 Score=37.40 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=11.6
Q ss_pred EEEeccccccccCc
Q 008819 111 YGFDYDYTLAHYSS 124 (552)
Q Consensus 111 iGFDmDyTLa~Y~~ 124 (552)
+.|||||||+--.+
T Consensus 1 iiFDlDGTL~Ds~~ 14 (205)
T TIGR01454 1 VVFDLDGVLVDSFA 14 (205)
T ss_pred CeecCcCccccCHH
Confidence 47999999998655
No 170
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=57.48 E-value=5.7 Score=38.32 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=14.4
Q ss_pred ccEEEEeccccccccC
Q 008819 108 IQVYGFDYDYTLAHYS 123 (552)
Q Consensus 108 i~~iGFDmDyTLa~Y~ 123 (552)
|++|-|||||||+.+.
T Consensus 2 ik~viFDldGtL~d~~ 17 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSP 17 (211)
T ss_pred ceEEEEecCCceecCH
Confidence 6899999999999974
No 171
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=56.18 E-value=8.7 Score=39.02 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCC-CcEEEEcccccccccccccCCcEEE
Q 008819 378 LKSFLQITKWNG-PEVIYFGDHLFSDLRGPSKAGWRTA 414 (552)
Q Consensus 378 ~~~l~~~lg~~g-~eVLY~GDhi~gDI~~ak~~GwrT~ 414 (552)
+..+++.+|+++ ++|++|||+. .|+...+.+|+..+
T Consensus 195 l~~l~~~~~i~~~~~v~~~GDs~-NDi~m~~~ag~~va 231 (273)
T PRK00192 195 VRWLKELYRRQDGVETIALGDSP-NDLPMLEAADIAVV 231 (273)
T ss_pred HHHHHHHHhccCCceEEEEcCCh-hhHHHHHhCCeeEE
Confidence 778899999999 9999999999 78988888886554
No 172
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=55.96 E-value=6.3 Score=37.38 Aligned_cols=16 Identities=38% Similarity=0.341 Sum_probs=11.8
Q ss_pred cEEEEeccccccccCc
Q 008819 109 QVYGFDYDYTLAHYSS 124 (552)
Q Consensus 109 ~~iGFDmDyTLa~Y~~ 124 (552)
++.+||+|+||+.-+.
T Consensus 1 Kia~fD~DgTLi~~~s 16 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS 16 (159)
T ss_dssp SEEEE-SCTTTEE-ST
T ss_pred CEEEEeCCCCccCCCC
Confidence 5789999999999863
No 173
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=55.28 E-value=14 Score=39.09 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=28.3
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMR 313 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~ 313 (552)
+-|+.+++|+.|++.||+++++||....--..-|+
T Consensus 39 ~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~k 73 (306)
T KOG2882|consen 39 PIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMK 73 (306)
T ss_pred CCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHH
Confidence 45799999999999999999999987554444444
No 174
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=55.10 E-value=20 Score=36.73 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=71.5
Q ss_pred hhchhhHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCC
Q 008819 260 HRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANK 339 (552)
Q Consensus 260 H~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~K 339 (552)
+.+|.||..+ .+.+.+.+++-+..|.++|+-+.-...-...+-.| +. ..+.++|++
T Consensus 115 y~sg~lk~~v----------~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~----s~--~gdl~~y~~-------- 170 (254)
T KOG2630|consen 115 YESGELKAHV----------YADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGY----SD--AGDLRKYIS-------- 170 (254)
T ss_pred cccccccccc----------cchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcc----cC--cchHHHHhh--------
Confidence 4566666533 45688999999999999997765555444433333 21 223444432
Q ss_pred CCCCCCCCcceeeecCcCccccccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEec
Q 008819 340 PDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 418 (552)
Q Consensus 340 P~FF~~~~pFr~vd~~~gk~~~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~Vip 418 (552)
++| |+.-|.- + .. .+...+.+.+|.++.++|+.-|.. ....+|+.+|..|.+++.
T Consensus 171 -gyf---------Dt~iG~K----~----e~-----~sy~~I~~~Ig~s~~eiLfLTd~~-~Ea~aa~~aGl~a~l~~r 225 (254)
T KOG2630|consen 171 -GYF---------DTTIGLK----V----ES-----QSYKKIGHLIGKSPREILFLTDVP-REAAAARKAGLQAGLVSR 225 (254)
T ss_pred -hhh---------hccccce----e----hh-----HHHHHHHHHhCCChhheEEeccCh-HHHHHHHhcccceeeeec
Confidence 222 3322211 0 11 456679999999999999999988 547778889999998874
No 175
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=54.21 E-value=19 Score=34.94 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
+...++|++|++.|++++++||.+...+..+++.+
T Consensus 19 ~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 34789999999999999999999999999888765
No 176
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=54.05 E-value=8.6 Score=35.77 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=12.8
Q ss_pred EEEEeccccccccCc
Q 008819 110 VYGFDYDYTLAHYSS 124 (552)
Q Consensus 110 ~iGFDmDyTLa~Y~~ 124 (552)
++-||+||||+-..+
T Consensus 1 ~viFD~DGTL~D~~~ 15 (175)
T TIGR01493 1 AMVFDVYGTLVDVHG 15 (175)
T ss_pred CeEEecCCcCcccHH
Confidence 478999999998765
No 177
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=53.69 E-value=7.5 Score=35.85 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=13.1
Q ss_pred cEEEEeccccccccC
Q 008819 109 QVYGFDYDYTLAHYS 123 (552)
Q Consensus 109 ~~iGFDmDyTLa~Y~ 123 (552)
++|.||+||||+...
T Consensus 2 K~i~~DiDGTL~~~~ 16 (126)
T TIGR01689 2 KRLVMDLDNTITLTE 16 (126)
T ss_pred CEEEEeCCCCcccCC
Confidence 689999999998764
No 178
>PLN02423 phosphomannomutase
Probab=53.10 E-value=12 Score=37.78 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=22.0
Q ss_pred CCCcEEEEccc---ccccccccccCCcEEEEE
Q 008819 388 NGPEVIYFGDH---LFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 388 ~g~eVLY~GDh---i~gDI~~ak~~GwrT~~V 416 (552)
++++|+.|||. -+.|+.--+.-|--++.|
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~ 230 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFESERTIGHTV 230 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHhCCCcceEEe
Confidence 89999999997 568885544456666666
No 179
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=52.50 E-value=8.1 Score=37.57 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTA 414 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~ 414 (552)
+..+++.+|++.+++++|||+. .|+...+.+|+-.+
T Consensus 152 i~~l~~~~~i~~~~~i~iGDs~-ND~~ml~~ag~~va 187 (215)
T TIGR01487 152 VEKLKELLGIKPEEVAAIGDSE-NDIDLFRVVGFKVA 187 (215)
T ss_pred HHHHHHHhCCCHHHEEEECCCH-HHHHHHHhCCCeEE
Confidence 6778899999999999999999 78988888886533
No 180
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=52.44 E-value=6.2 Score=36.85 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=13.0
Q ss_pred ccEEEEeccccccc
Q 008819 108 IQVYGFDYDYTLAH 121 (552)
Q Consensus 108 i~~iGFDmDyTLa~ 121 (552)
|+++-||+|+||..
