Query 008822
Match_columns 552
No_of_seqs 128 out of 148
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r51_A Vacuolar protein sortin 98.6 2.2E-05 7.4E-10 81.1 27.9 98 49-168 42-139 (340)
2 2fau_A Vacuolar protein sortin 98.5 4.7E-05 1.6E-09 78.7 26.7 98 49-168 42-139 (341)
3 1g4m_A Beta-arrestin1; sensory 96.2 0.03 1E-06 58.7 11.8 40 41-89 198-237 (393)
4 1suj_A CONE arrestin; sensory 96.1 0.018 6.3E-07 60.6 9.7 27 41-67 195-221 (392)
5 1suj_A CONE arrestin; sensory 93.6 8.5 0.00029 40.5 25.4 135 380-533 189-356 (392)
6 2r51_A Vacuolar protein sortin 91.3 1.9 6.5E-05 44.6 12.6 100 41-168 177-281 (340)
7 2p9r_A Alpha-2-M, alpha-2-macr 90.1 0.19 6.6E-06 41.9 3.4 26 40-65 2-27 (102)
8 3isy_A Bsupi, intracellular pr 88.4 1.6 5.6E-05 39.0 8.2 87 53-172 16-106 (120)
9 3ugu_A S-arrestin; arrestin fo 86.2 0.79 2.7E-05 48.2 5.6 28 41-68 214-241 (380)
10 1g4m_A Beta-arrestin1; sensory 83.9 27 0.00092 36.5 15.9 133 381-532 193-358 (393)
11 2fau_A Vacuolar protein sortin 80.6 7.3 0.00025 40.3 10.0 99 41-168 177-281 (341)
12 3n44_F E1 envelope glycoprotei 73.3 0.97 3.3E-05 47.8 1.1 53 8-64 2-56 (473)
13 3vmn_A Dextranase; TIM barrel, 69.3 2.2 7.7E-05 47.6 2.8 30 40-69 7-36 (643)
14 4fxk_A Complement C4 beta chai 64.1 4.2 0.00014 43.4 3.7 27 39-65 119-145 (656)
15 2hr0_A Complement C3 beta chai 59.8 4.9 0.00017 43.5 3.2 27 39-65 105-131 (645)
16 3hrz_A Cobra venom factor; ser 54.0 6.2 0.00021 43.3 2.8 29 38-66 102-130 (627)
17 3nwm_A Peptide/beta-2microglob 52.1 8.4 0.00029 40.8 3.4 50 7-67 8-59 (443)
18 2aan_A Auracyanin A; cupredoxi 50.3 8 0.00027 33.7 2.4 19 123-141 94-112 (139)
19 2i9o_A MHB8A peptide; beta-hai 48.4 6.4 0.00022 28.2 1.2 10 16-25 13-22 (37)
20 2pn5_A TEP1R, thioester-contai 48.3 7.1 0.00024 46.0 2.3 31 31-61 91-121 (1325)
21 3rfr_A PMOB; membrane, oxidore 45.4 36 0.0012 36.2 6.8 85 40-143 282-367 (419)
22 4acq_A Alpha-2-macroglobulin; 39.3 15 0.0005 44.4 3.1 28 36-63 100-127 (1451)
23 3cu7_A Complement C5; Mg domai 36.0 17 0.00057 44.2 2.9 29 37-65 121-149 (1676)
24 2b39_A C3; thioester, immune d 36.0 20 0.00067 43.6 3.5 27 39-65 126-152 (1661)
25 3prx_B Cobra venom factor; imm 33.4 22 0.00076 43.5 3.4 26 38-63 124-149 (1642)
26 1yew_A Particulate methane mon 27.7 2.6E+02 0.009 29.5 9.7 86 40-143 248-335 (382)
27 2bm3_A Type 2 cohesin, scaffol 24.8 55 0.0019 30.9 3.7 79 40-133 7-91 (166)
28 3ugu_A S-arrestin; arrestin fo 20.1 2.2E+02 0.0075 30.0 7.5 49 381-432 209-257 (380)
No 1
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=98.63 E-value=2.2e-05 Score=81.14 Aligned_cols=98 Identities=17% Similarity=0.272 Sum_probs=71.1
Q ss_pred eeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccCcceeeecc
Q 008822 49 NVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQ 128 (552)
Q Consensus 49 ~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~~~~Lvsd~ 128 (552)
-+|.|||.|.=.|.|...-..+ .+-...+.+++.|...+ .|- +-.+.-|..... -|+..-
T Consensus 42 pvY~~GE~VsG~V~I~~~~~~k------~l~h~GIki~~~G~~e~--~~~-----------~~~~~~f~~~~~-eL~~pG 101 (340)
T 2r51_A 42 FLFYDGETVSGKVSLSLKNPNK------RLEHQGIKIEFIGQIEL--YYD-----------RGNHHEFVSLVK-DLARPG 101 (340)
T ss_dssp EEEETBCCEEEEEEEEESSTTS------CEEESCEEEEEEEEEEE--GGG-----------TTCCEEEEEEEE-EEECSE
T ss_pred CcCCCCCEEEEEEEEEECCCCC------eeEEEEEEEEEEEEEEE--Eec-----------CCCcEEEEEEEE-EecCCC
Confidence 4899999999998888771011 35667888888886554 331 112333433333 244444
Q ss_pred ccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEEEEEEe
Q 008822 129 IVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLS 168 (552)
Q Consensus 129 ~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i~at~~ 168 (552)
.|.+|.+ |-+.|.||..+|+||.|..++.-|+|++++.
