BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008821
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 186/519 (35%), Positives = 269/519 (51%), Gaps = 49/519 (9%)
Query: 41 IWPLPAQFSSGNDTLSVDP---ALCLSVSGKGS-GLKIVEEAFERYKAIIFEHEVEGVNS 96
+WP P F + + + P VS G +++EAF+RY+ ++F G S
Sbjct: 1 LWPWPQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLF-----GSGS 55
Query: 97 HSVFNNFRKRRSRGFDIGTLKIVVHSDNEELQLGVDESYTLLVAKNEGLSIIGEATIEAN 156
KR + ++ + +V N+ L E+YTL + ++ L + +
Sbjct: 56 WPRPYLTGKRHTLEKNVLVVSVVTPGCNQLPTLESVENYTLTINDDQCLLL-------SE 108
Query: 157 TVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIK 216
TV+GALRGLETFSQL + + + I+D PRF RGLL+DTSRHYLP+ I
Sbjct: 109 TVWGALRGLETFSQLV---WKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSIL 165
Query: 217 QIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWER-YTVEDAHEIVSFAK 274
++ M+Y KLNV HWH++D+ SFP E T+P L KG+Y+ YT +D E++ +A+
Sbjct: 166 DTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYAR 225
Query: 275 MRGINVMAEVDVPGHAESWGAGYPNLW-PSPSCRE------PLDVSKNFTFEVISGILSD 327
+RGI V+AE D PGH SWG G P L P S E P++ S N T+E +S +
Sbjct: 226 LRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLE 285
Query: 328 LRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTA--KEAYQYFVLTAQKIAISKN 385
+ +FP HLGGDEV+ CW S P ++ ++R K+ +++ T I S
Sbjct: 286 VSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYG 345
Query: 386 WTPVNWEETFNSFASNLNPRTVVHNWLGGGVCPKAVAK--------GFRCIYSNQGFWYL 437
V W+E F++ + P T++ W P K GFR + S WYL
Sbjct: 346 KGYVVWQEVFDN-KVKIQPDTIIQVWRED--IPVNYMKELELVTKAGFRALLSAP--WYL 400
Query: 438 DHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAE 495
+ + W + Y EPL P + LV+GGE CMWGE D +++ +WPRA A AE
Sbjct: 401 NRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAE 460
Query: 496 RLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAPV 534
RLWS + T ++T A RL +FRC L RRGVQA P+
Sbjct: 461 RLWSNK---LTSDLTF-AYERLSHFRCELLRRGVQAQPL 495
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 179/525 (34%), Positives = 263/525 (50%), Gaps = 55/525 (10%)
Query: 41 IWPLPAQFSSGNDTLSVDPA-LCLS---VSGKGSGLKIVEEAFERYKAIIF-----EHEV 91
+WPLP + L + P +S S G ++EEAF RY IF HE
Sbjct: 56 LWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP 115
Query: 92 EGVNSHSVFNNFRKRRSRGFDIGTLKIVVHSDNEEL-QLGVDESYTLLVAKNEGLSIIGE 150
+ + + I + S+ + + DESYTLLV +
Sbjct: 116 AEFQAKTQVQQL-----------LVSITLQSECDAFPNISSDESYTLLVKEPV------- 157
Query: 151 ATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209
A ++AN V+GALRGLETFSQL D Y T ++ I D PRF+ RG+LIDTSRHY
Sbjct: 158 AVLKANRVWGALRGLETFSQLVYQDSYGTFTI----NESTIIDSPRFSHRGILIDTSRHY 213
Query: 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268
LPV +I + +++M++ K NVLHWHI+D+QSFP + T+P L KG+YS YT D
Sbjct: 214 LPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM 273
Query: 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCRE-------PLDVSKNFTFEVI 321
++ +A++RGI V+ E D PGH SWG G +L R+ P++ + N T+ +
Sbjct: 274 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFL 333
Query: 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTA--KEAYQYFVLTAQK 379
+ ++ ++FP + HLGGDEV CW S P ++ ++R K+ +++
Sbjct: 334 TTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLD 393
Query: 380 IAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGGV---CPKAVAKGFRCIYSNQGFWY 436
I + N + W+E F+ A L P T+V W + A GF I S WY
Sbjct: 394 IIATINKGSIVWQEVFDDKA-KLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAP--WY 450
Query: 437 LDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAA 494
LD + W + Y EPL+ ++L +GGE C+WGE D +++ +WPRA+A
Sbjct: 451 LDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVG 510
Query: 495 ERLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAPVLNKYA 539
ERLWS ++ + A RL RC + RG+ A P+ Y
Sbjct: 511 ERLWSSKDVRDMDD----AYDRLTRHRCRMVERGIAAQPLYAGYC 551
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 179/525 (34%), Positives = 263/525 (50%), Gaps = 55/525 (10%)
Query: 41 IWPLPAQFSSGNDTLSVDPA-LCLS---VSGKGSGLKIVEEAFERYKAIIF-----EHEV 91
+WPLP + L + P +S S G ++EEAF RY IF HE
Sbjct: 7 LWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP 66
Query: 92 EGVNSHSVFNNFRKRRSRGFDIGTLKIVVHSDNEEL-QLGVDESYTLLVAKNEGLSIIGE 150
+ + + I + S+ + + DESYTLLV +
Sbjct: 67 AEFQAKTQVQQL-----------LVSITLQSECDAFPNISSDESYTLLVKE-------PV 108
Query: 151 ATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209
A ++AN V+GALRGLETFSQL D Y T ++ I D PRF+ RG+LIDTSRHY
Sbjct: 109 AVLKANRVWGALRGLETFSQLVYQDSYGTFTI----NESTIIDSPRFSHRGILIDTSRHY 164
