BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008824
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 30/272 (11%)
Query: 229 LKSLNLSDNALGEKGVRAFGAXXXXXXXXXXXXXM-NDGISKEAARAVCELIPSTEKLRV 287
LK L +S+N +GE G R G + N G++ + +C ++ S LR
Sbjct: 168 LKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQASLRE 227
Query: 288 LQFHNNMTGDEG-AQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDL 346
L +N GD G A+ ++ + L+ I + G L L++ LK+L L
Sbjct: 228 LDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKELSL 287
Query: 347 RDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGN 406
N G D+G + +L LE L +
Sbjct: 288 AGNKLG----------------------------DEGARLLCESLLQPGCQLESLWVKSC 319
Query: 407 DITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466
+T +S + +HL +L L+ N+L D G ++ +AL Q L+V+ + +
Sbjct: 320 SLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVT 379
Query: 467 RAGARQLAQVVIQKPGFKQLNIDANIISEEGI 498
+G LA +++ ++L++ N + + G+
Sbjct: 380 NSGCSSLASLLLANRSLRELDLSNNCVGDPGV 411
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 30/280 (10%)
Query: 228 VLKSLNLSDNALGEKGVRAFGAXXXXXXXXXXXXXMNDGISKEAARAVCE-LIPSTEKLR 286
L+ L+LSDN LG+ G+R CE L+ L
Sbjct: 110 TLRELHLSDNPLGDAGLRLL----------------------------CEGLLDPQCHLE 141
Query: 287 VLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEAL-ESCTHLKKLD 345
LQ + ++ V++ + L++ S+ IG G L + L +S L+ L
Sbjct: 142 KLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLR 201
Query: 346 LRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAG 405
L + L +++ A L E+ L L D G + L A L+ L L
Sbjct: 202 LENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWE 261
Query: 406 NDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465
DIT + + AK+ L +L+LA N+L D+GA + ++L Q QL+ + + S +
Sbjct: 262 CDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSL 321
Query: 466 RRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIF 505
A + ++ ++ Q +L + +N + + GI E+ +
Sbjct: 322 TAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQAL 361
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 1/234 (0%)
Query: 282 TEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEAL-ESCTH 340
T K++ L N + G + ++ P L + S +G G L E L + H
Sbjct: 80 TCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCH 139
Query: 341 LKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEV 400
L+KL L + L+ L L E+ +S ++ + G + L SA LE
Sbjct: 140 LEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLET 199
Query: 401 LELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDM 460
L L +T + VA++ L +L+L N L D G ++ L +LK + +
Sbjct: 200 LRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWL 259
Query: 461 SSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDMLES 514
I +G R L +V+ K K+L++ N + +EG + E LES
Sbjct: 260 WECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLES 313
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 4/246 (1%)
Query: 264 NDGISKEAARAVCE-LIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTR 322
N+ + + R +C+ L S +L L+ N + + DVV L++ SS +
Sbjct: 175 NNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLSSNK 234
Query: 323 IGSEGGTALSEAL--ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLE 380
+G+ G AL L SC L+ L L + E L + L L E+ L+ L+
Sbjct: 235 LGNAGIAALCPGLLLPSC-KLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELK 293
Query: 381 DDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDG 440
D+G + +L LE L + +T + P + + + L +L ++ N L D+G
Sbjct: 294 DEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEG 353
Query: 441 AIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDE 500
++ KAL Q L+ + + + +G LA V++ ++L++ N + G+ +
Sbjct: 354 VQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGVLQ 413
Query: 501 VKEIFK 506
+ E K
Sbjct: 414 LLESLK 419
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 29/285 (10%)
Query: 227 SVLKSLNLSDNALGEKGVRAFGAXXXXXXXXXXXXXMNDGISKEAARAVCELIPSTEKLR 286
S L+ L+L+DN +G+ G++ + +G+ R EKL+
