BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008820
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 118/300 (39%), Gaps = 49/300 (16%)
Query: 232 KDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDF 282
+ +V+GL +K D L GH V L + + S D ++ VW +
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP---------LGHEPLKK 333
++T H AV+++ + + ++ I VW + P +GH
Sbjct: 204 EMLNTLI---HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR---- 256
Query: 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG 393
+ ++ + +Y+ + SGDRTIK W+ T++GHK ++ L +
Sbjct: 257 ---------AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR 307
Query: 394 VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW-- 451
++ SGS D TIRLW + + L VLE G V + +V G IKVW
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLE----GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363
Query: 452 ---------RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIP 502
++++ H G VF + + + + D T+ + + D + P
Sbjct: 364 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPP 423
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 13/160 (8%)
Query: 344 GIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT--MSGHKSAVSTLAVCNGVLYSGSRD 401
G++ L + + +G D TIK W TL C ++GH +V L V+ +GS D
Sbjct: 135 GVYCLQYDDQKIVSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQYDERVIITGSSD 192
Query: 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW-----RNDKF 456
T+R+W ++ +L L +VL L +V + SI VW +
Sbjct: 193 STVRVWDVNTGEMLNTLIHH----CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 457 MKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEF 496
+ + H+ +V V + K++ + D+T+ V + EF
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 288
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 13/131 (9%)
Query: 407 WSLSDHSLLTV--LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQT 462
W HSL + E S G V L +V +IK+W + + +
Sbjct: 116 WRCGRHSLQRIHCRSETSKG----VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG 171
Query: 463 HKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKL 522
H GSV + + + + TG D TV V ++ E +I C +V+ L + G +
Sbjct: 172 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH----CEAVL-HLRFNNGMM 226
Query: 523 FVGCADRTVKI 533
DR++ +
Sbjct: 227 VTCSKDRSIAV 237
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 102/217 (47%), Gaps = 13/217 (5%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L GH V + + + S S D ++ VW ++ +H GH V AV V D
Sbjct: 195 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH---VAAVRCVQYDGRR 251
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367
+SG + VW L+ + +++L G ++ +GS D +I+ W
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQG-------HTNRVYSLQFDGIHVVSGSLDTSIRVW 304
Query: 368 SLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS 427
+ G T++GH+S S + + + +L SG+ D T+++W + L L+ + S
Sbjct: 305 DVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ-S 363
Query: 428 SVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQT 462
+V L ++ ++ S + G++K+W + +F++++ T
Sbjct: 364 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L GH V + G + S ++D + VW + + +HT +GH ++V ++ + D
Sbjct: 235 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIH 291
Query: 308 CISGDSGGGIFVWSFSFP------LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361
+SG I VW GH+ L E KD L +G+ D
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-------------NILVSGNAD 338
Query: 362 RTIKAWSLLDGTLSCTMSG---HKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSL---L 415
T+K W + G T+ G H+SAV+ L + + S DGT++LW L L
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Query: 416 TVLEEDSSGAV 426
LE SG V
Sbjct: 399 VTLESGGSGGV 409
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 106/265 (40%), Gaps = 32/265 (12%)
Query: 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS------FSFPLGHEP 330
W + KGHD V+ + ++ +SG + VWS +GH
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHT- 159
Query: 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390
G+ + + +GS DRT+K W+ G T+ GH S V + +
Sbjct: 160 ------------GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 391 CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
+ SGSRD T+R+W + L VL G V++V + +V +KV
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVL----MGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 451 W--RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPC 508
W + + ++Q H V+++ +G + +G D ++ V ++ + ++
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 509 GSVITALLYWQGKLFVGCADRTVKI 533
G + + L G AD TVKI
Sbjct: 324 GMELKDNI-----LVSGNADSTVKI 343
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 11/214 (5%)
Query: 243 VKFKDLQGHRDCVTG--LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300
V + L GH V L+ G F S S+D + +W L F GH V++V +
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480
Query: 301 -VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359
+D Q + S D I +W+ + + +DW + T + + S
Sbjct: 481 SLDNRQIVSASRDRT--IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVL-YSGSRDGTIRLWSLSDHSLLTV 417
D+T+K W+L + L T++GH VST+AV +G L SG +DG + LW L++ L
Sbjct: 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
LE +S V L + ++ L + E G IK+W
Sbjct: 599 LEANS---VIHALCFSPNRYWLCAATEHG-IKIW 628
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 35/190 (18%)
Query: 249 QGHRDCVTGLAVGGGFL----FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDED 304
+GHRD V+ + L S+S+DK++ VW+L + T GH V + V V D
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV-STVAVSPD 572
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRT 363
LC SG G + +W + E K ++ E + S IHAL S RY + +
Sbjct: 573 GSLCASGGKDGVVLLWDLA-----EGKKLYSLEAN---SVIHALCFSPNRYWLCAATEHG 624
Query: 364 IKAWSLLDGTL-------------SCTMSGHKSAVSTLAVCNGV--------LYSGSRDG 402
IK W L ++ SG + + C + L+SG DG
Sbjct: 625 IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684
Query: 403 TIRLWSLSDH 412
IR+W + +
Sbjct: 685 VIRVWGIGRY 694
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 244 KFKDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKD-FSHVHTFKGHDHKVMAVVY 300
K D + H D + +AV ++ S S D ++ +W+ ++ ++ TF+GH+H VM V +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360
+D SG + VWS + L +E+ Y + L Y+ T S
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKP-YMITASD 206
Query: 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTV 417
D TIK W + T+ GH S VS AV + ++ SGS DGT+++W+ S + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Query: 418 LE 419
L
Sbjct: 266 LN 267
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 244 KFKDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKD-FSHVHTFKGHDHKVMAVVY 300
K D + H D + +AV ++ S S D ++ +W+ ++ ++ TF+GH+H VM V +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360
+D SG + VWS + L +E+ Y + L Y+ T S
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKP-YMITASD 206
Query: 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTV 417
D TIK W + T+ GH S VS AV + ++ SGS DGT+++W+ S + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Query: 418 LE 419
L
Sbjct: 266 LN 267
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 244 KFKDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKD-FSHVHTFKGHDHKVMAVVY 300
K D + H D + +AV ++ S S D ++ +W+ ++ ++ TF+GH+H VM V +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360
+D SG + VWS + L +E+ Y + L Y+ T S
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDK-PYMITASD 206
Query: 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTV 417
D TIK W + T+ GH S VS AV + ++ SGS DGT+++W+ S + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Query: 418 L 418
L
Sbjct: 266 L 266
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 120/258 (46%), Gaps = 22/258 (8%)
Query: 246 KDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+ L+GH V+ +A+ G F S+S+D S+ +W+L++ + F GH V++V + +
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363
++ + +SG + VW+ H + DW + + + +G D
Sbjct: 121 NRQI-VSGGRDNALRVWNVKGECMHTLSR--GAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 364 IKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGS-RDGTIRLWSLSDHSLLTVLEED 421
+K W L G L + GH + V+++ V +G L + S +DG RLW L+ L+ E
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS---EM 234
Query: 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVW---RNDKFMKSMQTHKGS--------VFAV 470
++GA + + + ++ + + E G I+++ D ++ H+GS A
Sbjct: 235 AAGAPINQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAW 293
Query: 471 FLEGKWLFTGGWDKTVSV 488
+G L++G D + V
Sbjct: 294 SADGSTLYSGYTDNVIRV 311
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 39/156 (25%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404
AL+ +G + + S D +++ W+L +G GH V ++A N + SG RD +
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNAL 133
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHK 464
R+W++ + T+ + VS V
Sbjct: 134 RVWNVKGECMHTLSRGAHTDWVSCVR---------------------------------- 159
Query: 465 GSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDV 500
F+ L+ + +GGWD V V +LA D+
Sbjct: 160 ---FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 244 KFKDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKD-FSHVHTFKGHDHKVMAVVY 300
K D + H D + +AV ++ S S D ++ +W+ ++ ++ TF+GH+H VM V +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360
+D SG + VWS + L +E+ Y + L Y+ T S
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDK-PYMITASD 206
Query: 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTV 417
D TIK W + T+ GH S VS AV + ++ SGS DGT+++W+ S + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Query: 418 L 418
L
Sbjct: 266 L 266
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 73
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 189 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 247
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 292
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 80
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 196 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 83