T Consensus 102 ~L~~G~~--fpF~F~lp~~l~eSy~G~~g~IrY~vkv~i~ 139 (340)
T 2r51_A 102 EITQSQA--FDFEFTHVEKPYESYTGQNVKLRYFLRATIS 139 (340)
T ss_dssp EECSCEE--EEEEECSBCCCSCCEECSSEEEEEEEEEEEC
T ss_pred ccCCCcE--EeeEeCCCCCCCcCeEeeeEEEEEEEEEEEE
Confidence 6788865 9999999999999999999999999999996
No 2
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=98.51 E-value=4.7e-05 Score=78.72 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=71.2
Q ss_pred eeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccCcceeeecc
Q 008822 49 NVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQ 128 (552)
Q Consensus 49 ~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~~~~Lvsd~ 128 (552)
.+|.|||.|.-.|.|....... .+-...+..+++|...+- | .+. ..+-|..... -|+..-
T Consensus 42 ~vY~~GE~VsG~V~I~~~~~gk------~l~h~GIki~~~G~~e~~--~----------~~~-~~~~fls~~~-eL~~~G 101 (341)
T 2fau_A 42 YLFYDGESVSGKVNLAFKQPGK------RLEHQGIRIEFVGQIELF--N----------DKS-NTHEFVNLVK-ELALPG 101 (341)
T ss_dssp EEECTTCCEEEEEEEEESSSSC------CEEESCEEEEEEEEEEEC--S----------TTC-CEEEEEEEEE-EEECSE
T ss_pred CcCCCCCEEEEEEEEEECCCCC------eeeEEEEEEEEEEEEEEE--e----------cCC-CcEEEEEEEE-EEcCCC
Confidence 5999999999998888763111 255577888888876652 2 011 2233333333 355445
Q ss_pred ccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEEEEEEe
Q 008822 129 IVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLS 168 (552)
Q Consensus 129 ~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i~at~~ 168 (552)
.|.+| +.|-+.|.+|..+|+||.|..++.-|+|++++.
T Consensus 102 ~L~~g--~~fpF~F~~~~~~~eSy~G~~~~IrY~vrv~i~ 139 (341)
T 2fau_A 102 ELTQS--RSYDFEFMQVEKPYESYIGANVRLRYFLKVTIV 139 (341)
T ss_dssp EECSC--EEEEEEECSCCCCSCCEECSSEEEEEEEEEEEC
T ss_pred ccCCC--cEEeeEeCCCCCCCcceEeeEEEEEEEEEEEEE
Confidence 67888 889999999888999999999999999999996
No 3
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=96.19 E-value=0.03 Score=58.66 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=32.0
Q ss_pred eeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEE
Q 008822 41 TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKG 89 (552)
Q Consensus 41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g 89 (552)
.|++++||..|.|||.|.+.|+|.|.++ .-++.+...+.-
T Consensus 198 ~l~~sldk~~Y~pGE~I~v~v~I~N~S~---------k~Vk~Ikv~L~Q 237 (393)
T 1g4m_A 198 HLEASLDKEIYYHGEPISVNVHVTNNTN---------KTVKKIKISVRQ 237 (393)
T ss_dssp EEEEEESCSEEETTCCEEEEEEEEECSS---------CCEEEEEEEEEE
T ss_pred EEEEEECCceEcCCCEEEEEEEEEcCCC---------CEEeEEEEEEEE
Confidence 5889999999999999999999999982 335555555443
No 4
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=96.09 E-value=0.018 Score=60.55 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=25.6
Q ss_pred eeeeeecceeeeCCCeEEEEEEEecCC
Q 008822 41 TLKLQTDKNVYTPGDTVFVTVEICNPL 67 (552)
Q Consensus 41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~ 67 (552)
.|++++||..|.|||.|.+.|+|.|.+
T Consensus 195 ~l~vsLdK~~Y~pGE~I~V~v~I~N~S 221 (392)
T 1suj_A 195 HLEASLDKEIYYHGEPINVNVKINNTT 221 (392)
T ss_dssp EEEEEESCSEEETTCCEEEEEEEEECS
T ss_pred EEEEEeCCccccCCCEEEEEEEEECCC
Confidence 478999999999999999999999998
No 5
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=93.57 E-value=8.5 Score=40.53 Aligned_cols=135 Identities=16% Similarity=0.239 Sum_probs=80.0
Q ss_pred EeCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEee--eee
Q 008822 380 RMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDH--HEV 457 (552)
Q Consensus 380 ~rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S~~s~~~~rkvhae~--hE~ 457 (552)
-..|..-.+++|. |..|..||+|...++.++ ++...+-.+.+.|.-.=.+-- |. ....+++.++. -|-
T Consensus 189 ~ssGpl~l~vsLd--K~~Y~pGE~I~V~v~I~N-~Ssk~Vk~Ikv~L~Q~~~v~l-~s------~~~~k~~Va~~e~~e~ 258 (392)
T 1suj_A 189 LSDRPLHLEASLD--KEIYYHGEPINVNVKINN-TTGKIVKKIKIIVEQVTDVVL-FS------LDKYVKTVCAEETNDT 258 (392)
T ss_dssp ETTEEEEEEEEES--CSEEETTCCEEEEEEEEE-CSSSEEEEEEEEEEEEEEECS-SS------CCEEEEEEEEEECCCC
T ss_pred ecCCCEEEEEEeC--CccccCCCEEEEEEEEEC-CCCCcEeEEEEEEEEEEEEEE-ec------CCcEEEEEEEEecCCC
Confidence 3467777888884 789999999999999985 566677778887776555420 10 01123333322 111
Q ss_pred ec-ccc-eeeEEecCCCCC-----------------CCce-EeCc-----------eeEEEEEEEEEEecCCCccccccC
Q 008822 458 VA-DLV-QTSFLFSIPMDG-----------------PMSF-STPY-----------VSVQWALRFEFLTTPKHVQWTRYE 506 (552)
Q Consensus 458 cl-d~~-~T~F~L~IP~~a-----------------TPqF-~Td~-----------VsLkW~LRFEFVts~~~~~wqa~e 506 (552)
+. +.. +..|.|. |+-+ ...+ .+.+ +.+..+|+.+.+++-.+ ...