Query: 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268
LPV +I + +++M++ K NVLHWHI+D+QSFP + T+P L KG+YS YT D
Sbjct: 165 LPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM 224
Query: 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCRE-------PLDVSKNFTFEVI 321
++ +A++RGI V+ E D PGH SWG G +L R+ P++ + N T+ +
Sbjct: 225 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFL 284
Query: 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTA--KEAYQYFVLTAQK 379
+ ++ ++FP + HLGGDEV CW S P ++ ++R K+ +++
Sbjct: 285 TTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLD 344
Query: 380 IAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGGV---CPKAVAKGFRCIYSNQGFWY 436
I + N + W+E F+ A L P T+V W + A GF I S WY
Sbjct: 345 IIATINKGSIVWQEVFDDKA-KLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAP--WY 401
Query: 437 LDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAA 494
LD + W + Y EPL+ ++L +GGE C+WGE D +++ +WPRA+A
Sbjct: 402 LDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVG 461
Query: 495 ERLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAPVLNKYA 539
ERLWS ++ + A RL RC + RG+ A P+ Y
Sbjct: 462 ERLWSSKDVRDMDD----AYDRLTRHRCRMVERGIAAQPLYAGYC 502
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 179/525 (34%), Positives = 263/525 (50%), Gaps = 55/525 (10%)
Query: 41 IWPLPAQFSSGNDTLSVDPA-LCLS---VSGKGSGLKIVEEAFERYKAIIF-----EHEV 91
+WPLP + L + P +S S G ++EEAF RY IF HE
Sbjct: 15 LWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP 74
Query: 92 EGVNSHSVFNNFRKRRSRGFDIGTLKIVVHSDNEEL-QLGVDESYTLLVAKNEGLSIIGE 150
+ + + I + S+ + + DESYTLLV +
Sbjct: 75 AEFQAKTQVQQL-----------LVSITLQSECDAFPNISSDESYTLLVKE-------PV 116
Query: 151 ATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209
A ++AN V+GALRGLETFSQL D Y T ++ I D PRF+ RG+LIDTSRHY
Sbjct: 117 AVLKANRVWGALRGLETFSQLVYQDSYGTFTINEST----IIDSPRFSHRGILIDTSRHY 172
Query: 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268
LPV +I + +++M++ K NVLHWHI+D+QSFP + T+P L KG+YS YT D
Sbjct: 173 LPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM 232
Query: 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCRE-------PLDVSKNFTFEVI 321
++ +A++RGI V+ E D PGH SWG G +L R+ P++ + N T+ +
Sbjct: 233 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFL 292
Query: 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTA--KEAYQYFVLTAQK 379
+ ++ ++FP + HLGGDEV CW S P ++ ++R K+ +++
Sbjct: 293 TTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLD 352
Query: 380 IAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGGV---CPKAVAKGFRCIYSNQGFWY 436
I + N + W+E F+ A L P T+V W + A GF I S WY
Sbjct: 353 IIATINKGSIVWQEVFDDKA-KLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAP--WY 409
Query: 437 LDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAA 494
LD + W + Y EPL+ ++L +GGE C+WGE D +++ +WPRA+A
Sbjct: 410 LDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVG 469
Query: 495 ERLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAPVLNKYA 539
ERLWS ++ + A RL RC + RG+ A P+ Y
Sbjct: 470 ERLWSSKDVRDMDD----AYDRLTRHRCRMVERGIAAQPLYAGYC 510
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 179/525 (34%), Positives = 263/525 (50%), Gaps = 55/525 (10%)
Query: 41 IWPLPAQFSSGNDTLSVDPA-LCLS---VSGKGSGLKIVEEAFERYKAIIF-----EHEV 91
+WPLP + L + P +S S G ++EEAF RY IF HE
Sbjct: 7 LWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP 66
Query: 92 EGVNSHSVFNNFRKRRSRGFDIGTLKIVVHSDNEEL-QLGVDESYTLLVAKNEGLSIIGE 150
+ + + I + S+ + + DESYTLLV +
Sbjct: 67 AEFQAKTQVQQL-----------LVSITLQSECDAFPNISSDESYTLLVKEPV------- 108
Query: 151 ATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209
A ++AN V+GALRGLETFSQL D Y T ++ I D PRF+ RG+LIDTSRHY
Sbjct: 109 AVLKANRVWGALRGLETFSQLVYQDSYGTFTI----NESTIIDSPRFSHRGILIDTSRHY 164
Query: 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268
LPV +I + +++M++ K NVLHWHI+D+QSFP + T+P L KG+YS YT D
Sbjct: 165 LPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM 224
Query: 269 IVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCRE-------PLDVSKNFTFEVI 321
++ +A++RGI V+ E D PGH SWG G +L R+ P++ + N T+ +
Sbjct: 225 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFL 284
Query: 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTA--KEAYQYFVLTAQK 379
+ ++ ++FP + HLGGDEV CW S P ++ ++R K+ +++
Sbjct: 285 TTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLD 344
Query: 380 IAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGGV---CPKAVAKGFRCIYSNQGFWY 436
I + N + W+E F+ A L P T+V W + A GF I S WY