Sbjct: 109 STLRELHLNDNPMGDAGLK----------------LLCEGLQDPQCR--------LEKLQ 144
Query: 287 VLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEAL-ESCTHLKKLD 345
+ + N+T + ++ V++ ++ S+ + G L + L +S L+ L
Sbjct: 145 L--EYCNLTAT-SCEPLASVLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLK 201
Query: 346 LRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAG 405
L + L +++ A L E+ LS L + G A+ L + L L L
Sbjct: 202 LENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWE 261
Query: 406 NDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465
DIT E + + AKQ L +L+LA NELKD+GA + ++L + QL+ + + + +
Sbjct: 262 CDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTCSL 321
Query: 466 RRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPD 510
A V+ + +L + +N + +EG+ E+ + + PD
Sbjct: 322 TAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCKAL-SQPD 365
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 117/307 (38%), Gaps = 40/307 (13%)
Query: 209 PEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGAXXXXXXXXXXXXXM-NDGI 267
P A L V A F K L LS+N L E GVR + N GI
Sbjct: 157 PLASVLRVKADF---------KELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGI 207
Query: 268 SKEAARAVCELIPSTEKLRVLQFHNNMTGD-----------------------------E 298
+ + +C+++ S L+ L +N G+ E
Sbjct: 208 TAANCKDLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAE 267
Query: 299 GAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEAL-ESCTHLKKLDLRDNMFGVEAGV 357
G + + V++ L++ +S + EG L E+L E L+ L ++ +
Sbjct: 268 GCKDLCRVLRAKQSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCP 327
Query: 358 ALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVIS 417
L+ L E+ +S L D+G + AL +L L L D+T ++
Sbjct: 328 YFCSVLTKSRSLLELQMSSNPLGDEGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLA 387
Query: 418 ACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVV 477
+ A + L +L+L+ N + G +Q+ ++L+Q L+ + + + QL +
Sbjct: 388 NVLLANRSLRELDLSNNCMGGPGVLQLLESLKQPSCTLQQLVLYDIYWTNEVEEQLRALE 447
Query: 478 IQKPGFK 484
++P +
Sbjct: 448 EERPSLR 454
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%)
Query: 359 LSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISA 418
+S A+ LTE+ L L D G + L+ ++ L L +T ++
Sbjct: 44 ISSAVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQKLSLQNCGLTEAGCGILPG 103
Query: 419 CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVI 478
+ + L +L+L +N + D G + + L+ +L+ + + + LA V+
Sbjct: 104 MLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLR 163
Query: 479 QKPGFKQLNIDANIISEEGIDEVKEIFKNSPDMLES 514
K FK+L + N + E G+ + + K+S LES
Sbjct: 164 VKADFKELVLSNNDLHEPGVRILCQGLKDSACQLES 199
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%)
Query: 399 EVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVV 458
EV+ L +T IS+ V A LT+L+L NEL D G + + L+ +++ +
Sbjct: 27 EVVRLDDCGLTEVRCKDISSAVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQKL 86
Query: 459 DMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDMLE 513
+ + + AG L ++ ++L+++ N + + G+ + E ++ LE
Sbjct: 87 SLQNCGLTEAGCGILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLE 141
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 131/337 (38%), Gaps = 35/337 (10%)
Query: 179 LEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNA 238
L AR AE L+ + Q + V L D G EA + I SA L LNL N
Sbjct: 14 LSDARWAE--LLPLLQQCQVVRLDD--CGLTEARCKD---ISSALRVNPALAELNLRSNE 66
Query: 239 LGEKGVRAFGAXXXXXXXXXXXXXMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDE 298
LG+ GV + G+ PS K++ L N
Sbjct: 67 LGDVGVHC----------------VLQGLQT----------PSC-KIQKLSLQNCCLTGA 99
Query: 299 GAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEAL-ESCTHLKKLDLRDNMFGVEAGV 357
G +S ++ P L++ S +G G L E L + L+KL L +
Sbjct: 100 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159
Query: 358 ALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVIS 417
L+ L D E+ +S ++ + G + LK S LE L+L +T + +
Sbjct: 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 219