T Consensus 1 ~~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 1 IRLLILDVDGVLTD 14 (154)
T ss_pred CeEEEEeCceeEEc
Confidence 67899999999998
No 181
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=52.44 E-value=12 Score=35.43 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=16.4
Q ss_pred ccEEEEeccccccccCcch
Q 008819 108 IQVYGFDYDYTLAHYSSNL 126 (552)
Q Consensus 108 i~~iGFDmDyTLa~Y~~~~ 126 (552)
|++|-||+||||..-+..+
T Consensus 1 i~~i~fDktGTLt~~~~~v 19 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV 19 (215)
T ss_dssp ESEEEEECCTTTBESHHEE
T ss_pred CeEEEEecCCCcccCeEEE
Confidence 6899999999998887655
No 182
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=50.62 E-value=8.2 Score=37.39 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=11.2
Q ss_pred ccEEEEecccccccc
Q 008819 108 IQVYGFDYDYTLAHY 122 (552)
Q Consensus 108 i~~iGFDmDyTLa~Y 122 (552)
-++|.||+||||--.
T Consensus 3 PklvvFDLD~TlW~~ 17 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPP 17 (169)
T ss_dssp -SEEEE-STTTSSSS
T ss_pred CcEEEEcCcCCCCch
Confidence 478999999999755
No 183
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=50.48 E-value=8.8 Score=36.94 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=0.0
Q ss_pred cE-EEEeccccccccCcchHHHH
Q 008819 109 QV-YGFDYDYTLAHYSSNLQSLI 130 (552)
Q Consensus 109 ~~-iGFDmDyTLa~Y~~~~~~L~ 130 (552)
++ ||+|||+|||.+...+-...
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~ 24 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWF 24 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHH
T ss_pred CcEEEEECCCCCcccHHHHHHHH
No 184
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=49.80 E-value=26 Score=33.50 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 314 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~y 314 (552)
..|.+.++|++|++.|.+++++|+.+...+...+..
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 457899999999999999999999999999987764
No 185
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=49.22 E-value=12 Score=33.77 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=11.9
Q ss_pred EEEeccccccccCc
Q 008819 111 YGFDYDYTLAHYSS 124 (552)
Q Consensus 111 iGFDmDyTLa~Y~~ 124 (552)
|-||+|+||+....
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 57999999998765
No 186
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=47.73 E-value=15 Score=36.84 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccC-------CcEEEEEe
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKA-------GWRTAAII 417 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~-------GwrT~~Vi 417 (552)
+..+++.++..+.+++||||.. +|+...+.+ |-.++.|.
T Consensus 172 ~~~~~~~~~~~~~~~i~iGD~~-~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 172 VKRLLWHQPGSGISPVYLGDDI-TDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred HHHHHHhcccCCCceEEEcCCC-cHHHHHHHHhcccCCCCeEEEEEe
Confidence 6678899999999999999988 888655433 55677775
No 187
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=47.17 E-value=41 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=21.4
Q ss_pred EEEEeCCChHhHHHhHhhhhccCCCCC
Q 008819 297 LFLLTNSPYYFVDGGMRFMLEDSTGYT 323 (552)
Q Consensus 297 lfLiTNS~~~y~~~vM~yl~~~~~~~g 323 (552)
+|-+|||||.....+.+++-....|.|
T Consensus 2 f~YvS~SPwnly~~l~~Fl~~~~~P~G 28 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLRRNGFPAG 28 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCC
Confidence 688999999999999998754444444
No 188
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=46.60 E-value=48 Score=33.15 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.|...+.|++|+++|.+++++|.-++..+..++..+
T Consensus 22 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 57 (270)
T PRK10513 22 SPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKEL 57 (270)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHh
Confidence 467889999999999999999999999888777643
No 189
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=46.39 E-value=11 Score=36.20 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 412 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gwr 412 (552)
+..+++.+|+++++|++|||+. .|+...+.+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~GD~~-nD~~~~~~~~~~ 201 (204)
T TIGR01484 168 LQALLKELNGKRDEILAFGDSG-NDEEMFEVAGLA 201 (204)
T ss_pred HHHHHHHhCCCHHHEEEEcCCH-HHHHHHHHcCCc
Confidence 6778899999999999999988 888776666654
No 190
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=45.71 E-value=12 Score=37.31 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 412 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~Gwr 412 (552)
++.+++.+|+++++|++|||+. .|+...+.+|+-
T Consensus 193 i~~~~~~~~~~~~~~~~~GD~~-nD~~m~~~~~~~ 226 (256)
T TIGR00099 193 LQSLAEALGISLEDVIAFGDGM-NDIEMLEAAGYG 226 (256)
T ss_pred HHHHHHHcCCCHHHEEEeCCcH-HhHHHHHhCCce
Confidence 7889999999999999999999 789877778864
No 191
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=45.49 E-value=30 Score=35.09 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
+...++|++|++.|++++++||.+...+...+..+
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l 58 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKEL 58 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence 56889999999999999999999999999888764
No 192
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=45.24 E-value=7.7 Score=35.91 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=13.6
Q ss_pred EEEEeccccccccCcc
Q 008819 110 VYGFDYDYTLAHYSSN 125 (552)
Q Consensus 110 ~iGFDmDyTLa~Y~~~ 125 (552)
++.||||+||+...+.
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4789999999999763
No 193
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=45.00 E-value=31 Score=34.55 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.+...+.|+++++.|++++|+|+.++..+..++..+
T Consensus 22 ~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l 57 (264)
T COG0561 22 SPETKEALARLREKGVKVVLATGRPLPDVLSILEEL 57 (264)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc
Confidence 467899999999999999999999999999999876
No 194
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=44.65 E-value=22 Score=35.13 Aligned_cols=47 Identities=11% Similarity=-0.018 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccchhHHHHh
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRIQ 427 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~Ei~~~ 427 (552)
+..+++.+|+++++|++|||.. .|+...+.+|. .++| ..-..|+...
T Consensus 164 l~~l~~~~g~~~~~~i~~GD~~-nD~~ml~~~~~-~iav-~na~~~~k~~ 210 (236)
T TIGR02471 164 LRYLSYRWGLPLEQILVAGDSG-NDEEMLRGLTL-GVVV-GNHDPELEGL 210 (236)
T ss_pred HHHHHHHhCCCHHHEEEEcCCc-cHHHHHcCCCc-EEEE-cCCcHHHHHh
Confidence 6778899999999999999998 78976665653 3333 4555555444
No 195
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=44.51 E-value=98 Score=30.83 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=43.6
Q ss_pred hHHHHHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhh
Q 008819 265 VHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 316 (552)
Q Consensus 265 lk~~v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~ 316 (552)
+.+.|.+-.++|-.|-.-..+++.+-...|-+++.+|+-...-++.+-+-|-
T Consensus 101 FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~La 152 (237)
T COG3700 101 FWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLA 152 (237)
T ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHH
Confidence 6778888889998888888899999999999999999998877777665543
No 196
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=44.29 E-value=46 Score=39.01 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
-|++++.+++||+.|+++.++|+=+..-+..+-+.+
T Consensus 443 R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el 478 (673)
T PRK14010 443 KDGLVERFRELREMGIETVMCTGDNELTAATIAKEA 478 (673)
T ss_pred cHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 368999999999999999999999999999999875
No 197
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=42.89 E-value=40 Score=39.79 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
|+..+.+++||+.|+++.++|.=+..-++.+-+.+
T Consensus 540 ~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~l 574 (713)
T COG2217 540 PDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKEL 574 (713)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 57899999999999999999999999999999876
No 198
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=42.25 E-value=13 Score=37.83 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=13.4
Q ss_pred EEEEeccccccccCc
Q 008819 110 VYGFDYDYTLAHYSS 124 (552)
Q Consensus 110 ~iGFDmDyTLa~Y~~ 124 (552)
+|+||+|+||+-=++
T Consensus 65 aViFDlDgTLlDSs~ 79 (237)
T TIGR01672 65 AVSFDIDDTVLFSSP 79 (237)
T ss_pred EEEEeCCCccccCcH
Confidence 899999999987666
No 199
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=40.75 E-value=25 Score=33.24 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=11.9
Q ss_pred EEEEeccccccccC
Q 008819 110 VYGFDYDYTLAHYS 123 (552)
Q Consensus 110 ~iGFDmDyTLa~Y~ 123 (552)
+|.||||+||+...
