Query 008824
Match_columns 552
No_of_seqs 463 out of 3414
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 17:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1909 Ran GTPase-activating 100.0 1.1E-40 2.3E-45 314.1 23.6 368 136-505 2-381 (382)
2 KOG1909 Ran GTPase-activating 100.0 9.7E-32 2.1E-36 253.7 17.3 281 227-508 30-327 (382)
3 cd00116 LRR_RI Leucine-rich re 100.0 6.9E-28 1.5E-32 242.7 33.4 289 228-518 24-315 (319)
4 cd00116 LRR_RI Leucine-rich re 100.0 5.1E-27 1.1E-31 236.3 32.9 291 194-493 23-319 (319)
5 PF13943 WPP: WPP domain 100.0 1.5E-29 3.3E-34 195.8 9.0 94 14-107 1-94 (99)
6 COG5238 RNA1 Ran GTPase-activa 99.9 3.5E-25 7.6E-30 202.1 16.0 322 136-507 2-331 (388)
7 PLN00113 leucine-rich repeat r 99.9 1.6E-22 3.6E-27 233.2 11.1 206 131-380 116-321 (968)
8 PLN00113 leucine-rich repeat r 99.9 1.9E-22 4.1E-27 232.7 11.3 183 131-351 138-320 (968)
9 KOG4194 Membrane glycoprotein 99.9 5.3E-24 1.2E-28 212.7 -1.5 316 134-494 79-429 (873)
10 KOG4194 Membrane glycoprotein 99.9 2.1E-23 4.5E-28 208.5 -1.7 307 136-494 55-405 (873)
11 COG5238 RNA1 Ran GTPase-activa 99.8 2.3E-19 4.9E-24 164.3 17.3 242 255-498 30-289 (388)
12 KOG0444 Cytoskeletal regulator 99.8 5.4E-22 1.2E-26 199.6 -5.2 160 303-492 214-373 (1255)
13 KOG4308 LRR-containing protein 99.8 1.1E-18 2.3E-23 180.9 10.5 369 136-514 90-465 (478)
14 KOG0444 Cytoskeletal regulator 99.8 2.3E-20 5E-25 188.0 -2.9 273 131-464 101-373 (1255)
15 KOG4308 LRR-containing protein 99.7 1.4E-17 3.1E-22 172.5 10.3 366 123-495 105-474 (478)
16 PRK15370 E3 ubiquitin-protein 99.6 3.2E-16 7E-21 170.8 10.0 263 165-506 178-440 (754)
17 PRK15387 E3 ubiquitin-protein 99.6 4.3E-16 9.2E-21 168.9 8.9 269 132-504 200-468 (788)
18 KOG0618 Serine/threonine phosp 99.6 7.9E-17 1.7E-21 169.9 0.8 226 227-492 241-487 (1081)
19 KOG0472 Leucine-rich repeat pr 99.6 3.9E-17 8.5E-22 157.3 -2.2 276 165-494 228-541 (565)
20 KOG0618 Serine/threonine phosp 99.5 1.9E-15 4.2E-20 159.6 3.0 188 282-500 240-471 (1081)
21 KOG0472 Leucine-rich repeat pr 99.5 2.3E-17 5E-22 158.9 -10.7 256 194-507 68-330 (565)
22 PRK15370 E3 ubiquitin-protein 99.5 1.9E-14 4.2E-19 157.0 10.1 259 132-473 177-435 (754)
23 PRK15387 E3 ubiquitin-protein 99.5 1.7E-14 3.7E-19 156.6 8.4 245 133-474 222-466 (788)
24 KOG4341 F-box protein containi 99.4 2.5E-13 5.4E-18 132.2 7.0 255 227-506 190-452 (483)
25 KOG4341 F-box protein containi 99.4 7.8E-13 1.7E-17 128.8 9.8 297 165-495 110-415 (483)
26 KOG2120 SCF ubiquitin ligase, 99.4 2.5E-12 5.3E-17 120.0 10.0 201 284-507 186-388 (419)
27 PLN03210 Resistant to P. syrin 99.4 1.2E-12 2.5E-17 152.5 9.8 288 133-492 589-904 (1153)
28 KOG3207 Beta-tubulin folding c 99.4 1.1E-13 2.3E-18 135.4 0.5 239 233-495 99-340 (505)
29 KOG4237 Extracellular matrix p 99.3 1.1E-13 2.4E-18 133.6 -1.6 316 136-509 49-375 (498)
30 KOG2120 SCF ubiquitin ligase, 99.3 1E-11 2.2E-16 115.9 11.3 137 165-325 136-274 (419)
31 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.9E-18 133.1 -1.4 266 187-497 60-338 (498)
32 PLN03210 Resistant to P. syrin 99.3 5.1E-12 1.1E-16 147.2 10.2 34 453-491 846-879 (1153)
33 KOG3207 Beta-tubulin folding c 99.3 6.5E-13 1.4E-17 130.0 -1.0 242 136-411 96-341 (505)
34 KOG0617 Ras suppressor protein 99.1 3.1E-13 6.6E-18 116.2 -8.6 153 284-466 34-186 (264)
35 KOG0617 Ras suppressor protein 99.1 2.4E-13 5.2E-18 116.8 -10.1 130 284-437 57-186 (264)
36 KOG1259 Nischarin, modulator o 99.0 3.4E-11 7.3E-16 112.6 -0.6 129 339-494 284-412 (490)
37 KOG2982 Uncharacterized conser 98.9 7E-10 1.5E-14 103.9 4.3 212 257-495 47-263 (418)
38 PF14580 LRR_9: Leucine-rich r 98.9 4.5E-10 9.7E-15 100.8 2.4 127 340-488 20-147 (175)
39 PF14580 LRR_9: Leucine-rich r 98.9 4.6E-10 1E-14 100.7 1.4 36 395-431 112-147 (175)
40 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.5E-14 102.5 0.7 161 308-496 281-442 (490)
41 KOG1859 Leucine-rich repeat pr 98.7 7.3E-09 1.6E-13 107.8 4.1 251 212-503 71-331 (1096)
42 KOG0531 Protein phosphatase 1, 98.6 3.5E-09 7.6E-14 110.3 -1.8 243 193-494 48-290 (414)
43 COG4886 Leucine-rich repeat (L 98.6 2.8E-08 6E-13 103.1 5.0 102 228-349 117-219 (394)
44 KOG0531 Protein phosphatase 1, 98.6 1.4E-09 3.1E-14 113.2 -5.0 223 227-495 95-319 (414)
45 KOG1947 Leucine rich repeat pr 98.6 1.9E-07 4E-12 99.5 9.7 136 227-374 188-328 (482)
46 KOG0532 Leucine-rich repeat (L 98.6 1.8E-09 3.9E-14 109.4 -5.9 195 256-491 76-270 (722)
47 COG4886 Leucine-rich repeat (L 98.6 5.2E-08 1.1E-12 101.1 4.7 177 194-411 116-292 (394)
48 KOG0532 Leucine-rich repeat (L 98.5 1.8E-09 3.9E-14 109.4 -6.8 131 252-410 118-248 (722)
49 KOG1859 Leucine-rich repeat pr 98.5 1.7E-08 3.7E-13 105.1 -0.5 224 243-508 75-308 (1096)
50 KOG3665 ZYG-1-like serine/thre 98.5 6.6E-07 1.4E-11 97.5 11.8 147 227-388 122-271 (699)
51 KOG3665 ZYG-1-like serine/thre 98.5 5.1E-07 1.1E-11 98.4 10.8 116 310-439 147-265 (699)
52 KOG1947 Leucine rich repeat pr 98.4 1.9E-06 4.2E-11 91.7 11.2 229 256-504 162-425 (482)
53 KOG2982 Uncharacterized conser 98.2 1.8E-06 3.9E-11 81.4 5.6 188 227-438 71-263 (418)
54 PLN03150 hypothetical protein; 98.1 5.7E-06 1.2E-10 90.4 7.1 90 313-415 420-509 (623)
55 KOG4658 Apoptotic ATPase [Sign 98.0 2.5E-06 5.5E-11 95.5 1.9 82 194-293 571-652 (889)
56 PLN03150 hypothetical protein; 97.9 1.4E-05 3.1E-10 87.3 6.8 107 341-464 420-526 (623)
57 KOG4242 Predicted myosin-I-bin 97.9 4.9E-06 1.1E-10 83.1 1.2 319 165-508 165-495 (553)
58 KOG4242 Predicted myosin-I-bin 97.8 1.7E-05 3.6E-10 79.4 3.7 293 170-480 192-495 (553)
59 PF13855 LRR_8: Leucine rich r 97.8 4.1E-06 8.8E-11 61.5 -0.8 13 424-436 25-37 (61)
60 KOG2123 Uncharacterized conser 97.7 1.1E-05 2.5E-10 75.4 0.7 120 366-507 18-138 (388)
61 PF13855 LRR_8: Leucine rich r 97.6 6.2E-06 1.4E-10 60.6 -1.3 59 368-435 2-60 (61)
62 KOG4579 Leucine-rich repeat (L 97.6 1.5E-05 3.3E-10 66.8 -0.2 109 228-352 28-136 (177)
63 PF12799 LRR_4: Leucine Rich r 97.5 9.7E-05 2.1E-09 49.9 2.9 36 454-494 2-37 (44)
64 KOG4658 Apoptotic ATPase [Sign 97.5 4.3E-05 9.3E-10 85.8 1.5 83 280-376 568-651 (889)
65 KOG2123 Uncharacterized conser 97.5 1.5E-05 3.3E-10 74.6 -1.7 93 395-503 18-110 (388)
66 KOG4579 Leucine-rich repeat (L 97.4 5.6E-05 1.2E-09 63.5 1.4 110 255-381 27-137 (177)
67 PF12799 LRR_4: Leucine Rich r 97.3 0.00022 4.8E-09 48.2 3.2 36 284-324 2-37 (44)
68 KOG3735 Tropomodulin and leiom 97.3 0.0011 2.4E-08 64.0 8.5 123 365-489 196-321 (353)
69 KOG1644 U2-associated snRNP A' 97.2 0.00012 2.7E-09 65.6 1.4 14 255-268 64-77 (233)
70 KOG3864 Uncharacterized conser 97.2 0.00029 6.2E-09 63.3 3.2 101 396-508 101-206 (221)
71 KOG3735 Tropomodulin and leiom 97.2 0.00091 2E-08 64.6 6.7 118 227-344 198-318 (353)
72 KOG1644 U2-associated snRNP A' 97.1 0.00016 3.5E-09 64.9 1.2 36 284-325 43-78 (233)
73 smart00368 LRR_RI Leucine rich 97.1 0.0008 1.7E-08 40.5 3.4 26 481-506 2-27 (28)
74 KOG2739 Leucine-rich acidic nu 97.0 0.00035 7.5E-09 65.4 1.8 64 395-465 64-128 (260)
75 smart00368 LRR_RI Leucine rich 96.9 0.0012 2.6E-08 39.7 3.3 26 424-449 2-27 (28)
76 PRK15386 type III secretion pr 96.5 0.0029 6.3E-08 64.3 4.4 135 165-350 52-188 (426)
77 PF13516 LRR_6: Leucine Rich r 96.3 0.0031 6.7E-08 36.3 1.9 22 481-502 2-23 (24)
78 KOG3864 Uncharacterized conser 96.1 0.0034 7.4E-08 56.6 2.2 81 341-433 103-185 (221)
79 PF13516 LRR_6: Leucine Rich r 95.9 0.0042 9.1E-08 35.8 1.4 21 424-444 2-22 (24)
80 KOG2739 Leucine-rich acidic nu 95.8 0.005 1.1E-07 57.8 2.3 67 362-435 60-127 (260)
81 PRK15386 type III secretion pr 95.3 0.035 7.7E-07 56.6 6.3 78 305-409 46-125 (426)
82 smart00367 LRR_CC Leucine-rich 93.7 0.07 1.5E-06 31.3 2.5 22 481-502 2-24 (26)
83 smart00367 LRR_CC Leucine-rich 93.0 0.11 2.4E-06 30.4 2.6 22 453-474 2-24 (26)
84 KOG3763 mRNA export factor TAP 86.4 1.5 3.2E-05 46.0 6.0 66 394-466 216-283 (585)
85 PF13504 LRR_7: Leucine rich r 84.4 0.69 1.5E-05 24.0 1.4 13 482-494 2-14 (17)
86 KOG3763 mRNA export factor TAP 80.5 10 0.00022 40.1 9.1 75 156-241 209-284 (585)
87 PF00560 LRR_1: Leucine Rich R 72.0 1.9 4.2E-05 23.9 0.8 13 482-494 1-13 (22)
88 KOG1832 HIV-1 Vpr-binding prot 71.1 1.7 3.6E-05 47.8 0.7 18 420-437 1296-1313(1516)
89 PF13306 LRR_5: Leucine rich r 60.3 1.5 3.2E-05 37.0 -1.9 11 423-433 80-90 (129)
90 smart00365 LRR_SD22 Leucine-ri 58.8 8 0.00017 22.6 1.7 12 454-465 3-14 (26)
91 smart00370 LRR Leucine-rich re 57.5 10 0.00023 21.7 2.1 13 397-409 3-15 (26)
92 smart00369 LRR_TYP Leucine-ric 57.5 10 0.00023 21.7 2.1 13 397-409 3-15 (26)
93 PF04931 DNA_pol_phi: DNA poly 53.5 12 0.00026 42.5 3.5 16 491-506 618-633 (784)
94 KOG0473 Leucine-rich repeat pr 53.1 0.44 9.6E-06 44.3 -6.4 60 284-353 66-125 (326)
95 KOG0473 Leucine-rich repeat pr 47.3 0.35 7.7E-06 44.9 -8.0 85 227-326 42-126 (326)
96 PF13306 LRR_5: Leucine rich r 42.6 3.2 7E-05 34.8 -2.5 106 363-491 8-113 (129)
97 PRK12766 50S ribosomal protein 42.4 24 0.00052 33.1 2.9 14 493-506 44-57 (232)
98 KOG1832 HIV-1 Vpr-binding prot 38.5 16 0.00036 40.6 1.5 11 453-463 1300-1310(1516)
99 smart00364 LRR_BAC Leucine-ric 32.7 28 0.00062 20.4 1.2 13 425-437 3-15 (26)
100 PF11116 DUF2624: Protein of u 29.2 72 0.0016 24.8 3.2 46 25-71 5-53 (85)
101 PF04871 Uso1_p115_C: Uso1 / p 27.8 40 0.00087 28.9 1.9 15 509-523 104-118 (136)
102 PF02697 DUF217: Uncharacteriz 26.7 1.5E+02 0.0032 22.2 4.5 47 18-64 17-63 (71)
103 PF15387 DUF4611: Domain of un 25.9 36 0.00079 26.6 1.1 10 497-506 34-43 (96)
104 PF04931 DNA_pol_phi: DNA poly 23.8 33 0.00073 39.0 0.8 15 464-478 619-633 (784)
105 PF01827 FTH: FTH domain; Int 22.2 4.7E+02 0.01 21.9 10.2 60 421-488 65-124 (142)
106 KOG3130 Uncharacterized conser 21.4 53 0.0012 33.1 1.6 35 504-538 254-288 (514)
107 KOG0699 Serine/threonine prote 20.6 59 0.0013 32.4 1.7 13 534-546 304-316 (542)
No 1
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-40 Score=314.07 Aligned_cols=368 Identities=43% Similarity=0.623 Sum_probs=338.4
Q ss_pred cEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHH
Q 008824 136 TLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALE 215 (552)
Q Consensus 136 ~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~ 215 (552)
..+.+.++..++.+.++.+.+...+... ..+++|+||||.|+.+++++++..|.+. +.|+..++|+.+.|++..+.++
T Consensus 2 ~~~s~~gk~lkl~t~ed~~~v~~~~~~~-~s~~~l~lsgnt~G~EAa~~i~~~L~~~-~~L~~v~~sd~ftGR~~~Ei~e 79 (382)
T KOG1909|consen 2 QFFSIGGKSLKLETEEDEKDVEEELEPM-DSLTKLDLSGNTFGTEAARAIAKVLASK-KELREVNLSDMFTGRLKDEIPE 79 (382)
T ss_pred ceeccCCeeeeeehHhhhhhHHHHhccc-CceEEEeccCCchhHHHHHHHHHHHhhc-ccceeeehHhhhcCCcHHHHHH
Confidence 3467778888888777777777766666 8999999999999999999999999995 6999999999999999999999
Q ss_pred HHHHHHHHhcCC-CccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHH---------hcCCCCCc
Q 008824 216 VMAIFSAALEGS-VLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCE---------LIPSTEKL 285 (552)
Q Consensus 216 ~l~~~~~~l~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---------~l~~~~~L 285 (552)
.|.+++.++..+ +|++||||+|.|+..+++.|..+|+++..|++|+|.||+++..+...++. .+.+.+.|
T Consensus 80 ~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 80 ALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred HHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 999999999865 99999999999999999999999999999999999999999998888555 34567899
Q ss_pred cEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHcc
Q 008824 286 RVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSN 365 (552)
Q Consensus 286 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~ 365 (552)
+++..++|++.+.|+..++..++..+.|+.++++.|.|...|+..+..++.+|++|+.|||++|.|+.++...+.+.++.
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s 239 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS 239 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCC--CchHHHH
Q 008824 366 YADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENEL--KDDGAIQ 443 (552)
Q Consensus 366 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--~d~g~~~ 443 (552)
+++|+.|++++|.+...|...+..++....+.|++|.|.+|.++..+...++.++...|.|..|+|++|.+ .|.++..
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~e 319 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDE 319 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHH
Q 008824 444 ISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIF 505 (552)
Q Consensus 444 l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l 505 (552)
++..+......+...+.+.+.+.+.|.....+.......-+.++..++.|.+++++++.+++
T Consensus 320 i~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~~e~~ 381 (382)
T KOG1909|consen 320 IASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEELKEIF 381 (382)
T ss_pred HHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHhhhhc
Confidence 99877534566777888889999999999888888888889999999999999998887754
No 2
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.98 E-value=9.7e-32 Score=253.67 Aligned_cols=281 Identities=29% Similarity=0.460 Sum_probs=258.3
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCC---CCH---HHHHHHHHhcCCCCCccEEEcccCCCChHHH
Q 008824 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDG---ISK---EAARAVCELIPSTEKLRVLQFHNNMTGDEGA 300 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~---i~~---~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~ 300 (552)
..++.|+||+|.++....+.++..|++.+.|+..++++-- +.. .....+..++..+++|+.|+||.|-++..|+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 6899999999999999999999999999999999988532 222 3445667778888899999999999999999
Q ss_pred HHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhc---------CCCCCEEecCCCCCChHHHHHHHHHHccCCcccE
Q 008824 301 QAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALES---------CTHLKKLDLRDNMFGVEAGVALSKALSNYADLTE 371 (552)
Q Consensus 301 ~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~---------~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~ 371 (552)
+.+...+.++..|++|.|.+|.++..+...+..++.. -+.|+.+..++|.+...+...+...+..++.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 9999999999999999999999999999887776543 4689999999999999999999999999999999
Q ss_pred EecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhC
Q 008824 372 VYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQG 451 (552)
Q Consensus 372 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~ 451 (552)
+.+.+|.|...|+..+..++.+ |++|++|||..|.++..+...++..+..+++|+.|++++|.+.+.|+..+.+++...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred EEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 9999999999999989999988 699999999999999999999999999999999999999999999999999999977
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCC--CHHHHHHHHHHHhcC
Q 008824 452 HDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANII--SEEGIDEVKEIFKNS 508 (552)
Q Consensus 452 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i--~~~g~~~l~~~l~~~ 508 (552)
.+.|+.|.|.+|.|+..++..++.++...|.|..|+|++|.+ .++|+..+...+...