Sbjct: 345 IIATINKGSIVWQEVFDDKA-KLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAP--WY 401
Query: 437 LDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAA 494
LD + W + Y EPL+ ++L +GGE C+WGE D +++ +WPRA+A
Sbjct: 402 LDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVG 461
Query: 495 ERLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAPVLNKYA 539
ERLWS ++ + A RL RC + RG+ A P+ Y
Sbjct: 462 ERLWSSKDVRDMDD----AYDRLTRHRCRMVERGIAAQPLYAGYC 502
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 173/557 (31%), Positives = 268/557 (48%), Gaps = 75/557 (13%)
Query: 41 IWPLP-AQFSSGNDTLSVD-PALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHS 98
+WP P + GN ++ ++ + + KG+ ++E A +R+K E V+
Sbjct: 46 LWPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFK--------EQVSLAI 97
Query: 99 VFNNFRKRRSRGFDIGTLKIVVHSDNEE-LQLGVDESYTLLVAKNEGLSIIGEATIEANT 157
+ K + D+ +V + NE+ L +DESY L V+ + + ATI AN+
Sbjct: 98 PRGSTPKLTGKAVDV---YLVNENPNEKAFSLEMDESYGLRVSPSGADRV--NATITANS 152
Query: 158 VYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQ 217
+G GLET SQL FD D + L+ I DKP + +RG+L+DT+R+Y ++ IK+
Sbjct: 153 FFGMRHGLETLSQLFVFD-DIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 211
Query: 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWK-GAYSKWERYTVEDAHEIVSFAKMR 276
IE+M+ KLN HWHI D QSFP PNL+K GA S + YT E+V F R
Sbjct: 212 TIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 271
Query: 277 GINVMAEVDVPGHAESWGAGYPNL----------WPSPSCREP----LDVSKNFTFEVIS 322
G+ V+ E D P H G G+ + W S C EP L+ +K+ ++ +
Sbjct: 272 GVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKS-YCGEPPCGQLNPTKDELYQYLE 327
Query: 323 GILSDLRKIF-PFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT-AKEAY----QYFVLT 376
I SD+ ++F ++FH+GGDEV+ CW+S+ ++ ++ ++ KE++ YF
Sbjct: 328 DIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQK 387
Query: 377 AQK---IAISKNWTPVNWEETFNSFA---SNLNPRTVVHNWLGGGVCPKA---VAKGFRC 427
AQ A K + W T ++ LN + GV P+ + KG+R
Sbjct: 388 AQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVDPQIKGLLEKGYRL 447
Query: 428 IYSNQGFWYLD--------------HLDVPWDEVYTAEPLEGISDPSNQELVLGGEVCMW 473
I SN Y D + W +VY P + +++ VLGGE +W
Sbjct: 448 IMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSP--AVIALEHRDQVLGGEAALW 505
Query: 474 GETADTSDIHQTIWPRAAAAAERLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAP 533
E +DTS + +WPRAAA AERLW+ A S + A R+ + R L R G+QA
Sbjct: 506 SEQSDTSTLDGRLWPRAAALAERLWA-EPATSWQD----AEYRMLHIRERLVRMGIQAES 560
Query: 534 VLNKYAREPPIGPGSCY 550
+ ++ + G CY
Sbjct: 561 LQPEWCYQ---NEGYCY 574
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 173/557 (31%), Positives = 268/557 (48%), Gaps = 75/557 (13%)
Query: 41 IWPLP-AQFSSGNDTLSVD-PALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHS 98
+WP P + GN ++ ++ + + KG+ ++E A +R+K E V+
Sbjct: 43 LWPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFK--------EQVSLAI 94
Query: 99 VFNNFRKRRSRGFDIGTLKIVVHSDNEE-LQLGVDESYTLLVAKNEGLSIIGEATIEANT 157
+ K + D+ +V + NE+ L +DESY L V+ + + ATI AN+
Sbjct: 95 PRGSTPKLTGKAVDV---YLVNENPNEKAFSLEMDESYGLRVSPSGADRV--NATITANS 149
Query: 158 VYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQ 217
+G GLET SQL FD D + L+ I DKP + +RG+L+DT+R+Y ++ IK+
Sbjct: 150 FFGMRHGLETLSQLFVFD-DIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 208
Query: 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWK-GAYSKWERYTVEDAHEIVSFAKMR 276
IE+M+ KLN HWHI D QSFP PNL+K GA S + YT E+V F R
Sbjct: 209 TIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 268
Query: 277 GINVMAEVDVPGHAESWGAGYPNL----------WPSPSCREP----LDVSKNFTFEVIS 322
G+ V+ E D P H G G+ + W S C EP L+ +K+ ++ +
Sbjct: 269 GVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKS-YCVEPPCGQLNPTKDELYQYLE 324
Query: 323 GILSDLRKIF-PFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT-AKEAY----QYFVLT 376
I SD+ ++F ++FH+GGDEV+ CW+S+ ++ ++ ++ KE++ YF
Sbjct: 325 DIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQK 384
Query: 377 AQK---IAISKNWTPVNWEETFNSFA---SNLNPRTVVHNWLGGGVCPKA---VAKGFRC 427
AQ A K + W T ++ LN + GV P+ + KG+R
Sbjct: 385 AQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVDPQIKGLLEKGYRL 444
Query: 428 IYSNQGFWYLD--------------HLDVPWDEVYTAEPLEGISDPSNQELVLGGEVCMW 473
I SN Y D + W +VY P + +++ VLGGE +W
Sbjct: 445 IMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSP--AVIALEHRDQVLGGEAALW 502
Query: 474 GETADTSDIHQTIWPRAAAAAERLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAP 533