T Consensus 259 V~pgst~~k~~~L~-P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~~~~gI~VsY~vkVkl~v~~gg----~~~ 333 (392)
T 1suj_A 259 VAANSTLSKTFSVT-PMLANNREKRGLALDGKLKHEDTNLASTTVIRPGMDKEVLGILVSYKVKVHLVVARGG----ILG 333 (392)
T ss_dssp BCTTEEEEEEEEEC-CCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEEETTS----STT
T ss_pred cCCCCEEEEEEEEe-ccccCCCccceeeecccccCCCccccccccccCCCCccccceEEEEEEEEEEEEcCCc----ccc
Confidence 11 111 1244442 3332 1112 1122 79999999999996411 111
Q ss_pred CCCCcCCceEEEEEeeeEEeCCCCCCC
Q 008822 507 HPLLIEGRDKSEWVLPITVHAPPSGAP 533 (552)
Q Consensus 507 ~~~~l~e~EtF~W~LPItVlPt~P~~~ 533 (552)
+ + -.......|||++..+.|...
T Consensus 334 ~---~-~s~d~~velPf~L~~p~P~~~ 356 (392)
T 1suj_A 334 D---L-TSSDVAVELPLTLMHPKPSDD 356 (392)
T ss_dssp C---C-CCEEEEEEEEEEEECCCCCCC
T ss_pred c---c-cccCeeEEECeEEeCCCCCCc
Confidence 1 2 235778999999998888764
No 6
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=91.28 E-value=1.9 Score=44.56 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=59.7
Q ss_pred eeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccC
Q 008822 41 TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS 120 (552)
Q Consensus 41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~ 120 (552)
.+..+++|..|.+||+|...|.|.+.. .-++.+..+|.-.|... ++. ....+..
T Consensus 177 ~Ie~~~~ks~y~lgd~I~G~I~f~~s~----------i~Ik~iel~LiR~Et~~-------~~~---------~~~~e~~ 230 (340)
T 2r51_A 177 HIEFEYNKSKYHLKDVIVGKIYFLLVR----------IKIKHMEIDIIKRETTG-------TGP---------NVYHEND 230 (340)
T ss_dssp EEEEEESCSEEETTCEEEEEEEEEEEC----------SCEEEEEEEEEEEEEEE-------ETT---------EEEEEEE
T ss_pred EEEEEECcccccCCCeEEEEEEEEEee----------ceeEEEEEEEEEEEEEe-------cCC---------CeeEEEE
Confidence 567788999999999999888876332 34555666654444331 111 1111111
Q ss_pred c--ceeeeccccCCCCeeEEEEEEecCC-CCCCCCc--cceEEEEEEEEEEEe
Q 008822 121 A--SKLISNQIVSSDATKSYVIRTELPS-IIPPSYR--GTTIRYLYYVKSTLS 168 (552)
Q Consensus 121 ~--~~Lvsd~~l~~g~tk~y~vr~~LP~-~lPPSyR--G~~vRy~Y~i~at~~ 168 (552)
+ -+=+.|--...|+ +.-+|+.||. .|+|||+ -..++--|+|.-++.
T Consensus 231 ~i~k~eImdG~p~rge--~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvl~ 281 (340)
T 2r51_A 231 TIAKYEIMDGAPVRGE--SIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLI 281 (340)
T ss_dssp EEEEEEEEESCCCTTC--EEEEEEEGGGSCCCCCEEEETTTEEEEEEEEEEEE
T ss_pred EEEEEEEecCCccCCC--EEEEEEECCCCCCCCCccccCCeEEEEEEEEEEEE
Confidence 1 0111122224455 4445899996 6999999 777888888855554
No 7
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=90.15 E-value=0.19 Score=41.94 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=21.8
Q ss_pred CeeeeeecceeeeCCCeEEEEEEEec
Q 008822 40 PTLKLQTDKNVYTPGDTVFVTVEICN 65 (552)
Q Consensus 40 ~~l~l~~dk~vY~PGd~V~~~Iei~~ 65 (552)
+.+-+++||.+|||||.|.+.+=+-+
T Consensus 2 ~~~fi~tDr~iYrPGetV~~~~~~~~ 27 (102)
T 2p9r_A 2 SLVFVQTDKSIYKPGQTVKFRVVSMD 27 (102)
T ss_dssp CEEEEEESCSEECTTCEEEEEEEEEC
T ss_pred ceEEEECCCcccCCCCEEEEEEEEEC
Confidence 46789999999999999998876543
No 8
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=88.41 E-value=1.6 Score=38.99 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=57.0
Q ss_pred CCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEE--e--ccCcceeeecc
Q 008822 53 PGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAF--L--DISASKLISNQ 128 (552)
Q Consensus 53 PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if--~--~~~~~~Lvsd~ 128 (552)
+||.|.+++.++|+....-. -..-.+.-|++.- ++.-|+.|+ + .++++ -+.+.