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTA 327 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999 889999999988533
No 3
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=6.9e-28 Score=242.66 Aligned_cols=289 Identities=29% Similarity=0.408 Sum_probs=209.5
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCC--HHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH
Q 008824 228 VLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGIS--KEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD 305 (552)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 305 (552)
.|+.|+++++.+++.+...++..+...+.|++|+++++.+. ...+..+...+..+++|++|++++|.+.......+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 47777777777777767777777776677777777777666 4555555556656677777777777776544444444
Q ss_pred HhhcCCCccEEEeeCCCCChHHHHHHHHHhhcC-CCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHH
Q 008824 306 VVKHSPLLEDFRCSSTRIGSEGGTALSEALESC-THLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGT 384 (552)
Q Consensus 306 ~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~ 384 (552)
.... ++|++|++++|++++.+...+...+..+ ++|+.|++++|.++..+...+...+..+++|+.|++++|.+++.+.
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4444 5677777777777776666677777777 7788888888887766666667777777778888888888877776
Q ss_pred HHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCC
Q 008824 385 VAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNF 464 (552)
Q Consensus 385 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~ 464 (552)
..++..+.. +++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..++..+....+.|++|++++|.
T Consensus 183 ~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 183 RALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 666666654 4678888888888877777777777777788888888888888777777777665346788888888888
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhcCcccccccccc
Q 008824 465 IRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDMLESLEEN 518 (552)
Q Consensus 465 i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~~~l~~l~~~ 518 (552)
|++.+...+++.+..+++|+.|++++|.++++|...+.++++.....++.++-.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 887777778777777788888888888888888888888877665566655543
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.96 E-value=5.1e-27 Score=236.35 Aligned_cols=291 Identities=27% Similarity=0.393 Sum_probs=216.3
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHh-cCCCccEEEcCCCCCC--HHHHHHHHHHHhcCCCccEEEeeCCCCCHH
Q 008824 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAAL-EGSVLKSLNLSDNALG--EKGVRAFGALLESQSSLEELYLMNDGISKE 270 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l-~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 270 (552)
..|+.|+++++.++......+ ...+ ..+.|++|+++++.++ ..++..++..+..+++|+.|++++|.+...
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i------~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKAL------ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred hhccEEeecCCCCcHHHHHHH------HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 346666666666544222111 1111 2245777777777666 456666667776677788888888877765
Q ss_pred HHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcC-CCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCC
Q 008824 271 AARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHS-PLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDN 349 (552)
Q Consensus 271 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 349 (552)
....+...... ++|++|++++|.+++.+...+...+..+ ++|+.|++++|.++..+...++..+..+++|++|++++|
T Consensus 97 ~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 97 GCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 55666655544 6688888888888777777777777777 788888888888887666667777777788888888888
Q ss_pred CCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhc-CCCcCE
Q 008824 350 MFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAA-KQHLTK 428 (552)
Q Consensus 350 ~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~ 428 (552)
.++..+...++..+..+++|+.|++++|.+++.++..+...+.. +++|++|++++|.+++.+...++..+.. ++.|++
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~-~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc-cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 88877777777777777888888888888887777777666644 5788888888888887666666655432 468899
Q ss_pred EEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcC-CCccEEEecCCCC
Q 008824 429 LNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQK-PGFKQLNIDANII 493 (552)
Q Consensus 429 L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~-~~L~~L~L~~N~i 493 (552)
|++++|.+++.|...+++.+. .+++|+.|++++|.+++.|...++.++..+ +.|+.|++.+|++
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~-~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLA-EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHh-cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999888888888888887 778899999999999998888888888877 7899999888874
No 5
>PF13943 WPP: WPP domain
Probab=99.96 E-value=1.5e-29 Score=195.82 Aligned_cols=94 Identities=62% Similarity=0.994 Sum_probs=91.2
Q ss_pred eEEecCCChhhHHHHHHHHHhhcccchhhhhhccCCCHHHHHHHHHHHHHHHhhhhhhhhccccCCCCchhhhHhHHHHH
Q 008824 14 SIKLWPPSQNTRQMLVERMRNNLTTKSIFTQRYGVLTQEEAEENAKKIEDVAFSSANEHYEKERDGDGSSAVQLYARECS 93 (552)
Q Consensus 14 ~~~~w~~~~~~r~~~~~r~~~~ls~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (552)
|||+|||+|+||++||+||+.||+++++||+|||+++.+||+++|+.||+.+|++|+.|+.+++++||+++||+|+|+++
T Consensus 1 s~~lWPpsq~tR~~vv~Rm~~nLss~s~~s~ryg~l~~eeA~~~Ak~IEe~AF~~A~~~~~~~~d~dg~e~vq~YaKE~S 80 (99)
T PF13943_consen 1 SFKLWPPSQRTRDAVVERMTENLSSPSILSKRYGTLPKEEAEEAAKRIEEEAFAAANQHYETEPDGDGIEAVQLYAKEIS 80 (99)
T ss_pred CCCcCCCCchHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCc
Q 008824 94 KLLLEALKRGPRTK 107 (552)
Q Consensus 94 ~~l~e~~~~~p~~~ 107 (552)
++|++++|.+|...
T Consensus 81 klmLE~vK~~~~~~ 94 (99)
T PF13943_consen 81 KLMLEVVKSGPKAA 94 (99)
T ss_pred HHHHHHHHhcCCcc
Confidence 99999999999544
No 6
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.93 E-value=3.5e-25 Score=202.07 Aligned_cols=322 Identities=22% Similarity=0.273 Sum_probs=224.4
Q ss_pred cEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHH
Q 008824 136 TLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALE 215 (552)
Q Consensus 136 ~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~ 215 (552)
..|.++++..++-+.+++...+..+... ..+.+++||+|.|+.++++.++..+.+ ..+|+..++++.+.|+...+..+
T Consensus 2 ~~fSI~gk~lKl~T~eDvk~v~eel~~~-d~~~evdLSGNtigtEA~e~l~~~ia~-~~~L~vvnfsd~ftgr~kde~~~ 79 (388)
T COG5238 2 MKFSIGGKKLKLETKEDVKGVVEELEMM-DELVEVDLSGNTIGTEAMEELCNVIAN-VRNLRVVNFSDAFTGRDKDELYS 79 (388)
T ss_pred ceeccCCceeeccccchhhHHHHHHHhh-cceeEEeccCCcccHHHHHHHHHHHhh-hcceeEeehhhhhhcccHHHHHH
Confidence 4688999999999999999999988886 889999999999999999999999988 58999999999999998888888
Q ss_pred HHHHHHHHhc-CCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCC
Q 008824 216 VMAIFSAALE-GSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNM 294 (552)
Q Consensus 216 ~l~~~~~~l~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 294 (552)
.+.++..++- +++|+..+||+|.++......+.+++.+.+.|.+|.++||++.+.+...++.++..+.
T Consensus 80 ~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la----------- 148 (388)
T COG5238 80 NLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA----------- 148 (388)
T ss_pred HHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH-----------
Confidence 8888777765 7899999999999999888899999999999999999999998877776665541110
Q ss_pred CChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEec
Q 008824 295 TGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYL 374 (552)
Q Consensus 295 l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L 374 (552)
...-...-|.|+.+.+..|++........+..+. ....|+.+.+
T Consensus 149 --------~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~----------------------------sh~~lk~vki 192 (388)
T COG5238 149 --------YNKKAADKPKLEVVICGRNRLENGSKELSAALLE----------------------------SHENLKEVKI 192 (388)
T ss_pred --------HHhhhccCCCceEEEeccchhccCcHHHHHHHHH----------------------------hhcCceeEEe
Confidence 1111233456777777777665544433333333 3344555555
Q ss_pred CCCCCCchHHHHHHH-HHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHh-hCC
Q 008824 375 SYLNLEDDGTVAITN-ALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALE-QGH 452 (552)
Q Consensus 375 ~~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~-~~~ 452 (552)
-+|.|...|+..++. ++.. +.+|+.|||..|.++..+...++.++..|+.|+.|++..|-++..|+..+.+... ...
T Consensus 193 ~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~ 271 (388)
T COG5238 193 QQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFV 271 (388)
T ss_pred eecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcC
Confidence 555555554443322 2322 4566666666666666666666666666666777777777666666666655543 135
Q ss_pred CCccEEEccCCCCCHHHHHH--HHHHH-hcCCCccEEEecCCCCCHHH--HHHHHHHHhc
Q 008824 453 DQLKVVDMSSNFIRRAGARQ--LAQVV-IQKPGFKQLNIDANIISEEG--IDEVKEIFKN 507 (552)
Q Consensus 453 ~~L~~L~Ls~n~i~~~g~~~--l~~~l-~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~ 507 (552)
++|+.|-..+|.+....+.. +.... ...|-|..|.+.+|+|.+.. ...+.+.+..
T Consensus 272 p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~~d~~~~if~~ 331 (388)
T COG5238 272 PNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADFGDYYEDIFEV 331 (388)
T ss_pred CCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHHHHHHHHHhhh
Confidence 66666666666543222111 11211 13567888888999998643 4445555543
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.6e-22 Score=233.17 Aligned_cols=206 Identities=19% Similarity=0.177 Sum_probs=94.7
Q ss_pred ccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCch
Q 008824 131 STADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPE 210 (552)
Q Consensus 131 ~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~ 210 (552)
....+++++++++..... .+... .++|+.|++++|.+.......+.. ..+|++|+|++|.+....
T Consensus 116 ~l~~L~~L~Ls~n~l~~~---------~p~~~-l~~L~~L~Ls~n~~~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGS---------IPRGS-IPNLETLDLSNNMLSGEIPNDIGS-----FSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred cCCCCCEEECcCCccccc---------cCccc-cCCCCEEECcCCcccccCChHHhc-----CCCCCEEECccCcccccC
Confidence 456777788777543210 00111 256777777777664322222221 256677777666654333
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 008824 211 AEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQF 290 (552)
Q Consensus 211 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 290 (552)
+..+..+ ++|++|+|++|.+... ++..+..+++|+.|+|++|.+++..+..+ ..+++|++|++
T Consensus 181 p~~~~~l---------~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L 243 (968)
T PLN00113 181 PNSLTNL---------TSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGEIPYEI----GGLTSLNHLDL 243 (968)
T ss_pred ChhhhhC---------cCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCcCChhH----hcCCCCCEEEC
Confidence 3333332 4566666666555432 22233334555555555555543322222 23345555555
Q ss_pred ccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCccc
Q 008824 291 HNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLT 370 (552)
Q Consensus 291 s~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~ 370 (552)
++|.+.. .++..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.+... ++..+..+++|+
T Consensus 244 ~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~ 311 (968)
T PLN00113 244 VYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGP----IPPSIFSLQKLISLDLSDNSLSGE----IPELVIQLQNLE 311 (968)
T ss_pred cCceecc----ccChhHhCCCCCCEEECcCCeeecc----CchhHhhccCcCEEECcCCeeccC----CChhHcCCCCCc
Confidence 5554432 1333444445555555555544322 233334444444444444444322 233333444444
Q ss_pred EEecCCCCCC
Q 008824 371 EVYLSYLNLE 380 (552)
Q Consensus 371 ~L~L~~n~l~ 380 (552)
.|++++|.+.
T Consensus 312 ~L~l~~n~~~ 321 (968)
T PLN00113 312 ILHLFSNNFT 321 (968)
T ss_pred EEECCCCccC
Confidence 4444444433
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.9e-22 Score=232.70 Aligned_cols=183 Identities=17% Similarity=0.152 Sum_probs=87.3
Q ss_pred ccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCch
Q 008824 131 STADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPE 210 (552)
Q Consensus 131 ~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~ 210 (552)
..+.+++++++++.... .+...+... ++|+.|++++|.+.......+.. ..+|++|+|++|.+....
T Consensus 138 ~l~~L~~L~Ls~n~~~~-------~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~ 204 (968)
T PLN00113 138 SIPNLETLDLSNNMLSG-------EIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTN-----LTSLEFLTLASNQLVGQI 204 (968)
T ss_pred ccCCCCEEECcCCcccc-------cCChHHhcC-CCCCEEECccCcccccCChhhhh-----CcCCCeeeccCCCCcCcC
Confidence 35667888888765431 112223333 67777888777764322222222 266777777777665443
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 008824 211 AEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQF 290 (552)
Q Consensus 211 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 290 (552)
+..+..+ .+|++|+|++|.+... ++..+..+++|++|++++|.+++..+.. +..+++|++|++
T Consensus 205 p~~l~~l---------~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L 267 (968)
T PLN00113 205 PRELGQM---------KSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNLTGPIPSS----LGNLKNLQYLFL 267 (968)
T ss_pred ChHHcCc---------CCccEEECcCCccCCc----CChhHhcCCCCCEEECcCceeccccChh----HhCCCCCCEEEC
Confidence 3333332 4566666666655432 2222333455555555555554332222 223345555555
Q ss_pred ccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCC
Q 008824 291 HNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMF 351 (552)
Q Consensus 291 s~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 351 (552)
++|.+.. .++..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.+
T Consensus 268 ~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 268 YQNKLSG----PIPPSIFSLQKLISLDLSDNSLSGE----IPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred cCCeeec----cCchhHhhccCcCEEECcCCeeccC----CChhHcCCCCCcEEECCCCcc
Confidence 5554432 1223333344444444444444322 233333444444444444443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.3e-24 Score=212.67 Aligned_cols=316 Identities=20% Similarity=0.212 Sum_probs=188.5
Q ss_pred CccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHH
Q 008824 134 DVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEA 213 (552)
Q Consensus 134 ~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~ 213 (552)
..+.+|++.+.+.-++.+.+..+ ++|+++++.+|.++..+- +.....+|+.|+|.+|.+.....+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl--------~nLq~v~l~~N~Lt~IP~------f~~~sghl~~L~L~~N~I~sv~se~ 144 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNL--------PNLQEVNLNKNELTRIPR------FGHESGHLEKLDLRHNLISSVTSEE 144 (873)
T ss_pred ceeeeeccccccccCcHHHHhcC--------Ccceeeeeccchhhhccc------ccccccceeEEeeeccccccccHHH
Confidence 34678888887776665554443 778888888777753211 1111256788888888777766665
Q ss_pred HHHHHHHHHH------h---------cCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHh
Q 008824 214 LEVMAIFSAA------L---------EGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCEL 278 (552)
Q Consensus 214 l~~l~~~~~~------l---------~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 278 (552)
|..+..+..+ + ...+|++|+|++|.|++.+...|..+ .+|..|.|++|+|+......+.
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNrittLp~r~Fk-- 218 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRITTLPQRSFK-- 218 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc----chheeeecccCcccccCHHHhh--
Confidence 5544322211 1 12588899999998888777777665 6888888999888776555443
Q ss_pred cCCCCCccEEEcccCCCChH-HHH--HHHH-----------------HhhcCCCccEEEeeCCCCChHHHHHHHHHhhcC
Q 008824 279 IPSTEKLRVLQFHNNMTGDE-GAQ--AISD-----------------VVKHSPLLEDFRCSSTRIGSEGGTALSEALESC 338 (552)
Q Consensus 279 l~~~~~L~~L~Ls~n~l~~~-g~~--~l~~-----------------~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~ 338 (552)
++++|+.|+|..|+|... |.. .++. ++-.+.++++|+|+.|++... --.++..+
T Consensus 219 --~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgL 292 (873)
T KOG4194|consen 219 --RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGL 292 (873)
T ss_pred --hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh----hccccccc
Confidence 347888888888877532 100 0000 012233455555555555432 11234456
Q ss_pred CCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHH
Q 008824 339 THLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISA 418 (552)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 418 (552)
+.|+.|+|++|.|..-. ++.+..+++|++|+|++|.|+......+.. +..|++|+|+.|.++...-..+
T Consensus 293 t~L~~L~lS~NaI~rih----~d~WsftqkL~~LdLs~N~i~~l~~~sf~~-----L~~Le~LnLs~Nsi~~l~e~af-- 361 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIH----IDSWSFTQKLKELDLSSNRITRLDEGSFRV-----LSQLEELNLSHNSIDHLAEGAF-- 361 (873)
T ss_pred chhhhhccchhhhheee----cchhhhcccceeEeccccccccCChhHHHH-----HHHhhhhcccccchHHHHhhHH--
Confidence 66666666666655422 345566677777777777666544433332 4566777777776654322222
Q ss_pred HhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008824 419 CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 419 ~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
....+|++|||+.|.|+-. +..-+.++. +++.|+.|++.||+|....-+ ++.+++.|++|||.+|.|.
T Consensus 362 --~~lssL~~LdLr~N~ls~~-IEDaa~~f~-gl~~LrkL~l~gNqlk~I~kr----Afsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 362 --VGLSSLHKLDLRSNELSWC-IEDAAVAFN-GLPSLRKLRLTGNQLKSIPKR----AFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred --HHhhhhhhhcCcCCeEEEE-Eecchhhhc-cchhhhheeecCceeeecchh----hhccCcccceecCCCCcce
Confidence 2236788888888864310 000122333 677888888888877654333 3445788888888888764
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.1e-23 Score=208.51 Aligned_cols=307 Identities=20% Similarity=0.228 Sum_probs=159.3
Q ss_pred cEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHH
Q 008824 136 TLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALE 215 (552)
Q Consensus 136 ~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~ 215 (552)
..||+++..+.-++.... .++ ..+.-+.|++++|.+.......+... ++|++++|..|.+.+.+.-+-.
T Consensus 55 ~lldcs~~~lea~~~~~l----~g~--lp~~t~~LdlsnNkl~~id~~~f~nl-----~nLq~v~l~~N~Lt~IP~f~~~ 123 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRL----KGF--LPSQTQTLDLSNNKLSHIDFEFFYNL-----PNLQEVNLNKNELTRIPRFGHE 123 (873)
T ss_pred eeeecCcccccccccccc----CCc--CccceeeeeccccccccCcHHHHhcC-----Ccceeeeeccchhhhccccccc
Confidence 568888865443221111 111 11456689999999987766655554 8999999999988765421111
Q ss_pred HHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCC
Q 008824 216 VMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMT 295 (552)
Q Consensus 216 ~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 295 (552)
..+|++|+|.+|.|+......+..+ +.|++|+|+.|.|+..... .+....++++|+|++|.|
T Consensus 124 ----------sghl~~L~L~~N~I~sv~se~L~~l----~alrslDLSrN~is~i~~~----sfp~~~ni~~L~La~N~I 185 (873)
T KOG4194|consen 124 ----------SGHLEKLDLRHNLISSVTSEELSAL----PALRSLDLSRNLISEIPKP----SFPAKVNIKKLNLASNRI 185 (873)
T ss_pred ----------ccceeEEeeeccccccccHHHHHhH----hhhhhhhhhhchhhcccCC----CCCCCCCceEEeeccccc
Confidence 1578899999998876554444443 5666666666666432211 112234666666666666
Q ss_pred ChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHH------HH-----------
Q 008824 296 GDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAG------VA----------- 358 (552)
Q Consensus 296 ~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~------~~----------- 358 (552)
++.+...+ ..+.+|.+|.|+.|+++.-. ...+..++.|+.|+|..|.+....+ ..
