Query 008821
Match_columns 552
No_of_seqs 239 out of 1615
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:00:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499 Beta-N-acetylhexosamin 100.0 3E-105 7E-110 824.8 43.5 489 40-550 35-542 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 1.9E-88 4.2E-93 710.5 33.1 329 196-528 1-348 (348)
3 cd06570 GH20_chitobiase-like_1 100.0 1.4E-84 2.9E-89 669.3 30.3 299 196-517 1-311 (311)
4 cd06563 GH20_chitobiase-like T 100.0 1E-84 2.2E-89 685.2 29.7 315 196-517 1-357 (357)
5 cd06569 GH20_Sm-chitobiase-lik 100.0 1.7E-82 3.7E-87 682.2 31.6 313 192-504 1-421 (445)
6 cd06568 GH20_SpHex_like A subg 100.0 4.5E-80 9.9E-85 641.6 28.9 296 196-517 1-329 (329)
7 COG3525 Chb N-acetyl-beta-hexo 100.0 2.4E-76 5.3E-81 629.8 30.5 393 131-536 204-647 (732)
8 PF00728 Glyco_hydro_20: Glyco 100.0 1.2E-75 2.5E-80 615.2 15.7 306 196-501 1-351 (351)
9 cd02742 GH20_hexosaminidase Be 100.0 6.1E-74 1.3E-78 591.0 27.0 284 198-499 1-303 (303)
10 cd06564 GH20_DspB_LnbB-like Gl 100.0 2.3E-70 4.9E-75 570.1 25.5 286 197-500 1-326 (326)
11 cd06565 GH20_GcnA-like Glycosy 100.0 4.5E-52 9.8E-57 427.6 20.4 280 198-499 1-301 (301)
12 PF02838 Glyco_hydro_20b: Glyc 99.6 3E-15 6.6E-20 134.3 13.0 123 39-193 2-124 (124)
13 PF14845 Glycohydro_20b2: beta 99.6 2E-15 4.4E-20 136.6 11.6 122 41-171 1-128 (128)
14 PF07555 NAGidase: beta-N-acet 97.9 0.0001 2.2E-09 76.3 12.8 174 199-415 1-191 (306)
15 PF02638 DUF187: Glycosyl hydr 97.5 0.0067 1.4E-07 63.3 18.2 183 198-385 2-220 (311)
16 PF13200 DUF4015: Putative gly 96.4 0.12 2.5E-06 54.0 15.6 163 212-388 12-190 (316)
17 PF10566 Glyco_hydro_97: Glyco 95.5 0.037 8.1E-07 56.4 7.1 114 207-330 26-148 (273)
18 COG1649 Uncharacterized protei 95.1 1.4 3.1E-05 47.5 18.0 137 195-334 44-200 (418)
19 PF02449 Glyco_hydro_42: Beta- 94.7 0.2 4.4E-06 53.4 10.6 110 210-334 7-125 (374)
20 PF14871 GHL6: Hypothetical gl 94.5 0.46 9.9E-06 43.3 10.8 110 216-334 3-125 (132)
21 smart00642 Aamy Alpha-amylase 93.8 0.42 9E-06 45.3 9.4 76 210-292 16-97 (166)
22 TIGR02402 trehalose_TreZ malto 92.4 1.5 3.3E-05 49.3 12.8 113 212-332 110-236 (542)
23 PRK12313 glycogen branching en 92.4 2 4.3E-05 49.4 13.9 117 209-332 166-301 (633)
24 PRK12568 glycogen branching en 92.0 1.7 3.6E-05 50.4 12.5 116 209-332 265-400 (730)
25 PRK14705 glycogen branching en 91.8 1.5 3.2E-05 53.6 12.3 110 215-332 768-896 (1224)
26 COG3661 AguA Alpha-glucuronida 91.8 6.1 0.00013 42.6 15.3 169 127-334 89-279 (684)
27 TIGR01515 branching_enzym alph 91.4 1.8 3.9E-05 49.4 12.1 110 215-332 159-287 (613)
28 PF00150 Cellulase: Cellulase 91.4 1.7 3.6E-05 43.6 10.7 154 197-388 9-166 (281)
29 PLN02447 1,4-alpha-glucan-bran 91.3 7.2 0.00016 45.5 16.7 166 210-393 247-445 (758)
30 PRK05402 glycogen branching en 91.1 2.6 5.5E-05 49.2 13.1 117 209-332 261-396 (726)
31 PRK14706 glycogen branching en 90.6 2.4 5.3E-05 48.6 12.0 116 209-332 163-298 (639)
32 PLN02960 alpha-amylase 90.5 2.5 5.5E-05 49.6 12.1 116 209-332 412-548 (897)
33 PF03648 Glyco_hydro_67N: Glyc 90.2 1.8 3.9E-05 38.7 8.5 34 131-167 88-121 (122)
34 TIGR02104 pulA_typeI pullulana 89.7 6.4 0.00014 45.0 14.6 132 199-332 149-311 (605)
35 COG0296 GlgB 1,4-alpha-glucan 89.6 3.1 6.7E-05 47.3 11.6 122 201-332 150-295 (628)
36 KOG3698 Hyaluronoglucosaminida 89.2 1.2 2.7E-05 49.1 7.7 92 205-329 25-119 (891)
37 TIGR02403 trehalose_treC alpha 89.0 1.7 3.8E-05 48.8 9.2 114 211-331 25-185 (543)
38 TIGR02100 glgX_debranch glycog 88.9 3.4 7.4E-05 47.9 11.7 107 218-332 189-333 (688)
39 PF02065 Melibiase: Melibiase; 88.4 2.7 5.9E-05 45.4 9.8 122 210-340 55-190 (394)
40 PF00128 Alpha-amylase: Alpha 88.4 0.44 9.5E-06 48.2 3.7 74 212-292 3-79 (316)
41 PRK03705 glycogen debranching 88.4 2.8 6.2E-05 48.2 10.5 109 218-333 184-329 (658)
42 PRK10785 maltodextrin glucosid 84.7 3.8 8.3E-05 46.7 9.0 79 207-292 171-253 (598)
43 PRK14511 maltooligosyl trehalo 84.4 4 8.6E-05 48.2 9.0 77 209-292 16-96 (879)
44 TIGR02401 trehalose_TreY malto 84.0 4.7 0.0001 47.3 9.4 77 209-292 12-92 (825)
45 PLN02361 alpha-amylase 83.9 15 0.00033 39.8 12.7 112 213-330 29-169 (401)
46 PRK09441 cytoplasmic alpha-amy 82.7 5.9 0.00013 43.8 9.3 76 213-291 22-107 (479)
47 PLN02784 alpha-amylase 82.6 6.7 0.00014 46.1 9.8 87 199-293 507-596 (894)
48 TIGR02102 pullulan_Gpos pullul 82.1 27 0.00059 42.7 15.0 120 211-332 478-634 (1111)
49 TIGR02456 treS_nterm trehalose 82.0 5 0.00011 45.1 8.5 74 211-291 26-102 (539)
50 cd06593 GH31_xylosidase_YicI Y 81.7 9.4 0.0002 39.5 9.9 125 193-331 6-148 (308)
51 PRK14510 putative bifunctional 81.7 13 0.00027 46.1 12.3 107 217-330 191-333 (1221)
52 PRK10933 trehalose-6-phosphate 80.9 7.3 0.00016 44.0 9.2 75 211-292 31-108 (551)
53 KOG0470 1,4-alpha-glucan branc 79.0 5.3 0.00011 45.8 7.2 107 215-330 257-392 (757)
54 PRK14582 pgaB outer membrane N 78.4 1.2E+02 0.0026 35.2 18.0 159 198-364 314-489 (671)
55 PLN00196 alpha-amylase; Provis 74.4 15 0.00033 40.1 9.2 71 212-292 43-119 (428)
56 PLN02877 alpha-amylase/limit d 73.7 48 0.001 39.9 13.4 28 263-291 465-492 (970)
57 PRK14507 putative bifunctional 72.9 13 0.00028 47.2 8.9 77 208-291 753-833 (1693)
58 PLN03244 alpha-amylase; Provis 71.6 11 0.00025 43.9 7.5 72 260-332 437-523 (872)
59 cd06598 GH31_transferase_CtsZ 71.3 23 0.00049 37.0 9.3 126 193-330 6-152 (317)
60 cd06592 GH31_glucosidase_KIAA1 71.3 29 0.00064 35.9 10.0 108 208-329 25-151 (303)
61 PLN02187 rooty/superroot1 70.9 10 0.00022 41.8 6.8 25 258-282 218-242 (462)
62 TIGR02455 TreS_stutzeri trehal 70.2 14 0.00031 42.1 7.8 70 216-291 77-156 (688)
63 COG0436 Aspartate/tyrosine/aro 69.6 11 0.00025 40.5 6.8 26 258-283 177-202 (393)
64 COG3977 Alanine-alpha-ketoisov 69.4 2.6 5.6E-05 43.5 1.6 128 132-283 88-218 (417)
65 PF01055 Glyco_hydro_31: Glyco 69.1 53 0.0012 35.7 12.0 133 193-339 25-176 (441)
66 PF13199 Glyco_hydro_66: Glyco 69.0 11 0.00025 42.4 6.7 222 191-431 97-362 (559)
67 PF01301 Glyco_hydro_35: Glyco 68.0 28 0.0006 36.5 9.1 85 190-291 4-90 (319)
68 PLN00145 tyrosine/nicotianamin 67.9 11 0.00024 41.0 6.3 25 258-282 204-228 (430)
69 TIGR03234 OH-pyruv-isom hydrox 64.8 9.5 0.00021 38.0 4.7 76 197-284 68-143 (254)
70 KOG0258 Alanine aminotransfera 64.0 53 0.0012 35.4 10.0 143 151-341 139-295 (475)
71 PRK07681 aspartate aminotransf 63.4 20 0.00044 38.2 7.2 24 258-281 180-203 (399)
72 TIGR02103 pullul_strch alpha-1 63.0 88 0.0019 37.6 12.7 28 264-292 404-431 (898)
73 cd06595 GH31_xylosidase_XylS-l 62.6 24 0.00051 36.4 7.3 126 193-328 7-145 (292)
74 cd00019 AP2Ec AP endonuclease 62.3 8.1 0.00018 39.2 3.7 62 210-284 82-143 (279)
75 PLN02368 alanine transaminase 62.1 16 0.00035 39.5 6.2 26 258-283 224-249 (407)
76 PRK07590 L,L-diaminopimelate a 62.0 38 0.00083 36.3 9.1 25 258-282 190-214 (409)
77 PRK02308 uvsE putative UV dama 61.4 1.3E+02 0.0029 31.2 12.6 63 259-341 86-156 (303)
78 cd06602 GH31_MGAM_SI_GAA This 61.4 1.4E+02 0.003 31.6 12.9 109 208-331 19-153 (339)
79 PRK05839 hypothetical protein; 61.2 52 0.0011 34.8 9.8 25 258-282 169-193 (374)
80 PLN00143 tyrosine/nicotianamin 61.2 22 0.00047 38.3 6.9 25 258-282 184-208 (409)
81 PF07745 Glyco_hydro_53: Glyco 60.9 1.3E+02 0.0029 31.8 12.4 132 216-385 27-167 (332)
82 PTZ00377 alanine aminotransfer 60.7 22 0.00049 39.1 7.1 25 258-282 232-256 (481)
83 PRK06348 aspartate aminotransf 58.8 23 0.00049 37.7 6.5 24 258-281 176-199 (384)
84 PRK09505 malS alpha-amylase; R 58.7 40 0.00086 39.2 8.8 79 212-291 229-318 (683)
85 cd00452 KDPG_aldolase KDPG and 58.7 12 0.00026 35.9 4.0 121 211-342 14-152 (190)
86 TIGR01531 glyc_debranch glycog 57.1 40 0.00087 42.0 8.7 82 212-300 131-223 (1464)
87 PTZ00433 tyrosine aminotransfe 57.1 40 0.00087 36.2 8.2 25 258-282 191-215 (412)
88 PRK09257 aromatic amino acid a 56.7 42 0.0009 35.8 8.2 25 258-282 186-210 (396)
89 PRK06552 keto-hydroxyglutarate 55.5 31 0.00066 34.0 6.3 119 211-343 23-165 (213)
90 PF01261 AP_endonuc_2: Xylose 55.5 12 0.00027 35.3 3.5 63 212-284 70-132 (213)
91 PRK08636 aspartate aminotransf 54.5 83 0.0018 33.6 10.0 24 258-281 189-212 (403)
92 COG0084 TatD Mg-dependent DNas 54.4 91 0.002 31.7 9.6 148 263-430 16-177 (256)
93 PF14701 hDGE_amylase: glucano 54.3 1E+02 0.0022 33.8 10.4 90 211-301 20-116 (423)
94 PRK05301 pyrroloquinoline quin 53.9 41 0.00088 35.8 7.5 58 207-289 43-100 (378)
95 cd06591 GH31_xylosidase_XylS X 52.0 1.1E+02 0.0023 32.0 10.1 122 194-327 7-143 (319)
96 cd06565 GH20_GcnA-like Glycosy 51.8 14 0.0003 38.3 3.4 66 160-230 11-77 (301)
97 PF01212 Beta_elim_lyase: Beta 51.7 56 0.0012 33.7 7.8 60 208-282 104-163 (290)
98 TIGR03542 DAPAT_plant LL-diami 51.4 89 0.0019 33.4 9.7 24 258-281 187-210 (402)
99 PRK09276 LL-diaminopimelate am 50.8 61 0.0013 34.3 8.2 24 258-281 180-203 (385)
100 COG1874 LacA Beta-galactosidas 50.7 1.3E+02 0.0028 35.0 11.0 125 210-349 27-167 (673)
101 TIGR02109 PQQ_syn_pqqE coenzym 50.6 41 0.00089 35.5 6.8 59 207-290 34-92 (358)
102 PTZ00376 aspartate aminotransf 50.6 89 0.0019 33.4 9.5 25 258-282 190-214 (404)
103 PRK07337 aminotransferase; Val 50.3 41 0.00088 35.7 6.8 26 258-283 177-202 (388)
104 PLN02656 tyrosine transaminase 50.1 44 0.00095 35.9 7.1 24 258-281 183-206 (409)
105 PF05913 DUF871: Bacterial pro 50.0 45 0.00097 35.6 6.9 54 211-284 12-67 (357)
106 KOG0259 Tyrosine aminotransfer 49.9 20 0.00043 38.4 4.1 34 257-291 212-245 (447)
107 PRK13210 putative L-xylulose 5 49.9 2.6E+02 0.0056 28.0 12.3 130 214-389 17-150 (284)
108 cd06594 GH31_glucosidase_YihQ 49.1 51 0.0011 34.5 7.1 126 193-328 6-151 (317)
109 cd06600 GH31_MGAM-like This fa 49.0 1.4E+02 0.0031 31.0 10.5 110 208-329 19-146 (317)
110 PLN02376 1-aminocyclopropane-1 48.8 76 0.0016 35.3 8.8 25 258-282 213-237 (496)
111 PRK09265 aminotransferase AlaT 48.6 56 0.0012 34.9 7.6 25 258-282 182-206 (404)
112 PF03198 Glyco_hydro_72: Gluca 47.8 2.1E+02 0.0046 29.9 11.2 128 212-391 52-181 (314)
113 PLN02231 alanine transaminase 47.8 76 0.0016 35.8 8.7 25 258-282 285-309 (534)
114 PRK08068 transaminase; Reviewe 46.9 37 0.00081 36.0 5.9 24 258-281 181-204 (389)
115 PRK06290 aspartate aminotransf 46.5 1.2E+02 0.0026 32.6 9.8 24 258-281 193-216 (410)
116 PRK09856 fructoselysine 3-epim 45.6 70 0.0015 32.1 7.4 62 211-284 88-149 (275)
117 PRK09275 aspartate aminotransf 45.3 64 0.0014 36.3 7.5 24 258-281 255-280 (527)
118 TIGR03540 DapC_direct LL-diami 45.1 75 0.0016 33.5 7.9 24 258-281 178-201 (383)
119 PRK10658 putative alpha-glucos 44.8 1.3E+02 0.0027 35.0 10.0 125 194-331 264-407 (665)
120 PRK05942 aspartate aminotransf 44.8 59 0.0013 34.6 7.0 25 258-282 184-208 (394)
121 PRK07324 transaminase; Validat 44.5 1.5E+02 0.0032 31.4 10.0 26 258-283 167-192 (373)
122 PRK08363 alanine aminotransfer 44.2 71 0.0015 34.0 7.5 24 258-281 180-203 (398)
123 PRK10076 pyruvate formate lyas 43.3 1E+02 0.0023 30.3 7.9 66 211-281 143-210 (213)
124 TIGR03538 DapC_gpp succinyldia 42.9 1.4E+02 0.003 31.7 9.5 24 258-281 179-202 (393)
125 PRK08960 hypothetical protein; 42.9 50 0.0011 35.0 6.1 26 258-283 179-204 (387)
126 PRK01060 endonuclease IV; Prov 42.7 3.6E+02 0.0078 27.0 15.3 59 200-280 5-63 (281)
127 cd06589 GH31 The enzymes of gl 41.6 55 0.0012 33.1 5.9 78 194-284 7-86 (265)
128 PRK13355 bifunctional HTH-doma 41.2 99 0.0021 34.4 8.3 24 258-281 295-318 (517)
129 COG3280 TreY Maltooligosyl tre 40.7 64 0.0014 37.5 6.5 74 207-293 13-96 (889)
130 CHL00130 rbcS ribulose-1,5-bis 39.9 2.1E+02 0.0047 26.2 8.5 77 255-341 8-84 (138)
131 PRK05718 keto-hydroxyglutarate 39.5 46 0.00099 32.8 4.7 80 210-292 24-123 (212)
132 PF05089 NAGLU: Alpha-N-acetyl 39.5 39 0.00084 35.7 4.3 65 267-333 98-171 (333)
133 PLN03059 beta-galactosidase; P 39.3 2.9E+02 0.0063 33.0 11.7 80 187-283 36-117 (840)
134 COG0134 TrpC Indole-3-glycerol 38.8 45 0.00098 33.8 4.6 74 260-340 139-212 (254)
135 PRK06358 threonine-phosphate d 38.7 1.2E+02 0.0026 31.7 8.1 25 258-282 155-179 (354)
136 TIGR03801 asp_4_decarbox aspar 38.6 1E+02 0.0022 34.7 7.8 24 258-281 254-279 (521)
137 PRK06015 keto-hydroxyglutarate 38.6 53 0.0011 32.1 4.9 79 211-292 14-112 (201)
138 TIGR00542 hxl6Piso_put hexulos 38.4 48 0.001 33.5 4.9 61 212-284 93-153 (279)
139 PF14542 Acetyltransf_CG: GCN5 38.4 24 0.00053 28.8 2.2 38 260-300 38-75 (78)
140 TIGR01182 eda Entner-Doudoroff 38.3 50 0.0011 32.4 4.7 120 211-344 18-159 (204)
141 TIGR01265 tyr_nico_aTase tyros 37.9 56 0.0012 34.9 5.5 26 258-283 183-208 (403)
142 cd06603 GH31_GANC_GANAB_alpha 37.6 2.4E+02 0.0052 29.6 10.1 111 208-330 19-147 (339)
143 PLN02607 1-aminocyclopropane-1 37.0 2.4E+02 0.0053 30.8 10.4 63 204-282 175-238 (447)
144 PF13380 CoA_binding_2: CoA bi 37.0 1.1E+02 0.0023 27.0 6.2 101 151-281 3-106 (116)
145 smart00518 AP2Ec AP endonuclea 37.0 4.3E+02 0.0094 26.2 14.7 51 215-281 12-62 (273)
146 TIGR01866 cas_Csn2 CRISPR-asso 36.6 68 0.0015 31.8 5.3 66 195-282 131-196 (216)
147 COG1523 PulA Type II secretory 36.5 2.4E+02 0.0051 33.0 10.4 69 263-332 264-351 (697)
148 PRK13957 indole-3-glycerol-pho 36.5 43 0.00094 33.9 4.0 71 260-337 134-204 (247)
149 PF03851 UvdE: UV-endonuclease 35.9 1.8E+02 0.004 29.9 8.5 43 240-282 62-105 (275)
150 PTZ00372 endonuclease 4-like p 35.6 2.4E+02 0.0053 30.7 9.8 61 200-282 134-194 (413)
151 PTZ00372 endonuclease 4-like p 35.3 57 0.0012 35.5 5.0 80 199-284 303-391 (413)
152 COG1168 MalY Bifunctional PLP- 35.2 39 0.00084 36.2 3.6 27 258-284 172-199 (388)
153 PLN00175 aminotransferase fami 35.1 1.3E+02 0.0029 32.4 7.9 25 258-282 201-225 (413)
154 PF01565 FAD_binding_4: FAD bi 34.5 46 0.00099 29.7 3.6 28 262-291 9-36 (139)
155 COG0366 AmyA Glycosidases [Car 33.1 1.4E+02 0.0029 32.6 7.7 73 212-291 28-103 (505)
156 PRK09147 succinyldiaminopimela 32.1 62 0.0013 34.4 4.7 24 258-281 180-203 (396)
157 PF07488 Glyco_hydro_67M: Glyc 31.3 4.2E+02 0.0091 27.8 10.1 119 188-334 13-150 (328)
158 PF14488 DUF4434: Domain of un 31.0 3.4E+02 0.0073 25.6 8.9 100 209-334 16-117 (166)
159 PLN02450 1-aminocyclopropane-1 30.6 72 0.0016 35.2 5.0 25 258-282 205-229 (468)
160 PRK09148 aminotransferase; Val 30.6 77 0.0017 34.0 5.1 24 258-281 179-202 (405)
161 cd02875 GH18_chitobiase Chitob 30.6 1.9E+02 0.004 30.8 7.9 82 267-385 67-149 (358)
162 COG0402 SsnA Cytosine deaminas 30.5 2.2E+02 0.0048 30.7 8.7 152 263-439 128-285 (421)
163 COG3589 Uncharacterized conser 30.4 1.5E+02 0.0032 31.5 6.7 60 210-288 13-72 (360)
164 cd06604 GH31_glucosidase_II_Ma 29.9 2.1E+02 0.0046 30.0 8.2 122 194-330 7-147 (339)
165 COG1167 ARO8 Transcriptional r 29.6 3E+02 0.0066 30.2 9.6 30 258-288 241-270 (459)
166 TIGR03537 DapC succinyldiamino 29.4 59 0.0013 33.9 3.9 25 258-282 150-174 (350)
167 PF02679 ComA: (2R)-phospho-3- 29.4 1.2E+02 0.0026 30.6 5.8 25 260-284 109-133 (244)
168 PRK06464 phosphoenolpyruvate s 29.1 8E+02 0.017 29.3 13.4 125 262-432 647-774 (795)
169 PRK07114 keto-hydroxyglutarate 29.0 91 0.002 31.0 4.9 80 211-293 25-128 (222)
170 COG1306 Uncharacterized conser 28.6 1.3E+02 0.0027 31.4 5.8 152 213-379 77-254 (400)
171 cd06597 GH31_transferase_CtsY 28.6 4.8E+02 0.01 27.5 10.6 132 193-330 6-174 (340)
172 cd06601 GH31_lyase_GLase GLase 28.5 5.4E+02 0.012 27.1 10.9 109 200-330 12-121 (332)
173 PRK00278 trpC indole-3-glycero 28.3 80 0.0017 32.0 4.5 46 218-287 125-170 (260)
174 TIGR02668 moaA_archaeal probab 28.2 1.2E+02 0.0026 31.0 5.9 58 207-289 37-95 (302)
175 PRK09989 hypothetical protein; 28.1 1.1E+02 0.0025 30.4 5.6 78 199-295 173-252 (258)
176 smart00633 Glyco_10 Glycosyl h 28.1 1.4E+02 0.003 30.0 6.1 64 258-335 10-73 (254)
177 COG2355 Zn-dependent dipeptida 27.9 5.4E+02 0.012 27.0 10.5 133 213-368 149-294 (313)
178 PRK13209 L-xylulose 5-phosphat 27.5 87 0.0019 31.6 4.6 61 212-284 98-158 (283)
179 PF13204 DUF4038: Protein of u 27.4 2E+02 0.0043 29.6 7.3 115 211-343 28-156 (289)
180 PF01081 Aldolase: KDPG and KH 26.9 52 0.0011 32.1 2.7 120 210-344 17-159 (196)
181 TIGR00587 nfo apurinic endonuc 26.9 3.4E+02 0.0074 27.4 8.9 52 214-281 12-63 (274)
182 KOG0256 1-aminocyclopropane-1- 26.7 3.1E+02 0.0067 30.0 8.5 67 201-283 198-265 (471)
183 PRK08361 aspartate aminotransf 26.5 2.1E+02 0.0045 30.3 7.5 25 258-282 180-204 (391)
184 PRK07366 succinyldiaminopimela 26.3 93 0.002 32.9 4.8 24 258-281 179-202 (388)
185 PRK13210 putative L-xylulose 5 26.2 1E+02 0.0022 30.9 4.9 62 211-284 92-153 (284)
186 PF09183 DUF1947: Domain of un 26.0 45 0.00098 26.6 1.7 23 206-228 1-24 (65)
187 PLN02951 Molybderin biosynthes 26.0 2.1E+02 0.0045 30.6 7.4 59 208-290 88-147 (373)
188 PRK08056 threonine-phosphate d 25.6 2.2E+02 0.0048 29.7 7.5 25 258-282 156-180 (356)
189 TIGR01418 PEP_synth phosphoeno 25.3 3.4E+02 0.0074 32.2 9.5 143 191-365 590-761 (782)
190 COG1313 PflX Uncharacterized F 25.0 1.4E+02 0.0031 31.0 5.5 58 212-282 269-333 (335)
191 COG1217 TypA Predicted membran 24.5 45 0.00098 36.8 1.9 22 271-292 47-81 (603)
192 cd01299 Met_dep_hydrolase_A Me 24.3 3.7E+02 0.0079 27.7 8.8 63 211-284 118-180 (342)
193 cd02874 GH18_CFLE_spore_hydrol 24.2 5.6E+02 0.012 26.2 10.1 90 266-387 47-139 (313)
194 PRK14456 ribosomal RNA large s 24.1 5.6E+02 0.012 27.4 10.1 77 192-288 241-320 (368)
195 PRK13840 sucrose phosphorylase 23.7 2.7E+02 0.0058 31.2 7.8 63 211-291 18-90 (495)
196 KOG0462 Elongation factor-type 23.7 67 0.0015 36.1 3.0 31 262-292 92-138 (650)
197 PRK09997 hydroxypyruvate isome 23.7 84 0.0018 31.3 3.7 76 197-284 69-144 (258)
198 PRK13209 L-xylulose 5-phosphat 23.3 7.5E+02 0.016 24.6 14.7 133 214-389 22-155 (283)
199 PRK05764 aspartate aminotransf 23.1 1.2E+02 0.0025 32.1 4.8 26 258-283 178-203 (393)
200 TIGR02717 AcCoA-syn-alpha acet 22.9 6.8E+02 0.015 27.4 10.8 114 151-282 10-127 (447)
201 COG5587 Uncharacterized conser 22.8 1.1E+02 0.0024 29.3 3.9 50 334-387 104-155 (228)
202 PF01244 Peptidase_M19: Membra 22.6 34 0.00074 35.9 0.6 88 258-370 211-307 (320)
203 TIGR00542 hxl6Piso_put hexulos 22.5 7.8E+02 0.017 24.6 14.4 131 213-389 16-150 (279)
204 KOG0464 Elongation factor G [T 22.4 80 0.0017 34.3 3.2 28 265-292 75-115 (753)
205 TIGR03586 PseI pseudaminic aci 22.3 3E+02 0.0066 29.0 7.5 75 206-284 9-97 (327)
206 PF03102 NeuB: NeuB family; I 22.2 85 0.0018 31.6 3.3 51 260-346 52-102 (241)
207 PRK05967 cystathionine beta-ly 21.6 1.3E+02 0.0029 32.4 4.9 25 259-283 161-185 (395)
208 PF02836 Glyco_hydro_2_C: Glyc 21.6 4.8E+02 0.01 26.5 8.9 123 209-394 32-159 (298)
209 COG2100 Predicted Fe-S oxidore 21.4 2.2E+02 0.0048 30.2 6.0 51 205-277 234-284 (414)
210 PF12971 NAGLU_N: Alpha-N-acet 21.3 4.2E+02 0.0091 22.0 6.8 32 131-168 30-61 (86)
211 TIGR00629 uvde UV damage endon 21.1 3.2E+02 0.0069 28.7 7.3 20 263-282 93-112 (312)
212 TIGR00190 thiC thiamine biosyn 21.1 93 0.002 33.6 3.4 24 266-291 245-268 (423)
213 PRK13505 formate--tetrahydrofo 21.0 2.6E+02 0.0055 31.7 6.9 49 212-282 358-406 (557)
214 COG0826 Collagenase and relate 21.0 1.2E+02 0.0026 32.3 4.2 91 260-364 45-138 (347)
215 PRK14467 ribosomal RNA large s 20.8 1.8E+02 0.004 30.9 5.6 59 211-283 266-324 (348)
216 PRK10626 hypothetical protein; 20.8 3.7E+02 0.0081 27.1 7.4 77 12-88 2-82 (239)
217 PRK14465 ribosomal RNA large s 20.2 3.7E+02 0.008 28.6 7.7 72 192-283 219-292 (342)
218 TIGR03569 NeuB_NnaB N-acetylne 20.1 2E+02 0.0043 30.4 5.6 75 206-284 8-96 (329)
219 cd00765 Pyrophosphate_PFK Phos 20.1 8.2E+02 0.018 27.8 10.7 109 200-346 138-252 (550)
No 1
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-105 Score=824.84 Aligned_cols=489 Identities=45% Similarity=0.806 Sum_probs=409.2
Q ss_pred ceeecccEEEEcCC-eEEECC-CcEEEEcCCCchHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCCcccceeE
Q 008821 40 YIWPLPAQFSSGND-TLSVDP-ALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSRGFDIGTLK 117 (552)
Q Consensus 40 ~liP~P~~v~~~~g-~~~l~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (552)
.+||.|+++..++. .-.+.. ...+..+. .....++.++++||..+++....-.. ....... ....... .+.
T Consensus 35 ~lWP~P~~~~~~~~l~~~i~~~~~~~~~~~-~~~~~il~a~~~ry~~~i~~~~~~~~---p~~~~~~-~~~~~~~--~~~ 107 (542)
T KOG2499|consen 35 ALWPLPRTFSCGDELAPEIFYSQIDINLGA-GKGCAILRAAFDRYMNIIFGRVEWDP---PLLSFHV-KLGGEAA--LIT 107 (542)
T ss_pred ccccCCccccccccccccccceeecccccC-CcchhHHHHHHHHHhhhhhcccccCC---ccceeee-eccceEE--EEE
Confidence 69999999998886 212211 11112222 23458999999999999886421100 0000000 0111111 122
Q ss_pred EEEec-Ccc-cccCCCCCCeEEEEecCCCccceeeEEEEEcCchhhhHHHHHHHHhhccCCCCceeEeeccceEEEcCCC
Q 008821 118 IVVHS-DNE-ELQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPR 195 (552)
Q Consensus 118 i~~~~-~~~-~~~~~~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~i~~~~~~I~D~P~ 195 (552)
++++. ++. +...+.||+|+|.|+.+.. .+.|.|++++||++|++||.||+..+...+.+.+. ..+|.|+||
T Consensus 108 ~~~~~~c~s~p~l~~~dEsYtL~V~~~~~-----~a~i~A~tvwGAlrglETfSqLv~~d~~~~~~~~~--~~~I~D~Pr 180 (542)
T KOG2499|consen 108 LTVTVECPSLPTLHGVDESYTLVVSTTAT-----FAVILANTVWGALRGLETFSQLVWGDSIGGLFMIA--TAYIQDKPR 180 (542)
T ss_pred EeecCCCCCcCcccccccceEEEeecCcc-----eEEEeehhHHHHHHHHHHHHHHheeccCCceEEee--eeeEeccCC
Confidence 22322 222 2234569999999985532 59999999999999999999999988765544333 359999999
Q ss_pred CccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCCCCCCCCCHHHHHHHHHHHH
Q 008821 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHEIVSFAK 274 (552)
Q Consensus 196 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~~~~~~YT~~ei~elv~yA~ 274 (552)
|+|||+|||+||||+|++.||++||.||+.|+||||||++|+|+||+|++++|||. +|||+.++.||++|++++|+||+
T Consensus 181 F~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yar 260 (542)
T KOG2499|consen 181 FGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYAR 260 (542)
T ss_pred CcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996 99999999999999999999999
Q ss_pred HcCCEEEEeecCCCccchHhhhCCCCC-C--CCCC----CCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCc
Q 008821 275 MRGINVMAEVDVPGHAESWGAGYPNLW-P--SPSC----REPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTD 347 (552)
Q Consensus 275 ~rgI~VIPEiD~PGH~~a~~~~yp~l~-~--~~~~----~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~ 347 (552)
.|||+|+||||+|||+++|..+||+|. + +..| ..+|||+++.+|+|+++++.|+.+.||..+||+|||||...
T Consensus 261 lRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~~HlGGDEV~~~ 340 (542)
T KOG2499|consen 261 LRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEFFHLGGDEVSTP 340 (542)
T ss_pred hccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHHeecCCceeecc
Confidence 999999999999999999999999962 2 1222 34699999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHhcCCeeeEecccccccCCCCCCCeEEEEeCCCC---chHHHHH
Q 008821 348 CWSSTPHVKKWLRDHKLTAK--EAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGG---VCPKAVA 422 (552)
Q Consensus 348 ~w~~~p~~~~~~~~~g~~~~--~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~~l~~~~iv~~W~~~~---~~~~~~~ 422 (552)
||+++|++|++|+++|.... +++.+|++++.+++...+++++.|+|.+.+. ..+++++|||.|.... ...+...
T Consensus 341 CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~-~~i~p~tiiq~W~~~~~~~~~~k~v~ 419 (542)
T KOG2499|consen 341 CWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNK-RKIDPRTIIQIWKIGTWYPKELKIVT 419 (542)
T ss_pred cccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhcccc-ccCCCCceeeeeccCCccHHHHHHHh
Confidence 99999999999999998654 6899999999999999999999999999764 4569999999998754 5667889
Q ss_pred cCCcEEEeCCCceeccCC--CCcccccccccccCCCCCcCcccceeeeeeeeecCCCCCCcchhchhhhHHHHHHHcCCc
Q 008821 423 KGFRCIYSNQGFWYLDHL--DVPWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSR 500 (552)
Q Consensus 423 ~G~~vI~s~~~~~Yld~~--~~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~Pr~~a~AE~~W~~ 500 (552)
+||++|+|++.+||||++ +.+|.++|..+|.++..+.++++.|+|||+|||+|++|..+++.++|||+.|+|||+||.
T Consensus 420 ~~~~~ivs~s~~wYLd~~~~g~dw~~~Y~~~p~~~~g~~~~k~lVlGGE~cmWgE~vD~t~L~~RlWPRAsA~AERLWS~ 499 (542)
T KOG2499|consen 420 KGYRFIVSNSAAWYLDHIGYGSDWRKVYNTEPLSGMGTPEQKKLVLGGEVCMWGEYVDNTNLESRLWPRASAAAERLWSN 499 (542)
T ss_pred ccCceEEEeccceEeeccccCCChhheeeccccccCCCHHHhhheecceeeeehhhccccccccccccchhHHHHHhhcc
Confidence 999999999999999964 578999999999999998888999999999999999999999999999999999999995
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCCCc
Q 008821 501 REAISTGNITLTALPRLHYFRCLLNRRGVQAAPVLNKYAREPPIGPGSCY 550 (552)
Q Consensus 501 ~~~~~~~~~~~~~~~Rl~~~~~~l~~~gi~~~p~~~~~~~~~~~~pg~c~ 550 (552)
++.. ++.++.+||..|||||.+|||.++|++|.||.. ++|.|.