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~----l~f~Sgq~~Df~v------------------~d~~G~~VwrwS~~~~FtQ-a~~~~ 72 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIE----FQFSTGQKFELVV------------------YDSEHKERYRYSKEKMFTQ-AFQNL 72 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEE----EEESSSCCEEEEE------------------ECTTCCEEEETTTTCCCCC-CCEEE
T ss_pred CCCeEEEEEEEEcCCCCcEE----EEeCCCCEEEEEE------------------ECCCCCEEEEccccchhhh-hhceE
Confidence 99999999999999943210 0001122222222 123467788 4 78887 67799
Q ss_pred ccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEEEEEEeeeeE
Q 008822 129 IVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWL 172 (552)
Q Consensus 129 ~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i~at~~g~~~ 172 (552)
.|.||++++|. +++|..++| | -|.|++++.|+..
T Consensus 73 tl~pGE~~~f~--~~w~~~~~p---G-----~Ytl~a~l~~~~~ 106 (120)
T 3isy_A 73 TLESGETYDFS--DVWKEVPEP---G-----TYEVKVTFKGRAE 106 (120)
T ss_dssp EECTTCEEEEE--EEESSCCCS---E-----EEEEEEEECCEET
T ss_pred EECCCCEEEEE--EEeCCCCCC---c-----cEEEEEEEEeeec
Confidence 99999998876 556655555 3 4888999998743
No 9
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=86.16 E-value=0.79 Score=48.22 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=26.0
Q ss_pred eeeeeecceeeeCCCeEEEEEEEecCCC
Q 008822 41 TLKLQTDKNVYTPGDTVFVTVEICNPLS 68 (552)
Q Consensus 41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~ 68 (552)
.|++++||+.|.|||.|.+.|+|.|-++
T Consensus 214 ~L~vsLdK~~Y~pGE~I~V~v~I~N~Ss 241 (380)
T 3ugu_A 214 RLAVSLSKEIYYHGEPIPVTVAVTNSTE 241 (380)
T ss_dssp EEEEEESCSEEETTCCEEEEEEEEECSS
T ss_pred EEEEEeCCccCcCCCEEEEEEEEEcCCC
Confidence 4789999999999999999999999993
No 10
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=83.85 E-value=27 Score=36.45 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=78.7
Q ss_pred eCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeee--eee
Q 008822 381 MDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHH--EVV 458 (552)
Q Consensus 381 rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S~~s~~~~rkvhae~h--E~c 458 (552)
+.|..-+.++|. |..|..||.|...++.++ .+...+..+.+.|.-...+-- |.. .. .+++.++.. +-.
T Consensus 193 ~sG~l~l~~sld--k~~Y~pGE~I~v~v~I~N-~S~k~Vk~Ikv~L~Q~~~~~~-~s~-----~~-~k~~Va~~e~~~~V 262 (393)
T 1g4m_A 193 SDKPLHLEASLD--KEIYYHGEPISVNVHVTN-NTNKTVKKIKISVRQYADICL-FNT-----AQ-YKCPVAMEEADDTV 262 (393)
T ss_dssp SSSCEEEEEEES--CSEEETTCCEEEEEEEEE-CSSCCEEEEEEEEEEEEEECS-SBC-----EE-EEEEEEEEEECCCB
T ss_pred cCCCEEEEEEEC--CceEcCCCEEEEEEEEEc-CCCCEEeEEEEEEEEEEEEEE-ecC-----Cc-eEEEEEEEecCCcC
Confidence 466777778884 789999999999999984 567777888888877653210 100 01 112222222 211
Q ss_pred c-ccc-eeeEEecCCCCCC-----------------Cc-eEeCcee-----------EEEEEEEEEEecCCCccccccCC
Q 008822 459 A-DLV-QTSFLFSIPMDGP-----------------MS-FSTPYVS-----------VQWALRFEFLTTPKHVQWTRYEH 507 (552)
Q Consensus 459 l-d~~-~T~F~L~IP~~aT-----------------Pq-F~Td~Vs-----------LkW~LRFEFVts~~~~~wqa~e~ 507 (552)
. +.. +..|.| +|.-++ .. -.+.+++ +...|+++..+.. +.....
T Consensus 263 ~~gs~~~~~~~L-~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~~~~gi~VsY~vkV~l~v~~-gg~~~~--- 337 (393)
T 1g4m_A 263 APSSTFCKVYTL-TPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSR-GGLLGD--- 337 (393)
T ss_dssp CTTEEEEEEEEE-CCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECC-C--------
T ss_pred CCCCEEeeEEEE-cCCCCCcccccceeeccccccCCcccccceeecCCCCccccceEEEEEEEEEEEecC-CCcccc---
Confidence 1 111 224555 555442 12 3445777 9999999988854 111111
Q ss_pred CCCcCCceEEEEEeeeEEeCCCCCC
Q 008822 508 PLLIEGRDKSEWVLPITVHAPPSGA 532 (552)
Q Consensus 508 ~~~l~e~EtF~W~LPItVlPt~P~~ 532 (552)
+ --......|||+|..+.|..