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 199 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 80
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 196 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 77
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 193 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 77
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 193 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 94
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 210 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 268
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 313
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 80
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 196 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 76
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 192 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 250
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 295
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 325 PLGHEPLKKWNEEKDWRYSGIHALTTS------GRYLYTGSGDRTIKAWSLLDGTLSCTM 378
PLG P+K N + +G +S G +L + S D+ IK W DG T+
Sbjct: 2 PLGSTPVKP-NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 60
Query: 379 SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436
SGHK +S +A + +L S S D T+++W +S L L+ S+ + Q
Sbjct: 61 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN---PQ 117
Query: 437 HTLVVSHE-SGSIKVW--RNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491
L+VS S+++W + K +K++ H V AV +G + + +D + +
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 492 AGDEFEEDVIPTGAIP 507
A + + +I P
Sbjct: 178 ASGQCLKTLIDDDNPP 193
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 78
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 194 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 252
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 297
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 82
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 198 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 256
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 301
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 83
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 199 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 99
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 215 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 273
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 318
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 83
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 199 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 101
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 217 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 275
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 320
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L +SS DK I +W D T GH + V + D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 80
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ ++K+W K +K+ HK + +F GKW
Sbjct: 196 PPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 12/217 (5%)
Query: 245 FKDLQGHRDCV--TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD 302
K L+GH + V + S SFD+S+ +W +K + T H V A V+ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHFN 161
Query: 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362
D L +S G +W + + LK ++ + S + + +G+Y+ + D
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVK-FSPNGKYILAATLDN 217
Query: 363 TIKAWSLLDGTLSCTMSGHKSA----VSTLAVCNGV-LYSGSRDGTIRLWSLSDHSLLTV 417
T+K W G T +GHK+ + +V G + SGS D + +W+L ++
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454
L+ + +S+ T +IK+W++D
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 25/285 (8%)
Query: 248 LQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GH V+ + + G +L SSS DK I +W D T GH + V + D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDS 80
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L +S + +W S + LK + Y + +GS D +++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ H VS + ++ S S DG R+W + L L +D +
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLE-----GKW 476
VS V ++ L + ++ +K+W K +K+ HK + +F GKW
Sbjct: 196 PPVSFVKFSPNGKYILAATLDN-DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 477 LFTGGWDKTVSVQELAGDEFEED-------VIPTGAIPCGSVITA 514
+ +G D V + L E + VI T P ++I +
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 240 KGNVKFKDLQGH----RDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV 295
K V + +GH +DC L G + S+S+DK++ +W + F GH V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCT--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWS-----FSFPLGHEPLKKWNEEKDW----RYSGIH 346
M+ V +D+ + ISG I VW+ + LGH DW R
Sbjct: 111 MS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN---------DWVSQVRVVPNE 160
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL-AVCNGVLY-SGSRDGTI 404
+ + D+ +KAW+L + GH S ++TL A +G L S +DG I
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 405 RLWSLSDHSLLTVL 418
LW+L+ + L
Sbjct: 221 MLWNLAAKKAMYTL 234
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 58/181 (32%)
Query: 248 LQGHRDCVTGLAVGGG---FLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVV 299
L+GH VT LA G L S+S DK++ W L V +FKGH H V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359
LT G Y + S
Sbjct: 73 ------------------------------------------------LTADGAYALSAS 84
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTV 417
D+T++ W + G GHKS V ++ + ++ SGSRD TI++W++ L T+
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL 144
Query: 418 L 418
L
Sbjct: 145 L 145
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 240 KGNVKFKDLQGH----RDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV 295
K V + +GH +DC L G + S+S+DK++ +W + F GH V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCT--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWS-----FSFPLGHEPLKKWNEEKDW----RYSGIH 346
M+ V +D+ + ISG I VW+ + LGH DW R
Sbjct: 111 MS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN---------DWVSQVRVVPNE 160
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL-AVCNGVLY-SGSRDGTI 404
+ + D+ +KAW+L + GH S ++TL A +G L S +DG I
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 405 RLWSLSDHSLLTVL 418
LW+L+ + L
Sbjct: 221 MLWNLAAKKAMYTL 234
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 58/181 (32%)
Query: 248 LQGHRDCVTGLAVGGG---FLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVV 299
L+GH VT LA G L S+S DK++ W L V +FKGH H V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359
LT G Y + S
Sbjct: 73 ------------------------------------------------LTADGAYALSAS 84
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTV 417
D+T++ W + G GHKS V ++ + ++ SGSRD TI++W++ L T+
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL 144
Query: 418 L 418
L
Sbjct: 145 L 145
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 240 KGNVKFKDLQGH----RDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV 295
K V + +GH +DC L G + S+S+DK++ +W + F GH V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCT--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWS-----FSFPLGHEPLKKWNEEKDW----RYSGIH 346
M+ V +D+ + ISG I VW+ + LGH DW R
Sbjct: 111 MS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN---------DWVSQVRVVPNE 160
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL-AVCNGVLY-SGSRDGTI 404
+ + D+ +KAW+L + GH S ++TL A +G L S +DG I
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 405 RLWSLSDHSLLTVL 418
LW+L+ + L
Sbjct: 221 MLWNLAAKKAMYTL 234
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 58/181 (32%)
Query: 248 LQGHRDCVTGLAVGGG---FLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVV 299
L+GH VT LA G L S+S DK++ W L V +FKGH H V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359
LT G Y + S
Sbjct: 73 ------------------------------------------------LTADGAYALSAS 84
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTV 417
D+T++ W + G GHKS V ++ + ++ SGSRD TI++W++ L T+
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL 144
Query: 418 L 418
L
Sbjct: 145 L 145
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 240 KGNVKFKDLQGH----RDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV 295
K V + +GH +DC L G + S+S+DK++ +W + F GH V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCT--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWS-----FSFPLGHEPLKKWNEEKDW----RYSGIH 346
M+ V +D+ + ISG I VW+ + LGH DW R
Sbjct: 111 MS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN---------DWVSQVRVVPNE 160
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL-AVCNGVLY-SGSRDGTI 404
+ + D+ +KAW+L + GH S ++TL A +G L S +DG I
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 405 RLWSLSDHSLLTVL 418
LW+L+ + L
Sbjct: 221 MLWNLAAKKAMYTL 234
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 58/181 (32%)
Query: 248 LQGHRDCVTGLAVGGG---FLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVV 299
L+GH VT LA G L S+S DK++ W L V +FKGH H V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359
LT G Y + S
Sbjct: 73 ------------------------------------------------LTADGAYALSAS 84
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTV 417
D+T++ W + G GHKS V ++ + ++ SGSRD TI++W++ L T+
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL 144
Query: 418 L 418
L
Sbjct: 145 L 145
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 240 KGNVKFKDLQGH----RDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV 295
K V + +GH +DC L G + S+S+DK++ +W + F GH V
Sbjct: 47 KFGVPVRSFKGHSHIVQDCT--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 104
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWS-----FSFPLGHEPLKKWNEEKDW----RYSGIH 346
M+ V +D+ + ISG I VW+ + LGH DW R
Sbjct: 105 MS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN---------DWVSQVRVVPNE 154
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL-AVCNGVLY-SGSRDGTI 404
+ + D+ +KAW+L + GH S ++TL A +G L S +DG I