Query: 418 ACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVV 477
VA+K L +L L N+L D G ++ L +L+ + + I G L +V+
Sbjct: 220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 279
Query: 478 IQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDMLES 514
K K+L++ N + +EG + E LES
Sbjct: 280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 316
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 31/316 (9%)
Query: 229 LKSLNLSDNALGEKGVRAFGAXXXXXXXXXXXXXMN-DGISKEAARAVCELIPSTEKLRV 287
L+ L+LSDN LG+ G++ + +S + + ++ + +
Sbjct: 114 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 173
Query: 288 LQFHNNMTGDEGAQAISDVVKHSPL-LEDFRCSSTRIGSEGGTALSEALESCTHLKKLDL 346
L NN + G + + +K SP LE + S + S+ L + S L++L L
Sbjct: 174 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 233
Query: 347 RDNMFG-----------------------VEAGVA------LSKALSNYADLTEVYLSYL 377
N G E G+ L + L L E+ L+
Sbjct: 234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 293
Query: 378 NLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELK 437
L D+G + L LE L + T S+ +A + L +L ++ N L+
Sbjct: 294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 353
Query: 438 DDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEG 497
D G ++ + L Q L+V+ ++ + + LA ++ ++L++ N + + G
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413
Query: 498 IDEVKEIFKNSPDMLE 513
I ++ E + +LE
Sbjct: 414 ILQLVESVRQPGCLLE 429
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 131/337 (38%), Gaps = 35/337 (10%)
Query: 179 LEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNA 238
L AR AE L+ + Q + V L D G EA + I SA L LNL N
Sbjct: 15 LSDARWAE--LLPLLQQCQVVRLDD--CGLTEARCKD---ISSALRVNPALAELNLRSNE 67
Query: 239 LGEKGVRAFGAXXXXXXXXXXXXXMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDE 298
LG+ GV + G+ PS K++ L N
Sbjct: 68 LGDVGVHC----------------VLQGLQT----------PSC-KIQKLSLQNCCLTGA 100
Query: 299 GAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEAL-ESCTHLKKLDLRDNMFGVEAGV 357
G +S ++ P L++ S +G G L E L + L+KL L +
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160
Query: 358 ALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVIS 417
L+ L D E+ +S ++ + G + LK S LE L+L +T + +
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220
Query: 418 ACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVV 477
VA+K L +L L N+L D G ++ L +L+ + + I G L +V+
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280
Query: 478 IQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDMLES 514
K K+L++ N + +EG + E LES
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 31/316 (9%)
Query: 229 LKSLNLSDNALGEKGVRAFGAXXXXXXXXXXXXXMN-DGISKEAARAVCELIPSTEKLRV 287
L+ L+LSDN LG+ G++ + +S + + ++ + +
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 288 LQFHNNMTGDEGAQAISDVVKHSPL-LEDFRCSSTRIGSEGGTALSEALESCTHLKKLDL 346
L NN + G + + +K SP LE + S + S+ L + S L++L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234
Query: 347 RDNMFG-----------------------VEAGVA------LSKALSNYADLTEVYLSYL 377
N G E G+ L + L L E+ L+
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294
Query: 378 NLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELK 437
L D+G + L LE L + T S+ +A + L +L ++ N L+
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354
Query: 438 DDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEG 497
D G ++ + L Q L+V+ ++ + + LA ++ ++L++ N + + G
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414
Query: 498 IDEVKEIFKNSPDMLE 513
I ++ E + +LE
Sbjct: 415 ILQLVESVRQPGCLLE 430
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 111/271 (40%), Gaps = 13/271 (4%)
Query: 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAAL 224
+S +I S + G EAAR + S L+ + SD GR + E E + + AL
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90
Query: 225 -EGSVLKSLNLSDNALGEKGVRAFGAXXXXXXXXXXXXXMNDGISKEA----ARAVCELI 279
+ L ++ LSDNA G N+G+ +A ARA+ EL
Sbjct: 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150