T Consensus 500 ~~~~----~~~~A~~Rl~~~RcrLv~RGi~A~p~~p~~C~~---~~~~c~ 542 (542)
T KOG2499|consen 500 KKVS----RLLDAYPRLHLFRCRLVARGIGAQPVQPGWCLQ---EEGECP 542 (542)
T ss_pred cccc----hHHHHHHHHHHHHHHHHhcCCCcCCCCCccccc---CCCCCC
Confidence 4443 689999999999999999999999999998776 789984
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=1.9e-88 Score=710.53 Aligned_cols=329 Identities=46% Similarity=0.836 Sum_probs=305.7
Q ss_pred CccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCCCCCCCCCHHHHHHHHHHHH
Q 008821 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHEIVSFAK 274 (552)
Q Consensus 196 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~~~~~~YT~~ei~elv~yA~ 274 (552)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ .|+|+.+++||++|+++||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HcCCEEEEeecCCCccchHhhhCCCCCCCC----------CCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCc
Q 008821 275 MRGINVMAEVDVPGHAESWGAGYPNLWPSP----------SCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEV 344 (552)
Q Consensus 275 ~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~----------~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv 344 (552)
+|||+||||||+|||+.+++++||+|.... .+...|||++|+|++|+++|++|++++||++||||||||+
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~ 160 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEV 160 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCC
Confidence 999999999999999999999999984221 1234799999999999999999999999999999999999
Q ss_pred CCcCCCCCHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHhcCCeeeEecccccccCCCCCCCeEEEEeCCCCchHHHHHc
Q 008821 345 NTDCWSSTPHVKKWLRDHKLTAK-EAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGGVCPKAVAK 423 (552)
Q Consensus 345 ~~~~w~~~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~ 423 (552)
...||+++|.|+++|+++|++.. +++.+|++++.++++++|+++++|+|++...+..++++++|+.|++...+.+++++
T Consensus 161 ~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~~~~~~~~iv~~W~~~~~~~~~~~~ 240 (348)
T cd06562 161 NFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGVYLLPKDTIVQVWGGSDELKNVLAA 240 (348)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCCccCCCCeEEEECCCcHHHHHHHHC
Confidence 99999999999999999997665 99999999999999999999999999987543468999999999988888899999
Q ss_pred CCcEEEeCCCceeccCCC-------CcccccccccccCCCCCcCcccceeeeeeeeecCCCCCCcchhchhhhHHHHHHH
Q 008821 424 GFRCIYSNQGFWYLDHLD-------VPWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAER 496 (552)
Q Consensus 424 G~~vI~s~~~~~Yld~~~-------~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~Pr~~a~AE~ 496 (552)
||+||+|+++++|||++. .+|+++|.++|.....++...++|+|+|+|||+|.+++.++++++|||++|+||+
T Consensus 241 G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~a~AE~ 320 (348)
T cd06562 241 GYKVILSSYDFWYLDCGFGGWVGPGNDWCDPYKNWPRIYSGTPEQKKLVLGGEACMWGEQVDDTNLDQRLWPRASALAER 320 (348)
T ss_pred CCCEEEeCCCcEEEeecCCCCCCCCCcHhhhhcCCCCCCCCChhhcccEEEEEEEeeeeeeCccceeehhhhhHHHHHHH
Confidence 999999999999999864 3699999999876554445678999999999999999888999999999999999
Q ss_pred cCCcccccccCCChhhHHHHHHHHHHHHHHcC
Q 008821 497 LWSRREAISTGNITLTALPRLHYFRCLLNRRG 528 (552)
Q Consensus 497 ~W~~~~~~~~~~~~~~~~~Rl~~~~~~l~~~g 528 (552)
+|+++..+ ++.+|.+||..+++||.+||
T Consensus 321 ~W~~~~~~----~~~~f~~Rl~~~~~~l~~~g 348 (348)
T cd06562 321 LWSGPSDT----NLTDAEPRLVEFRCRLVRRG 348 (348)
T ss_pred hhCCCcCC----CHHHHHHHHHHHHHHHHhCc
Confidence 99998875 69999999999999999998
No 3
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.4e-84 Score=669.34 Aligned_cols=299 Identities=36% Similarity=0.730 Sum_probs=277.5
Q ss_pred CccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCCCCCCCCCHHHHHHHHHHHH
Q 008821 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHEIVSFAK 274 (552)
Q Consensus 196 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~~~~~~YT~~ei~elv~yA~ 274 (552)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ +|+ .+++||++|++|||+||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~--~~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKAS--DGLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCC--CCCccCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999 775 568999999999999999
Q ss_pred HcCCEEEEeecCCCccchHhhhCCCCCCCC----------CCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCc
Q 008821 275 MRGINVMAEVDVPGHAESWGAGYPNLWPSP----------SCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEV 344 (552)
Q Consensus 275 ~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~----------~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv 344 (552)
+|||+||||||+|||+.+|+++||+|.... .....|||++|+||+|+++|++|++++||++||||||||+
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~iHiGgDE~ 158 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDEV 158 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHHHhCCCCceEeeccCC
Confidence 999999999999999999999999995321 1134699999999999999999999999999999999999
Q ss_pred CCcCCCCCHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHhcCCeeeEecccccccCCCCCCCeEEEEeCCCCchHHHHHc
Q 008821 345 NTDCWSSTPHVKKWLRDHKLTAK-EAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGGVCPKAVAK 423 (552)
Q Consensus 345 ~~~~w~~~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~ 423 (552)
...||++||.|+++|+++|++.. +++.+|++++.++++++||++++|+|++. ..+|++++|+.|.+.+.+.+++++
T Consensus 159 ~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~---~~l~~~~iv~~W~~~~~~~~~~~~ 235 (311)
T cd06570 159 DPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLH---PDLPKNVVIQSWRGHDSLGEAAKA 235 (311)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeccccc---cCCCCCeEEEEeCCchHHHHHHHC
Confidence 99999999999999999998765 89999999999999999999999999875 368999999999988788899999
Q ss_pred CCcEEEeCCCceeccCCCCcccccccccccCCCCCcCcccceeeeeeeeecCCCCCCcchhchhhhHHHHHHHcCCcccc
Q 008821 424 GFRCIYSNQGFWYLDHLDVPWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREA 503 (552)
Q Consensus 424 G~~vI~s~~~~~Yld~~~~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~Pr~~a~AE~~W~~~~~ 503 (552)
||++|+|++ +|||+.+ +|..+|+++|. |+|+|+|||+|.++..++++++|||++|+||++|++++.
T Consensus 236 G~~vI~s~~--~YlD~~~-~~~~~y~~~p~-----------ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~~~~ 301 (311)
T cd06570 236 GYQGILSTG--YYIDQPQ-PAAYHYRVDPM-----------ILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSAQDV 301 (311)
T ss_pred CCCEEEech--hheeCCC-chhheeCCCCc-----------EEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCCCcC
Confidence 999999984 8999875 57788988875 999999999999988889999999999999999999887
Q ss_pred cccCCChhhHHHHH
Q 008821 504 ISTGNITLTALPRL 517 (552)
Q Consensus 504 ~~~~~~~~~~~~Rl 517 (552)
+ ++++|.+||
T Consensus 302 ~----~~~~~~~Rl 311 (311)
T cd06570 302 R----DEDDMYRRL 311 (311)
T ss_pred C----CHHHHHhhC
Confidence 6 689999886
No 4
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1e-84 Score=685.20 Aligned_cols=315 Identities=34% Similarity=0.604 Sum_probs=290.7
Q ss_pred CccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCCCC----------------C
Q 008821 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSK----------------W 258 (552)
Q Consensus 196 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~~~----------------~ 258 (552)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ .|+++. +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 89999999999999999999999999999999999999999999999999999999 788764 5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCC----------CCCCCCCCCChhHHHHHHHHHHHH
Q 008821 259 ERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSP----------SCREPLDVSKNFTFEVISGILSDL 328 (552)
Q Consensus 259 ~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~----------~~~~~l~~~~~~t~~fl~~vl~E~ 328 (552)
++||++|+++||+||++|||+||||||+|||+.+++++||+|.... ....+|||++|++++|+++|++|+
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999995321 124579999999999999999999
Q ss_pred HhhCCCCeeeeCCCCcCCcCCCCCHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHhcCCeeeEecccccccCCCCCCCeE
Q 008821 329 RKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAK-EAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTV 407 (552)
Q Consensus 329 ~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~~l~~~~i 407 (552)
+++||++||||||||+...||++||.|+++|+++|++.. +++.+|++++.++++++|+++++|+|++.. .++++++
T Consensus 161 ~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~---~l~~~~i 237 (357)
T cd06563 161 AELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEG---GLPPNAT 237 (357)
T ss_pred HHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeeccccc---CCCCCcE
Confidence 999999999999999999999999999999999998665 899999999999999999999999999764 3899999
Q ss_pred EEEeCCCCchHHHHHcCCcEEEeCCCceeccCCC-------------CcccccccccccCCCCCcCcccceeeeeeeeec
Q 008821 408 VHNWLGGGVCPKAVAKGFRCIYSNQGFWYLDHLD-------------VPWDEVYTAEPLEGISDPSNQELVLGGEVCMWG 474 (552)
Q Consensus 408 v~~W~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~-------------~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~ 474 (552)
|++|++...+.+++++||++|+|++.++|||+.. .+|+++|+++|......++.+++|+|+|+|||+
T Consensus 238 v~~W~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~~~~~~~ilG~~~~lW~ 317 (357)
T cd06563 238 VMSWRGEDGGIKAAKQGYDVIMSPGQYLYLDYAQSKGPDEPASWAGFNTLEKVYSFEPVPGGLTPEQAKRILGVQANLWT 317 (357)
T ss_pred EEECCCchHHHHHHHCCCCEEEeCCCceEEecCCCCCCCCCccccCCCCHHHHhcCCCCCCCCChhHhcCEEEEEEEecc
Confidence 9999998888899999999999999999999863 358899999998776655678899999999999
Q ss_pred CCCCC-CcchhchhhhHHHHHHHcCCcccccccCCChhhHHHHH
Q 008821 475 ETADT-SDIHQTIWPRAAAAAERLWSRREAISTGNITLTALPRL 517 (552)
Q Consensus 475 E~~~~-~~~~~~~~Pr~~a~AE~~W~~~~~~~~~~~~~~~~~Rl 517 (552)
|.+.. +.+++++|||++|+||++|++++.+ +|++|..||
T Consensus 318 E~~~~~~~~~~~~~PR~~a~AE~~W~~~~~~----~~~~f~~rl 357 (357)
T cd06563 318 EYIPTPERVEYMAFPRLLALAEVAWTPPEKK----DWEDFRKRL 357 (357)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCCccCC----CHHHHHhhC
Confidence 99954 5799999999999999999998865 699999886
No 5
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.7e-82 Score=682.17 Aligned_cols=313 Identities=27% Similarity=0.475 Sum_probs=276.2
Q ss_pred cCCCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCCC--------------
Q 008821 192 DKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYS-------------- 256 (552)
Q Consensus 192 D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~~-------------- 256 (552)
|+|||+|||+|||+||||+|+++||++||.||.+|||+||||||||||||||+++||+|+ .|+++
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999 78762
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhh----CCCCCCCC-------------------
Q 008821 257 ---------KWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAG----YPNLWPSP------------------- 304 (552)
Q Consensus 257 ---------~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~----yp~l~~~~------------------- 304 (552)
.+++||++||++||+||++|||+||||||+|||+.+++++ ||+|...+
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 2578999999999999999999999999999999999876 88873211
Q ss_pred -----CCCCCCCCCChhHHHHHHHHHHHHHhhC-----CCCeeeeCCCCcCCcCCCCCHHHH--HHHHHcCCChH-HHHH
Q 008821 305 -----SCREPLDVSKNFTFEVISGILSDLRKIF-----PFELFHLGGDEVNTDCWSSTPHVK--KWLRDHKLTAK-EAYQ 371 (552)
Q Consensus 305 -----~~~~~l~~~~~~t~~fl~~vl~E~~~lF-----~~~~iHiGgDEv~~~~w~~~p~~~--~~~~~~g~~~~-~l~~ 371 (552)
....+|||++|+||+|+++||+|++++| |++||||||||+...||++||.|+ ++|+++|++.. +++.
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKD 240 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 0134799999999999999999999999 679999999999999999999999 99999998765 9999
Q ss_pred HHHHHHHHHHHhcCCeeeEecccccccCC-----CCCCCeEEEEeCCC-----CchHHHHHcCCcEEEeCCCceeccCCC
Q 008821 372 YFVLTAQKIAISKNWTPVNWEETFNSFAS-----NLNPRTVVHNWLGG-----GVCPKAVAKGFRCIYSNQGFWYLDHLD 441 (552)
Q Consensus 372 ~f~~~~~~~~~~~G~~~~~W~d~~~~~~~-----~l~~~~iv~~W~~~-----~~~~~~~~~G~~vI~s~~~~~Yld~~~ 441 (552)
+|++++.++++++|+++++|+|++...+. .++++++|++|++. ..+.+++++||+||+|++.++|||+.+
T Consensus 241 ~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~~~~~~~~~~~v~~W~~~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~ 320 (445)
T cd06569 241 YFFERVSKILKAHGITLAGWEDGLLGKDTTNVDGFATPYVWNNVWGWGYWGGEDRAYKLANKGYDVVLSNATNLYFDFPY 320 (445)
T ss_pred HHHHHHHHHHHHcCCeEEEecccccCCCcccccccCCCCeEEEEccCCcccccHHHHHHHHCCCCEEEeCCCcEEEecCC
Confidence 99999999999999999999999875432 36789999999752 457789999999999999999999852
Q ss_pred ---------------CcccccccccccCC----------------------CCCcCcccceeeeeeeeecCCCCC-Ccch
Q 008821 442 ---------------VPWDEVYTAEPLEG----------------------ISDPSNQELVLGGEVCMWGETADT-SDIH 483 (552)
Q Consensus 442 ---------------~~w~~~Y~~~p~~~----------------------~~~~~~~~~ilG~~~~lW~E~~~~-~~~~ 483 (552)
.+|+++|+++|... ...++.+++|+|+|+|||+|+++. +.++
T Consensus 321 ~~~~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~e~~lWsE~v~~~~~l~ 400 (445)
T cd06569 321 EKHPEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVRLTLEGPKNILGLQGQLWSETIRTDEQLE 400 (445)
T ss_pred CCCCCcCCcccccCCCCHHHhhccCCchhhccchhhcccCccccccccccccCChhHhcceeEEEEeeeccccCCHHHhH
Confidence 34567788888531 012345789999999999999975 5799
Q ss_pred hchhhhHHHHHHHcCCccccc
Q 008821 484 QTIWPRAAAAAERLWSRREAI 504 (552)
Q Consensus 484 ~~~~Pr~~a~AE~~W~~~~~~ 504 (552)
+++|||++|+||++||+....
T Consensus 401 ~~~~PR~~A~AE~~Ws~~~~~ 421 (445)
T cd06569 401 YMVFPRLLALAERAWHKAPWE 421 (445)
T ss_pred HHhhhHHHHHHHHHhcCCccc
Confidence 999999999999999997764
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=4.5e-80 Score=641.64 Aligned_cols=296 Identities=34% Similarity=0.534 Sum_probs=267.1
Q ss_pred CccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCC-----CCCCCCCHHHHHHH
Q 008821 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAY-----SKWERYTVEDAHEI 269 (552)
Q Consensus 196 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~-----~~~~~YT~~ei~el 269 (552)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ .|++ +.+++||++|++||
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 7765 35689999999999
Q ss_pred HHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCC----------CCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeee
Q 008821 270 VSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPS----------CREPLDVSKNFTFEVISGILSDLRKIFPFELFHL 339 (552)
Q Consensus 270 v~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~----------~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHi 339 (552)
|+||++|||+||||||+|||+.+++++||+|...+. +..+|||++|++++|+++|++|++++||+++|||
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHi 160 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHI 160 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999999999999999999999954221 1347999999999999999999999999999999
Q ss_pred CCCCcCCcCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCeeeEecccccccCCCCCCCeEEEEeCCC---Cc
Q 008821 340 GGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGG---GV 416 (552)
Q Consensus 340 GgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~~l~~~~iv~~W~~~---~~ 416 (552)
||||+... ..++|.+|++++.++++++||++++|+|++. ..++++++|++|++. ..
T Consensus 161 GgDE~~~~------------------~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~---~~l~~~~iv~~W~~~~~~~~ 219 (329)
T cd06568 161 GGDEAHST------------------PHDDYAYFVNRVRAIVAKYGKTPVGWQEIAR---ADLPAGTVAQYWSDRAPDAD 219 (329)
T ss_pred ecccCCCC------------------chHHHHHHHHHHHHHHHHCCCeEEEECcccc---cCCCCCeEEEECCCCCCchH
Confidence 99999753 2367899999999999999999999999875 358999999999986 57
Q ss_pred hHHHHHcCCcEEEeCCCceeccCCC-------------CcccccccccccCCCCCcCcccceeeeeeeeecCCCCC-Ccc
Q 008821 417 CPKAVAKGFRCIYSNQGFWYLDHLD-------------VPWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADT-SDI 482 (552)
Q Consensus 417 ~~~~~~~G~~vI~s~~~~~Yld~~~-------------~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~-~~~ 482 (552)
+.+++++||++|+|+++++|||+.. .+|+++|+++|...... +.+++|+|+|+|||+|.+++ +++
T Consensus 220 ~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~-~~~~~ilG~~~~lW~E~~~~~~~~ 298 (329)
T cd06568 220 AAAALDKGAKVILSPADKAYLDMKYDADSPLGLTWAGPVEVREAYDWDPAAYGPG-VPDEAILGVEAPLWTETIRNLDDL 298 (329)
T ss_pred HHHHHHCCCCEEEeCCCcEEEecCCCCCCCCCcccCCCCCHHHHeeeCCCCCCCc-chhhCEEEEEEeecccccCCHHHH
Confidence 8899999999999999999999852 26888999999865543 45779999999999999986 479
Q ss_pred hhchhhhHHHHHHHcCCcccccccCCChhhHHHHH
Q 008821 483 HQTIWPRAAAAAERLWSRREAISTGNITLTALPRL 517 (552)
Q Consensus 483 ~~~~~Pr~~a~AE~~W~~~~~~~~~~~~~~~~~Rl 517 (552)
++++|||++|+||++|++++.+ +|++|..||
T Consensus 299 ~~~~~PR~~a~AE~~Ws~~~~~----~~~~f~~rl 329 (329)
T cd06568 299 EYMAFPRLAGVAEIGWSPQEAR----DWDDYKVRL 329 (329)
T ss_pred HHHHHhHHHHHHHHHhCCCcCC----CHHHHHhhC
Confidence 9999999999999999998875 689999886
No 7
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-76 Score=629.76 Aligned_cols=393 Identities=28% Similarity=0.458 Sum_probs=345.0
Q ss_pred CCCCeEEEEecCCCccceeeEEEEEcCchhhhHHHHHHHHhhc-cCCCCceeEeeccceEEEcCCCCccccceecCCCCC
Q 008821 131 VDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCS-FDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHY 209 (552)
Q Consensus 131 ~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~glqTL~QLl~-~~~~~~~~~i~~~~~~I~D~P~f~~RG~mlD~aR~f 209 (552)
..|+|+|.++..+ |+|+|.+.+|+|||++||.||+. .+...+.+.+|. ++|.|+|||.|||+|+|+||||
T Consensus 204 ~~e~y~la~~d~a-------i~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p~--~~I~DaPRf~~rGllvDvaRqf 274 (732)
T COG3525 204 GEEAYRLAINDKA-------IKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFPA--VTIVDAPRFAWRGLLVDVARQF 274 (732)
T ss_pred cchhheeecccce-------eEEeeccccchhhhHHHHHhhhccccccCCCeeeee--eecccCcccchhhhhHhhhhhc
Confidence 4899999999987 89999999999999999999998 444455566775 4799999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCCC----------------CCCCCCHHHHHHHHHH
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYS----------------KWERYTVEDAHEIVSF 272 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~~----------------~~~~YT~~ei~elv~y 272 (552)
+|++.+|++||.|+.+|||+|||||+||||||+||++||+|| .|+.+ .+++||++++++|++|
T Consensus 275 ~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~y 354 (732)
T COG3525 275 HSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAY 354 (732)
T ss_pred CCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 66632 3589999999999999
Q ss_pred HHHcCCEEEEeecCCCccchHhhhCCCCCC-----CC------CCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCC
Q 008821 273 AKMRGINVMAEVDVPGHAESWGAGYPNLWP-----SP------SCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGG 341 (552)
Q Consensus 273 A~~rgI~VIPEiD~PGH~~a~~~~yp~l~~-----~~------~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGg 341 (552)
|++|+|+||||||+|||+++.+.+||++.. +. .....||++-+-+++|+++|++|+.++||+.+|||||
T Consensus 355 Asar~ItviPeiD~PgHa~aav~A~p~~~l~~a~~ds~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiGg 434 (732)
T COG3525 355 ASARQITVIPEIDMPGHARAAVVAYPDLNLGRADPDSYDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIGG 434 (732)
T ss_pred HhhcCceecCCcCCcchhhhhhhhCccccccccCCCcchhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEecc
Confidence 999999999999999999999999996532 11 1123688999999999999999999999999999999
Q ss_pred CCcCCcCCCC-CHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHhcCCeeeEecccccccCC---CCCCCeEEEEeCCCCc
Q 008821 342 DEVNTDCWSS-TPHVKKWLRDHKLTAK-EAYQYFVLTAQKIAISKNWTPVNWEETFNSFAS---NLNPRTVVHNWLGGGV 416 (552)
Q Consensus 342 DEv~~~~w~~-~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~---~l~~~~iv~~W~~~~~ 416 (552)
||+....|.. +|.|++.|++.|.+.. +++.+|++++.+++.++|++.++|+|.+..... -+-+++.|++|.+.+.
T Consensus 435 DE~~~~qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~~~~~~~~~t~~~~vm~W~~~~~ 514 (732)
T COG3525 435 DEFIDGQWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHGGDVNGTALTANVTVMSWYGKDK 514 (732)
T ss_pred chhccCeeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhccCCCccccccCceEEEEEecchh
Confidence 9999999999 9999999999998766 899999999999999999999999999864211 1227999999999988
Q ss_pred hHHHHHcCCcEEEeCCCceeccCCC--------Ccc------cc-cccccccCCCCC-cCcccceeeeeeeeecCCCCCC
Q 008821 417 CPKAVAKGFRCIYSNQGFWYLDHLD--------VPW------DE-VYTAEPLEGISD-PSNQELVLGGEVCMWGETADTS 480 (552)
Q Consensus 417 ~~~~~~~G~~vI~s~~~~~Yld~~~--------~~w------~~-~Y~~~p~~~~~~-~~~~~~ilG~~~~lW~E~~~~~ 480 (552)
...++++||++|+++...+|+|+.+ ..| .+ .|.+++...... ++..++++|.|+|+|+|++...
T Consensus 515 ai~~akqg~dvv~tp~~~~ylD~~q~~~peepg~~~a~t~~l~r~~y~~~~~g~~~~~de~~k~~~G~q~~lWse~~~~~ 594 (732)
T COG3525 515 AIELAKQGYDVVLTPAQFVYLDMLQIAAPEEPGYSWATTTPLERNKYAYDFAGKQPINDELAKRILGVQAALWSEHIQTR 594 (732)
T ss_pred hHHHHhhcccccccchhhhhhhhhcccccccCCCccccccccchhhhhhcccCcccCChHHhhhhhhhHHHHHHHHhhhh
Confidence 8999999999999999999999864 234 22 566665433332 5678899999999999999764
Q ss_pred -cchhchhhhHHHHHHHcCCcccccccCCChhhHHHHHHHHHHHHHHcCCCCCCCCc
Q 008821 481 -DIHQTIWPRAAAAAERLWSRREAISTGNITLTALPRLHYFRCLLNRRGVQAAPVLN 536 (552)
Q Consensus 481 -~~~~~~~Pr~~a~AE~~W~~~~~~~~~~~~~~~~~Rl~~~~~~l~~~gi~~~p~~~ 536 (552)
.+++++|||++|+|||+|++.... ||..+..|+..+..+++..+|.+.+.+.
T Consensus 595 ~~f~~~vfprl~a~aEraw~p~a~~----Dw~~~~~r~~~~~~l~~~~~~~~~~~w~ 647 (732)
T COG3525 595 GRFEYMVFPRLAAAAERAWTPMAFN----DWLYYLDRLSAQLPLLVLISIPYNAWWG 647 (732)
T ss_pred hHHHHHhcchHHHHHHhhCCchhhc----chhhhhhhcchhcchhhhhccccccccc
Confidence 689999999999999999998775 7999999999999999998988766543
No 8
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=1.2e-75 Score=615.24 Aligned_cols=306 Identities=40% Similarity=0.803 Sum_probs=264.1
Q ss_pred CccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCCCCCC---CCCHHHHHHHHH
Q 008821 196 FAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWE---RYTVEDAHEIVS 271 (552)
Q Consensus 196 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~~~~~---~YT~~ei~elv~ 271 (552)
|+|||+|||+||||+|+++||++||.||.+|||+|||||+|+||||+|++++|+|+ .|+++... +||++||++||+
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999 88877654 999999999999
Q ss_pred HHHHcCCEEEEeecCCCccchHhhhCCCCCCC----C------CC----CCCCCCCChhHHHHHHHHHHHHHhhCCCCee
Q 008821 272 FAKMRGINVMAEVDVPGHAESWGAGYPNLWPS----P------SC----REPLDVSKNFTFEVISGILSDLRKIFPFELF 337 (552)
Q Consensus 272 yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~----~------~~----~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~i 337 (552)
||++|||+||||||+|||+.+++++||++... . .+ ...|||++|++++|+++|++|++++||+++|
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~i 160 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYI 160 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeE
Confidence 99999999999999999999999999988542 0 11 1369999999999999999999999999999
Q ss_pred eeCCCCcCCcCCCCCHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHhcCCeeeEecccccccC--CCCCCCeEEEEeCCC
Q 008821 338 HLGGDEVNTDCWSSTPHVKKWLRDHKLTAK-EAYQYFVLTAQKIAISKNWTPVNWEETFNSFA--SNLNPRTVVHNWLGG 414 (552)
Q Consensus 338 HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~--~~l~~~~iv~~W~~~ 414 (552)
||||||++..||+++|.|+++|+++|++.. +++.+|++++.++++++|+++++|+|++...+ ..++++++|++|++.
T Consensus 161 HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~~~i~~W~~~ 240 (351)
T PF00728_consen 161 HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPDASLLPKDVIIQVWNYD 240 (351)
T ss_dssp EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCCGHCSCTTEEEEEESST
T ss_pred EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCccccccCCceEEEeecc
Confidence 999999999999999999999999998654 99999999999999999999999999998654 358899999999984
Q ss_pred ---CchHHHHHcCCcEEEeCCCceeccCCCCc--------------ccccccccccCCCCC-----cCcc-cceeeeeee
Q 008821 415 ---GVCPKAVAKGFRCIYSNQGFWYLDHLDVP--------------WDEVYTAEPLEGISD-----PSNQ-ELVLGGEVC 471 (552)
Q Consensus 415 ---~~~~~~~~~G~~vI~s~~~~~Yld~~~~~--------------w~~~Y~~~p~~~~~~-----~~~~-~~ilG~~~~ 471 (552)
..+..++++||++|+++.+.+|+|+.... |..+|.++|...... +... ++|+|+++|
T Consensus 241 ~~~~~~~~~~~~g~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~ 320 (351)
T PF00728_consen 241 WGPASAQEFAKKGYKVINSPSDYLYLDPGQSPWPEEDGNYWAPFNTWSDFYNWDPAYFNTNSTQIDPAQKSERILGGEAA 320 (351)
T ss_dssp THHHHHHHHHHTTHEEEESTHGTGBTTTTSSTTTSSSSBHTTSTHHHHHHHHHHHCHCTTTCSTTTTHHHCCCEEEEEEE
T ss_pred ccchhhhHHHHhcCcEEEcCCCceEEccCcCCCCccCcccccccccccccccccccccccccchhhhhcccCCCceeEEE
Confidence 45678999999999999999999986543 345677777644332 2222 589999999
Q ss_pred eecCCC-CCCcchhchhhhHHHHHHHcCCcc
Q 008821 472 MWGETA-DTSDIHQTIWPRAAAAAERLWSRR 501 (552)
Q Consensus 472 lW~E~~-~~~~~~~~~~Pr~~a~AE~~W~~~ 501 (552)
+|+|.+ +.+++++++|||++|+||++|++.
T Consensus 321 ~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws~~ 351 (351)
T PF00728_consen 321 LWSENIRDEEDLDYRLWPRLAALAERLWSPQ 351 (351)
T ss_dssp EETTTTTSHHHHHHHHTTHHHHHHHHHHSS-
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999 456799999999999999999973
No 9
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=6.1e-74 Score=591.00 Aligned_cols=284 Identities=32% Similarity=0.626 Sum_probs=254.5
Q ss_pred cccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-cc----CCCCCCCCCHHHHHHHHHH
Q 008821 198 FRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KG----AYSKWERYTVEDAHEIVSF 272 (552)
Q Consensus 198 ~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~G----a~~~~~~YT~~ei~elv~y 272 (552)
|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ +| +++.+++||++|++|||+|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999 66 4567889999999999999
Q ss_pred HHHcCCEEEEeecCCCccchHhhhCCCCCCC-------CCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcC
Q 008821 273 AKMRGINVMAEVDVPGHAESWGAGYPNLWPS-------PSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVN 345 (552)
Q Consensus 273 A~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~-------~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~ 345 (552)
|++|||+||||||+|||+.+++++||++... ......|||++|++++|+++|++|++++||+++|||||||+.
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~~ 160 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEAH 160 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceecC
Confidence 9999999999999999999999999998421 112458999999999999999999999999999999999997
Q ss_pred CcCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCeeeEecccccccCCCCCCCeEEEEeCCC-----CchHHH
Q 008821 346 TDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGG-----GVCPKA 420 (552)
Q Consensus 346 ~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~~l~~~~iv~~W~~~-----~~~~~~ 420 (552)
.. .+..+++.+|++++.++++++|+++++|+|++... ..++++++|++|.+. ..+.++
T Consensus 161 ~~----------------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~-~~l~~~~ii~~W~~~~~~~~~~~~~~ 223 (303)
T cd02742 161 FK----------------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKK-MKLKEDVIVQYWDYDGDKYNVELPEA 223 (303)
T ss_pred CC----------------CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCC-CCCCCCeEEEEccCCCCcchHHHHHH
Confidence 64 12348999999999999999999999999998642 368999999999886 467889
Q ss_pred HHcCCcEEEeCCCceec-cCCCCcccccccccccCCCCCcCcccceeeeeeeeecCCCCCC-cchhchhhhHHHHHHHcC
Q 008821 421 VAKGFRCIYSNQGFWYL-DHLDVPWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTS-DIHQTIWPRAAAAAERLW 498 (552)
Q Consensus 421 ~~~G~~vI~s~~~~~Yl-d~~~~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~-~~~~~~~Pr~~a~AE~~W 498 (552)
+++||++|+|++.++|+ .....+|+++|.++|.... .++.+++|+|+++|+|+|.++.. ++++++|||++|+||++|
T Consensus 224 ~~~G~~vi~s~~~yly~~~~~~~~~~~~y~~~p~~~~-~~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE~~W 302 (303)
T cd02742 224 AAKGFPVILSNGYYLDIFIDGALDARKVYKNDPLAVP-TPQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAERSW 302 (303)
T ss_pred HHCCCCEEEeCCceeeeeCCCCCCHHHHhCCCCCCCC-CcccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999887787 2334689999999987643 34567899999999999999976 799999999999999999
Q ss_pred C
Q 008821 499 S 499 (552)
Q Consensus 499 ~ 499 (552)
|
T Consensus 303 s 303 (303)
T cd02742 303 S 303 (303)
T ss_pred C
Confidence 7
No 10
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.3e-70 Score=570.10 Aligned_cols=286 Identities=26% Similarity=0.476 Sum_probs=250.9
Q ss_pred ccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccC---------------CCCCCC
Q 008821 197 AFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGA---------------YSKWER 260 (552)
Q Consensus 197 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga---------------~~~~~~ 260 (552)
.+||+|||+||||+|+++||++||.||.+|||+||||||| +||++++.+|+++ .|+ .+.+++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 4799999999999999999999999999999999999999 7999999999998 333 346789
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCC----CCCCCCCCCCChhHHHHHHHHHHHHHhhCC--C
Q 008821 261 YTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPS----PSCREPLDVSKNFTFEVISGILSDLRKIFP--F 334 (552)
Q Consensus 261 YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~----~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~--~ 334 (552)
||++|+|+||+||++|||+||||||+|||+.+|+++||++... ......|||++|++++|+++|++|++++|| +
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~ 158 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKS 158 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999998543 234568999999999999999999999999 9
Q ss_pred CeeeeCCCCcCCcCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCeeeEecccccccC--CCCCCCeEEEEeC
Q 008821 335 ELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFA--SNLNPRTVVHNWL 412 (552)
Q Consensus 335 ~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~--~~l~~~~iv~~W~ 412 (552)
+||||||||+... .+..++|.+|++++.++++++|+++++|+|++...+ ..++++++|++|+
T Consensus 159 ~~~HiGgDE~~~~----------------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~~~~l~~~~iv~~W~ 222 (326)
T cd06564 159 DTVHIGADEYAGD----------------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGDTTVLSKDVIINYWS 222 (326)
T ss_pred CEEEecccccccc----------------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCCcccCCCCeEEEeCC
Confidence 9999999999864 124588999999999999999999999999987544 5799999999999
Q ss_pred CC-CchHHHHHcCCcEEEeCCCceeccCCCC------cccccccccccCCC-----CCcCcccceeeeeeeeecCCCCC-
Q 008821 413 GG-GVCPKAVAKGFRCIYSNQGFWYLDHLDV------PWDEVYTAEPLEGI-----SDPSNQELVLGGEVCMWGETADT- 479 (552)
Q Consensus 413 ~~-~~~~~~~~~G~~vI~s~~~~~Yld~~~~------~w~~~Y~~~p~~~~-----~~~~~~~~ilG~~~~lW~E~~~~- 479 (552)
+. ..+.+++++||+||+|++.++|+|+.+. +|+++|.+.+.... ..++.+++|+|+++|||+|.++.
T Consensus 223 ~~~~~~~~~~~~G~~vI~s~~~~~Y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ilG~~~~lW~E~~~~~ 302 (326)
T cd06564 223 YGWADPKELLNKGYKIINTNDGYLYIVPGAGYYGDYLNTEDIYNNWTPNKFGGTNATLPEGDPQILGGMFAIWNDDSDAG 302 (326)
T ss_pred CcccCHHHHHHCCCcEEEeCCCcEEEeCCCccCCCccCHHHHHhcCCccccCCCCccCCCCCCCcchhheeeecCCCCcC
Confidence 86 5688899999999999999999997543 36777876543221 22456789999999999999963
Q ss_pred ---CcchhchhhhHHHHHHHcCCc
Q 008821 480 ---SDIHQTIWPRAAAAAERLWSR 500 (552)
Q Consensus 480 ---~~~~~~~~Pr~~a~AE~~W~~ 500 (552)
.++++++|||++|+||++|++
T Consensus 303 ~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 303 ISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCC
Confidence 468999999999999999985
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=4.5e-52 Score=427.62 Aligned_cols=280 Identities=20% Similarity=0.239 Sum_probs=225.4
Q ss_pred cccceecCCC-CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 008821 198 FRGLLIDTSR-HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (552)
Q Consensus 198 ~RG~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~r 276 (552)
+||+|||+|| +|+++++||++||.||.+|+|+||||++|+ |++ +++|+++. .+++||++|++||++||++|
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f~~--~~~p~~~~----~~~~yT~~ei~ei~~yA~~~ 72 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--FPY--EGEPEVGR----MRGAYTKEEIREIDDYAAEL 72 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--eec--CCCccccc----CCCCcCHHHHHHHHHHHHHc
Confidence 5999999999 999999999999999999999999999995 544 58999862 36789999999999999999
Q ss_pred CCEEEEeecCCCccchHhhh--CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCcCCCCCHH
Q 008821 277 GINVMAEVDVPGHAESWGAG--YPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPH 354 (552)
Q Consensus 277 gI~VIPEiD~PGH~~a~~~~--yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~~p~ 354 (552)
||+||||||+|||+.++++. |.+++..+.....|||++|+|++|+++|++|++++||+++|||||||+...+ .++.
T Consensus 73 gI~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g--~~~~ 150 (301)
T cd06565 73 GIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLG--RGRS 150 (301)
T ss_pred CCEEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccC--CCHH
Confidence 99999999999999999873 3344444444578999999999999999999999999999999999998753 3444
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCeeeEecccccc---cC---CCCCCCeEEEEeCCCCc-------hHHHH
Q 008821 355 VKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNS---FA---SNLNPRTVVHNWLGGGV-------CPKAV 421 (552)
Q Consensus 355 ~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~---~~---~~l~~~~iv~~W~~~~~-------~~~~~ 421 (552)
+++. ...+..++|..|++++.++++++|+++++|+|++.. .+ ..||+++++++|.+... ...+.
T Consensus 151 ~~~~---~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~l~~~v~~~~W~y~~~~~~~~~~~~~~~ 227 (301)
T cd06565 151 LRKH---GNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEALSGLPKLVTPVVWDYYADLDEHDRPIGLWK 227 (301)
T ss_pred HHHh---cCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHHHhCCCCCeEEEEecCcCCcchhhHhHHHHH
Confidence 4432 334456999999999999999999999999999875 22 47999999999987542 33455
Q ss_pred HcCCcEEEeCCCceeccCCCCccccccccc--ccCCCC---CcCcccceeeeeeeeecCCCCCCcchhchhhhHHHHHHH
Q 008821 422 AKGFRCIYSNQGFWYLDHLDVPWDEVYTAE--PLEGIS---DPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAER 496 (552)
Q Consensus 422 ~~G~~vI~s~~~~~Yld~~~~~w~~~Y~~~--p~~~~~---~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~Pr~~a~AE~ 496 (552)
+.|...+++++.. .|.+++... -+.++. ....+..+.|...+.|+|...... ...++|.+++.||.
T Consensus 228 ~~~~~~~~~~g~~--------~w~~~~~~~~~~~~n~~~~~~~~~~~~~~G~~~T~W~d~g~~~~-~~~~~p~~~~~~~~ 298 (301)
T cd06565 228 KYGSVFAVAWGAS--------AWKGATPPNDKHLENIKSWLKAAKKNGVQGILLTGWGDYGHEAV-LCELLPGLIPSLAL 298 (301)
T ss_pred HhCCCceEeeeec--------hhccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCccc-HHHHHHHHHHHHHH
Confidence 6777777777653 565554210 011111 123466799999999999977654 47789999999999
Q ss_pred cCC
Q 008821 497 LWS 499 (552)
Q Consensus 497 ~W~ 499 (552)
.|+
T Consensus 299 ~~~ 301 (301)
T cd06565 299 ALG 301 (301)
T ss_pred hcC
Confidence 985
No 12
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=99.63 E-value=3e-15 Score=134.27 Aligned_cols=123 Identities=22% Similarity=0.229 Sum_probs=78.3
Q ss_pred CceeecccEEEEcCCeEEECCCcEEEEcCCCchHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCCcccceeEE
Q 008821 39 AYIWPLPAQFSSGNDTLSVDPALCLSVSGKGSGLKIVEEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSRGFDIGTLKI 118 (552)
Q Consensus 39 ~~liP~P~~v~~~~g~~~l~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (552)
+.|||.|++++..+|.|.|+.+++|.+.... . .++.+.+.+.+....|.++. .. . ......|
T Consensus 2 ~~iiP~P~~~~~~~g~~~l~~~~~i~~~~~~--~---~~~~~~l~~~l~~~~g~~~~--------~~---~--~~~~~~i 63 (124)
T PF02838_consen 2 PSIIPQPQSITLTGGTFTLPQSTKIVVDDPE--L---KAAAERLQDILKRLTGISLS--------SS---G--SPNKIDI 63 (124)
T ss_dssp ---SS--SEEEEEEEEEEETTTEEEEETTCS--H---HHHHHHHHHHHHHHHTECCC--------EC---S--ETTSEEE
T ss_pred CcEEccccEEEECCCEEEECCCcEEEECCcc--c---HHHHHHHHHHHHHHhCCccc--------cc---C--CCCCceE
Confidence 6799999999999999999999999987521 1 22223333333334444321 00 0 1112344
Q ss_pred EEecCcccccCCCCCCeEEEEecCCCccceeeEEEEEcCchhhhHHHHHHHHhhccCCCCceeEeeccceEEEcC
Q 008821 119 VVHSDNEELQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDK 193 (552)
Q Consensus 119 ~~~~~~~~~~~~~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~i~~~~~~I~D~ 193 (552)
.+...+. . ...+|+|+|+|++++ |+|+|++..|+|||+|||+||+....+. .+|++ +|+|+
T Consensus 64 ~~~~~~~-~-~~~~E~Y~L~i~~~~-------I~I~a~~~~G~~yg~qTL~Qll~~~~~~---~lp~~--~I~D~ 124 (124)
T PF02838_consen 64 RLLLDDD-A-GLGEEGYRLSISPKG-------ITIEASDPAGLFYGLQTLRQLLRQSGNG---TLPCV--EIEDY 124 (124)
T ss_dssp EEECTTC-C-TSTTT-EEEEEESSE-------EEEEESSHHHHHHHHHHHHHHSBTCS-C---EEEEE--EEEE-
T ss_pred EEeecCC-C-CCCCcceEEEEECCE-------EEEEEcCchHHHHHHHHHHHHhhccCCC---ccceE--EEEeC
Confidence 4433221 1 236999999999986 9999999999999999999999976422 67864 89996
No 13
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=99.63 E-value=2e-15 Score=136.56 Aligned_cols=122 Identities=47% Similarity=0.739 Sum_probs=79.1
Q ss_pred eeecccEEEEcCCeEEECC-CcEEEEcCCC--chHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCCcccceeE
Q 008821 41 IWPLPAQFSSGNDTLSVDP-ALCLSVSGKG--SGLKIVEEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSRGFDIGTLK 117 (552)
Q Consensus 41 liP~P~~v~~~~g~~~l~~-~~~i~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (552)
|||+|++++.|++.+.|+. ++.+.+.+.. ...++|+++++||.+.++.....+...+.+.... ......+..+.