T Consensus 338 ---~-~~~~l~~~lPi~i~~p~p~~ 358 (393)
T 1g4m_A 338 ---L-ASSDVAVELPFTLMHPKPKE 358 (393)
T ss_dssp -------CEEEEEEEEEEECCCCC-
T ss_pred ---c-ccccEEEEeCEEEecCCCCc
Confidence 1 13577899999999877765
No 11
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=80.56 E-value=7.3 Score=40.27 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=60.3
Q ss_pred eeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccC
Q 008822 41 TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS 120 (552)
Q Consensus 41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~ 120 (552)
.++..++|..|.+||+|.-.|.|.... .-++.+..++.-.|.. .++.+ + .. +.
T Consensus 177 ~ieF~~~ks~y~l~d~I~G~I~f~~s~----------i~Ik~iel~LiR~Et~-------~~~~~---~------~~-e~ 229 (341)
T 2fau_A 177 HIEFEYNKSKYHLKDVIVGKIYFLLVR----------IKIQHMELQLIKKEIT-------GIGPS---T------TT-ET 229 (341)
T ss_dssp EEEEEESCSEEETTCEEEEEEEEEEEC----------SCEEEEEEEEEEEEEE-------SCGGG---C------EE-EE
T ss_pred EEEEEEccccccCCCeEEEEEEEEEec----------cceEEEEEEEEEEEEE-------cCCCC---e------ee-EE
Confidence 567889999999999999888776422 3467777776655543 22211 1 11 11
Q ss_pred cceeeeccccCCCC---eeEEEEEEecCC-CCCCCCc--cceEEEEEEEEEEEe
Q 008822 121 ASKLISNQIVSSDA---TKSYVIRTELPS-IIPPSYR--GTTIRYLYYVKSTLS 168 (552)
Q Consensus 121 ~~~Lvsd~~l~~g~---tk~y~vr~~LP~-~lPPSyR--G~~vRy~Y~i~at~~ 168 (552)
+ .+.+.-+..|+ -.+.-+|+.||. .|+|||+ -..+.-=|+|.-++.
T Consensus 230 ~--~i~k~eImDG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvlv 281 (341)
T 2fau_A 230 E--TIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLV 281 (341)
T ss_dssp E--EEEEEECCCC------CEEEEEESTTTCCCCCEEEEETTEEEEEEEEEEEE
T ss_pred E--EEEEEEEeCCCccCCCEEEEEEEcCCCCCCCcchhcCCeEEEEEEEEEEEE
Confidence 1 12222222222 235557999997 6999999 777777777755543
No 12
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=73.30 E-value=0.97 Score=47.80 Aligned_cols=53 Identities=38% Similarity=0.750 Sum_probs=17.3
Q ss_pred eccCCCCCCCCCCCCCCCcchh--cccCCCCCCCCeeeeeecceeeeCCCeEEEEEEEe
Q 008822 8 LFGGGGGGGGGGGGGGSKSNKV--ANNSKNDGVLPTLKLQTDKNVYTPGDTVFVTVEIC 64 (552)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~~dk~vY~PGd~V~~~Iei~ 64 (552)
++|+||+||||.||||++-..- .-..-|+.-.| -|+-.+|.=|+| ....|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~AYEHatt~PN~vg~P-YkalV~R~GYaP---L~L~i~v~ 56 (473)
T 3n44_F 2 LYGGGGSGGGGSGGGGSGGGGYEHVTVIPNTVGVP-YKTLVNRPGYSP---MVLEMELL 56 (473)
T ss_dssp ---------------------CEEEEEEESCTTCC-EEEEECCTTBCC---EEEEEEEE
T ss_pred cccCCCCCCCCCCCCCCccceeeeeeecCCCCCCc-hhhhhccCCCCc---eeEEEEEE
Confidence 5789999988888888864432 22345555566 677676666665 44444433
No 13
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A*
Probab=69.26 E-value=2.2 Score=47.57 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=26.2
Q ss_pred CeeeeeecceeeeCCCeEEEEEEEecCCCC
Q 008822 40 PTLKLQTDKNVYTPGDTVFVTVEICNPLSS 69 (552)
Q Consensus 40 ~~l~l~~dk~vY~PGd~V~~~Iei~~~~~~ 69 (552)
+-.++.+||+.|+|||.|+++|++.|....