Sbjct: 155 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 214
Query: 405 RLWSLSDHSLLTVL 418
LW+L+ + L
Sbjct: 215 MLWNLAAKKAMYTL 228
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 58/181 (32%)
Query: 248 LQGHRDCVTGLAVGGG---FLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVV 299
L+GH VT LA G L S+S DK++ W L V +FKGH H V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359
LT G Y + S
Sbjct: 67 ------------------------------------------------LTADGAYALSAS 78
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTV 417
D+T++ W + G GHKS V ++ + ++ SGSRD TI++W++ L T+
Sbjct: 79 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL 138
Query: 418 L 418
L
Sbjct: 139 L 139
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 145/325 (44%), Gaps = 51/325 (15%)
Query: 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD 302
+ L GH V G+A G + S+S DK++ +W+ ++ + T GH V V +
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 303 EDQPLCISGDSGGGIFVWSFSFPL-----GHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357
+ Q + + D + +W+ + L GH W G+ A + G+ + +
Sbjct: 109 DGQTIASASDDKT-VKLWNRNGQLLQTLTGHSS-SVW---------GV-AFSPDGQTIAS 156
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL 415
S D+T+K W+ +G L T++GH S+V +A + S S D T++LW+ + L
Sbjct: 157 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 215
Query: 416 TVLEEDSSGAVSSV--LSLTAVQHTLVVSHESGSIKVW-RNDKFMKSMQTHKGSVFAVFL 472
T+ +G SSV ++ + T+ + + ++K+W RN + ++++ H SV V
Sbjct: 216 TL-----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAF 270
Query: 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI------PCGSVITALLYWQGKLFV 524
+G+ + + DKTV + G + + ++ P G I +
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS---------- 320
Query: 525 GCADRTVKIALCNRQIPEIFSLLLH 549
D+TVK L NR + +L H
Sbjct: 321 ASDDKTVK--LWNRNGQHLQTLTGH 343
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 31/238 (13%)
Query: 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD 302
+ L GH V G+A G + S+S DK++ +W+ ++ + T GH V V +
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRP 272
Query: 303 EDQPLCISGDSGGGIFVWSFSFPL-----GHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357
+ Q + + D + +W+ + L GH W G+ A + G+ + +
Sbjct: 273 DGQTIASASDDKT-VKLWNRNGQLLQTLTGHSS-SVW---------GV-AFSPDGQTIAS 320
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL 415
S D+T+K W+ +G T++GH S+V +A + S S D T++LW+ + L
Sbjct: 321 ASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 379
Query: 416 TVLEEDSSGAVSSV--LSLTAVQHTLVVSHESGSIKVW-RNDKFMKSMQTHKGSVFAV 470
T+ +G SSV ++ + T+ + + ++K+W RN + ++++ H SV+ V
Sbjct: 380 TL-----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 432
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404
A + G+ + + S D+T+K W+ +G L T++GH S+V +A + S S D T+
Sbjct: 23 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSV--LSLTAVQHTLVVSHESGSIKVW-RNDKFMKSMQ 461
+LW+ + L T+ +G SSV ++ + T+ + + ++K+W RN + ++++
Sbjct: 82 KLWNRNGQLLQTL-----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 462 THKGSVFAVFL--EGKWLFTGGWDKTV 486
H SV+ V +G+ + + DKTV
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTV 163
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD 302
+ L GH V G+A G + S+S DK++ +W+ ++ + T GH V V +
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 518
Query: 303 EDQPLCISGDSGGGIFVWSFSFPL-----GHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357
+ Q + + D + +W+ + L GH W G+ A + G+ + +
Sbjct: 519 DGQTIASASDDKT-VKLWNRNGQLLQTLTGHSS-SVW---------GV-AFSPDGQTIAS 566
Query: 358 GSGDRTIKAWS 368
S D+T+K W+
Sbjct: 567 ASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 38/274 (13%)
Query: 246 KDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+ L+GH D V ++ G L S S D +I +W + F + T GHDH V +V +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363
+ +S I +W +K + ++W + G + + S D+T
Sbjct: 204 GDHI-VSASRDKTIKMWEVQTGYC---VKTFTGHREW--VRMVRPNQDGTLIASCSNDQT 257
Query: 364 IKAWSLLDGTLSCTMSGHK-----------SAVSTLAVCNG-----------VLYSGSRD 401
++ W + + H+ S+ S+++ G L SGSRD
Sbjct: 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317
Query: 402 GTIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMK 458
TI++W +S L+T++ D+ V VL + + L + + +++VW +N + MK
Sbjct: 318 KTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKRCMK 374
Query: 459 SMQTHKGSVFAVFLE--GKWLFTGGWDKTVSVQE 490
++ H+ V ++ ++ TG D+TV V E
Sbjct: 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 115/268 (42%), Gaps = 26/268 (9%)
Query: 157 NVWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKERLETEDKDELLGAEN 216
+V+K EL + E DK ++AG LE + ++ L K+ +E E K E
Sbjct: 29 SVFKKEAELDMNEELDK--KYAGL--LEKKWTSVIR-----LQKKVMELESKLNEAKEEF 79
Query: 217 SDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVGGGF--LFSSSFDKSI 274
+ G + Q R D + + K+ L GHR VT + F + S+S D +I
Sbjct: 80 TSGGPLGQKR------DPKEWIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATI 132
Query: 275 HVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
VW + T KGH V + + D L S + I +W F G E ++
Sbjct: 133 KVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCSADMTIKLWDFQ---GFECIRTM 188
Query: 335 NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG- 393
+ D S + ++ +G ++ + S D+TIK W + G T +GH+ V +
Sbjct: 189 HGH-DHNVSSV-SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246
Query: 394 -VLYSGSRDGTIRLWSLSDHSLLTVLEE 420
++ S S D T+R+W ++ L E
Sbjct: 247 TLIASCSNDQTVRVWVVATKECKAELRE 274
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 355 LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDH 412
+ + S D TIK W G T+ GH +V ++ + +L S S D TI+LW
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 413 SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
+ + VSSV + H + S + +IK+W
Sbjct: 183 ECIRTMHGHDHN-VSSVSIMPNGDHIVSASRDK-TIKMW 219
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 129/337 (38%), Gaps = 81/337 (24%)
Query: 114 MYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR---ELIIKPE 170
+ ++++E + ++L+N + +FV + R +T+V C++ +I
Sbjct: 91 LRLSFLENI-FILKNWYNPKFVPQRTTL----------RGHMTSVITCLQFEDNYVITGA 139
Query: 171 FDKMIRFAGPVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGG 230
DKMIR +N K LL DG A GG
Sbjct: 140 DDKMIRVYDSIN-------------------------KKFLLQLSGHDGGVWALKYAHGG 174
Query: 231 VKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAV----GGGFLFSSSFDKSIHVW 277
+ LV+G + V+ D+ +GH V L + ++ + S D ++HVW
Sbjct: 175 I--LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 278 SLKDFSHVHTFKGHDHKVMAVVYVDEDQP---------------------LCISGDSGGG 316
L S V G +H V + E+ P + +SG
Sbjct: 233 KLPKESSVPD-HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 291
Query: 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC 376
+ VW + + L + D YS I+ + + S D TI+ W L +G L
Sbjct: 292 LIVWDVA---QMKCLYILSGHTDRIYSTIY--DHERKRCISASMDTTIRIWDLENGELMY 346
Query: 377 TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHS 413
T+ GH + V L + + L S + DG+IR W +D+S
Sbjct: 347 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 30/243 (12%)
Query: 248 LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD-EDQ 305
L GH V L GG L S S D+++ VW +K H F+GH+ V + V+ ++
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
++G + VW + EE D Y + Y + G
Sbjct: 218 KYIVTGSRDNTLHVWKLP---KESSVPDHGEEHD--YPLVFHTPEENPY-FVG------- 264
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA 425
+ GH ++V T++ ++ SGS D T+ +W ++ L +L +
Sbjct: 265 -----------VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313
Query: 426 VSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWD 483
S++ + + + +I++W N + M ++Q H V + L K+L + D
Sbjct: 314 YSTIYD--HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 484 KTV 486
++
Sbjct: 372 GSI 374
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 34/180 (18%)
Query: 343 SGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN-GVLYSGSRD 401
S I L Y+ TG+ D+ I+ + ++ +SGH V L + G+L SGS D
Sbjct: 123 SVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 182
Query: 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT----LVVSHESGSIKVWR----- 452
T+R+W + V E G S+V L V++ +V ++ VW+
Sbjct: 183 RTVRVWDIKKGCCTHVFE----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 453 --------------------NDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELA 492
N F+ ++ H SV V G + +G +D T+ V ++A
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 298
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
LQGH V L + FL S++ D SI W D+S ++ + + YV ++ +
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--I 405
Query: 308 CISG 311
+SG
Sbjct: 406 LVSG 409
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 240 KGNVKFKDLQGH----RDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV 295
K V + +GH +DC L G + S+S+DK++ +W + F GH V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCT--LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWS-----FSFPLGHEPLKKWNEEKDW----RYSGIH 346
+ V +D+ ISG I VW+ + LGH DW R
Sbjct: 111 XS-VDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHN---------DWVSQVRVVPNE 160
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL-AVCNGVLY-SGSRDGTI 404
+ + D+ +KAW+L + GH S ++TL A +G L S +DG I
Sbjct: 161 KADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 405 RLWSLS 410
LW+L+
Sbjct: 221 XLWNLA 226
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 58/181 (32%)
Query: 248 LQGHRDCVTGLAVGGG---FLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVV 299
L+GH VT LA G L S+S DK++ W L V +FKGH H V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359
LT G Y + S
Sbjct: 73 ------------------------------------------------LTADGAYALSAS 84
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTV 417
D+T++ W + G GHKS V ++ + + SGSRD TI++W++ L T+
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATL 144
Query: 418 L 418
L
Sbjct: 145 L 145
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 48/166 (28%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH V ++ G + S S+D ++ VW + ++ GH ++ + +Y D ++
Sbjct: 266 LRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY-DHERKR 324