T Consensus 1 lWP~P~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~r~~~~i~~~~~~~~~~~~~~~~~---~~~~~~l~~l~ 77 (128)
T PF14845_consen 1 LWPKPQSISLGSTVFSLDPSNFKFNFSGSSSNSCSDILQEAIDRYLKLIFKQNPSPCASHSRGSSF---KPKSGYLSSLE 77 (128)
T ss_dssp -SS--SEEEEECEEEEEECCCEEEEEETTTSTTTHHHHHHHHHHHHHHHHT--TS-TT----S--------BE-ECEEEE
T ss_pred CCCCCcEEEECCceEEEchhhEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCCccccc---ccCCCcceEEE
Confidence 7999999999999999988 7888875442 2358999999999999987653332111111000 00112345677
Q ss_pred EEEecCccc--ccCCCCCCeEEEE-ecCCCccceeeEEEEEcCchhhhHHHHHHHHh
Q 008821 118 IVVHSDNEE--LQLGVDESYTLLV-AKNEGLSIIGEATIEANTVYGALRGLETFSQL 171 (552)
Q Consensus 118 i~~~~~~~~--~~~~~~E~Y~L~i-~~~~~~~~~~~i~I~a~~~~G~~~glqTL~QL 171 (552)
|.+...+.. +.++.||+|+|+| +.++ .|+|+|++++|++||||||.||
T Consensus 78 I~v~~~~~~~~l~~~~DESY~L~v~s~~~------~~~I~A~tv~GalrgLETlsQL 128 (128)
T PF14845_consen 78 ITVTSDDEDSELQLGMDESYSLSVPSTNG------QATITANTVWGALRGLETLSQL 128 (128)
T ss_dssp EEESSSSTTSS--TT----EEEEETSSSE------EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEecCCccccCCCCCCCEEEEEecCCc------eEEEEECChhhhhHHHHHHhhC
Confidence 777765544 7888999999999 5543 4999999999999999999997
No 14
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=97.94 E-value=0.0001 Score=76.28 Aligned_cols=174 Identities=18% Similarity=0.266 Sum_probs=102.9
Q ss_pred ccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCH---HHHHHHHHHHHH
Q 008821 199 RGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTV---EDAHEIVSFAKM 275 (552)
Q Consensus 199 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~---~ei~elv~yA~~ 275 (552)
||+.--.-...++.+.-+++|+.|+.+|||++-.-..||.=-| .- .++.|+. +++++|++.|++
T Consensus 1 RGvIEGFYG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDpyhr-------~~------Wre~Yp~~el~~l~~L~~~a~~ 67 (306)
T PF07555_consen 1 RGVIEGFYGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDPYHR-------SK------WREPYPEEELAELKELADAAKA 67 (306)
T ss_dssp EEEEE-SSSS---HHHHHHHHHHHHHTT--EEEE--TT-TTTT-------TT------TTS---HHHHHHHHHHHHHHHH
T ss_pred CCceeCcCCCCCCHHHHHHHHHHHHHcCCceEEECCCCChHHH-------hh------hcccCCHHHHHHHHHHHHHHHH
Confidence 7777777778899999999999999999999999999883111 11 2334554 568999999999
Q ss_pred cCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCcCCCCCHHH
Q 008821 276 RGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHV 355 (552)
Q Consensus 276 rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~ 355 (552)
.||++|--| .||. .++.+.++.++.|..-++++.++- .+.|-|=.|.+...-|...
T Consensus 68 ~~V~Fv~ai-sPg~-------------------~~~~s~~~d~~~L~~K~~ql~~lG-vr~FailfDDi~~~~~~~~--- 123 (306)
T PF07555_consen 68 NGVDFVYAI-SPGL-------------------DICYSSEEDFEALKAKFDQLYDLG-VRSFAILFDDIDGDLWHCD--- 123 (306)
T ss_dssp TT-EEEEEE-BGTT-------------------T--TSHHHHHHHHHHHHHHHHCTT---EEEEE-TS-SSC--TTT---
T ss_pred cCCEEEEEE-Cccc-------------------ccccCcHHHHHHHHHHHHHHHhcC-CCEEEEeecCCCCcccccc---
Confidence 999999999 6664 234558888898988899888873 4556666677664322211
Q ss_pred HHHHHHcC-CChHHHHHHHHHHHHHHHHhcC--Ceee------Eecccc-----cccCCCCCCCeEEEEeCCCC
Q 008821 356 KKWLRDHK-LTAKEAYQYFVLTAQKIAISKN--WTPV------NWEETF-----NSFASNLNPRTVVHNWLGGG 415 (552)
Q Consensus 356 ~~~~~~~g-~~~~~l~~~f~~~~~~~~~~~G--~~~~------~W~d~~-----~~~~~~l~~~~iv~~W~~~~ 415 (552)
+.. ....+.+..++++|.+.+.+.. ..++ .+++.. ...+..||+++.|+ |+|..
T Consensus 124 -----~~~~~~~~~~q~~l~n~v~~~l~~~~~~~~~l~~cPt~Y~~~~~~~~Yl~~l~~~L~~~i~i~-WTG~~ 191 (306)
T PF07555_consen 124 -----KDDFNSLAQAQARLLNRVNKELIKKKGDVKPLIFCPTEYCGDWASPEYLRTLGEQLDPDIQIF-WTGPK 191 (306)
T ss_dssp -----TTT-SCHHHHHHHHHHHHHHHTTTCSSSS--EEEE-SS-SCHHHCCHHHHHHHHHS-TTSEEE-E-CSS
T ss_pred -----ccccchHHHHHHHHHHHHHHHHhccCCCCCCceEEChhhcCCCCChHHHHHHHhhCCCCCEEE-EcCCc
Confidence 011 1234889999999988776432 2221 222221 12234789998887 98864
No 15
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.49 E-value=0.0067 Score=63.28 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=113.0
Q ss_pred cccceecCCCC--CCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccc-ccCCCCCcc--ccCCCCCCCCCHHHHHHHHHH
Q 008821 198 FRGLLIDTSRH--YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL-EVPTYPNLW--KGAYSKWERYTVEDAHEIVSF 272 (552)
Q Consensus 198 ~RG~mlD~aR~--f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rl-e~~~~P~l~--~Ga~~~~~~YT~~ei~elv~y 272 (552)
.||+=|++..+ +...+.+.++|+.|...++|++-++.-- .|-.+ .++-.|... .|. ....-..+=++.+|+.
T Consensus 2 ~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~--~~~~pg~DpL~~~I~e 78 (311)
T PF02638_consen 2 FRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGK--QGKDPGFDPLEFMIEE 78 (311)
T ss_pred eEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCC--CCCCCCccHHHHHHHH
Confidence 58888877653 4468889999999999999998888763 34432 344445321 121 1111235679999999
Q ss_pred HHHcCCEEEEeec--CCCcc-chHhhhCCCC-C---CC----C----CCCCCCCCCChhHHHHHHHHHHHHHhhCCCCee
Q 008821 273 AKMRGINVMAEVD--VPGHA-ESWGAGYPNL-W---PS----P----SCREPLDVSKNFTFEVISGILSDLRKIFPFELF 337 (552)
Q Consensus 273 A~~rgI~VIPEiD--~PGH~-~a~~~~yp~l-~---~~----~----~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~i 337 (552)
|.+|||+|.+=+. +.++. ..+...+|+- . ++ . ...--|||++|++.+|+.+++.|+..-++-.=|
T Consensus 79 aHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGI 158 (311)
T PF02638_consen 79 AHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGI 158 (311)
T ss_pred HHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeE
Confidence 9999999998872 22232 1233445542 1 00 0 111249999999999999999999998887767
Q ss_pred eeCCCCcCC--cCCCCCH-HHHHHHHHcC---CCh-H---------HHHHHHHHHHHHHHHhcC
Q 008821 338 HLGGDEVNT--DCWSSTP-HVKKWLRDHK---LTA-K---------EAYQYFVLTAQKIAISKN 385 (552)
Q Consensus 338 HiGgDEv~~--~~w~~~p-~~~~~~~~~g---~~~-~---------~l~~~f~~~~~~~~~~~G 385 (552)
|+ |.+.. ..++.++ ..+.|.+..| .+. . +--..|++++.+.+++..
T Consensus 159 hl--Ddy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~k 220 (311)
T PF02638_consen 159 HL--DDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIK 220 (311)
T ss_pred Ee--cccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 74 33321 2233233 3445555443 111 1 223466777777776544
No 16
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.38 E-value=0.12 Score=54.01 Aligned_cols=163 Identities=16% Similarity=0.159 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCcc
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHA 290 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~ 290 (552)
.+.+.++|+.+...++|.+.+-+.||.|.=.--...|... .|+. ..+ ..|+++|++.++++||.+|--|=++--.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~---~~~-i~D~~~l~~~l~e~gIY~IARIv~FkD~ 87 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV---KPY-IKDLKALVKKLKEHGIYPIARIVVFKDP 87 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc---ccc-ccCHHHHHHHHHHCCCEEEEEEEEecCh
Confidence 4678899999999999999999999998632212333332 3432 112 4799999999999999999888666422
Q ss_pred chHhhhCCCCCCC---------CCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCcCCCCCHH--HHHHH
Q 008821 291 ESWGAGYPNLWPS---------PSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPH--VKKWL 359 (552)
Q Consensus 291 ~a~~~~yp~l~~~---------~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~~p~--~~~~~ 359 (552)
. ....+|++... .....=+||.++++.+.+-+|-.|.+.+ |-||+... +-..|. ..+.+
T Consensus 88 ~-la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfD-YIRFP~~~~~~~l 157 (316)
T PF13200_consen 88 V-LAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFD-YIRFPDEGRLSGL 157 (316)
T ss_pred H-HhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEee-eeecCCCCccccc
Confidence 2 22347776321 1112248999999999999999999875 34444221 111111 00000
Q ss_pred --HHcCC--ChHHHHHHHHHHHHHHHHhcCCee
Q 008821 360 --RDHKL--TAKEAYQYFVLTAQKIAISKNWTP 388 (552)
Q Consensus 360 --~~~g~--~~~~l~~~f~~~~~~~~~~~G~~~ 388 (552)
..... +..+....|++.+.+.+++.|..+
T Consensus 158 ~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 158 DYSENDTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 00011 123678899999999999888754
No 17
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=95.45 E-value=0.037 Score=56.45 Aligned_cols=114 Identities=12% Similarity=0.046 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 008821 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (552)
Q Consensus 207 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~ 286 (552)
++-...+..|++||..|.+++-.+.+ |.||.-. ... ..+.....+...+|+|||+||+++||.|+-=...
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~--~~~----~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLV----DAGWYGW--EKD----DDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS----T----TT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEe----ccccccc--ccc----ccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 34578999999999999999998888 8899631 110 0111234466789999999999999888765533
Q ss_pred CC---------ccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHh
Q 008821 287 PG---------HAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (552)
Q Consensus 287 PG---------H~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~ 330 (552)
-+ +...+++.|.++.-.+..-+=++-.+.++.++..+|+++-++
T Consensus 96 ~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~ 148 (273)
T PF10566_consen 96 ETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAE 148 (273)
T ss_dssp CHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHH
T ss_pred CcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHH
Confidence 33 111222222222111111112444677788888888877765
No 18
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=1.4 Score=47.52 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=89.7
Q ss_pred CCccccceec--CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccc-ccCCCCCcc--ccCCCCCCCCCHHHHHHH
Q 008821 195 RFAFRGLLID--TSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL-EVPTYPNLW--KGAYSKWERYTVEDAHEI 269 (552)
Q Consensus 195 ~f~~RG~mlD--~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rl-e~~~~P~l~--~Ga~~~~~~YT~~ei~el 269 (552)
.=+.||+=|| .++..+.-..+++.+|.+....+|++-.-...+ |.-+ .+...|.-. .|...... -.+=+.++
T Consensus 44 ~~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~-G~~lypS~~~p~s~~~~~~~~~~~--g~DpLa~~ 120 (418)
T COG1649 44 PQEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWND-GDALYPSAVLPWSDGLPGVLGVDP--GYDPLAFV 120 (418)
T ss_pred cccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecC-ccccccccccccccCcCcccCCCC--CCChHHHH
Confidence 3567999998 557778899999999999999999998876543 2211 222222211 01000011 13458999
Q ss_pred HHHHHHcCCEEEEeecCCCccch---HhhhCCCCCCC----------CC--CCCCCCCCChhHHHHHHHHHHHHHhhCCC
Q 008821 270 VSFAKMRGINVMAEVDVPGHAES---WGAGYPNLWPS----------PS--CREPLDVSKNFTFEVISGILSDLRKIFPF 334 (552)
Q Consensus 270 v~yA~~rgI~VIPEiD~PGH~~a---~~~~yp~l~~~----------~~--~~~~l~~~~~~t~~fl~~vl~E~~~lF~~ 334 (552)
|+-|++||++|+|=++.-.-+-. ..+.+|+--.. .. ..--|||..|++-+|+.+++-|+..=++.
T Consensus 121 I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Ydv 200 (418)
T COG1649 121 IAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDV 200 (418)
T ss_pred HHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCC
Confidence 99999999999998765433221 22344432100 00 12359999999999999999999876654
No 19
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=94.74 E-value=0.2 Score=53.43 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCccc-cccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCC
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFP-LEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~r-le~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PG 288 (552)
.|.+.+++-|+.|...++|++.++. -+|. +| | ..+.|.=+.+..+++.|+++||.||.-+-+..
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~---~~W~~lE----P--------~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~ 71 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGE---FSWSWLE----P--------EEGQYDFSWLDRVLDLAAKHGIKVILGTPTAA 71 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-C---CEHHHH-----S--------BTTB---HHHHHHHHHHHCTT-EEEEEECTTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEE---echhhcc----C--------CCCeeecHHHHHHHHHHHhccCeEEEEecccc
Confidence 4668899999999999999999863 1452 33 2 23567788899999999999999997654332
Q ss_pred ccchHhhhCCCCCCC---C-----CCCCCCCCCChhHHHHHHHHHHHHHhhCCC
Q 008821 289 HAESWGAGYPNLWPS---P-----SCREPLDVSKNFTFEVISGILSDLRKIFPF 334 (552)
Q Consensus 289 H~~a~~~~yp~l~~~---~-----~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~ 334 (552)
.=..+.+.||+.... + ......|+.+|...+.+.++++++.+-+..
T Consensus 72 ~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~ 125 (374)
T PF02449_consen 72 PPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD 125 (374)
T ss_dssp S-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 223345679987431 1 122357899999999999999999887754
No 20
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.50 E-value=0.46 Score=43.31 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=78.4
Q ss_pred HHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhh
Q 008821 216 KQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGA 295 (552)
Q Consensus 216 k~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~ 295 (552)
+++++.|...+.|.+.+...+..||-+ ||.=. |. ....++++=++|+|+-|+++||+|+-=+|.--+.. +..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~~-~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~~ 74 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTKV-GP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDED-AAE 74 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCCC-Cc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChH-HHH
Confidence 678999999999999998888888764 44321 21 23345667789999999999999999998874444 345
Q ss_pred hCCCCC---CCCC----------CCCCCCCCChhHHHHHHHHHHHHHhhCCC
Q 008821 296 GYPNLW---PSPS----------CREPLDVSKNFTFEVISGILSDLRKIFPF 334 (552)
Q Consensus 296 ~yp~l~---~~~~----------~~~~l~~~~~~t~~fl~~vl~E~~~lF~~ 334 (552)
.|||-+ .++. .-..+|+.. .-.+++...++|+.+.++.
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~~ 125 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRYDV 125 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcCCC
Confidence 788853 1111 011356654 5669999999999987764
No 21
>smart00642 Aamy Alpha-amylase domain.
Probab=93.81 E-value=0.42 Score=45.25 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecC------CccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHWHIIDE------QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~HltDd------q~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
=....|.+-++.++..++|.+++-.--. ..|.+....|-.+. ..+=|.+|++++|+-|+++||+||-.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~------~~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID------PRFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3467788888899999999998854211 01111111221111 11227899999999999999999999
Q ss_pred ecCCCccch
Q 008821 284 VDVPGHAES 292 (552)
Q Consensus 284 iD~PGH~~a 292 (552)
+ +|.|+..
T Consensus 90 ~-V~NH~~~ 97 (166)
T smart00642 90 V-VINHTSD 97 (166)
T ss_pred E-CCCCCCC
Confidence 9 8999765
No 22
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=92.44 E-value=1.5 Score=49.29 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecC----CccccccCCCCCccccCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeecC
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWE-RYTVEDAHEIVSFAKMRGINVMAEVDV 286 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDd----q~~rle~~~~P~l~~Ga~~~~~-~YT~~ei~elv~yA~~rgI~VIPEiD~ 286 (552)
...|.+-||.++.+++|.+++-..-+ ..|.+....| +.... +=|.+|+|+||+-|.++||+||-.+ +
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~-------~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~-V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLP-------YAPHNAYGGPDDLKALVDAAHGLGLGVILDV-V 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCc-------cccccccCCHHHHHHHHHHHHHCCCEEEEEE-c
Confidence 45566668999999999998865421 1232221111 11122 2278999999999999999999999 7
Q ss_pred CCccchHhhhCCC---CCC---CCCCCCCCCCCCh---hHHHHHHHHHHHHHhhC
Q 008821 287 PGHAESWGAGYPN---LWP---SPSCREPLDVSKN---FTFEVISGILSDLRKIF 332 (552)
Q Consensus 287 PGH~~a~~~~yp~---l~~---~~~~~~~l~~~~~---~t~~fl~~vl~E~~~lF 332 (552)
+.|+..-....+. +.. ...+...+|..++ ++.+++.+.+.-..+-|
T Consensus 182 ~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~ 236 (542)
T TIGR02402 182 YNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREY 236 (542)
T ss_pred cCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 8998532111111 110 1123346777777 88888777766665433
No 23
>PRK12313 glycogen branching enzyme; Provisional
Probab=92.40 E-value=2 Score=49.35 Aligned_cols=117 Identities=19% Similarity=0.121 Sum_probs=73.8
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEeecC----CccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 209 YLPVDVIK-QIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 209 f~~~~~lk-~~Id~ma~~KlN~lh~HltDd----q~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+-+...|. ++||.+..+++|.+++=.--. .+|.+....|=.+ ...+=|.+|+|+||+.|.++||.||-.
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i------~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAP------TSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcC------CCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44545544 668999999999998754211 1233322222111 112338999999999999999999999
Q ss_pred ecCCCccchH---hhhC---CCCC-CCC-------CCCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 284 VDVPGHAESW---GAGY---PNLW-PSP-------SCREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 284 iD~PGH~~a~---~~~y---p~l~-~~~-------~~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
+ +|.|+..- +..+ +... ..+ -....+|..+|++.+++.+.+.-..+-|
T Consensus 240 ~-V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~ 301 (633)
T PRK12313 240 W-VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEY 301 (633)
T ss_pred E-CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 9 78998531 1110 0000 000 0112578899999999999888887654
No 24
>PRK12568 glycogen branching enzyme; Provisional
Probab=91.97 E-value=1.7 Score=50.44 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=74.2
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEeecC----CccccccCCCCCccccCCCCCC-CCCHHHHHHHHHHHHHcCCEEEE
Q 008821 209 YLPVDVIK-QIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWE-RYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 209 f~~~~~lk-~~Id~ma~~KlN~lh~HltDd----q~~rle~~~~P~l~~Ga~~~~~-~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+.+...+. ++|+.+..+++|.+++-..-. .+|.+... |.|+... +=|.+|+|++|+.|.++||.||-
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~-------~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPL-------GLYAPTARHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCC-------cCCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 44544444 568999999999888854321 12332211 2222222 23799999999999999999999
Q ss_pred eecCCCccchHh---hhCC--CCCC--CCC-------CCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 283 EVDVPGHAESWG---AGYP--NLWP--SPS-------CREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 283 EiD~PGH~~a~~---~~yp--~l~~--~~~-------~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
++ +|+|+..-. ..+. .+.. ++. ....+|..+|++.+|+-+.+.-..+-|
T Consensus 338 D~-V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey 400 (730)
T PRK12568 338 DW-VSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY 400 (730)
T ss_pred Ee-ccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh
Confidence 99 899986421 1111 1110 000 011468999999999998888777655
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=91.79 E-value=1.5 Score=53.63 Aligned_cols=110 Identities=17% Similarity=0.275 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeecC----CccccccCCCCCccccCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEeecCCCc
Q 008821 215 IKQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWER-YTVEDAHEIVSFAKMRGINVMAEVDVPGH 289 (552)
Q Consensus 215 lk~~Id~ma~~KlN~lh~HltDd----q~~rle~~~~P~l~~Ga~~~~~~-YT~~ei~elv~yA~~rgI~VIPEiD~PGH 289 (552)
..++||.+...++|.+++-..-. .+|-+....| |..... =|.+|+|.+|+.|.++||.||-.+ +|+|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y-------~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSY-------FAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW-VPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCcccc-------CCcCcccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 35678999999999888754311 2333332222 222222 289999999999999999999999 9999
Q ss_pred cch--H-hhhC---CCCC-------CCCC-CCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 290 AES--W-GAGY---PNLW-------PSPS-CREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 290 ~~a--~-~~~y---p~l~-------~~~~-~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
... + +..+ +-+. .... ....+|..++++.+|+.+...-..+-|
T Consensus 840 ~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ey 896 (1224)
T PRK14705 840 FPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEF 896 (1224)
T ss_pred CCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 842 1 1111 1010 0001 112478899999999998888777665
No 26
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=91.78 E-value=6.1 Score=42.63 Aligned_cols=169 Identities=20% Similarity=0.205 Sum_probs=110.3
Q ss_pred ccCCCCCCeEEEEecCCCccceeeEEEEEcCchhhhHHHHHHHHhhccCCCCceeEeeccceEEEcCCCCccccce----
Q 008821 127 LQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLL---- 202 (552)
Q Consensus 127 ~~~~~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~i~~~~~~I~D~P~f~~RG~m---- 202 (552)
+.++ +|||.|....-+. .....|.|++..|++||+=-|+-|++.+.. +-. +.|...|+-+.|-+-
T Consensus 89 ~~Lg-EEGy~irt~~~~g---~~~lvi~g~t~~gvlYG~F~ll~liq~g~~-----v~k--l~iv~~Pk~klRMlNhWDN 157 (684)
T COG3661 89 LKLG-EEGYLIRTVTVGG---KATLVIAGNTDIGVLYGVFRLLSLIQTGQS-----VDK--LDIVSVPKVKLRMLNHWDN 157 (684)
T ss_pred cccc-CcceEEEEEEeCC---eEEEEEEeccceeEEeeHHHHHHHHHhccc-----hhh--cchhcCcHHHHhhhhhhhc
Confidence 3454 8999987655431 345789999999999999999888876532 111 246666766666441
Q ss_pred ec--CCCCC-------------CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCC---HH
Q 008821 203 ID--TSRHY-------------LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYT---VE 264 (552)
Q Consensus 203 lD--~aR~f-------------~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT---~~ 264 (552)
|| +-|.| .-.+.+|.+-+.+|..++|-..+.-..- ++-. ..-.| -.
T Consensus 158 lDg~iERGYaG~SIFf~~n~~~~n~qR~kDYAR~laSiGINg~v~NNVNv-------k~~e---------~~lit~~fl~ 221 (684)
T COG3661 158 LDGHIERGYAGQSIFFWWNLPGHNDQRMKDYARALASIGINGTVLNNVNV-------KKAE---------SYLITAPFLA 221 (684)
T ss_pred cccceecccCCCceeeeccccccchHHHHHHHHHHhhcCcceEEeccccc-------chhh---------hheechHhHH
Confidence 11 11211 1136689999999999999877743211 1100 00122 24
Q ss_pred HHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCC
Q 008821 265 DAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPF 334 (552)
Q Consensus 265 ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~ 334 (552)
+++.|...-+.+||.|.-.|+.-.-+. | ..-+.-||.++++..+-++-.+|+-+..|+
T Consensus 222 k~aklAdiFR~YGIK~yLsinfaSP~~--------l----GgL~TADPLDe~VrawWkeka~~IY~yIPD 279 (684)
T COG3661 222 KAAKLADIFRPYGIKVYLSINFASPME--------L----GGLKTADPLDEAVRAWWKEKADEIYKYIPD 279 (684)
T ss_pred HHHHHHHHhhhccceEEEEeccCCccc--------c----CCcCcCCcccHHHHHHHHHHHHHHHHhccc
Confidence 566677777899999999987654332 2 112356788999999999999999888775
No 27
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.42 E-value=1.8 Score=49.45 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCCcEEEEEee-c---CCccccccCCCCCccccCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeecCCCc
Q 008821 215 IKQIIESMSYAKLNVLHWHII-D---EQSFPLEVPTYPNLWKGAYSKWE-RYTVEDAHEIVSFAKMRGINVMAEVDVPGH 289 (552)
Q Consensus 215 lk~~Id~ma~~KlN~lh~Hlt-D---dq~~rle~~~~P~l~~Ga~~~~~-~YT~~ei~elv~yA~~rgI~VIPEiD~PGH 289 (552)
+.++||.+..+++|.+++=.- + +..|.+....| |.... +=|.+|+|+||+-|.++||.||-.+ ++.|
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y-------~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~-V~NH 230 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY-------YAPTSRFGTPDDFMYFVDACHQAGIGVILDW-VPGH 230 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-------cccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccC
Confidence 345679999999998888331 1 11233332222 12222 2278999999999999999999999 7899
Q ss_pred cchH---hhhC---CCCC---CC-----CCCCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 290 AESW---GAGY---PNLW---PS-----PSCREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 290 ~~a~---~~~y---p~l~---~~-----~~~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
+..- +..+ |... +. .-....+|..+|++.+++.+++.-..+-|
T Consensus 231 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey 287 (613)
T TIGR01515 231 FPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY 287 (613)
T ss_pred cCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 8631 1111 1110 00 00112478899999999999998887754
No 28
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=91.38 E-value=1.7 Score=43.60 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=90.2
Q ss_pred ccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 008821 197 AFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (552)
Q Consensus 197 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~r 276 (552)
.+||+-.. +..-....+.++.|+..++|.+-+++. |..-.+.-|... -..-..+.++++|+.|+++
T Consensus 9 ~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~------~~~~~~~~ld~~v~~a~~~ 74 (281)
T PF00150_consen 9 NWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYN------YDETYLARLDRIVDAAQAY 74 (281)
T ss_dssp EEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTS------BTHHHHHHHHHHHHHHHHT
T ss_pred Eeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCcc------ccHHHHHHHHHHHHHHHhC
Confidence 45777654 333337889999999999999999885 311111111110 0011356799999999999
Q ss_pred CCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCC---CcCCcCCC-CC
Q 008821 277 GINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGD---EVNTDCWS-ST 352 (552)
Q Consensus 277 gI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgD---Ev~~~~w~-~~ 352 (552)
||.||+.+-.. |..+. ........+...+.+.++++.++.-|...--++|=| |....... ..
T Consensus 75 gi~vild~h~~----------~~w~~----~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 75 GIYVILDLHNA----------PGWAN----GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp T-EEEEEEEES----------TTCSS----STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTT
T ss_pred CCeEEEEeccC----------ccccc----cccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCcccc
Confidence 99999887332 21110 112223455566778888888888874322244432 33321110 00
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCee
Q 008821 353 PHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTP 388 (552)
Q Consensus 353 p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~~ 388 (552)
+. ...+.+..|.+++.+.+++.+...
T Consensus 141 ~~----------~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 141 NA----------QNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp SH----------HHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred cc----------ccchhhhhHHHHHHHHHHhcCCcc
Confidence 00 022667889999999999887643
No 29
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=91.27 E-value=7.2 Score=45.51 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=97.1
Q ss_pred CCHHHH-HHHHHHHHhCCCcEEEEEeecC----CccccccCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEe
Q 008821 210 LPVDVI-KQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 210 ~~~~~l-k~~Id~ma~~KlN~lh~HltDd----q~~rle~~~~P~l~~Ga~~~~~~Y-T~~ei~elv~yA~~rgI~VIPE 283 (552)
-+...+ .+.|+.+..+++|.+++-.--+ .+|-+....| |.....| |.+|+|+||+-|.++||.||-.
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~-------fa~~~~~Gtp~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNF-------FAVSSRSGTPEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccC-------cccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 344443 5789999999999888754322 1233322222 1222223 7899999999999999999999
Q ss_pred ecCCCccchHh----hhC----CCCCC---CC----CCCCCCCCCChhHHHHHHHHHHHHHhhCC-----------CCee
Q 008821 284 VDVPGHAESWG----AGY----PNLWP---SP----SCREPLDVSKNFTFEVISGILSDLRKIFP-----------FELF 337 (552)
Q Consensus 284 iD~PGH~~a~~----~~y----p~l~~---~~----~~~~~l~~~~~~t~~fl~~vl~E~~~lF~-----------~~~i 337 (552)
+ ++.|+..-. ..+ +.... .+ -....+|..++++.+|+.+.+.-..+-|. .-|.
T Consensus 320 v-V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~ 398 (758)
T PLN02447 320 V-VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYH 398 (758)
T ss_pred e-ccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhcc
Confidence 9 899986311 111 11110 00 01125888999999999998888876541 1255
Q ss_pred eeCCCCcCCcCCCCCHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHhcCCeeeEecc
Q 008821 338 HLGGDEVNTDCWSSTPHVKKWLRDHKL-TAKEAYQYFVLTAQKIAISKNWTPVNWEE 393 (552)
Q Consensus 338 HiGgDEv~~~~w~~~p~~~~~~~~~g~-~~~~l~~~f~~~~~~~~~~~G~~~~~W~d 393 (552)
|-|...-+...++. .-|. .+.+. ..|+..+.+.+++.....+.=.|
T Consensus 399 ~hg~~~~f~~~~~~---------~~g~~~d~~a-~~fL~~~N~~i~~~~p~~~~IAE 445 (758)
T PLN02447 399 HHGLQMAFTGNYNE---------YFGMATDVDA-VVYLMLANDLLHGLYPEAVTIAE 445 (758)
T ss_pred ccCcccccccCccc---------ccCCccChHH-HHHHHHHHHHHHHhCCCeEEEEE
Confidence 55544322222211 0111 11122 35788888888776655544434
No 30
>PRK05402 glycogen branching enzyme; Provisional
Probab=91.07 E-value=2.6 Score=49.24 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=73.9
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEeec----CCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 209 YLPVDVIK-QIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 209 f~~~~~lk-~~Id~ma~~KlN~lh~HltD----dq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+-+...|. ++||.+..+++|.+++=.-- +..|.+....|=.+ ...+=|.+|+|+||+-|.++||+||-.
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai------~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAP------TSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCc------CcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34555554 55799999999998885431 11233332222111 123348999999999999999999999
Q ss_pred ecCCCccchH---hhhCC---CCC-CC---C----CCCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 284 VDVPGHAESW---GAGYP---NLW-PS---P----SCREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 284 iD~PGH~~a~---~~~yp---~l~-~~---~----~~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
+ +|.|+..- +..+. .+. .. + -....+|..+|++.+++.+.+.-.++-|
T Consensus 335 ~-V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~ 396 (726)
T PRK05402 335 W-VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEF 396 (726)
T ss_pred E-CCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHh
Confidence 8 78998531 11110 000 00 0 0112478899999999998888777654
No 31
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.55 E-value=2.4 Score=48.64 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=73.2
Q ss_pred CCCHHH-HHHHHHHHHhCCCcEEEEEeecC----CccccccCCCCCccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 008821 209 YLPVDV-IKQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERY-TVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 209 f~~~~~-lk~~Id~ma~~KlN~lh~HltDd----q~~rle~~~~P~l~~Ga~~~~~~Y-T~~ei~elv~yA~~rgI~VIP 282 (552)
|.+... +.++|+.+...++|.+++=..-. .+|-+.... -|+....| |.+|+|.+|+-|.++||.||.
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~-------~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTG-------YYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccc-------ccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 555444 45667899999999887744311 122222111 12233334 899999999999999999999
Q ss_pred eecCCCccchH---hhhC---CCC--C-CC-C----CCCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 283 EVDVPGHAESW---GAGY---PNL--W-PS-P----SCREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 283 EiD~PGH~~a~---~~~y---p~l--~-~~-~----~~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
++ +|.|+..- +..+ |.. . +. + -....+|..+|++.+|+.+.+.-..+-|
T Consensus 236 D~-v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 236 DW-VPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred Ee-cccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 99 88997531 1111 110 0 00 0 0112478899999999999888777654
No 32
>PLN02960 alpha-amylase
Probab=90.53 E-value=2.5 Score=49.62 Aligned_cols=116 Identities=11% Similarity=0.075 Sum_probs=74.8
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEeec----CCccccccCCCCCccccCCCCCC-CCCHHHHHHHHHHHHHcCCEEEE
Q 008821 209 YLPVDVIK-QIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKWE-RYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 209 f~~~~~lk-~~Id~ma~~KlN~lh~HltD----dq~~rle~~~~P~l~~Ga~~~~~-~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+-+...+. +.|+.+..+++|.+.+-..- ..+|-+....| |+... +=|.+|++.||+-|.++||.||-
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~y-------fa~~~~yGtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNF-------FAVSSRFGTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-------CCcccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 44555554 67999999999998885542 22233322221 22222 23799999999999999999999
Q ss_pred eecCCCccchH----hhhC---CCCC-C---C----CCCCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 283 EVDVPGHAESW----GAGY---PNLW-P---S----PSCREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 283 EiD~PGH~~a~----~~~y---p~l~-~---~----~~~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
.+ +|.|+..- +..+ +.+. . . .-....+|..++++.+|+-+.+.-..+-|
T Consensus 485 Dv-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 485 DI-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred Ee-cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 89998531 1111 1110 0 0 00112478999999999998887776544
No 33
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=90.17 E-value=1.8 Score=38.67 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCCCeEEEEecCCCccceeeEEEEEcCchhhhHHHHH
Q 008821 131 VDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLET 167 (552)
Q Consensus 131 ~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~glqT 167 (552)
.+|||.|+.-..+. ...+.|.|++..|++||+=.
T Consensus 88 ~~EGy~I~~v~~~~---~~~lvI~g~~~~G~LYGvF~ 121 (122)
T PF03648_consen 88 GEEGYIIRTVEIGG---KNVLVIAGKTERGVLYGVFH 121 (122)
T ss_dssp STT-EEEEEEESSS---SEEEEEEESSHHHHHHHHHH
T ss_pred CCccEEEEEEecCC---CCEEEEEeCCCcEEEEEEee
Confidence 48999999932211 23599999999999999743
No 34
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=89.72 E-value=6.4 Score=44.97 Aligned_cols=132 Identities=11% Similarity=0.168 Sum_probs=75.4
Q ss_pred ccceecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeecC------------CccccccCCCCCccccCCCC---CCCCC
Q 008821 199 RGLLIDTSRH-YLPVDVIKQIIESMSYAKLNVLHWHIIDE------------QSFPLEVPTYPNLWKGAYSK---WERYT 262 (552)
Q Consensus 199 RG~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDd------------q~~rle~~~~P~l~~Ga~~~---~~~YT 262 (552)
||-...++.+ -....-+.+.||.+..+++|.+++=..-+ ..|.+....|=.. .+.|.. .+.-+
T Consensus 149 ~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~-~~~y~~~p~~~~~~ 227 (605)
T TIGR02104 149 KGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVP-EGSYSTNPYDPATR 227 (605)
T ss_pred CCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCc-ChhhhcCCCccchH
Confidence 5544444432 11234456779999999999988843311 1133222111000 011111 01112
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecCCCccch-----HhhhCCCCC----C------CCCCCCCCCCCChhHHHHHHHHHHH
Q 008821 263 VEDAHEIVSFAKMRGINVMAEVDVPGHAES-----WGAGYPNLW----P------SPSCREPLDVSKNFTFEVISGILSD 327 (552)
Q Consensus 263 ~~ei~elv~yA~~rgI~VIPEiD~PGH~~a-----~~~~yp~l~----~------~~~~~~~l~~~~~~t~~fl~~vl~E 327 (552)
.+|+|+||+-|.++||+||-.+ ++.|+.. +....|... + ...|...++..+|++.+++.+.+.-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDv-V~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDV-VYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-EcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5899999999999999999999 8889852 111112210 0 1123345677789999998888877
Q ss_pred HHhhC
Q 008821 328 LRKIF 332 (552)
Q Consensus 328 ~~~lF 332 (552)
..+-|
T Consensus 307 W~~e~ 311 (605)
T TIGR02104 307 WVKEY 311 (605)
T ss_pred HHHHc
Confidence 76544
No 35
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=89.55 E-value=3.1 Score=47.32 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=77.1
Q ss_pred ceecCCCC--CCC-HHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc------ccCCCCCCCC-CHHHHHHHH
Q 008821 201 LLIDTSRH--YLP-VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW------KGAYSKWERY-TVEDAHEIV 270 (552)
Q Consensus 201 ~mlD~aR~--f~~-~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~------~Ga~~~~~~Y-T~~ei~elv 270 (552)
+|+-+-+. +.+ .+...++|+.++..++|.+.+ +.+..||--. .|-|++...| |.+|+|.||
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IEL---------MPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIEL---------MPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEE---------cccccCCCCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 35544433 344 455668999999999997777 3344555321 1334444445 999999999
Q ss_pred HHHHHcCCEEEEeecCCCccchH---hhhCCC-CC-----CC-----CCCCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 271 SFAKMRGINVMAEVDVPGHAESW---GAGYPN-LW-----PS-----PSCREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 271 ~yA~~rgI~VIPEiD~PGH~~a~---~~~yp~-l~-----~~-----~~~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
+.|-++||.||-.. +|||...- +..|-. .. +. +-.....+...+++..|+-+-.--..+-|
T Consensus 221 D~aH~~GIgViLD~-V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~y 295 (628)
T COG0296 221 DAAHQAGIGVILDW-VPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEY 295 (628)
T ss_pred HHHHHcCCEEEEEe-cCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 99998752 221111 00 00 00112345568999998876555555544
No 36
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=1.2 Score=49.10 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHH---HHHHHHHHHHcCCEEE
Q 008821 205 TSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVED---AHEIVSFAKMRGINVM 281 (552)
Q Consensus 205 ~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~e---i~elv~yA~~rgI~VI 281 (552)
.-.+.+.++.-|.+.+.+...+||++..-..||---| .+| ++-||.+| ++.||+-|++.||+.|
T Consensus 25 FYGRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDyKHR-------~~W------RElY~vEEa~~L~~Li~aAke~~i~F~ 91 (891)
T KOG3698|consen 25 FYGRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDYKHR-------SLW------RELYNVEEATYLRNLIEAAKENNINFV 91 (891)
T ss_pred ccCCCCCHHHHHHHHHHHHhcccceeeecccchhHHH-------HHH------HHHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 3467788999999999999999999999999884322 222 35577766 7889999999999999
Q ss_pred EeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 008821 282 AEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLR 329 (552)
Q Consensus 282 PEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~ 329 (552)
-.| +||- .+-.++|+-..-++.-++++.