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 47799999999875
No 200
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=40.49 E-value=43 Score=33.34 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 314 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~y 314 (552)
.+...++|++|++.|.+++++|+.++..+...+..
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~ 52 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNILKE 52 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Confidence 46788999999999999999999999888777664
No 201
>PRK10444 UMP phosphatase; Provisional
Probab=39.99 E-value=27 Score=35.51 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=22.7
Q ss_pred ccEEEEeccccccccCcchHHHHHHHHHHHHHHhcCCC
Q 008819 108 IQVYGFDYDYTLAHYSSNLQSLIYDLAKEHMVNEFRYP 145 (552)
Q Consensus 108 i~~iGFDmDyTLa~Y~~~~~~L~y~~~~~~LV~~~gYP 145 (552)
|+.+-||+||||.+-...... +. .+.++|.+ .|.|
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~-a~-~~l~~L~~-~g~~ 35 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPG-AA-EFLHRILD-KGLP 35 (248)
T ss_pred CcEEEEeCCCceEeCCeeCcc-HH-HHHHHHHH-CCCe
Confidence 689999999999888642322 22 23455655 4655
No 202
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=39.51 E-value=74 Score=38.41 Aligned_cols=73 Identities=23% Similarity=0.239 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccc
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 360 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~ 360 (552)
|+.......||+.|+++.++|+-++.-+..+-+.+ | +|-|.... || + +|
T Consensus 726 ~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~V-------G------i~~V~aev-~P--------------~-~K-- 774 (951)
T KOG0207|consen 726 PDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQV-------G------IDNVYAEV-LP--------------E-QK-- 774 (951)
T ss_pred hhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhh-------C------cceEEecc-Cc--------------h-hh--
Confidence 56778888999999999999999999999988865 4 66777666 33 1 11
Q ss_pred cccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccc
Q 008819 361 FTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDL 403 (552)
Q Consensus 361 ~~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI 403 (552)
.+..+.+.-.+..|.+|||-| .|-
T Consensus 775 ------------------~~~Ik~lq~~~~~VaMVGDGI-NDa 798 (951)
T KOG0207|consen 775 ------------------AEKIKEIQKNGGPVAMVGDGI-NDA 798 (951)
T ss_pred ------------------HHHHHHHHhcCCcEEEEeCCC-Ccc
Confidence 113444544668899999999 554
No 203
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=39.50 E-value=16 Score=32.55 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=11.6
Q ss_pred cEEEEeccccccc
Q 008819 109 QVYGFDYDYTLAH 121 (552)
Q Consensus 109 ~~iGFDmDyTLa~ 121 (552)
+++-||+||||..
T Consensus 1 k~~~~D~dgtL~~ 13 (132)
T TIGR01662 1 KGVVLDLDGTLTD 13 (132)
T ss_pred CEEEEeCCCceec
Confidence 5789999999995
No 204
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=39.27 E-value=30 Score=32.94 Aligned_cols=16 Identities=38% Similarity=0.376 Sum_probs=13.8
Q ss_pred CccEEEEecccccccc
Q 008819 107 NIQVYGFDYDYTLAHY 122 (552)
Q Consensus 107 ~i~~iGFDmDyTLa~Y 122 (552)
..+++.||+||||...
T Consensus 12 ~~k~~~~D~Dgtl~~~ 27 (166)
T TIGR01664 12 QSKVAAFDLDGTLITT 27 (166)
T ss_pred cCcEEEEeCCCceEec
Confidence 5688999999999974
No 205
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=39.26 E-value=50 Score=31.59 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 314 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~y 314 (552)
-.|...+.|++|+++|.+++++|+-++..+..++..
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~ 51 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKE 51 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHH
T ss_pred eCHHHHHHHHhhcccceEEEEEccCccccccccccc
Confidence 347899999999999999999999999999888874
No 206
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=38.74 E-value=35 Score=41.02 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccc
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 360 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~ 360 (552)
|++++.+++|+++|+++.++|+-+..-+..+.+.+ |-. + +-++++. .+...+.
T Consensus 518 ~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~l-------GI~--~--~~v~~g~----------~l~~~~~------ 570 (867)
T TIGR01524 518 ESTKEAIAALFKNGINVKVLTGDNEIVTARICQEV-------GID--A--NDFLLGA----------DIEELSD------ 570 (867)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-------CCC--C--CCeeecH----------hhhhCCH------
Confidence 68999999999999999999999999998888865 321 0 1244433 1111110
Q ss_pred ccccc-ccCCCeeeccCcHH---HHHHHhCCCCCcEEEEcccccccccccccC
Q 008819 361 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSKA 409 (552)
Q Consensus 361 ~~~v~-~l~~g~vY~~Gn~~---~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~ 409 (552)
.... ..+...||..-+-+ ++.+.+.-.|..|.++||-+ .|.-+-+++
T Consensus 571 -~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGv-NDapALk~A 621 (867)
T TIGR01524 571 -EELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGI-NDAPALRKA 621 (867)
T ss_pred -HHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCc-ccHHHHHhC
Confidence 0111 12244567655433 34455556788999999998 787544444
No 207
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=38.21 E-value=50 Score=31.90 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.|...++|++|++.|.+++++|+.++..+..++..+
T Consensus 17 ~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l 52 (225)
T TIGR01482 17 NESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI 52 (225)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh
Confidence 356788999999999999999999999888777653
No 208
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=37.75 E-value=49 Score=38.83 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
|++++.+++||+.|+++.++|.=+..-+..+.+.+
T Consensus 448 ~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~el 482 (679)
T PRK01122 448 PGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA 482 (679)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 68999999999999999999999999999998865
No 209
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=37.06 E-value=52 Score=31.90 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 314 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~y 314 (552)
-.|...+.|++|++.|.+++++|+.++..+..+...