T Consensus 186 t~l~~~~F----~~lnsL~tlkLsrNrittLp----~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 186 TTLETGHF----DSLNSLLTLKLSRNRITTLP----QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred cccccccc----cccchheeeecccCcccccC----HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 65333322 23345566666666655421 1233335555555555555432100 00
Q ss_pred --------------------------H-HHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcc
Q 008824 359 --------------------------L-SKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVE 411 (552)
Q Consensus 359 --------------------------L-~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 411 (552)
+ ..++..++.|+.|++++|.|....+.... -++.|+.|+|++|.|+..
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-----ftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-----FTQKLKELDLSSNRITRL 332 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-----hcccceeEeccccccccC
Confidence 0 01222333333344444433332221111 134555555555555544
Q ss_pred hHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008824 412 AAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 412 ~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
...++..+ ..|++|+|+.|.|+. ++++--...++|++|||++|.|+.. +..-+.++..++.|+.|.|.||
T Consensus 333 ~~~sf~~L----~~Le~LnLs~Nsi~~-----l~e~af~~lssL~~LdLr~N~ls~~-IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 333 DEGSFRVL----SQLEELNLSHNSIDH-----LAEGAFVGLSSLHKLDLRSNELSWC-IEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred ChhHHHHH----HHhhhhcccccchHH-----HHhhHHHHhhhhhhhcCcCCeEEEE-EecchhhhccchhhhheeecCc
Confidence 44444333 455555555555432 2222111566777777777765321 1112334455777777777777
Q ss_pred CCC
Q 008824 492 IIS 494 (552)
Q Consensus 492 ~i~ 494 (552)
+|.
T Consensus 403 qlk 405 (873)
T KOG4194|consen 403 QLK 405 (873)
T ss_pred eee
Confidence 764
No 11
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.83 E-value=2.3e-19 Score=164.29 Aligned_cols=242 Identities=24% Similarity=0.314 Sum_probs=166.8
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCC---h---HHHHHHHHHhhcCCCccEEEeeCCCCChHHH
Q 008824 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTG---D---EGAQAISDVVKHSPLLEDFRCSSTRIGSEGG 328 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~---~---~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~ 328 (552)
..++.++|++|.|+..+...++..+.+-.+|+..+++.-..+ + .....+.+.+-+||.|+..+||.|-++....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 444444444444444444444444444444444444433221 1 1122334445556666666666666665555
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHH---------ccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCcc
Q 008824 329 TALSEALESCTHLKKLDLRDNMFGVEAGVALSKAL---------SNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLE 399 (552)
Q Consensus 329 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l---------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~ 399 (552)
..+...|++.+.|.+|.+++|.+++.+...+.+++ ..-|.|+.+....|++........+..+.. ...|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s-h~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES-HENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh-hcCce
Confidence 55555666666666666666666665555555443 345789999999999988766666666665 37899
Q ss_pred EEEccCCCCCcchHHHHH-HHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHh
Q 008824 400 VLELAGNDITVEAAPVIS-ACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVI 478 (552)
Q Consensus 400 ~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~ 478 (552)
++.+..|.|...+...++ ..+.++.+|+.|+|+.|.++-.|-..++.++. ..+.|++|.+..|-++..|...+.+.+.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~-~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC-EWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc-ccchhhhccccchhhccccHHHHHHHhh
Confidence 999999999998876654 33566799999999999999999999999999 8888999999999999999999988875
Q ss_pred --cCCCccEEEecCCCCCHHHH
Q 008824 479 --QKPGFKQLNIDANIISEEGI 498 (552)
Q Consensus 479 --~~~~L~~L~L~~N~i~~~g~ 498 (552)
..|+|..|...+|.+....+
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred hhcCCCccccccchhhhcCcee
Confidence 46889999998887654433
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=5.4e-22 Score=199.65 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=68.5
Q ss_pred HHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCch
Q 008824 303 ISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDD 382 (552)
Q Consensus 303 l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~ 382 (552)
+|..+..+.+|..+|+|.|.+.. +|+.+..+++|+.|+||+|.++. +......+.+|++|+|+.|.++.
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~ite-----L~~~~~~W~~lEtLNlSrNQLt~- 282 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITE-----LNMTEGEWENLETLNLSRNQLTV- 282 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceee-----eeccHHHHhhhhhhccccchhcc-
Confidence 33334444444444444444433 34444444444444444444443 22233333444444444444443
Q ss_pred HHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccC
Q 008824 383 GTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSS 462 (552)
Q Consensus 383 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~ 462 (552)
++.++.. ++.|+.|.+.+|.++-++. ...++...+|+.+..++|.+. .++++|. .|..|+.|.|++
T Consensus 283 ----LP~avcK-L~kL~kLy~n~NkL~FeGi---PSGIGKL~~Levf~aanN~LE-----lVPEglc-RC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 283 ----LPDAVCK-LTKLTKLYANNNKLTFEGI---PSGIGKLIQLEVFHAANNKLE-----LVPEGLC-RCVKLQKLKLDH 348 (1255)
T ss_pred ----chHHHhh-hHHHHHHHhccCcccccCC---ccchhhhhhhHHHHhhccccc-----cCchhhh-hhHHHHHhcccc
Confidence 1222211 3444444444444433321 111222244444444444432 2234444 555555555555
Q ss_pred CCCCHHHHHHHHHHHhcCCCccEEEecCCC
Q 008824 463 NFIRRAGARQLAQVVIQKPGFKQLNIDANI 492 (552)
Q Consensus 463 n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~ 492 (552)
|++-. +++++.-++.|+.||+++|+
T Consensus 349 NrLiT-----LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 349 NRLIT-----LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cceee-----chhhhhhcCCcceeeccCCc
Confidence 55422 44555555555555555553
No 13
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.77 E-value=1.1e-18 Score=180.88 Aligned_cols=369 Identities=24% Similarity=0.320 Sum_probs=231.9
Q ss_pred cEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHH
Q 008824 136 TLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALE 215 (552)
Q Consensus 136 ~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~ 215 (552)
..+++.+.... ...+..+.+++... .++..|++++|.++..++..++..+....+.++.|.+..|.++......+.
T Consensus 90 ~~L~L~~~~l~---~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 90 LHLSLANNRLG---DRGAEELAQALKTL-PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHhhhhhCccc---cchHHHHHHHhccc-ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 44444444322 22444555555555 666777777777776666666666655335666666666666554332221
Q ss_pred HHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhc----CCCccEEEeeCCCCCHHHHHHHHHhcCCCCC-ccEEEc
Q 008824 216 VMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLES----QSSLEELYLMNDGISKEAARAVCELIPSTEK-LRVLQF 290 (552)
Q Consensus 216 ~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~----~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~L 290 (552)
....++..++.++++.|.+...+...++..+.. ..++++|.+++|.++...+..+...+...+. +.+|++
T Consensus 166 -----~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 166 -----AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred -----HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 111124566777777776666666666666654 4557777777777776666666666666555 666777
Q ss_pred ccCCCChHHHHHHHHHhhcC-CCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcc
Q 008824 291 HNNMTGDEGAQAISDVVKHS-PLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADL 369 (552)
Q Consensus 291 s~n~l~~~g~~~l~~~l~~~-~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L 369 (552)
.+|.+++.|+..+.+.+... +.++.++++.|.|++.+...+++.+..+++++.|.++.|.++..+...+...+.....+
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~ 320 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPL 320 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccc
Confidence 77777776777666666666 56677777777777777777777777777777777777777766666666666666666
Q ss_pred cEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcC-CCcCEEEccCCCCCchHHHHHHHHH
Q 008824 370 TEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAK-QHLTKLNLAENELKDDGAIQISKAL 448 (552)
Q Consensus 370 ~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~d~g~~~l~~~L 448 (552)
..+.+.++.....+...+..........+.....+++...+.....+......- +.+..+++..+.+.+.+...++..+
T Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 400 (478)
T KOG4308|consen 321 LHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQL 400 (478)
T ss_pred hhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhh
Confidence 666666555444433322222111122333344444445444444443333322 2366777777777777777777777
Q ss_pred hhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhcCcccccc
Q 008824 449 EQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDMLES 514 (552)
Q Consensus 449 ~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~~~l~~ 514 (552)
. .+..+..++++.|...+.+...++.....+-.+..+.++.|+|+..|..+..+....++.....
T Consensus 401 ~-~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (478)
T KOG4308|consen 401 A-SNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNPGILAI 465 (478)
T ss_pred h-hcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCCCccee
Confidence 7 7888888888888888888888887777766888888888888888888888887777555443
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.3e-20 Score=188.02 Aligned_cols=273 Identities=22% Similarity=0.278 Sum_probs=211.8
Q ss_pred ccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCch
Q 008824 131 STADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPE 210 (552)
Q Consensus 131 ~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~ 210 (552)
....++++|||.+... .....|... ++.-.|+||+|+|.......+..+ ..|-.||||+|.+...+
T Consensus 101 ~l~dLt~lDLShNqL~--------EvP~~LE~A-Kn~iVLNLS~N~IetIPn~lfinL-----tDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR--------EVPTNLEYA-KNSIVLNLSYNNIETIPNSLFINL-----TDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred ccccceeeecchhhhh--------hcchhhhhh-cCcEEEEcccCccccCCchHHHhh-----HhHhhhccccchhhhcC
Confidence 4456699999987643 445556555 788999999999976666555554 67889999999987665
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 008824 211 AEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQF 290 (552)
Q Consensus 211 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 290 (552)
+..- .+ ..|+.|+||+|.+..-.++.++.+ ++|..|.+++++-+- ..+...+..+.+|..++|
T Consensus 167 PQ~R-RL---------~~LqtL~Ls~NPL~hfQLrQLPsm----tsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 167 PQIR-RL---------SMLQTLKLSNNPLNHFQLRQLPSM----TSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred HHHH-HH---------hhhhhhhcCCChhhHHHHhcCccc----hhhhhhhcccccchh---hcCCCchhhhhhhhhccc
Confidence 5432 22 589999999999988777777666 889999999876432 223333344579999999
Q ss_pred ccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCccc
Q 008824 291 HNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLT 370 (552)
Q Consensus 291 s~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~ 370 (552)
|.|.+.. +|+.+-.+++|+.|+||+|+|+. +....+.-.+|+.|+||.|+++. ++.++.+++.|+
T Consensus 230 S~N~Lp~-----vPecly~l~~LrrLNLS~N~ite-----L~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 230 SENNLPI-----VPECLYKLRNLRRLNLSGNKITE-----LNMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLT 294 (1255)
T ss_pred cccCCCc-----chHHHhhhhhhheeccCcCceee-----eeccHHHHhhhhhhccccchhcc-----chHHHhhhHHHH
Confidence 9999987 89999999999999999999986 33334445689999999999987 799999999999
Q ss_pred EEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhh
Q 008824 371 EVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQ 450 (552)
Q Consensus 371 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~ 450 (552)
.|++.+|+++-+|+. .++.. +..|++++.++|.+.- .++.+++| ..|+.|.|+.|.+- .+++++-
T Consensus 295 kLy~n~NkL~FeGiP---SGIGK-L~~Levf~aanN~LEl-VPEglcRC----~kL~kL~L~~NrLi-----TLPeaIH- 359 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIP---SGIGK-LIQLEVFHAANNKLEL-VPEGLCRC----VKLQKLKLDHNRLI-----TLPEAIH- 359 (1255)
T ss_pred HHHhccCcccccCCc---cchhh-hhhhHHHHhhcccccc-Cchhhhhh----HHHHHhccccccee-----echhhhh-
Confidence 999999998876643 23322 5789999999988754 56666665 89999999999853 4577776
Q ss_pred CCCCccEEEccCCC
Q 008824 451 GHDQLKVVDMSSNF 464 (552)
Q Consensus 451 ~~~~L~~L~Ls~n~ 464 (552)
-++.|+.||+..|.
T Consensus 360 lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENP 373 (1255)
T ss_pred hcCCcceeeccCCc
Confidence 78999999999983
No 15
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.72 E-value=1.4e-17 Score=172.55 Aligned_cols=366 Identities=25% Similarity=0.277 Sum_probs=310.4
Q ss_pred hhhhhhhcccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEec
Q 008824 123 EELTSEKVSTADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLS 202 (552)
Q Consensus 123 ~~~~~~~~~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls 202 (552)
+.+.+.....+.++.++++++.+. .+.+..+...+..+.+.++.|++..|.++..++..++..+.. +..++.++++
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l~---~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~-~~~l~~l~l~ 180 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNLG---DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK-NEHLTELDLS 180 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCCc---cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc-ccchhHHHHH
Confidence 334566778888999999998754 788888888888865778999999999999999999999988 8999999999
Q ss_pred cccCCCchHHHHHHHHHHHH-HhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCC-ccEEEeeCCCCCHHHHHHHHHhcC
Q 008824 203 DFVAGRPEAEALEVMAIFSA-ALEGSVLKSLNLSDNALGEKGVRAFGALLESQSS-LEELYLMNDGISKEAARAVCELIP 280 (552)
Q Consensus 203 ~~~~~~~~~~~l~~l~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~ 280 (552)
.|.+...+...+ .+.+.. +...+++++|++++|.++...+..+...+..... +..|++.+|.+.+.+...+...+.
T Consensus 181 ~n~l~~~g~~~l--~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~ 258 (478)
T KOG4308|consen 181 LNGLIELGLLVL--SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS 258 (478)
T ss_pred hcccchhhhHHH--hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc
Confidence 998874332211 111222 2224799999999999999999999999988888 888999999999999999999988
Q ss_pred CC-CCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHH-HH
Q 008824 281 ST-EKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAG-VA 358 (552)
Q Consensus 281 ~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-~~ 358 (552)
.. +.+++++++.|.|++.|...+++.+..++.++.+.++.|.+++.+...+.+.+.....+.++.+.++.....+. ..
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 338 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSV 338 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHH
Confidence 87 89999999999999999999999999999999999999999999999999999998899999998776554443 33
Q ss_pred HHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCc
Q 008824 359 LSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKD 438 (552)
Q Consensus 359 L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d 438 (552)
+.........+....++++...+.+...+..+...+-..+..+++..+.+...+...++..+..+..+..++++.|...+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~ 418 (478)
T KOG4308|consen 339 LAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHD 418 (478)
T ss_pred HHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccch
Confidence 44444445556667778888888888888777766656688889988888888889999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008824 439 DGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 439 ~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
+++..+..... .+..++.++++.|.++..|.....+.....+..+..-+..|.|+.
T Consensus 419 ~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 419 EGAEVLTEQLS-RNGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIGR 474 (478)
T ss_pred hhHHHHHHhhh-hcccchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCcccc
Confidence 99999999888 444999999999999999999999999999999999999998864
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=3.2e-16 Score=170.83 Aligned_cols=263 Identities=20% Similarity=0.267 Sum_probs=186.1
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008824 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
.+.+.|++++++++.... .++.+|+.|+|++|.+...+.... .+|+.|++++|+++..
T Consensus 178 ~~~~~L~L~~~~LtsLP~--------~Ip~~L~~L~Ls~N~LtsLP~~l~------------~nL~~L~Ls~N~LtsL-- 235 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA--------CIPEQITTLILDNNELKSLPENLQ------------GNIKTLYANSNQLTSI-- 235 (754)
T ss_pred cCceEEEeCCCCcCcCCc--------ccccCCcEEEecCCCCCcCChhhc------------cCCCEEECCCCccccC--
Confidence 457889999988863221 224689999999998876533211 5899999999988752
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008824 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
+..+ ..+|+.|+|++|.+... +..+ ..+|+.|++++|.+.. ++..+ .++|+.|++++|+++
T Consensus 236 ---P~~l--~~~L~~L~Ls~N~L~~L-P~~l------~s~L~~L~Ls~N~L~~-----LP~~l--~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 236 ---PATL--PDTIQEMELSINRITEL-PERL------PSALQSLDLFHNKISC-----LPENL--PEELRYLSVYDNSIR 296 (754)
T ss_pred ---Chhh--hccccEEECcCCccCcC-ChhH------hCCCCEEECcCCccCc-----ccccc--CCCCcEEECCCCccc
Confidence 2222 24799999999998743 2222 2479999999998875 55433 258999999999987
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEcc
Q 008824 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELA 404 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 404 (552)
. ++..+. ++|+.|++++|.++. ++..+ .++|+.|++++|.++.. ...+ .++|+.|+++
T Consensus 297 ~-----LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~L-----P~~l---~~sL~~L~Ls 354 (754)
T PRK15370 297 T-----LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTSL-----PASL---PPELQVLDVS 354 (754)
T ss_pred c-----Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCccccC-----Chhh---cCcccEEECC
Confidence 4 333222 478899999999875 33322 36899999999988752 2222 3689999999
Q ss_pred CCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCcc
Q 008824 405 GNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFK 484 (552)
Q Consensus 405 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~ 484 (552)
+|.++. .+..+ .++|+.|+|++|.|+. ++..+. ..|+.|++++|.++.. ...++......+.+.
T Consensus 355 ~N~L~~-LP~~l------p~~L~~LdLs~N~Lt~-----LP~~l~---~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~ 418 (754)
T PRK15370 355 KNQITV-LPETL------PPTITTLDVSRNALTN-----LPENLP---AALQIMQASRNNLVRL-PESLPHFRGEGPQPT 418 (754)
T ss_pred CCCCCc-CChhh------cCCcCEEECCCCcCCC-----CCHhHH---HHHHHHhhccCCcccC-chhHHHHhhcCCCcc
Confidence 999875 22222 1689999999999874 222222 3688999999998742 123455555568899
Q ss_pred EEEecCCCCCHHHHHHHHHHHh
Q 008824 485 QLNIDANIISEEGIDEVKEIFK 506 (552)
Q Consensus 485 ~L~L~~N~i~~~g~~~l~~~l~ 506 (552)
.|++.+|+|+...+..+...+.
T Consensus 419 ~L~L~~Npls~~tl~~L~~Ll~ 440 (754)
T PRK15370 419 RIIVEYNPFSERTIQNMQRLMS 440 (754)
T ss_pred EEEeeCCCccHHHHHHHHHhhh
Confidence 9999999999888888766654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=4.3e-16 Score=168.95 Aligned_cols=269 Identities=17% Similarity=0.233 Sum_probs=190.9
Q ss_pred cCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchH
Q 008824 132 TADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEA 211 (552)
Q Consensus 132 ~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~ 211 (552)
......+|++......+ ...+ ..+++.|++++|.++.. ...+++|++|+|++|.+...+.
T Consensus 200 ~~~~~~LdLs~~~LtsL--------P~~l---~~~L~~L~L~~N~Lt~L---------P~lp~~Lk~LdLs~N~LtsLP~ 259 (788)
T PRK15387 200 NNGNAVLNVGESGLTTL--------PDCL---PAHITTLVIPDNNLTSL---------PALPPELRTLEVSGNQLTSLPV 259 (788)
T ss_pred cCCCcEEEcCCCCCCcC--------Ccch---hcCCCEEEccCCcCCCC---------CCCCCCCcEEEecCCccCcccC
Confidence 34456788888765422 1112 14688999999988632 1224789999999998875431
Q ss_pred HHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcc
Q 008824 212 EALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFH 291 (552)
Q Consensus 212 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 291 (552)
. .++|++|+|++|.+.. +... ...|+.|++++|+++... . ..++|+.|+|+
T Consensus 260 -l------------p~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~LP-----~---~p~~L~~LdLS 310 (788)
T PRK15387 260 -L------------PPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTSLP-----V---LPPGLQELSVS 310 (788)
T ss_pred -c------------ccccceeeccCCchhh-----hhhc---hhhcCEEECcCCcccccc-----c---cccccceeECC
Confidence 1 1588999999998764 3332 256889999999886431 1 23689999999
Q ss_pred cCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccE
Q 008824 292 NNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTE 371 (552)
Q Consensus 292 ~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~ 371 (552)
+|.+.. ++.. ...|+.|++++|.++. ++. -..+|+.|+|++|.|+. ++.. .++|+.