T Consensus 92 YAi-SPGl-------------------DitySspkE~~TLKrKLDQV~ 119 (891)
T KOG3698|consen 92 YAI-SPGL-------------------DITYSSPKEMDTLKRKLDQVR 119 (891)
T ss_pred EEc-CCCc-------------------ccccCCHHHHHHHHHHHHHHH
Confidence 988 6663 122355666666666666654
No 37
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=88.97 E-value=1.7 Score=48.83 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecC---CccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDE---QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDd---q~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~P 287 (552)
.+.-|.+-+|.++.+++|.+++-.--. ....+.+..|=.+ ...+=|.+|+++||+.|.++||+||-.+ +|
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~i------d~~~Gt~~~~~~lv~~ah~~gi~vilD~-v~ 97 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAI------NPLFGTMADFEELVSEAKKRNIKIMLDM-VF 97 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCcc------CcccCCHHHHHHHHHHHHHCCCEEEEEE-Cc
Confidence 567778888999999999988843100 0011111111111 1112288999999999999999999999 89
Q ss_pred Cccch---Hhh-h------CCCC--C-------CCCC-------------------------CCCCCCCCChhHHHHHHH
Q 008821 288 GHAES---WGA-G------YPNL--W-------PSPS-------------------------CREPLDVSKNFTFEVISG 323 (552)
Q Consensus 288 GH~~a---~~~-~------yp~l--~-------~~~~-------------------------~~~~l~~~~~~t~~fl~~ 323 (552)
.|+.. |.+ + |.+. + +... ..-.||..||++.+.+.+
T Consensus 98 NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~ 177 (543)
T TIGR02403 98 NHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKD 177 (543)
T ss_pred cccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHH
Confidence 99863 221 1 1111 0 0000 011488899999999999
Q ss_pred HHHHHHhh
Q 008821 324 ILSDLRKI 331 (552)
Q Consensus 324 vl~E~~~l 331 (552)
+++-..+.
T Consensus 178 ~~~~W~~~ 185 (543)
T TIGR02403 178 VVNFWRDK 185 (543)
T ss_pred HHHHHHHc
Confidence 99888763
No 38
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=88.93 E-value=3.4 Score=47.88 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=69.1
Q ss_pred HHHHHHhCCCcEEEEEeecCC-------------ccccccCCCCCccccCCCCCCCC----CHHHHHHHHHHHHHcCCEE
Q 008821 218 IIESMSYAKLNVLHWHIIDEQ-------------SFPLEVPTYPNLWKGAYSKWERY----TVEDAHEIVSFAKMRGINV 280 (552)
Q Consensus 218 ~Id~ma~~KlN~lh~HltDdq-------------~~rle~~~~P~l~~Ga~~~~~~Y----T~~ei~elv~yA~~rgI~V 280 (552)
.||.+..+++|.+++=..=+. .|.+..-. -|.....| |.+|+|+||+-|.++||+|
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~-------y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLG-------FFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccc-------ccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 588999999998887432110 01111100 11233345 6899999999999999999
Q ss_pred EEeecCCCccchHhhhCCC----------C---CC--------CCCCCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 281 MAEVDVPGHAESWGAGYPN----------L---WP--------SPSCREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 281 IPEiD~PGH~~a~~~~yp~----------l---~~--------~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
|-.+ ++.|+..-....|. + .+ ...|...+|..+|++.+++.+.+.-...-|
T Consensus 262 IlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~ 333 (688)
T TIGR02100 262 ILDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEM 333 (688)
T ss_pred EEEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHc
Confidence 9999 88898642111110 0 00 112445688999999999999888777544
No 39
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=88.42 E-value=2.7 Score=45.37 Aligned_cols=122 Identities=9% Similarity=0.141 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccccc-CCCCCccccCCCC-CCCCCHHHHHHHHHHHHHcCCEE----EEe
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEV-PTYPNLWKGAYSK-WERYTVEDAHEIVSFAKMRGINV----MAE 283 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~-~~~P~l~~Ga~~~-~~~YT~~ei~elv~yA~~rgI~V----IPE 283 (552)
++-+.|+++++.|+.+++++|.+ |.||--.- ..... .|-+.. ...+- .-++.|+++.+++|+.. -||
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fvi----DDGW~~~r~~d~~~--~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe 127 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVI----DDGWFGGRDDDNAG--LGDWEPDPKKFP-NGLKPLADYIHSLGMKFGLWFEPE 127 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-----SSSBCTESTTTST--TSBECBBTTTST-THHHHHHHHHHHTT-EEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEE----cCccccccCCCccc--CCceeEChhhhC-CcHHHHHHHHHHCCCeEEEEeccc
Confidence 46899999999999999999988 66884210 01111 122211 11221 24999999999999973 344
Q ss_pred ecCCCccchHhhhCCCCCCC------CCCCC--CCCCCChhHHHHHHHHHHHHHhhCCCCeeeeC
Q 008821 284 VDVPGHAESWGAGYPNLWPS------PSCRE--PLDVSKNFTFEVISGILSDLRKIFPFELFHLG 340 (552)
Q Consensus 284 iD~PGH~~a~~~~yp~l~~~------~~~~~--~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiG 340 (552)
+=.|+ ..+.+.||+.... ....+ .||+++|++.+++.+.++.+..-..-.||=+-
T Consensus 128 ~v~~~--S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D 190 (394)
T PF02065_consen 128 MVSPD--SDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWD 190 (394)
T ss_dssp EEESS--SCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred cccch--hHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 32222 3344567764211 01122 59999999999999999988765555555443
No 40
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=88.42 E-value=0.44 Score=48.22 Aligned_cols=74 Identities=26% Similarity=0.287 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecC---CccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCC
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDE---QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDd---q~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PG 288 (552)
..-|.+-||.++..++|.+++-.-=. ..|.+....|=.+ ...+=|.+|+++||+-|.++||+||-.+ ++.
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~v------d~~~Gt~~d~~~Lv~~~h~~gi~VilD~-V~N 75 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAV------DPRFGTMEDFKELVDAAHKRGIKVILDV-VPN 75 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEE------STTTBHHHHHHHHHHHHHHTTCEEEEEE-ETS
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeecc------ccccchhhhhhhhhhccccccceEEEee-ecc
Confidence 34567778999999999998842100 1111111111000 1122289999999999999999999998 788
Q ss_pred ccch
Q 008821 289 HAES 292 (552)
Q Consensus 289 H~~a 292 (552)
|+..
T Consensus 76 H~~~ 79 (316)
T PF00128_consen 76 HTSD 79 (316)
T ss_dssp EEET
T ss_pred cccc
Confidence 9863
No 41
>PRK03705 glycogen debranching enzyme; Provisional
Probab=88.36 E-value=2.8 Score=48.23 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=70.0
Q ss_pred HHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-c------c-----CCCCCCCCC------HHHHHHHHHHHHHcCCE
Q 008821 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-K------G-----AYSKWERYT------VEDAHEIVSFAKMRGIN 279 (552)
Q Consensus 218 ~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~------G-----a~~~~~~YT------~~ei~elv~yA~~rgI~ 279 (552)
.||.+..+++|.+++=..-+ ..+.+++. . | -|.....|. .+|+|++|+-|.++||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~------~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~ 257 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQ------FASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIE 257 (658)
T ss_pred chHHHHHcCCCEEEecCccc------CCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCE
Confidence 48899999999888844311 11111110 0 1 112233343 47999999999999999
Q ss_pred EEEeecCCCccchHhhhCCCC-------------C------CCCCCCCCCCCCChhHHHHHHHHHHHHHhhCC
Q 008821 280 VMAEVDVPGHAESWGAGYPNL-------------W------PSPSCREPLDVSKNFTFEVISGILSDLRKIFP 333 (552)
Q Consensus 280 VIPEiD~PGH~~a~~~~yp~l-------------~------~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~ 333 (552)
||-.+ ++.|+.......|.+ . ....|...||..+|++.+++.+.+.-..+-|.
T Consensus 258 VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 258 VILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred EEEEE-cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999 888986421111111 0 01134457889999999999999988887653
No 42
>PRK10785 maltodextrin glucosidase; Provisional
Probab=84.65 E-value=3.8 Score=46.71 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=54.8
Q ss_pred CCCCC--HHHHHHHHHHHHhCCCcEEEEEeecC--CccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 207 RHYLP--VDVIKQIIESMSYAKLNVLHWHIIDE--QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 207 R~f~~--~~~lk~~Id~ma~~KlN~lh~HltDd--q~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+.|+. +.-|.+-||.++.+++|.+++-.-=. ..+++....|=.+ ...+=|.+|+++||+-|.+|||+||-
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~i------Dp~~Gt~~df~~Lv~~aH~rGikVil 244 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHV------DPQLGGDAALLRLRHATQQRGMRLVL 244 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCccccccc------CcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 45665 88899999999999999998854210 0111111111111 11122789999999999999999999
Q ss_pred eecCCCccch
Q 008821 283 EVDVPGHAES 292 (552)
Q Consensus 283 EiD~PGH~~a 292 (552)
.+ ++.|+..
T Consensus 245 D~-V~NH~~~ 253 (598)
T PRK10785 245 DG-VFNHTGD 253 (598)
T ss_pred EE-CCCcCCC
Confidence 99 8899874
No 43
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=84.42 E-value=4 Score=48.23 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeec----CCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 209 YLPVDVIKQIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 209 f~~~~~lk~~Id~ma~~KlN~lh~HltD----dq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
=++.+.+.+.++.++.+++|.+.+-.-- ...+.+.+..|-.+. ..+=|.+|++++++-|+++||.||-.|
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id------p~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN------PELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC------CCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3677889999999999999988775421 112222222332221 111278999999999999999999999
Q ss_pred cCCCccch
Q 008821 285 DVPGHAES 292 (552)
Q Consensus 285 D~PGH~~a 292 (552)
+|.|+..
T Consensus 90 -V~NH~~~ 96 (879)
T PRK14511 90 -VPNHMAV 96 (879)
T ss_pred -ccccccC
Confidence 9999863
No 44
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=84.00 E-value=4.7 Score=47.35 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEee----cCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 209 YLPVDVIKQIIESMSYAKLNVLHWHII----DEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 209 f~~~~~lk~~Id~ma~~KlN~lh~Hlt----Ddq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
=++.+.+.+.|+.++..++|.+++-.- +...+.+.+..|-.+. ..+=|.+|+++|++-|+++||.||-.|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id------p~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN------PELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC------CCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 457788999999999999997776331 1111222222222221 112279999999999999999999999
Q ss_pred cCCCccch
Q 008821 285 DVPGHAES 292 (552)
Q Consensus 285 D~PGH~~a 292 (552)
+|.|+..
T Consensus 86 -VpNH~a~ 92 (825)
T TIGR02401 86 -VPNHMAV 92 (825)
T ss_pred -ccccccc
Confidence 8999863
No 45
>PLN02361 alpha-amylase
Probab=83.88 E-value=15 Score=39.79 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccc
Q 008821 213 DVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSK-WERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (552)
Q Consensus 213 ~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~-~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~ 291 (552)
..|.+-++.++..+++.+.+-..-. +.. .-+|.- ..-|.- ..+=|++|++++|+-|.++||+||-.+ ++-|+.
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~~-~~~--~~GY~~--~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~-V~NH~~ 102 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPSQ-SLA--PEGYLP--QNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI-VINHRV 102 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCc-CCC--CCCCCc--ccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE-cccccc
Confidence 5677888999999999988744210 100 001100 000111 123389999999999999999999999 788874
Q ss_pred hHhh-------hCCC--C-------C--CCC----C------CCCCCCCCChhHHHHHHHHHHHHHh
Q 008821 292 SWGA-------GYPN--L-------W--PSP----S------CREPLDVSKNFTFEVISGILSDLRK 330 (552)
Q Consensus 292 a~~~-------~yp~--l-------~--~~~----~------~~~~l~~~~~~t~~fl~~vl~E~~~ 330 (552)
+... .|.. + + ..+ . ....||-.||++.+.+++.+.-+.+
T Consensus 103 g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~ 169 (401)
T PLN02361 103 GTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRN 169 (401)
T ss_pred CCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHh
Confidence 2211 1110 0 0 000 0 0124788899999888888876643
No 46
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=82.70 E-value=5.9 Score=43.84 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeec-CCc----cccccCCCCCccccCC----C-CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 213 DVIKQIIESMSYAKLNVLHWHIID-EQS----FPLEVPTYPNLWKGAY----S-KWERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 213 ~~lk~~Id~ma~~KlN~lh~HltD-dq~----~rle~~~~P~l~~Ga~----~-~~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
..|.+-+|.++.+++|.+.+=.-= +.+ +.+....|=.| +.| . ...+=|.+|+|+||+-|.+|||+||-
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~--~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDL--GEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeeccccc--ccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 456777899999999999874321 110 11111111000 000 0 01122899999999999999999999
Q ss_pred eecCCCccc
Q 008821 283 EVDVPGHAE 291 (552)
Q Consensus 283 EiD~PGH~~ 291 (552)
.+ ++.|+.
T Consensus 100 D~-V~NH~~ 107 (479)
T PRK09441 100 DV-VLNHKA 107 (479)
T ss_pred EE-Cccccc
Confidence 99 999987
No 47
>PLN02784 alpha-amylase
Probab=82.63 E-value=6.7 Score=46.15 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=57.3
Q ss_pred ccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCC--ccccccCCCCCccccCCCC-CCCCCHHHHHHHHHHHHH
Q 008821 199 RGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQ--SFPLEVPTYPNLWKGAYSK-WERYTVEDAHEIVSFAKM 275 (552)
Q Consensus 199 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq--~~rle~~~~P~l~~Ga~~~-~~~YT~~ei~elv~yA~~ 275 (552)
.||.-|+-..----..|.+-++.++.+++|.+++-..-.. .+.+....| |.- ..+=|.+|+++||+-|.+
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~-------y~lds~yGT~~ELk~LI~a~H~ 579 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDL-------YNLNSRYGTIDELKDLVKSFHE 579 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccc-------cccCcCcCCHHHHHHHHHHHHH
Confidence 4555565443111567888899999999999988652100 001110011 111 223389999999999999
Q ss_pred cCCEEEEeecCCCccchH
Q 008821 276 RGINVMAEVDVPGHAESW 293 (552)
Q Consensus 276 rgI~VIPEiD~PGH~~a~ 293 (552)
+||.||-.+ ++.|+.+.
T Consensus 580 ~GIkVIlDi-ViNH~ag~ 596 (894)
T PLN02784 580 VGIKVLGDA-VLNHRCAH 596 (894)
T ss_pred CCCEEEEEE-Cccccccc
Confidence 999999999 89998643
No 48
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=82.12 E-value=27 Score=42.70 Aligned_cols=120 Identities=13% Similarity=0.203 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCc----------------------cccccCCCCCccccCCCC---CCCCCHHH
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQS----------------------FPLEVPTYPNLWKGAYSK---WERYTVED 265 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~----------------------~rle~~~~P~l~~Ga~~~---~~~YT~~e 265 (552)
...-|.+-||.+..+++|.+||-..=+-+ |-+....|=.+ .|.|+. .+.-+.+|
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfap-e~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFAL-SGMYSEDPKDPELRIAE 556 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCccc-ccccccCCcCccccHHH
Confidence 34555666899999999999886542111 22211111000 122211 11123589
Q ss_pred HHHHHHHHHHcCCEEEEeecCCCccchH---hhhCCCCC----C-----CCCCCCCCCCCChhHHHHHHHHHHHHHhhC
Q 008821 266 AHEIVSFAKMRGINVMAEVDVPGHAESW---GAGYPNLW----P-----SPSCREPLDVSKNFTFEVISGILSDLRKIF 332 (552)
Q Consensus 266 i~elv~yA~~rgI~VIPEiD~PGH~~a~---~~~yp~l~----~-----~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF 332 (552)
+|++|+-|.++||+||-.+ ++.|+... ....|... . ...|...++..++.+.+++.+.+.-.++-|
T Consensus 557 fK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey 634 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEF 634 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 88998532 11223221 0 112334577778888888888887777654
No 49
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=82.01 E-value=5 Score=45.12 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCC---ccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQ---SFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq---~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~P 287 (552)
.+.-|.+-||.++.+++|.+++-.--.. .+.+....|=.+. ..+=|.+|+++||+-|.++||+||-.+ ++
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd------~~~Gt~~df~~Lv~~ah~~Gi~vilD~-V~ 98 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAIL------PEFGTIDDFKDFVDEAHARGMRVIIDL-VL 98 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccC------hhhCCHHHHHHHHHHHHHCCCEEEEEe-cc
Confidence 4677788899999999999888432100 1111111111110 111278999999999999999999999 89
Q ss_pred Cccc
Q 008821 288 GHAE 291 (552)
Q Consensus 288 GH~~ 291 (552)
.|+.
T Consensus 99 NH~s 102 (539)
T TIGR02456 99 NHTS 102 (539)
T ss_pred CcCC
Confidence 9985
No 50
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=81.74 E-value=9.4 Score=39.52 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCC--CccccCCCCCCCCCHHHHHHHH
Q 008821 193 KPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP--NLWKGAYSKWERYTVEDAHEIV 270 (552)
Q Consensus 193 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P--~l~~Ga~~~~~~YT~~ei~elv 270 (552)
-|++.+ |++.--- .+.+-+.++++++.+...++..=.+.+-++ |- ..+- ..+- ....|. |.++++
T Consensus 6 ~P~wa~-G~~~~~~-~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~--w~---~~~~~~~f~~----d~~~FP--d~~~~i 72 (308)
T cd06593 6 PPAWSF-GLWLSRS-FYYDEEEVNEFADGMRERNLPCDVIHLDCF--WM---KEFQWCDFEF----DPDRFP--DPEGML 72 (308)
T ss_pred CchHHH-HHHHHcc-cCCCHHHHHHHHHHHHHcCCCeeEEEEecc--cc---cCCcceeeEE----CcccCC--CHHHHH
Confidence 366666 6654332 357899999999999999988776666443 21 0110 1110 011222 578999
Q ss_pred HHHHHcCCEEEEeecCCCcc-c--hHhhh-CCCC-C--CC---------CCCCCCCCCCChhHHHHHHHHHHHHHhh
Q 008821 271 SFAKMRGINVMAEVDVPGHA-E--SWGAG-YPNL-W--PS---------PSCREPLDVSKNFTFEVISGILSDLRKI 331 (552)
Q Consensus 271 ~yA~~rgI~VIPEiD~PGH~-~--a~~~~-yp~l-~--~~---------~~~~~~l~~~~~~t~~fl~~vl~E~~~l 331 (552)
+..+++|++++.-++ |.=. . ..... .+++ . .+ +.....+|.+||++.++..+.++++.+.
T Consensus 73 ~~l~~~G~~~~~~~~-P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 148 (308)
T cd06593 73 SRLKEKGFKVCLWIN-PYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDM 148 (308)
T ss_pred HHHHHCCCeEEEEec-CCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999875 4210 0 01110 0111 0 00 0112358999999999999999988763
No 51
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=81.66 E-value=13 Score=46.12 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=67.3
Q ss_pred HHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc-c------c-----CCCCCCCC---CHHHHHHHHHHHHHcCCEEE
Q 008821 217 QIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-K------G-----AYSKWERY---TVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 217 ~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~-~------G-----a~~~~~~Y---T~~ei~elv~yA~~rgI~VI 281 (552)
+.|+.+..+++|.+++=..-. ......+. . | -+.....| |.+|+|++|+-|.++||+||
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~------~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VI 264 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFA------SVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVI 264 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccc------cCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEE
Confidence 567889999999888743211 11101100 0 1 11233345 79999999999999999999
Q ss_pred EeecCCCccchHhhhCCCC-------------CC--------CCCCCCCCCCCChhHHHHHHHHHHHHHh
Q 008821 282 AEVDVPGHAESWGAGYPNL-------------WP--------SPSCREPLDVSKNFTFEVISGILSDLRK 330 (552)
Q Consensus 282 PEiD~PGH~~a~~~~yp~l-------------~~--------~~~~~~~l~~~~~~t~~fl~~vl~E~~~ 330 (552)
-.+ ++.|+..-....|.+ .+ ...|.+.+|..+|.+.+++.+.++-...
T Consensus 265 LDv-V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 265 LDV-VFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred EEE-ccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 999 889986321111111 00 0123445777889999888888877766
No 52
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=80.87 E-value=7.3 Score=44.01 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEee---cCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHII---DEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~Hlt---Ddq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~P 287 (552)
.+.-|.+-||.++..++|.+++-.- ....+.+....|=.+ ...+=|.+|+++||+-|.++||.||-.+ ++
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~i------d~~~Gt~~d~~~lv~~~h~~gi~vilD~-V~ 103 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAI------DPTYGTLDDFDELVAQAKSRGIRIILDM-VF 103 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCc------CcccCCHHHHHHHHHHHHHCCCEEEEEE-CC
Confidence 4667778899999999999888432 000111111111111 1122289999999999999999999999 89
Q ss_pred Cccch
Q 008821 288 GHAES 292 (552)
Q Consensus 288 GH~~a 292 (552)
.|+..
T Consensus 104 NH~s~ 108 (551)
T PRK10933 104 NHTST 108 (551)
T ss_pred CCccC
Confidence 99864
No 53
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=79.03 E-value=5.3 Score=45.78 Aligned_cols=107 Identities=20% Similarity=0.285 Sum_probs=69.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeecCC-----ccccccCCCCCccccCCCCCCCC-CHH------HHHHHHHHHHHcCCEEEE
Q 008821 215 IKQIIESMSYAKLNVLHWHIIDEQ-----SFPLEVPTYPNLWKGAYSKWERY-TVE------DAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 215 lk~~Id~ma~~KlN~lh~HltDdq-----~~rle~~~~P~l~~Ga~~~~~~Y-T~~------ei~elv~yA~~rgI~VIP 282 (552)
..+.+..+..+++|.+||-..=.. +|.+....+ +++..+| |.+ |+|++|+-|..+||.|+-
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nF-------FapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlL 329 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNF-------FAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLL 329 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEe-------ecccccccCCCcccchHHHHHHHHHHhhCCcEEeh
Confidence 456677888889999999654332 222211110 1222223 566 999999999999999999
Q ss_pred eecCCCccchHhhhCCC--C---------------CCCCCCCCCCCCCChhHHHHHHHHHHHHHh
Q 008821 283 EVDVPGHAESWGAGYPN--L---------------WPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (552)
Q Consensus 283 EiD~PGH~~a~~~~yp~--l---------------~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~ 330 (552)
+| +-.|+.. ....|. + .....|...+|...+++.+||-+=++=...
T Consensus 330 DV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVt 392 (757)
T KOG0470|consen 330 DV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVT 392 (757)
T ss_pred hh-hhhhccc-CcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 98 7788875 221211 1 111235667899999999998776655544
No 54
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=78.44 E-value=1.2e+02 Score=35.23 Aligned_cols=159 Identities=13% Similarity=0.076 Sum_probs=88.1
Q ss_pred cccceecCCCCCCC-----HHHHHHHHHHHHhCCCcEEEEEeecC---CccccccCCCCCcc-ccCCCCCCCCCHHHHHH
Q 008821 198 FRGLLIDTSRHYLP-----VDVIKQIIESMSYAKLNVLHWHIIDE---QSFPLEVPTYPNLW-KGAYSKWERYTVEDAHE 268 (552)
Q Consensus 198 ~RG~mlD~aR~f~~-----~~~lk~~Id~ma~~KlN~lh~HltDd---q~~rle~~~~P~l~-~Ga~~~~~~YT~~ei~e 268 (552)
.|-+|+|.---+-| .+.|-.+||.|...|+|++-++.--| .|. +.+.-+|.=. .| ....|++=.+
T Consensus 314 ~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~-~~s~yfP~~~lp~---r~d~f~~~aw-- 387 (671)
T PRK14582 314 QRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGL-VKELYFPNRLLPM---RADLFNRVAW-- 387 (671)
T ss_pred EEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcc-ccccccCcccccc---ccCCcCHHHH--
Confidence 45667765433322 46688999999999999999987221 111 1122233200 11 1122333222
Q ss_pred HHHHHHHcCCEEEEeecCCCccc-----hHhhhCCCCCC---CCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeC
Q 008821 269 IVSFAKMRGINVMAEVDVPGHAE-----SWGAGYPNLWP---SPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLG 340 (552)
Q Consensus 269 lv~yA~~rgI~VIPEiD~PGH~~-----a~~~~yp~l~~---~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiG 340 (552)
..|.++||+|---+.+-+=.. ......+...+ .+.....|+|.+|++.++|++|+.|++.-.+-.=||+-
T Consensus 388 --~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~ 465 (671)
T PRK14582 388 --QLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH 465 (671)
T ss_pred --HHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEec
Confidence 128889999976554443211 00000011110 01112349999999999999999999987776667776
Q ss_pred CCCcCCcCCCCCHHHHHHHHHcCC
Q 008821 341 GDEVNTDCWSSTPHVKKWLRDHKL 364 (552)
Q Consensus 341 gDEv~~~~w~~~p~~~~~~~~~g~ 364 (552)
-|=+-..-=..+|...+..++.|+
T Consensus 466 Dd~~l~d~ed~s~~a~~~~~~~g~ 489 (671)
T PRK14582 466 DDAVLSDYEDASAPAITAYQQAGF 489 (671)
T ss_pred ccccccccccCCHHHHHHHHHcCC
Confidence 665543322345655455555665
No 55
>PLN00196 alpha-amylase; Provisional
Probab=74.37 E-value=15 Score=40.07 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeec----CCccccccCCCCCccccCCCCC--CCCCHHHHHHHHHHHHHcCCEEEEeec
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIID----EQSFPLEVPTYPNLWKGAYSKW--ERYTVEDAHEIVSFAKMRGINVMAEVD 285 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltD----dq~~rle~~~~P~l~~Ga~~~~--~~YT~~ei~elv~yA~~rgI~VIPEiD 285 (552)
...|.+-|+.++..+++.+.+=.-- ++|+- | ..-|.-+ .+=|.+|+++||+-|.++||+||-.+
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~------~---~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv- 112 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYM------P---GRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI- 112 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC------c---cccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE-
Confidence 4557888999999999998874311 11110 0 0001111 23389999999999999999999999
Q ss_pred CCCccch
Q 008821 286 VPGHAES 292 (552)
Q Consensus 286 ~PGH~~a 292 (552)
++.|+.+
T Consensus 113 V~NH~~~ 119 (428)
T PLN00196 113 VINHRTA 119 (428)
T ss_pred CccCccc
Confidence 8999874
No 56
>PLN02877 alpha-amylase/limit dextrinase
Probab=73.68 E-value=48 Score=39.94 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecCCCccc
Q 008821 263 VEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (552)
Q Consensus 263 ~~ei~elv~yA~~rgI~VIPEiD~PGH~~ 291 (552)
..|+|++|+-+.++||+||..+ ++-|+.
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~ 492 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLH 492 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCcccc
Confidence 4799999999999999999998 899985
No 57
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=72.94 E-value=13 Score=47.19 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecC----CccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDE----QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 208 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDd----q~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
.=++.+.+.+.|+.++.+++|.+.+-.-=. ..+.+.+..|-.+. ..+=|.++++.|++-|+++||.||-.
T Consensus 753 ~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id------p~lG~~edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 753 KDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN------PEIGGEEGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999766632100 01111111221111 11227999999999999999999999
Q ss_pred ecCCCccc
Q 008821 284 VDVPGHAE 291 (552)
Q Consensus 284 iD~PGH~~ 291 (552)
| +|.|+.
T Consensus 827 i-V~NH~~ 833 (1693)
T PRK14507 827 I-VPNHMG 833 (1693)
T ss_pred e-cccccC
Confidence 9 999997
No 58
>PLN03244 alpha-amylase; Provisional
Probab=71.57 E-value=11 Score=43.86 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHh----h---hCCCCC-C-C--C----CCCCCCCCCChhHHHHHHHH
Q 008821 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWG----A---GYPNLW-P-S--P----SCREPLDVSKNFTFEVISGI 324 (552)
Q Consensus 260 ~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~----~---~yp~l~-~-~--~----~~~~~l~~~~~~t~~fl~~v 324 (552)
+=|.+|+|.||+-|.++||.||-.+ +++|+..-. . .-+.+. . . + -....+|..++++.+|+-+.
T Consensus 437 YGTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsn 515 (872)
T PLN03244 437 YGTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISN 515 (872)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHH
Confidence 3489999999999999999999999 899986311 1 112110 0 0 0 01235889999999999998
Q ss_pred HHHHHhhC
Q 008821 325 LSDLRKIF 332 (552)
Q Consensus 325 l~E~~~lF 332 (552)
+.-..+-|
T Consensus 516 a~yWleEy 523 (872)
T PLN03244 516 LNWWITEY 523 (872)
T ss_pred HHHHHHHh
Confidence 88887654
No 59
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.32 E-value=23 Score=37.03 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=73.2
Q ss_pred CCCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccc---cCCCCCccccCCCCCCCCCHHHHHHH
Q 008821 193 KPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLE---VPTYPNLWKGAYSKWERYTVEDAHEI 269 (552)
Q Consensus 193 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle---~~~~P~l~~Ga~~~~~~YT~~ei~el 269 (552)
-|++.+ |++.-- -.+.+-+.+.++++.+...++-+=.+++.+ +|--. -..+-.++ + ....|. |.+++
T Consensus 6 ~P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~--~w~~~~~~~~~~~~f~---w-d~~~FP--dp~~m 75 (317)
T cd06598 6 PPRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDL--YWFGKDIDKGHMGNLD---W-DRKAFP--DPAGM 75 (317)
T ss_pred CchHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEec--hhhcCcccCCceeeeE---e-ccccCC--CHHHH
Confidence 466666 776433 235678999999999999888754444432 22100 00011111 0 112232 56889
Q ss_pred HHHHHHcCCEEEEeecCCC-ccc------hHhhhCCCCCCC-----------CCCCCCCCCCChhHHHHHHHHHHHHHh
Q 008821 270 VSFAKMRGINVMAEVDVPG-HAE------SWGAGYPNLWPS-----------PSCREPLDVSKNFTFEVISGILSDLRK 330 (552)
Q Consensus 270 v~yA~~rgI~VIPEiD~PG-H~~------a~~~~yp~l~~~-----------~~~~~~l~~~~~~t~~fl~~vl~E~~~ 330 (552)
++.-+++||+|++-++ |+ ... ...+.|= +... ......+|.+||++.+...+.++++.+
T Consensus 76 i~~L~~~G~k~~~~v~-P~v~~~~~~y~e~~~~g~l-~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 152 (317)
T cd06598 76 IADLAKKGVKTIVITE-PFVLKNSKNWGEAVKAGAL-LKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID 152 (317)
T ss_pred HHHHHHcCCcEEEEEc-CcccCCchhHHHHHhCCCE-EEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999885 32 111 0001110 0000 011236899999999999999988744
No 60
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.29 E-value=29 Score=35.92 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 008821 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSK-WERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (552)
Q Consensus 208 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~-~~~YT~~ei~elv~yA~~rgI~VIPEiD~ 286 (552)
..++-+.|+++++.|..+++..=.+++-|+ |- +.+ |.+.. ...+. +.+++++.-+++|+++++-|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~~~-----g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~- 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDN--WE---TCY-----GDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH- 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCC--cc---ccC-----CccccChhhCC--CHHHHHHHHHHCCCeEEEEEC-
Confidence 457789999999999999987555555332 31 111 11111 12333 589999999999999998775
Q ss_pred CCccchHhhhCCC------CCC--CC----------CCCCCCCCCChhHHHHHHHHHHHHH
Q 008821 287 PGHAESWGAGYPN------LWP--SP----------SCREPLDVSKNFTFEVISGILSDLR 329 (552)
Q Consensus 287 PGH~~a~~~~yp~------l~~--~~----------~~~~~l~~~~~~t~~fl~~vl~E~~ 329 (552)
|.-... ...|.+ +.. ++ .....+|.+||++.+...+.++++.
T Consensus 92 P~i~~~-s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 92 PFINTD-SENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred CeeCCC-CHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 432210 011111 110 00 1123589999999999999999887
No 61
>PLN02187 rooty/superroot1
Probab=70.93 E-value=10 Score=41.80 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||++++++|++.|+++||-||-
T Consensus 218 G~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 218 GNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCccCHHHHHHHHHHHHHCCCEEEE
Confidence 4579999999999999999987764
No 62
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=70.22 E-value=14 Score=42.15 Aligned_cols=70 Identities=13% Similarity=0.222 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCcEEEEEeecCC----ccccccCCCCCccccCCC------CCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 008821 216 KQIIESMSYAKLNVLHWHIIDEQ----SFPLEVPTYPNLWKGAYS------KWERYTVEDAHEIVSFAKMRGINVMAEVD 285 (552)
Q Consensus 216 k~~Id~ma~~KlN~lh~HltDdq----~~rle~~~~P~l~~Ga~~------~~~~YT~~ei~elv~yA~~rgI~VIPEiD 285 (552)
..+-|.+...+++.+|+-..-.. ||.+- |.. .|.|. ...+=|.+|+++|++-|.+|||+||-++
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~t----P~~-D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl- 150 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFT----PSI-DGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI- 150 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCC----CCC-CCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 34577888899999988543111 11110 111 12221 1223499999999999999999999998
Q ss_pred CCCccc
Q 008821 286 VPGHAE 291 (552)
Q Consensus 286 ~PGH~~ 291 (552)
+|+|+.
T Consensus 151 VpnHTs 156 (688)
T TIGR02455 151 IPAHTG 156 (688)
T ss_pred CCCCCC
Confidence 899986
No 63
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=69.63 E-value=11 Score=40.50 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+..||++++++|+++|++++|-||-.
T Consensus 177 Gav~~~~~l~~i~~~a~~~~i~ii~D 202 (393)
T COG0436 177 GAVYSKEELKAIVELAREHDIIIISD 202 (393)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEe
Confidence 45799999999999999999998864
No 64
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=69.41 E-value=2.6 Score=43.50 Aligned_cols=128 Identities=12% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCCeEEEEecCCCccceeeEEEEEcCchhhhHHHHHHHHhhccCCCCceeEeeccceEEEcCCCC-ccccceecCCCCCC
Q 008821 132 DESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRF-AFRGLLIDTSRHYL 210 (552)
Q Consensus 132 ~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~i~~~~~~I~D~P~f-~~RG~mlD~aR~f~ 210 (552)
.+.|.+.+++.. |.++-.+..++||..--|---- .++..+.+.+|- +|.| .|-+..||- -+|+
T Consensus 88 ~~~ygwnit~~N-------IalTnGSQs~fFYlfNlF~G~~-sdG~~k~illPL-------aPeYiGY~d~~l~~-d~fV 151 (417)
T COG3977 88 RREYGWNITAQN-------IALTNGSQSAFFYLFNLFAGRR-SDGTEKKILLPL-------APEYIGYADAGLEE-DLFV 151 (417)
T ss_pred HHHhCCCCccce-------eeecCCccchHHHHHHHhcCcc-CCCcceeEeecc-------ChhhccccccccCc-ccee
Confidence 578889998875 8999999999999887554322 233334444553 4554 355555543 2455
Q ss_pred CHHHHHHHHHHHHh--CCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 211 PVDVIKQIIESMSY--AKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 211 ~~~~lk~~Id~ma~--~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+..-=.++++ -.. |....=|+|.+++-|--.- +-|- ...+.++|.+|++.|.+.|+++||-+|-.