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367
CIS S D TI+ W
Sbjct: 325 CISA-----------------------------------------------SXDTTIRIW 337
Query: 368 SLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHS 413
L +G L T+ GH + V L + + L S + DG+IR W +D+S
Sbjct: 338 DLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 30/243 (12%)
Query: 248 LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD-EDQ 305
L GH V L GG L S S D+++ VW +K H F+GH+ V + V+ ++
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
++G + VW + EE D Y + Y + G
Sbjct: 218 KYIVTGSRDNTLHVWKLP---KESSVPDHGEEHD--YPLVFHTPEENPY-FVG------- 264
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA 425
+ GH ++V T++ ++ SGS D T+ +W ++ L +L +
Sbjct: 265 -----------VLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRI 313
Query: 426 VSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWD 483
S++ + + + +I++W N + ++Q H V + L K+L + D
Sbjct: 314 YSTIYD--HERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 484 KTV 486
++
Sbjct: 372 GSI 374
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 34/180 (18%)
Query: 343 SGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN-GVLYSGSRD 401
S I L Y+ TG+ D+ I+ + ++ +SGH V L + G+L SGS D
Sbjct: 123 SVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 182
Query: 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT----LVVSHESGSIKVWR----- 452
T+R+W + V E G S+V L V++ +V ++ VW+
Sbjct: 183 RTVRVWDIKKGCCTHVFE----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 453 --------------------NDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELA 492
N F+ ++ H SV V G + +G +D T+ V ++A
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVA 298
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
LQGH V L + FL S++ D SI W D+S ++ + + YV ++ +
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--I 405
Query: 308 CISG 311
+SG
Sbjct: 406 LVSG 409
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 243 VKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300
+ + L+GH V+ + + G F S S+D ++ +W L + F GH V++V +
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 301 VDEDQPLCISGDSGGGIFVWSF----SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY 356
+++ + +SG I +W+ + + E +W S + S +
Sbjct: 114 SSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------VSCVRFSPNSSNPII 165
Query: 357 TGSG-DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVL-YSGSRDGTIRLWSLSDHS 413
G D+ +K W+L + L GH ++T+ V +G L SG +DG LW L++
Sbjct: 166 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Query: 414 LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
L L+ G + + L + ++ L + SIK+W
Sbjct: 226 HLYTLD---GGDIINALCFSPNRYWLCAA-TGPSIKIW 259
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 7/212 (3%)
Query: 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH 346
T KGH+ V + + + +S I +W + + + + +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404
+++ G++ +GS D T++ W L GT + GH V ++A N + SGSRD TI
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWR--NDKFMKSMQ 461
+LW+ TV +E S VS V + ++VS +KVW N K +
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 462 THKG--SVFAVFLEGKWLFTGGWDKTVSVQEL 491
H G + V +G +GG D + +L
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 113/267 (42%), Gaps = 33/267 (12%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321
G FL + + D+ I +W +++ V +GH+ + ++ Y L +SG + +W
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWD 193
Query: 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTS---GRYLYTGSGDRTIKAWSLLDGTL---- 374
G L E+ G+ + S G+Y+ GS DR ++ W G L
Sbjct: 194 LR--TGQCSLTLSIED------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 375 ---SCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429
+ + +GHK +V ++ + SGS D +++LW+L + + + DS S
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN----NKSDSKTPNSGT 301
Query: 430 LSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWL--FTGGWDKTVS 487
+T + H V S+ +ND+++ S +G +F G L G + +S
Sbjct: 302 CEVTYIGHKDFVL----SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357
Query: 488 VQELAGDEF--EEDVIPTGAIPCGSVI 512
V G E +V TG+ C + I
Sbjct: 358 VAVANGSSLGPEYNVFATGSGDCKARI 384
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 253 DCVTGLAVGGG---FLFSSSFDKSIHVW-SLKDF------SHVHTFKGHDHKVMAVVYVD 302
D VT +AV G ++ + S D+++ VW S F S + GH V +VV+
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE---------EKDWRYSGIHALTTSGR 353
+ Q + +SG + +W+ K N KD+ S A T +
Sbjct: 267 DGQSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS--VATTQNDE 323
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG--------VLYSGSRDGTIR 405
Y+ +GS DR + W G + GH+++V ++AV NG V +GS D R
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383
Query: 406 LW 407
+W
Sbjct: 384 IW 385
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 17/166 (10%)
Query: 348 LTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV--CNGVLYSGSRDGTIR 405
+ G++L TG+ DR I+ W + + + + GH+ + +L L SGS D T+R
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 406 LWSL-SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW---------RNDK 455
+W L + LT+ ED V++V + +++VW R D
Sbjct: 191 IWDLRTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 456 FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499
+S HK SV++V +G+ + +G D++V + L + D
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 243 VKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300
+ + L+GH V+ + + G F S S+D ++ +W L + F GH V++V +
Sbjct: 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Query: 301 VDEDQPLCISGDSGGGIFVWSF----SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY 356
+++ + +SG I +W+ + + E +W S + S +
Sbjct: 137 SSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------VSCVRFSPNSSNPII 188
Query: 357 TGSG-DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVL-YSGSRDGTIRLWSLSDHS 413
G D+ +K W+L + L GH ++T+ V +G L SG +DG LW L++
Sbjct: 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Query: 414 LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
L L+ G + + L + ++ L + SIK+W
Sbjct: 249 HLYTLD---GGDIINALCFSPNRYWLCAA-TGPSIKIW 282
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 7/212 (3%)
Query: 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH 346
T KGH+ V + + + +S I +W + + + + +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404
+++ G++ +GS D T++ W L GT + GH V ++A N + SGSRD TI
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWR--NDKFMKSMQ 461
+LW+ TV +E S VS V + ++VS +KVW N K +
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 462 THKG--SVFAVFLEGKWLFTGGWDKTVSVQEL 491
H G + V +G +GG D + +L
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 46/251 (18%)
Query: 229 GGVKDLVNGL----SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSH 284
GG +NG+ + G L GH+ V L+ G + S S+DK+ VW K+ S
Sbjct: 77 GGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW--KEGSL 134
Query: 285 VHTFKGHDHKV--MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR- 341
V+ + H+ V VV E++ L S D + +K W +K +
Sbjct: 135 VYNLQAHNASVWDAKVVSFSENKFLTASAD----------------KTIKLWQNDKVIKT 178
Query: 342 YSGIH-------ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG 393
+SGIH A+ G ++ + S D IK G + T GH+S V + + NG
Sbjct: 179 FSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG 237
Query: 394 VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453
+ S D T+R+WS +G++ V++L A+ V +G I V +
Sbjct: 238 DIVSCGEDRTVRIWS------------KENGSLKQVITLPAISIWSVDCXSNGDIIVGSS 285
Query: 454 DKFMKSMQTHK 464
D ++ K
Sbjct: 286 DNLVRIFSQEK 296
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 15/179 (8%)
Query: 374 LSCTMSGHKSAVSTLAVCN-GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432
LS T+ GH V + + + S SRDGT+RLWS D L TV+ G ++SV
Sbjct: 10 LSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYD 68
Query: 433 TAVQHTLVVSHESG----SIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSV 488
+ + L ++ + + + ++ H+G+V ++ + + +G WDKT V
Sbjct: 69 SEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKV 128
Query: 489 QELAGDEFEEDVIPTGAIPCGSVITALL--YWQGKLFVGCADRTVKIALCNRQIPEIFS 545
+ E ++ SV A + + + K AD+T+K+ N ++ + FS
Sbjct: 129 WK------EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL-WQNDKVIKTFS 180
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 25/183 (13%)
Query: 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-------FPLGHEPLKK--WNEE 337
T KGHD V VV VD+ + +S D G + +WS G L ++ E
Sbjct: 13 TLKGHDQDVRDVVAVDDSKVASVSRD--GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE 70
Query: 338 KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYS 397
K+ G +G L+ SG+ + T+ GH+ V +L+ +GV+ S
Sbjct: 71 KELLLFGGKDTXINGVPLFATSGEDPLY-----------TLIGHQGNVCSLSFQDGVVIS 119
Query: 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM 457
GS D T ++W + SL+ L+ ++ +V ++ ++ + + +IK+W+NDK +
Sbjct: 120 GSWDKTAKVW--KEGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQNDKVI 176
Query: 458 KSM 460
K+
Sbjct: 177 KTF 179
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 36/273 (13%)
Query: 288 FKGHDHKVMAVVY-----VDEDQPLCISGDSGGGIFVWSF-------SFPLGHEPLKKWN 335
+GH V ++V +ED P+ ISG + +W F + H+ L N
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 336 EEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG 393
+ AL+ + + S D+T++ W L GT GH+S V ++A N
Sbjct: 77 -----HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 394 VLYSGSRDGTIRLWS-LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES------- 445
+ S + I+LW+ L + + +E+ S VS V ++ V +
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 446 --GSIKVWR-NDKFMKSMQTHKGSV--FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDV 500
G +KVW N + + + H+ +V ++ GK++ TGG DK + + ++ + +
Sbjct: 192 WDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251
Query: 501 IPTGAIPCGSVITALLYWQGKLFVGCADRTVKI 533
G+ L W + VG D+ VKI
Sbjct: 252 FDAGSTINQIAFNPKLQW---VAVGT-DQGVKI 280
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 15/179 (8%)
Query: 243 VKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300