T Consensus 7 ~i~~v~tDKA~Y~PGe~V~l~~~l~n~t~~ 36 (643)
T 3vmn_A 7 NMINLTTDKAVYQAGEAVHLNLTLNNTTSL 36 (643)
T ss_dssp CSCCCEESCSSBCTTSCEEEECEEECCSSS
T ss_pred cceeeeccccccCCCCeEEEEEEEecccCc
Confidence 345678999999999999999999998844
No 14
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=64.12 E-value=4.2 Score=43.42 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCeeeeeecceeeeCCCeEEEEEEEec
Q 008822 39 LPTLKLQTDKNVYTPGDTVFVTVEICN 65 (552)
Q Consensus 39 ~~~l~l~~dk~vY~PGd~V~~~Iei~~ 65 (552)
...|=+|+||.+|||||.|...|=.-+
T Consensus 119 ~~~vFIqTDr~iYrPGqtV~~r~i~~d 145 (656)
T 4fxk_A 119 RGHLFLQTDQPIYNPGQRVRYRVFALD 145 (656)
T ss_dssp CSEEEEEESCSEECTTCEEEEEEEEEC
T ss_pred CccEEEECCCCCcCCCCEEEEEEEEEC
Confidence 456889999999999999998875444
No 15
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=59.77 E-value=4.9 Score=43.54 Aligned_cols=27 Identities=44% Similarity=0.600 Sum_probs=22.7
Q ss_pred CCeeeeeecceeeeCCCeEEEEEEEec
Q 008822 39 LPTLKLQTDKNVYTPGDTVFVTVEICN 65 (552)
Q Consensus 39 ~~~l~l~~dk~vY~PGd~V~~~Iei~~ 65 (552)
...+-+++||.+|||||.|...+=.-+
T Consensus 105 ~~~~fi~TDR~iYrPGqtV~~r~i~~d 131 (645)
T 2hr0_A 105 SGYLFIQTDKTIYTPGSTVLYRIFTVN 131 (645)
T ss_dssp CCEEEEEESCSBCCTTSEEEEEEEEEC
T ss_pred CccEEEEcCCccCCCCCEEEEEEEEEC
Confidence 566889999999999999998765554
No 16
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=53.95 E-value=6.2 Score=43.31 Aligned_cols=29 Identities=38% Similarity=0.481 Sum_probs=24.3
Q ss_pred CCCeeeeeecceeeeCCCeEEEEEEEecC
Q 008822 38 VLPTLKLQTDKNVYTPGDTVFVTVEICNP 66 (552)
Q Consensus 38 ~~~~l~l~~dk~vY~PGd~V~~~Iei~~~ 66 (552)
-...+=+++||.+|||||.|...+=.-+.
T Consensus 102 ~~~~~fi~TDr~iYrPGqtV~~r~i~~d~ 130 (627)
T 3hrz_A 102 QSSFLFIQTDKGIYTPGSPVLYRVFSMDH 130 (627)
T ss_dssp CCSCEEEEESCSEECTTCEECEEEEESCC
T ss_pred CCCcEEEECCCCccCCCCEEEEEEEEECC
Confidence 35788999999999999999988765543
No 17
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}
Probab=52.06 E-value=8.4 Score=40.77 Aligned_cols=50 Identities=32% Similarity=0.616 Sum_probs=19.2
Q ss_pred eeccCCCCCCCCCCCCCCCcchhcccCCCCCCCCeeeeeecceeeeCCC--eEEEEEEEecCC
Q 008822 7 SLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGD--TVFVTVEICNPL 67 (552)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~dk~vY~PGd--~V~~~Iei~~~~ 67 (552)
-|+|+|.+||||.|||.+.- ...|++.+...+.+ ..|. .+.|.|.=-.|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~i----------~~~P~V~v~~~~~~-~~~~~~tL~C~v~gFyP~ 59 (443)
T 3nwm_A 8 VFLGGGASGGGGSGGGGSMI----------QKTPQIQVYSRHPP-ENGKPNILNCYVTQFHPP 59 (443)
T ss_dssp SCC------------CCCCC----------CBCCEEEEEESSCC-CTTSCEEEEEEEEEEBSS
T ss_pred eEeccccCCCCCCCCCCcce----------eeCCEEEEEcCCcc-cCCCCEEEEEEEcCeECC
Confidence 47787777666666654321 13588888664443 2344 344555433333
No 18
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=50.26 E-value=8 Score=33.68 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=12.6
Q ss_pred eeeeccccCCCCeeEEEEE
Q 008822 123 KLISNQIVSSDATKSYVIR 141 (552)
Q Consensus 123 ~Lvsd~~l~~g~tk~y~vr 141 (552)
+|.-...|.||++.++.+.
T Consensus 94 ~~~~t~~l~pGet~~v~f~ 112 (139)
T 2aan_A 94 IIAESPLANGNETVEVTFT 112 (139)
T ss_dssp EEEECCCBCTTCEEEEEEE
T ss_pred ccccccccCCCCEEEEEEE
Confidence 3444556799988776654
No 19
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=48.41 E-value=6.4 Score=28.16 Aligned_cols=10 Identities=90% Similarity=1.817 Sum_probs=5.0
Q ss_pred CCCCCCCCCC
Q 008822 16 GGGGGGGGSK 25 (552)
Q Consensus 16 ~~~~~~~~~~ 25 (552)
|||||||||.