T Consensus 152 s~kP~iel~~-~g~FKY~vDF~~l~i~e~~g~ic~--SRPt-----NPTGNVlTdeE~~kldalA~~~giPliID 218 (417)
T COG3977 152 SAKPNIELLP-AGQFKYHVDFEHLHIGESTGAICV--SRPT-----NPTGNVLTDEELAKLDALARQHGIPLIID 218 (417)
T ss_pred eccCCccccc-ccceeeccCHHHcccccccceEEe--cCCC-----CCCCCcccHHHHHHHHHHhhhcCCcEEEe
Confidence 4211111111 222 2333446666555442211 1121 11357899999999999999999998864
No 65
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=69.07 E-value=53 Score=35.68 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=76.7
Q ss_pred CCCCccccceecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHH
Q 008821 193 KPRFAFRGLLIDTSRH-YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVS 271 (552)
Q Consensus 193 ~P~f~~RG~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~ 271 (552)
-|++.+ |+++ +|. +.+.+.++++|+.|...++-.=.+++.++-+. .+..++ + ....+. +.+++++
T Consensus 25 pP~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-----~~~~f~---~-d~~~FP--d~~~~~~ 90 (441)
T PF01055_consen 25 PPRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-----GYGDFT---W-DPERFP--DPKQMID 90 (441)
T ss_dssp --GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-----TTBTT----B--TTTTT--THHHHHH
T ss_pred Cchhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCccceeccccccc-----cccccc---c-cccccc--chHHHHH
Confidence 477777 9988 554 45799999999999999999777776554211 121221 0 112232 8899999
Q ss_pred HHHHcCCEEEEeecCCCccch-----H--hhhCCCCCCCCC-----------CCCCCCCCChhHHHHHHHHHHHHHhhCC
Q 008821 272 FAKMRGINVMAEVDVPGHAES-----W--GAGYPNLWPSPS-----------CREPLDVSKNFTFEVISGILSDLRKIFP 333 (552)
Q Consensus 272 yA~~rgI~VIPEiD~PGH~~a-----~--~~~yp~l~~~~~-----------~~~~l~~~~~~t~~fl~~vl~E~~~lF~ 333 (552)
..+++||++++-++--=+..+ . ....--+..+.. ....+|.++|++.++..+.++++.+.+.
T Consensus 91 ~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G 170 (441)
T PF01055_consen 91 ELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG 170 (441)
T ss_dssp HHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST
T ss_pred hHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC
Confidence 999999999887643111111 1 011111111111 1235899999999999999999888754
Q ss_pred CCeeee
Q 008821 334 FELFHL 339 (552)
Q Consensus 334 ~~~iHi 339 (552)
-..+=+
T Consensus 171 vdg~w~ 176 (441)
T PF01055_consen 171 VDGWWL 176 (441)
T ss_dssp -SEEEE
T ss_pred CceEEe
Confidence 443333
No 66
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=69.03 E-value=11 Score=42.43 Aligned_cols=222 Identities=14% Similarity=0.166 Sum_probs=105.9
Q ss_pred EcCCCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCcc--ccCCC--CCCCCCHHHH
Q 008821 191 QDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW--KGAYS--KWERYTVEDA 266 (552)
Q Consensus 191 ~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~--~Ga~~--~~~~YT~~ei 266 (552)
.|+-+||--|++=|..-. .+.+..++.|+.|+.|.+|.++++ |--||-..|-.+.-. ...|. .+...+.+-|
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~V 172 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTV 172 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCcCCCCCCchhhhhhhhcCCEehHHHH
Confidence 589999999999664333 345889999999999999999975 444443322111110 00111 1234678889
Q ss_pred HHHHHHHHHcCCEEEEeecCCCccchHhh--hCCC--CC--CCC---------C--C--CCCCCCCChhHHHHHHHHHHH
Q 008821 267 HEIVSFAKMRGINVMAEVDVPGHAESWGA--GYPN--LW--PSP---------S--C--REPLDVSKNFTFEVISGILSD 327 (552)
Q Consensus 267 ~elv~yA~~rgI~VIPEiD~PGH~~a~~~--~yp~--l~--~~~---------~--~--~~~l~~~~~~t~~fl~~vl~E 327 (552)
|+.|+.|+++|+..++=.-+-|=...... ..|+ |. ... . . .--+||+|++=...+-+=+.+
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~ 252 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNK 252 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999998655543322111 1111 00 000 0 0 113689999877787777777
Q ss_pred HHhhCCCCeeee---CCCCcCCcCCCCCHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHhcCCeeeEecccccccC----
Q 008821 328 LRKIFPFELFHL---GGDEVNTDCWSSTPHVKKWLRDHKL-TAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFA---- 399 (552)
Q Consensus 328 ~~~lF~~~~iHi---GgDEv~~~~w~~~p~~~~~~~~~g~-~~~~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~---- 399 (552)
+.+.|.-.=||| | +-...-.++.. .. ...+.|..|++++.+.+ ....++=+.+-. ++
T Consensus 253 ~~~~~gFDG~hlDq~G-~~~~~~d~~G~----------~i~~l~~~y~~Fi~~~K~~~---~~k~lv~N~V~~-~g~~~~ 317 (559)
T PF13199_consen 253 AIQNFGFDGWHLDQLG-NRGTVYDYDGN----------KIYDLSDGYASFINAMKEAL---PDKYLVFNAVSG-YGIEQI 317 (559)
T ss_dssp HHHHHT--EEEEE-S---EEEEGGTT-------------GGECHHHHHHHHHHHHHHS---TTSEEEEB-GGG-TTHHHH
T ss_pred HHHccCCceEeeeccC-CCCccccCCCC----------CchhhHHHHHHHHHHHHHhC---CCCceeeeccCc-cchhhh
Confidence 777776666665 3 11111011110 01 12477889998887755 223355454321 11
Q ss_pred -CCCCCCeE-EEEeCCCCc-------hHH---HH-HcCCcEEEeC
Q 008821 400 -SNLNPRTV-VHNWLGGGV-------CPK---AV-AKGFRCIYSN 431 (552)
Q Consensus 400 -~~l~~~~i-v~~W~~~~~-------~~~---~~-~~G~~vI~s~ 431 (552)
..-+-|.+ ...|..... +.+ .. +.|-.+|++.
T Consensus 318 a~~~~~d~lY~EvW~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AA 362 (559)
T PF13199_consen 318 AKTSKVDFLYNEVWDDYDTYGDLKRIIDQNRKYTSSGGKSTVVAA 362 (559)
T ss_dssp TT-S--SSEEEE--SBS-BHHHHHHHHHHHHHHH---S--EEEE-
T ss_pred hcccccceeeeecccccccHHHHHHHHHHHhhhhccccchhhhHH
Confidence 11222333 568954431 122 21 4477888875
No 67
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=68.00 E-value=28 Score=36.49 Aligned_cols=85 Identities=24% Similarity=0.338 Sum_probs=49.1
Q ss_pred EEcCCCCccccceecCCCCC--CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHH
Q 008821 190 IQDKPRFAFRGLLIDTSRHY--LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAH 267 (552)
Q Consensus 190 I~D~P~f~~RG~mlD~aR~f--~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~ 267 (552)
|.+.|-+-.=|-+ || +|.+...+.++.|...++|++..++- |.+- |...|.|.-.+ ..|++
T Consensus 4 ~~g~~~~~~~Ge~-----hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~----W~~h-----e~~~g~~df~g---~~dl~ 66 (319)
T PF01301_consen 4 IDGKPFFILSGEF-----HYFRIPPEYWRDRLQKMKAAGLNTVSTYVP----WNLH-----EPEEGQFDFTG---NRDLD 66 (319)
T ss_dssp ETTEEE-EEEEEE------GGGS-GGGHHHHHHHHHHTT-SEEEEE------HHHH-----SSBTTB---SG---GG-HH
T ss_pred ECCEEEEEEEeee-----ccccCChhHHHHHHHHHHhCCcceEEEecc----cccc-----CCCCCcccccc---hhhHH
Confidence 4444444444443 33 56888899999999999999998862 4331 11234332221 36999
Q ss_pred HHHHHHHHcCCEEEEeecCCCccc
Q 008821 268 EIVSFAKMRGINVMAEVDVPGHAE 291 (552)
Q Consensus 268 elv~yA~~rgI~VIPEiD~PGH~~ 291 (552)
.+++.|+++|+-||--+----|++
T Consensus 67 ~f~~~a~~~gl~vilrpGpyi~aE 90 (319)
T PF01301_consen 67 RFLDLAQENGLYVILRPGPYICAE 90 (319)
T ss_dssp HHHHHHHHTT-EEEEEEES---TT
T ss_pred HHHHHHHHcCcEEEecccceeccc
Confidence 999999999999987654444554
No 68
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=67.90 E-value=11 Score=40.99 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..|+.+++++|++.|+++||-||-
T Consensus 204 G~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 204 GSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4579999999999999999998774
No 69
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=64.76 E-value=9.5 Score=38.00 Aligned_cols=76 Identities=11% Similarity=-0.073 Sum_probs=49.4
Q ss_pred ccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 008821 197 AFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (552)
Q Consensus 197 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~r 276 (552)
..||.+++..+..-..+.+++.|+.++..+..++..+.. ..-+.....+. .....+.++++++||+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~g----~~~~~~~~~~~--------~~~~~~~l~~l~~~A~~~ 135 (254)
T TIGR03234 68 GERGIACLPGREEEFREGVALAIAYARALGCPQVNCLAG----KRPAGVSPEEA--------RATLVENLRYAADALDRI 135 (254)
T ss_pred CCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECcC----CCCCCCCHHHH--------HHHHHHHHHHHHHHHHhc
Confidence 356666655544323678999999999999998876531 11000000000 012346799999999999
Q ss_pred CCEEEEee
Q 008821 277 GINVMAEV 284 (552)
Q Consensus 277 gI~VIPEi 284 (552)
||++.-|-
T Consensus 136 gi~l~lE~ 143 (254)
T TIGR03234 136 GLTLLIEP 143 (254)
T ss_pred CCEEEEEE
Confidence 99999995
No 70
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=63.97 E-value=53 Score=35.37 Aligned_cols=143 Identities=19% Similarity=0.298 Sum_probs=85.4
Q ss_pred EEEEEcCchhhhHHHHHHHHhhccCCCCceeEeeccceEEEcCCCCcc---------ccceecCCCCC-CCHHHHHHHHH
Q 008821 151 ATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAF---------RGLLIDTSRHY-LPVDVIKQIIE 220 (552)
Q Consensus 151 i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~i~~~~~~I~D~P~f~~---------RG~mlD~aR~f-~~~~~lk~~Id 220 (552)
|-+++ ||-.|+.++++|+-.+...+ +-|| |--+|-|.= -...||-.++| +.++.|++.++
T Consensus 139 I~LT~----GAS~ai~~il~l~~~~~~~G-vliP-----iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~ 208 (475)
T KOG0258|consen 139 IFLTT----GASPAIRSILSLLIAGKKTG-VLIP-----IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVD 208 (475)
T ss_pred eeecC----CCcHHHHHHHHHHhcCCCCc-eEee-----cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHH
Confidence 67764 67778899999987665443 3344 334555531 12346666666 45667777766
Q ss_pred HHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCC
Q 008821 221 SMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNL 300 (552)
Q Consensus 221 ~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l 300 (552)
... -.+|.=-+-.- -|+-| .+...|.+-|++|+.+|++.|+-++..- .|-+-
T Consensus 209 eA~-k~i~~r~lvvI--------NPGNP--------TGqvls~e~ie~i~~fa~~~~l~llaDE-----------VYQ~N 260 (475)
T KOG0258|consen 209 EAR-KGINPRALVVI--------NPGNP--------TGQVLSEENIEGIICFAAEEGLVLLADE-----------VYQDN 260 (475)
T ss_pred HHh-ccCCceEEEEE--------CCCCc--------cchhhcHHHHHHHHHHHHHcCeEEechH-----------HHHhh
Confidence 655 44443222110 02222 3467999999999999999999988642 22211
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCC----eeeeCC
Q 008821 301 WPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFE----LFHLGG 341 (552)
Q Consensus 301 ~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~----~iHiGg 341 (552)
.+ .+.+-+-=.++++.|+.+-+++. -||-+.
T Consensus 261 --------vy--~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvS 295 (475)
T KOG0258|consen 261 --------VY--TTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVS 295 (475)
T ss_pred --------cc--CCCcchHhHHHHHHHhcCccCCceEEEeeeccc
Confidence 11 11223344688899998888743 355544
No 71
>PRK07681 aspartate aminotransferase; Provisional
Probab=63.41 E-value=20 Score=38.21 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||++++++|++.|+++++-||
T Consensus 180 G~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 180 PAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEE
Confidence 467999999999999999999776
No 72
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=63.01 E-value=88 Score=37.56 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCEEEEeecCCCccch
Q 008821 264 EDAHEIVSFAKMRGINVMAEVDVPGHAES 292 (552)
Q Consensus 264 ~ei~elv~yA~~rgI~VIPEiD~PGH~~a 292 (552)
+|+|++|+-|.++||+||-.+ ++-|+..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~~ 431 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTNA 431 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ecccccc
Confidence 699999999999999999999 8888764
No 73
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.64 E-value=24 Score=36.41 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=70.0
Q ss_pred CCCCccccceecCCC-CCCCHHHHHHHHHHHHhCCCcEEEEEeecC-Cccccc---cCCCCCccccCCCCCCCCCHHHHH
Q 008821 193 KPRFAFRGLLIDTSR-HYLPVDVIKQIIESMSYAKLNVLHWHIIDE-QSFPLE---VPTYPNLWKGAYSKWERYTVEDAH 267 (552)
Q Consensus 193 ~P~f~~RG~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lh~HltDd-q~~rle---~~~~P~l~~Ga~~~~~~YT~~ei~ 267 (552)
-|++.+ |++. +| .+.+-+.++++++.+...++-.=.+|+-++ ++++.. ...+-.++ + ....| -|.+
T Consensus 7 ~P~wal-G~~q--sr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft---~-d~~~F--Pdp~ 77 (292)
T cd06595 7 LPRYAF-GNWW--SRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYS---W-NRKLF--PDPE 77 (292)
T ss_pred CchHHH-HhHh--hCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeE---E-ChhcC--CCHH
Confidence 467777 8775 45 467899999999999998887555555222 111100 00111111 0 01122 2678
Q ss_pred HHHHHHHHcCCEEEEeecCCCccc-hHhhhCCCCCC------CCCCCCCCCCCChhHHHHH-HHHHHHH
Q 008821 268 EIVSFAKMRGINVMAEVDVPGHAE-SWGAGYPNLWP------SPSCREPLDVSKNFTFEVI-SGILSDL 328 (552)
Q Consensus 268 elv~yA~~rgI~VIPEiD~PGH~~-a~~~~yp~l~~------~~~~~~~l~~~~~~t~~fl-~~vl~E~ 328 (552)
++++.-++.|++||.-+ -|+... .-...|.++.. .......+|.++|++.+.. +.+.+.+
T Consensus 78 ~mi~~Lh~~G~k~v~~v-~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~ 145 (292)
T cd06595 78 KLLQDLHDRGLKVTLNL-HPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPL 145 (292)
T ss_pred HHHHHHHHCCCEEEEEe-CCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999877 444311 10011222210 0011126899999999854 4444443
No 74
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.29 E-value=8.1 Score=39.15 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
-.++.+++.|+.++..+.+.+-.|..... ... ....-....+-+++|+++|+++||+|.-|-
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~----------~~~---~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSYL----------GQS---KEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCC----------CCC---HHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 34788999999999999998888764211 000 000012346789999999999999999985
No 75
>PLN02368 alanine transaminase
Probab=62.09 E-value=16 Score=39.50 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+..||++++++|++.|+++++-||-.
T Consensus 224 G~v~s~e~l~~l~~~a~~~~~~II~D 249 (407)
T PLN02368 224 GQCLSEANLREILKFCYQERLVLLGD 249 (407)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 45799999999999999999988743
No 76
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=61.99 E-value=38 Score=36.27 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||.+++++|++.|+++++-||-
T Consensus 190 G~~~s~~~~~~l~~~a~~~~~~iI~ 214 (409)
T PRK07590 190 GTVLTKEQLKAWVDYAKENGSLILF 214 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 4579999999999999999997763
No 77
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=61.44 E-value=1.3e+02 Score=31.21 Aligned_cols=63 Identities=22% Similarity=0.272 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHH-HHHHHHHHH--hhCCC-
Q 008821 259 ERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEV-ISGILSDLR--KIFPF- 334 (552)
Q Consensus 259 ~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~f-l~~vl~E~~--~lF~~- 334 (552)
....+++++++-++++++||+++- |+..+ ..|+-.+|++.+. ++.+..++. +....
T Consensus 86 ~~~~~~~~~~~g~~~~~~~irls~------Hp~y~--------------inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~ 145 (303)
T PRK02308 86 IEPFKEELREIGEFIKEHNIRLSF------HPDQF--------------VVLNSPKPEVVENSIKDLEYHAKLLDLMGID 145 (303)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeec------cChhh--------------hcCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 347799999999999999998754 42211 1244456777765 455554442 22322
Q ss_pred ----CeeeeCC
Q 008821 335 ----ELFHLGG 341 (552)
Q Consensus 335 ----~~iHiGg 341 (552)
=.||.|+
T Consensus 146 ~~~~vViHpG~ 156 (303)
T PRK02308 146 DSSKINIHVGG 156 (303)
T ss_pred CCCEEEECCCc
Confidence 2589999
No 78
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=61.37 E-value=1.4e+02 Score=31.56 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecC-----CccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDE-----QSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 208 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDd-----q~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+|.+-+.++++++.+...++..=.+++.++ ..|.+.-..||.. ..+++|+.-+++||+|++
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp--------------~~~~mi~~L~~~G~k~~~ 84 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGL--------------KMPEFVDELHANGQHYVP 84 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCc--------------cHHHHHHHHHHCCCEEEE
Confidence 456899999999999999988655665322 1222222233322 338999999999999999
Q ss_pred eecCCCccchH-hhhCCCC---------CC--C---------CCCCCCCCCCChhHHHHHHHHHHHHHhh
Q 008821 283 EVDVPGHAESW-GAGYPNL---------WP--S---------PSCREPLDVSKNFTFEVISGILSDLRKI 331 (552)
Q Consensus 283 EiD~PGH~~a~-~~~yp~l---------~~--~---------~~~~~~l~~~~~~t~~fl~~vl~E~~~l 331 (552)
-|+ |+-...- ...|+.+ +. + +.....+|.+||++.+...+.++++.+-
T Consensus 85 ~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 85 ILD-PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ 153 (339)
T ss_pred EEe-CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc
Confidence 875 4432110 0001100 00 0 0112358999999999999988887653
No 79
>PRK05839 hypothetical protein; Provisional
Probab=61.16 E-value=52 Score=34.84 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..|+.+++++|++.|+++||-||-
T Consensus 169 G~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 169 GRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred CcccCHHHHHHHHHHHHHcCCEEEe
Confidence 4579999999999999999998873
No 80
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=61.15 E-value=22 Score=38.32 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||.+++++|++.|+++++-||-
T Consensus 184 G~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 184 GSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEEE
Confidence 4579999999999999999998773
No 81
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=60.85 E-value=1.3e+02 Score=31.78 Aligned_cols=132 Identities=15% Similarity=0.276 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhh
Q 008821 216 KQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGA 295 (552)
Q Consensus 216 k~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~ 295 (552)
+..++.|+.+++|..-+++=-| |. ..++.+.++..++.+.|++.|..|...+ |
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~----------P~-------~~g~~~~~~~~~~akrak~~Gm~vlldf----H------ 79 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN----------PY-------DGGYNDLEDVIALAKRAKAAGMKVLLDF----H------ 79 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-----------T-------TTTTTSHHHHHHHHHHHHHTT-EEEEEE-----------
T ss_pred CCHHHHHHhcCCCeEEEEeccC----------Cc-------ccccCCHHHHHHHHHHHHHCCCeEEEee----c------
Confidence 5688899999999998887333 21 1367899999999999999999999877 3
Q ss_pred hCCCCCCCCCC--------CCCCCCCChhHHHHHHHHHHHHHhhCC-CCeeeeCCCCcCCcCCCCCHHHHHHHHHcCCCh
Q 008821 296 GYPNLWPSPSC--------REPLDVSKNFTFEVISGILSDLRKIFP-FELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTA 366 (552)
Q Consensus 296 ~yp~l~~~~~~--------~~~l~~~~~~t~~fl~~vl~E~~~lF~-~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~ 366 (552)
|.+.+.++.. ...++-....+|+..++++.++.+.-- ...+-||-.=-..-.|.... ...
T Consensus 80 -YSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~----------~~~ 148 (332)
T PF07745_consen 80 -YSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK----------PSN 148 (332)
T ss_dssp -SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC----------TT-
T ss_pred -ccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC----------ccC
Confidence 5555432211 112233457889999999999987653 36788875333345663211 112
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 008821 367 KEAYQYFVLTAQKIAISKN 385 (552)
Q Consensus 367 ~~l~~~f~~~~~~~~~~~G 385 (552)
-+-+..+++...+-+++.+
T Consensus 149 ~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 149 WDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp HHHHHHHHHHHHHHHHTHS
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 2556677777777777643
No 82
>PTZ00377 alanine aminotransferase; Provisional
Probab=60.68 E-value=22 Score=39.14 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||.+++++|++.|+++++-||=
T Consensus 232 G~~~s~e~~~~i~~~a~~~~~~iI~ 256 (481)
T PTZ00377 232 GQVLTRDVMEEIIKFCYEKGIVLMA 256 (481)
T ss_pred CcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4579999999999999999997763
No 83
>PRK06348 aspartate aminotransferase; Provisional
Probab=58.82 E-value=23 Score=37.67 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..+|.+++++|++.|+++++-||
T Consensus 176 G~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 176 GAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred CcCCCHHHHHHHHHHHHHCCeEEE
Confidence 457999999999999999998776
No 84
>PRK09505 malS alpha-amylase; Reviewed
Probab=58.72 E-value=40 Score=39.20 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCC--ccccc--cCCCCCcc-ccCCC------CCCCCCHHHHHHHHHHHHHcCCEE
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQ--SFPLE--VPTYPNLW-KGAYS------KWERYTVEDAHEIVSFAKMRGINV 280 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq--~~rle--~~~~P~l~-~Ga~~------~~~~YT~~ei~elv~yA~~rgI~V 280 (552)
+.-|.+-||.++..++|.+.+-.-=.+ ++.-. ...+|.-. .|-+. ...+=|.+|+++||+-|.+|||+|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 777888899999999999887431110 00000 00011111 11110 112237899999999999999999
Q ss_pred EEeecCCCccc
Q 008821 281 MAEVDVPGHAE 291 (552)
Q Consensus 281 IPEiD~PGH~~ 291 (552)
|-.+ ++.|+.
T Consensus 309 ilD~-V~NH~~ 318 (683)
T PRK09505 309 LFDV-VMNHTG 318 (683)
T ss_pred EEEE-CcCCCc
Confidence 9999 889987
No 85
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=58.66 E-value=12 Score=35.95 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccc---cccCCCCCccccC--C------------CCCCCCCHHHHHHHHHHH
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFP---LEVPTYPNLWKGA--Y------------SKWERYTVEDAHEIVSFA 273 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~r---le~~~~P~l~~Ga--~------------~~~~~YT~~ei~elv~yA 273 (552)
+.+.+.++++.+...++..+.+.+++....+ .--+.||++..|+ - .....-+.....++++++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~~ 93 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKAA 93 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHH
Confidence 4788889999999999999999987664222 1124566553221 0 001112222346899999
Q ss_pred HHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCC-CCeeeeCCC
Q 008821 274 KMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP-FELFHLGGD 342 (552)
Q Consensus 274 ~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~-~~~iHiGgD 342 (552)
+.+|+.+||++.+|.++......-.++. .+.|..+...+ .++++...|| -+.+=+||=
T Consensus 94 ~~~~~~~i~gv~t~~e~~~A~~~Gad~i-------~~~p~~~~g~~----~~~~l~~~~~~~p~~a~GGI 152 (190)
T cd00452 94 NRAGIPLLPGVATPTEIMQALELGADIV-------KLFPAEAVGPA----YIKALKGPFPQVRFMPTGGV 152 (190)
T ss_pred HHcCCcEECCcCCHHHHHHHHHCCCCEE-------EEcCCcccCHH----HHHHHHhhCCCCeEEEeCCC
Confidence 9999999999998887755544222221 12344443333 4555667786 589999885
No 86
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=57.12 E-value=40 Score=41.99 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCc---cccccCCCCCccccCCCCCCC----CCHHHHHHHHHHHHHc-CCEEEEe
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQS---FPLEVPTYPNLWKGAYSKWER----YTVEDAHEIVSFAKMR-GINVMAE 283 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq~---~rle~~~~P~l~~Ga~~~~~~----YT~~ei~elv~yA~~r-gI~VIPE 283 (552)
.+...+.++.++..++|.+|+-.--..| =++.+..|=++ ...+ -|.+|++++|+-|.++ |+.+|-.
T Consensus 131 ~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~i------dP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 131 LSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQL------NQHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhc------ChhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5778889999999999999984311000 00000000000 1112 3789999999999996 9999999
Q ss_pred ecCCCccc---hHhhhCCCC
Q 008821 284 VDVPGHAE---SWGAGYPNL 300 (552)
Q Consensus 284 iD~PGH~~---a~~~~yp~l 300 (552)
+ +..|+. .|+..|||-
T Consensus 205 v-V~NHTa~ds~Wl~eHPEa 223 (1464)
T TIGR01531 205 I-VFNHTANNSPWLLEHPEA 223 (1464)
T ss_pred e-eecccccCCHHHHhChHh
Confidence 8 889986 488888874
No 87
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=57.05 E-value=40 Score=36.20 Aligned_cols=25 Identities=4% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..+|.+++++|++.|+++++-||-
T Consensus 191 G~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 191 GSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred CcccCHHHHHHHHHHHHHcCCeEEE
Confidence 3568999999999999999997763
No 88
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=56.69 E-value=42 Score=35.80 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..+|.+++++|++.|+++++-||=
T Consensus 186 G~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 186 GADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 4579999999999999999998764
No 89
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.54 E-value=31 Score=34.05 Aligned_cols=119 Identities=11% Similarity=0.087 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcccc---ccCCC---CCccccCCCCCCCCCHHHHH-----------------
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL---EVPTY---PNLWKGAYSKWERYTVEDAH----------------- 267 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rl---e~~~~---P~l~~Ga~~~~~~YT~~ei~----------------- 267 (552)
+.+...++.+.|..-++.++-+-++....... -.+.| |++..|+ +...|.+|++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGa---GTV~~~~~~~~a~~aGA~FivsP~~~~ 99 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGA---GTVLDAVTARLAILAGAQFIVSPSFNR 99 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEee---eeCCCHHHHHHHHHcCCCEEECCCCCH
Confidence 78999999999999999999999986543321 11345 5666554 4556666665
Q ss_pred HHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCC-CCeeeeCCCC
Q 008821 268 EIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFP-FELFHLGGDE 343 (552)
Q Consensus 268 elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~-~~~iHiGgDE 343 (552)
+++++|+++||-+||-.-+|.-.......-.++. -+-|...-..++ ++.+...|| -+++=+||=.
T Consensus 100 ~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~v-------klFPa~~~G~~~----ik~l~~~~p~ip~~atGGI~ 165 (213)
T PRK06552 100 ETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIV-------KLFPGSTLGPSF----IKAIKGPLPQVNVMVTGGVN 165 (213)
T ss_pred HHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEE-------EECCcccCCHHH----HHHHhhhCCCCEEEEECCCC
Confidence 7899999999999999988877655443222220 011222212223 555667788 5888888844
No 90
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=55.46 E-value=12 Score=35.26 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
++.+++.|+.++.++...+.+|... |+ ..+.... ...-....+-+++|+++|+++||+|..|-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~----~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YP----SGPEDDT---EENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ES----SSTTSSH---HHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---cc----cccCCCH---HHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 7899999999999999999999742 11 0111100 00011345679999999999999999995
No 91
>PRK08636 aspartate aminotransferase; Provisional
Probab=54.46 E-value=83 Score=33.62 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++++-||
T Consensus 189 G~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 189 TATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred CccCCHHHHHHHHHHHHHcCcEEE
Confidence 567999999999999999999877
No 92
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=54.36 E-value=91 Score=31.71 Aligned_cols=148 Identities=22% Similarity=0.333 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecCC-Cccc---hHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhC--CCCe
Q 008821 263 VEDAHEIVSFAKMRGINVMAEVDVP-GHAE---SWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIF--PFEL 336 (552)
Q Consensus 263 ~~ei~elv~yA~~rgI~VIPEiD~P-GH~~---a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF--~~~~ 336 (552)
.+|..++++-|++.||..+--+-+. .+.. ...+.||.++.. ..-.|.+ ..... ++-++++.++. ..+.
T Consensus 16 ~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~-~G~HP~~-~~~~~----~~~~~~l~~~~~~~~~v 89 (256)
T COG0084 16 DEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAA-VGVHPLD-ADEHS----EEDLEELEQLAEHHPKV 89 (256)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEE-EeeCCCc-ccccc----HHHHHHHHHHHhcCCCe
Confidence 4477889999999998865544332 2222 234578866321 0011222 11211 22333333333 3456
Q ss_pred eeeCCCCcCC-cCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCeee-----EecccccccC-CCCCCCeEEE
Q 008821 337 FHLGGDEVNT-DCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPV-----NWEETFNSFA-SNLNPRTVVH 409 (552)
Q Consensus 337 iHiGgDEv~~-~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~~~-----~W~d~~~~~~-~~l~~~~iv~ 409 (552)
+=|| |+-. -.|...+ ..+.|..++.+-.+.+++.++.++ .|+|.+.-.. ...+...|++
T Consensus 90 vaIG--EiGLDy~~~~~~------------~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~H 155 (256)
T COG0084 90 VAIG--EIGLDYYWDKEP------------DKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLH 155 (256)
T ss_pred EEEE--ecccCccccccc------------cHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEE
Confidence 6555 3321 1233322 124566666666677888888765 4555543211 1225667777
Q ss_pred EeCCC-CchHHHHHcCCcEEEe
Q 008821 410 NWLGG-GVCPKAVAKGFRCIYS 430 (552)
Q Consensus 410 ~W~~~-~~~~~~~~~G~~vI~s 430 (552)
.++|+ +.++++++.||-+=.+
T Consensus 156 cFsGs~e~a~~~~d~G~yisis 177 (256)
T COG0084 156 CFSGSAEEARKLLDLGFYISIS 177 (256)
T ss_pred ccCCCHHHHHHHHHcCeEEEEC
Confidence 66665 4678899999655444
No 93
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=54.30 E-value=1e+02 Score=33.75 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcc---ccccCCCCCccccCCCCCCCCCHHHHHHHHHHH-HHcCCEEEEeecC
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSF---PLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFA-KMRGINVMAEVDV 286 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~---rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA-~~rgI~VIPEiD~ 286 (552)
|.+...+.++..+..++|.+|+-.--.-|- ++.+...=++...-+....-++.++++++|.-+ +++||-.+-.| +
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-V 98 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-V 98 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE-e
Confidence 356788888999999999988843111110 011100000000001234457889999999998 58999999998 7
Q ss_pred CCccc---hHhhhCCCCC
Q 008821 287 PGHAE---SWGAGYPNLW 301 (552)
Q Consensus 287 PGH~~---a~~~~yp~l~ 301 (552)
.-|+. .|+..|||-+
T Consensus 99 ~NHtA~nS~Wl~eHPEag 116 (423)
T PF14701_consen 99 LNHTANNSPWLREHPEAG 116 (423)
T ss_pred eccCcCCChHHHhCcccc
Confidence 78885 5999999874
No 94
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=53.89 E-value=41 Score=35.82 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 008821 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (552)
Q Consensus 207 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~ 286 (552)
+..++.+.++++|+.++..+. ..++++ +++.+...|+.+|+++++++|+.+ .|.|
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~---------------------GGEPll~~~~~~il~~~~~~g~~~--~i~T 97 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFS---------------------GGEPLLRKDLEELVAHARELGLYT--NLIT 97 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEE---------------------CCccCCchhHHHHHHHHHHcCCcE--EEEC
Confidence 456889999999999987764 444443 233445668999999999999865 4666
Q ss_pred CCc
Q 008821 287 PGH 289 (552)
Q Consensus 287 PGH 289 (552)
=|.
T Consensus 98 NG~ 100 (378)
T PRK05301 98 SGV 100 (378)
T ss_pred CCc
Confidence 665
No 95
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=52.05 E-value=1.1e+02 Score=32.03 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHH
Q 008821 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFA 273 (552)
Q Consensus 194 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA 273 (552)
|++.+ |++.-- -.+.+-+.++++++.+..+++..=.+++..+ -|. -..+..++ + ....| -+.+++++..
T Consensus 7 P~wal-G~~~sr-~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~-~~~--~~~~~~f~---~-d~~~F--Pdp~~mi~~L 75 (319)
T cd06591 7 PKWAY-GFWQSK-ERYKTQEELLDVAKEYRKRGIPLDVIVQDWF-YWP--KQGWGEWK---F-DPERF--PDPKAMVREL 75 (319)
T ss_pred chHHH-HHHHhc-ccCCCHHHHHHHHHHHHHhCCCccEEEEech-hhc--CCCceeEE---E-ChhhC--CCHHHHHHHH
Confidence 44544 555422 2456899999999999999888666655322 110 00001121 0 01122 1578999999
Q ss_pred HHcCCEEEEeecCCCcc---chHhhhC-CCC-CCCC----------CCCCCCCCCChhHHHHHHHHHHH
Q 008821 274 KMRGINVMAEVDVPGHA---ESWGAGY-PNL-WPSP----------SCREPLDVSKNFTFEVISGILSD 327 (552)
Q Consensus 274 ~~rgI~VIPEiD~PGH~---~a~~~~y-p~l-~~~~----------~~~~~l~~~~~~t~~fl~~vl~E 327 (552)
+++||+||+-++ |+=. ..+.... ..+ ..+. .....+|.+||++.+...+.+++
T Consensus 76 ~~~G~kv~~~i~-P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 76 HEMNAELMISIW-PTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred HHCCCEEEEEec-CCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 999999998765 5411 1111000 000 0000 11236899999999987666654
No 96
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.75 E-value=14 Score=38.32 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHhhccCCCCceeEeeccceEEEcCCCCccccceecCC-CCCCCHHHHHHHHHHHHhCCCcEE
Q 008821 160 GALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTS-RHYLPVDVIKQIIESMSYAKLNVL 230 (552)
Q Consensus 160 G~~~glqTL~QLl~~~~~~~~~~i~~~~~~I~D~P~f~~RG~mlD~a-R~f~~~~~lk~~Id~ma~~KlN~l 230 (552)
|.+.-+++|.+++..-.. ..+....++++| .|+++|.--=.+ +.+++.++++++++..+..+++++
T Consensus 11 ~~~~~~~~lk~~id~ma~---~k~N~l~lhl~D--~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vI 77 (301)
T cd06565 11 NAVPKVSYLKKLLRLLAL---LGANGLLLYYED--TFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVI 77 (301)
T ss_pred CCCCCHHHHHHHHHHHHH---cCCCEEEEEEec--ceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 477888999998863211 112222357899 788888643222 689999999999999999999875
No 97
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=51.65 E-value=56 Score=33.74 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 208 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
..++++.|++.++....+.-+.=-+-++-. . ++ ..+..||.+|+++|.++|+++||.|.-
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t--------~--~~-----~GG~~~s~~el~ai~~~a~~~gl~lhm 163 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENT--------T--EL-----AGGTVYSLEELRAISELAREHGLPLHM 163 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESS--------B--TT-----TTSB---HHHHHHHHHHHHHHT-EEEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEec--------C--cC-----CCCeeCCHHHHHHHHHHHHhCceEEEE
Confidence 567999999999988774444333333211 0 00 135689999999999999999998843
No 98
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=51.42 E-value=89 Score=33.36 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||++++++|++.|+++++-||
T Consensus 187 G~~~s~~~~~~l~~~a~~~~~~iI 210 (402)
T TIGR03542 187 GTVLTKEQLKELVDYANEHGSLIL 210 (402)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEE
Confidence 568999999999999999999776
No 99
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=50.81 E-value=61 Score=34.25 Aligned_cols=24 Identities=33% Similarity=0.204 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++++-||
T Consensus 180 G~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 180 GAVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CCCCCHHHHHHHHHHHHHCCcEEE
Confidence 457999999999999999999776
No 100
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=50.65 E-value=1.3e+02 Score=34.96 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE-EeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee-cCC
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHW-HIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV-DVP 287 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~-HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi-D~P 287 (552)
+|-+.+++-|+.|...++|++-. .+ +|-+- -|+. |.|. +|.-|.. +++-|.+-|+.||--- -+.
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~f----aW~~~---eP~e--G~fd----f~~~D~~-~l~~a~~~Gl~vil~t~P~g 92 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYF----AWNLH---EPEE--GKFD----FTWLDEI-FLERAYKAGLYVILRTGPTG 92 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeE----Eeecc---Cccc--cccC----cccchHH-HHHHHHhcCceEEEecCCCC
Confidence 45688999999999999998776 54 24321 1332 3332 3333444 7999999999999765 345
Q ss_pred CccchHhhhCCCCCC--------CCCCCCCCCCCChhHHHHHHHHHHHHHhh-CCC----CeeeeCCCCcCC-cCC
Q 008821 288 GHAESWGAGYPNLWP--------SPSCREPLDVSKNFTFEVISGILSDLRKI-FPF----ELFHLGGDEVNT-DCW 349 (552)
Q Consensus 288 GH~~a~~~~yp~l~~--------~~~~~~~l~~~~~~t~~fl~~vl~E~~~l-F~~----~~iHiGgDEv~~-~~w 349 (552)
++...+.+.||+... .....+.+|++++--.+.+..|+..+++- +.. -.+|+-- |+.. .||
T Consensus 93 ~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-eY~~~~~~ 167 (673)
T COG1874 93 APPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-EYGGHPCY 167 (673)
T ss_pred CCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-ccCCcccc
Confidence 666667779998732 12234579999996677888888888775 421 3566654 6654 455
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=50.60 E-value=41 Score=35.46 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 008821 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (552)
Q Consensus 207 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~ 286 (552)
+..++.+.++++|+.+...+.- .++++- ++..-..|+.+|++||+++|+.+ .|.|
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~--~v~~~G---------------------GEPll~~~~~~ii~~~~~~g~~~--~l~T 88 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVL--QLHFSG---------------------GEPLARPDLVELVAHARRLGLYT--NLIT 88 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCc--EEEEeC---------------------ccccccccHHHHHHHHHHcCCeE--EEEe
Confidence 4568999999999999887654 444432 22333457899999999999864 5667
Q ss_pred CCcc
Q 008821 287 PGHA 290 (552)
Q Consensus 287 PGH~ 290 (552)
-|..