Query: 280 PSTE-----KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEG-GTALSE 333
+ + LR + N + + + + LL + I EG L E
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210
Query: 334 ALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKG 393
L C LK LDL+DN F AL+ AL ++ +L E+ L+ L G A+ +A
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270
Query: 394 SAPL-LEVLELAGNDITVEAAPVISACVAAK 423
+ L+ L L N+I ++A + + K
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 32/248 (12%)
Query: 267 ISKEAARAVCELIPSTEKLRVLQFHNNMTG------DEGAQAISDVVKHSPLLEDFRCSS 320
I EAAR + E I S + L + +F + TG E + + + P L R S
Sbjct: 44 IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103
Query: 321 TRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLE 380
G L + L T L+ L L +N G +AG +++AL A
Sbjct: 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA------------- 150
Query: 381 DDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDG 440
N +AP L + N + + + + + L + + +N ++ +G
Sbjct: 151 -------VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203
Query: 441 AIQISKALEQG---HDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEG 497
I L +G +LKV+D+ N G+ LA + P ++L ++ ++S G
Sbjct: 204 ---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260
Query: 498 IDEVKEIF 505
V + F
Sbjct: 261 AAAVVDAF 268
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 111/271 (40%), Gaps = 13/271 (4%)
Query: 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAAL 224
+S +I S + G EAAR + S L+ + SD GR + E E + + AL
Sbjct: 31 DSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 89
Query: 225 -EGSVLKSLNLSDNALGEKGVRAFGAXXXXXXXXXXXXXMNDGISKEA----ARAVCELI 279
+ L ++ LSDNA G N+G+ +A ARA+ EL
Sbjct: 90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 149
Query: 280 PSTE-----KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEG-GTALSE 333
+ + LR + N + + + + LL + I EG L E
Sbjct: 150 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 209
Query: 334 ALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKG 393
L C LK LDL+DN F AL+ AL ++ +L E+ L+ L G A+ +A
Sbjct: 210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 269
Query: 394 SAPL-LEVLELAGNDITVEAAPVISACVAAK 423
+ L+ L L N+I ++A + + K
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 32/248 (12%)
Query: 267 ISKEAARAVCELIPSTEKLRVLQFHNNMTG------DEGAQAISDVVKHSPLLEDFRCSS 320
I EAAR + E I S + L + +F + TG E + + + P L R S
Sbjct: 43 IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102
Query: 321 TRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLE 380
G L + L T L+ L L +N G +AG +++AL A
Sbjct: 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA------------- 149
Query: 381 DDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDG 440
N +AP L + N + + + + + L + + +N ++ +G
Sbjct: 150 -------VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202
Query: 441 AIQISKALEQG---HDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEG 497
I L +G +LKV+D+ N G+ LA + P ++L ++ ++S G
Sbjct: 203 ---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 259
Query: 498 IDEVKEIF 505
V + F
Sbjct: 260 AAAVVDAF 267
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 294 MTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLR------ 347
T ++G A S+V P LE S + +G + S+ T LK LDL
Sbjct: 332 FTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDF--GTTSLKYLDLSFNGVIT 387
Query: 348 --DNMFGVEAGVALSKALSNYADLTE--VYLS-----YLNLEDDGTVAITNALKGSAPLL 398
N G+E L SN ++E V+LS YL++ T N + L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 399 EVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVV 458
EVL++AGN P I ++LT L+L++ +L+ Q+S L+V+
Sbjct: 448 EVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLE-----QLSPTAFNSLSSLQVL 499
Query: 459 DMSSN 463
+M+SN
Sbjct: 500 NMASN 504
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 294 MTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLR------ 347
T ++G A S+V P LE S + +G + S+ T LK LDL
Sbjct: 332 FTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDF--GTTSLKYLDLSFNGVIT 387