T Consensus 311 ~N~L~~-----Lp~l---p~~L~~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~ 366 (788)
T PRK15387 311 DNQLAS-----LPAL---PSELCKLWAYNNQLTS-----LPT---LPSGLQELSVSDNQLAS-----LPTL---PSELYK 366 (788)
T ss_pred CCcccc-----CCCC---cccccccccccCcccc-----ccc---cccccceEecCCCccCC-----CCCC---Ccccce
Confidence 998875 3331 2468889999998874 332 12479999999999885 3321 357888
Q ss_pred EecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhC
Q 008824 372 VYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQG 451 (552)
Q Consensus 372 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~ 451 (552)
|++++|.|.. +.. ...+|+.|++++|.|+.... . .++|+.|++++|.|+. ++. .
T Consensus 367 L~Ls~N~L~~-----LP~----l~~~L~~LdLs~N~Lt~LP~-----l---~s~L~~LdLS~N~Lss-----IP~----l 420 (788)
T PRK15387 367 LWAYNNRLTS-----LPA----LPSGLKELIVSGNRLTSLPV-----L---PSELKELMVSGNRLTS-----LPM----L 420 (788)
T ss_pred ehhhcccccc-----Ccc----cccccceEEecCCcccCCCC-----c---ccCCCEEEccCCcCCC-----CCc----c
Confidence 9999998875 221 13579999999999875321 1 2689999999999874 121 2
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHH
Q 008824 452 HDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEI 504 (552)
Q Consensus 452 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~ 504 (552)
..+|+.|++++|.|+. ++..+..++.|+.|+|++|++++.-...+.+.
T Consensus 421 ~~~L~~L~Ls~NqLt~-----LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 421 PSGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hhhhhhhhhccCcccc-----cChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 3468889999999974 67777789999999999999998877777554
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=7.9e-17 Score=169.92 Aligned_cols=226 Identities=24% Similarity=0.276 Sum_probs=141.0
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008824 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
.+|+++++++|++.. +++++..+.+|+.|.+.+|.++.... .+....+|+.|.+..|.+.. ++..
T Consensus 241 ~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~~lp~-----ri~~~~~L~~l~~~~nel~y-----ip~~ 305 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRLVALPL-----RISRITSLVSLSAAYNELEY-----IPPF 305 (1081)
T ss_pred ccceeeecchhhhhc-----chHHHHhcccceEecccchhHHhhHH-----HHhhhhhHHHHHhhhhhhhh-----CCCc
Confidence 477777777777665 44666666777777777777733221 12222455555555554443 4555
Q ss_pred hhcCCCccEEEeeCCCCChHHHH--HHHHH-----------------h--hcCCCCCEEecCCCCCChHHHHHHHHHHcc
Q 008824 307 VKHSPLLEDFRCSSTRIGSEGGT--ALSEA-----------------L--ESCTHLKKLDLRDNMFGVEAGVALSKALSN 365 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~--~l~~~-----------------l--~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~ 365 (552)
+...++|++|+|..|.|...... .++.. . ..++.|+.|++.+|.+++.. ...+..
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c----~p~l~~ 381 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC----FPVLVN 381 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc----hhhhcc
Confidence 55555566666655554432110 00000 0 11345777888888888764 456677
Q ss_pred CCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHH
Q 008824 366 YADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQIS 445 (552)
Q Consensus 366 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~ 445 (552)
.++|+.|+|+||+++......+. ++..|+.|+||||.++. |+..+..|+.|++|....|.|.. ++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~-----kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~~-----fP 446 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLR-----KLEELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLLS-----FP 446 (1081)
T ss_pred ccceeeeeecccccccCCHHHHh-----chHHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCceee-----ch
Confidence 88899999999988865444443 36788889999998875 22334444788888888887753 12
Q ss_pred HHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCC
Q 008824 446 KALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANI 492 (552)
Q Consensus 446 ~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~ 492 (552)
.+. ..+.|+.+|++.|.++... +..++. .|+|++|||+||.
T Consensus 447 -e~~-~l~qL~~lDlS~N~L~~~~---l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 447 -ELA-QLPQLKVLDLSCNNLSEVT---LPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred -hhh-hcCcceEEecccchhhhhh---hhhhCC-CcccceeeccCCc
Confidence 333 6888888888888887643 333332 3788888888887
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=3.9e-17 Score=157.30 Aligned_cols=276 Identities=18% Similarity=0.229 Sum_probs=162.3
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008824 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
..+.++.++.|.|....++..... +++..|||++|.+...+.+.. .+ .+|.+||+|+|.|+.
T Consensus 228 s~L~Elh~g~N~i~~lpae~~~~L-----~~l~vLDLRdNklke~Pde~c-lL---------rsL~rLDlSNN~is~--- 289 (565)
T KOG0472|consen 228 SLLKELHVGENQIEMLPAEHLKHL-----NSLLVLDLRDNKLKEVPDEIC-LL---------RSLERLDLSNNDISS--- 289 (565)
T ss_pred HHHHHHHhcccHHHhhHHHHhccc-----ccceeeeccccccccCchHHH-Hh---------hhhhhhcccCCcccc---
Confidence 555666666666654444433332 678888888888877654433 23 468888888888775
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHH-----------HHHHHHHhcC-----C---------------------CCCccE
Q 008824 245 RAFGALLESQSSLEELYLMNDGISKE-----------AARAVCELIP-----S---------------------TEKLRV 287 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~-----------~~~~l~~~l~-----~---------------------~~~L~~ 287 (552)
++..++++ +|+.|.+.+|.+... ..+.+...+. . ..+.+.
T Consensus 290 --Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 290 --LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred --CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 44556665 788888888875321 1122222110 0 012333
Q ss_pred EEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCC-CEEecCCCCCChHHHHHHHHHHccC
Q 008824 288 LQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHL-KKLDLRDNMFGVEAGVALSKALSNY 366 (552)
Q Consensus 288 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~l~~~~~~~L~~~l~~~ 366 (552)
|++++-+++..-.+.+ ++ .+-.-.+..+++.|++.. +|..+..+..+ +.+.+++|.++- ++..+..+
T Consensus 367 L~~s~~qlt~VPdEVf-ea-~~~~~Vt~VnfskNqL~e-----lPk~L~~lkelvT~l~lsnn~isf-----v~~~l~~l 434 (565)
T KOG0472|consen 367 LDVSDKQLTLVPDEVF-EA-AKSEIVTSVNFSKNQLCE-----LPKRLVELKELVTDLVLSNNKISF-----VPLELSQL 434 (565)
T ss_pred hcccccccccCCHHHH-HH-hhhcceEEEecccchHhh-----hhhhhHHHHHHHHHHHhhcCcccc-----chHHHHhh
Confidence 3333333332111111 00 111124445555555433 33333333322 234455555543 35567778
Q ss_pred CcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHH
Q 008824 367 ADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISK 446 (552)
Q Consensus 367 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~ 446 (552)
++|+.|+|++|.+.+- +..+.. +..|+.|+++.|.|.. +.+++.....|+.+-.++|+++...+.
T Consensus 435 ~kLt~L~L~NN~Ln~L-----P~e~~~-lv~Lq~LnlS~NrFr~-----lP~~~y~lq~lEtllas~nqi~~vd~~---- 499 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDL-----PEEMGS-LVRLQTLNLSFNRFRM-----LPECLYELQTLETLLASNNQIGSVDPS---- 499 (565)
T ss_pred hcceeeecccchhhhc-----chhhhh-hhhhheeccccccccc-----chHHHhhHHHHHHHHhccccccccChH----
Confidence 8888888888876652 222222 4568888888887643 233333336677777777887754433
Q ss_pred HHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008824 447 ALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 447 ~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
++. ++.+|..|||.+|.| ..++..++++.+|++|+++||+|.
T Consensus 500 ~l~-nm~nL~tLDL~nNdl-----q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLK-NMRNLTTLDLQNNDL-----QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Hhh-hhhhcceeccCCCch-----hhCChhhccccceeEEEecCCccC
Confidence 455 788999999999987 458888999999999999999987
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=1.9e-15 Score=159.60 Aligned_cols=188 Identities=24% Similarity=0.318 Sum_probs=101.2
Q ss_pred CCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhc-----------------------C
Q 008824 282 TEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALES-----------------------C 338 (552)
Q Consensus 282 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~-----------------------~ 338 (552)
..+|+.+++++|++.. +++.+..|.+|+.++..+|++.. ++..+.. .
T Consensus 240 p~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~~-----lp~ri~~~~~L~~l~~~~nel~yip~~le~~ 309 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRLVA-----LPLRISRITSLVSLSAAYNELEYIPPFLEGL 309 (1081)
T ss_pred cccceeeecchhhhhc-----chHHHHhcccceEecccchhHHh-----hHHHHhhhhhHHHHHhhhhhhhhCCCccccc
Confidence 4567777777777765 66777777788888777777643 2322222 3
Q ss_pred CCCCEEecCCCCCChHHHH--HHH-H---HH---------------ccCCcccEEecCCCCCCchHHHHHHHHHhcCCCC
Q 008824 339 THLKKLDLRDNMFGVEAGV--ALS-K---AL---------------SNYADLTEVYLSYLNLEDDGTVAITNALKGSAPL 397 (552)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~~~--~L~-~---~l---------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~ 397 (552)
++|++|+|..|++..-..- .+. . .+ ..++.|+.|++.+|.+++..+..+. +..+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-----~~~h 384 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-----NFKH 384 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-----cccc
Confidence 4455555555554321000 000 0 00 0012344445555555554433332 2455
Q ss_pred ccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHH
Q 008824 398 LEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVV 477 (552)
Q Consensus 398 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l 477 (552)
|+.|+|++|.++.-....+.+ +..|++|+||+|.++ .|+..+. .++.|++|...+|+|.. ++ -+
T Consensus 385 LKVLhLsyNrL~~fpas~~~k----le~LeeL~LSGNkL~-----~Lp~tva-~~~~L~tL~ahsN~l~~-----fP-e~ 448 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRK----LEELEELNLSGNKLT-----TLPDTVA-NLGRLHTLRAHSNQLLS-----FP-EL 448 (1081)
T ss_pred eeeeeecccccccCCHHHHhc----hHHhHHHhcccchhh-----hhhHHHH-hhhhhHHHhhcCCceee-----ch-hh
Confidence 666666666555433333322 255666666666554 2333343 55666666666665533 34 24
Q ss_pred hcCCCccEEEecCCCCCHHHHHH
Q 008824 478 IQKPGFKQLNIDANIISEEGIDE 500 (552)
Q Consensus 478 ~~~~~L~~L~L~~N~i~~~g~~~ 500 (552)
...+.|+.+|++.|.++...+.+
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhh
Confidence 45889999999999997655443
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=2.3e-17 Score=158.88 Aligned_cols=256 Identities=23% Similarity=0.273 Sum_probs=151.8
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 008824 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAAR 273 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 273 (552)
..++.|++++|.+...++.+-+. ..++.|+.++|++.. ++..+.+..+|.+|+.+.|.+.... .
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l----------~~l~~l~vs~n~ls~-----lp~~i~s~~~l~~l~~s~n~~~el~-~ 131 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGEL----------EALKSLNVSHNKLSE-----LPEQIGSLISLVKLDCSSNELKELP-D 131 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHH----------HHHHHhhcccchHhh-----ccHHHhhhhhhhhhhccccceeecC-c
Confidence 45566666666555443332221 245556666665554 2333333456666666666553221 1
Q ss_pred HHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 008824 274 AVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGV 353 (552)
Q Consensus 274 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 353 (552)
.++. +..|..|+..+|++.. ++..+..+.++..+++.+|++.. +++..-.++.|++||...|.++.
T Consensus 132 ~i~~----~~~l~dl~~~~N~i~s-----lp~~~~~~~~l~~l~~~~n~l~~-----l~~~~i~m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 132 SIGR----LLDLEDLDATNNQISS-----LPEDMVNLSKLSKLDLEGNKLKA-----LPENHIAMKRLKHLDCNSNLLET 197 (565)
T ss_pred hHHH----Hhhhhhhhcccccccc-----CchHHHHHHHHHHhhccccchhh-----CCHHHHHHHHHHhcccchhhhhc
Confidence 2222 2356666666666665 55556666667777777776654 34444446677777777777665
Q ss_pred HHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccC
Q 008824 354 EAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAE 433 (552)
Q Consensus 354 ~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 433 (552)
++..++.+.+|..|++.+|++.. ++ .+ ..|..|.+|+++.|.|.-..++. ++..++|..|||+.
T Consensus 198 -----lP~~lg~l~~L~~LyL~~Nki~~-----lP-ef-~gcs~L~Elh~g~N~i~~lpae~----~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 198 -----LPPELGGLESLELLYLRRNKIRF-----LP-EF-PGCSLLKELHVGENQIEMLPAEH----LKHLNSLLVLDLRD 261 (565)
T ss_pred -----CChhhcchhhhHHHHhhhccccc-----CC-CC-CccHHHHHHHhcccHHHhhHHHH----hcccccceeeeccc
Confidence 56677777777777777777654 22 11 22566777777777765422222 23447788888888
Q ss_pred CCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC-------HHHHHHHHHHHh
Q 008824 434 NELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS-------EEGIDEVKEIFK 506 (552)
Q Consensus 434 n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~-------~~g~~~l~~~l~ 506 (552)
|+++.. +..+. .+++|..||+|+|.|+. ++-.++++ +|+.|.+.||++. ..|.+++.+.++
T Consensus 262 Nklke~-----Pde~c-lLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 262 NKLKEV-----PDEIC-LLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR 329 (565)
T ss_pred cccccC-----chHHH-HhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH
Confidence 877632 33333 56778888888888765 55556666 8888888888864 245556655555
Q ss_pred c
Q 008824 507 N 507 (552)
Q Consensus 507 ~ 507 (552)
.
T Consensus 330 s 330 (565)
T KOG0472|consen 330 S 330 (565)
T ss_pred H
Confidence 4
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=1.9e-14 Score=157.01 Aligned_cols=259 Identities=17% Similarity=0.187 Sum_probs=179.0
Q ss_pred cCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchH
Q 008824 132 TADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEA 211 (552)
Q Consensus 132 ~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~ 211 (552)
....+.+++++.+...+. ..+ .++++.|++++|.++..... ...+|+.|++++|.+...+.
T Consensus 177 ~~~~~~L~L~~~~LtsLP--------~~I---p~~L~~L~Ls~N~LtsLP~~--------l~~nL~~L~Ls~N~LtsLP~ 237 (754)
T PRK15370 177 KNNKTELRLKILGLTTIP--------ACI---PEQITTLILDNNELKSLPEN--------LQGNIKTLYANSNQLTSIPA 237 (754)
T ss_pred ccCceEEEeCCCCcCcCC--------ccc---ccCCcEEEecCCCCCcCChh--------hccCCCEEECCCCccccCCh
Confidence 345678888886544211 112 25799999999999743221 13689999999998875432
Q ss_pred HHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcc
Q 008824 212 EALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFH 291 (552)
Q Consensus 212 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 291 (552)
.+. ..|+.|+|++|.+... +..+ ..+|+.|++++|.|+.. +. .+ +++|+.|+++
T Consensus 238 -~l~-----------~~L~~L~Ls~N~L~~L-----P~~l--~s~L~~L~Ls~N~L~~L-P~----~l--~~sL~~L~Ls 291 (754)
T PRK15370 238 -TLP-----------DTIQEMELSINRITEL-----PERL--PSALQSLDLFHNKISCL-PE----NL--PEELRYLSVY 291 (754)
T ss_pred -hhh-----------ccccEEECcCCccCcC-----ChhH--hCCCCEEECcCCccCcc-cc----cc--CCCCcEEECC
Confidence 211 4799999999998752 2222 25799999999998742 11 12 2589999999
Q ss_pred cCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccE
Q 008824 292 NNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTE 371 (552)
Q Consensus 292 ~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~ 371 (552)
+|.+.. ++..+. ++|+.|++++|.+.. ++..+ .++|+.|++++|.++. ++..+. ++|+.
T Consensus 292 ~N~Lt~-----LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~ 350 (754)
T PRK15370 292 DNSIRT-----LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTS-----LPASLP--PELQV 350 (754)
T ss_pred CCcccc-----Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCcccc-----CChhhc--CcccE
Confidence 998875 443322 478999999999874 33322 3589999999999875 344443 78999
Q ss_pred EecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhC
Q 008824 372 VYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQG 451 (552)
Q Consensus 372 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~ 451 (552)
|++++|++.. ++..+ .+.|+.|++++|.++.. +..+. ..|+.|++++|.|+.- +..+..... .
T Consensus 351 L~Ls~N~L~~-----LP~~l---p~~L~~LdLs~N~Lt~L-P~~l~------~sL~~LdLs~N~L~~L-P~sl~~~~~-~ 413 (754)
T PRK15370 351 LDVSKNQITV-----LPETL---PPTITTLDVSRNALTNL-PENLP------AALQIMQASRNNLVRL-PESLPHFRG-E 413 (754)
T ss_pred EECCCCCCCc-----CChhh---cCCcCEEECCCCcCCCC-CHhHH------HHHHHHhhccCCcccC-chhHHHHhh-c
Confidence 9999999874 22222 25899999999998853 33332 3688999999998732 222333333 5
Q ss_pred CCCccEEEccCCCCCHHHHHHH
Q 008824 452 HDQLKVVDMSSNFIRRAGARQL 473 (552)
Q Consensus 452 ~~~L~~L~Ls~n~i~~~g~~~l 473 (552)
.+.+..|++.+|.++......+
T Consensus 414 ~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 414 GPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CCCccEEEeeCCCccHHHHHHH
Confidence 6889999999999986544443
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=1.7e-14 Score=156.55 Aligned_cols=245 Identities=19% Similarity=0.149 Sum_probs=177.7
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHH
Q 008824 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAE 212 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~ 212 (552)
..++.|++.++.+.. +....++|+.|++++|.++... ..+++|+.|+|++|.+...+.