E +DTS + +WPRAAA AERLW+ A S + A R+ + R L R G+QA
Sbjct: 503 SEQSDTSTLDGRLWPRAAALAERLWA-EPATSWQD----AEYRMLHIRERLVRMGIQAES 557
Query: 534 VLNKYAREPPIGPGSCY 550
+ ++ + G CY
Sbjct: 558 LQPEWCYQ---NEGYCY 571
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 169/554 (30%), Positives = 266/554 (48%), Gaps = 69/554 (12%)
Query: 41 IWPLP-AQFSSGNDTLSVD-PALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHS 98
+WP P + GN ++ ++ + + KG+ ++E A +R+K E V+
Sbjct: 43 LWPRPTGEADLGNFLSKINLNSIEVKILKKGATDDLMEAAAKRFK--------EQVSLAI 94
Query: 99 VFNNFRKRRSRGFDIGTLKIVVHSDNEE-LQLGVDESYTLLVAKNEGLSIIGEATIEANT 157
+ K + D+ +V + NE+ L +DESY L V+ + + ATI AN+
Sbjct: 95 PRGSTPKLTGKAVDV---YLVNENPNEKAFSLEMDESYGLRVSPSGADRV--NATITANS 149
Query: 158 VYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQ 217
+G GLET SQL FD D + L+ I DKP + +RG+L+DT+R+Y ++ IK+
Sbjct: 150 FFGMRHGLETLSQLFVFD-DIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESIKR 208
Query: 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWK-GAYSKWERYTVEDAHEIVSFAKMR 276
IE+M+ KLN HWHI D QSFP PNL+K GA S + YT E+V F R
Sbjct: 209 TIEAMAAVKLNTNHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLER 268
Query: 277 GINVMAEVDVPGH-AESW----------GAGYPNLWPSPSCREPLDVSKNFTFEVISGIL 325
G+ V+ E D P H E W + + +P C + L+ +K+ ++ + I
Sbjct: 269 GVRVLPEFDAPAHVGEGWQDTDLTVCFKAEPWKSYCVAPPCGQ-LNPTKDELYQYLEDIY 327
Query: 326 SDLRKIF-PFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT-AKEAY----QYFVLTAQK 379
SD+ ++F ++FH+GGDEV+ CW+S+ ++ ++ ++ KE++ YF AQ
Sbjct: 328 SDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQKAQD 387
Query: 380 ---IAISKNWTPVNWEETFNSFA---SNLNPRTVVHNWLGGGVCPKA---VAKGFRCIYS 430
A K + W T ++ LN + GV P+ + KG+R I S
Sbjct: 388 KAYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMS 447
Query: 431 NQGFWYLD--------------HLDVPWDEVYTAEPLEGISDPSNQELVLGGEVCMWGET 476
N Y D + W +VY P + +++ VLGGE +W E
Sbjct: 448 NYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSP--AVIALEHRDQVLGGEAALWSEQ 505
Query: 477 ADTSDIHQTIWPRAAAAAERLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAPVLN 536
+DTS + +WPRAAA AERLW+ A S + A R+ + R R G+QA +
Sbjct: 506 SDTSTLDGRLWPRAAALAERLWA-EPATSWQD----AEYRMLHIRERFVRMGIQAESLQP 560
Query: 537 KYAREPPIGPGSCY 550
++ + G CY
Sbjct: 561 EWCYQ---NEGYCY 571
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 171/399 (42%), Gaps = 65/399 (16%)
Query: 142 NEGLSII---GEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYI-----QDK 193
NEG +I + T+ AN G RG +T QL + K+ +V W I DK
Sbjct: 121 NEGYDLITTSNQVTLTANKPEGVFRGNQTLLQLLPAGIE-KNTVVSGVQWVIPHSNISDK 179
Query: 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWK- 252
P + +RGL++D +RH+ VD +K+ I+ S K+N H H+ D+Q + +E+ ++P+L +
Sbjct: 180 PEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEI 239
Query: 253 -----GAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCR 307
YT E +IVS+A R I V+ E+D+PGH + A Y L P +
Sbjct: 240 GSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELNPDGKRK 299
Query: 308 ----------EPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKK 357
L T++ + ++S+L I P HLGGDE N
Sbjct: 300 AMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDESNA----------- 348
Query: 358 WLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWL-GGGV 416
T+ Y YF IA S V W+ + S S +V+ NW
Sbjct: 349 -------TSAADYDYFFGRVTAIANSYGKKVVGWDPSDTS--SGATSDSVLQNWTCSAST 399
Query: 417 CPKAVAKGFRCIYSNQGFWYLD---HLDVP----W------DEVYTAEPLEGISDPSNQE 463
A AKG + I S YLD + D P W + Y +P + I +
Sbjct: 400 GTAAKAKGMKVIVSPANA-YLDMKYYSDSPIGLQWRGFVNTNRAYNWDPTDCIKGAN--- 455
Query: 464 LVLGGEVCMWGETADTSD-IHQTIWPRAAAAAERLWSRR 501
+ G E +W ET T D + ++P+ + AE W+ R
Sbjct: 456 -IYGVESTLWTETFVTQDHLDYMLYPKLLSNAEVGWTAR 493
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 172/393 (43%), Gaps = 56/393 (14%)
Query: 190 IQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPN 249
++DKPRF +RG +D +RH+ P D + + IE + KLNVLH H+ D+Q + ++ YP
Sbjct: 132 VEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRYPK 191
Query: 250 L-----WK--GAYSKWER-----------YTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291
L W+ + W YT +D EIV+FA R I V+ E+DVPGH++
Sbjct: 192 LTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHSQ 251
Query: 292 SWGAGYPNLWPSPS-CREPLDVSKNF------------TFEVISGILSDLRKIFPFELFH 338
+ A YP L P+ P++V + + E +L ++ +IFP
Sbjct: 252 AAIAAYPELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEIFPSPWIS 311
Query: 339 LGGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVN-WEETFNS 397
LGGDEV W ++ + + L + + + + + + W+E +