T Consensus 13 ggggggggsa 22 (37)
T 2i9o_A 13 GGGGGGGGSA 22 (37)
T ss_dssp CSCCCCSCSS
T ss_pred cCCCCCcchH
Confidence 4445555554
No 20
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=48.26 E-value=7.1 Score=46.03 Aligned_cols=31 Identities=32% Similarity=0.287 Sum_probs=22.8
Q ss_pred ccCCCCCCCCeeeeeecceeeeCCCeEEEEE
Q 008822 31 NNSKNDGVLPTLKLQTDKNVYTPGDTVFVTV 61 (552)
Q Consensus 31 ~~~~~~~~~~~l~l~~dk~vY~PGd~V~~~I 61 (552)
+...-+.-...+-+++||.+|+|||+|...+
T Consensus 91 ~~v~~~~~~~~~fi~TDr~iYrPGqtV~~r~ 121 (1325)
T 2pn5_A 91 AELVYLSKSISGLIQVDKPVFKPGDTVNFRV 121 (1325)
T ss_dssp EEEEECSCSEEEEEEESCSEECTTCEEEEEE
T ss_pred EEEEEEcccccEEEecCCCccCCCCEEEEEE
Confidence 3333334456788999999999999997443
No 21
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=45.45 E-value=36 Score=36.20 Aligned_cols=85 Identities=18% Similarity=0.395 Sum_probs=49.4
Q ss_pred Ceeeeeecceeee-CCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEec
Q 008822 40 PTLKLQTDKNVYT-PGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLD 118 (552)
Q Consensus 40 ~~l~l~~dk~vY~-PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~ 118 (552)
..|++...++.|+ ||..++.++++.|-.+.. +.+.+ |.--+.+.+|+..+...+--|.. +..+
T Consensus 282 ~~V~~~v~~A~Y~vpgR~l~~~~~VtN~g~~p-------vrlge--F~tA~vrFlnp~v~~~~~~~p~~-------l~a~ 345 (419)
T 3rfr_A 282 EQVTTELNGGVYKVPGRELTINVKVKNGTSQP-------VRLGE--YTAAGLRFLNPTVFTQKPDFPDY-------LLAD 345 (419)
T ss_dssp CCCEEEEEEEEEESSSSEEEEEEEEECCSSSC-------BEEEE--EECSSCEEECTTTCSSCCCCCTT-------TEES
T ss_pred CceEEEEeceEEecCCcEEEEEEEEecCCCCc-------eEEee--EEEccEEEeCcccccCCCCCchh-------hhhc
Confidence 3577777777775 999999999999988432 33333 22334445565542222111111 1111
Q ss_pred cCcceeeeccccCCCCeeEEEEEEe
Q 008822 119 ISASKLISNQIVSSDATKSYVIRTE 143 (552)
Q Consensus 119 ~~~~~Lvsd~~l~~g~tk~y~vr~~ 143 (552)
.- |-+|-.|.|||||+..|..+
T Consensus 346 ~G---L~s~~pI~PGETrt~~V~a~ 367 (419)
T 3rfr_A 346 RG---LSNDDVIAPGESKEIVVKIQ 367 (419)
T ss_dssp CC---CCCCCCBCTTCEEEEEEEEE
T ss_pred cC---CCCCCCcCCCcceEEEEEee
Confidence 11 11444789999999987654
No 22
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=39.29 E-value=15 Score=44.39 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCCCCeeeeeecceeeeCCCeEEEEEEE
Q 008822 36 DGVLPTLKLQTDKNVYTPGDTVFVTVEI 63 (552)
Q Consensus 36 ~~~~~~l~l~~dk~vY~PGd~V~~~Iei 63 (552)
+.-...+=+|+||.+|+|||.|...|=.
T Consensus 100 ~~~~~~~fiqTDK~iY~Pgq~V~~rv~~ 127 (1451)
T 4acq_A 100 KNEDSLVFVQTDKSIYKPGQTVKFRVVS 127 (1451)
T ss_dssp ECCCCEEEEEESCSEECTTCEEEEEEEE
T ss_pred EccCccEEEECCCCcCCCCCEEEEEEEE
Confidence 3345678999999999999999865433
No 23
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=36.03 E-value=17 Score=44.19 Aligned_cols=29 Identities=41% Similarity=0.332 Sum_probs=23.5
Q ss_pred CCCCeeeeeecceeeeCCCeEEEEEEEec
Q 008822 37 GVLPTLKLQTDKNVYTPGDTVFVTVEICN 65 (552)
Q Consensus 37 ~~~~~l~l~~dk~vY~PGd~V~~~Iei~~ 65 (552)
.-...+-+++||.+|||||+|.+.+=.-+
T Consensus 121 ~~~~~~fiqTDR~iYrPGqtV~~r~i~~d 149 (1676)
T 3cu7_A 121 YDNGFLFIHTDKPVYTPDQSVKVRVYSLN 149 (1676)
T ss_dssp CCCSEEEEEESCSEECTTCEECEEEEEEC
T ss_pred cCCCcEEEECCCCccCCCCEEEEEEEEEC
Confidence 34667889999999999999987765544
No 24
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=35.96 E-value=20 Score=43.59 Aligned_cols=27 Identities=44% Similarity=0.584 Sum_probs=21.7
Q ss_pred CCeeeeeecceeeeCCCeEEEEEEEec
Q 008822 39 LPTLKLQTDKNVYTPGDTVFVTVEICN 65 (552)
Q Consensus 39 ~~~l~l~~dk~vY~PGd~V~~~Iei~~ 65 (552)
...+-+++||.+|||||+|.+.+=.-+
T Consensus 126 ~~~~fiqTDR~iYrPGqtV~~r~i~~d 152 (1661)
T 2b39_A 126 SGYLFIQTDKTIYTPGSTVLYRVFTVD 152 (1661)
T ss_dssp CCEEEEEESCSEECTTSEEEEEEEEEC
T ss_pred CCcEEEecCCCccCCCCEEEEEEEEEC
Confidence 456889999999999999986654443
No 25
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=33.37 E-value=22 Score=43.54 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCCeeeeeecceeeeCCCeEEEEEEE
Q 008822 38 VLPTLKLQTDKNVYTPGDTVFVTVEI 63 (552)
Q Consensus 38 ~~~~l~l~~dk~vY~PGd~V~~~Iei 63 (552)
-...+=+|+||.+|+|||.|...|=.