T Consensus 89 NG~l 92 (358)
T TIGR02109 89 SGVG 92 (358)
T ss_pred CCcc
Confidence 7753
No 102
>PTZ00376 aspartate aminotransferase; Provisional
Probab=50.59 E-value=89 Score=33.42 Aligned_cols=25 Identities=20% Similarity=0.036 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||.+++++|++.|+++++-||-
T Consensus 190 G~~~s~~~~~~l~~~a~~~~~~ii~ 214 (404)
T PTZ00376 190 GVDPTEEQWKEIADVMKRKNLIPFF 214 (404)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 4579999999999999999997663
No 103
>PRK07337 aminotransferase; Validated
Probab=50.34 E-value=41 Score=35.67 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+..+|.+|+++|++.|+++|+-||-+
T Consensus 177 G~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 177 GTSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred CcCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45799999999999999999977744
No 104
>PLN02656 tyrosine transaminase
Probab=50.10 E-value=44 Score=35.91 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++|+-||
T Consensus 183 G~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 183 GNVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 457999999999999999998776
No 105
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=49.98 E-value=45 Score=35.64 Aligned_cols=54 Identities=24% Similarity=0.317 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEE--EEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 211 PVDVIKQIIESMSYAKLNVLH--WHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh--~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
+.+..+++|+.|+.+++..+- +|+ ||-. ..-..+++++|+++|+++|++||..|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~i-------------pe~~-------~~~~~~~~~~l~~~a~~~~~~v~~Di 67 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHI-------------PEDD-------PEDYLERLKELLKLAKELGMEVIADI 67 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------------------------HHHHHHHHHHHHHHCT-EEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCc-------------CCCC-------HHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 788999999999999988543 443 2210 11247899999999999999999999
No 106
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=49.90 E-value=20 Score=38.37 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccc
Q 008821 257 KWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (552)
Q Consensus 257 ~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~ 291 (552)
.+.+||.+-+++|.+.|+++||.||-. +.-||+-
T Consensus 212 cGnVys~~HL~kiae~A~klgi~vIaD-EVY~~~v 245 (447)
T KOG0259|consen 212 CGNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHTV 245 (447)
T ss_pred CcccccHHHHHHHHHHHHHhCCeEEeh-hhcceee
Confidence 467999999999999999999999875 4677764
No 107
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.88 E-value=2.6e+02 Score=27.98 Aligned_cols=130 Identities=11% Similarity=0.167 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchH
Q 008821 214 VIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESW 293 (552)
Q Consensus 214 ~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~ 293 (552)
.+.+.|+.++.+++..+-+.+.+.. +.+ ...-++.+++++|.+.++++||.|. .+-+++|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~---------~~~------~~~~~~~~~~~~l~~~l~~~Gl~i~-~~~~~~~~~-- 78 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD---------ERL------ARLDWSKEERLSLVKAIYETGVRIP-SMCLSGHRR-- 78 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc---------ccc------ccccCCHHHHHHHHHHHHHcCCCce-EEecccccC--
Confidence 5788999999999999998754311 111 1123688899999999999999876 344455531
Q ss_pred hhhCCCCCCCCCCCCCCCCCCh----hHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCcCCCCCHHHHHHHHHcCCChHHH
Q 008821 294 GAGYPNLWPSPSCREPLDVSKN----FTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAKEA 369 (552)
Q Consensus 294 ~~~yp~l~~~~~~~~~l~~~~~----~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l 369 (552)
+| +.-.++ ++.+.++.+++ ++..+..+++-+++--.... ...+. ..+.
T Consensus 79 ---~~-----------~~~~d~~~r~~~~~~~~~~i~-~a~~lG~~~v~~~~~~~~~~--~~~~~-----------~~~~ 130 (284)
T PRK13210 79 ---FP-----------FGSRDPATRERALEIMKKAIR-LAQDLGIRTIQLAGYDVYYE--EKSEE-----------TRQR 130 (284)
T ss_pred ---cC-----------CCCCCHHHHHHHHHHHHHHHH-HHHHhCCCEEEECCcccccc--cccHH-----------HHHH
Confidence 11 111222 34555556553 34445556665543211110 00011 1133
Q ss_pred HHHHHHHHHHHHHhcCCeee
Q 008821 370 YQYFVLTAQKIAISKNWTPV 389 (552)
Q Consensus 370 ~~~f~~~~~~~~~~~G~~~~ 389 (552)
....++.+.++++++|.+..
T Consensus 131 ~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 131 FIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHHHHHHHHHHHHHhCCEEE
Confidence 44566677778888887644
No 108
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=49.08 E-value=51 Score=34.46 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=71.9
Q ss_pred CCCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCC-C--CccccCCCCCCCCCHHHHHHH
Q 008821 193 KPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTY-P--NLWKGAYSKWERYTVEDAHEI 269 (552)
Q Consensus 193 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~-P--~l~~Ga~~~~~~YT~~ei~el 269 (552)
-|++.+.+.+ +|.+.+-+.+.++++.|..+++-.=.+|+-|.....-...++ . ..+ + ....| -|.+++
T Consensus 6 ~P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~---~-d~~~F--Pdp~~m 76 (317)
T cd06594 6 LPDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWE---W-DPERY--PGLDEL 76 (317)
T ss_pred CchhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeE---E-ChhhC--CCHHHH
Confidence 4666666555 455559999999999999998876666663322110000000 0 000 0 01112 267899
Q ss_pred HHHHHHcCCEEEEeecCCCccchHhhhCCCC------CC--C---------CCCCCCCCCCChhHHHHHHHHHHHH
Q 008821 270 VSFAKMRGINVMAEVDVPGHAESWGAGYPNL------WP--S---------PSCREPLDVSKNFTFEVISGILSDL 328 (552)
Q Consensus 270 v~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l------~~--~---------~~~~~~l~~~~~~t~~fl~~vl~E~ 328 (552)
|+.-+++|++||+-|+ |+-...-...|.+. .. + +.....+|.+||++.+...+.++++
T Consensus 77 i~~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 77 IEELKARGIRVLTYIN-PYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred HHHHHHCCCEEEEEec-CceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHH
Confidence 9999999999999876 54221000000111 00 0 0112358889999999888887776
No 109
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=49.03 E-value=1.4e+02 Score=31.02 Aligned_cols=110 Identities=17% Similarity=0.278 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 008821 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (552)
Q Consensus 208 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~P 287 (552)
+|.+-+.+.++++.+..+++-.=.+++.++ | .+.+-.++ + ....|. |.+++++..+++||+|++-++ |
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~---~~~~~~f~---~-d~~~FP--dp~~~i~~l~~~g~k~~~~~~-P 86 (317)
T cd06600 19 SYYPQDKVVEVVDIMQKEGFPYDVVFLDIH--Y---MDSYRLFT---W-DPYRFP--EPKKLIDELHKRNVKLVTIVD-P 86 (317)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceEEEChh--h---hCCCCcee---e-chhcCC--CHHHHHHHHHHCCCEEEEEee-c
Confidence 456789999999999999998666666432 1 01121111 0 111222 678999999999999998763 3
Q ss_pred Ccc-----chHhhhCC-C-CCC--C---------CCCCCCCCCCChhHHHHHHHHHHHHH
Q 008821 288 GHA-----ESWGAGYP-N-LWP--S---------PSCREPLDVSKNFTFEVISGILSDLR 329 (552)
Q Consensus 288 GH~-----~a~~~~yp-~-l~~--~---------~~~~~~l~~~~~~t~~fl~~vl~E~~ 329 (552)
+-. ..+..+.. . ++. + +.....+|.+||++.+...+.++++.
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 87 GIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred cccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 211 11111110 0 110 0 00122589999999999999998875
No 110
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=48.79 E-value=76 Score=35.33 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||++++++|++.|++++|-||-
T Consensus 213 G~~~s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 213 GTMLDKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4579999999999999999997664
No 111
>PRK09265 aminotransferase AlaT; Validated
Probab=48.60 E-value=56 Score=34.91 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..++.+++++|++.|+++|+-||-
T Consensus 182 G~~~~~~~~~~i~~~a~~~~~~ii~ 206 (404)
T PRK09265 182 GAVYSKELLEEIVEIARQHNLIIFA 206 (404)
T ss_pred CcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4569999999999999999997764
No 112
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=47.85 E-value=2.1e+02 Score=29.95 Aligned_cols=128 Identities=19% Similarity=0.212 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccc
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~ 291 (552)
.+.-+|=|..|..++.|++..+-.|. .+ +=.+....-++-||=||-.++.|+.
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRVY~vdp-----------~~--------------nHd~CM~~~~~aGIYvi~Dl~~p~~-- 104 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRVYSVDP-----------SK--------------NHDECMSAFADAGIYVILDLNTPNG-- 104 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEES---T-----------TS----------------HHHHHHHHHTT-EEEEES-BTTB--
T ss_pred HHHHHHhHHHHHHcCCCEEEEEEeCC-----------CC--------------CHHHHHHHHHhCCCEEEEecCCCCc--
Confidence 56778899999999999999865443 21 2344555567789999999999944
Q ss_pred hHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCcCCCCCHHHHHHHHHcCCChHHHHH
Q 008821 292 SWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQ 371 (552)
Q Consensus 292 a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~ 371 (552)
++-+..|.- .. +..-++-...+++.++. |+.-.--.-|.||....= +...+....
T Consensus 105 sI~r~~P~~--------sw---~~~l~~~~~~vid~fa~-Y~N~LgFf~GNEVin~~~-------------~t~aap~vK 159 (314)
T PF03198_consen 105 SINRSDPAP--------SW---NTDLLDRYFAVIDAFAK-YDNTLGFFAGNEVINDAS-------------NTNAAPYVK 159 (314)
T ss_dssp S--TTS-----------------HHHHHHHHHHHHHHTT--TTEEEEEEEESSS-STT--------------GGGHHHHH
T ss_pred cccCCCCcC--------CC---CHHHHHHHHHHHHHhcc-CCceEEEEecceeecCCC-------------CcccHHHHH
Confidence 333333311 00 23344555555555443 455444455677754310 011224445
Q ss_pred HHHHHHHHHHHhcCCe--eeEe
Q 008821 372 YFVLTAQKIAISKNWT--PVNW 391 (552)
Q Consensus 372 ~f~~~~~~~~~~~G~~--~~~W 391 (552)
.+++.+..+++++|.| |++.
T Consensus 160 AavRD~K~Yi~~~~~R~IPVGY 181 (314)
T PF03198_consen 160 AAVRDMKAYIKSKGYRSIPVGY 181 (314)
T ss_dssp HHHHHHHHHHHHSSS----EEE
T ss_pred HHHHHHHHHHHhcCCCCCceeE
Confidence 6778888888888875 4554
No 113
>PLN02231 alanine transaminase
Probab=47.79 E-value=76 Score=35.75 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||++++++|++.|+++|+-||=
T Consensus 285 G~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 285 GQVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4679999999999999999997774
No 114
>PRK08068 transaminase; Reviewed
Probab=46.87 E-value=37 Score=36.02 Aligned_cols=24 Identities=33% Similarity=0.214 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++++-||
T Consensus 181 G~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 181 GAVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEE
Confidence 467999999999999999999777
No 115
>PRK06290 aspartate aminotransferase; Provisional
Probab=46.49 E-value=1.2e+02 Score=32.64 Aligned_cols=24 Identities=38% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++|+-||
T Consensus 193 G~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 193 GAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEE
Confidence 467999999999999999999666
No 116
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.63 E-value=70 Score=32.06 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
.++.+++.|+..+..+...+.+|.... ++.- ...+. -.-..+-+++|.++|+++||++.-|-
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~---~~~~~--------~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-GYLT---PPNVI--------WGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCC---CHHHH--------HHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 367899999999999999999986532 2110 00000 00133569999999999999999985
No 117
>PRK09275 aspartate aminotransferase; Provisional
Probab=45.31 E-value=64 Score=36.35 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHHHc--CCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMR--GINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~r--gI~VI 281 (552)
+..||++++++|++.|+++ ++-||
T Consensus 255 G~v~s~e~l~~I~~ia~~~~~~l~II 280 (527)
T PRK09275 255 SVAMSDESLEKIADIVNEKRPDLMII 280 (527)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 4579999999999999754 77665
No 118
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=45.15 E-value=75 Score=33.52 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++|+-||
T Consensus 178 G~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 178 GAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred CccCCHHHHHHHHHHHHHcCEEEE
Confidence 457999999999999999999776
No 119
>PRK10658 putative alpha-glucosidase; Provisional
Probab=44.77 E-value=1.3e+02 Score=35.04 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCccccceecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHH
Q 008821 194 PRFAFRGLLIDTSRHY-LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSF 272 (552)
Q Consensus 194 P~f~~RG~mlD~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~y 272 (552)
|++.+ |+.+-.+... ++-+.+.++++.|...++-.=.+|+.. .|-=+. .+..++ + ....+. |.+++++.
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~--~w~~~~-~~~~f~---w-d~~~FP--dp~~mi~~ 333 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDC--FWMKEF-QWCDFE---W-DPRTFP--DPEGMLKR 333 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEch--hhhcCC-ceeeeE---E-ChhhCC--CHHHHHHH
Confidence 67776 8877553322 567789999999999988855555532 221000 011111 0 011121 56789999
Q ss_pred HHHcCCEEEEeecCCC----ccc---hHhhhC----CC-------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHhh
Q 008821 273 AKMRGINVMAEVDVPG----HAE---SWGAGY----PN-------LWPSPSCREPLDVSKNFTFEVISGILSDLRKI 331 (552)
Q Consensus 273 A~~rgI~VIPEiD~PG----H~~---a~~~~y----p~-------l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~l 331 (552)
-+++||+|++-|+ |+ +.. +..+.| ++ .++ .....+|.+||++.+...+.++++.++
T Consensus 334 L~~~G~k~~~~i~-P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~--g~~~~~Dftnp~ar~W~~~~~~~l~d~ 407 (665)
T PRK10658 334 LKAKGLKICVWIN-PYIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQ--PGMAIVDFTNPDACKWYADKLKGLLDM 407 (665)
T ss_pred HHHCCCEEEEecc-CCcCCCchHHHHHHHCCeEEECCCCCEeeeeecC--CCceeecCCCHHHHHHHHHHHHHHHhc
Confidence 9999999998775 32 110 111111 10 011 112358999999999999999888664
No 120
>PRK05942 aspartate aminotransferase; Provisional
Probab=44.76 E-value=59 Score=34.62 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..+|.+++++|++.|+++++-||-
T Consensus 184 G~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 184 TATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 4579999999999999999998773
No 121
>PRK07324 transaminase; Validated
Probab=44.55 E-value=1.5e+02 Score=31.39 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+..++++++++|++.|+++|+-||-.
T Consensus 167 G~~~~~~~l~~i~~~a~~~~~~ii~D 192 (373)
T PRK07324 167 GALMDRAYLEEIVEIARSVDAYVLSD 192 (373)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999987754
No 122
>PRK08363 alanine aminotransferase; Validated
Probab=44.17 E-value=71 Score=34.01 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..++.+++++|++.|+++|+-||
T Consensus 180 G~~~~~~~~~~l~~~a~~~~~~li 203 (398)
T PRK08363 180 GALYEKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEE
Confidence 456899999999999999998766
No 123
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=43.32 E-value=1e+02 Score=30.27 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCC--CCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAY--SKWERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~--~~~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+.+.|+++.+.++.+... ++|+.--+ ++-..+|..|.. .| ......++++++++.+.++++|+.++
T Consensus 143 ~~e~i~~ia~~l~~l~~~--~~~llpyh--~~g~~Ky~~lg~-~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 143 SRENMQQALDVLIPLGIK--QIHLLPFH--QYGEPKYRLLGK-TWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CHHHHHHHHHHHHHcCCc--eEEEecCC--ccchhHHHHcCC-cCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 578899999999887554 56653221 111122222210 11 12234689999999999999999985
No 124
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=42.92 E-value=1.4e+02 Score=31.73 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||++++++|++.|+++++-||
T Consensus 179 G~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 179 GAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCEEEE
Confidence 457999999999999999998776
No 125
>PRK08960 hypothetical protein; Provisional
Probab=42.87 E-value=50 Score=35.01 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+..++.+++++|++.|+++|+-||-.
T Consensus 179 G~~~~~~~~~~l~~~~~~~~~~li~D 204 (387)
T PRK08960 179 GTLLSRDELAALSQALRARGGHLVVD 204 (387)
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 45799999999999999999977643
No 126
>PRK01060 endonuclease IV; Provisional
Probab=42.67 E-value=3.6e+02 Score=26.96 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=44.8
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 008821 200 GLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGIN 279 (552)
Q Consensus 200 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~ 279 (552)
|+|..+.+. +.+.|+.++..++..+.+-+.....|. ...+|.++++++-+.++++||+
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~----------------~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK----------------RKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc----------------CCCCCHHHHHHHHHHHHHcCCC
Confidence 555555444 788999999999999999664332221 2347999999999999999999
Q ss_pred E
Q 008821 280 V 280 (552)
Q Consensus 280 V 280 (552)
+
T Consensus 63 ~ 63 (281)
T PRK01060 63 P 63 (281)
T ss_pred C
Confidence 5
No 127
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=41.57 E-value=55 Score=33.10 Aligned_cols=78 Identities=14% Similarity=0.345 Sum_probs=52.1
Q ss_pred CCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCc--cccCCCCCCCCCHHHHHHHHH
Q 008821 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL--WKGAYSKWERYTVEDAHEIVS 271 (552)
Q Consensus 194 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l--~~Ga~~~~~~YT~~ei~elv~ 271 (552)
|++.+ |++.--- .+.+-+.++++++.+..+++..=++++.++ |-- .+-.. + + ....| .+.+++++
T Consensus 7 P~wa~-G~~~~~~-~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~--~~~---~~~~f~~~---~-d~~~F--pdp~~~i~ 73 (265)
T cd06589 7 PKWAF-GYWLSRY-GYGDQDKVLEVIDGMRENDIPLDGFVLDDD--YTD---GYGDFTFD---W-DAGKF--PNPKSMID 73 (265)
T ss_pred cHHHH-HHHHhcC-CCCCHHHHHHHHHHHHHcCCCccEEEECcc--ccc---CCceeeee---c-ChhhC--CCHHHHHH
Confidence 55554 6664322 257899999999999999999777777554 221 11111 1 0 01122 25789999
Q ss_pred HHHHcCCEEEEee
Q 008821 272 FAKMRGINVMAEV 284 (552)
Q Consensus 272 yA~~rgI~VIPEi 284 (552)
..+++|++|++-+
T Consensus 74 ~l~~~g~~~~~~~ 86 (265)
T cd06589 74 ELHDNGVKLVLWI 86 (265)
T ss_pred HHHHCCCEEEEEe
Confidence 9999999999977
No 128
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=41.24 E-value=99 Score=34.44 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..|+.+++++|++.|+++++-||
T Consensus 295 G~v~~~~~l~~i~~~a~~~~~~ii 318 (517)
T PRK13355 295 GALYPREVLQQIVDIAREHQLIIF 318 (517)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEE
Confidence 457999999999999999998766
No 129
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=40.72 E-value=64 Score=37.54 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeec--------CCccccccC--CCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 008821 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIID--------EQSFPLEVP--TYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (552)
Q Consensus 207 R~f~~~~~lk~~Id~ma~~KlN~lh~HltD--------dq~~rle~~--~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~r 276 (552)
|+=|+.+.-+.+++.++.+++. |+++|- .+|+-+-=+ --|+| =..+=+..|++-++++
T Consensus 13 ~~gFtF~~A~~~l~yl~~LGIS--hLY~SPIftA~pGStHGYDVvD~t~InPeL----------GG~egl~rLvaalk~~ 80 (889)
T COG3280 13 RGGFTFADARALLDYLADLGIS--HLYLSPIFTARPGSTHGYDVVDPTEINPEL----------GGEEGLERLVAALKSR 80 (889)
T ss_pred cCCCCHHHHHHhhHHHHhcCch--heeccchhhcCCCCCCCccCCCccccChhh----------cChHHHHHHHHHHHhc
Confidence 4567888889999999999988 665541 122211100 01222 1467799999999999
Q ss_pred CCEEEEeecCCCccchH
Q 008821 277 GINVMAEVDVPGHAESW 293 (552)
Q Consensus 277 gI~VIPEiD~PGH~~a~ 293 (552)
|.-+|-.| +|-||..-
T Consensus 81 GlGlI~DI-VPNHMav~ 96 (889)
T COG3280 81 GLGLIVDI-VPNHMAVG 96 (889)
T ss_pred CCceEEEe-cccchhcc
Confidence 99999999 99999754
No 130
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=39.86 E-value=2.1e+02 Score=26.17 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=50.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCC
Q 008821 255 YSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPF 334 (552)
Q Consensus 255 ~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~ 334 (552)
+|.-..+|.+||+.=|+|+-+.|=.+--|.+-++|... .|-.+|.-+ .++-+++. +++.+ ++|....+|.
T Consensus 8 fSyLPpLTdeqI~kQI~Y~i~~GW~p~iEft~~~~~~~---~YW~MWkLP----MFg~tD~~--~Vl~E-i~~CrkayP~ 77 (138)
T CHL00130 8 FSFLPDLTDQQIEKQIQYAISKGWALNVEWTDDPHPRN---SYWELWGLP----LFDVKDPA--AVMFE-INECRKQKPN 77 (138)
T ss_pred eccCCCCCHHHHHHHHHHHHhcCCeEEEEecCCCCcCc---cEEeeeCCc----cCCCCCHH--HHHHH-HHHHHHHCCC
Confidence 33344579999999999999999999999999999752 233333211 23333333 22222 3444668999
Q ss_pred CeeeeCC
Q 008821 335 ELFHLGG 341 (552)
Q Consensus 335 ~~iHiGg 341 (552)
.||-|=|
T Consensus 78 ~yIRl~g 84 (138)
T CHL00130 78 GYIKVNA 84 (138)
T ss_pred cEEEEEE
Confidence 8887644
No 131
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.55 E-value=46 Score=32.82 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccc--c-cCCCCCccccCCCCCCCCCHHHH-----------------HHH
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL--E-VPTYPNLWKGAYSKWERYTVEDA-----------------HEI 269 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rl--e-~~~~P~l~~Ga~~~~~~YT~~ei-----------------~el 269 (552)
.+.+...++++.+...++..+-+-++..++.+. + .+.||++..|+ +...|.+|+ .++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v 100 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGA---GTVLNPEQLAQAIEAGAQFIVSPGLTPPL 100 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEE---eeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 367888999999999999999999888876543 1 24688876554 223333333 378
Q ss_pred HHHHHHcCCEEEEeecCCCccch
Q 008821 270 VSFAKMRGINVMAEVDVPGHAES 292 (552)
Q Consensus 270 v~yA~~rgI~VIPEiD~PGH~~a 292 (552)
+++|++++|.++|.+-+|.-...
T Consensus 101 i~~a~~~~i~~iPG~~TptEi~~ 123 (212)
T PRK05718 101 LKAAQEGPIPLIPGVSTPSELML 123 (212)
T ss_pred HHHHHHcCCCEeCCCCCHHHHHH
Confidence 99999999999999999976543
No 132
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=39.49 E-value=39 Score=35.66 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCE-EEEeecCCCcc-chHhhhCCCCC-------CCCCCCCCCCCCChhHHHHHHHHHHHHHhhCC
Q 008821 267 HEIVSFAKMRGIN-VMAEVDVPGHA-ESWGAGYPNLW-------PSPSCREPLDVSKNFTFEVISGILSDLRKIFP 333 (552)
Q Consensus 267 ~elv~yA~~rgI~-VIPEiD~PGH~-~a~~~~yp~l~-------~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~ 333 (552)
|.|++.-++.||+ |.|- ..||. .++.+.+|+-. ..-.|..-|+|.+|---++-+..++|..++|.
T Consensus 98 ~kIl~RmreLGm~PVLPa--F~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~~yG 171 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPA--FAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIKLYG 171 (333)
T ss_dssp HHHHHHHHHHT-EEEEE----S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCcccCCC--cCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHHHHHHhcC
Confidence 6789999999998 6676 58999 45667888752 11124457999999988899999999999996
No 133
>PLN03059 beta-galactosidase; Provisional
Probab=39.25 E-value=2.9e+02 Score=32.97 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=57.5
Q ss_pred ceEEEcCCCCccccceecCCCCC--CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHH
Q 008821 187 PWYIQDKPRFAFRGLLIDTSRHY--LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVE 264 (552)
Q Consensus 187 ~~~I~D~P~f~~RG~mlD~aR~f--~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ 264 (552)
.+.|...|.+-+=|-| || .|.+..++.|..|...++|++.-++- |.+- |-..|.|.-. ...
T Consensus 36 ~f~idG~p~~i~sG~i-----HY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~----Wn~H-----Ep~~G~~dF~---G~~ 98 (840)
T PLN03059 36 AFIINGQRRILISGSI-----HYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGH-----EPSPGNYYFE---DRY 98 (840)
T ss_pred EEEECCEEEEEEEeCc-----ccCcCCHHHHHHHHHHHHHcCCCeEEEEec----cccc-----CCCCCeeecc---chH
Confidence 4556667776666655 55 56889999999999999999986652 3321 1123444333 267
Q ss_pred HHHHHHHHHHHcCCEEEEe
Q 008821 265 DAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 265 ei~elv~yA~~rgI~VIPE 283 (552)
|+..+++.|++.|+-||--
T Consensus 99 DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 99 DLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHHHHcCCEEEec
Confidence 9999999999999999864
No 134
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=38.83 E-value=45 Score=33.83 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeee
Q 008821 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHL 339 (552)
Q Consensus 260 ~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHi 339 (552)
.++.+++++|+++|.++|++++-|+...-+..-+++.-+.+- -+|-.|=.++++--+...++++..|...+-|
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iI-------GINnRdL~tf~vdl~~t~~la~~~p~~~~~I 211 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKII-------GINNRDLTTLEVDLETTEKLAPLIPKDVILI 211 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEE-------EEeCCCcchheecHHHHHHHHhhCCCCcEEE
Confidence 589999999999999999999999955544444444333321 1233334445555555777888888764444
Q ss_pred C
Q 008821 340 G 340 (552)
Q Consensus 340 G 340 (552)
.
T Consensus 212 s 212 (254)
T COG0134 212 S 212 (254)
T ss_pred e
Confidence 3
No 135
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=38.67 E-value=1.2e+02 Score=31.75 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||.+++++|++.|+++++-||-
T Consensus 155 G~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 155 GQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CCccCHHHHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999998773
No 136
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=38.64 E-value=1e+02 Score=34.68 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHc--CCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMR--GINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~r--gI~VI 281 (552)
+..||++++++|++.|+++ ++-||
T Consensus 254 G~vls~e~l~~I~~ia~~~~~~l~II 279 (521)
T TIGR03801 254 SVAMSDESIEKIVDIVANDRPDLMIL 279 (521)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEE
Confidence 4679999999999999986 77655
No 137
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.60 E-value=53 Score=32.15 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCcccc-c--cCCCCCccccCCCCCCCCCHHHH-----------------HHHH
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL-E--VPTYPNLWKGAYSKWERYTVEDA-----------------HEIV 270 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rl-e--~~~~P~l~~Ga~~~~~~YT~~ei-----------------~elv 270 (552)
+.+...++.+.|..-++..+-+-++..+.... + .+.||++..|+ +..+|.+|+ .+++
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGA---GTVl~~e~a~~ai~aGA~FivSP~~~~~vi 90 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGA---GTILNAKQFEDAAKAGSRFIVSPGTTQELL 90 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEee---EeCcCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 78899999999999999999999987665441 1 24688877664 345555555 4688
Q ss_pred HHHHHcCCEEEEeecCCCccch
Q 008821 271 SFAKMRGINVMAEVDVPGHAES 292 (552)
Q Consensus 271 ~yA~~rgI~VIPEiD~PGH~~a 292 (552)
++|+++||-++|-.=||.-...
T Consensus 91 ~~a~~~~i~~iPG~~TptEi~~ 112 (201)
T PRK06015 91 AAANDSDVPLLPGAATPSEVMA 112 (201)
T ss_pred HHHHHcCCCEeCCCCCHHHHHH
Confidence 9999999999999999876644
No 138
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=38.43 E-value=48 Score=33.48 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
++.+++.|+.++..+.+++.++-. +. .+.+.. ...-....+-+++++++|+++||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~-----~~---~~~~~~----~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY-----DV---YYEEHD----EETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc-----cc---ccCcCC----HHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 677999999999999999877531 11 001000 00012345789999999999999999994
No 139
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=38.39 E-value=24 Score=28.84 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCC
Q 008821 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNL 300 (552)
Q Consensus 260 ~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l 300 (552)
-+-..=+++.++||+++|..|+|. ..=+..+++.+|++
T Consensus 38 Gia~~L~~~~l~~a~~~~~kv~p~---C~y~~~~~~~hpey 75 (78)
T PF14542_consen 38 GIAKKLVEAALDYARENGLKVVPT---CSYVAKYFRRHPEY 75 (78)
T ss_dssp THHHHHHHHHHHHHHHTT-EEEET---SHHHHHHHHH-GGG
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEE---CHHHHHHHHhCccc
Confidence 467888999999999999999994 33344566677764
No 140
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.26 E-value=50 Score=32.40 Aligned_cols=120 Identities=21% Similarity=0.189 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccc---cccCCCCCccccCCCCCCCCCHHHH-----------------HHHH
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFP---LEVPTYPNLWKGAYSKWERYTVEDA-----------------HEIV 270 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~r---le~~~~P~l~~Ga~~~~~~YT~~ei-----------------~elv 270 (552)
+.+...++.+.+..-++..+-+-++...... --.+.||++..|+ +..+|.+|+ .+++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v~ 94 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGA---GTVLNPEQLRQAVDAGAQFIVSPGLTPELA 94 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEE---EeCCCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 7889999999999999999999887765432 1225688876554 233444443 4788
Q ss_pred HHHHHcCCEEEEeecCCCccchHhh-hCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCC-CeeeeCCCCc
Q 008821 271 SFAKMRGINVMAEVDVPGHAESWGA-GYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPF-ELFHLGGDEV 344 (552)
Q Consensus 271 ~yA~~rgI~VIPEiD~PGH~~a~~~-~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~-~~iHiGgDEv 344 (552)
++|+++||-++|-+=+|........ +..-+ -+-|.+.-. =-+.++.+...||. +++=.||=..
T Consensus 95 ~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~v--------KlFPA~~~G---G~~yikal~~plp~i~~~ptGGV~~ 159 (204)
T TIGR01182 95 KHAQDHGIPIIPGVATPSEIMLALELGITAL--------KLFPAEVSG---GVKMLKALAGPFPQVRFCPTGGINL 159 (204)
T ss_pred HHHHHcCCcEECCCCCHHHHHHHHHCCCCEE--------EECCchhcC---CHHHHHHHhccCCCCcEEecCCCCH
Confidence 9999999999999999988765433 22111 011111110 01335556667775 7777777443
No 141
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=37.87 E-value=56 Score=34.95 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+..++.+++++|++.|+++|+-||-.
T Consensus 183 G~~~~~~~~~~i~~~a~~~~~~ii~D 208 (403)
T TIGR01265 183 GSVFSRDHLQKIAEVARKLGIPIIAD 208 (403)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999987744
No 142
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=37.62 E-value=2.4e+02 Score=29.63 Aligned_cols=111 Identities=11% Similarity=0.052 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 008821 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (552)
Q Consensus 208 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~P 287 (552)
.+.+-+++.++++.+...++..=.+++-.+ |- ..+-.++ + ....|. |.+.+++.-+++|++|++-++ |
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~---~-d~~~FP--dp~~mi~~L~~~G~k~~~~~~-P 86 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HT---DGKRYFT---W-DKKKFP--DPEKMQEKLASKGRKLVTIVD-P 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChH--Hh---CCCCceE---e-CcccCC--CHHHHHHHHHHCCCEEEEEec-C
Confidence 466899999999999999998666666322 10 1111111 0 112232 678899999999999999886 4
Q ss_pred Cccch-HhhhCCCC------C--CC---------CCCCCCCCCCChhHHHHHHHHHHHHHh
Q 008821 288 GHAES-WGAGYPNL------W--PS---------PSCREPLDVSKNFTFEVISGILSDLRK 330 (552)
Q Consensus 288 GH~~a-~~~~yp~l------~--~~---------~~~~~~l~~~~~~t~~fl~~vl~E~~~ 330 (552)
+-... -...|.+. . .+ +.....+|.+||++.+...+.++++..
T Consensus 87 ~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 87 HIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred ceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhh
Confidence 32210 00001110 0 00 011236899999999999999998864
No 143
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=36.99 E-value=2.4e+02 Score=30.84 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=39.4
Q ss_pred cCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 204 DTSRHY-LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 204 D~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
|...+| ..++.+++.++....-+.++=-+.++ .|..| -+..|+++++++|++.|++++|-||-
T Consensus 175 ~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~--------nP~NP--------tG~~~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 175 DSSNNFQVTPQALEAAYQEAEAANIRVRGVLIT--------NPSNP--------LGATVQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEe--------CCCCC--------cCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 333445 45777777776544434443112222 12223 24579999999999999999999873
No 144
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=36.98 E-value=1.1e+02 Score=26.98 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=61.7
Q ss_pred EEEEEcCchhhhHHHHHHHHhhccCCCCceeEeeccceEEEcCCCCcccc---ceecCCCCCCCHHHHHHHHHHHHhCCC
Q 008821 151 ATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRG---LLIDTSRHYLPVDVIKQIIESMSYAKL 227 (552)
Q Consensus 151 i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~i~~~~~~I~D~P~f~~RG---~mlD~aR~f~~~~~lk~~Id~ma~~Kl 227 (552)
|-|-|.+..---+|-+.+.+|...+. .-+.+....-+|...|.|+-=. --+|++=-+.|.+.+-.+++.+...+.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~--~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~ 80 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGY--EVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGV 80 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCC--EEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCC
Confidence 56666665555568777888777331 1111211112566666665333 467888888999999999999999999
Q ss_pred cEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 228 NVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 228 N~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
..+.++.. ++-++++++|++.||+|+
T Consensus 81 ~~v~~~~g----------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 81 KAVWLQPG----------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp SEEEE-TT----------------------------S--HHHHHHHHHTT-EEE
T ss_pred CEEEEEcc----------------------------hHHHHHHHHHHHcCCEEE
Confidence 98888642 355789999999999998
No 145
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=36.97 E-value=4.3e+02 Score=26.24 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 215 IKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 215 lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+.+.|+.++.++++.+++.+..-+.|. ...+|.++++++-+.++++||+|.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~gl~ls 62 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWK----------------GVRLSEETAEKFKEALKENNIDVS 62 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCC----------------CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 557899999999999999875433221 225789999999999999999875
No 146
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=36.60 E-value=68 Score=31.80 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=52.7
Q ss_pred CCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHH
Q 008821 195 RFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAK 274 (552)
Q Consensus 195 ~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~ 274 (552)
-|+.=|+++|+...- +.+-+-++++....+.-+.+-.-.. -..++|++|+.+|.+|++
T Consensus 131 L~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifvN---------------------l~~YLt~eei~el~~~i~ 188 (216)
T TIGR01866 131 IIKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFIN---------------------SGAFLTKDELAELQKFIS 188 (216)
T ss_pred HHHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEEc---------------------HHHhCCHHHHHHHHHHHH
Confidence 356789999999886 8888888888888877765554321 246799999999999999
Q ss_pred HcCCEEEE
Q 008821 275 MRGINVMA 282 (552)
Q Consensus 275 ~rgI~VIP 282 (552)
...+.|+-
T Consensus 189 ~~~~~vll 196 (216)
T TIGR01866 189 YTKLTVLF 196 (216)
T ss_pred HhcccEEE
Confidence 99999764
No 147
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=36.52 E-value=2.4e+02 Score=33.03 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecCCCccchH-----hhhCCCCC--------C------CCCCCCCCCCCChhHHHHHHH
Q 008821 263 VEDAHEIVSFAKMRGINVMAEVDVPGHAESW-----GAGYPNLW--------P------SPSCREPLDVSKNFTFEVISG 323 (552)
Q Consensus 263 ~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~-----~~~yp~l~--------~------~~~~~~~l~~~~~~t~~fl~~ 323 (552)
..|+|++|+-..++||+||-.+ +.-|+..- ......+. + ...|.+.|+..+|-+.+++-+
T Consensus 264 i~EfK~mV~~lHkaGI~VILDV-VfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 264 IKEFKDMVKALHKAGIEVILDV-VFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHHHHcCCEEEEEE-eccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHH
Confidence 4599999999999999999999 88898521 11111111 1 234677899999999999888
Q ss_pred HHHHHHhhC
Q 008821 324 ILSDLRKIF 332 (552)
Q Consensus 324 vl~E~~~lF 332 (552)
-|+=..+-+
T Consensus 343 sLrYWv~e~ 351 (697)
T COG1523 343 SLRYWVEEY 351 (697)
T ss_pred HHHHHHHHh
Confidence 777665543
No 148
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=36.51 E-value=43 Score=33.86 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCee
Q 008821 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELF 337 (552)
Q Consensus 260 ~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~i 337 (552)
.++.+++++++++|...|++++-|+-...-....+..-+++- .+|-.|-.|+++--+...++.+.+|...+
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~ii-------GINnRdL~t~~vd~~~~~~L~~~ip~~~~ 204 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEII-------GINTRDLDTFQIHQNLVEEVAAFLPPNIV 204 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEE-------EEeCCCCccceECHHHHHHHHhhCCCCcE
Confidence 478999999999999999999999955444443444334331 12233334444444455667777775433
No 149
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=35.90 E-value=1.8e+02 Score=29.88 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=23.8
Q ss_pred cccccCCCCCccccCCCCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 240 FPLEVPTYPNLWKGAYSKW-ERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 240 ~rle~~~~P~l~~Ga~~~~-~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
||+-++-+|-.+...+... ...=++++++|=++|+++||++--
T Consensus 62 yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls~ 105 (275)
T PF03851_consen 62 YRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLSM 105 (275)
T ss_dssp EE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred EecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEEe
Confidence 5666665665431000000 013367899999999999999964
No 150
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=35.64 E-value=2.4e+02 Score=30.73 Aligned_cols=61 Identities=7% Similarity=0.004 Sum_probs=47.4
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 008821 200 GLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGIN 279 (552)
Q Consensus 200 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~ 279 (552)
|.|+-++.. +.+.+.....++.|+|++-+..-++|+- ..++.++++++.+.++++||.