Query: 348 --DNMFGVEAGVALSKALSNYADLTE--VYLS-----YLNLEDDGTVAITNALKGSAPLL 398
N G+E L SN ++E V+LS YL++ T N + L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 399 EVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVV 458
EVL++AGN P I ++LT L+L++ +L+ Q+S L+V+
Sbjct: 448 EVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLE-----QLSPTAFNSLSSLQVL 499
Query: 459 DMSSN 463
+MS N
Sbjct: 500 NMSHN 504
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 398 LEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKV 457
LE L LA N+I + HL KLNL++N L G+I S+ E D+L+V
Sbjct: 301 LEQLTLAQNEIN----KIDDNAFWGLTHLLKLNLSQNFL---GSID-SRMFEN-LDKLEV 351
Query: 458 VDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491
+D+S N IR G Q + P K+L +D N
Sbjct: 352 LDLSYNHIRALG----DQSFLGLPNLKELALDTN 381
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 294 MTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLR------ 347
T ++G A S+V P LE S + +G + S+ LK LDL
Sbjct: 356 FTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVIT 411
Query: 348 --DNMFGVEAGVALSKALSNYADLTE--VYLS-----YLNLEDDGTVAITNALKGSAPLL 398
N G+E L SN ++E V+LS YL++ T N + L
Sbjct: 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 399 EVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVV 458
EVL++AGN P I ++LT L+L++ +L+ Q+S L+V+
Sbjct: 472 EVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLE-----QLSPTAFNSLSSLQVL 523
Query: 459 DMSSN 463
+MS N
Sbjct: 524 NMSHN 528
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 339 THLKKLDLR--------DNMFGVEAGVALSKALSNYADLTE--VYLS-----YLNLEDDG 383
T LK LDL N G+E L SN ++E V+LS YL++
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 384 TVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQ 443
T N + LEVL++AGN P I ++LT L+L++ +L+ Q
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLE-----Q 189
Query: 444 ISKALEQGHDQLKVVDMSSN 463
+S L+V++MS N
Sbjct: 190 LSPTAFNSLSSLQVLNMSHN 209
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 28/170 (16%)
Query: 299 GAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVA 358
G + +S HSP F C R + L LDL DN E G+
Sbjct: 146 GLKVLSIAQAHSP---AFSCEQVR--------------AFPALTSLDLSDNPGLGERGLM 188
Query: 359 LSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISA 418
+ + + + L +E V A G P L+L+ N + P
Sbjct: 189 AALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP--HSLDLSHNSLRATVNPSAPR 246
Query: 419 CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRA 468
C+ + L LNL+ L+ Q+ K L +L+V+D+SSN + RA
Sbjct: 247 CMWSSA-LNSLNLSFAGLE-----QVPKGLPA---KLRVLDLSSNRLNRA 287
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 20/134 (14%)
Query: 331 LSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNL-EDDGTVAITN 389
S A+ +CT LK L++ N F + L L YL+L E+ T I +
Sbjct: 236 FSRAISTCTELKLLNISSNQF-----------VGPIPPLPLKSLQYLSLAENKFTGEIPD 284
Query: 390 ALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALE 449
L G+ L L+L+GN P +C + N EL D +++
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG--- 341
Query: 450 QGHDQLKVVDMSSN 463
LKV+D+S N
Sbjct: 342 -----LKVLDLSFN 350
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 20/134 (14%)
Query: 331 LSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNL-EDDGTVAITN 389
S A+ +CT LK L++ N F + L L YL+L E+ T I +
Sbjct: 239 FSRAISTCTELKLLNISSNQF-----------VGPIPPLPLKSLQYLSLAENKFTGEIPD 287
Query: 390 ALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALE 449
L G+ L L+L+GN P +C + N EL D +++
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG--- 344
Query: 450 QGHDQLKVVDMSSN 463
LKV+D+S N
Sbjct: 345 -----LKVLDLSFN 353
>pdb|3A06|A Chain A, Crystal Structure Of Dxr From Thermooga Maritia, In
Complex Fosmidomycin And Nadph
pdb|3A06|B Chain B, Crystal Structure Of Dxr From Thermooga Maritia, In
Complex Fosmidomycin And Nadph
pdb|3A14|A Chain A, Crystal Structure Of Dxr From Thermotoga Maritima, In
Comple Nadph
pdb|3A14|B Chain B, Crystal Structure Of Dxr From Thermotoga Maritima, In