Sbjct: 312 LGGDEVPLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGRATSVWDEIGD- 370
Query: 398 FASNLNPRTVVHNWLG--GGVCPKAVAKGFRCIYSNQGFWYLDHLDVPWDE--------- 446
L +V +W G GG+ A+ KG+ + + YLDH D+
Sbjct: 371 --GGLPDGALVASWRGYEGGI--DALRKGYDVVXCPEHKLYLDHRQADGDDEPVPVGFVT 426
Query: 447 ----VYTAEPLEGISDPSNQELVLGGEVCMWGETADT-SDIHQTIWPRAAAAAERLWSRR 501
VY EPL G+ +LG + +W E D+ + +PR +A +E WS
Sbjct: 427 TLQAVYEFEPLPGVEGTDFPGRLLGAQANIWSEHLDSPRRVQFAAFPRLSAISEVFWS-N 485
Query: 502 EAISTGNITLTALPRLHYFRCLLNRRGVQAAPV 534
A + LT L H R L GV+ P+
Sbjct: 486 PAGRDYDEFLTRLTGAHLAR--LEAXGVEYRPL 516
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 115/268 (42%), Gaps = 51/268 (19%)
Query: 152 TIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWY-----IQDKPRFAFRGLLIDTS 206
TI A G G++T QL + S PW I+D PR+A+R ++D S
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGTIEDTPRYAWRSAMLDVS 167
Query: 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL-----------WKGAY 255
RH+ VD +K+ I+ ++ K N LH H+ D+Q + + + ++P L G Y
Sbjct: 168 RHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGY 227
Query: 256 SKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGY---------PNLWPSPSC 306
YT + EIV +A R + V+ E+D+PGH + A Y P L+
Sbjct: 228 -----YTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKV 282
Query: 307 R-EPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT 365
L V K+ T++ + ++ +L + P H+GGDE ++ T
Sbjct: 283 GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHS------------------T 324
Query: 366 AKEAYQYFVLTAQKIAISKNWTPVNWEE 393
K + F+ Q I T V W +
Sbjct: 325 PKADFVAFMKRVQPIVAKYGKTVVGWHQ 352
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 115/268 (42%), Gaps = 51/268 (19%)
Query: 152 TIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWY-----IQDKPRFAFRGLLIDTS 206
TI A G G++T QL + S PW I+D PR+A+R ++D S
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGTIEDTPRYAWRSAMLDVS 167
Query: 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL-----------WKGAY 255
RH+ VD +K+ I+ ++ K N LH H+ D+Q + + + ++P L G Y
Sbjct: 168 RHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGY 227
Query: 256 SKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGY---------PNLWPSPSC 306
YT + EIV +A R + V+ E+D+PGH + A Y P L+
Sbjct: 228 -----YTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKV 282
Query: 307 R-EPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT 365
L V K+ T++ + ++ +L + P H+GG+E ++ T
Sbjct: 283 GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNEAHS------------------T 324
Query: 366 AKEAYQYFVLTAQKIAISKNWTPVNWEE 393
K + F+ Q I T V W +
Sbjct: 325 PKADFVAFMKRVQPIVAKYGKTVVGWHQ 352
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 114/268 (42%), Gaps = 51/268 (19%)
Query: 152 TIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWY-----IQDKPRFAFRGLLIDTS 206
TI A G G++T QL + S PW I+D PR+A+R ++D S
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGTIEDTPRYAWRSAMLDVS 167
Query: 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL-----------WKGAY 255
RH+ VD +K+ I+ ++ K N LH H+ D+Q + + + ++P L G Y
Sbjct: 168 RHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGY 227
Query: 256 SKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGY---------PNLWPSPSC 306
YT + EIV +A R + V+ E+D+PGH + A Y P L+
Sbjct: 228 -----YTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKV 282
Query: 307 R-EPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT 365
L V K+ T++ + ++ +L + P H+GG E ++ T
Sbjct: 283 GFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAEAHS------------------T 324
Query: 366 AKEAYQYFVLTAQKIAISKNWTPVNWEE 393
K + F+ Q I T V W +
Sbjct: 325 PKADFVAFMKRVQPIVAKYGKTVVGWHQ 352
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 69/274 (25%)
Query: 129 LGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPW 188
+ V +Y L + K E A + G GL++ L D K + +
Sbjct: 256 MAVSGAYELKIGKKE-------AQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDAS-- 306
Query: 189 YIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP 248
D PRF +RG+ +D +R++ D + ++++ M+ KLN H+H+ D++ + +E+P P
Sbjct: 307 ---DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLP 363
Query: 249 NLWKGAYSKWER---------------------YTVEDAHEIVSFAKMRGINVMAEVDVP 287
L + + ++ +D +I+ +A+ R I V+ E+D+P
Sbjct: 364 ELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMP 423
Query: 288 GHAE----SWGAGYPNLWPSPSCREP-----------------------------LDVSK 314
HA S A Y L + +E LD S+
Sbjct: 424 AHARAAVVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQ 483