T Consensus 222 ~~L~~L~L~~N~Lt~------------LP~lp~~Lk~LdLs~N~LtsLP---------~lp~sL~~L~Ls~N~L~~Lp~- 279 (788)
T PRK15387 222 AHITTLVIPDNNLTS------------LPALPPELRTLEVSGNQLTSLP---------VLPPGLLELSIFSNPLTHLPA- 279 (788)
T ss_pred cCCCEEEccCCcCCC------------CCCCCCCCcEEEecCCccCccc---------CcccccceeeccCCchhhhhh-
Confidence 467899999876442 3333488999999999997322 124789999999998754321
Q ss_pred HHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEccc
Q 008824 213 ALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHN 292 (552)
Q Consensus 213 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 292 (552)
.+ ..|+.|++++|+++.. +.. .++|+.|+|++|+|+... . ....|+.|++++
T Consensus 280 lp------------~~L~~L~Ls~N~Lt~L-----P~~---p~~L~~LdLS~N~L~~Lp-----~---lp~~L~~L~Ls~ 331 (788)
T PRK15387 280 LP------------SGLCKLWIFGNQLTSL-----PVL---PPGLQELSVSDNQLASLP-----A---LPSELCKLWAYN 331 (788)
T ss_pred ch------------hhcCEEECcCCccccc-----ccc---ccccceeECCCCccccCC-----C---Cccccccccccc
Confidence 11 4799999999998852 222 367999999999987531 1 134688999999
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEE
Q 008824 293 NMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEV 372 (552)
Q Consensus 293 n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L 372 (552)
|.++. ++.. ..+|+.|++++|+|.. ++. ...+|+.|++++|.++. ++.. ..+|+.|
T Consensus 332 N~L~~-----LP~l---p~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls~N~L~~-----LP~l---~~~L~~L 387 (788)
T PRK15387 332 NQLTS-----LPTL---PSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS-----LPAL---PSGLKEL 387 (788)
T ss_pred Ccccc-----cccc---ccccceEecCCCccCC-----CCC---CCcccceehhhcccccc-----Cccc---ccccceE
Confidence 99875 4432 2479999999999875 332 13578999999999875 3322 3579999
Q ss_pred ecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCC
Q 008824 373 YLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGH 452 (552)
Q Consensus 373 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~ 452 (552)
++++|.|.... . ..++|+.|++++|.++... . + ..+|+.|+|++|.|+. ++..+. .+
T Consensus 388 dLs~N~Lt~LP-----~----l~s~L~~LdLS~N~LssIP-~-l------~~~L~~L~Ls~NqLt~-----LP~sl~-~L 444 (788)
T PRK15387 388 IVSGNRLTSLP-----V----LPSELKELMVSGNRLTSLP-M-L------PSGLLSLSVYRNQLTR-----LPESLI-HL 444 (788)
T ss_pred EecCCcccCCC-----C----cccCCCEEEccCCcCCCCC-c-c------hhhhhhhhhccCcccc-----cChHHh-hc
Confidence 99999988521 1 1357999999999987532 1 1 1468899999999873 455565 78
Q ss_pred CCccEEEccCCCCCHHHHHHHH
Q 008824 453 DQLKVVDMSSNFIRRAGARQLA 474 (552)
Q Consensus 453 ~~L~~L~Ls~n~i~~~g~~~l~ 474 (552)
+.|+.|+|++|.++......+.
T Consensus 445 ~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 445 SSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred cCCCeEECCCCCCCchHHHHHH
Confidence 9999999999999976555553
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.42 E-value=2.5e-13 Score=132.18 Aligned_cols=255 Identities=16% Similarity=0.162 Sum_probs=149.1
Q ss_pred CCccEEEcCCC-CCCHHHHHHHHHHHhcCCCccEEEeeCCC-CCHHHHHHHHHhcCCCCCccEEEcccC-CCChHHHHHH
Q 008824 227 SVLKSLNLSDN-ALGEKGVRAFGALLESQSSLEELYLMNDG-ISKEAARAVCELIPSTEKLRVLQFHNN-MTGDEGAQAI 303 (552)
Q Consensus 227 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l 303 (552)
++|++|+|..| .+++..+..+++. |++|++|+++.|. |++.+.+.+. +.++.++.+.++++ .+. ...+
T Consensus 190 ~~l~~l~L~~c~~iT~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv~~~~---rG~~~l~~~~~kGC~e~~---le~l 260 (483)
T KOG4341|consen 190 RKLRHLNLHSCSSITDVSLKYLAEG---CRKLKYLNLSWCPQISGNGVQALQ---RGCKELEKLSLKGCLELE---LEAL 260 (483)
T ss_pred chhhhhhhcccchhHHHHHHHHHHh---hhhHHHhhhccCchhhcCcchHHh---ccchhhhhhhhccccccc---HHHH
Confidence 34555555553 4444444433333 4445555555443 3332222222 22233444444433 111 1222
Q ss_pred HHHhhcCCCccEEEeeCCC-CChHHHHHHHHHhhcCCCCCEEecCCCCC-ChHHHHHHHHHHccCCcccEEecCCC-CCC
Q 008824 304 SDVVKHSPLLEDFRCSSTR-IGSEGGTALSEALESCTHLKKLDLRDNMF-GVEAGVALSKALSNYADLTEVYLSYL-NLE 380 (552)
Q Consensus 304 ~~~l~~~~~L~~L~ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~L~~~l~~~~~L~~L~L~~n-~l~ 380 (552)
...-..+.-+..+++.+|. +++.++..+. ..+..|+.|+.+++.. ++.. +-..-.++++|+.|-++.+ +++
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~---~~c~~lq~l~~s~~t~~~d~~---l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIA---CGCHALQVLCYSSCTDITDEV---LWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHh---hhhhHhhhhcccCCCCCchHH---HHHHhcCCCceEEEeccccchhh
Confidence 2222334445555555554 6666644333 3456777777777653 3322 2223356678888888887 577
Q ss_pred chHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCC-CCchHHHHHHHHHhhCCCCccEEE
Q 008824 381 DDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENE-LKDDGAIQISKALEQGHDQLKVVD 459 (552)
Q Consensus 381 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~d~g~~~l~~~L~~~~~~L~~L~ 459 (552)
+.+...+. .++++|+.+++..+.....+ .|+.+-..|+.|+.|.|+.|. |+|+|+..+...-. ....|..+.
T Consensus 335 d~~ft~l~----rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c-~~~~l~~lE 407 (483)
T KOG4341|consen 335 DRGFTMLG----RNCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC-SLEGLEVLE 407 (483)
T ss_pred hhhhhhhh----cCChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc-cccccceee
Confidence 77766554 35678888888888754433 455555667888888888884 78888877766555 677888888
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCccEEEecCCC-CCHHHHHHHHHHHh
Q 008824 460 MSSNFIRRAGARQLAQVVIQKPGFKQLNIDANI-ISEEGIDEVKEIFK 506 (552)
Q Consensus 460 Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~-i~~~g~~~l~~~l~ 506 (552)
|+++..... +..+.+..++.|+.+++-++. ++.+++..++.-+.
T Consensus 408 L~n~p~i~d---~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 408 LDNCPLITD---ATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred ecCCCCchH---HHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 888865442 244455668888888888875 77888888777655
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.41 E-value=7.8e-13 Score=128.79 Aligned_cols=297 Identities=21% Similarity=0.260 Sum_probs=178.8
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCC-CCCHHH
Q 008824 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDN-ALGEKG 243 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n-~l~~~~ 243 (552)
.+++.+++..-....+ ..+...++......|+.|.++++.--. ...+.. +.+ .++++++|++.++ ++++..
T Consensus 110 ~~~q~idL~t~~rDv~-g~VV~~~~~Rcgg~lk~LSlrG~r~v~--~sslrt---~~~--~CpnIehL~l~gc~~iTd~s 181 (483)
T KOG4341|consen 110 SCWQHIDLFTFQRDVD-GGVVENMISRCGGFLKELSLRGCRAVG--DSSLRT---FAS--NCPNIEHLALYGCKKITDSS 181 (483)
T ss_pred ccceeeehhcchhcCC-CcceehHhhhhccccccccccccccCC--cchhhH---Hhh--hCCchhhhhhhcceeccHHH
Confidence 4566666655444333 223334444444667777777764322 122211 111 1367777777777 677766
Q ss_pred HHHHHHHHhcCCCccEEEeeCC-CCCHHHHHHHHHhcCCCCCccEEEcccC-CCChHHHHHHHHHhhcCCCccEEEeeCC
Q 008824 244 VRAFGALLESQSSLEELYLMND-GISKEAARAVCELIPSTEKLRVLQFHNN-MTGDEGAQAISDVVKHSPLLEDFRCSST 321 (552)
Q Consensus 244 ~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~ls~n 321 (552)
...++.. |+.|++|+|..| .|++...+.+.+. |++|++|+++.+ .++..|++.+.. .+..++.+.+.+|
T Consensus 182 ~~sla~~---C~~l~~l~L~~c~~iT~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC 252 (483)
T KOG4341|consen 182 LLSLARY---CRKLRHLNLHSCSSITDVSLKYLAEG---CRKLKYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGC 252 (483)
T ss_pred HHHHHHh---cchhhhhhhcccchhHHHHHHHHHHh---hhhHHHhhhccCchhhcCcchHHhc---cchhhhhhhhccc
Confidence 5555554 777888888774 4666666655544 577888888877 555556555544 3444666655555
Q ss_pred C-CChHHHHHHHHHhhcCCCCCEEecCCCC-CChHHHHHHHHHHccCCcccEEecCCC-CCCchHHHHHHHHHhcCCCCc
Q 008824 322 R-IGSEGGTALSEALESCTHLKKLDLRDNM-FGVEAGVALSKALSNYADLTEVYLSYL-NLEDDGTVAITNALKGSAPLL 398 (552)
Q Consensus 322 ~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L 398 (552)
. ++. ..+...-+.+.-+.++++..|. +++.++.. .-..+..|+.|+.+.+ .+++.....+. ..+.+|
T Consensus 253 ~e~~l---e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~---i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L 322 (483)
T KOG4341|consen 253 LELEL---EALLKAAAYCLEILKLNLQHCNQLTDEDLWL---IACGCHALQVLCYSSCTDITDEVLWALG----QHCHNL 322 (483)
T ss_pred ccccH---HHHHHHhccChHhhccchhhhccccchHHHH---HhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCce
Confidence 3 332 2344444556667777766654 56554322 2234566777777665 55555444443 346778
Q ss_pred cEEEccCCC-CCcchHHHHHHHhhcCCCcCEEEccCCCCCchH-HHHHHHHHhhCCCCccEEEccCC-CCCHHHHHHHHH
Q 008824 399 EVLELAGND-ITVEAAPVISACVAAKQHLTKLNLAENELKDDG-AIQISKALEQGHDQLKVVDMSSN-FIRRAGARQLAQ 475 (552)
Q Consensus 399 ~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g-~~~l~~~L~~~~~~L~~L~Ls~n-~i~~~g~~~l~~ 475 (552)
+.|.+++|. +++.+...++. .++.|+.+++..+..+-.+ +..++. +++.|+.|.|++| .|++.|+..+..
T Consensus 323 ~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~~~~~~d~tL~sls~----~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 323 QVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEECGLITDGTLASLSR----NCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred EEEeccccchhhhhhhhhhhc---CChhhhhhcccccceehhhhHhhhcc----CCchhccCChhhhhhhhhhhhhhhhh
Confidence 888888876 66666655543 3577888888877544333 333333 6788888888877 577777777776
Q ss_pred HHhcCCCccEEEecCCCCCH
Q 008824 476 VVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 476 ~l~~~~~L~~L~L~~N~i~~ 495 (552)
.-.....|..+.|++++...
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred ccccccccceeeecCCCCch
Confidence 66667778888888887443
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.5e-12 Score=120.02 Aligned_cols=201 Identities=19% Similarity=0.278 Sum_probs=115.1
Q ss_pred CccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCC-CChHHHHHHHHH
Q 008824 284 KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNM-FGVEAGVALSKA 362 (552)
Q Consensus 284 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~L~~~ 362 (552)
.|++|||++..|+. ..+-..++.|..|+.|.+.++++.+. ++..++.+.+|+.|+|+.+. |+..++ .-.
T Consensus 186 Rlq~lDLS~s~it~---stl~~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~---~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV---STLHGILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENAL---QLL 255 (419)
T ss_pred hhHHhhcchhheeH---HHHHHHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHH---HHH
Confidence 46666666655553 22334455566666666666666665 45555566666666666654 555442 333
Q ss_pred HccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCC-CCCchHH
Q 008824 363 LSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAEN-ELKDDGA 441 (552)
Q Consensus 363 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~d~g~ 441 (552)
+.+|+.|..|+|+.|.+..+.+..+...+ -++|+.|+|+|+.-.- ....++-+.+.|++|.+|||++| .+++.-+
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hi---se~l~~LNlsG~rrnl-~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHI---SETLTQLNLSGYRRNL-QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhh---chhhhhhhhhhhHhhh-hhhHHHHHHHhCCceeeeccccccccCchHH
Confidence 55666666777777766655554444433 2467777777765111 11245555666778888888776 4555222
Q ss_pred HHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhc
Q 008824 442 IQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKN 507 (552)
Q Consensus 442 ~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 507 (552)
..+. ..+.|++|.++.|..-.. ..+.. +...|.|.+|++.++ ++|..++.+.+++.+
T Consensus 332 ~~~~-----kf~~L~~lSlsRCY~i~p--~~~~~-l~s~psl~yLdv~g~-vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 332 QEFF-----KFNYLQHLSLSRCYDIIP--ETLLE-LNSKPSLVYLDVFGC-VSDTTMELLKEMLSH 388 (419)
T ss_pred HHHH-----hcchheeeehhhhcCCCh--HHeee-eccCcceEEEEeccc-cCchHHHHHHHhCcc
Confidence 2222 577778888887743221 22222 345677888887766 345556666666554
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.37 E-value=1.2e-12 Score=152.45 Aligned_cols=288 Identities=17% Similarity=0.163 Sum_probs=152.3
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEecccc-CCCchH
Q 008824 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFV-AGRPEA 211 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~-~~~~~~ 211 (552)
..++.+.+.+.....+. ..+ .+ .+|+.|+++++.+..... .+.. ..+|+.|+|+++. ++..+
T Consensus 589 ~~Lr~L~~~~~~l~~lP--------~~f-~~-~~L~~L~L~~s~l~~L~~-----~~~~-l~~Lk~L~Ls~~~~l~~ip- 651 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMP--------SNF-RP-ENLVKLQMQGSKLEKLWD-----GVHS-LTGLRNIDLRGSKNLKEIP- 651 (1153)
T ss_pred cccEEEEecCCCCCCCC--------CcC-Cc-cCCcEEECcCcccccccc-----cccc-CCCCCEEECCCCCCcCcCC-
Confidence 34667777665433221 112 12 567777777777643211 1111 2677777777653 22221
Q ss_pred HHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcc
Q 008824 212 EALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFH 291 (552)
Q Consensus 212 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 291 (552)
.+.. .++|+.|+|++|..-. .++..+..+++|+.|++++|..-.. +...+ .+++|+.|+|+
T Consensus 652 -~ls~---------l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L~~----Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 652 -DLSM---------ATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENLEI----LPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred -cccc---------CCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCcCc----cCCcC-CCCCCCEEeCC
Confidence 1111 1577777777763221 1334455556777777776542111 11111 34566666666
Q ss_pred cCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHH------------------------HHHHH-HhhcCCCCCEEec
Q 008824 292 NNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGG------------------------TALSE-ALESCTHLKKLDL 346 (552)
Q Consensus 292 ~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~------------------------~~l~~-~l~~~~~L~~L~L 346 (552)
+|.... .++. ..++|+.|++++|.+..-.. ..+.. ....+++|+.|+|
T Consensus 713 gc~~L~----~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 713 GCSRLK----SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CCCCcc----cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 653211 1221 12345555555555432100 00000 1112357777788
Q ss_pred CCCCCChHHHHHHHHHHccCCcccEEecCCCC-CCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCC
Q 008824 347 RDNMFGVEAGVALSKALSNYADLTEVYLSYLN-LEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQH 425 (552)
Q Consensus 347 s~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 425 (552)
++|..... ++..+..+++|+.|++++|. +.. ++... ++++|+.|++++|......+ . ..++
T Consensus 786 s~n~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~--~L~sL~~L~Ls~c~~L~~~p----~---~~~n 847 (1153)
T PLN03210 786 SDIPSLVE----LPSSIQNLHKLEHLEIENCINLET-----LPTGI--NLESLESLDLSGCSRLRTFP----D---ISTN 847 (1153)
T ss_pred CCCCCccc----cChhhhCCCCCCEEECCCCCCcCe-----eCCCC--CccccCEEECCCCCcccccc----c---cccc
Confidence 77754332 56677788888888888763 332 22111 25678888888875322111 1 1257
Q ss_pred cCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCC-CCCHHHHHHHHHHHhcCCCccEEEecCCC
Q 008824 426 LTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSN-FIRRAGARQLAQVVIQKPGFKQLNIDANI 492 (552)
Q Consensus 426 L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~L~~L~L~~N~ 492 (552)
|+.|+|++|.|+. ++..+. .+++|+.|+|++| .+.. ++..+..+++|+.+++++|.
T Consensus 848 L~~L~Ls~n~i~~-----iP~si~-~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIEE-----VPWWIE-KFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCcc-----ChHHHh-cCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence 8888888887763 344555 7888888888886 4433 33334556778888887774
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-13 Score=135.43 Aligned_cols=239 Identities=19% Similarity=0.217 Sum_probs=146.1
Q ss_pred EcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCC
Q 008824 233 NLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPL 312 (552)
Q Consensus 233 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 312 (552)
.+++-++...|+..++.-=++...|+...|.++.+...+.. .....|++++.|+||.|-+.. +..+.....++|+
T Consensus 99 si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~ 173 (505)
T KOG3207|consen 99 SISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPS 173 (505)
T ss_pred hhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhccc
Confidence 34444555555555555544456677777777776554433 334456778888888887665 4556677777888
Q ss_pred ccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCC-CCchHHHHHHHHH
Q 008824 313 LEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLN-LEDDGTVAITNAL 391 (552)
Q Consensus 313 L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 391 (552)
|+.|+++.|++.......... ..++|+.|.|+.|.++.. .+...+..+|+|..|+|.+|. +.. .......
T Consensus 174 Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~---~~~~~~i 244 (505)
T KOG3207|consen 174 LENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILI---KATSTKI 244 (505)
T ss_pred chhcccccccccCCccccchh---hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccce---ecchhhh
Confidence 888888888754321111111 345778888888888854 356666778888888888884 221 1111111
Q ss_pred hcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHH--HHHHhhCCCCccEEEccCCCCCHHH
Q 008824 392 KGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQI--SKALEQGHDQLKVVDMSSNFIRRAG 469 (552)
Q Consensus 392 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l--~~~L~~~~~~L~~L~Ls~n~i~~~g 469 (552)
.+.|++|+|++|.+-+... ...+...++|..|+++.|.|.+-..... .+.. +..++|+.|+++.|.|.+.
T Consensus 245 ---~~~L~~LdLs~N~li~~~~---~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt-~~f~kL~~L~i~~N~I~~w- 316 (505)
T KOG3207|consen 245 ---LQTLQELDLSNNNLIDFDQ---GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT-HTFPKLEYLNISENNIRDW- 316 (505)
T ss_pred ---hhHHhhccccCCccccccc---ccccccccchhhhhccccCcchhcCCCccchhhh-cccccceeeecccCccccc-
Confidence 4578888888887654321 1223445888888888887654211110 0001 1577888888888888653
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCCH
Q 008824 470 ARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 470 ~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
. ....+...++|+.|.+..|.++.
T Consensus 317 -~-sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 317 -R-SLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred -c-ccchhhccchhhhhhcccccccc
Confidence 2 23335557778888888887764
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-13 Score=133.58 Aligned_cols=316 Identities=19% Similarity=0.173 Sum_probs=194.6
Q ss_pred cEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHH
Q 008824 136 TLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALE 215 (552)
Q Consensus 136 ~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~ 215 (552)
...|.++++.. ++...| + .....|+|..|+|+..+..++..+ .+|+.||||+|.|+...+.++.