Comple Nadph
Length = 376
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 389 NALKGSAPLLEVLELAGNDITVEAAPVIS---ACVAAKQHLTKLNLAENELKDDGAIQIS 445
N KGS + E+LE DIT+ A S A +A+ +H ++ LA E G +
Sbjct: 69 NVWKGSHSIEEMLEALKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVK 128
Query: 446 KALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPG 482
K L++ +L VD + I + ++ +VV+ G
Sbjct: 129 KKLKEKGTELIPVDSEHSAIFQVMEPEVEKVVLTASG 165
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 72 HYEKERDGDGSSAVQLYARECSKLLLEALKRGPRTKEYGEVPSFEKTEDVTEELTSE-KV 130
H +KE +G ++ Y R+C + + + L GPR YG V E E E + E KV
Sbjct: 81 HQDKEDEG----CLRKYRRQCMQDMHQKLSFGPR---YGFVYELETGEQFLETIEKEQKV 133
Query: 131 STADVTLFD 139
+T V +++
Sbjct: 134 TTIVVNIYE 142
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 72 HYEKERDGDGSSAVQLYARECSKLLLEALKRGPRTKEYGEVPSFEKTEDVTEELTSE-KV 130
H +KE +G ++ Y R+C + + + L GPR YG V E E E + E KV
Sbjct: 81 HQDKEDEG----CLRKYRRQCMQDMHQKLSFGPR---YGFVYELETGEQFLETIEKEQKV 133
Query: 131 STADVTLFD 139
+T V +++
Sbjct: 134 TTIVVNIYE 142
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 401 LELAGNDITVEAAP-VISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVD 459
L L GND+ ++++ +I A ++ LNL N L +++K L + +D
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202
Query: 460 MSSNFIRRAGARQLAQVVIQKPG-FKQLNIDANIISEEGIDEVKEIFKNSPDMLES 514
+S+N + +LA + P LN+ N + ++ +K + K+S L++
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-LLKDSLKHLQT 257
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 77 RDGDGSSAVQLYARECSKLLLEALKRGPRTKEYGEVPSFEKTEDVTEELTSE-KVSTADV 135
+D + + ++ Y R+C + + + L GPR YG V E E E + E K++T V
Sbjct: 82 KDKEDENCLRKYRRQCMQDMHQKLSFGPR---YGFVYELESGEQFLETIEKEQKITTIVV 138
Query: 136 TLFD 139
+++
Sbjct: 139 HIYE 142
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 266 GISKEAARAVCELIPSTEKLRVLQFHNNMTGDEG-----AQAISDVVKHS-------PLL 313
G+S R +C + +K+ + N M G++G A I D V+ LL
Sbjct: 236 GVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLL 295
Query: 314 EDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVY 373
+D + S + +ALE LK L +FG++ ++ +L+ D
Sbjct: 296 QDPKLSQNK----------QALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDY---- 341
Query: 374 LSYLNLEDDGTVAITNALKGSAPL 397
Y + + + T A G PL
Sbjct: 342 --YTGVIYEAVLLQTPAQAGEEPL 363
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 72 HYEKERDGDGSSAVQLYARECSKLLLEALKRGPRTKEYGEVPSFEKTEDVTEELTSE-KV 130
H +KE +G ++ Y R+C + + L GPR YG V E E E + E KV
Sbjct: 68 HQDKEDEG----CLRKYRRQCXQDXHQKLSFGPR---YGFVYELETGEQFLETIEKEQKV 120
Query: 131 STADVTLFD 139
+T V +++
Sbjct: 121 TTIVVNIYE 129
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 32/143 (22%)
Query: 328 GTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAI 387
GT E LE+ L+KLDL + +EA + L N +L YLNL + + +
Sbjct: 341 GTRCLEKLEN---LQKLDLSHS--DIEASDCCNLQLKNLR-----HLQYLNLSYNEPLGL 390
Query: 388 TNALKGSAPLLEVLELAGNDITVEA--APV----------ISAC---------VAAKQHL 426
+ P LE+L++A + V+A +P +S C +A Q L
Sbjct: 391 EDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDL 450
Query: 427 TKLNLAENELKDDGAIQISKALE 449
LNL N + DG+I + L+
Sbjct: 451 RHLNLQGNSFQ-DGSISKTNLLQ 472
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 266 GISKEAARAVCELIPSTEKLRVLQFHNNMTGDEG-----AQAISDVVKHS-------PLL 313
G+S R +C + +K+ + N M G++G A I D V+ LL
Sbjct: 183 GVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLL 242
Query: 314 EDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVY 373
+D + S + +ALE LK L +FG++ ++ +L+ D
Sbjct: 243 QDPKLSQNK----------QALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDY---- 288
Query: 374 LSYLNLEDDGTVAITNALKGSAPL 397
Y + + + T A G PL
Sbjct: 289 --YTGVIYEAVLLQTPAQAGEEPL 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,237,516
Number of Sequences: 62578
Number of extensions: 481946
Number of successful extensions: 1198
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 64
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)