Query: 315 NFTFEVISGILSDLRKIF--PFELFHLGGDEVNT 346
F +VI G ++ + K P + +H GGDE
Sbjct: 484 RFVDKVI-GEIAQMHKEAGQPIKTWHFGGDEAKN 516
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 129 LGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPW 188
+ V +Y L + K E A + G GL++ L D K + +
Sbjct: 256 MAVSGAYELKIGKKE-------AQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDAS-- 306
Query: 189 YIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP 248
D PRF +RG+ +D +R++ D + ++++ M+ KLN H+H+ D++ + +E+P P
Sbjct: 307 ---DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLP 363
Query: 249 NLWKGAYSKWER---------------------YTVEDAHEIVSFAKMRGINVMAEVDVP 287
L + + ++ +D +I+ +A+ R I V+ E+D+P
Sbjct: 364 ELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMP 423
Query: 288 GHAES 292
HA +
Sbjct: 424 AHARA 428
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 33/185 (17%)
Query: 129 LGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPW 188
+ V +Y L + K E +IG G GL++ L D K + +
Sbjct: 256 MAVSGAYELKIGKKEA-QVIGFDQA------GVFYGLQSILSLVPSDGSGKIATLDAS-- 306
Query: 189 YIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP 248
D PRF +RG+ +D +R++ D + ++++ M+ KLN H+H+ D++ + +E+P P
Sbjct: 307 ---DAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLP 363
Query: 249 NLWKGAYSKWER---------------------YTVEDAHEIVSFAKMRGINVMAEVDVP 287
L + + ++ +D +I+ +A+ R I V+ E+D+P
Sbjct: 364 ELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMP 423
Query: 288 GHAES 292
HA +
Sbjct: 424 AHARA 428
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 110/275 (40%), Gaps = 52/275 (18%)
Query: 200 GLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLE-----------VPTYP 248
GL++D +RH+ +VIK I+++S + N LH H D +++ +E V
Sbjct: 20 GLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKD 79
Query: 249 NLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGH--------AESWGAGYPNL 300
++ Y+ + +I ++AK +GI ++ E+D P H + G Y
Sbjct: 80 GIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQG 139
Query: 301 WPSPSCREPLDVSKNFTFEVISGILSDLRKIF--PFELFHLGGDEVNTDCWSSTPHVKKW 358
S + +D++ + + ++S++ IF + FH+GGDE S+ +
Sbjct: 140 LKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSVESNHEFI--- 196
Query: 359 LRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGG--- 415
T YF+ +K ++ W + TF +NP + W G
Sbjct: 197 ------TYANKLSYFL--EKKGLKTRMWNDGLIKNTF----EQINPNIEITYWSYDGDTQ 244
Query: 416 -------------VCPKAVAKGFRCIYSNQGFWYL 437
P+ +AKGF + N + Y+
Sbjct: 245 DKNEAAERRDMRVSLPELLAKGFTVLNYNSYYLYI 279
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 71/272 (26%)
Query: 203 IDTSRHYLPVDVIKQIIESMS---YAKLNVLHWH-----IIDEQSFPLEVPTYPN----- 249
ID R Y ++ +K+I++ S Y+ +++L + ++D+ + TY +
Sbjct: 15 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 74
Query: 250 -LWKGAYSKWER-----YTVEDAHEIVSFAKMRGINVMAEVDVPGH-------AESWGAG 296
+ +G + ++ T + E++ +AK + I ++ ++ PGH E G
Sbjct: 75 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 134
Query: 297 YPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWSSTPH 354
P + +D+ + ++ F ++F+ G DE D S
Sbjct: 135 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDEYANDATS---- 190
Query: 355 VKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGG 414
++ W + W + + FA N
Sbjct: 191 ----------------------------AQGWYYLKWYQLYGKFAEYANT---------- 212
Query: 415 GVCPKAVAKGFRCIYSNQGFWYLDHLDVPWDE 446
+ A +G + + N GF+Y D DV +D+
Sbjct: 213 -LAAMAKERGLQPMAFNDGFYYEDKDDVQFDK 243
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/272 (16%), Positives = 98/272 (36%), Gaps = 71/272 (26%)
Query: 203 IDTSRHYLPVDVIKQIIESMS---YAKLNVLHWH-----IIDEQSFPLEVPTYPN----- 249
ID R Y ++ +K+I++ S Y+ +++L + ++D+ + TY +
Sbjct: 32 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 91
Query: 250 -LWKGAYSKWER-----YTVEDAHEIVSFAKMRGINVMAEVDVPGH-------AESWGAG 296
+ +G + ++ T + E++ +AK + I ++ ++ PGH E G
Sbjct: 92 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 151
Query: 297 YPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWSSTPH 354
P + +D+ + ++ F ++F+ G D+ D S
Sbjct: 152 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDQYANDATS---- 207
Query: 355 VKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGG 414
++ W + W + + FA N
Sbjct: 208 ----------------------------AQGWYYLKWYQLYGKFAEYANT---------- 229
Query: 415 GVCPKAVAKGFRCIYSNQGFWYLDHLDVPWDE 446
+ A +G + + N GF+Y D DV +D+
Sbjct: 230 -LAAMAKERGLQPMAFNDGFYYEDKDDVQFDK 260
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/272 (16%), Positives = 98/272 (36%), Gaps = 71/272 (26%)