T Consensus 49 ~~VdCr~~GL~--------eVP~~L--P-~~tveirLdqN~I~~iP~~aF~~l-----~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 49 GIVDCRGKGLT--------EVPANL--P-PETVEIRLDQNQISSIPPGAFKTL-----HRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred ceEEccCCCcc--------cCcccC--C-CcceEEEeccCCcccCChhhccch-----hhhceecccccchhhcChHhhh
Confidence 45677776643 222223 2 567888888888887777766665 7889999999988888888777
Q ss_pred HHHHHHHHhcCCCccE-EEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCC
Q 008824 216 VMAIFSAALEGSVLKS-LNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNM 294 (552)
Q Consensus 216 ~l~~~~~~l~~~~L~~-L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 294 (552)
.+. .|.. ++.++|+|++..-.+|..+ ..|+.|.+.-|++.-.-...+. .+++|..|.+..|.
T Consensus 113 GL~---------~l~~Lvlyg~NkI~~l~k~~F~gL----~slqrLllNan~i~Cir~~al~----dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 113 GLA---------SLLSLVLYGNNKITDLPKGAFGGL----SSLQRLLLNANHINCIRQDALR----DLPSLSLLSLYDNK 175 (498)
T ss_pred hhH---------hhhHHHhhcCCchhhhhhhHhhhH----HHHHHHhcChhhhcchhHHHHH----Hhhhcchhcccchh
Confidence 764 3333 4455588888766666655 7788888887877654444443 34788888888887
Q ss_pred CChHHHHHHHH-HhhcCCCccEEEeeCCC-CChHHHHHHHHHhhcC-------CCCCEEecCCCCCChHHHHHHHHHHcc
Q 008824 295 TGDEGAQAISD-VVKHSPLLEDFRCSSTR-IGSEGGTALSEALESC-------THLKKLDLRDNMFGVEAGVALSKALSN 365 (552)
Q Consensus 295 l~~~g~~~l~~-~l~~~~~L~~L~ls~n~-l~~~~~~~l~~~l~~~-------~~L~~L~Ls~n~l~~~~~~~L~~~l~~ 365 (552)
+.. ++. .+..+..++++++..|. +.+-...+++...... ....-..+.+..+.......+...
T Consensus 176 ~q~-----i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--- 247 (498)
T KOG4237|consen 176 IQS-----ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--- 247 (498)
T ss_pred hhh-----hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh---
Confidence 765 554 45566778888877776 3332223333322221 111122222222222221111111
Q ss_pred CCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHH
Q 008824 366 YADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQIS 445 (552)
Q Consensus 366 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~ 445 (552)
...+..-..+.+......+. ..++ .+++|++|+|++|.++......+..+ ..++.|.|..|.|.... .
T Consensus 248 ~esl~s~~~~~d~~d~~cP~---~cf~-~L~~L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v~----~ 315 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPA---KCFK-KLPNLRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFVS----S 315 (498)
T ss_pred HHhHHHhhccccCcCCcChH---HHHh-hcccceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHHHHH----H
Confidence 11121111222223332222 1232 37899999999999988666555555 78999999999875321 2
Q ss_pred HHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH-HHHHHHHHHHhcCc
Q 008824 446 KALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE-EGIDEVKEIFKNSP 509 (552)
Q Consensus 446 ~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~-~g~~~l~~~l~~~~ 509 (552)
.++. +...|+.|+|.+|+|+... +-++.....|..|+|-.|++-- --+.-+.+-++++.
T Consensus 316 ~~f~-~ls~L~tL~L~~N~it~~~----~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 316 GMFQ-GLSGLKTLSLYDNQITTVA----PGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred Hhhh-ccccceeeeecCCeeEEEe----cccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 2333 7889999999999998753 2334457789999999998763 44666777777664
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1e-11 Score=115.93 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=66.9
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCch-HHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHH
Q 008824 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPE-AEALEVMAIFSAALEGSVLKSLNLSDNALGEKG 243 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~-~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~ 243 (552)
+.++.+|+.+.+|..+....+.. ..+..+-+.......+. .+.....+ +.|++||||+..|+..
T Consensus 136 ~lW~~lDl~~r~i~p~~l~~l~~------rgV~v~Rlar~~~~~prlae~~~~fr--------sRlq~lDLS~s~it~s- 200 (419)
T KOG2120|consen 136 SLWQTLDLTGRNIHPDVLGRLLS------RGVIVFRLARSFMDQPRLAEHFSPFR--------SRLQHLDLSNSVITVS- 200 (419)
T ss_pred cceeeeccCCCccChhHHHHHHh------CCeEEEEcchhhhcCchhhhhhhhhh--------hhhHHhhcchhheeHH-
Confidence 45677777777776544332211 35555555544443321 11111111 3566777776666543
Q ss_pred HHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccC-CCChHHHHHHHHHhhcCCCccEEEeeCCC
Q 008824 244 VRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNN-MTGDEGAQAISDVVKHSPLLEDFRCSSTR 322 (552)
Q Consensus 244 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~ls~n~ 322 (552)
.+..+|+.|..|+.|.|.++++.+..+..+ ..+..|+.|+|+.+ .++..++..+ +..|+.|..|+++.|.
T Consensus 201 --tl~~iLs~C~kLk~lSlEg~~LdD~I~~~i----AkN~~L~~lnlsm~sG~t~n~~~ll---~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 201 --TLHGILSQCSKLKNLSLEGLRLDDPIVNTI----AKNSNLVRLNLSMCSGFTENALQLL---LSSCSRLDELNLSWCF 271 (419)
T ss_pred --HHHHHHHHHHhhhhccccccccCcHHHHHH----hccccceeeccccccccchhHHHHH---HHhhhhHhhcCchHhh
Confidence 344455556666666666666655433333 23345555555543 3443332222 2334444444444444
Q ss_pred CCh
Q 008824 323 IGS 325 (552)
Q Consensus 323 l~~ 325 (552)
+..
T Consensus 272 l~~ 274 (419)
T KOG2120|consen 272 LFT 274 (419)
T ss_pred ccc
Confidence 433
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=1.3e-13 Score=133.06 Aligned_cols=266 Identities=21% Similarity=0.241 Sum_probs=173.4
Q ss_pred HHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeC-C
Q 008824 187 PILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMN-D 265 (552)
Q Consensus 187 ~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n 265 (552)
++....++.-+++.|..|.|+..++.++..+ ++|+.||||+|.|+..+..+|..+ ..|.+|.+.+ |
T Consensus 60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l---------~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISSIPPGAFKTL---------HRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNN 126 (498)
T ss_pred cCcccCCCcceEEEeccCCcccCChhhccch---------hhhceecccccchhhcChHhhhhh----HhhhHHHhhcCC
Confidence 3445557889999999999999988888777 699999999999998887777665 6776666665 8
Q ss_pred CCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHH-HhhcCCCCCEE
Q 008824 266 GISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSE-ALESCTHLKKL 344 (552)
Q Consensus 266 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~-~l~~~~~L~~L 344 (552)
+|++..-..+..+ ..|+.|.+.-|++.- .....+..++++..|.+..|.+.. ++. .+..+..++.+
T Consensus 127 kI~~l~k~~F~gL----~slqrLllNan~i~C----ir~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 127 KITDLPKGAFGGL----SSLQRLLLNANHINC----IRQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTL 193 (498)
T ss_pred chhhhhhhHhhhH----HHHHHHhcChhhhcc----hhHHHHHHhhhcchhcccchhhhh-----hccccccchhccchH
Confidence 8987765555443 578888888777764 234556777888888888887654 343 44456677888
Q ss_pred ecCCCCCChH-HHHHH-------HHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEE--Ecc-CCCCCcchH
Q 008824 345 DLRDNMFGVE-AGVAL-------SKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVL--ELA-GNDITVEAA 413 (552)
Q Consensus 345 ~Ls~n~l~~~-~~~~L-------~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L--~Ls-~n~l~~~~~ 413 (552)
.+..|.+-.. ..+-+ +..++.........+.+.++.......+.. .++.+ .++ .+......+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c-------~~esl~s~~~~~d~~d~~cP 266 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC-------SLESLPSRLSSEDFPDSICP 266 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh-------hHHhHHHhhccccCcCCcCh
Confidence 7777763211 00111 111222222333334444444433333322 23322 222 233333333
Q ss_pred HHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCC
Q 008824 414 PVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANII 493 (552)
Q Consensus 414 ~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i 493 (552)
. .+++..++|++|+|++|.|+...-. +++ ....+++|.|..|+|.... ..++.++..|+.|+|.+|+|
T Consensus 267 ~---~cf~~L~~L~~lnlsnN~i~~i~~~----aFe-~~a~l~eL~L~~N~l~~v~----~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 267 A---KCFKKLPNLRKLNLSNNKITRIEDG----AFE-GAAELQELYLTRNKLEFVS----SGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred H---HHHhhcccceEeccCCCccchhhhh----hhc-chhhhhhhhcCcchHHHHH----HHhhhccccceeeeecCCee
Confidence 2 3477779999999999999863322 333 6789999999999885532 23456789999999999999
Q ss_pred CHHH
Q 008824 494 SEEG 497 (552)
Q Consensus 494 ~~~g 497 (552)
+.-.
T Consensus 335 t~~~ 338 (498)
T KOG4237|consen 335 TTVA 338 (498)
T ss_pred EEEe
Confidence 8543
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.31 E-value=5.1e-12 Score=147.16 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=24.5
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008824 453 DQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 453 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
.+|+.|+|++|.|+. ++..+..+++|+.|+|++|
T Consensus 846 ~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 846 TNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred cccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCCC
Confidence 466777777776653 5666777888888888875
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.5e-13 Score=130.02 Aligned_cols=242 Identities=20% Similarity=0.159 Sum_probs=158.2
Q ss_pred cEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHH
Q 008824 136 TLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALE 215 (552)
Q Consensus 136 ~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~ 215 (552)
.++.++++...+++.+.+..--..+ .+|+.+.|.++.+...+.+ ..... .++++.||||.|-+.. ...
T Consensus 96 ~~~si~nK~vE~iGfDki~akQsn~----kkL~~IsLdn~~V~~~~~~---~~~k~-~~~v~~LdLS~NL~~n----w~~ 163 (505)
T KOG3207|consen 96 SVLSISNKQVEFIGFDKIAAKQSNL----KKLREISLDNYRVEDAGIE---EYSKI-LPNVRDLDLSRNLFHN----WFP 163 (505)
T ss_pred hHhhhcCceeEEecHHHHHHHhhhH----HhhhheeecCccccccchh---hhhhh-CCcceeecchhhhHHh----HHH
Confidence 4567777777777777665554444 6788999999988765543 22222 4899999999986632 222
Q ss_pred HHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCC-
Q 008824 216 VMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNM- 294 (552)
Q Consensus 216 ~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 294 (552)
..++..+ -++|+.|+|+.|++....-..... ..++|+.|.|+.|+++. +.+...+..+|+|..|+|..|.
T Consensus 164 v~~i~eq---Lp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~ 234 (505)
T KOG3207|consen 164 VLKIAEQ---LPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEI 234 (505)
T ss_pred HHHHHHh---cccchhcccccccccCCccccchh---hhhhhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccc
Confidence 2222222 289999999999765321111111 23789999999999984 4555556667999999999884
Q ss_pred CChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHH--HHHHccCCcccEE
Q 008824 295 TGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVAL--SKALSNYADLTEV 372 (552)
Q Consensus 295 l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L--~~~l~~~~~L~~L 372 (552)
+. ....+ -+-+..|++|+|++|.+-+.. ....+++++.|+.|+++.|.+.+-..... ..-....++|+.|
T Consensus 235 ~~---~~~~~--~~i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 235 IL---IKATS--TKILQTLQELDLSNNNLIDFD---QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL 306 (505)
T ss_pred cc---eecch--hhhhhHHhhccccCCcccccc---cccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence 22 11122 233567999999999976542 22456788899999999998776321111 1113557889999
Q ss_pred ecCCCCCCchH-HHHHHHHHhcCCCCccEEEccCCCCCcc
Q 008824 373 YLSYLNLEDDG-TVAITNALKGSAPLLEVLELAGNDITVE 411 (552)
Q Consensus 373 ~L~~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 411 (552)
++..|++.+.. +..+ . .+++|+.|.+..|.++.+
T Consensus 307 ~i~~N~I~~w~sl~~l----~-~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 307 NISENNIRDWRSLNHL----R-TLENLKHLRITLNYLNKE 341 (505)
T ss_pred ecccCccccccccchh----h-ccchhhhhhccccccccc
Confidence 99999886522 1112 1 156788888888877654
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.13 E-value=3.1e-13 Score=116.20 Aligned_cols=153 Identities=20% Similarity=0.322 Sum_probs=71.4
Q ss_pred CccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHH
Q 008824 284 KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKAL 363 (552)
Q Consensus 284 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l 363 (552)
+++.|.||+|+++. ++..+..+.+|+.|++++|+|.. ++..++.++.|+.|+++-|.+.. ++..+
T Consensus 34 ~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~-----lprgf 98 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNI-----LPRGF 98 (264)
T ss_pred hhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhc-----Ccccc
Confidence 34444444444443 33344444444555554444433 44444445555555555444433 34455
Q ss_pred ccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHH
Q 008824 364 SNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQ 443 (552)
Q Consensus 364 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~ 443 (552)
+.+|.|+.|+|.+|++...... ..+.. +..|+-|.|+.|.+.- .+..++++ ++|+.|.++.|.+- .
T Consensus 99 gs~p~levldltynnl~e~~lp---gnff~-m~tlralyl~dndfe~-lp~dvg~l----t~lqil~lrdndll-----~ 164 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLP---GNFFY-MTTLRALYLGDNDFEI-LPPDVGKL----TNLQILSLRDNDLL-----S 164 (264)
T ss_pred CCCchhhhhhccccccccccCC---cchhH-HHHHHHHHhcCCCccc-CChhhhhh----cceeEEeeccCchh-----h
Confidence 5555555555555554432211 00101 2445555555555432 22233333 56666666665432 2
Q ss_pred HHHHHhhCCCCccEEEccCCCCC
Q 008824 444 ISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 444 l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
+++.+. .+.+|++|++.+|+++
T Consensus 165 lpkeig-~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 165 LPKEIG-DLTRLRELHIQGNRLT 186 (264)
T ss_pred CcHHHH-HHHHHHHHhcccceee
Confidence 344444 4556666666666554
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.11 E-value=2.4e-13 Score=116.83 Aligned_cols=130 Identities=23% Similarity=0.303 Sum_probs=55.2
Q ss_pred CccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHH
Q 008824 284 KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKAL 363 (552)
Q Consensus 284 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l 363 (552)
+|+.|++++|++.+ ++..+..++.|+.|+++-|++.. ++..++.++.|+.|||.+|++.... ++..+
T Consensus 57 nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~-----lprgfgs~p~levldltynnl~e~~---lpgnf 123 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNI-----LPRGFGSFPALEVLDLTYNNLNENS---LPGNF 123 (264)
T ss_pred hhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhc-----CccccCCCchhhhhhcccccccccc---CCcch
Confidence 44444444444443 44444444444444444444332 3444444444444444444444322 23333
Q ss_pred ccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCC
Q 008824 364 SNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELK 437 (552)
Q Consensus 364 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 437 (552)
..+..|+.|+|++|.+.-.. ..+. .+++|+.|.+..|.+-. .+..++.+ +.|++|.+.+|.++
T Consensus 124 f~m~tlralyl~dndfe~lp-~dvg-----~lt~lqil~lrdndll~-lpkeig~l----t~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 124 FYMTTLRALYLGDNDFEILP-PDVG-----KLTNLQILSLRDNDLLS-LPKEIGDL----TRLRELHIQGNRLT 186 (264)
T ss_pred hHHHHHHHHHhcCCCcccCC-hhhh-----hhcceeEEeeccCchhh-CcHHHHHH----HHHHHHhcccceee
Confidence 33444444555554433100 0011 13445555555554322 23333333 45555555555543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=3.4e-11 Score=112.56 Aligned_cols=129 Identities=22% Similarity=0.294 Sum_probs=95.7
Q ss_pred CCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHH
Q 008824 339 THLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISA 418 (552)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 418 (552)
+.|++|||++|.++. +-..+.-.|.++.|++++|.|...+- ++. +++|+.||||+|.++......
T Consensus 284 q~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~n--La~-----L~~L~~LDLS~N~Ls~~~Gwh--- 348 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQN--LAE-----LPQLQLLDLSGNLLAECVGWH--- 348 (490)
T ss_pred hhhhhccccccchhh-----hhhhhhhccceeEEeccccceeeehh--hhh-----cccceEeecccchhHhhhhhH---
Confidence 467888999988765 45666677889999999998876332 322 688999999999876533222
Q ss_pred HhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008824 419 CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 419 ~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
....++++|.|++|.|.+ ..+|. .+.+|..||+++|+|... .-++.++++|.|..|.|.+|++.
T Consensus 349 --~KLGNIKtL~La~N~iE~------LSGL~-KLYSLvnLDl~~N~Ie~l---deV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 --LKLGNIKTLKLAQNKIET------LSGLR-KLYSLVNLDLSSNQIEEL---DEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred --hhhcCEeeeehhhhhHhh------hhhhH-hhhhheeccccccchhhH---HHhcccccccHHHHHhhcCCCcc
Confidence 123688999999998765 44555 677888999999988652 33566778899999999999875
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=7e-10 Score=103.85 Aligned_cols=212 Identities=18% Similarity=0.179 Sum_probs=131.1
Q ss_pred ccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhh
Q 008824 257 LEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALE 336 (552)
Q Consensus 257 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~ 336 (552)
+.-|.+.++.|...+-... +-..+..+++|+|.+|.|++ +..++..++++|.|+.|+++.|.+... +..+| .
T Consensus 47 ~ellvln~~~id~~gd~~~--~~~~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~-I~~lp---~ 118 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVML--FGSSVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD-IKSLP---L 118 (418)
T ss_pred hhhheecCCCCCcchhHHH--HHHHhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc-cccCc---c
Confidence 4455566666544332111 11234677777777777776 566777777788888888888776542 11111 1
Q ss_pred cCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCC-----chHHHHHHHHHhcCCCCccEEEccCCCCCcc
Q 008824 337 SCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLE-----DDGTVAITNALKGSAPLLEVLELAGNDITVE 411 (552)
Q Consensus 337 ~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 411 (552)
...+|+.|.|.+..+.-. .+...+..+|.++.|+++.|++. +.....+ .+.+++|++..|...
T Consensus 119 p~~nl~~lVLNgT~L~w~---~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~-------s~~v~tlh~~~c~~~-- 186 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWT---QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW-------STEVLTLHQLPCLEQ-- 186 (418)
T ss_pred cccceEEEEEcCCCCChh---hhhhhhhcchhhhhhhhccchhhhhcccccccccc-------chhhhhhhcCCcHHH--
Confidence 234777787777766543 24455666777778877777432 2111111 246677777766532
Q ss_pred hHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008824 412 AAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 412 ~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
......++.+..|++..+.+..|.+.+.... ++.+ ..+.+-.|.|+.|.|++ .+-.+++.+++.|+.|.+++|
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e---k~se-~~p~~~~LnL~~~~ids---wasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSE---KGSE-PFPSLSCLNLGANNIDS---WASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhc---ccCC-CCCcchhhhhccccccc---HHHHHHHcCCchhheeeccCC
Confidence 2334445455568888888888877764432 2333 67777788888888877 344566778888888888888
Q ss_pred CCCH
Q 008824 492 IISE 495 (552)
Q Consensus 492 ~i~~ 495 (552)
++.+
T Consensus 260 Pl~d 263 (418)
T KOG2982|consen 260 PLSD 263 (418)
T ss_pred cccc
Confidence 8865
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=4.5e-10 Score=100.77 Aligned_cols=127 Identities=23% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCEEecCCCCCChHHHHHHHHHHc-cCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHH
Q 008824 340 HLKKLDLRDNMFGVEAGVALSKALS-NYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISA 418 (552)
Q Consensus 340 ~L~~L~Ls~n~l~~~~~~~L~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 418 (552)
.+++|+|++|.|+. .+.+. .+.+|+.|++++|.|.... ++. .++.|++|++++|.|+.... .+.