T Consensus 124 ~~~~~FiqTDk~iYrPGqtV~~rvi~ 149 (1642)
T 3prx_B 124 QSSFLFIQTDKGIYTPGSPVLYRVFS 149 (1642)
T ss_dssp CCCCEEEEESCSEECTTCEEEEEEEE
T ss_pred CCCeEEEEcCCCcCCCCCEEEEEEEE
Confidence 44788999999999999999865533
No 26
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=27.75 E-value=2.6e+02 Score=29.47 Aligned_cols=86 Identities=17% Similarity=0.302 Sum_probs=48.5
Q ss_pred Ceeeeeecceeee-CCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEec
Q 008822 40 PTLKLQTDKNVYT-PGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLD 118 (552)
Q Consensus 40 ~~l~l~~dk~vY~-PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~ 118 (552)
.++++...++.|+ ||..+++++++.|..+.. +.+.++..+ +.+.+|+...+....-| +.+..+
T Consensus 248 ~~V~~~v~~A~Y~vpgR~l~~~~~VtN~g~~p-------vrlgeF~tA--~vrFln~~~~~~~~~~P-------~~lla~ 311 (382)
T 1yew_A 248 PTVSVKVEDATYRVPGRAMRMKLTITNHGNSP-------IRLGEFYTA--SVRFLDSDVYKDTTGYP-------EDLLAE 311 (382)
T ss_dssp CSEEEEEEEEEEESSCSEEEEEEEEEECSSSC-------EEEEEEECS--SCEEECTTTCCCCSCCC-------GGGEET
T ss_pred CceEEEeeccEEecCCcEEEEEEEEEcCCCCc-------eEeeeEEec--cEEEeCCcccccCCCCh-------HHhhcc
Confidence 3477777666665 999999999999988432 334433322 33445554322111111 112222
Q ss_pred cCcceeeec-cccCCCCeeEEEEEEe
Q 008822 119 ISASKLISN-QIVSSDATKSYVIRTE 143 (552)
Q Consensus 119 ~~~~~Lvsd-~~l~~g~tk~y~vr~~ 143 (552)
+-- -++| -.|.|||||+..|..+
T Consensus 312 ~gL--~vsd~~pI~PGETr~~~v~a~ 335 (382)
T 1yew_A 312 DGL--SVSDNSPLAPGETRTVDVTAS 335 (382)
T ss_dssp TCE--EESCCSCBCTTCEEEEEEEEE
T ss_pred CCc--eeCCCCCcCCCceeEEEEEee
Confidence 221 2333 3489999999987653
No 27
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=24.79 E-value=55 Score=30.91 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=49.6
Q ss_pred CeeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCC-----cc-cccc
Q 008822 40 PTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGS-----KQ-RRGE 113 (552)
Q Consensus 40 ~~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~s-----kq-~rge 113 (552)
+.+.+++||+-..-||.|+++|.|.|-.+-+ ++|+- =|-||.-+|.-.|..|. .- ..|.
T Consensus 7 ~~I~~~lDKT~~~VGdII~Atv~vnnI~nfA-------------GYQvN--IKYDP~VLqaVn~~tG~~~~~~t~P~~gt 71 (166)
T 2bm3_A 7 SSIELKFDRNKGEVGDILIGTVRINNIKNFA-------------GFQVN--IVYDPKVLMAVDPETGKEFTSSTFPPGRT 71 (166)
T ss_dssp CEEEEEESCSCCCTTCEEEEEEEEESCTTEE-------------EEEEE--EECCTTTEEEECTTTCCBCCTTCCCCCCS
T ss_pred CeEEEEecCcceeeCCEEEEEEEEccccccc-------------ceEEE--EEECccceEeecCCcCCccccccCCCCCc
Confidence 5689999999999999999999998877221 12211 26788888863332222 11 1233
Q ss_pred EEEeccCcceeeeccccCCC
Q 008822 114 FAFLDISASKLISNQIVSSD 133 (552)
Q Consensus 114 ~if~~~~~~~Lvsd~~l~~g 133 (552)
.+-..+.-|.-++.--|..|
T Consensus 72 lL~n~~Y~p~~~a~N~i~~G 91 (166)
T 2bm3_A 72 VLKNNAYGPIQIADNDPEKG 91 (166)
T ss_dssp SSCCGGGCEEEEECCBGGGT
T ss_pred ccccCCcCcceeeccccccc
Confidence 33335666666666666665
No 28
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=20.08 E-value=2.2e+02 Score=30.02 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=35.1
Q ss_pred eCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeee
Q 008822 381 MDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETI 432 (552)
Q Consensus 381 rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~I 432 (552)
.+|..-.+++|. |..|..||.|...++.++ .+...+-.+.+.|.-.-.+
T Consensus 209 ssGpl~L~vsLd--K~~Y~pGE~I~V~v~I~N-~Ssk~Vk~Ikv~L~Q~~~v 257 (380)
T 3ugu_A 209 SDKPLRLAVSLS--KEIYYHGEPIPVTVAVTN-STEKTVKKIKVLVEQVTNV 257 (380)
T ss_dssp CCCEEEEEEEES--CSEEETTCCEEEEEEEEE-CSSSCEEEEEEEEEEEEEE
T ss_pred cCCCEEEEEEeC--CccCcCCCEEEEEEEEEc-CCCCeEeEEEEEEEEEEEE
Confidence 567777888884 789999999999999984 4545555555555544443
Done!