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~ 54 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVL 54 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHH
Confidence 346889999999999999999999999988876653
No 210
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=36.44 E-value=33 Score=35.06 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCCcEEEEccccccccc---ccccCCcEEEEEe
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLR---GPSKAGWRTAAII 417 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~---~ak~~GwrT~~Vi 417 (552)
+..+++.+|++.++|+||||.. +|+- .+...+..+++|-
T Consensus 179 l~~ll~~~~~~~~~v~~~GD~~-nD~~mf~~~~~~~g~~vavg 220 (266)
T PRK10187 179 IAAFMQEAPFAGRTPVFVGDDL-TDEAGFAVVNRLGGISVKVG 220 (266)
T ss_pred HHHHHHhcCCCCCeEEEEcCCc-cHHHHHHHHHhcCCeEEEEC
Confidence 7789999999999999999987 7873 2334566777773
No 211
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=36.02 E-value=57 Score=31.65 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.|...+.|.+|++.|.+++++|+-++..+..+...+
T Consensus 22 ~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l 57 (230)
T PRK01158 22 SLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLI 57 (230)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh
Confidence 467889999999999999999999999988777653
No 212
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=34.91 E-value=60 Score=32.95 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=38.5
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCC--ChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCC
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNS--PYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDF 342 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS--~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~F 342 (552)
-.+.+...|+.+|+.|+|..|+=|- |.+....++. ..|+|..-+-.|+|
T Consensus 94 ~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~---------------~vD~VllMsVnPGf 144 (220)
T COG0036 94 ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD---------------DVDLVLLMSVNPGF 144 (220)
T ss_pred cCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh---------------hCCEEEEEeECCCC
Confidence 3467899999999999998888875 5666665554 45889999988988
No 213
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=34.86 E-value=29 Score=34.76 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHHHHhCCC--CCcEEEEcccccccccccccCCcEEE
Q 008819 378 LKSFLQITKWN--GPEVIYFGDHLFSDLRGPSKAGWRTA 414 (552)
Q Consensus 378 ~~~l~~~lg~~--g~eVLY~GDhi~gDI~~ak~~GwrT~ 414 (552)
+..+++.+|++ .+++++|||+. .|+.-.+.+|+-.+
T Consensus 181 i~~l~~~~~i~~~~~~~~a~GD~~-ND~~Ml~~ag~~va 218 (256)
T TIGR01486 181 ANALKQFYNQPGGAIKVVGLGDSP-NDLPLLEVVDLAVV 218 (256)
T ss_pred HHHHHHHHhhcCCCceEEEEcCCH-hhHHHHHHCCEEEE
Confidence 67899999999 99999999999 89977777776544
No 214
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=34.16 E-value=60 Score=32.86 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.+...+.|++|+++|.+++++|+-++..+..+++.+
T Consensus 26 ~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 26 WQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 456889999999999999999999999998888765
No 215
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=34.10 E-value=22 Score=32.09 Aligned_cols=14 Identities=43% Similarity=0.346 Sum_probs=12.6
Q ss_pred cEEEEecccccccc
Q 008819 109 QVYGFDYDYTLAHY 122 (552)
Q Consensus 109 ~~iGFDmDyTLa~Y 122 (552)
+++.||+||||...
T Consensus 1 kli~~DlD~Tl~~~ 14 (128)
T TIGR01681 1 KVIVFDLDNTLWTG 14 (128)
T ss_pred CEEEEeCCCCCCCC
Confidence 57899999999988
No 216
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=34.07 E-value=20 Score=34.42 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=15.0
Q ss_pred CCccEEEEecccccccc
Q 008819 106 DNIQVYGFDYDYTLAHY 122 (552)
Q Consensus 106 ~~i~~iGFDmDyTLa~Y 122 (552)
..|++|.||+|+||..-
T Consensus 19 ~~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 19 ENIRLLICDVDGVFSDG 35 (183)
T ss_pred hCceEEEEcCCeeeecC
Confidence 46999999999999964
No 217
>PRK10976 putative hydrolase; Provisional
Probab=33.18 E-value=24 Score=35.38 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
++.+++.+|++.++|+.|||+. .||---+.+|+ .+++
T Consensus 195 l~~l~~~lgi~~~~viafGD~~-NDi~Ml~~ag~-~vAm 231 (266)
T PRK10976 195 LEAVAKKLGYSLKDCIAFGDGM-NDAEMLSMAGK-GCIM 231 (266)
T ss_pred HHHHHHHcCCCHHHeEEEcCCc-ccHHHHHHcCC-Ceee
Confidence 7889999999999999999999 89976666776 3444
No 218
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=32.72 E-value=44 Score=40.56 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccc
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 360 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~ 360 (552)
|++++.+++||++|+++.++|+-+..-+..+.+.+ |- .+-=+.++++. -|+..+.
T Consensus 582 ~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~-------GI--~~~~~~vi~G~----------~~~~l~~------ 636 (941)
T TIGR01517 582 PGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC-------GI--LTFGGLAMEGK----------EFRRLVY------ 636 (941)
T ss_pred hhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-------CC--CCCCceEeeHH----------HhhhCCH------
Confidence 68999999999999999999999999998888754 21 10001355544 1111110
Q ss_pred ccccc-ccCCCeeeccCcHH---HHHHHhCCCCCcEEEEccccccccccccc
Q 008819 361 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSK 408 (552)
Q Consensus 361 ~~~v~-~l~~g~vY~~Gn~~---~l~~~lg~~g~eVLY~GDhi~gDI~~ak~ 408 (552)
.+.. -+....||..-+-+ ++.+.+.-.|.-|+++||-+ .|.-+-++
T Consensus 637 -~el~~~i~~~~Vfar~sPe~K~~iV~~lq~~g~vVam~GDGv-NDapALk~ 686 (941)
T TIGR01517 637 -EEMDPILPKLRVLARSSPLDKQLLVLMLKDMGEVVAVTGDGT-NDAPALKL 686 (941)
T ss_pred -HHHHHHhccCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCC-chHHHHHh
Confidence 0111 12244677665533 34455555788999999999 88754443
No 219
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=32.68 E-value=46 Score=35.29 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=24.3
Q ss_pred ccEEEEeccccccccCc-chHHHHHHHHHHHHHHhcCCCcc
Q 008819 108 IQVYGFDYDYTLAHYSS-NLQSLIYDLAKEHMVNEFRYPEV 147 (552)
Q Consensus 108 i~~iGFDmDyTLa~Y~~-~~~~L~y~~~~~~LV~~~gYP~~ 147 (552)
.++|-+||||||..-+. ..+. .. .++++|.+ .|.|--
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~-a~-~aL~~Lk~-~GI~vV 38 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGA-AR-QALAALER-RSIPLV 38 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHH-HH-HHHHHHHH-CCCEEE
Confidence 36889999999998543 2333 33 34677765 677743
No 220
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=31.87 E-value=30 Score=34.63 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
++.+++.+|++.++|+.|||+. .|+---+.+|+ .+++
T Consensus 201 l~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ag~-~vAm 237 (270)
T PRK10513 201 VKSLAEHLGIKPEEVMAIGDQE-NDIAMIEYAGV-GVAM 237 (270)
T ss_pred HHHHHHHhCCCHHHEEEECCch-hhHHHHHhCCc-eEEe
Confidence 7889999999999999999999 89976667776 3444
No 221
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=31.14 E-value=48 Score=31.36 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=21.8
Q ss_pred cEEEEecccccccc---CcchHHH----HHHHHHHHHHHhcCCCcc
Q 008819 109 QVYGFDYDYTLAHY---SSNLQSL----IYDLAKEHMVNEFRYPEV 147 (552)
Q Consensus 109 ~~iGFDmDyTLa~Y---~~~~~~L----~y~~~~~~LV~~~gYP~~ 147 (552)
+++.||.||||... ....+.. .-..+++.|.+ .||+-.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~-~G~~l~ 46 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKK-MGYALV 46 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHH-CCCEEE
Confidence 68899999999932 1122222 12334555654 577744
No 222
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.02 E-value=43 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=20.8
Q ss_pred EEEeccccccccCcchHHHHHHHHHHHHHHhcCCCc
Q 008819 111 YGFDYDYTLAHYSSNLQSLIYDLAKEHMVNEFRYPE 146 (552)
Q Consensus 111 iGFDmDyTLa~Y~~~~~~L~y~~~~~~LV~~~gYP~ 146 (552)
|-||+||||.+-+..+.. + ..++++|.+ .|.|-
T Consensus 1 ~l~D~dGvl~~g~~~ipg-a-~e~l~~L~~-~g~~~ 33 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPG-A-VEALDALRE-RGKPV 33 (101)
T ss_dssp EEEESTTTSEETTEE-TT-H-HHHHHHHHH-TTSEE
T ss_pred CEEeCccEeEeCCCcCcC-H-HHHHHHHHH-cCCCE
Confidence 469999999998753333 1 233566665 56663
No 223
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=30.72 E-value=26 Score=34.26 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=13.5
Q ss_pred EEEEeccccccccCc
Q 008819 110 VYGFDYDYTLAHYSS 124 (552)
Q Consensus 110 ~iGFDmDyTLa~Y~~ 124 (552)
+|.||+||||.....