T Consensus 20 ~~~~L~L~~n~I~~------Ie~L~~~l~~L~~L~Ls~N~I~~l~------~l~-~L~~L~~L~L~~N~I~~i~~-~l~- 84 (175)
T PF14580_consen 20 KLRELNLRGNQIST------IENLGATLDKLEVLDLSNNQITKLE------GLP-GLPRLKTLDLSNNRISSISE-GLD- 84 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T------T-----TT--EEE--SS---S-CH-HHH-
T ss_pred cccccccccccccc------ccchhhhhcCCCEEECCCCCCcccc------Ccc-ChhhhhhcccCCCCCCcccc-chH-
Confidence 45666666665554 22333 3455666666666655411 111 14566666666666655322 121
Q ss_pred HhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 008824 419 CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNI 488 (552)
Q Consensus 419 ~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L 488 (552)
..+++|++|+|++|.|.+-+- ...|. .+++|+.|+|.+|.++... .+=..++..+|+|+.||-
T Consensus 85 --~~lp~L~~L~L~~N~I~~l~~---l~~L~-~l~~L~~L~L~~NPv~~~~-~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 85 --KNLPNLQELYLSNNKISDLNE---LEPLS-SLPKLRVLSLEGNPVCEKK-NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --HH-TT--EEE-TTS---SCCC---CGGGG-G-TT--EEE-TT-GGGGST-THHHHHHHH-TT-SEETT
T ss_pred --HhCCcCCEEECcCCcCCChHH---hHHHH-cCCCcceeeccCCcccchh-hHHHHHHHHcChhheeCC
Confidence 123666666666666554221 12233 5666777777777665432 222334555777777654
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=4.6e-10 Score=100.69 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=11.8
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEc
Q 008824 395 APLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNL 431 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 431 (552)
+++|++|+|.+|.++.. ..+-...+..+|+|+.||-
T Consensus 112 l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 34455555555544432 1222222333455555543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.1e-09 Score=102.51 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=107.1
Q ss_pred hcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHH
Q 008824 308 KHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAI 387 (552)
Q Consensus 308 ~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l 387 (552)
..+..|+++|||+|.|+. +-+...-.|.++.|++++|.+.. ...++.+++|+.|+|++|.++.
T Consensus 281 dTWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~------ 343 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRT------VQNLAELPQLQLLDLSGNLLAE------ 343 (490)
T ss_pred chHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceee------ehhhhhcccceEeecccchhHh------
Confidence 345678889999998765 44555566788999999998876 3347788999999999998775
Q ss_pred HHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCH
Q 008824 388 TNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRR 467 (552)
Q Consensus 388 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~ 467 (552)
+.++...+-++++|.|++|.+.+.. . +...-+|..||+++|+|..... ...+. .++.|+.|.|.+|.+..
T Consensus 344 ~~Gwh~KLGNIKtL~La~N~iE~LS--G----L~KLYSLvnLDl~~N~Ie~lde---V~~IG-~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 344 CVGWHLKLGNIKTLKLAQNKIETLS--G----LRKLYSLVNLDLSSNQIEELDE---VNHIG-NLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhhcCEeeeehhhhhHhhhh--h----hHhhhhheeccccccchhhHHH---hcccc-cccHHHHHhhcCCCccc
Confidence 3333334678899999998875422 2 3333789999999998865322 33444 78899999999997753
Q ss_pred HHHHHHHHHHhcC-CCccEEEecCCCCCHH
Q 008824 468 AGARQLAQVVIQK-PGFKQLNIDANIISEE 496 (552)
Q Consensus 468 ~g~~~l~~~l~~~-~~L~~L~L~~N~i~~~ 496 (552)
.- ..-..++..+ ..-.++.|++-+-+..
T Consensus 414 ~v-dYRTKVLa~FGERaSE~~LD~~~~~~~ 442 (490)
T KOG1259|consen 414 SV-DYRTKVLARFGERASEISLDNEPGNQQ 442 (490)
T ss_pred cc-hHHHHHHHHHhhhhhheecCCCCcchh
Confidence 21 1111222212 2234666766654443
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.73 E-value=7.3e-09 Score=107.75 Aligned_cols=251 Identities=20% Similarity=0.157 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHhcCCCccEEEcCCCCCCH-HHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 008824 212 EALEVMAIFSAALEGSVLKSLNLSDNALGE-KGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQF 290 (552)
Q Consensus 212 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 290 (552)
..+..++.+..+++ +++.|.+-...-.+ .+.-.|.. +..|+.|.|.+|.|+.. ..+...- .+|++|-
T Consensus 71 ~vl~qLq~i~d~lq--kt~~lkl~~~pa~~pt~pi~ifp----F~sLr~LElrg~~L~~~--~GL~~lr---~qLe~LI- 138 (1096)
T KOG1859|consen 71 RVLEQLQRILDFLQ--KTKVLKLLPSPARDPTEPISIFP----FRSLRVLELRGCDLSTA--KGLQELR---HQLEKLI- 138 (1096)
T ss_pred hHHHHHHHHHHHHh--hheeeeecccCCCCCCCCceecc----ccceeeEEecCcchhhh--hhhHHHH---Hhhhhhh-
Confidence 44555666666654 34444443321111 11112333 48899999999988652 2222221 2344442
Q ss_pred ccCCCChHHHHHHHH-Hhhc------CCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHH
Q 008824 291 HNNMTGDEGAQAISD-VVKH------SPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKAL 363 (552)
Q Consensus 291 s~n~l~~~g~~~l~~-~l~~------~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l 363 (552)
..|.+.. ..++.. ..+. +..|.+.+++.|.+.. +-.++.-++.|+.|+|++|+++. ...+
T Consensus 139 C~~Sl~A--l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~------v~~L 205 (1096)
T KOG1859|consen 139 CHNSLDA--LRHVFASCGGDISNSPVWNKLATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTK------VDNL 205 (1096)
T ss_pred hhccHHH--HHHHHHHhccccccchhhhhHhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhh------hHHH
Confidence 2232221 222221 1111 1246677777777654 45566667789999999999987 4578
Q ss_pred ccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHH
Q 008824 364 SNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQ 443 (552)
Q Consensus 364 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~ 443 (552)
..++.|++|||++|.+.... .+.. . -+.|..|.+++|.++.. ..+.+ ..+|+.|||++|-|.+..-..
T Consensus 206 r~l~~LkhLDlsyN~L~~vp--~l~~---~-gc~L~~L~lrnN~l~tL--~gie~----LksL~~LDlsyNll~~hseL~ 273 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSYNCLRHVP--QLSM---V-GCKLQLLNLRNNALTTL--RGIEN----LKSLYGLDLSYNLLSEHSELE 273 (1096)
T ss_pred Hhcccccccccccchhcccc--ccch---h-hhhheeeeecccHHHhh--hhHHh----hhhhhccchhHhhhhcchhhh
Confidence 88999999999999877521 1111 1 25699999999987652 23333 389999999999776532211
Q ss_pred HHHHHhhCCCCccEEEccCCCCC--HHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHH
Q 008824 444 ISKALEQGHDQLKVVDMSSNFIR--RAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKE 503 (552)
Q Consensus 444 l~~~L~~~~~~L~~L~Ls~n~i~--~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~ 503 (552)
. |. .+..|+.|+|.||.+- ...-.+.++.+..+.-=..+-|++-.|+...+..-..
T Consensus 274 p---Lw-sLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~efwk~~s 331 (1096)
T KOG1859|consen 274 P---LW-SLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGREFWKRQS 331 (1096)
T ss_pred H---HH-HHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccchhhhhhhh
Confidence 1 22 3557889999999763 2223345555554544556777777776554443333
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=3.5e-09 Score=110.25 Aligned_cols=243 Identities=28% Similarity=0.300 Sum_probs=131.6
Q ss_pred ccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHH
Q 008824 193 NSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAA 272 (552)
Q Consensus 193 ~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 272 (552)
...++.++..++..+..... ...+ ..++.+++..|.+.. +...+..+++|+.|++.+|.|...
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~l---------~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-- 110 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDL-VESL---------TSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-- 110 (414)
T ss_pred cchhhhhcchhccccchhhh-HHHh---------HhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc--
Confidence 46777777777766544322 1111 356666677776654 223344557778888887777432
Q ss_pred HHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCC
Q 008824 273 RAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFG 352 (552)
Q Consensus 273 ~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 352 (552)
...+..+++|++|+|++|.|+. +. .+..++.|+.|++++|.|... ..+..++.|+.+++++|.+.
T Consensus 111 ---~~~l~~~~~L~~L~ls~N~I~~-----i~-~l~~l~~L~~L~l~~N~i~~~------~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 111 ---ENLLSSLVNLQVLDLSFNKITK-----LE-GLSTLTLLKELNLSGNLISDI------SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ---ccchhhhhcchheecccccccc-----cc-chhhccchhhheeccCcchhc------cCCccchhhhcccCCcchhh
Confidence 2224456777777777777765 22 234455577777777776642 23344667777777777766
Q ss_pred hHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEcc
Q 008824 353 VEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLA 432 (552)
Q Consensus 353 ~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 432 (552)
..... . +..+..++.+++..|.+........ +..+..+++..|.++.......... .+|+.++++
T Consensus 176 ~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~~~~-------~~~l~~~~l~~n~i~~~~~l~~~~~----~~L~~l~l~ 240 (414)
T KOG0531|consen 176 DIEND---E-LSELISLEELDLGGNSIREIEGLDL-------LKKLVLLSLLDNKISKLEGLNELVM----LHLRELYLS 240 (414)
T ss_pred hhhhh---h-hhhccchHHHhccCCchhcccchHH-------HHHHHHhhcccccceeccCcccchh----HHHHHHhcc
Confidence 52110 0 4556666777777766554221111 1223333555555544221110000 036677777
Q ss_pred CCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008824 433 ENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 433 ~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
+|.+.... ..+. .+..+..|++..|++... ..+...+.+..+....|.+.
T Consensus 241 ~n~i~~~~-----~~~~-~~~~l~~l~~~~n~~~~~------~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 241 GNRISRSP-----EGLE-NLKNLPVLDLSSNRISNL------EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cCcccccc-----cccc-ccccccccchhhcccccc------ccccccchHHHhccCcchhc
Confidence 77665421 3333 566667777777766542 11233455555556666554
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=2.8e-08 Score=103.12 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=44.3
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHHhcCC-CccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008824 228 VLKSLNLSDNALGEKGVRAFGALLESQS-SLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
.++.|++.+|.+++. ........ +|+.|++++|.+... ...+..++.|+.|++++|++.+ ++..
T Consensus 117 ~l~~L~l~~n~i~~i-----~~~~~~~~~nL~~L~l~~N~i~~l-----~~~~~~l~~L~~L~l~~N~l~~-----l~~~ 181 (394)
T COG4886 117 NLTSLDLDNNNITDI-----PPLIGLLKSNLKELDLSDNKIESL-----PSPLRNLPNLKNLDLSFNDLSD-----LPKL 181 (394)
T ss_pred ceeEEecCCcccccC-----ccccccchhhcccccccccchhhh-----hhhhhccccccccccCCchhhh-----hhhh
Confidence 455555555554441 12222222 455555555554322 1123334455555555555544 3333
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCC
Q 008824 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDN 349 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 349 (552)
....+.|+.|++++|.+.. ++..+.....|++|.+++|
T Consensus 182 ~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCC
Confidence 3344455555555555443 2222223333455555554
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=1.4e-09 Score=113.16 Aligned_cols=223 Identities=24% Similarity=0.245 Sum_probs=115.6
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008824 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
.+|..|++.+|.|... ...+..+.+|+.|++++|.|+... .+..++.|+.|++++|.+.. +. .
T Consensus 95 ~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~~-----~~-~ 157 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLISD-----IS-G 157 (414)
T ss_pred cceeeeeccccchhhc-----ccchhhhhcchheecccccccccc------chhhccchhhheeccCcchh-----cc-C
Confidence 4666666666665542 121344466666666666665432 12333456666777776654 22 1
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008824 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..++.|+.+++++|++...... . +..+.+++.+++.+|.+.. ...+..+..+..+++..|.+.....
T Consensus 158 ~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~------i~~~~~~~~l~~~~l~~n~i~~~~~-- 225 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIRE------IEGLDLLKKLVLLSLLDNKISKLEG-- 225 (414)
T ss_pred CccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhc------ccchHHHHHHHHhhcccccceeccC--
Confidence 33356666777777766542110 1 3556667777777776654 2223333333344555555543111
Q ss_pred HHHHHhcCCC--CccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCC
Q 008824 387 ITNALKGSAP--LLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNF 464 (552)
Q Consensus 387 l~~~l~~~~~--~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~ 464 (552)
+.. .. +|+.+++++|.+.... ..+..++.+..|++..|.+.. ...+. ....+..+....|.
T Consensus 226 ----l~~-~~~~~L~~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~~------~~~~~-~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 226 ----LNE-LVMLHLRELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRISN------LEGLE-RLPKLSELWLNDNK 288 (414)
T ss_pred ----ccc-chhHHHHHHhcccCcccccc-----ccccccccccccchhhccccc------ccccc-ccchHHHhccCcch
Confidence 000 11 2667777777665421 123334667777777776654 22233 45556666666666
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008824 465 IRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 465 i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
+.......-.......+.++.+.+.+|++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hcchhhhhccccccccccccccccccCcccc
Confidence 5533111111114445667777777776654
No 45
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.57 E-value=1.9e-07 Score=99.54 Aligned_cols=136 Identities=26% Similarity=0.289 Sum_probs=71.8
Q ss_pred CCccEEEcCCC-CCCHHHHHHHHHHHhcCCCccEEEeeCC-CCCHHHHHHHHHhcCCCCCccEEEcccCC-CChHHHHHH
Q 008824 227 SVLKSLNLSDN-ALGEKGVRAFGALLESQSSLEELYLMND-GISKEAARAVCELIPSTEKLRVLQFHNNM-TGDEGAQAI 303 (552)
Q Consensus 227 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l 303 (552)
+.|+.|.+..+ .+++.+ +......+++|+.|+++++ ................+++|+.|+++.+. +++.|...+
T Consensus 188 ~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred chhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 56666666666 555544 2233344566777777652 21111111122233445667777776665 666665555
Q ss_pred HHHhhcCCCccEEEeeCCC-CChHHHHHHHHHhhcCCCCCEEecCCCCCC-hHHHHHHHHHHccCCcccEEec
Q 008824 304 SDVVKHSPLLEDFRCSSTR-IGSEGGTALSEALESCTHLKKLDLRDNMFG-VEAGVALSKALSNYADLTEVYL 374 (552)
Q Consensus 304 ~~~l~~~~~L~~L~ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~~~L~~~l~~~~~L~~L~L 374 (552)
+.. |++|+.|.+.+|. +++.|+..+. ..+++|++|++++|... +.+.. .....+++++.|.+
T Consensus 265 ~~~---c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~~~d~~l~---~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASR---CPNLETLSLSNCSNLTDEGLVSIA---ERCPSLRELDLSGCHGLTDSGLE---ALLKNCPNLRELKL 328 (482)
T ss_pred Hhh---CCCcceEccCCCCccchhHHHHHH---HhcCcccEEeeecCccchHHHHH---HHHHhCcchhhhhh
Confidence 543 6667777766666 6666644443 35556777777766533 33322 22333555555443
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=1.8e-09 Score=109.44 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=125.8
Q ss_pred CccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHh
Q 008824 256 SLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEAL 335 (552)
Q Consensus 256 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l 335 (552)
.-...+|+.|++.... ..++.+ ..|..+.|+.|.+.. ++..++.+..|+.|+|+.|++.. ++..+
T Consensus 76 dt~~aDlsrNR~~elp-~~~~~f----~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~-----lp~~l 140 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELP-EEACAF----VSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSH-----LPDGL 140 (722)
T ss_pred chhhhhccccccccCc-hHHHHH----HHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhc-----CChhh
Confidence 3455677777764322 222222 356677777777765 77778888888888888888765 55555
Q ss_pred hcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHH
Q 008824 336 ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPV 415 (552)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 415 (552)
..+ -|+.|-+++|+++. ++..+...+.|..|+.+.|.+.....+ +. .+.+|+.|.+..|++.. .+..
T Consensus 141 C~l-pLkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~slpsq-l~-----~l~slr~l~vrRn~l~~-lp~E 207 (722)
T KOG0532|consen 141 CDL-PLKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQSLPSQ-LG-----YLTSLRDLNVRRNHLED-LPEE 207 (722)
T ss_pred hcC-cceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhhhchHH-hh-----hHHHHHHHHHhhhhhhh-CCHH
Confidence 555 58888888888776 566677777888888888876652221 11 14677778888777655 3344
Q ss_pred HHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008824 416 ISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 416 l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
++. -.|..||+++|+|.. |+-.+. .++.|++|-|.+|.+....+..... +...-+++|+..-+
T Consensus 208 l~~-----LpLi~lDfScNkis~-----iPv~fr-~m~~Lq~l~LenNPLqSPPAqIC~k--GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 208 LCS-----LPLIRLDFSCNKISY-----LPVDFR-KMRHLQVLQLENNPLQSPPAQICEK--GKVHIFKYLSTQAC 270 (722)
T ss_pred HhC-----CceeeeecccCceee-----cchhhh-hhhhheeeeeccCCCCCChHHHHhc--cceeeeeeecchhc
Confidence 442 258888888888763 344444 6778888888888887665443322 11233667777666
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.55 E-value=5.2e-08 Score=101.08 Aligned_cols=177 Identities=24% Similarity=0.310 Sum_probs=111.6
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 008824 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAAR 273 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 273 (552)
..++.|++.+|.+.+....... +. .+|+.|++++|.+... +..+..++.|+.|++++|+++....
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~-~~--------~nL~~L~l~~N~i~~l-----~~~~~~l~~L~~L~l~~N~l~~l~~- 180 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGL-LK--------SNLKELDLSDNKIESL-----PSPLRNLPNLKNLDLSFNDLSDLPK- 180 (394)
T ss_pred cceeEEecCCcccccCcccccc-ch--------hhcccccccccchhhh-----hhhhhccccccccccCCchhhhhhh-
Confidence 5678888888777665432111 00 1678888888877652 2345556778888888888755432
Q ss_pred HHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 008824 274 AVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGV 353 (552)
Q Consensus 274 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 353 (552)
.....+.|+.|++++|++.+ ++..+.....|++|.+++|++.. .+..+..+.++..|.+.+|.+..
T Consensus 181 ----~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 181 ----LLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLED 246 (394)
T ss_pred ----hhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeee
Confidence 22234677888888887776 55554555568888888875221 34556666777777777777654
Q ss_pred HHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcc
Q 008824 354 EAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVE 411 (552)
Q Consensus 354 ~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 411 (552)
+...+..++.++.|++++|.+.+... + .+..+++.|++++|.+...