+ K L GH V+ LA+ F SSS+DK++ +W L+ + F GH +V +V +
Sbjct: 67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW----RYSGI----HALTTSG 352
+++ + +S + I +W+ +K N DW RYS I + +
Sbjct: 127 SPDNRQI-LSAGAEREIKLWNILGECKFSSAEKENHS-DWVSCVRYSPIMKSANKVQPFA 184
Query: 353 RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLY--SGSRDGTIRLWSL 409
Y + D +K W+ + + T H+S V+ L++ Y +G +D + +W +
Sbjct: 185 PYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 6/149 (4%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321
G S DK VW ++ V F+ H+ V +V Y D
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL--- 266
Query: 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH 381
+ E E + S + + SGR L+ G D TI W +L G+ + GH
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVD-FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 382 KSAVSTLAVC-NGVLY-SGSRDGTIRLWS 408
++ VSTL V +G + SGS D T+R+W+
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 10/150 (6%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV--CNGVLYSGSRDGTI 404
A + +G +G D+ W + G H+S V+++ SGS D T
Sbjct: 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264
Query: 405 RLWSLSDHSLLTVLEEDSS--GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM-- 460
RL+ L + + ++S GA S SL+ L + +I VW K +
Sbjct: 265 RLYDLRADREVAIYSKESIIFGASSVDFSLSG--RLLFAGYNDYTINVWDVLKGSRVSIL 322
Query: 461 --QTHKGSVFAVFLEGKWLFTGGWDKTVSV 488
++ S V +G +G WD T+ V
Sbjct: 323 FGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 33/266 (12%)
Query: 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW-SFSFPLGHEPLKKWNEEKDWRYSGI 345
T KGH +KV+ + + +D+ +S G + VW SF+ H W +
Sbjct: 59 TLKGHGNKVLCMDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT----WVMACA 113
Query: 346 HALTTSGRYLYTGSGDRTIKAWSL-LDGTLSCTMSGHKSAVST----LAVCNGV-----L 395
+A SG + G D + L D + M+ K +V+ L+ C+ +
Sbjct: 114 YA--PSGCAIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVAMHTNYLSACSFTNSDMQI 169
Query: 396 YSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RN 453
+ S DGT LW + LL + + L+ + +T V VW R+
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 454 DKFMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTVSVQELAGDE----FEEDVIPTGAIP 507
+ +++ +TH+ V +V + G +G D T + +L D + ++ I GA
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289
Query: 508 CGSVITALLYWQGKLFVGCADRTVKI 533
++ L LF G D T+ +
Sbjct: 290 VDFSLSGRL-----LFAGYNDYTINV 310
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVW--SLKDFSHVHTFKGHDHKVMAVVYVDED 304
+GH+ V +A G +L S+SFD + +W + DF V T +GH+++V +V +
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE-KDWRYSGIHALTTSGRYLYTGSGDRT 363
L + ++VW +E + N +D ++ H S L + S D T
Sbjct: 118 N-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---SQELLASASYDDT 173
Query: 364 IKAWSLLDGTLSC--TMSGHKSAVSTLAV--CNGVLYSGSRDGTIRLW 407
+K + + C T+ GH+S V +LA L S S D T+R+W
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 351 SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLW 407
SG L + S D +K WS+ DG+ T+ GH++ V+ +A+ + + S S DGTIRLW
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 196 SCLPKERLETED-------KDELLGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDL 248
S L K RL+ D +D + +D +D A+ ++ + G ++G++K D
Sbjct: 66 SHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQ--MRRFILGTTEGDIKVLDS 123
Query: 249 ---------QGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA 297
Q H +T L G L SSS D + +WS+KD S+ T GH V
Sbjct: 124 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 183
Query: 298 VVYVDEDQPLCISGDSGGGIFVW 320
+ +D + + +S G I +W
Sbjct: 184 IAIIDRGRNV-LSASLDGTIRLW 205
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 246 KDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTF----KGHDHKVMAVV 299
+ L GHR VT +A+ G + S+S D +I +W + +HTF HD +
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
Query: 300 YVDEDQPL 307
+V D+ L
Sbjct: 232 FVGTDRQL 239
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 351 SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLW 407
SG L + S D +K WS+ DG+ T+ GH++ V+ +A+ + VL S S DGTIRLW
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLW 208
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 196 SCLPKERLETED-------KDELLGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDL 248
S L K RL+ D +D + +D +D A+ ++ + G ++G++K D
Sbjct: 69 SHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQ--MRRFILGTTEGDIKVLDS 126
Query: 249 ---------QGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA 297
Q H +T L G L SSS D + +WS+KD S+ T GH V
Sbjct: 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186
Query: 298 VVYVDEDQPLCISGDSGGGIFVW 320
+ +D + + +S G I +W
Sbjct: 187 IAIIDRGRNV-LSASLDGTIRLW 208
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 246 KDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTF----KGHDHKVMAVV 299
+ L GHR VT +A+ G + S+S D +I +W + +HTF HD +
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
Query: 300 YVDEDQPL 307
+V D+ L
Sbjct: 235 FVGTDRQL 242
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 250 GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH-VHTFKGHDHKVMAVVYVDEDQ 305
GH V L++ S S D ++ +W L+ S V T+ GH+ + +V + + Q
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-----SGRYLYTGSG 360
D G F GH+ L+ +N E D + + +T+ SGR L+ G
Sbjct: 263 RFGTGSDDGTCRL---FDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318
Query: 361 DRTIKAWSLLDG----TLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDH 412
+ W L L + H+ +S L + + L +GS D +++W+ S H
Sbjct: 319 NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 12/196 (6%)
Query: 246 KDLQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+ LQGH V L ++ S+S D + VW+ H K H VM +
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 304 DQPLCISG-DSGGGIFVWSFSFPL-GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361
Q + G DS IF S G+ P+ + S + L TGSGD
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 362 RTIKAWSLLDGTL-----SCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHS 413
+T W + G S SGH + V +L++ + + SGS D T+RLW L S
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 414 LLTVLEEDSSGAVSSV 429
G ++SV
Sbjct: 240 RAVRTYHGHEGDINSV 255
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 41/235 (17%)
Query: 288 FKGHDHKVMAVVYVDEDQPLCISGD-----------SGGGIFVWSFSFPLGHEPLKKWNE 336
GH + YV + + I+G +G I ++ FP GH
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT------- 205
Query: 337 EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC-TMSGHKSAVSTLAV-CNGV 394
D I++L + +GS D T++ W L + + T GH+ ++++ +G
Sbjct: 206 -ADVLSLSINSL--NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 395 LY-SGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT-----LVVSHESGSI 448
+ +GS DGT RL+ + L V + + + +T+V + L + +G
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322
Query: 449 KVWRNDKFMKSM--------QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493
VW D + M +H+G + + L +G L TG WDK + + +G
Sbjct: 323 YVW--DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 44/226 (19%)
Query: 348 LTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG-------------- 393
++ R++YTG G +K W + + G+KS VS L N
Sbjct: 59 ISNPTRHVYTG-GKGCVKVWDI-------SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC 110
Query: 394 VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW-- 451
L G T+ +W L+ + E SS L+++ G+I VW
Sbjct: 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170
Query: 452 RNDKFMKSMQTHK--GSVFAVFLEGKWLFTGGWDKTVSV------QELAGDEFEEDVIPT 503
N ++ Q H S + +G L+TGG D TV ++L +F +
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
Query: 504 GAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLLH 549
G P G W L VG V++ N+ P+ + L LH
Sbjct: 231 GYCPTGE-------W---LAVGMESSNVEVLHVNK--PDKYQLHLH 264
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTI 404
A++ + ++ D I W L + TL GH S + + N L++G D T+
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK-SMQTH 463
R W L + L + D + + S L L V ES +++V +K K + H
Sbjct: 208 RSWDLREGRQLQ--QHDFTSQIFS-LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH 264
Query: 464 KGSVFAVFLE--GKWLFTGGWDK 484
+ V ++ GKW + G D
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDN 287
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 30/203 (14%)
Query: 224 QARAAGGVKDL----VNGLSKGNVKFKDLQGHRDCV--TGLAVGGGFLFSSSFDKSIHVW 277
QA+ G L +N + N+ ++ H D V + G + S DK++ V+
Sbjct: 590 QAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 649
Query: 278 SLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG--------DSGGGIFVWSFSFPLGHE 329
+ + K H+ +V+ + +D + DS G V ++
Sbjct: 650 KAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY------- 702
Query: 330 PLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVS-- 386
+E + + H S L TGS D +K W L TM GH ++V+
Sbjct: 703 ------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 387 TLAVCNGVLYSGSRDGTIRLWSL 409
+ + +L S S DGT+RLW +
Sbjct: 757 RFSPDDELLASCSADGTLRLWDV 779
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 20/183 (10%)
Query: 241 GNVKFKDLQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
N F GH+ V + G L SSS D I VW+ + +V + H V
Sbjct: 999 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDF 1057
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR-YSGIH---ALTTSGRY 354
+ + + L S D G + VW+ + E+D+ + G A+++
Sbjct: 1058 RLLQDSRLLSWSFD--GTVKVWN---------VITGRIERDFTCHQGTVLSCAISSDATK 1106
Query: 355 LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV--STLAVCNGVLYSGSRDGTIRLWSLSDH 412
+ S D+T K WS + + GH V S ++ +L +G +G IR+W++SD
Sbjct: 1107 FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166
Query: 413 SLL 415
LL
Sbjct: 1167 QLL 1169
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 30/203 (14%)
Query: 224 QARAAGGVKDL----VNGLSKGNVKFKDLQGHRDCV--TGLAVGGGFLFSSSFDKSIHVW 277
QA+ G L +N + N+ ++ H D V + G + S DK++ V+
Sbjct: 583 QAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 642
Query: 278 SLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG--------DSGGGIFVWSFSFPLGHE 329