Query: 203 IDTSRHYLPVDVIKQIIESMS---YAKLNVLHWH-----IIDEQSFPLEVPTYPN----- 249
ID R Y ++ +K+I++ S Y+ +++L + ++D+ + TY +
Sbjct: 15 IDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKK 74
Query: 250 -LWKGAYSKWER-----YTVEDAHEIVSFAKMRGINVMAEVDVPGH-------AESWGAG 296
+ +G + ++ T + E++ +AK + I ++ ++ PGH E G
Sbjct: 75 AIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIK 134
Query: 297 YPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWSSTPH 354
P + +D+ + ++ F ++F+ G D+ D S
Sbjct: 135 NPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDQYANDATS---- 190
Query: 355 VKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGG 414
++ W + W + + FA N
Sbjct: 191 ----------------------------AQGWYYLKWYQLYGKFAEYANT---------- 212
Query: 415 GVCPKAVAKGFRCIYSNQGFWYLDHLDVPWDE 446
+ A +G + + N GF+Y D DV +D+
Sbjct: 213 -LAAMAKERGLQPMAFNDGFYYEDKDDVQFDK 243
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 126/340 (37%), Gaps = 77/340 (22%)
Query: 203 IDTSRHYLPVDVIKQIIESMSYAKLNVLHWHI--------IDEQSFPLEVPTYPN----- 249
ID R Y + +K+II+ + LH + +D+ S TY +
Sbjct: 17 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFXLDDXSITANGKTYASDDVKR 76
Query: 250 -LWKGAYSKWE-----RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES-------WGAG 296
+ KG + T +++++AK +GI ++ V+ PGH ++ G
Sbjct: 77 AIEKGTNDYYNDPNGNHLTESQXTDLINYAKDKGIGLIPTVNSPGHXDAILNAXKELGIQ 136
Query: 297 YPNL--WPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWS-- 350
PN + S R +D+ ++ F E+F++G DE D
Sbjct: 137 NPNFSYFGKKSAR-TVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAK 195
Query: 351 --STPHVKKWLRDHKLTAKEAYQYFVLTAQ---KIAISKNWTPV--------NWEETFNS 397
S K+ + K Y+ F+ A +I S P N + +F S
Sbjct: 196 GWSVLQADKYYPNEGYPVK-GYEKFIAYANDLARIVKSHGLKPXAFNDGIYYNSDTSFGS 254
Query: 398 FASNLNPRTVVHNWLGG-----GVCPKAVA-KGFRCIYSN-------------QGFWYLD 438
F ++ +V W GG K +A KG + + +N QG++ LD
Sbjct: 255 FDKDI----IVSXWTGGWGGYDVASSKLLAEKGHQILNTNDAWCYVLGRNADGQGWYNLD 310
Query: 439 H-LDVPWDEVYTAEP-LEGISDPSNQELVLGGEVCMWGET 476
L+ + T+ P EG P ++GG V W +T
Sbjct: 311 QGLNGIKNTPITSVPKTEGADIP-----IIGGXVAAWADT 345
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 125/335 (37%), Gaps = 67/335 (20%)
Query: 203 IDTSRHYLPVDVIKQIIESMSYAKLNVLHW--------HIIDEQSFPLEVPTYPN----- 249
ID R Y + +K+II+ + LH ++D+ S TY +
Sbjct: 12 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 71
Query: 250 -LWKGAYSKWE-----RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES-------WGAG 296
+ KG + T +++++AK +GI ++ V+ PGH ++ G
Sbjct: 72 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 131
Query: 297 YPNL--WPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWS-- 350
PN + S R +D+ ++ F E+F++G DE D
Sbjct: 132 NPNFSYFGKKSAR-TVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAK 190
Query: 351 --STPHVKKWLRDHKLTAKEAYQYFVLTAQ---KIAISKNWTPV--------NWEETFNS 397
S K+ + K Y+ F+ A +I S P+ N + +F S
Sbjct: 191 GWSVLQADKYYPNEGYPVK-GYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGS 249
Query: 398 FASNLNPRTVVHNWLGG-----GVCPKAVA-KGFRCIYSNQGFWYLDHLDVPWDEVYTAE 451
F ++ +V W GG K +A KG + + +N ++Y+ + Y +
Sbjct: 250 FDKDI----IVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLD 305
Query: 452 P-LEGISD------PSNQEL---VLGGEVCMWGET 476
L GI + P + ++GG V W +T
Sbjct: 306 QGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADT 340
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 125/335 (37%), Gaps = 67/335 (20%)
Query: 203 IDTSRHYLPVDVIKQIIESMSYAKLNVLHW--------HIIDEQSFPLEVPTYPN----- 249
ID R Y + +K+II+ + LH ++D+ S TY +
Sbjct: 32 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 91
Query: 250 -LWKGAYSKWE-----RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES-------WGAG 296
+ KG + T +++++AK +GI ++ V+ PGH ++ G
Sbjct: 92 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 151
Query: 297 YPNL--WPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWS-- 350
PN + S R +D+ ++ F E+F++G DE D
Sbjct: 152 NPNFSYFGKKSAR-TVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAK 210
Query: 351 --STPHVKKWLRDHKLTAKEAYQYFVLTAQ---KIAISKNWTPV--------NWEETFNS 397
S K+ + K Y+ F+ A +I S P+ N + +F S
Sbjct: 211 GWSVLQADKYYPNEGYPVK-GYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGS 269
Query: 398 FASNLNPRTVVHNWLGG-----GVCPKAVA-KGFRCIYSNQGFWYLDHLDVPWDEVYTAE 451
F ++ +V W GG K +A KG + + +N ++Y+ + Y +
Sbjct: 270 FDKDI----IVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLD 325
Query: 452 P-LEGISD------PSNQEL---VLGGEVCMWGET 476
L GI + P + ++GG V W +T