T Consensus 5 ~vifDfDgTi~~~d~ 19 (219)
T PRK09552 5 QIFCDFDGTITNNDN 19 (219)
T ss_pred EEEEcCCCCCCcchh
Confidence 789999999999864
No 224
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=30.59 E-value=1e+02 Score=30.80 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 282 QVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 282 ~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
...++|++|+++|.+++++|+-+...+...+..+
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~ 53 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKEL 53 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 4789999999999999999999999888777653
No 225
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=30.31 E-value=32 Score=35.77 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=18.2
Q ss_pred cCCccEEEEeccccccccCc
Q 008819 105 LDNIQVYGFDYDYTLAHYSS 124 (552)
Q Consensus 105 L~~i~~iGFDmDyTLa~Y~~ 124 (552)
++++++|-||+||||.+-+.
T Consensus 5 ~~~y~~~l~DlDGvl~~G~~ 24 (269)
T COG0647 5 MDKYDGFLFDLDGVLYRGNE 24 (269)
T ss_pred hhhcCEEEEcCcCceEeCCc
Confidence 57899999999999999986
No 226
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=29.31 E-value=28 Score=34.31 Aligned_cols=25 Identities=12% Similarity=-0.128 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCChHh
Q 008819 283 VLQFVKMLREKGKKLFLLTNSPYYF 307 (552)
Q Consensus 283 l~~~L~~Lk~~GkklfLiTNS~~~y 307 (552)
=...++.+++.|.++..+..|..|.
T Consensus 133 K~~~l~~l~~~~~~~v~vGDs~nDl 157 (203)
T TIGR02137 133 KRQSVIAFKSLYYRVIAAGDSYNDT 157 (203)
T ss_pred HHHHHHHHHhhCCCEEEEeCCHHHH
Confidence 3445666777787888888888874
No 227
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.91 E-value=50 Score=29.07 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHH
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVD 309 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~ 309 (552)
.+.+.++++.+|++|.++..+|+++..-..
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 367999999999999999999998765444
No 228
>PRK10976 putative hydrolase; Provisional
Probab=28.90 E-value=82 Score=31.48 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=30.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 314 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~y 314 (552)
.|...+.|++++++|.+++++|.-++..+..++..
T Consensus 21 s~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~ 55 (266)
T PRK10976 21 SPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDN 55 (266)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHh
Confidence 46789999999999999999999999988776664
No 229
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=28.83 E-value=35 Score=31.46 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=11.9
Q ss_pred EEEeccccccccCc
Q 008819 111 YGFDYDYTLAHYSS 124 (552)
Q Consensus 111 iGFDmDyTLa~Y~~ 124 (552)
+-|||||||..-..
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 67999999998754
No 230
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=28.78 E-value=84 Score=31.29 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 314 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~y 314 (552)
.|...+.|++++++|.+++++|+-++..+...+..
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~ 56 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFYQA 56 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHh
Confidence 56778999999999999999999999888776654
No 231
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=28.34 E-value=89 Score=31.07 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 314 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~y 314 (552)
|+..++|++|+++|.+++++|+.+..-+...++-
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~ 51 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREE 51 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence 4689999999999999999999998877766654
No 232
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.31 E-value=32 Score=34.24 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=13.5
Q ss_pred CCccEEEEeccccccc
Q 008819 106 DNIQVYGFDYDYTLAH 121 (552)
Q Consensus 106 ~~i~~iGFDmDyTLa~ 121 (552)
...+.+-||||+||+.
T Consensus 3 ~~~~L~vFD~D~TLi~ 18 (212)
T COG0560 3 RMKKLAVFDLDGTLIN 18 (212)
T ss_pred CccceEEEecccchhh
Confidence 3457889999999998
No 233
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.01 E-value=61 Score=31.43 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=25.3
Q ss_pred ccccCCccEEEEeccccccccC-cchHHHHHHHHHHHHHH
Q 008819 102 NLRLDNIQVYGFDYDYTLAHYS-SNLQSLIYDLAKEHMVN 140 (552)
Q Consensus 102 ~l~L~~i~~iGFDmDyTLa~Y~-~~~~~L~y~~~~~~LV~ 140 (552)
.|.=..|+++.||.|.||+..+ .+... .+....+.+.+
T Consensus 35 ~Lk~~Gik~li~DkDNTL~~~~~~~i~~-~~~~~~~~l~~ 73 (168)
T PF09419_consen 35 HLKKKGIKALIFDKDNTLTPPYEDEIPP-EYAEWLNELKK 73 (168)
T ss_pred hhhhcCceEEEEcCCCCCCCCCcCcCCH-HHHHHHHHHHH
Confidence 3555789999999999998664 44433 23344555554
No 234
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=27.95 E-value=88 Score=31.49 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=32.0
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 279 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 279 k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
-.+...+.|++|+++|.+++++|+-++..+..++..+
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 56 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHVLEMQHILGAL 56 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc
Confidence 3567889999999999999999999999888777643
No 235
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=27.66 E-value=46 Score=31.86 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccchhHHH
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIR 425 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipELe~Ei~ 425 (552)
++.+++.+|++.++++.|||+. .|+.--+.+ ..++++ ..-..|++
T Consensus 191 i~~l~~~~~i~~~~~~~~GD~~-ND~~Ml~~~-~~~~am-~na~~~~k 235 (254)
T PF08282_consen 191 IKYLLEYLGISPEDIIAFGDSE-NDIEMLELA-GYSVAM-GNATPELK 235 (254)
T ss_dssp HHHHHHHHTTSGGGEEEEESSG-GGHHHHHHS-SEEEEE-TTS-HHHH
T ss_pred HHHHhhhcccccceeEEeeccc-ccHhHHhhc-CeEEEE-cCCCHHHH
Confidence 7889999999999999999999 888544444 334554 33344433
No 236
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=27.46 E-value=35 Score=31.71 Aligned_cols=15 Identities=33% Similarity=0.268 Sum_probs=12.9
Q ss_pred EEEEeccccccccCc
Q 008819 110 VYGFDYDYTLAHYSS 124 (552)
Q Consensus 110 ~iGFDmDyTLa~Y~~ 124 (552)
+|.||+|+||....+
T Consensus 3 ~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 3 VVVSDFDGTITLNDS 17 (188)
T ss_pred EEEEeCCCcccCCCc
Confidence 578999999998764
No 237
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=27.23 E-value=32 Score=32.13 Aligned_cols=38 Identities=21% Similarity=0.492 Sum_probs=28.4
Q ss_pred HHHhCcccccccc--hhHHHHHHHHHHcCCeEEEEeCCCh
Q 008819 268 GILSDPNRYLVKN--GQVLQFVKMLREKGKKLFLLTNSPY 305 (552)
Q Consensus 268 ~v~~np~kYi~k~--p~l~~~L~~Lk~~GkklfLiTNS~~ 305 (552)
-+.++||-+++|. ..+.++|..+.+.|.++++.|-||.