T Consensus 134 GaHvSiaGG------~~~a~~~a~~~g~~afqiF~~npr~w~~----------------~~~~~~~~~~f~~~~~~~gi~ 191 (413)
T PTZ00372 134 GAHVSASGG------VDNSPINAYNIAGQAFALFLKNQRTWNS----------------PPLSDETIDKFKENCKKYNYD 191 (413)
T ss_pred EEEEecccc------HHHHHHHHHHcCCCEEEEEcCCCccCCC----------------CCCCHHHHHHHHHHHHHcCCC
Confidence 455555432 4567888889999999999888888852 236899999999999999998
Q ss_pred EEE
Q 008821 280 VMA 282 (552)
Q Consensus 280 VIP 282 (552)
+.|
T Consensus 192 ~~~ 194 (413)
T PTZ00372 192 PKF 194 (413)
T ss_pred cce
Confidence 544
No 151
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=35.34 E-value=57 Score=35.53 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=51.2
Q ss_pred ccceecCCCCC---CCH---HHHHHHHHHHHh-CCC-cEEEEEeecCCcc-ccccCCCCCccccCCCCCCCCCHHHHHHH
Q 008821 199 RGLLIDTSRHY---LPV---DVIKQIIESMSY-AKL-NVLHWHIIDEQSF-PLEVPTYPNLWKGAYSKWERYTVEDAHEI 269 (552)
Q Consensus 199 RG~mlD~aR~f---~~~---~~lk~~Id~ma~-~Kl-N~lh~HltDdq~~-rle~~~~P~l~~Ga~~~~~~YT~~ei~el 269 (552)
=|+.||++.-| +.+ +.+.++++.+.. .++ ..-|+|+.|+.+= .=..+.|-.+ +.|..-.+-++.|
T Consensus 303 lGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~~DRH~~I------G~G~Ig~~~f~~l 376 (413)
T PTZ00372 303 VGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSGLDRHENI------GKGKLGMETFKFI 376 (413)
T ss_pred eEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCCcccccCc------CCCCcChHHHHHH
Confidence 38999999765 433 355556555532 233 3567888887431 1011223223 2466788999999
Q ss_pred HHHHHHcCCEEEEee
Q 008821 270 VSFAKMRGINVMAEV 284 (552)
Q Consensus 270 v~yA~~rgI~VIPEi 284 (552)
+...+-.+|-+|-|.
T Consensus 377 ~~~~~~~~iP~ILET 391 (413)
T PTZ00372 377 MNSKYFKNIPIILET 391 (413)
T ss_pred HhChhhCCCeEEEeC
Confidence 999999999999984
No 152
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=35.23 E-value=39 Score=36.17 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE-ee
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA-EV 284 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP-Ei 284 (552)
+..+|++|++.|.+.|+++||+||- ||
T Consensus 172 Grvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 172 GRVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred CccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 5689999999999999999999986 44
No 153
>PLN00175 aminotransferase family protein; Provisional
Probab=35.15 E-value=1.3e+02 Score=32.35 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||.+++++|++.|+++++-||-
T Consensus 201 G~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 201 GKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred CcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 4579999999999999999997763
No 154
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=34.45 E-value=46 Score=29.67 Aligned_cols=28 Identities=36% Similarity=0.525 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeecCCCccc
Q 008821 262 TVEDAHEIVSFAKMRGINVMAEVDVPGHAE 291 (552)
Q Consensus 262 T~~ei~elv~yA~~rgI~VIPEiD~PGH~~ 291 (552)
|.+|+++++++|+++++.|.|- .-||..
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~--g~G~~~ 36 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR--GGGHSW 36 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE--SSSTTS
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--cCCCCc
Confidence 7899999999999999999986 456643
No 155
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=33.14 E-value=1.4e+02 Score=32.60 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCc---cccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCC
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQS---FPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq~---~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PG 288 (552)
+.-|.+-+|.+..++++.+++=..-..- -.+.+..|-++ ...+=|.+|++++++-|.+|||.||..+ +.-
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~i------d~~~Gt~~d~~~li~~~H~~gi~vi~D~-V~N 100 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKV------DPHFGTEEDFKELVEEAHKRGIKVILDL-VFN 100 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhc------CcccCCHHHHHHHHHHHHHCCCEEEEEe-ccC
Confidence 4555688999999999999884321100 00001111111 1233489999999999999999999998 466
Q ss_pred ccc
Q 008821 289 HAE 291 (552)
Q Consensus 289 H~~ 291 (552)
|+.
T Consensus 101 H~s 103 (505)
T COG0366 101 HTS 103 (505)
T ss_pred cCC
Confidence 765
No 156
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=32.10 E-value=62 Score=34.44 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++++-||
T Consensus 180 G~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 180 GAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEE
Confidence 457999999999999999999876
No 157
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=31.32 E-value=4.2e+02 Score=27.79 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=69.9
Q ss_pred eEEEcCCCCccccc-eecC-----CCCC-------------CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCC
Q 008821 188 WYIQDKPRFAFRGL-LIDT-----SRHY-------------LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYP 248 (552)
Q Consensus 188 ~~I~D~P~f~~RG~-mlD~-----aR~f-------------~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P 248 (552)
+.+.+.|+.+.|-+ +-|- =|.| .-.+.++++-+.+|..++|-..+-=....+..
T Consensus 13 ~~~~~~P~~~~R~lNhWDN~dgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~~~------- 85 (328)
T PF07488_consen 13 LDIVENPKAPLRMLNHWDNLDGSIERGYAGKSIFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANPKL------- 85 (328)
T ss_dssp -EEEE--SSSEEEEE--B-TTS-BTT--SSS-SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--CGG-------
T ss_pred CccccCCCcceeecccccCCCCceecccCcccccccCCCcccchhHHHHHHHHHhhcCCceEEecccccChhh-------
Confidence 46788888887755 2232 1221 12466888999999999998887433332211
Q ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 008821 249 NLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDL 328 (552)
Q Consensus 249 ~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~ 328 (552)
|+. . -.++++.|..-.+.+||+|--.++.-+-.. ... -...||.+|++.+.-++..+|+
T Consensus 86 -Lt~-------~-~l~~v~~lAdvfRpYGIkv~LSvnFasP~~-----lgg-------L~TaDPld~~V~~WW~~k~~eI 144 (328)
T PF07488_consen 86 -LTP-------E-YLDKVARLADVFRPYGIKVYLSVNFASPIE-----LGG-------LPTADPLDPEVRQWWKDKADEI 144 (328)
T ss_dssp -GST-------T-THHHHHHHHHHHHHTT-EEEEEE-TTHHHH-----TTS--------S---TTSHHHHHHHHHHHHHH
T ss_pred -cCH-------H-HHHHHHHHHHHHhhcCCEEEEEeeccCCcc-----cCC-------cCcCCCCCHHHHHHHHHHHHHH
Confidence 110 0 256889999999999999999887654322 111 2357899999999999999999
Q ss_pred HhhCCC
Q 008821 329 RKIFPF 334 (552)
Q Consensus 329 ~~lF~~ 334 (552)
-+.+|+
T Consensus 145 Y~~IPD 150 (328)
T PF07488_consen 145 YSAIPD 150 (328)
T ss_dssp HHH-TT
T ss_pred HHhCCC
Confidence 999886
No 158
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=30.97 E-value=3.4e+02 Score=25.57 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEeecC
Q 008821 209 YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERY--TVEDAHEIVSFAKMRGINVMAEVDV 286 (552)
Q Consensus 209 f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~Y--T~~ei~elv~yA~~rgI~VIPEiD~ 286 (552)
=++.+...+.++.|...++|+|-+--+-..++.. ||. .+ + +.+++ ..+=+..+++.|.+.|+.|+.-+..
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~----yps--~~-~-~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAF----YPS--KL-S-PGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCccc----CCc--cc-c-CccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 4678889999999999999998877655544432 221 01 0 11111 3456899999999999999987643
Q ss_pred CCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCC
Q 008821 287 PGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPF 334 (552)
Q Consensus 287 PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~ 334 (552)
-++ .+. .-|+.. -.++-+.|.+|+.+.+..
T Consensus 88 ~~~----------~w~------~~~~~~--~~~~~~~v~~el~~~yg~ 117 (166)
T PF14488_consen 88 DPD----------YWD------QGDLDW--EAERNKQVADELWQRYGH 117 (166)
T ss_pred Cch----------hhh------ccCHHH--HHHHHHHHHHHHHHHHcC
Confidence 221 111 011111 334556688888887754
No 159
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=30.57 E-value=72 Score=35.15 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..||.+++++|++.|+++++-||-
T Consensus 205 G~~~s~e~l~~ll~~a~~~~~~iI~ 229 (468)
T PLN02450 205 GTTTTRTELNLLVDFITAKNIHLIS 229 (468)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEE
Confidence 4579999999999999999998773
No 160
>PRK09148 aminotransferase; Validated
Probab=30.57 E-value=77 Score=33.97 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++|+-||
T Consensus 179 G~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 179 AYVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEE
Confidence 467999999999999999998766
No 161
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=30.56 E-value=1.9e+02 Score=30.81 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHH-HHHHHHHHHHhhCCCCeeeeCCCCcC
Q 008821 267 HEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFE-VISGILSDLRKIFPFELFHLGGDEVN 345 (552)
Q Consensus 267 ~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~-fl~~vl~E~~~lF~~~~iHiGgDEv~ 345 (552)
.+++.+|+++||+|++-.+.|.. ...+++..+ |++++++.+.+. |-|=+.
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~---------------------~l~~~~~R~~fi~siv~~~~~~--------gfDGId 117 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLE---------------------QISNPTYRTQWIQQKVELAKSQ--------FMDGIN 117 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHH---------------------HcCCHHHHHHHHHHHHHHHHHh--------CCCeEE
Confidence 48899999999999986433311 124555554 889999877653 222221
Q ss_pred CcCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008821 346 TDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKN 385 (552)
Q Consensus 346 ~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G 385 (552)
. .|+. |.. .+-...+.|..|++++.+.+++.|
T Consensus 118 I-DwE~-p~~------~~~~d~~~~t~llkelr~~l~~~~ 149 (358)
T cd02875 118 I-DIEQ-PIT------KGSPEYYALTELVKETTKAFKKEN 149 (358)
T ss_pred E-cccC-CCC------CCcchHHHHHHHHHHHHHHHhhcC
Confidence 1 1321 100 011123667889999988887764
No 162
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=30.54 E-value=2.2e+02 Score=30.69 Aligned_cols=152 Identities=12% Similarity=0.062 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCC
Q 008821 263 VEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGD 342 (552)
Q Consensus 263 ~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgD 342 (552)
..-.+.+++-+.+.|++.++-.++-+++ .|+- .....++ ++-.+++++++...- .+++|..
T Consensus 128 ~~~~~~~~~a~~~~g~r~~~~~~~~~~~------~p~~---------~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~ 188 (421)
T COG0402 128 AESADAAFEAALEVGLRAVLGPVLQDVA------FPDP---------GAETDEE-LEETEELLREAHGLG---RDVVGLA 188 (421)
T ss_pred hhhHHHHHHHHHHhCCeeEeeeccccCC------CCcc---------cccchHH-HHHHHHHHHHHhcCC---CeeEEEe
Confidence 3445678889999999999888887765 2211 1111222 333334444433222 3333333
Q ss_pred CcCCcCCCCCH----HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCeeeEecccccccCCCC-CCCeEEEEeC-CCCc
Q 008821 343 EVNTDCWSSTP----HVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNL-NPRTVVHNWL-GGGV 416 (552)
Q Consensus 343 Ev~~~~w~~~p----~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~~l-~~~~iv~~W~-~~~~ 416 (552)
-... +..++ .+.+..++.|.-..--...-...+....+..|++++.|.+... .+ ++.+.++.++ ....
T Consensus 189 p~~~--~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g----~l~~~~~~~H~~~~~~~e 262 (421)
T COG0402 189 PHFP--YTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLG----LLGSHTLLAHCVHLSEEE 262 (421)
T ss_pred cCCC--CCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcC----CCCCCeEEEEeccCCHHH
Confidence 2210 11122 2222223223210000000011122233357888888876542 23 3445555544 4445
Q ss_pred hHHHHHcCCcEEEeCCCceeccC
Q 008821 417 CPKAVAKGFRCIYSNQGFWYLDH 439 (552)
Q Consensus 417 ~~~~~~~G~~vI~s~~~~~Yld~ 439 (552)
...+++.|-.++.||-.+++|.-
T Consensus 263 ~~~l~~~g~~v~~cP~sN~~L~s 285 (421)
T COG0402 263 LELLAESGASVVHCPRSNLKLGS 285 (421)
T ss_pred HHHHhhCCCeEEECcchhccccC
Confidence 66677899999999988888853
No 163
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=30.39 E-value=1.5e+02 Score=31.46 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCC
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PG 288 (552)
.+.+.-+.+||.|+.+++..+---| ..|+-+ ...-.+-+++|+++|++.|++||-.| .|+
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl-----------~~~~~~-------~~~~~~~~~ell~~Anklg~~vivDv-nPs 72 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSL-----------LIPEED-------AELYFHRFKELLKEANKLGLRVIVDV-NPS 72 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeec-----------ccCCch-------HHHHHHHHHHHHHHHHhcCcEEEEEc-CHH
Confidence 3567889999999999988654432 112211 11124568999999999999999888 344
No 164
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=29.92 E-value=2.1e+02 Score=30.02 Aligned_cols=122 Identities=18% Similarity=0.355 Sum_probs=71.3
Q ss_pred CCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHH
Q 008821 194 PRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFA 273 (552)
Q Consensus 194 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA 273 (552)
|++.+ |++.- -..+.+-+.++++++.+...++-.=.+++.++ |- ..+..++ + ....|. |.+++++..
T Consensus 7 P~wal-G~~~s-~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~---~-d~~~fP--dp~~m~~~l 73 (339)
T cd06604 7 PKWAL-GYQQS-RWSYYPEEEVREIADEFRERDIPCDAIYLDID--YM---DGYRVFT---W-DKERFP--DPKELIKEL 73 (339)
T ss_pred chHHH-hHHhc-CCCCCCHHHHHHHHHHHHHhCCCcceEEECch--hh---CCCCcee---e-ccccCC--CHHHHHHHH
Confidence 44443 55421 12456789999999999999888655555322 21 1222222 0 112333 568999999
Q ss_pred HHcCCEEEEeecC-----CCccc---hHhhhC----CC-------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHh
Q 008821 274 KMRGINVMAEVDV-----PGHAE---SWGAGY----PN-------LWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (552)
Q Consensus 274 ~~rgI~VIPEiD~-----PGH~~---a~~~~y----p~-------l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~ 330 (552)
+++|+++++-++- ++... +..+.| ++ .++ .....+|.+||++.++..+.++++.+
T Consensus 74 ~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~--g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 74 HEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWP--GLSAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred HHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecC--CCccccCCCChHHHHHHHHHHHHHhh
Confidence 9999999877642 12110 000010 00 001 11234799999999999999988764
No 165
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=29.59 E-value=3e+02 Score=30.22 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeecCCC
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPEiD~PG 288 (552)
+..+|.+.-++|++.|+++++-|| |=|.-|
T Consensus 241 G~tms~~rR~~Ll~lA~~~~~~II-EDD~y~ 270 (459)
T COG1167 241 GVTMSLERRKALLALAEKYDVLII-EDDYYG 270 (459)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEE-eeCcch
Confidence 567999999999999999999887 434444
No 166
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=29.45 E-value=59 Score=33.91 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..|+.+++++|++.|+++|+-||-
T Consensus 150 G~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 150 GATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred CcccCHHHHHHHHHHHHHcCcEEEE
Confidence 4579999999999999999997663
No 167
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=29.36 E-value=1.2e+02 Score=30.63 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 260 RYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 260 ~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
..+.++..++|+.|+++|..|+||+
T Consensus 109 ~l~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 109 DLPEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp ---HHHHHHHHHHHCCTTSEEEEEE
T ss_pred eCCHHHHHHHHHHHHHCCCEEeecc
Confidence 3688999999999999999999999
No 168
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=29.06 E-value=8e+02 Score=29.25 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCC
Q 008821 262 TVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGG 341 (552)
Q Consensus 262 T~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGg 341 (552)
|.+|++++++.++.+|+. + +..++ .-..-+..|++..-++++... -.+|.||.
T Consensus 647 s~eEa~~~~~~~~~~g~~---------~------~~~~~------~vg~MIEtp~av~~~deIa~~------vDfi~IGt 699 (795)
T PRK06464 647 TVEEAEKVIELLAENGLK---------R------GENGL------KVIMMCEIPSNALLAEEFLEY------FDGFSIGS 699 (795)
T ss_pred CHHHHHHHHHHHHHhCcc---------c------cccCc------EEEEEEcCHHHHHHHHHHHHh------CCEEEECc
Confidence 899999999999977632 0 00010 001123467777777776665 34556665
Q ss_pred CCcCC---cCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCeeeEecccccccCCCCCCCeEEEEeCCCCchH
Q 008821 342 DEVNT---DCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWTPVNWEETFNSFASNLNPRTVVHNWLGGGVCP 418 (552)
Q Consensus 342 DEv~~---~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~~~~W~d~~~~~~~~l~~~~iv~~W~~~~~~~ 418 (552)
-.-.- +.-..++.+ ...+-........-+.++.+.++++|+..-+=.++..+ +.....
T Consensus 700 nDLtq~~lg~dR~n~~v----~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~---------------~p~~~~ 760 (795)
T PRK06464 700 NDLTQLTLGLDRDSGLV----AHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSD---------------HPDFAE 760 (795)
T ss_pred hHHHHHHhCcCCCchhh----hhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCC---------------cHHHHH
Confidence 43321 000011111 11111111334456677788888888866554333210 023445
Q ss_pred HHHHcCCcEEEeCC
Q 008821 419 KAVAKGFRCIYSNQ 432 (552)
Q Consensus 419 ~~~~~G~~vI~s~~ 432 (552)
.++..|++.+....
T Consensus 761 ~l~~~G~~~ls~~~ 774 (795)
T PRK06464 761 WLVEEGIDSISLNP 774 (795)
T ss_pred HHHHCCCCEEEEcc
Confidence 67788888776654
No 169
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.04 E-value=91 Score=31.02 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccc-c-----cc-CCCCCccccCCCCCCCCCHHHH-----------------
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFP-L-----EV-PTYPNLWKGAYSKWERYTVEDA----------------- 266 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~r-l-----e~-~~~P~l~~Ga~~~~~~YT~~ei----------------- 266 (552)
+.+...++.+.+..-++..+-+-++..++.. + +. .+||++..|+ +..+|.+|+
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGa---GTVl~~e~a~~a~~aGA~FiVsP~~~ 101 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGV---GSIVDAATAALYIQLGANFIVTPLFN 101 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEee---EeCcCHHHHHHHHHcCCCEEECCCCC
Confidence 6788899999999999999999987765443 1 11 4688887664 345566665
Q ss_pred HHHHHHHHHcCCEEEEeecCCCccchH
Q 008821 267 HEIVSFAKMRGINVMAEVDVPGHAESW 293 (552)
Q Consensus 267 ~elv~yA~~rgI~VIPEiD~PGH~~a~ 293 (552)
.+++++|+++||-+||-+=+|.-....
T Consensus 102 ~~v~~~~~~~~i~~iPG~~TpsEi~~A 128 (222)
T PRK07114 102 PDIAKVCNRRKVPYSPGCGSLSEIGYA 128 (222)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHH
Confidence 478899999999999999999876543
No 170
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=1.3e+02 Score=31.44 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecCCcc-cccc-CCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCcc
Q 008821 213 DVIKQIIESMSYAKLNVLHWHIIDEQSF-PLEV-PTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHA 290 (552)
Q Consensus 213 ~~lk~~Id~ma~~KlN~lh~HltDdq~~-rle~-~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~ 290 (552)
..+-..+...+..|||.|...+.||-|= ++.+ +.+|.-+ ++ .=.-.||+-+++-|++.||-+|--|=+.--+
T Consensus 77 k~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~-~s-----v~~f~Di~~~iKkaKe~giY~IARiVvFKD~ 150 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYT-KS-----VNKFKDIEPVIKKAKENGIYAIARIVVFKDT 150 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhh-hc-----cccccccHHHHHHHHhcCeEEEEEEEEeeee
Confidence 3455677888999999999999999662 1111 1111111 11 1124589999999999999999887554332
Q ss_pred chH----------hhhCCC-------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCcCCCC--
Q 008821 291 ESW----------GAGYPN-------LWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSS-- 351 (552)
Q Consensus 291 ~a~----------~~~yp~-------l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~-- 351 (552)
--+ ..+.|. |........=.|+=++.+.+.=-.|-+|.++ .|-||+... +-.
T Consensus 151 ~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~--------fGfdEiQFD-YIRFP 221 (400)
T COG1306 151 ILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAK--------FGFDEIQFD-YIRFP 221 (400)
T ss_pred eEEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHH--------cCccceeee-EEEcc
Confidence 110 001111 0000011112678889999888888888765 455665321 000
Q ss_pred --CH---HHHHHHHHcCCChHHHHHHHHHHHHH
Q 008821 352 --TP---HVKKWLRDHKLTAKEAYQYFVLTAQK 379 (552)
Q Consensus 352 --~p---~~~~~~~~~g~~~~~l~~~f~~~~~~ 379 (552)
.+ ....++++-|++..++...|+--..+
T Consensus 222 ~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE 254 (400)
T COG1306 222 ADGGGLDKALNYRNTDNMTKSEALQSFLHYARE 254 (400)
T ss_pred CCCCchhhhhcccccccCChHHHHHHHHHHHHH
Confidence 11 22334566788877777777654433
No 171
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.60 E-value=4.8e+02 Score=27.47 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=72.3
Q ss_pred CCCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCcccc-----ccCCCCCcccc--CCC-CCCCCCH-
Q 008821 193 KPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL-----EVPTYPNLWKG--AYS-KWERYTV- 263 (552)
Q Consensus 193 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rl-----e~~~~P~l~~G--a~~-~~~~YT~- 263 (552)
-|++.+ |++.--- .|.+-+.++++++.+..+++..=-+||.|=++.+- .+ .|-.. .| .+. ....|-.
T Consensus 6 pP~wal-G~~~sr~-~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~-~y~~~-~~~~~~~~~~~~f~~~ 81 (340)
T cd06597 6 LPKWAF-GLWMSAN-EWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDA-QYTPK-DGGAPLSYDDFSFPVE 81 (340)
T ss_pred CchHHh-hhhhhcc-CCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccc-hhccc-ccCCcceecccccCcc
Confidence 355555 5554221 46789999999999999999855555532111100 00 01000 00 000 0001111
Q ss_pred ---HHHHHHHHHHHHcCCEEE----EeecCCCcc--c-------hHhhhC----C--------CCCCCCCCCCCCCCCCh
Q 008821 264 ---EDAHEIVSFAKMRGINVM----AEVDVPGHA--E-------SWGAGY----P--------NLWPSPSCREPLDVSKN 315 (552)
Q Consensus 264 ---~ei~elv~yA~~rgI~VI----PEiD~PGH~--~-------a~~~~y----p--------~l~~~~~~~~~l~~~~~ 315 (552)
-|.+++|+..+++|++|+ |-|+.=-|. . +..+.| . ..++ .....+|.+||
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~--g~~~~~Dftnp 159 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWF--PDSLMLDFTNP 159 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccC--CCceeecCCCH
Confidence 268999999999999995 777531111 1 111111 0 0011 11235899999
Q ss_pred hHHHHHHHHHHHHHh
Q 008821 316 FTFEVISGILSDLRK 330 (552)
Q Consensus 316 ~t~~fl~~vl~E~~~ 330 (552)
++.+.-.+.++++.+
T Consensus 160 ~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 160 EAAQWWMEKRRYLVD 174 (340)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888763
No 172
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=28.55 E-value=5.4e+02 Score=27.08 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=68.1
Q ss_pred cceecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 008821 200 GLLIDTSRH-YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGI 278 (552)
Q Consensus 200 G~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI 278 (552)
|++. +|- |.+-+.++++++.+...++-.=.+++..+ |- +.+-.++- ....| -|.+++++.-++.|+
T Consensus 12 G~~q--sr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDid--y~---~~~~~Ft~----d~~~F--Pdp~~mv~~L~~~G~ 78 (332)
T cd06601 12 GFHQ--GCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVD--FQ---DNYRTFTT----NGGGF--PNPKEMFDNLHNKGL 78 (332)
T ss_pred hhhh--CCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCc--hh---cCCCceee----cCCCC--CCHHHHHHHHHHCCC
Confidence 6665 454 56899999999999999887555555333 21 12222220 01122 246788889999999
Q ss_pred EEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHh
Q 008821 279 NVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRK 330 (552)
Q Consensus 279 ~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~ 330 (552)
.+|+-++ |+=. +-..++. ...-.|.++|++.+.-.+.++.+.+
T Consensus 79 klv~~i~-P~i~------~g~~~~~--~~~~pDftnp~ar~wW~~~~~~l~~ 121 (332)
T cd06601 79 KCSTNIT-PVIS------YGGGLGS--PGLYPDLGRPDVREWWGNQYKYLFD 121 (332)
T ss_pred eEEEEec-Ccee------cCccCCC--CceeeCCCCHHHHHHHHHHHHHHHh
Confidence 9998886 3211 1111111 1224688999999988888777654
No 173
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=28.30 E-value=80 Score=32.02 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCC
Q 008821 218 IIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVP 287 (552)
Q Consensus 218 ~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~P 287 (552)
.|+....++-..+|+-.++ ++.+++++++++|+.+|.+++-|+...
T Consensus 125 qi~~a~~~GAD~VlLi~~~------------------------l~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA------------------------LDDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHHcCCCEEEEEecc------------------------CCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5888888888888885421 356799999999999999999998544
No 174
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=28.20 E-value=1.2e+02 Score=31.05 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeec
Q 008821 207 RHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGI-NVMAEVD 285 (552)
Q Consensus 207 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI-~VIPEiD 285 (552)
++.++.+.++++++.++..+...+. ++.. +..-..++.+++++++++|+ .| .|.
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I~--~tGG---------------------EPll~~~l~~iv~~l~~~g~~~v--~i~ 91 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKVK--ITGG---------------------EPLLRKDLIEIIRRIKDYGIKDV--SMT 91 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEE--EECc---------------------ccccccCHHHHHHHHHhCCCceE--EEE
Confidence 4678999999999999888776544 3322 22234578899999999988 43 355
Q ss_pred CCCc
Q 008821 286 VPGH 289 (552)
Q Consensus 286 ~PGH 289 (552)
|-|.
T Consensus 92 TNG~ 95 (302)
T TIGR02668 92 TNGI 95 (302)
T ss_pred cCch
Confidence 6664
No 175
>PRK09989 hypothetical protein; Provisional
Probab=28.13 E-value=1.1e+02 Score=30.38 Aligned_cols=78 Identities=14% Similarity=0.009 Sum_probs=46.7
Q ss_pred ccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 008821 199 RGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGI 278 (552)
Q Consensus 199 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI 278 (552)
=|+++|+.--+..=..+..+|+. ++=-..|+|+.|.... ..| ..|. =++.++++..++.|.
T Consensus 173 v~l~lD~~h~~~~~~~~~~~i~~---~~~ri~hvHi~D~~~~-----~~p--G~G~---------id~~~i~~al~~~Gy 233 (258)
T PRK09989 173 VFIQLDTFHAQKVDGNLTHLIRD---YAGKYAHVQIAGLPDR-----HEP--DDGE---------INYPWLFRLFDEVGY 233 (258)
T ss_pred eEEEeehHhHHHcCCCHHHHHHH---hhhhEEEEEECCCCCC-----CCC--CCCC---------cCHHHHHHHHHHcCC
Confidence 38899987433221123333333 2223569999983221 111 1121 278889999999888
Q ss_pred E--EEEeecCCCccchHhh
Q 008821 279 N--VMAEVDVPGHAESWGA 295 (552)
Q Consensus 279 ~--VIPEiD~PGH~~a~~~ 295 (552)
+ |..|.--.||+...++
T Consensus 234 ~g~is~E~~~~~~~~~~~~ 252 (258)
T PRK09989 234 QGWIGCEYKPRGLTEEGLG 252 (258)
T ss_pred CeEEEEEEeeCCCCHHHHH
Confidence 5 8888888898876544
No 176
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=28.09 E-value=1.4e+02 Score=29.98 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCC
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFE 335 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~ 335 (552)
.+.|.-++...++++|+++||+|- ||+..|....|.-.. +.+.++..+.+.+-+++++.-|.++
T Consensus 10 ~G~~n~~~~D~~~~~a~~~gi~v~------gH~l~W~~~~P~W~~--------~~~~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 10 RGQFNFSGADAIVNFAKENGIKVR------GHTLVWHSQTPDWVF--------NLSKETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CCccChHHHHHHHHHHHHCCCEEE------EEEEeecccCCHhhh--------cCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 467889999999999999999995 787655444443211 0114455666677777776666543
No 177
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=27.92 E-value=5.4e+02 Score=27.01 Aligned_cols=133 Identities=14% Similarity=0.201 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecCCccc-cccCCCCCcc-----ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecC
Q 008821 213 DVIKQIIESMSYAKLNVLHWHIIDEQSFP-LEVPTYPNLW-----KGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDV 286 (552)
Q Consensus 213 ~~lk~~Id~ma~~KlN~lh~HltDdq~~r-le~~~~P~l~-----~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~ 286 (552)
+.=|++++.|..+++=+=-=|++|.--|- +++.+.|-+. +.-+....-.|-+++|.|++-----||..+|.+-.
T Consensus 149 ~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~fl~ 228 (313)
T COG2355 149 PFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPAFLR 228 (313)
T ss_pred HHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehhhcc
Confidence 33478888888888887777888776553 3555666554 11123445589999999999988889999998877
Q ss_pred CCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCc----CCCCC---HHHHHHH
Q 008821 287 PGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTD----CWSST---PHVKKWL 359 (552)
Q Consensus 287 PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~----~w~~~---p~~~~~~ 359 (552)
||- ....+.+=+-+-++.+.+++.-+.+=||.|=.... .++.- |.+.+.+
T Consensus 229 ~~~-----------------------~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L 285 (313)
T COG2355 229 PGG-----------------------AARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAAL 285 (313)
T ss_pred CCC-----------------------CCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHHHH
Confidence 621 01112333444456677788778888888854322 23333 3444555
Q ss_pred HHcCCChHH
Q 008821 360 RDHKLTAKE 368 (552)
Q Consensus 360 ~~~g~~~~~ 368 (552)
.++|++..+
T Consensus 286 ~~~G~~e~~ 294 (313)
T COG2355 286 IERGYSEEE 294 (313)
T ss_pred HHcCCCHHH
Confidence 677887653
No 178
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.49 E-value=87 Score=31.56 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
++.+++.|+..+..+...+-++ |++... . +... .......+.+++|.++|+++||+|.-|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~-~-~~~~-----~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLA-----GYDVYY-E-QANN-----ETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-----Cccccc-c-ccHH-----HHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 6679999999999999988764 221100 0 0000 0001245688999999999999999996
No 179
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=27.44 E-value=2e+02 Score=29.59 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCC-ccccccCCCCCcc-ccC------CC-CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQ-SFPLEVPTYPNLW-KGA------YS-KWERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq-~~rle~~~~P~l~-~Ga------~~-~~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
..+..+.+++..+..++|++++-+.-.. +..-. ..+|... .+. ++ .+..| =+.+..+|++|.++||.+.
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~Y-F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAY-FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----H-HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHH-HHHHHHHHHHHHHCCCeEE
Confidence 4578899999999999999999886431 22111 1223222 010 00 01111 2458899999999999975
Q ss_pred EeecCCCccc-----hHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeeeCCCC
Q 008821 282 AEVDVPGHAE-----SWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHLGGDE 343 (552)
Q Consensus 282 PEiD~PGH~~-----a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE 343 (552)
- +|-|-. .|... +. ..+.+....+++=|+.-+. -||...+-+|||.
T Consensus 106 l---v~~wg~~~~~~~Wg~~-~~-----------~m~~e~~~~Y~~yv~~Ry~-~~~NviW~l~gd~ 156 (289)
T PF13204_consen 106 L---VPFWGCPYVPGTWGFG-PN-----------IMPPENAERYGRYVVARYG-AYPNVIWILGGDY 156 (289)
T ss_dssp E---ESS-HHHHH--------TT-----------SS-HHHHHHHHHHHHHHHT-T-SSEEEEEESSS
T ss_pred E---EEEECCcccccccccc-cc-----------CCCHHHHHHHHHHHHHHHh-cCCCCEEEecCcc
Confidence 2 344411 22221 11 1223445556666665554 3677788899999
No 180
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.94 E-value=52 Score=32.07 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeecCCcccc---ccCCCCCccccCCCCCCCCCHHHH-----------------HHH
Q 008821 210 LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPL---EVPTYPNLWKGAYSKWERYTVEDA-----------------HEI 269 (552)
Q Consensus 210 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rl---e~~~~P~l~~Ga~~~~~~YT~~ei-----------------~el 269 (552)
.+.+...++++.|..-++..+-+-++...+... -.+.||++..|+ +..+|.+|+ .++
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGA---GTV~~~e~a~~a~~aGA~FivSP~~~~~v 93 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGA---GTVLTAEQAEAAIAAGAQFIVSPGFDPEV 93 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEE---ES--SHHHHHHHHHHT-SEEEESS--HHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEE---EeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 356888999999999999999998876644321 123678887664 345666665 478
Q ss_pred HHHHHHcCCEEEEeecCCCccchHhh-hCCCCCCCCCCCCCCCCCChhH-HHHHHHHHHHHHhhCCC-CeeeeCCCCc
Q 008821 270 VSFAKMRGINVMAEVDVPGHAESWGA-GYPNLWPSPSCREPLDVSKNFT-FEVISGILSDLRKIFPF-ELFHLGGDEV 344 (552)
Q Consensus 270 v~yA~~rgI~VIPEiD~PGH~~a~~~-~yp~l~~~~~~~~~l~~~~~~t-~~fl~~vl~E~~~lF~~-~~iHiGgDEv 344 (552)
+++|+++||-+||-+=||.-...... +..-+ -+=|...-- ..+ ++.+...||. +++=.||=..
T Consensus 94 ~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~v--------K~FPA~~~GG~~~----ik~l~~p~p~~~~~ptGGV~~ 159 (196)
T PF01081_consen 94 IEYAREYGIPYIPGVMTPTEIMQALEAGADIV--------KLFPAGALGGPSY----IKALRGPFPDLPFMPTGGVNP 159 (196)
T ss_dssp HHHHHHHTSEEEEEESSHHHHHHHHHTT-SEE--------EETTTTTTTHHHH----HHHHHTTTTT-EEEEBSS--T
T ss_pred HHHHHHcCCcccCCcCCHHHHHHHHHCCCCEE--------EEecchhcCcHHH----HHHHhccCCCCeEEEcCCCCH
Confidence 89999999999999999987754433 22211 011111111 233 5556677875 7887777443
No 181
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.93 E-value=3.4e+02 Score=27.42 Aligned_cols=52 Identities=2% Similarity=-0.128 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 214 VIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 214 ~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
-+.+.++.++..+++.+++-..+-++|.- ..++.++++++-+.+.++++.+.
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRR----------------PMLEEEVIDWFKAALETNKNLSQ 63 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCC----------------CCCCHHHHHHHHHHHHHcCCCCc
Confidence 35778999999999999998776666642 33678899999999999998743
No 182
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=26.65 E-value=3.1e+02 Score=29.97 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=44.4
Q ss_pred ceecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 008821 201 LLIDTSRHY-LPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGIN 279 (552)
Q Consensus 201 ~mlD~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~ 279 (552)
++++.+-+| ++++.+..-.........++=-+-++. |+-| -+..||++++..|+.+|.+++|.
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN--------PsNP--------LG~~~~~e~L~~ll~Fa~~kniH 261 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN--------PSNP--------LGTTLSPEELISLLNFASRKNIH 261 (471)
T ss_pred EEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC--------CCCC--------CCCccCHHHHHHHHHHHhhcceE
Confidence 355555555 556666666666655555554444431 2223 24579999999999999999999
Q ss_pred EEEe
Q 008821 280 VMAE 283 (552)
Q Consensus 280 VIPE 283 (552)
||-.
T Consensus 262 vI~D 265 (471)
T KOG0256|consen 262 VISD 265 (471)
T ss_pred EEee
Confidence 7753
No 183
>PRK08361 aspartate aminotransferase; Provisional
Probab=26.53 E-value=2.1e+02 Score=30.32 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..++.+++++|++.|++++|-||-
T Consensus 180 G~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 180 GATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 4578999999999999999997763
No 184
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=26.32 E-value=93 Score=32.93 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVM 281 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VI 281 (552)
+..||.+++++|++.|+++++-||
T Consensus 179 G~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 179 TAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEE
Confidence 457999999999999999998776
No 185
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.25 E-value=1e+02 Score=30.95 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
.++.+++.|+.++.++.+.+-++-.+. + .. +..++. -.-..+.+++|.++|+++||++.-|-
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~~~--~-~~-~~~~~~--------~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLAGYDV--Y-YE-EKSEET--------RQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCccc--c-cc-cccHHH--------HHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 367789999999999999987642110 0 00 000000 01234679999999999999999986
No 186
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=26.04 E-value=45 Score=26.59 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCc
Q 008821 206 SRHYLPVDVIKQIIESMSY-AKLN 228 (552)
Q Consensus 206 aR~f~~~~~lk~~Id~ma~-~KlN 228 (552)
.|||+|...+|++++.|.. |+++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4999999999999999998 8766
No 187
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=26.02 E-value=2.1e+02 Score=30.64 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeecC
Q 008821 208 HYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR-GINVMAEVDV 286 (552)
Q Consensus 208 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~r-gI~VIPEiD~ 286 (552)
..++.+.++++++.++..+...+.+ |- ++..-..|+.+|++++++. |+.. ..|.|
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~--tG---------------------GEPllr~dl~eli~~l~~~~gi~~-i~itT 143 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRL--TG---------------------GEPTLRKDIEDICLQLSSLKGLKT-LAMTT 143 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEE--EC---------------------CCCcchhhHHHHHHHHHhcCCCce-EEEee
Confidence 5689999999999999888776554 31 2233355899999999997 8753 24566
Q ss_pred CCcc
Q 008821 287 PGHA 290 (552)
Q Consensus 287 PGH~ 290 (552)
-|..