+ + K H+ +V+ + +D + DS G V ++
Sbjct: 643 KAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY------- 695
Query: 330 PLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVS-- 386
+E + + H S L TGS D +K W L TM GH ++V+
Sbjct: 696 ------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 387 TLAVCNGVLYSGSRDGTIRLWSL 409
+ + +L S S DGT+RLW +
Sbjct: 750 RFSPDDELLASCSADGTLRLWDV 772
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 20/183 (10%)
Query: 241 GNVKFKDLQGHRDCVTGL--AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
N F GH+ V + G L SSS D I VW+ + +V + H V
Sbjct: 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDF 1050
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR-YSGIH---ALTTSGRY 354
+ + + L S D G + VW+ + E+D+ + G A+++
Sbjct: 1051 RLLQDSRLLSWSFD--GTVKVWN---------VITGRIERDFTCHQGTVLSCAISSDATK 1099
Query: 355 LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV--STLAVCNGVLYSGSRDGTIRLWSLSDH 412
+ S D+T K WS + + GH V S ++ +L +G +G IR+W++SD
Sbjct: 1100 FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159
Query: 413 SLL 415
LL
Sbjct: 1160 QLL 1162
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 6/153 (3%)
Query: 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317
LA S + D S +W +++ TF GH+ + A+ + D
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377
F E + ++ + + + + SGR L G D W L +
Sbjct: 252 L---FDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 378 MSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWS 408
++GH + VS L V + + +GS D +++W+
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 103/264 (39%), Gaps = 70/264 (26%)
Query: 240 KGNVKF-KDLQGHRDCVTGLAVGGGFL-----FSSSFDKSIHVWSLKDFSHVHTFKGHDH 293
+GNV+ ++L GH TG FL +SS D + +W ++ TF GH
Sbjct: 130 EGNVRVSRELAGH----TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
VM++ +L R
Sbjct: 186 DVMSL------------------------------------------------SLAPDTR 197
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLY-SGSRDGTIRLWSL 409
+G+ D + K W + +G T +GH+S ++ A+C NG + +GS D T RL+ L
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRLFDL 255
Query: 410 -SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK----SMQTHK 464
+D L+T ++ ++SV S + L+ ++ + VW K + + ++
Sbjct: 256 RADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 465 GSVFAVFLEGKWLFTGGWDKTVSV 488
S V +G + TG WD + +
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 6/153 (3%)
Query: 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317
LA S + D S +W +++ TF GH+ + A+ + D
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377
F E + ++ + + + + SGR L G D W L +
Sbjct: 252 L---FDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 378 MSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWS 408
++GH + VS L V + + +GS D +++W+
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 103/264 (39%), Gaps = 70/264 (26%)
Query: 240 KGNVKF-KDLQGHRDCVTGLAVGGGFL-----FSSSFDKSIHVWSLKDFSHVHTFKGHDH 293
+GNV+ ++L GH TG FL +SS D + +W ++ TF GH
Sbjct: 130 EGNVRVSRELAGH----TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
VM++ +L R
Sbjct: 186 DVMSL------------------------------------------------SLAPDTR 197
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLY-SGSRDGTIRLWSL 409
+G+ D + K W + +G T +GH+S ++ A+C NG + +GS D T RL+ L
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRLFDL 255
Query: 410 -SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK----SMQTHK 464
+D L+T ++ ++SV S + L+ ++ + VW K + + ++
Sbjct: 256 RADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 465 GSVFAVFLEGKWLFTGGWDKTVSV 488
S V +G + TG WD + +
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 298 VVYVDEDQPLCISGDSGGGIFVWSFS--FPLG-----HEPLKKWNEEKDWRYSGIHALTT 350
V +VD+D+ I G G IFV+ + P G H P+ +
Sbjct: 212 VEWVDDDK-FVIPGPKGA-IFVYQITEKTPTGKLIGHHGPIS------------VLEFND 257
Query: 351 SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH-KSAVSTLAVCNGVLYSGSRDGTIRLWSL 409
+ + L + S D T++ W +G GH +S VS V + + S S DG++RLWSL
Sbjct: 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSL 317
Query: 410 SDHSLLTV 417
++LL +
Sbjct: 318 KQNTLLAL 325
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 264 FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322
L S+S D ++ +W + + + F GH +++ +V +D+ + S D G + +WS
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMD--GSVRLWSL 317
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 6/153 (3%)
Query: 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317
LA S + D S +W +++ TF GH+ + A+ + D
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377
F E + ++ + + + + SGR L G D W L +
Sbjct: 263 L---FDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGV 318
Query: 378 MSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWS 408
++GH + VS L V + + +GS D +++W+
Sbjct: 319 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 103/264 (39%), Gaps = 70/264 (26%)
Query: 240 KGNVKF-KDLQGHRDCVTGLAVGGGFL-----FSSSFDKSIHVWSLKDFSHVHTFKGHDH 293
+GNV+ ++L GH TG FL +SS D + +W ++ TF GH
Sbjct: 141 EGNVRVSRELAGH----TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 196
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
VM++ +L R
Sbjct: 197 DVMSL------------------------------------------------SLAPDTR 208
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLY-SGSRDGTIRLWSL 409
+G+ D + K W + +G T +GH+S ++ A+C NG + +GS D T RL+ L
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRLFDL 266
Query: 410 -SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK----SMQTHK 464
+D L+T ++ ++SV S + L+ ++ + VW K + + ++
Sbjct: 267 RADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 325
Query: 465 GSVFAVFLEGKWLFTGGWDKTVSV 488
S V +G + TG WD + +
Sbjct: 326 VSCLGVTDDGMAVATGSWDSFLKI 349
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 6/153 (3%)
Query: 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317
LA S + D S +W +++ TF GH+ + A+ + D
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377
F E + ++ + + + + SGR L G D W L +
Sbjct: 252 L---FDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 378 MSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWS 408
++GH + VS L V + + +GS D +++W+
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 103/264 (39%), Gaps = 70/264 (26%)
Query: 240 KGNVKF-KDLQGHRDCVTGLAVGGGFL-----FSSSFDKSIHVWSLKDFSHVHTFKGHDH 293
+GNV+ ++L GH TG FL +SS D + +W ++ TF GH
Sbjct: 130 EGNVRVSRELAGH----TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
VM++ +L R
Sbjct: 186 DVMSL------------------------------------------------SLAPDTR 197
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLY-SGSRDGTIRLWSL 409
+G+ D + K W + +G T +GH+S ++ A+C NG + +GS D T RL+ L
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRLFDL 255
Query: 410 -SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK----SMQTHK 464
+D L+T ++ ++SV S + L+ ++ + VW K + + ++
Sbjct: 256 RADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 465 GSVFAVFLEGKWLFTGGWDKTVSV 488
S V +G + TG WD + +
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 6/153 (3%)
Query: 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317
LA S + D S +W +++ TF GH+ + A+ + D
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377
F E + ++ + + + + SGR L G D W L +
Sbjct: 252 L---FDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 378 MSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWS 408
++GH + VS L V + + +GS D +++W+
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 103/264 (39%), Gaps = 70/264 (26%)
Query: 240 KGNVKF-KDLQGHRDCVTGLAVGGGFL-----FSSSFDKSIHVWSLKDFSHVHTFKGHDH 293
+GNV+ ++L GH TG FL +SS D + +W ++ TF GH
Sbjct: 130 EGNVRVSRELAGH----TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
VM++ +L R
Sbjct: 186 DVMSL------------------------------------------------SLAPDTR 197
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLY-SGSRDGTIRLWSL 409
+G+ D + K W + +G T +GH+S ++ A+C NG + +GS D T RL+ L
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNGNAFATGSDDATCRLFDL 255
Query: 410 -SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK----SMQTHK 464
+D L+T ++ ++SV S + L+ ++ + VW K + + ++
Sbjct: 256 RADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 465 GSVFAVFLEGKWLFTGGWDKTVSV 488
S V +G + TG WD + +
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 235 VNGLSKGNVKFKDLQGHRDCV--TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD 292
+N + N+ ++ H D V + G + S DK++ V+ + + K H+
Sbjct: 604 INKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHE 663
Query: 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG 352
+V+ + +D+ + + +W+ + E + ++E + + + H +S
Sbjct: 664 DEVLCCAFSTDDR-FIATCSVDKKVKIWN---SMTGELVHTYDEHSE-QVNCCHFTNSSH 718
Query: 353 RYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVS--TLAVCNGVLYSGSRDGTIRLW 407
L TGS D +K W L TM GH ++V+ + + +L S S DGT++LW
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 265 LFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324
L SSS D I VW+ + +GH V + + L S D G + VW+
Sbjct: 1024 LISSSDDAEIQVWNWQ-LDKCIFLRGHQETVKDFRLLKNSRLLSWSFD--GTVKVWN--- 1077
Query: 325 PLGHEPLKKWNEEKDWRYSGIHALTTS----GRYLYTGSGDRTIKAWSLLDGTLSCTMSG 380
+ N+EKD+ L+ + S D+T K WS + G
Sbjct: 1078 ------IITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRG 1131
Query: 381 HKSAV--STLAVCNGVLYSGSRDGTIRLWSLSDHSLL 415
H V S +V + +L +G +G IR+W++S+ LL
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317
LA GGG + DK IH W+ + V+T + + + G +
Sbjct: 275 LATGGG-----TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG 372
+WS+S + + + YS AL+ GR L T + D +K W + DG
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYS---ALSPDGRILSTAASDENLKFWRVYDG 381
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 352 GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTI 404
G +L G G+ + + + T TM+GH++ V L+ VL SGSR G I
Sbjct: 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAI 198
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 370 LDGTLSC----------TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLS----DHSLL 415
LDGTL+ T+SGH ++ L V L SGS DG I WS S DHS L