T Consensus 261 lliDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 261 LLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp EEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred EEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4567899999996 4667777666666789999999974
No 238
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=26.82 E-value=38 Score=32.15 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=11.9
Q ss_pred EEEeccccccccCc
Q 008819 111 YGFDYDYTLAHYSS 124 (552)
Q Consensus 111 iGFDmDyTLa~Y~~ 124 (552)
.-||+|+||+.-..
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 57999999999754
No 239
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=26.69 E-value=50 Score=31.68 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=13.3
Q ss_pred EEEEeccccccccCc
Q 008819 110 VYGFDYDYTLAHYSS 124 (552)
Q Consensus 110 ~iGFDmDyTLa~Y~~ 124 (552)
.|-||||+||+.+.+
T Consensus 2 ~viFDldgvL~d~~~ 16 (199)
T PRK09456 2 LYIFDLGNVIVDIDF 16 (199)
T ss_pred EEEEeCCCccccCcH
Confidence 689999999999864
No 240
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=26.68 E-value=33 Score=34.31 Aligned_cols=15 Identities=40% Similarity=0.622 Sum_probs=12.9
Q ss_pred cEEEEeccccccccC
Q 008819 109 QVYGFDYDYTLAHYS 123 (552)
Q Consensus 109 ~~iGFDmDyTLa~Y~ 123 (552)
.++-||+||||+...
T Consensus 4 ~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 4 RAFFFDYDGTLSEIV 18 (244)
T ss_pred EEEEEecCccccCCc
Confidence 467899999999985
No 241
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=26.49 E-value=93 Score=37.72 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccc
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 360 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~ 360 (552)
|++++.+++|+++|+++.++|+-+..-+..+.+.+ |-+ =|-|+++. -+...+.
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-------GI~----~~~v~~G~----------el~~l~~------ 605 (902)
T PRK10517 553 ETTAPALKALKASGVTVKILTGDSELVAAKVCHEV-------GLD----AGEVLIGS----------DIETLSD------ 605 (902)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-------CCC----ccCceeHH----------HHHhCCH------
Confidence 68999999999999999999999999999888865 321 02344443 1111110
Q ss_pred ccccc-ccCCCeeeccCcHH---HHHHHhCCCCCcEEEEccccccccccccc
Q 008819 361 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSK 408 (552)
Q Consensus 361 ~~~v~-~l~~g~vY~~Gn~~---~l~~~lg~~g~eVLY~GDhi~gDI~~ak~ 408 (552)
.... ..+...||..-+-+ ++.+.+.-.|.-|.++||-+ .|.-+-|+
T Consensus 606 -~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGv-NDaPALk~ 655 (902)
T PRK10517 606 -DELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGI-NDAPALRA 655 (902)
T ss_pred -HHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCc-chHHHHHh
Confidence 0011 12234566654432 34455556788999999998 78754443
No 242
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.29 E-value=68 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHH
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVD 309 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~ 309 (552)
+++.+.++..|+.|.+++.+||++..-..
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence 57889999999999999999999765444
No 243
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=26.10 E-value=1.5e+02 Score=31.60 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
+...++|++|+++|+.++++|.....-+..+++-+
T Consensus 21 ~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~L 55 (302)
T PRK12702 21 GAARQALAALERRSIPLVLYSLRTRAQLEHLCRQL 55 (302)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh
Confidence 55889999999999999999999999888877754
No 244
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=25.70 E-value=1e+02 Score=37.32 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCccc
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 360 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~ 360 (552)
|++++.+++||++|+++.++|+-+..-+..+.+.+ |-. + +.++++. -+...+.+
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~l-------GI~--~--~~vi~G~----------el~~~~~~----- 606 (903)
T PRK15122 553 ESAAPAIAALRENGVAVKVLTGDNPIVTAKICREV-------GLE--P--GEPLLGT----------EIEAMDDA----- 606 (903)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-------CCC--C--CCccchH----------hhhhCCHH-----
Confidence 68999999999999999999999999999888865 321 0 2244333 11111110
Q ss_pred ccccc-ccCCCeeeccCcHH---HHHHHhCCCCCcEEEEccccccccccccc
Q 008819 361 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSK 408 (552)
Q Consensus 361 ~~~v~-~l~~g~vY~~Gn~~---~l~~~lg~~g~eVLY~GDhi~gDI~~ak~ 408 (552)
... ..+...||..-+-+ ++.+.+.-.|.-|.++||-+ .|.-+-++
T Consensus 607 --el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamtGDGv-NDaPALk~ 655 (903)
T PRK15122 607 --ALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGI-NDAPALRD 655 (903)
T ss_pred --HHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEECCCc-hhHHHHHh
Confidence 011 12234577654432 34455556788999999998 77754443
No 245
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=25.61 E-value=69 Score=39.52 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
-|++++.+++|+++|+++.++|+-+..-+..+.+-+
T Consensus 648 r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~ 683 (1053)
T TIGR01523 648 RNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEV 683 (1053)
T ss_pred chhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc
Confidence 468999999999999999999999999988888754
No 246
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=25.28 E-value=37 Score=33.55 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=13.8
Q ss_pred ccEEEEeccccccccCc
Q 008819 108 IQVYGFDYDYTLAHYSS 124 (552)
Q Consensus 108 i~~iGFDmDyTLa~Y~~ 124 (552)
.++.-||+|+||.+=..
T Consensus 5 ~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQDM 21 (210)
T ss_pred CcEEEEcCCCCCccCcc
Confidence 46789999999987643
No 247
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=24.84 E-value=39 Score=31.49 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.7
Q ss_pred CCCCCcEEEEccccccccc
Q 008819 386 KWNGPEVIYFGDHLFSDLR 404 (552)
Q Consensus 386 g~~g~eVLY~GDhi~gDI~ 404 (552)
+.....++||||+. +|+.