T Consensus 144 NG~l 147 (373)
T PLN02951 144 NGIT 147 (373)
T ss_pred Ccch
Confidence 6754
No 188
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=25.64 E-value=2.2e+02 Score=29.69 Aligned_cols=25 Identities=12% Similarity=-0.105 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..++.+++++|++.|+++|+-||-
T Consensus 156 G~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 156 GLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 3478999999999999999998774
No 189
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=25.28 E-value=3.4e+02 Score=32.21 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=81.2
Q ss_pred EcCCCCccccceecCCCCCCCHHHHHHHHHHHH----hCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHH
Q 008821 191 QDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMS----YAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDA 266 (552)
Q Consensus 191 ~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma----~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei 266 (552)
++-|...|||+=+...+.| | +.++..|+.+. ..+.+-+++- +|.++ |.+|+
T Consensus 590 E~NP~LG~RGir~~l~~~~-~-~lf~~qlraI~ral~d~G~~~~~Im-------------~PmV~----------s~eE~ 644 (782)
T TIGR01418 590 EENPMLGWRGASRYYSESY-E-EAFRLECRAIKRVREEMGLTNVEVM-------------IPFVR----------TPEEG 644 (782)
T ss_pred CCCcccccchhhhhccccc-H-HHHHHHHHHHHHHHHhcCCCCeEEE-------------ecCCC----------CHHHH
Confidence 5679999999955443311 2 33333344332 3344444442 35553 89999
Q ss_pred HHHHHHHHHcC-------CEEEEeecCCCccchHh--hhCCCC---CCCC-------------CCCCCCCCCChhHHHHH
Q 008821 267 HEIVSFAKMRG-------INVMAEVDVPGHAESWG--AGYPNL---WPSP-------------SCREPLDVSKNFTFEVI 321 (552)
Q Consensus 267 ~elv~yA~~rg-------I~VIPEiD~PGH~~a~~--~~yp~l---~~~~-------------~~~~~l~~~~~~t~~fl 321 (552)
+++++.++..| +.|+.-|++|.=+..+- ..+=++ .+++ ......++.+|++.+.+
T Consensus 645 ~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i 724 (782)
T TIGR01418 645 KRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLI 724 (782)
T ss_pred HHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHH
Confidence 99999988754 56888899997654321 122222 1111 01225678899999999
Q ss_pred HHHHHHHHhhCCCCeeeeCCCCcCCcCCCCCHHHHHHHHHcCCC
Q 008821 322 SGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLT 365 (552)
Q Consensus 322 ~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~ 365 (552)
+.+++..... ...+-+.|+... ++|....++-..|++
T Consensus 725 ~~vi~~a~~~--g~~vgicge~~~-----~~p~~~~~l~~~G~~ 761 (782)
T TIGR01418 725 EMAIKAAKEH--GKKVGICGQAPS-----DYPEVVEFLVEEGID 761 (782)
T ss_pred HHHHHHHHhc--CCeEEEeCCCCC-----CCHHHHHHHHHcCCC
Confidence 9998877652 222333222110 135555566666654
No 190
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=25.04 E-value=1.4e+02 Score=30.97 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=37.8
Q ss_pred HHH-HHHHHHHHHhCCCcE------EEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 212 VDV-IKQIIESMSYAKLNV------LHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 212 ~~~-lk~~Id~ma~~KlN~------lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
++. -|.+++.+|..=-|. +|.|.+ +....||++. ...|++|+.+.++||++.|++-+.
T Consensus 269 lecCTkpI~~wiae~~g~~~~vNiM~QY~P~------ykA~eypeI~-------R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 269 LECCTKPILRWIAENLGNDVRVNIMFQYRPE------YKAEEYPEIN-------RRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred hhhccHHHHHHHHHhCCCCeeEEehhhccch------hhhhhchhhc-------ccCCHHHHHHHHHHHHHcCCceee
Confidence 444 466677776653321 222221 1223678874 568999999999999999998654
No 191
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=24.51 E-value=45 Score=36.79 Aligned_cols=22 Identities=50% Similarity=0.844 Sum_probs=16.3
Q ss_pred HHHHHcCCEEEE-------------eecCCCccch
Q 008821 271 SFAKMRGINVMA-------------EVDVPGHAES 292 (552)
Q Consensus 271 ~yA~~rgI~VIP-------------EiD~PGH~~a 292 (552)
+.-++|||+|.- =+|+|||+..
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 345788887754 4999999974
No 192
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.26 E-value=3.7e+02 Score=27.69 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEV 284 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEi 284 (552)
+.+.+++.++.+...+.+.+-+.++...+.+- .......+|.++++++++.|+++|+.|.-..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~-----------~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG-----------DPPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC-----------CCCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 47888999999999999999888754322111 0012235899999999999999999987644
No 193
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=24.21 E-value=5.6e+02 Score=26.25 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCEEEEeecCCC--ccchHhhhCCCCCCCCCCCCCCCCCChhHH-HHHHHHHHHHHhhCCCCeeeeCCC
Q 008821 266 AHEIVSFAKMRGINVMAEVDVPG--HAESWGAGYPNLWPSPSCREPLDVSKNFTF-EVISGILSDLRKIFPFELFHLGGD 342 (552)
Q Consensus 266 i~elv~yA~~rgI~VIPEiD~PG--H~~a~~~~yp~l~~~~~~~~~l~~~~~~t~-~fl~~vl~E~~~lF~~~~iHiGgD 342 (552)
..+++..|+++|++|+|.|-..+ +..+- ....+ ..+++.. .|++++++-+.+. |-|
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~--~~~~~-----------l~~~~~r~~fi~~iv~~l~~~--------~~D 105 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSE--LAHAV-----------LSNPEARQRLINNILALAKKY--------GYD 105 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHH--HHHHH-----------hcCHHHHHHHHHHHHHHHHHh--------CCC
Confidence 36899999999999999995432 11100 00000 2355544 4888888776553 233
Q ss_pred CcCCcCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCe
Q 008821 343 EVNTDCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWT 387 (552)
Q Consensus 343 Ev~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~ 387 (552)
=+.. .|+.-+ ....+.|..|++.+...++++|+.
T Consensus 106 Gidi-DwE~~~----------~~d~~~~~~fl~~lr~~l~~~~~~ 139 (313)
T cd02874 106 GVNI-DFENVP----------PEDREAYTQFLRELSDRLHPAGYT 139 (313)
T ss_pred cEEE-ecccCC----------HHHHHHHHHHHHHHHHHhhhcCcE
Confidence 2221 133210 012356889999999988877764
No 194
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.09 E-value=5.6e+02 Score=27.44 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=50.9
Q ss_pred cCCCCccccceecCCCCCCCHHHHHHHHHHH-HhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHH
Q 008821 192 DKPRFAFRGLLIDTSRHYLPVDVIKQIIESM-SYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIV 270 (552)
Q Consensus 192 D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~m-a~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv 270 (552)
|+|.=..|.-+.-+.+.-++++.|.+.|+.. ...+. .+++ ++.-.|.++ -+.+|+++|+
T Consensus 241 ~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~-~V~i----------eyvLI~GvN---------Ds~eda~~L~ 300 (368)
T PRK14456 241 HSADQEKRERLMPQAARDYPLDELREALIGYASKTGE-PVTL----------VYMLLEGIN---------DSPEDARKLI 300 (368)
T ss_pred cCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCC-eEEE----------EEEEEcCCC---------CCHHHHHHHH
Confidence 7777777887777776556999999988854 33332 2222 111122221 3788999999
Q ss_pred HHHHHc--CCEEEEeecCCC
Q 008821 271 SFAKMR--GINVMAEVDVPG 288 (552)
Q Consensus 271 ~yA~~r--gI~VIPEiD~PG 288 (552)
++++.+ +|++||--.+++
T Consensus 301 ~~l~~~~~~VnlIpyn~~~~ 320 (368)
T PRK14456 301 RFASRFFCKINLIDYNSIVN 320 (368)
T ss_pred HHHhcCCCeeEEeeeccCCC
Confidence 999997 778888754443
No 195
>PRK13840 sucrose phosphorylase; Provisional
Probab=23.69 E-value=2.7e+02 Score=31.20 Aligned_cols=63 Identities=11% Similarity=0.232 Sum_probs=43.7
Q ss_pred CHHHHHHHHH-HHHhCCCcEEEEEeecCCccccccCCC-CC-ccccCCCCC-------CCCCHHHHHHHHHHHHHcCCEE
Q 008821 211 PVDVIKQIIE-SMSYAKLNVLHWHIIDEQSFPLEVPTY-PN-LWKGAYSKW-------ERYTVEDAHEIVSFAKMRGINV 280 (552)
Q Consensus 211 ~~~~lk~~Id-~ma~~KlN~lh~HltDdq~~rle~~~~-P~-l~~Ga~~~~-------~~YT~~ei~elv~yA~~rgI~V 280 (552)
++..|.+.+| .+... ++.+||= |-| |- ...+.|... .+=|-+|+++|++ ||+|
T Consensus 18 dL~gl~~kLd~yL~~l-v~~vhll-----------Pff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----gikl 80 (495)
T PRK13840 18 GLKSLTALLDGRLDGL-FGGVHIL-----------PFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDI 80 (495)
T ss_pred CHhHHHHHHHHHHHHH-hCeEEEC-----------CCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeE
Confidence 6788888889 48888 9999883 122 11 121223222 2238899999985 9999
Q ss_pred EEeecCCCccc
Q 008821 281 MAEVDVPGHAE 291 (552)
Q Consensus 281 IPEiD~PGH~~ 291 (552)
|-.+ ++-|+.
T Consensus 81 mlDl-V~NHtS 90 (495)
T PRK13840 81 MADL-IVNHMS 90 (495)
T ss_pred EEEE-CCCcCC
Confidence 9999 999986
No 196
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=23.67 E-value=67 Score=36.15 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCEEE----------------EeecCCCccch
Q 008821 262 TVEDAHEIVSFAKMRGINVM----------------AEVDVPGHAES 292 (552)
Q Consensus 262 T~~ei~elv~yA~~rgI~VI----------------PEiD~PGH~~a 292 (552)
-++++-+=++--|+|||+|- =-||||||+..
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 36777777888899999874 35999999864
No 197
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.65 E-value=84 Score=31.33 Aligned_cols=76 Identities=13% Similarity=0.041 Sum_probs=48.1
Q ss_pred ccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHc
Q 008821 197 AFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMR 276 (552)
Q Consensus 197 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~r 276 (552)
..|++-+|.++.-...+.+++.|+.+..++..++..+.... + +..... ..-....+.++++.++|+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~---~------~~~~~~---~~~~~~~~~l~~l~~~a~~~ 136 (258)
T PRK09997 69 GERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKT---P------AGFSSE---QIHATLVENLRYAANMLMKE 136 (258)
T ss_pred CcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCC---C------CCCCHH---HHHHHHHHHHHHHHHHHHHc
Confidence 34555555554333357799999999999999887653210 0 000000 00013456789999999999
Q ss_pred CCEEEEee
Q 008821 277 GINVMAEV 284 (552)
Q Consensus 277 gI~VIPEi 284 (552)
||++.-|-
T Consensus 137 Gv~l~lE~ 144 (258)
T PRK09997 137 DILLLIEP 144 (258)
T ss_pred CCEEEEEe
Confidence 99999984
No 198
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.26 E-value=7.5e+02 Score=24.63 Aligned_cols=133 Identities=11% Similarity=0.138 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchH
Q 008821 214 VIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESW 293 (552)
Q Consensus 214 ~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~ 293 (552)
.+.+.++.++..++-.+.+.+.+... ++ ....++.+++++|.+.++++||+|.- +-+.+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~-------~~--------~~~~~~~~~~~~l~~~l~~~gl~i~~-~~~~~~~~-- 83 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDE-------RL--------ARLDWSREQRLALVNALVETGFRVNS-MCLSAHRR-- 83 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCcccc-------ch--------hccCCCHHHHHHHHHHHHHcCCceeE-Eecccccc--
Confidence 46788999999999999986543211 00 11236899999999999999999853 33344421
Q ss_pred hhhCCCCCCCCCCCCCCCC-CChhHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCcCCCCCHHHHHHHHHcCCChHHHHHH
Q 008821 294 GAGYPNLWPSPSCREPLDV-SKNFTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAKEAYQY 372 (552)
Q Consensus 294 ~~~yp~l~~~~~~~~~l~~-~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~ 372 (552)
++ +. ..++ ..++..+.++..++.. ..+..+++-+++.+.... ...+. ..+.+..
T Consensus 84 ---~~-~~-------~~~~~~r~~~~~~~~~~i~~a-~~lG~~~i~~~~~~~~~~--~~~~~-----------~~~~~~~ 138 (283)
T PRK13209 84 ---FP-LG-------SEDDAVRAQALEIMRKAIQLA-QDLGIRVIQLAGYDVYYE--QANNE-----------TRRRFID 138 (283)
T ss_pred ---cC-CC-------CCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEECCcccccc--ccHHH-----------HHHHHHH
Confidence 00 00 0010 1233455566666543 345566776665432110 00011 1134455
Q ss_pred HHHHHHHHHHhcCCeee
Q 008821 373 FVLTAQKIAISKNWTPV 389 (552)
Q Consensus 373 f~~~~~~~~~~~G~~~~ 389 (552)
.++.+.++++++|.+..
T Consensus 139 ~l~~l~~~A~~~GV~i~ 155 (283)
T PRK13209 139 GLKESVELASRASVTLA 155 (283)
T ss_pred HHHHHHHHHHHhCCEEE
Confidence 67777888888887543
No 199
>PRK05764 aspartate aminotransferase; Provisional
Probab=23.08 E-value=1.2e+02 Score=32.07 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+..+|.+++++|++.|+++|+-||-.
T Consensus 178 G~~~~~~~~~~l~~~a~~~~~~ii~D 203 (393)
T PRK05764 178 GAVYSPEELEAIADVAVEHDIWVLSD 203 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEEe
Confidence 45689999999999999999988743
No 200
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=22.87 E-value=6.8e+02 Score=27.44 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=68.7
Q ss_pred EEEEEcCchhhhHHHHHHHHhhccCCCCceeEeeccceEEEcCCCCc-ccc--ceecCCCCCCCHHHHHHHHHHHHhCCC
Q 008821 151 ATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFA-FRG--LLIDTSRHYLPVDVIKQIIESMSYAKL 227 (552)
Q Consensus 151 i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~i~~~~~~I~D~P~f~-~RG--~mlD~aR~f~~~~~lk~~Id~ma~~Kl 227 (552)
|-|.|.+..---+|-.-+.+|...+....-+.+....-+|..-|-|+ .+- --+|++=-+.|.+.....++.+...+.
T Consensus 10 iavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~gv 89 (447)
T TIGR02717 10 VAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEKGV 89 (447)
T ss_pred EEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhcCC
Confidence 66666665444456677777776443221121211111344455443 111 136888788999999999999999998
Q ss_pred cEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE-E
Q 008821 228 NVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVM-A 282 (552)
Q Consensus 228 N~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VI-P 282 (552)
-.+.+.- . .|++.. . . -.+.-++|+++|+++||+|+ |
T Consensus 90 ~~~vi~s---~-------gf~e~g--~---~---g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 90 KGAVVIT---A-------GFKEVG--E---E---GAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred CEEEEEC---C-------CccccC--c---c---hHHHHHHHHHHHHHcCCEEEec
Confidence 8777742 2 334431 0 0 12234789999999999988 5
No 201
>COG5587 Uncharacterized conserved protein [Function unknown]
Probab=22.79 E-value=1.1e+02 Score=29.33 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=33.3
Q ss_pred CCeeeeCCCCcCC--cCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCe
Q 008821 334 FELFHLGGDEVNT--DCWSSTPHVKKWLRDHKLTAKEAYQYFVLTAQKIAISKNWT 387 (552)
Q Consensus 334 ~~~iHiGgDEv~~--~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~G~~ 387 (552)
+=|||||-||++. .-|.-...++..|++.=.+..+.+. .+.+-++++|.+
T Consensus 104 ~FYI~igl~gcfagvawWqP~~~ll~amR~aI~~~Pd~fr----amv~~lkkngl~ 155 (228)
T COG5587 104 SFYIQIGLDGCFAGVAWWQPASDLLRAMRQAIFDNPDSFR----AMVDPLKKNGLT 155 (228)
T ss_pred cEEEEecCCcceeeeeeeCcHHHHHHHHHHHHhcCcHHHH----HHHhHHHhCCce
Confidence 3599999999874 4577666777777765444444432 566667777765
No 202
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=22.63 E-value=34 Score=35.87 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCC--ChhHHHHHHHHHHHHHhhCCCC
Q 008821 258 WERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVS--KNFTFEVISGILSDLRKIFPFE 335 (552)
Q Consensus 258 ~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~--~~~t~~fl~~vl~E~~~lF~~~ 335 (552)
..-+|-+++|.|.+-----||..+|.+ +... ...+.+-+-+-++-+.++....
T Consensus 211 ~RNltDe~iraia~~GGviGi~~~~~f-------------------------l~~~~~~~~~~~~~~~Hi~y~~~l~G~d 265 (320)
T PF01244_consen 211 PRNLTDEQIRAIAERGGVIGINFYPAF-------------------------LGDDWDPRASLDDLVDHIDYIVDLVGID 265 (320)
T ss_dssp TTSB-HHHHHHHHHTT-EEEEESSHHH-------------------------HSTTHSSG-BHHHHHHHHHHHHHHH-GG
T ss_pred CCCCCHHHHHHHHHCCcEEEEEcchhh-------------------------hcccccccccHHHHHHHHHHHHHhcCCC
Confidence 345899999988765444444443322 1111 2233343444455566676667
Q ss_pred eeeeCCCCc-----C--CcCCCCCHHHHHHHHHcCCChHHHH
Q 008821 336 LFHLGGDEV-----N--TDCWSSTPHVKKWLRDHKLTAKEAY 370 (552)
Q Consensus 336 ~iHiGgDEv-----~--~~~w~~~p~~~~~~~~~g~~~~~l~ 370 (552)
.+=||+|=- . ......-|.+.+.|.++|++..++-
T Consensus 266 hVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i~ 307 (320)
T PF01244_consen 266 HVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRGYSEEDIE 307 (320)
T ss_dssp GEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTTS-HHHHH
T ss_pred eEEECcccCCCCCCCCccCCHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888831 1 1223455788888889999876543
No 203
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.51 E-value=7.8e+02 Score=24.56 Aligned_cols=131 Identities=11% Similarity=0.193 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCCccch
Q 008821 213 DVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPGHAES 292 (552)
Q Consensus 213 ~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a 292 (552)
..+.+.++.++.+++..+.+.+.+... . + ....++.++++++.+..+++||.|.- +.+.+|..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~-------~--~------~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~- 78 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDD-------R--L------SRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRR- 78 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccc-------h--h------hccCCCHHHHHHHHHHHHHcCCCcee-eecCCCcc-
Confidence 345677888888999888885432110 0 0 11236899999999999999998863 22222211
Q ss_pred HhhhCCCCCCCCCCCCCCCCCCh----hHHHHHHHHHHHHHhhCCCCeeeeCCCCcCCcCCCCCHHHHHHHHHcCCChHH
Q 008821 293 WGAGYPNLWPSPSCREPLDVSKN----FTFEVISGILSDLRKIFPFELFHLGGDEVNTDCWSSTPHVKKWLRDHKLTAKE 368 (552)
Q Consensus 293 ~~~~yp~l~~~~~~~~~l~~~~~----~t~~fl~~vl~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~ 368 (552)
+ ++...++ +..+.+++.++-... +..+++.+++=+... .... .+ ..+
T Consensus 79 ----~-----------~l~~~~~~~r~~~~~~~~~~i~~a~~-lG~~~v~~~~~~~~~---~~~~--~~--------~~~ 129 (279)
T TIGR00542 79 ----F-----------PLGSKDKAVRQQGLEIMEKAIQLARD-LGIRTIQLAGYDVYY---EEHD--EE--------TRR 129 (279)
T ss_pred ----C-----------cCCCcCHHHHHHHHHHHHHHHHHHHH-hCCCEEEecCccccc---CcCC--HH--------HHH
Confidence 0 1111133 344555666644333 455777776522211 1000 00 013
Q ss_pred HHHHHHHHHHHHHHhcCCeee
Q 008821 369 AYQYFVLTAQKIAISKNWTPV 389 (552)
Q Consensus 369 l~~~f~~~~~~~~~~~G~~~~ 389 (552)
.+...++++.+++++.|.+..
T Consensus 130 ~~~~~l~~l~~~A~~~Gv~l~ 150 (279)
T TIGR00542 130 RFREGLKEAVELAARAQVTLA 150 (279)
T ss_pred HHHHHHHHHHHHHHHcCCEEE
Confidence 344566777788888888653
No 204
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=22.40 E-value=80 Score=34.28 Aligned_cols=28 Identities=25% Similarity=0.648 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCEE-------------EEeecCCCccch
Q 008821 265 DAHEIVSFAKMRGINV-------------MAEVDVPGHAES 292 (552)
Q Consensus 265 ei~elv~yA~~rgI~V-------------IPEiD~PGH~~a 292 (552)
-+.++.+.-++|||+| |--||+|||...
T Consensus 75 tvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 75 TVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4667888899999998 566999999864
No 205
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.30 E-value=3e+02 Score=29.00 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=47.1
Q ss_pred CCCCC-CHHHHHHHHHHHHhCCCcE--EEEEeecCCccccccCCCCC-cc-c-cCCC--------CCCCCCHHHHHHHHH
Q 008821 206 SRHYL-PVDVIKQIIESMSYAKLNV--LHWHIIDEQSFPLEVPTYPN-LW-K-GAYS--------KWERYTVEDAHEIVS 271 (552)
Q Consensus 206 aR~f~-~~~~lk~~Id~ma~~KlN~--lh~HltDdq~~rle~~~~P~-l~-~-Ga~~--------~~~~YT~~ei~elv~ 271 (552)
+-|+- +++..|++|+..+..+.+. ||.+-.|. + -.+..+. .. . +.|. ..-..+.++.++|.+
T Consensus 9 G~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~--l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~ 84 (327)
T TIGR03586 9 SANHNGSLERALAMIEAAKAAGADAIKLQTYTPDT--I--TLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFE 84 (327)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHH--h--hccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHH
Confidence 33444 6999999999999998884 55443332 1 1111111 00 1 1121 012468899999999
Q ss_pred HHHHcCCEEEEee
Q 008821 272 FAKMRGINVMAEV 284 (552)
Q Consensus 272 yA~~rgI~VIPEi 284 (552)
||+++||.++-++
T Consensus 85 ~~~~~Gi~~~stp 97 (327)
T TIGR03586 85 RAKELGLTIFSSP 97 (327)
T ss_pred HHHHhCCcEEEcc
Confidence 9999999998764
No 206
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.19 E-value=85 Score=31.61 Aligned_cols=51 Identities=10% Similarity=0.297 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCeeee
Q 008821 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFELFHL 339 (552)
Q Consensus 260 ~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~iHi 339 (552)
.+|.+++++|.+||+++||..+--. -+.++.+|+.++ ..+++=|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stp----------------------------fd~~s~d~l~~~--------~~~~~KI 95 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTP----------------------------FDEESVDFLEEL--------GVPAYKI 95 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-----------------------------SHHHHHHHHHH--------T-SEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECC----------------------------CCHHHHHHHHHc--------CCCEEEe
Confidence 4899999999999999999986532 356677776543 4578888
Q ss_pred CCCCcCC
Q 008821 340 GGDEVNT 346 (552)
Q Consensus 340 GgDEv~~ 346 (552)
+.-|..+
T Consensus 96 aS~dl~n 102 (241)
T PF03102_consen 96 ASGDLTN 102 (241)
T ss_dssp -GGGTT-
T ss_pred ccccccC
Confidence 8888764
No 207
>PRK05967 cystathionine beta-lyase; Provisional
Probab=21.61 E-value=1.3e+02 Score=32.45 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 259 ERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 259 ~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
..++..|+++|++.|+++|+-||-.
T Consensus 161 P~l~v~dl~~I~~la~~~g~~vvVD 185 (395)
T PRK05967 161 NTFEMQDIPAIAEAAHRHGAIVMMD 185 (395)
T ss_pred CCCcHHHHHHHHHHHHHhCCEEEEE
Confidence 3579999999999999999987754
No 208
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=21.60 E-value=4.8e+02 Score=26.50 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecCCC
Q 008821 209 YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAEVDVPG 288 (552)
Q Consensus 209 f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPEiD~PG 288 (552)
.+|.+.+++-|..|...++|.+=.| .+|. =.++.+.|.+.||-|+.|+...+
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~------------h~p~----------------~~~~~~~cD~~GilV~~e~~~~~ 83 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTH------------HYPP----------------SPRFYDLCDELGILVWQEIPLEG 83 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEET------------TS------------------SHHHHHHHHHHT-EEEEE-S-BS
T ss_pred cCCHHHHHHHHHHHHhcCcceEEcc------------cccC----------------cHHHHHHHhhcCCEEEEeccccc
Confidence 3688999999999999999988764 1221 14678889999999999998777
Q ss_pred ccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhC---CCC-eeeeCCCCcCCcCCCCCHHHHHHHHHcCC
Q 008821 289 HAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLRKIF---PFE-LFHLGGDEVNTDCWSSTPHVKKWLRDHKL 364 (552)
Q Consensus 289 H~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF---~~~-~iHiGgDEv~~~~w~~~p~~~~~~~~~g~ 364 (552)
|...- ... .......+++..+.+.+-++|+..-. |+= .+-+| -|.
T Consensus 84 ~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~g-NE~-------------------- 132 (298)
T PF02836_consen 84 HGSWQ-----DFG-----NCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLG-NES-------------------- 132 (298)
T ss_dssp CTSSS-----STS-----CTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEE-ESS--------------------
T ss_pred cCccc-----cCC-----ccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecC-ccC--------------------
Confidence 74311 000 00122346666666655566665432 442 33333 555
Q ss_pred ChHHHHHHHHHHHHHHHHhcC-CeeeEeccc
Q 008821 365 TAKEAYQYFVLTAQKIAISKN-WTPVNWEET 394 (552)
Q Consensus 365 ~~~~l~~~f~~~~~~~~~~~G-~~~~~W~d~ 394 (552)
....+++++.+++++.. -+++.+...
T Consensus 133 ----~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 133 ----DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp ----HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred ----ccccchhHHHHHHHhcCCCCceeeccc
Confidence 12345566777777643 356666554
No 209
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.42 E-value=2.2e+02 Score=30.15 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcC
Q 008821 205 TSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRG 277 (552)
Q Consensus 205 ~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rg 277 (552)
.+|..|.++-+++++..++..|+++|---+ -+ | | |..+|+..||++|++-|
T Consensus 234 ~G~~dYdv~kvle~aE~i~~a~idvlIaPv--------~l---P----G-------~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 234 AGRKDYDVKKVLEVAEYIANAGIDVLIAPV--------WL---P----G-------VNDDEMPKIIEWAREIG 284 (414)
T ss_pred cCccccCHHHHHHHHHHHHhCCCCEEEeee--------ec---C----C-------cChHHHHHHHHHHHHhC
Confidence 478899999999999999999999986532 11 2 2 56789999999999998
No 210
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=21.27 E-value=4.2e+02 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCCeEEEEecCCCccceeeEEEEEcCchhhhHHHHHH
Q 008821 131 VDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETF 168 (552)
Q Consensus 131 ~~E~Y~L~i~~~~~~~~~~~i~I~a~~~~G~~~glqTL 168 (552)
..+.|+|+-+.++ .|.|+|++..-+.+|+..-
T Consensus 30 ~~d~F~l~~~~~g------ki~I~G~s~vala~Gl~~Y 61 (86)
T PF12971_consen 30 GKDVFELSSADNG------KIVIRGNSGVALASGLNWY 61 (86)
T ss_dssp TBEEEEEEE-SSS-------EEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCC------eEEEEeCCHHHHHHHHHHH
Confidence 4788999873444 5999999999999999873
No 211
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.11 E-value=3.2e+02 Score=28.71 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 008821 263 VEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 263 ~~ei~elv~yA~~rgI~VIP 282 (552)
++++++|=++|+++||++--
T Consensus 93 ~~~l~~iG~~a~~~~iRLS~ 112 (312)
T TIGR00629 93 QKELREIGELAKTHQHRLTF 112 (312)
T ss_pred HHHHHHHHHHHHHcCeEEEE
Confidence 56899999999999999843
No 212
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=21.08 E-value=93 Score=33.63 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCEEEEeecCCCccc
Q 008821 266 AHEIVSFAKMRGINVMAEVDVPGHAE 291 (552)
Q Consensus 266 i~elv~yA~~rgI~VIPEiD~PGH~~ 291 (552)
+-||++.|++.||+|+-| -|||.-
T Consensus 245 lgeL~~rA~e~gVQvMVE--GPGHvP 268 (423)
T TIGR00190 245 LGELVERAREADVQCMVE--GPGHVP 268 (423)
T ss_pred HHHHHHHHHHcCCeEEEE--CCCCCc
Confidence 456789999999999976 899984
No 213
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=21.04 E-value=2.6e+02 Score=31.72 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008821 212 VDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMA 282 (552)
Q Consensus 212 ~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIP 282 (552)
+..|+|.|+.|..++++++.- +.+||. =|.+|+..|.+||+++||.++.
T Consensus 358 l~NL~RHIenvr~FGvPvVVA-----------INKFd~-----------DTe~Ei~~I~~~c~e~Gv~va~ 406 (557)
T PRK13505 358 FANLERHIENIRKFGVPVVVA-----------INKFVT-----------DTDAEIAALKELCEELGVEVAL 406 (557)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-----------EeCCCC-----------CCHHHHHHHHHHHHHcCCCEEE
Confidence 356889999999999997765 234432 1788999999999999999874
No 214
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.96 E-value=1.2e+02 Score=32.29 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecCCCccchHhhhCCC---CCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhCCCCe
Q 008821 260 RYTVEDAHEIVSFAKMRGINVMAEVDVPGHAESWGAGYPN---LWPSPSCREPLDVSKNFTFEVISGILSDLRKIFPFEL 336 (552)
Q Consensus 260 ~YT~~ei~elv~yA~~rgI~VIPEiD~PGH~~a~~~~yp~---l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~~lF~~~~ 336 (552)
-+|.+|+++.++||.++|.++.--+++.=|.......... |.. ...+.+=.++|.....+. +.+|+--
T Consensus 45 nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e--~GvDaviv~Dpg~i~l~~-------e~~p~l~ 115 (347)
T COG0826 45 NFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVE--LGVDAVIVADPGLIMLAR-------ERGPDLP 115 (347)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHH--cCCCEEEEcCHHHHHHHH-------HhCCCCc
Confidence 4899999999999999999999999999887654321111 110 011223345555554433 3466666
Q ss_pred eeeCCCCcCCcCCCCCHHHHHHHHHcCC
Q 008821 337 FHLGGDEVNTDCWSSTPHVKKWLRDHKL 364 (552)
Q Consensus 337 iHiGgDEv~~~~w~~~p~~~~~~~~~g~ 364 (552)
+|++.-=.- .++.-.++.++.|.
T Consensus 116 ih~S~q~~v-----~N~~~~~f~~~~G~ 138 (347)
T COG0826 116 IHVSTQANV-----TNAETAKFWKELGA 138 (347)
T ss_pred EEEeeeEec-----CCHHHHHHHHHcCC
Confidence 777653221 23344556666654
No 215
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.83 E-value=1.8e+02 Score=30.86 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 008821 211 PVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRGINVMAE 283 (552)
Q Consensus 211 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rgI~VIPE 283 (552)
+.+.++++.+.+...+ |..|++|.--. .+|.- .-..-++++++++.++.+++||.|+.-
T Consensus 266 s~e~a~~La~~l~~l~-~~~~VnLIPyn-------p~~~~------~~~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 266 SPEDALRLAQLIGKNK-KKFKVNLIPFN-------PDPEL------PYERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred CHHHHHHHHHHHhcCC-CceEEEEecCC-------CCCCC------CCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 4677888888887643 23444442111 12211 112348999999999999999999764
No 216
>PRK10626 hypothetical protein; Provisional
Probab=20.75 E-value=3.7e+02 Score=27.08 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhcCC---CccccCCCCCceeecccEEEEcCCeEEECCCcEEEEcCCC-chHHHHHHHHHHHHHHHh
Q 008821 12 LKVIIITALLIIFTSSLS---VSTDVDDSLAYIWPLPAQFSSGNDTLSVDPALCLSVSGKG-SGLKIVEEAFERYKAIIF 87 (552)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~liP~P~~v~~~~g~~~l~~~~~i~~~~~~-~~~~~l~~~~~~~~~~~~ 87 (552)
|+..+++++|+++.++.. -|...-.....|-|.=.+|...+|.+.++++=.+.+.+.. +..+.=++++.+|.+-+.
T Consensus 2 mrk~~l~~~L~l~s~~a~A~~qC~V~l~~DV~Itpq~v~V~~~sg~l~I~~dg~L~inGk~v~L~~~Qqq~~~~Yq~~lr 81 (239)
T PRK10626 2 MRKMLLAALLSLTAMQAQADYQCSVTPQDDVIISPQTVQVVGASGNLVISPDGNVMRNGKQLSLNAAQRQQAKDYQAALR 81 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCeEEcCCeEEEEecCCceEEcCCCCEEECCEEecCCHHHHHHHHHHHHHHH
Confidence 566666666544443221 1332323334444444455666788999887667766542 111223456677776554
Q ss_pred h
Q 008821 88 E 88 (552)
Q Consensus 88 ~ 88 (552)
.
T Consensus 82 ~ 82 (239)
T PRK10626 82 Q 82 (239)
T ss_pred H
Confidence 4
No 217
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.15 E-value=3.7e+02 Score=28.58 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=51.1
Q ss_pred cCCCCccccceecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHH
Q 008821 192 DKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVS 271 (552)
Q Consensus 192 D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~ 271 (552)
|+|.=.-|.-+.-+.++| |++.+.+.++......-..+. +|+.-.|.++ =|.+|+++|.+
T Consensus 219 hA~~~e~R~~l~Pi~~~~-~le~ll~al~~~~~~~~r~v~----------ieyvLI~GvN---------Ds~eda~~L~~ 278 (342)
T PRK14465 219 NHPDPNGRLQIMDIEEKF-PLEELLQAAKDFTRELKRRIT----------FEYVMIPGVN---------MGRENANKLVK 278 (342)
T ss_pred cCCChhhcceEeeccccC-CHHHHHHHHHHHHHHcCCEEE----------EEEEEECCcc---------CCHHHHHHHHH
Confidence 799999999999998887 888888888866542222332 2222334332 37899999999
Q ss_pred HHHH--cCCEEEEe
Q 008821 272 FAKM--RGINVMAE 283 (552)
Q Consensus 272 yA~~--rgI~VIPE 283 (552)
+++. -+|++||-
T Consensus 279 ll~~l~~kVnLIPy 292 (342)
T PRK14465 279 IARSLDCKINVIPL 292 (342)
T ss_pred HHhhCCCcEEEEcc
Confidence 9999 45667774
No 218
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.07 E-value=2e+02 Score=30.43 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=47.2
Q ss_pred CCCCC-CHHHHHHHHHHHHhCCCcE--EEEEeecCCccccccCCCCC-------ccccC--C--CCCCCCCHHHHHHHHH
Q 008821 206 SRHYL-PVDVIKQIIESMSYAKLNV--LHWHIIDEQSFPLEVPTYPN-------LWKGA--Y--SKWERYTVEDAHEIVS 271 (552)
Q Consensus 206 aR~f~-~~~~lk~~Id~ma~~KlN~--lh~HltDdq~~rle~~~~P~-------l~~Ga--~--~~~~~YT~~ei~elv~ 271 (552)
+-|+- +++.-|++||..+..+... ||.+..|+- -.+..+. .+.|. | -..-.++.+++++|.+
T Consensus 8 g~NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~ 83 (329)
T TIGR03569 8 GVNHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDL----VSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKE 83 (329)
T ss_pred CCCccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHh----hCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHH
Confidence 33443 5899999999999988774 444433321 1111111 11110 0 0113478999999999
Q ss_pred HHHHcCCEEEEee
Q 008821 272 FAKMRGINVMAEV 284 (552)
Q Consensus 272 yA~~rgI~VIPEi 284 (552)
||++.||.++-+.
T Consensus 84 ~~~~~Gi~~~stp 96 (329)
T TIGR03569 84 YCESKGIEFLSTP 96 (329)
T ss_pred HHHHhCCcEEEEe
Confidence 9999999998764
No 219
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=20.06 E-value=8.2e+02 Score=27.81 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred cc-eecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeecCCccccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHcC
Q 008821 200 GL-LIDTSRH-YLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVEDAHEIVSFAKMRG 277 (552)
Q Consensus 200 G~-mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~~rle~~~~P~l~~Ga~~~~~~YT~~ei~elv~yA~~rg 277 (552)
|. ||-++|. +-+-+.+++.++.+..++++.|..= | |-=|-.....|.+|++++|
T Consensus 138 Gsd~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviI-------------------G-----GddS~~~A~~Lae~~~~~g 193 (550)
T cd00765 138 GFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVI-------------------G-----GDDSNTNAALLAENFRSKG 193 (550)
T ss_pred ChhhhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEe-------------------C-----CchHHHHHHHHHHHHHhcC
Confidence 66 8999995 4456789999999999999998862 1 1115567778999999998
Q ss_pred --CEEEEeecCCCccchHhhhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH-hhCCC-CeeeeCCCCcCC
Q 008821 278 --INVMAEVDVPGHAESWGAGYPNLWPSPSCREPLDVSKNFTFEVISGILSDLR-KIFPF-ELFHLGGDEVNT 346 (552)
Q Consensus 278 --I~VIPEiD~PGH~~a~~~~yp~l~~~~~~~~~l~~~~~~t~~fl~~vl~E~~-~lF~~-~~iHiGgDEv~~ 346 (552)
|.|| =.|.=- .-+|... ....++.-+.+.+++.++++++. +.-.+ +++|+ =|+.+
T Consensus 194 ~~i~VI---GVPKTI------DNDl~~t---~id~s~GFdTA~k~~a~~I~ni~~Da~s~~~~~~~--VEvMG 252 (550)
T cd00765 194 LKTRVI---GVPKTI------DGDLKNK---EIETSFGFDTATKIYSELIGNVMRDARSTGKYWHF--VKLMG 252 (550)
T ss_pred CCceEE---EEeeee------cCCCCCC---CCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCcEEE--EEeCC
Confidence 5554 233311 1122100 01346778889999999999997 44433 46663 34443
Done!