Sbjct: 317 LDGTLNFYELGHDEVLKTISGHNKGITALTV--NPLISGSYDGRIMEWSSSSMHQDHSNL 374
Query: 416 TV-LEEDSSGAVSSVLSLTAVQHTLVVSHESGS---IKVWRNDKF 456
V L+ + SS+ ++ + HE GS + ND F
Sbjct: 375 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 419
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317
+A G G + S S D +++ + L + T GH+ + A+ PL ISG G I
Sbjct: 305 VATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV----NPL-ISGSYDGRI 359
Query: 318 FVWSFS 323
WS S
Sbjct: 360 MEWSSS 365
>pdb|3PRW|A Chain A, Crystal Structure Of The Lipoprotein Bamb
Length = 377
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 277 WSLKDFSHVHTFKGHDHKVMA--VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
WS S + F + H +A VVY + L + ++ G +WS S
Sbjct: 33 WSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSL---------- 82
Query: 335 NEEKDWRYSGIHAL-----TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA 389
EKD +S AL T SG ++Y GS + A + DGT++ A+S
Sbjct: 83 -AEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV 141
Query: 390 VCNGVLYSGSRDGTIRLWSLSDHSL 414
V +G++ + +G ++ + +D ++
Sbjct: 142 VSDGLVLIHTSNGQLQALNEADGAV 166
>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P213
Length = 376
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 277 WSLKDFSHVHTFKGHDHKVMA--VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
WS S + F + H +A VVY + L + ++ G +WS S
Sbjct: 32 WSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLA--------- 82
Query: 335 NEEKDWRYSGIHAL-----TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA 389
EKD +S AL T SG ++Y GS + A + DGT++ A+S
Sbjct: 83 --EKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV 140
Query: 390 VCNGVLYSGSRDGTIRLWSLSDHSL 414
V +G++ + +G ++ + +D ++
Sbjct: 141 VSDGLVLIHTSNGQLQALNEADGAV 165
>pdb|3Q54|A Chain A, Crystal Structure Of Escherichia Coli Bamb
Length = 368
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 277 WSLKDFSHVHTFKGHDHKVMA--VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
WS S + F + H +A VVY + L + ++ G +WS S
Sbjct: 24 WSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLA--------- 74
Query: 335 NEEKDWRYSGIHAL-----TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA 389
EKD +S AL T SG ++Y GS + A + DGT++ A+S
Sbjct: 75 --EKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV 132
Query: 390 VCNGVLYSGSRDGTIRLWSLSDHSL 414
V +G++ + +G ++ + +D ++
Sbjct: 133 VSDGLVLIHTSNGQLQALNEADGAV 157
>pdb|2YH3|A Chain A, The Structure Of Bamb From E. Coli
Length = 379
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 277 WSLKDFSHVHTFKGHDHKVMA--VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
WS S + F + H +A VVY + L + ++ G +WS S
Sbjct: 27 WSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLA--------- 77
Query: 335 NEEKDWRYSGIHAL-----TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA 389
EKD +S AL T SG ++Y GS + A + DGT++ A+S
Sbjct: 78 --EKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV 135
Query: 390 VCNGVLYSGSRDGTIRLWSLSDHSL 414
V +G++ + +G ++ + +D ++
Sbjct: 136 VSDGLVLIHTSNGQLQALNEADGAV 160
>pdb|3P1L|A Chain A, Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein
Component Of The Beta-Barrel Assembly Machinery Complex,
Native Crystals
Length = 393
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 277 WSLKDFSHVHTFKGHDHKVMA--VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
WS S + F + H +A VVY + L + ++ G +WS S
Sbjct: 49 WSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSL---------- 98
Query: 335 NEEKDWRYSGIHAL-----TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA 389
EKD +S AL T SG ++Y GS + A + DGT++ A+S
Sbjct: 99 -AEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV 157
Query: 390 VCNGVLYSGSRDGTIRLWSLSDHSL 414
V +G++ + +G ++ + +D ++
Sbjct: 158 VSDGLVLIHTSNGQLQALNEADGAV 182
>pdb|3Q7M|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup I222
pdb|3Q7N|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P212121
Length = 376
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 277 WSLKDFSHVHTFKGHDHKVMA--VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
WS S + F + H +A VVY + L + ++ G +WS S
Sbjct: 32 WSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLA--------- 82
Query: 335 NEEKDWRYSGIHAL-----TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA 389
EKD +S AL T SG ++Y GS + A + DGT++ A+S
Sbjct: 83 --EKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV 140
Query: 390 VCNGVLYSGSRDGTIRLWSLSDHSL 414
V +G++ + +G ++ + +D ++
Sbjct: 141 VSDGLVLIHTSNGQLQALNEADGAV 165
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390
L +W E D++ + SGRY+ G + + A +++G +S + +K T
Sbjct: 386 LTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGA--IMNG-ISAFGANYKPYGGTF-- 440
Query: 391 CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
N V Y+ G +RL +LS H ++ V DS G + ++ TL +I+V
Sbjct: 441 LNFVSYAA---GAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIE-TLAHFRSLPNIQV 496
Query: 451 WR 452
WR
Sbjct: 497 WR 498
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390
L +W E D++ + SGRY+ G + + A +++G +S + +K T
Sbjct: 388 LTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGA--IMNG-ISAFGANYKPYGGTF-- 442
Query: 391 CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
N V Y+ G +RL +LS H ++ V DS G + ++ TL +I+V
Sbjct: 443 LNFVSYAA---GAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIE-TLAHFRSLPNIQV 498
Query: 451 WR 452
WR
Sbjct: 499 WR 500
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390
L +W E D++ + SGRY+ G + + A +++G +S + +K T
Sbjct: 388 LTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGA--IMNG-ISAFGANYKPYGGTF-- 442
Query: 391 CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
N V Y+ G +RL +LS H ++ V DS G + ++ TL +I+V
Sbjct: 443 LNFVSYAA---GAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIE-TLAHFRSLPNIQV 498
Query: 451 WR 452
WR
Sbjct: 499 WR 500
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 349 TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC----NGVLYSGSRDGTI 404
T G +L GS ++ W + D + + L VC +++ S D T
Sbjct: 51 TLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442
++W LS + + + + D+ V ++ + A ++ V++
Sbjct: 111 KMWDLSSNQAIQIAQHDA--PVKTIHWIKAPNYSCVMT 146
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 352 GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYS----GSRDGTIRLW 407
G ++T S D+T K W L + ++ H + V T+ YS GS D T++ W
Sbjct: 98 GSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Query: 408 SLSDHSLLTVLE 419
+ + VL+
Sbjct: 157 DTRSSNPMMVLQ 168
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 265 LFSSSFDKSIHVWSLKDFSHVHTF-----KGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319
L ++S + HV+ ++ F K H V V ++ +++ L ++ GG+ +
Sbjct: 227 LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL 286
Query: 320 WSFSFPL 326
W + +P+
Sbjct: 287 WKYEYPI 293
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSC-TMSGHKSAVSTLAVCNGV--------LYS 397
A + RYL TG + W+L + ++ GHK ++ + G+ + +
Sbjct: 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 398 GSRDGTIRLW 407
GSRDGT+++W
Sbjct: 135 GSRDGTVKVW 144
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 32/233 (13%)
Query: 236 NGLSKGNVKFKDLQGHRDCVTGLAVGGG------FLFSSSFDKSIHVWSLKD--FSHVHT 287
G ++ + FK Q H D + +A G + + S D + VW +D +
Sbjct: 16 QGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS 75
Query: 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE-------PLKKWNEEKDW 340
+GH + VV VD L I+ S + + G + P+ W
Sbjct: 76 LEGHQ---LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL---- 128
Query: 341 RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398
A + +YL TG+ + + + G ++ + ++A L SG
Sbjct: 129 ------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
+ DG I ++ ++ LL LE + S L+ + LV + + G IK++
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRS--LTFSPDSQLLVTASDDGYIKIY 233
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 350 TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG---VLYSGSRDGTIRL 406
+ G +G D ++K W L + + + H S V+ +A C G + S DG I L
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 407 WSLSDHSLLTVLEEDSSGAV-SSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQT 462
W T ++ +S + +SV T E+G++ + N K S QT
Sbjct: 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL-VNIKNPDSAQT 264
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 370 LDGTLSC----------TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSL----SDHSLL 415
LDGTL+ T+SGH ++ L V L SGS DG I WS DHS L
Sbjct: 317 LDGTLNFYELGHDEVLKTISGHNKGITALTV--NPLISGSYDGRIXEWSSSSXHQDHSNL 374
Query: 416 TV-LEEDSSGAVSSVLSLTAVQHTLVVSHESGS---IKVWRNDKF 456
V L+ + SS+ ++ + HE GS + ND F
Sbjct: 375 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 419
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 23/179 (12%)
Query: 247 DLQGHRDCVTGLA--VGGGFLFSSSFDKSIHVWSLKDFSHVHTFK--------GHDHKVM 296
D H+ + +A L + SFD ++ +W+ K+ S TF+ GH+++V
Sbjct: 53 DETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA-KEESADRTFEMDLLAIIEGHENEVK 111
Query: 297 AVVYVDEDQPLCISGDSGGGIFVWSFSFP-LGHEPLKKWNEE-KDWRYSGIHALTTSGRY 354
V + ++ L +++W +E + E +D ++ H S
Sbjct: 112 GVAWSNDGYYLATCS-RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP---SEAL 167
Query: 355 LYTGSGDRTIKAWSLLDGTLSCT--MSGHKSAV--STLAVCNGV--LYSGSRDGTIRLW 407
L + S D T++ W D C ++GH+ V S GV L SGS D T+R+W
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 236 NGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS-HVHTFKGHDHK 294
N SK + +C++ L + S DK++ +W L++ +H+F+ H +
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323
Query: 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFS 323
+ V + ++ + S + + VW S
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLS 352
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 50/248 (20%)
Query: 262 GGFLFSSSFDKSIHVWSLKD--FSHVHTFKGHDHKVMAVVYVDEDQ-PLCISGDSGGGIF 318
G L S S+D + +W ++ +S + H V +V + + PL + S G +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 319 VWSFSFPLGHEPL-----------KKWNE---EKDWRYSGIHALTTSGRYLYTGSGDRTI 364
V F P+ W E+D G H T R TG D +