T Consensus 172 ~~~~~~~~~iGDs~-~D~~ 189 (192)
T PF12710_consen 172 DIDPDRVIAIGDSI-NDLP 189 (192)
T ss_dssp THTCCEEEEEESSG-GGHH
T ss_pred CCCCCeEEEEECCH-HHHH
Confidence 67889999999999 8874
No 248
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=24.45 E-value=55 Score=38.72 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
-|+.++.+++||++|+++.++|+-+..-+..+-+.+
T Consensus 444 R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l 479 (755)
T TIGR01647 444 RHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL 479 (755)
T ss_pred hhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 368999999999999999999999999999888865
No 249
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=24.06 E-value=54 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhH
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFV 308 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~ 308 (552)
+|.-.+-|.+|.++|.+|-++|=+.+.++
T Consensus 1 d~~~qegLr~L~~aG~~v~iM~~~eF~~C 29 (55)
T PF05240_consen 1 DPDYQEGLRRLCQAGAQVSIMTYSEFQYC 29 (55)
T ss_dssp SHHHHHHHHHHHHTT-EEEE--HHHHHHH
T ss_pred CcHHHHHHHHHHHCCCeEEecCcHHHHHH
Confidence 46678899999999999999998877766
No 250
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=23.58 E-value=98 Score=30.70 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=36.8
Q ss_pred ccccccchhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhh
Q 008819 274 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 315 (552)
Q Consensus 274 ~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl 315 (552)
.-|+.+-|++.++|+.+-+ ...+++-|.+...|++.+|+.+
T Consensus 41 ~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 41 TGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHh
Confidence 3467889999999999987 5999999999999999999975
No 251
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=22.94 E-value=45 Score=30.76 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=6.1
Q ss_pred EEEEecccccccc
Q 008819 110 VYGFDYDYTLAHY 122 (552)
Q Consensus 110 ~iGFDmDyTLa~Y 122 (552)
++.||+|+||++-
T Consensus 2 ~LVlDLD~TLv~~ 14 (159)
T PF03031_consen 2 TLVLDLDGTLVHS 14 (159)
T ss_dssp EEEEE-CTTTEEE
T ss_pred EEEEeCCCcEEEE
Confidence 3445555555544
No 252
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=22.82 E-value=93 Score=36.65 Aligned_cols=43 Identities=16% Similarity=-0.117 Sum_probs=0.0
Q ss_pred cccccCCccEEEEeccccccccCcchHHHHHHHHHHHHHHhcCCC
Q 008819 101 KNLRLDNIQVYGFDYDYTLAHYSSNLQSLIYDLAKEHMVNEFRYP 145 (552)
Q Consensus 101 r~l~L~~i~~iGFDmDyTLa~Y~~~~~~L~y~~~~~~LV~~~gYP 145 (552)
+.......++|-+||||||..-...... .--.+++.|.+ .|+|
T Consensus 409 ~~~~~~~~KLIfsDLDGTLLd~d~~i~~-~t~eAL~~L~e-kGI~ 451 (694)
T PRK14502 409 LPSSGQFKKIVYTDLDGTLLNPLTYSYS-TALDALRLLKD-KELP 451 (694)
T ss_pred CCCcCceeeEEEEECcCCCcCCCCccCH-HHHHHHHHHHH-cCCe
No 253
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=22.04 E-value=1.4e+02 Score=22.10 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=31.3
Q ss_pred HHhCcccccccchhHHHHHHHHHHcCCeEEEEeCCChHh
Q 008819 269 ILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYF 307 (552)
Q Consensus 269 v~~np~kYi~k~p~l~~~L~~Lk~~GkklfLiTNS~~~y 307 (552)
++..+--.+.++..+.+.++.|++.|...+.++|+.-.+
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~ 42 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKL 42 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBE
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEE
Confidence 444466677788889999999999999999999877433
No 254
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=21.93 E-value=6.2e+02 Score=24.20 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecCcCcccc
Q 008819 282 QVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAF 361 (552)
Q Consensus 282 ~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~~gk~~~ 361 (552)
.+++.+++|.+. .+++++|.--..++....+.+ |.+- +-|...| |++.
T Consensus 34 ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~-------gi~~----~rv~a~a---------------~~e~----- 81 (152)
T COG4087 34 EVSETIQELHDM-VDIYIASGDRKGSLVQLAEFV-------GIPV----ERVFAGA---------------DPEM----- 81 (152)
T ss_pred hhHHHHHHHHHh-heEEEecCCcchHHHHHHHHc-------CCce----eeeeccc---------------CHHH-----
Confidence 455667777777 889999988888887777754 3221 1121122 1110
Q ss_pred ccccccCCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEEeccc
Q 008819 362 TKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 420 (552)
Q Consensus 362 ~~v~~l~~g~vY~~Gn~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~VipEL 420 (552)
=..+++.++-+++.|+.|||-+ .|+..-+++..-.+-|-+|-
T Consensus 82 ----------------K~~ii~eLkk~~~k~vmVGnGa-ND~laLr~ADlGI~tiq~e~ 123 (152)
T COG4087 82 ----------------KAKIIRELKKRYEKVVMVGNGA-NDILALREADLGICTIQQEG 123 (152)
T ss_pred ----------------HHHHHHHhcCCCcEEEEecCCc-chHHHhhhcccceEEeccCC
Confidence 0125666777889999999999 88987776544333343443
No 255
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.91 E-value=3.2e+02 Score=27.12 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCC
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDF 342 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~F 342 (552)
+.+.++|+.+|+.|+|..|+=|-..+.-. + ..|-+.-|.|.+-+-.|+|
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~~-~------------~~~l~~vD~VlvMsV~PG~ 140 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVEE-L------------EPYLDQVDMVLVMSVEPGF 140 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GGG-G------------TTTGCCSSEEEEESS-TTT
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCchH-H------------HHHhhhcCEEEEEEecCCC
Confidence 45778999999999999998877654322 1 2455678999999999987
No 256
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=21.62 E-value=1.7e+02 Score=29.11 Aligned_cols=35 Identities=9% Similarity=-0.128 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhh
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 314 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~y 314 (552)
.|.+.+++++++++|++++++|..+..-+..+.+.
T Consensus 23 ~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~ 57 (249)
T TIGR01485 23 LLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQ 57 (249)
T ss_pred HHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhc
Confidence 37899999999999999999999999988887663
No 257
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=21.48 E-value=1.7e+02 Score=28.13 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChHhHHHhHhhhhcc
Q 008819 280 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLED 318 (552)
Q Consensus 280 ~p~l~~~L~~Lk~~GkklfLiTNS~~~y~~~vM~yl~~~ 318 (552)
.|++.++.++++++|+++.-+|.-+..-.+...+||-..
T Consensus 29 h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 29 HPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998654
No 258
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=21.10 E-value=6.7e+02 Score=28.54 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHcCCeEEEEeC----CChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCcceeeecC-
Q 008819 281 GQVLQFVKMLREKGKKLFLLTN----SPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE- 355 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTN----S~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~FF~~~~pFr~vd~~- 355 (552)
.++..+++.|++... +.==|+ =..+-...+|...| .. |+|-+..+||.-|..+.||-+ ++.
