BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008822
         (552 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q92546|RGP1_HUMAN Retrograde Golgi transport protein RGP1 homolog OS=Homo sapiens
           GN=RGP1 PE=2 SV=1
          Length = 391

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)

Query: 395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNS---PTITKI- 450
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR +   P+++ + 
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEYQR--RRGAGGVPSVSHVT 285

Query: 451 QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT-------------P 497
            + H E      +TSF   IP+     F T  VS++W L FEF+T+             P
Sbjct: 286 HARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQP 345

Query: 498 KHVQWTRYEH-PLLIEGRDKSEWVLPITV 525
           +   WT  E  P+     D   W LPI V
Sbjct: 346 EPTTWTGPEQVPV-----DTFSWDLPIKV 369


>sp|Q8BHT7|RGP1_MOUSE Retrograde Golgi transport protein RGP1 homolog OS=Mus musculus
           GN=Rgp1 PE=2 SV=1
          Length = 391

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 29/150 (19%)

Query: 395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN----SPTITKI 450
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR     +P+++ +
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEY---QRRRGTGVAPSVSHV 284

Query: 451 -QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT------------- 496
             + H E      +TSF   IP+     F T  VS++W L FEF+T+             
Sbjct: 285 THARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPLEQ 344

Query: 497 PKHVQWTRYEH-PLLIEGRDKSEWVLPITV 525
           P+   WT  E  P+     D   W LPI V
Sbjct: 345 PEPATWTGPEQVPV-----DTFSWDLPIKV 369


>sp|Q2T9P3|RGP1_BOVIN Retrograde Golgi transport protein RGP1 homolog OS=Bos taurus
           GN=RGP1 PE=2 SV=1
          Length = 394

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 29/152 (19%)

Query: 395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN----SPTITKI 450
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR     +P+++ I
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQYSVSLQTEERVQPEY---QRRRGAGGAPSVSHI 284

Query: 451 -QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT------------- 496
             + H E      +TSF   IP+     F T  VS++W L FEF+T+             
Sbjct: 285 THARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQ 344

Query: 497 PKHVQWTRYEH-PLLIEGRDKSEWVLPITVHA 527
           P+   WT  E  P+     D   W LPI   A
Sbjct: 345 PEPATWTGPEQVPV-----DTFSWDLPIKPEA 371


>sp|A2QY22|CHL1_ASPNC ATP-dependent RNA helicase chl1 OS=Aspergillus niger (strain CBS
           513.88 / FGSC A1513) GN=chl1 PE=3 SV=1
          Length = 874

 Score = 35.8 bits (81), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 33/163 (20%)

Query: 171 WLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIV----PATTIQMD 226
           W++      +RES R +T+    L  ++  T+K      EE Q   +     P    +  
Sbjct: 81  WML---DFARRESSRMMTEKRKELEERLEKTRK-----EEEQQRIALENPEGPRKKQKYS 132

Query: 227 IYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSST 286
           I   E  G SE   A D YD   E +   RDE++  S  +PS   LL+ F      Q ST
Sbjct: 133 IPLTESGGLSEDQFALDDYDSENEEHSKPRDELAHTSELSPSTLELLERFKG----QIST 188

Query: 287 ARSSTKD-----------------IPAFEGELMRLSSNVALPQ 312
           A+  + D                 +  F GEL R+    ++P+
Sbjct: 189 AKPGSDDADNDEVKIFYCSRTHSQLTQFAGELRRVKMPWSIPK 231


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,322,054
Number of Sequences: 539616
Number of extensions: 9226419
Number of successful extensions: 92443
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 68103
Number of HSP's gapped (non-prelim): 17135
length of query: 552
length of database: 191,569,459
effective HSP length: 123
effective length of query: 429
effective length of database: 125,196,691
effective search space: 53709380439
effective search space used: 53709380439
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)