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED----GEHNGTKESRKFVTGGADNLV 182
Query: 365 KAWSLLDGT----LSCTMSGHKSAVSTLA-----VCNGVLYSGSRDGTIRLWSLSDHS-- 413
K W L T+ GH V +A + L S S+D T +W+ +
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242
Query: 414 -LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL 472
T+L+E+ V S + + L +S + +W+ + L
Sbjct: 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN-----------------L 285
Query: 473 EGKWLFTG 480
EGKW G
Sbjct: 286 EGKWEPAG 293
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 236 NGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS-HVHTFKGHDHK 294
N SK + +C++ L + S DK++ +W L++ +H+F+ H +
Sbjct: 266 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 325
Query: 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFS 323
+ V + ++ + S + + VW S
Sbjct: 326 IFQVQWSPHNETILASSGTDRRLHVWDLS 354
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTI 404
A G YL G+ ++ W + M+ H + V +L+ + +L SGSR G I
Sbjct: 154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 211
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLK-DFSHVHTFKGHDHKVMAVVYVD 302
+ +++ H V L+ L S S IH ++ HV T GH +V + +
Sbjct: 181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240
Query: 303 EDQPLCISGDSGGGIFVW-SFSFPLGHEPLKKWNEEKD------WRYSGIHALTTSGRYL 355
+ + L SG + + VW S G PL+ + + + W + L T G
Sbjct: 241 DGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--- 296
Query: 356 YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL 388
G+ DR I+ W++ G + H S L
Sbjct: 297 --GTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTI 404
A G YL G+ ++ W + M+ H + V +L+ + +L SGSR G I
Sbjct: 165 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 222
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 23/222 (10%)
Query: 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLK-DFSHVHTFKGHDHKVMAVVYVD 302
+ +++ H V L+ L S S IH ++ HV T GH +V + +
Sbjct: 192 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 251
Query: 303 EDQPLCISGDSGGGIFVW-SFSFPLGHEPLKKWNEEKD------WRYSGIHALTTSGRYL 355
+ + L SG + + VW S G PL+ + + + W + L T G
Sbjct: 252 DGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--- 307
Query: 356 YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL-AVCNGVLYSGS--RDGTIRLWSLSDH 412
G+ DR I+ W++ G + H S L + L SG + +W
Sbjct: 308 --GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 365
Query: 413 SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG--SIKVWR 452
+ + L+ G S VLSLT V+ + ++++WR
Sbjct: 366 AKVAELK----GHTSRVLSLTMSPDGATVASAAADETLRLWR 403
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 236 NGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS-HVHTFKGHDHK 294
N SK + +C++ L + S DK++ +W L++ +H+F+ H +
Sbjct: 268 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 327
Query: 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFS 323
+ V + ++ + S + + VW S
Sbjct: 328 IFQVQWSPHNETILASSGTDRRLHVWDLS 356
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 253 DCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS-HVHTFKGHDHKVMAVVYVDEDQPLCISG 311
+C++ L + S DK++ +W L++ +HTF+ H ++ V + ++ + S
Sbjct: 279 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
Query: 312 DSGGGIFVWSFS 323
+ + VW S
Sbjct: 339 GTDRRLNVWDLS 350
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 253 DCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS-HVHTFKGHDHKVMAVVYVDEDQPLCISG 311
+C++ L + S DK++ +W L++ +HTF+ H ++ V + ++ + S
Sbjct: 279 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
Query: 312 DSGGGIFVWSFS 323
+ + VW S
Sbjct: 339 GTDRRLNVWDLS 350
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 16/142 (11%)
Query: 355 LYTGSGDRTIKAWSLLDGTL-------SCTMSGHKSAVSTLA---VCNGVLYSGSRDGTI 404
+ +GS D T+ W + DG L T+ GH V +A VL S D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK---FMKSMQ 461
+W + + + L D + + + S ++V K + +
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
Query: 462 THKGS--VFAVFL-EGKWLFTG 480
H+G+ V AVF+ EGK L TG
Sbjct: 217 PHEGTRPVHAVFVSEGKILTTG 238
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIR 405
A G YL G+ ++ W + M+ H + V +L+ + +L SGSR G I
Sbjct: 74 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH 132
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLK-DFSHVHTFKGHDHKVMAVVYVD 302
+ +++ H V L+ L S S IH ++ HV T GH +V + +
Sbjct: 101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160
Query: 303 EDQPLCISGDSGGGIFVW-SFSFPLGHEPLKKWNEEKD------WRYSGIHALTTSGRYL 355
+ + L SG + + VW S G PL+ + + + W + L T G
Sbjct: 161 DGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--- 216
Query: 356 YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL 388
G+ DR I+ W++ G + H S L
Sbjct: 217 --GTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 247
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 380 GHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEE 420
GH + V +A C + V+ SGS D T+ +W + D L+ L E
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE 122
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 16/142 (11%)
Query: 355 LYTGSGDRTIKAWSLLDGTL-------SCTMSGHKSAVSTLA---VCNGVLYSGSRDGTI 404
+ +GS D T+ W + DG L T+ GH V +A VL S D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK---FMKSMQ 461
+W + + + L D + + + S ++V K + +
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
Query: 462 THKGS--VFAVFL-EGKWLFTG 480
H+G+ V AVF+ EGK L TG
Sbjct: 217 PHEGTRPVHAVFVSEGKILTTG 238
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 236 NGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS-HVHTFKGHDHK 294
N SK + +C++ L + S DK++ +W L++ +H+F+ H +
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 319
Query: 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFS 323
+ V + ++ + S + + VW S
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLS 348
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 50/248 (20%)
Query: 262 GGFLFSSSFDKSIHVWSLKD--FSHVHTFKGHDHKVMAVVYVDEDQ-PLCISGDSGGGIF 318
G L S S+D + +W ++ +S + H V +V + + PL + S G +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 319 VWSFSFPLGHEPL-----------KKWNE---EKDWRYSGIHALTTSGRYLYTGSGDRTI 364
V F P+ W E+D G H T R TG D +
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED----GEHNGTKESRKFVTGGADNLV 184
Query: 365 KAWSLLDGT----LSCTMSGHKSAVSTLA-----VCNGVLYSGSRDGTIRLWSLSDHS-- 413
K W L T+ GH V +A + L S S+D T +W+ +
Sbjct: 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244
Query: 414 -LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL 472
T+L+E+ V S + + L +S + +W+ + L
Sbjct: 245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN-----------------L 287
Query: 473 EGKWLFTG 480
EGKW G
Sbjct: 288 EGKWEPAG 295
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 350 TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRL 406
+SG +GS D IK W L + + H + V+ +A + V S S D I L
Sbjct: 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 407 W 407
W
Sbjct: 197 W 197
>pdb|4ECF|A Chain A, Crystal Structure Of An Abc-Type Phosphate Transport
System, Periplasmic Component (Lvis_0633) From
Lactobacillus Brevis Atcc 367 At 1.55 A Resolution
Length = 264
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 384 AVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT 433
A ++ + N SG+R T + L++H T E+DSSG V S+++ T
Sbjct: 118 ADQSIVLINRAQGSGTR-ATFEQFGLANHRSKTAQEQDSSGXVRSIVATT 166
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGV--LYSGSRDGTIRLWSLSDHSLLTVLEE 420
TI +++ G + GH V + LYSGSRD I W SL + +
Sbjct: 315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP---SLYEPVPD 371
Query: 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK 458
D S L+ A + S E G W + +F K
Sbjct: 372 DDETTTKSQLN-PAFEDAWSSSDEEGGTSAWSHPQFEK 408
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 23 ICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSV---GYGSDVWPVACI 79
+ D+ L L+DF + F SP Y + W E F G G D+W V CI
Sbjct: 144 LLDENGVLKLADFGLAKSFGSPNRAYX-HQVVTRWYRAPELLFGARMYGVGVDMWAVGCI 202
Query: 80 LLSLLIGEQF 89
L LL+ F
Sbjct: 203 LAELLLRVPF 212
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 87/248 (35%), Gaps = 50/248 (20%)
Query: 262 GGFLFSSSFDKSIHVWSLKD--FSHVHTFKGHDHKVMAVVYVDEDQ-PLCISGDSGGGIF 318
G L S S+D + +W ++ +S + H V +V + + PL + S G +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 319 VWSFSFPLGHEPL-----------KKWNE---EKDWRYSGIHALTTSGRYLYTGSGDRTI 364
V F P+ W E+D G H T R TG D +
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED----GEHNGTKESRKFVTGGADNLV 182
Query: 365 KAWSLLDGT----LSCTMSGHKSAVSTLAVCNGVLY-----SGSRDGTIRLWSLSDHS-- 413
K W L T+ GH V +A VL S S+D T +W+ +
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242
Query: 414 -LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL 472
T+L+E+ V S + + L +S + +W+ + L
Sbjct: 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN-----------------L 285
Query: 473 EGKWLFTG 480
EGKW G
Sbjct: 286 EGKWEPAG 293
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 50/248 (20%)
Query: 262 GGFLFSSSFDKSIHVWSLKD--FSHVHTFKGHDHKVMAVVYVDEDQ-PLCISGDSGGGIF 318
G L S S+D + +W ++ +S + H V +V + + P+ + S G +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 319 VWSFSFPLGHEPL-----------KKWNE---EKDWRYSGIHALTTSGRYLYTGSGDRTI 364
V F P+ W E+D G H T R TG D +
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED----GEHNGTKESRKFVTGGADNLV 182
Query: 365 KAWSLLDGT----LSCTMSGHKSAVSTLAVCNGVLY-----SGSRDGTIRLWSLSDHS-- 413
K W L T+ GH V +A VL S S+D T +W+ +
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242
Query: 414 -LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL 472
T+L+E+ V S + + L +S + +W+ + L
Sbjct: 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN-----------------L 285
Query: 473 EGKWLFTG 480
EGKW G
Sbjct: 286 EGKWEPAG 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,481,551
Number of Sequences: 62578
Number of extensions: 776084
Number of successful extensions: 2762
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2102
Number of HSP's gapped (non-prelim): 262
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)