T Consensus 289 ~~~~~l~~~~~~~~~-~~P~~~~lspige~~i~~gl~~~~------~p------~f~~~~tr~p~~y~g~~pfiV-E~~i 354 (488)
T TIGR01052 289 DEAEKIVNAFKEMKF-MAPPTDGLSPIGEENIEKGLKEIL------QP------EFVGAVTRSPKTYRGGIPFIV-EVGI 354 (488)
T ss_pred HHHHHHHHHHHhcCC-CCCCccccCCCCHHHHHHHHHHhc------Cc------cEEEEeccCCccccCCCCeEE-EEee
Confidence 467777777877531 111111 12445555555544 23 568899999999977789943 432
Q ss_pred -cCcc--cccccc--cc--CCCeeeccCc--HHHHHHHhCCCC---------CcEEEEccccccccccc-ccCCcEEEEE
Q 008819 356 -KDTL--AFTKVD--AF--IPNKIYYHGC--LKSFLQITKWNG---------PEVIYFGDHLFSDLRGP-SKAGWRTAAI 416 (552)
Q Consensus 356 -~gk~--~~~~v~--~l--~~g~vY~~Gn--~~~l~~~lg~~g---------~eVLY~GDhi~gDI~~a-k~~GwrT~~V 416 (552)
.|.- ..+++. .+ .-|-+|.+|+ ..++.+..+|+. +=++.| |+-+ ..-+ +..|=..++=
T Consensus 355 ayGg~~~~~~~~~i~RfaNrvPLl~~~g~~~~t~~v~~i~w~~Y~~~~~~~~p~~v~v--hi~S-t~vPf~s~~Ke~ia~ 431 (488)
T TIGR01052 355 AYGGNIGRRSEPEILRYANKVPLLYDAGSCVLTKAVKSINWKRYGIRDFPSAPLVVLV--NLAS-TNVPYTSTGKQSVAD 431 (488)
T ss_pred ecCCcCCCCCceeEEEecccCceeecccccHHHHHHHhCChhhcCCCCCCCCCEEEEE--EEee-cCCCCCCcchhhhcC
Confidence 2211 001111 11 2367898887 346777777752 112222 3322 2222 3467777888
Q ss_pred eccchhHHHHhhc
Q 008819 417 IHELESEIRIQND 429 (552)
Q Consensus 417 ipELe~Ei~~~~~ 429 (552)
+||+++||+..-.
T Consensus 432 ~~ei~~ei~~al~ 444 (488)
T TIGR01052 432 IPEIYNEIRLALM 444 (488)
T ss_pred CHHHHHHHHHHHH
Confidence 8999999886544
No 259
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=21.08 E-value=2.6e+02 Score=26.38 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=10.8
Q ss_pred HhCCCCCcEEEEcccc
Q 008819 384 ITKWNGPEVIYFGDHL 399 (552)
Q Consensus 384 ~lg~~g~eVLY~GDhi 399 (552)
-+....++++.||||-
T Consensus 212 ~l~~~~~~~vlvGD~~ 227 (236)
T PF13086_consen 212 PLSRAPKRIVLVGDPK 227 (236)
T ss_dssp HHTTTBSEEEEEE-TT
T ss_pred HHHHhCCEEEEECChh
Confidence 3444449999999985
No 260
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=21.00 E-value=83 Score=33.90 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=26.2
Q ss_pred CCcEEEEcccccccccccc---------------cCCcEEEEEeccc
Q 008819 389 GPEVIYFGDHLFSDLRGPS---------------KAGWRTAAIIHEL 420 (552)
Q Consensus 389 g~eVLY~GDhi~gDI~~ak---------------~~GwrT~~VipEL 420 (552)
.+.+-.|||+..+||+.|. ..||-.++|.-..
T Consensus 297 ~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV 343 (389)
T KOG1618|consen 297 IKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGV 343 (389)
T ss_pred cceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeee
Confidence 4577889999999999885 6799999995433
No 261
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=20.96 E-value=48 Score=36.39 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=15.3
Q ss_pred CCccEEEEeccccccccCc
Q 008819 106 DNIQVYGFDYDYTLAHYSS 124 (552)
Q Consensus 106 ~~i~~iGFDmDyTLa~Y~~ 124 (552)
..=+.++||||+||+.=++
T Consensus 73 ~~~K~i~FD~dgtlI~t~s 91 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKS 91 (422)
T ss_pred CCcceEEEecCCceeecCC
Confidence 4457899999999987654
No 262
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=20.66 E-value=50 Score=33.29 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCcEEEEE
Q 008819 378 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 416 (552)
Q Consensus 378 ~~~l~~~lg~~g~eVLY~GDhi~gDI~~ak~~GwrT~~V 416 (552)
++.+++.+|++.++|+.|||+. .||.--+.+|+ .+++
T Consensus 193 l~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ag~-~vAm 229 (272)
T PRK15126 193 LAVLSQHLGLSLADCMAFGDAM-NDREMLGSVGR-GFIM 229 (272)
T ss_pred HHHHHHHhCCCHHHeEEecCCH-HHHHHHHHcCC-ceec
Confidence 8889999999999999999999 88966566665 4554
No 263
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=20.18 E-value=2.2e+02 Score=29.56 Aligned_cols=75 Identities=25% Similarity=0.416 Sum_probs=51.8
Q ss_pred HHHHHHHHHHh---h--------hchh------hHHHHHhCcccccccch----------hHHHHHHHHHHcCCeEEEEe
Q 008819 249 YEDVNRAIQHV---H--------RRGL------VHRGILSDPNRYLVKNG----------QVLQFVKMLREKGKKLFLLT 301 (552)
Q Consensus 249 ~~DV~~Av~~v---H--------~~G~------lk~~v~~np~kYi~k~p----------~l~~~L~~Lk~~GkklfLiT 301 (552)
++.|.+|++.| | .+|. +-+.+++||+-++.--| .+.++|++|++.|+.+.++|
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vt 196 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVT 196 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 77888888776 1 2443 55677889988876544 46889999999998777777
Q ss_pred CCChHhHHHhHhhhhccCCCCCCCccCCccEEEEcCCCCCC
Q 008819 302 NSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDF 342 (552)
Q Consensus 302 NS~~~y~~~vM~yl~~~~~~~g~~W~dyFD~VIv~A~KP~F 342 (552)
-- .+.++. |||-||+-.++-..
T Consensus 197 HD----L~~v~~---------------~~D~vi~Ln~~~~~ 218 (254)
T COG1121 197 HD----LGLVMA---------------YFDRVICLNRHLIA 218 (254)
T ss_pred CC----cHHhHh---------------hCCEEEEEcCeeEe
Confidence 43 233333 67888887755433
No 264
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.12 E-value=1.1e+02 Score=28.79 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCCh
Q 008819 281 GQVLQFVKMLREKGKKLFLLTNSPY 305 (552)
Q Consensus 281 p~l~~~L~~Lk~~GkklfLiTNS~~ 305 (552)
+.+.++++.+|+.|.++.|-||...
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Confidence 4799999999999999999999644
Done!