Sbjct: 326 QGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADT 360
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 125/335 (37%), Gaps = 67/335 (20%)
Query: 203 IDTSRHYLPVDVIKQIIESMSYAKLNVLHW--------HIIDEQSFPLEVPTYPN----- 249
ID R Y + +K+II+ + LH ++D+ S TY +
Sbjct: 12 IDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKR 71
Query: 250 -LWKGAYSKWE-----RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES-------WGAG 296
+ KG + T +++++AK +GI ++ V+ PGH ++ G
Sbjct: 72 AIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQ 131
Query: 297 YPNL--WPSPSCREPLDVSKNFTFEVISGILSDLRKIFP--FELFHLGGDEVNTDCWS-- 350
PN + S R +D+ ++ F E+F++G D+ D
Sbjct: 132 NPNFSYFGKKSAR-TVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGLDQYANDATDAK 190
Query: 351 --STPHVKKWLRDHKLTAKEAYQYFVLTAQ---KIAISKNWTPV--------NWEETFNS 397
S K+ + K Y+ F+ A +I S P+ N + +F S
Sbjct: 191 GWSVLQADKYYPNEGYPVK-GYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGS 249
Query: 398 FASNLNPRTVVHNWLGG-----GVCPKAVA-KGFRCIYSNQGFWYLDHLDVPWDEVYTAE 451
F ++ +V W GG K +A KG + + +N ++Y+ + Y +
Sbjct: 250 FDKDI----IVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLD 305
Query: 452 P-LEGISD------PSNQEL---VLGGEVCMWGET 476
L GI + P + ++GG V W +T
Sbjct: 306 QGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADT 340
>pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|B Chain B, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|C Chain C, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|D Chain D, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|E Chain E, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|F Chain F, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|G Chain G, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|H Chain H, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|I Chain I, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|J Chain J, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|K Chain K, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|L Chain L, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|M Chain M, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|N Chain N, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|O Chain O, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|P Chain P, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
Length = 449
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 69 GSGLKIVEEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSRGFDIGTLKIVVHS-DNEEL 127
G G +I +AF Y ++F+ + FN + F L VH+ N++L
Sbjct: 132 GWGSRITIDAFAEYAELMFKELGGKIKQWITFN---EPWCMAFLSNYLG--VHAPGNKDL 186
Query: 128 QLGVDESYTLLVAKNEG------LSIIGEATIEANT 157
QL +D S+ LLVA L I GE I NT
Sbjct: 187 QLAIDVSHHLLVAHGRAVTLFRELGISGEIGIAPNT 222
>pdb|3L04|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92p Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3M4N|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302a Mutant Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3L02|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92a Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3M5D|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302r Mutant Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3KZC|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
pdb|3KZK|A Chain A, Crystal Structure Of Acetylornithine Transcarbamylase
Complexed With Acetylcitrulline
pdb|3KZM|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate
pdb|3KZN|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With N-Acetyl-L-Ornirthine
pdb|3KZO|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate And
N-Acetyl-L-Norvaline
pdb|3M4J|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3M5C|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302e Mutant Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3L05|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92s Mutant Complexed With Carbamyl Phosphate And
N-Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
>pdb|3L06|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92v Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385
G D V W + P W + + ++ YQ+F++ +K+A++ N
Sbjct: 265 GADVVYAKSWGALPFFGNWEPEKPI--RDQYQHFIVDERKMALTNN 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,240,282
Number of Sequences: 62578
Number of extensions: 754602
Number of successful extensions: 1587
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1503
Number of HSP's gapped (non-prelim): 43
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)