T Consensus 247 -----~~~~~~~l~~l~~L~~s~n~i~~i~~--~-----~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 247 -----LPESIGNLSNLETLDLSNNQISSISS--L-----GSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred -----ccchhccccccceecccccccccccc--c-----cccCccCEEeccCcccccc
Confidence 24556666777777777777766332 1 2246777777777776553
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=1.8e-09 Score=109.40 Aligned_cols=131 Identities=24% Similarity=0.308 Sum_probs=60.0
Q ss_pred hcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHH
Q 008824 252 ESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTAL 331 (552)
Q Consensus 252 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l 331 (552)
++...|+.|+|+.|+++... ..++. --|+.|-+++|+++. ++..++....|..|+.+.|.+.. +
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp-~~lC~-----lpLkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~s-----l 181 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLP-DGLCD-----LPLKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQS-----L 181 (722)
T ss_pred hhhhHHHHhhhccchhhcCC-hhhhc-----CcceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhhh-----c
Confidence 33355555666655553221 11211 145555555555554 44444444555555555555433 4
Q ss_pred HHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCc
Q 008824 332 SEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITV 410 (552)
Q Consensus 332 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 410 (552)
+..++.+.+|+.|.+..|.+.. ++.-+. .-.|..||++.|++.. ++-.+.. +.+|++|-|.+|.+..
T Consensus 182 psql~~l~slr~l~vrRn~l~~-----lp~El~-~LpLi~lDfScNkis~-----iPv~fr~-m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLED-----LPEELC-SLPLIRLDFSCNKISY-----LPVDFRK-MRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhhh-----CCHHHh-CCceeeeecccCceee-----cchhhhh-hhhheeeeeccCCCCC
Confidence 4444445555555555554433 333333 2234445555555543 1111211 4455555555555544
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=1.7e-08 Score=105.10 Aligned_cols=224 Identities=17% Similarity=0.200 Sum_probs=142.9
Q ss_pred HHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCCh-HHHHHHHHHhhcCCCccEEEeeCC
Q 008824 243 GVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGD-EGAQAISDVVKHSPLLEDFRCSST 321 (552)
Q Consensus 243 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~g~~~l~~~l~~~~~L~~L~ls~n 321 (552)
.++.+.+++.+.+.|+.+..-.-+-++ +..++ ....|++|.|.++.++. .|+..+..- |+.|.. +|
T Consensus 75 qLq~i~d~lqkt~~lkl~~~pa~~pt~--pi~if----pF~sLr~LElrg~~L~~~~GL~~lr~q------Le~LIC-~~ 141 (1096)
T KOG1859|consen 75 QLQRILDFLQKTKVLKLLPSPARDPTE--PISIF----PFRSLRVLELRGCDLSTAKGLQELRHQ------LEKLIC-HN 141 (1096)
T ss_pred HHHHHHHHHhhheeeeecccCCCCCCC--Cceec----cccceeeEEecCcchhhhhhhHHHHHh------hhhhhh-hc
Confidence 456677777665556666555444432 22232 34799999999998875 344444433 333322 22
Q ss_pred CCChHHHHH-HHHHhhcCC------CCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcC
Q 008824 322 RIGSEGGTA-LSEALESCT------HLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGS 394 (552)
Q Consensus 322 ~l~~~~~~~-l~~~l~~~~------~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 394 (552)
.+.. ... ++...+... .|...+.+.|.+.. +-..+.-++.|+.|+|++|++.+ +..+..
T Consensus 142 Sl~A--l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~------v~~Lr~- 207 (1096)
T KOG1859|consen 142 SLDA--LRHVFASCGGDISNSPVWNKLATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTK------VDNLRR- 207 (1096)
T ss_pred cHHH--HHHHHHHhccccccchhhhhHhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhh------hHHHHh-
Confidence 2211 111 222222111 35556677776654 56778888999999999999987 234444
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHH
Q 008824 395 APLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLA 474 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~ 474 (552)
++.|++|||++|.+....-..... ..|..|+|++|.++. ..+++ ++.+|+.||+++|.|.+..-.
T Consensus 208 l~~LkhLDlsyN~L~~vp~l~~~g-----c~L~~L~lrnN~l~t------L~gie-~LksL~~LDlsyNll~~hseL--- 272 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLRHVPQLSMVG-----CKLQLLNLRNNALTT------LRGIE-NLKSLYGLDLSYNLLSEHSEL--- 272 (1096)
T ss_pred cccccccccccchhccccccchhh-----hhheeeeecccHHHh------hhhHH-hhhhhhccchhHhhhhcchhh---
Confidence 799999999999987533222222 249999999999875 55666 889999999999988764322
Q ss_pred HHHhcCCCccEEEecCCCCC--HHHHHHHHHHHhcC
Q 008824 475 QVVIQKPGFKQLNIDANIIS--EEGIDEVKEIFKNS 508 (552)
Q Consensus 475 ~~l~~~~~L~~L~L~~N~i~--~~g~~~l~~~l~~~ 508 (552)
..|..+..|+.|+|.||++- ..--.+.++.+.++
T Consensus 273 ~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~ 308 (1096)
T KOG1859|consen 273 EPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKN 308 (1096)
T ss_pred hHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccc
Confidence 22444667999999999964 34445555555544
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.51 E-value=6.6e-07 Score=97.54 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=89.8
Q ss_pred CCccEEEcCCC-CCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH
Q 008824 227 SVLKSLNLSDN-ALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD 305 (552)
Q Consensus 227 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 305 (552)
.+|++||+++. .+...-...++.. +++|++|.+++-.+.... +.....+.++|..||+|++.+++ + .
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~---LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~n-----l-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM---LPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISN-----L-S 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh---CcccceEEecCceecchh---HHHHhhccCccceeecCCCCccC-----c-H
Confidence 57778888776 3444444555555 477777777776664433 44444555777788888777776 3 4
Q ss_pred HhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHH--HHHHHHHHccCCcccEEecCCCCCCchH
Q 008824 306 VVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEA--GVALSKALSNYADLTEVYLSYLNLEDDG 383 (552)
Q Consensus 306 ~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--~~~L~~~l~~~~~L~~L~L~~n~l~~~~ 383 (552)
++.++++|+.|.+.+-.+.... -...+.++++|+.||+|........ .....+.-..+|+|+.||.+++.+....
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQ---DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhccccHHHHhccCCCCCchh---hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 5667777777777766655421 1234556777888888776544332 1111222234677777887777777655
Q ss_pred HHHHH
Q 008824 384 TVAIT 388 (552)
Q Consensus 384 ~~~l~ 388 (552)
+..+.
T Consensus 267 le~ll 271 (699)
T KOG3665|consen 267 LEELL 271 (699)
T ss_pred HHHHH
Confidence 54443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.50 E-value=5.1e-07 Score=98.40 Aligned_cols=116 Identities=16% Similarity=0.278 Sum_probs=50.4
Q ss_pred CCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCc-hHHHHHH
Q 008824 310 SPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLED-DGTVAIT 388 (552)
Q Consensus 310 ~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~ 388 (552)
+|+|++|.+++-.+.... +.....++++|..||+|+++++. ..+++++++|+.|.+.+-.+.. ..+..+.
T Consensus 147 LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~n------l~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISN------LSGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred CcccceEEecCceecchh---HHHHhhccCccceeecCCCCccC------cHHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 455555555544443332 22223344555555555555544 2444555555555555444433 1122222
Q ss_pred HHHhcCCCCccEEEccCCCCCcch--HHHHHHHhhcCCCcCEEEccCCCCCch
Q 008824 389 NALKGSAPLLEVLELAGNDITVEA--APVISACVAAKQHLTKLNLAENELKDD 439 (552)
Q Consensus 389 ~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~l~d~ 439 (552)
. +++|++||+|........ ......+-..+|.|+.||.|++.+...
T Consensus 218 ~-----L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 218 N-----LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred c-----ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 1 455555555544322211 222222222335555555555555443
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.37 E-value=1.9e-06 Score=91.69 Aligned_cols=229 Identities=22% Similarity=0.252 Sum_probs=146.7
Q ss_pred CccEEEeeC--CCCCHHHHHHHHHhcCCCCCccEEEcccC-CCChHHHHHHHHHhhcCCCccEEEeeCC-C-CChHHHHH
Q 008824 256 SLEELYLMN--DGISKEAARAVCELIPSTEKLRVLQFHNN-MTGDEGAQAISDVVKHSPLLEDFRCSST-R-IGSEGGTA 330 (552)
Q Consensus 256 ~L~~L~L~~--n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~ls~n-~-l~~~~~~~ 330 (552)
.++.+.+.. +.+.......+ ...++.|+.|.+.++ .+.+.+ +......++.|+.|+++++ . +...+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 234 (482)
T KOG1947|consen 162 NLESLSLSCCGSLLLDKILLRL---LSSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLL- 234 (482)
T ss_pred HHheeeeecccccccHHHHHHH---HhhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhH-
Confidence 344444443 33444433333 334688999999887 566544 4455667899999999873 2 3332222
Q ss_pred HHHHhhcCCCCCEEecCCCC-CChHHHHHHHHHHccCCcccEEecCCCC-CCchHHHHHHHHHhcCCCCccEEEccCCC-
Q 008824 331 LSEALESCTHLKKLDLRDNM-FGVEAGVALSKALSNYADLTEVYLSYLN-LEDDGTVAITNALKGSAPLLEVLELAGND- 407 (552)
Q Consensus 331 l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 407 (552)
.......+++|+.|+++++. +++.+...+.. .|++|+.|.+..+. +++.++..++.. ++.|++|++++|.
T Consensus 235 ~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~---~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 235 LLLLLSICRKLKSLDLSGCGLVTDIGLSALAS---RCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHG 307 (482)
T ss_pred hhhhhhhcCCcCccchhhhhccCchhHHHHHh---hCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCcc
Confidence 22244567899999999988 78776555443 38899999988886 899998888763 5779999999887
Q ss_pred CCcchHHHHHHHhhcCCCcCEEEccCCC----CCchHHHHH--------HHHHhhCCCCccEEEccCCCCCHHHHHHHHH
Q 008824 408 ITVEAAPVISACVAAKQHLTKLNLAENE----LKDDGAIQI--------SKALEQGHDQLKVVDMSSNFIRRAGARQLAQ 475 (552)
Q Consensus 408 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~----l~d~g~~~l--------~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 475 (552)
+++.+...+ ...+++|+.|.+.... +++.++..+ .......++.|+.+.+.++.+++.|...+.
T Consensus 308 ~~d~~l~~~---~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l- 383 (482)
T KOG1947|consen 308 LTDSGLEAL---LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSL- 383 (482)
T ss_pred chHHHHHHH---HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHh-
Confidence 445444443 3446777776544332 444443222 112222688889999988887776643333
Q ss_pred HHhcCCC--------------ccEEEecCCC-CCHHHHHHHHHH
Q 008824 476 VVIQKPG--------------FKQLNIDANI-ISEEGIDEVKEI 504 (552)
Q Consensus 476 ~l~~~~~--------------L~~L~L~~N~-i~~~g~~~l~~~ 504 (552)
.+++. ++.|++..+. .++.++..+...
T Consensus 384 --~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~ 425 (482)
T KOG1947|consen 384 --RGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS 425 (482)
T ss_pred --cCCcccchHHHHHhccCCccceEecccCccccccchHHHhhh
Confidence 23443 4788887775 677777777766
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.8e-06 Score=81.35 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=114.5
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008824 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
..++.|||.+|.|++ +..++..+.+++.|+.|+|+.|.++... ..+. ....+|+.|-|.+..+.- ...-..
T Consensus 71 ~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I-~~lp---~p~~nl~~lVLNgT~L~w---~~~~s~ 141 (418)
T KOG2982|consen 71 TDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDI-KSLP---LPLKNLRVLVLNGTGLSW---TQSTSS 141 (418)
T ss_pred hhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCcc-ccCc---ccccceEEEEEcCCCCCh---hhhhhh
Confidence 578888888888875 5667778888888888888888876532 1111 123578888888877653 224445
Q ss_pred hhcCCCccEEEeeCCCC-----ChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCc
Q 008824 307 VKHSPLLEDFRCSSTRI-----GSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLED 381 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l-----~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~ 381 (552)
+..+|.++.|++|.|.+ .+..... ..+.+++|.+..|.... .....+.-..+|++..+.+..|.+.+
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~------~s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~sv~v~e~PlK~ 213 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNLDDNCIED------WSTEVLTLHQLPCLEQL--WLNKNKLSRIFPNVNSVFVCEGPLKT 213 (418)
T ss_pred hhcchhhhhhhhccchhhhhccccccccc------cchhhhhhhcCCcHHHH--HHHHHhHHhhcccchheeeecCcccc
Confidence 66677788888888732 2221111 12245555555554321 22233334456777777777777665
Q ss_pred hHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCc
Q 008824 382 DGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKD 438 (552)
Q Consensus 382 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d 438 (552)
..... +. .+.+.+..|+|+.+.|..-+. + ..+...+.|+.|.+++|.+.|
T Consensus 214 ~s~ek---~s-e~~p~~~~LnL~~~~idswas--v-D~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 214 ESSEK---GS-EPFPSLSCLNLGANNIDSWAS--V-DALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhcc---cC-CCCCcchhhhhcccccccHHH--H-HHHcCCchhheeeccCCcccc
Confidence 33221 11 235677778888888765322 2 224445888888888887765
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=5.7e-06 Score=90.41 Aligned_cols=90 Identities=16% Similarity=0.290 Sum_probs=37.2
Q ss_pred ccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHh
Q 008824 313 LEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALK 392 (552)
Q Consensus 313 L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 392 (552)
++.|+|++|.+... ++..+..+++|+.|+|++|.+... ++..+..+++|+.|+|++|.+....+..+.
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~---- 487 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSIPESLG---- 487 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCCchHHh----
Confidence 33444444444322 333444444444444444444321 233344444444444444444433222221
Q ss_pred cCCCCccEEEccCCCCCcchHHH
Q 008824 393 GSAPLLEVLELAGNDITVEAAPV 415 (552)
Q Consensus 393 ~~~~~L~~L~Ls~n~l~~~~~~~ 415 (552)
.+++|+.|+|++|.++...+..
T Consensus 488 -~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 488 -QLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred -cCCCCCEEECcCCcccccCChH
Confidence 1344444444444444433333
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.98 E-value=2.5e-06 Score=95.49 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=40.7
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 008824 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAAR 273 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 273 (552)
+.|+.|||++|.-...-+..+..+ .+|++|+|++..+.. ++..++.++.|.+|++..+.--...
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~L---------i~LryL~L~~t~I~~-----LP~~l~~Lk~L~~Lnl~~~~~l~~~-- 634 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGEL---------VHLRYLDLSDTGISH-----LPSGLGNLKKLIYLNLEVTGRLESI-- 634 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhh---------hhhhcccccCCCccc-----cchHHHHHHhhheeccccccccccc--
Confidence 566666666554433333333333 366666666665552 4444555566666666654421111
Q ss_pred HHHHhcCCCCCccEEEcccC
Q 008824 274 AVCELIPSTEKLRVLQFHNN 293 (552)
Q Consensus 274 ~l~~~l~~~~~L~~L~Ls~n 293 (552)
...+..+.+|++|.+...
T Consensus 635 --~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 635 --PGILLELQSLRVLRLPRS 652 (889)
T ss_pred --cchhhhcccccEEEeecc
Confidence 111222456666666544
No 56
>PLN03150 hypothetical protein; Provisional
Probab=97.94 E-value=1.4e-05 Score=87.35 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=69.7
Q ss_pred CCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHh
Q 008824 341 LKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACV 420 (552)
Q Consensus 341 L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 420 (552)
++.|+|++|.+... ++..+..+++|+.|+|++|.+.+..+..+. .+++|+.|+|++|.++...+..++.+
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-----~l~~L~~LdLs~N~lsg~iP~~l~~L- 489 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGNIPPSLG-----SITSLEVLDLSYNSFNGSIPESLGQL- 489 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCcCChHHh-----CCCCCCEEECCCCCCCCCCchHHhcC-
Confidence 66778888777643 466677778888888888877654333332 26778888888888777666555444
Q ss_pred hcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCC
Q 008824 421 AAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNF 464 (552)
Q Consensus 421 ~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~ 464 (552)
++|+.|+|++|.++..-+..+.. ...++..+++.+|.
T Consensus 490 ---~~L~~L~Ls~N~l~g~iP~~l~~----~~~~~~~l~~~~N~ 526 (623)
T PLN03150 490 ---TSLRILNLNGNSLSGRVPAALGG----RLLHRASFNFTDNA 526 (623)
T ss_pred ---CCCCEEECcCCcccccCChHHhh----ccccCceEEecCCc
Confidence 78888888888776543333321 23455667777764
No 57
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.85 E-value=4.9e-06 Score=83.14 Aligned_cols=319 Identities=18% Similarity=0.100 Sum_probs=182.6
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008824 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
+.++.++++.|.++....-.+.. ..--|+++.|.++......+. .---...+++++|+.|...+...
T Consensus 165 pr~r~~dls~npi~dkvpihl~~-------p~~pl~lr~c~lsskfis~l~------~qsg~~~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ-------PGNPLSLRVCELSSKFISKLL------IQSGRLWLTELDLSTNGGKDDIP 231 (553)
T ss_pred chhhhhccCCCcccccCCccccC-------CCCccchhhhhhhhhHHHHhh------hhhccccccccccccCCCCccch
Confidence 55677777777776543322111 111155555555432211111 00002478888888887665433
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHh-cCCCCCccEEEcccCCCCh----HHHHHHHHHhhcCCCccEEEee
Q 008824 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCEL-IPSTEKLRVLQFHNNMTGD----EGAQAISDVVKHSPLLEDFRCS 319 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~----~g~~~l~~~l~~~~~L~~L~ls 319 (552)
. +.........++.++.+...+.-.- .+..+ ....++|+..+++.|.... +|....-+.+..-+++ +|++.
T Consensus 232 ~-~~n~~a~~~vl~~ld~s~tgirlD~--l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~ 307 (553)
T KOG4242|consen 232 R-TLNKKAGTLVLFKLDRSTTGIRLDL--LTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSR 307 (553)
T ss_pred h-HHHHhhhhhhhhcccccccccchhh--cccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccc
Confidence 3 3333334456788888777664321 11111 1334677777777774432 2222233333344566 77777
Q ss_pred CCCCChHHHHHHHHHhhcCCCCC--EEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCC
Q 008824 320 STRIGSEGGTALSEALESCTHLK--KLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPL 397 (552)
Q Consensus 320 ~n~l~~~~~~~l~~~l~~~~~L~--~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~ 397 (552)
.++...+-...+.-.+....... .+++..|...... .+ .+-..-..+++|.+..|++...+-... .+.. .+.
T Consensus 308 ~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~--vl-eaci~g~R~q~l~~rdnnldgeg~~vg--k~~~-s~s 381 (553)
T KOG4242|consen 308 PRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAE--VL-EACIFGQRVQVLLQRDNNLDGEGGAVG--KRKQ-SKS 381 (553)
T ss_pred cccCchhhhhhhhcccccccccccccCChhhccccccc--hh-hccccceeeeEeecccccccccccccc--ceee-ccc
Confidence 77776665555544444443332 4566666654421 12 122222358888888888777654433 2222 356
Q ss_pred ccEEEccCCCC---CcchH--HHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHH
Q 008824 398 LEVLELAGNDI---TVEAA--PVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQ 472 (552)
Q Consensus 398 L~~L~Ls~n~l---~~~~~--~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~ 472 (552)
++.+++....- -+... ..++..=....-+..+.++.|.++ .++......+. ..+.+..|++++|..++.|...
T Consensus 382 ~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lk-a~l~s~in~l~-stqtl~kldisgn~mgd~gap~ 459 (553)
T KOG4242|consen 382 GRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLK-AGLESAINKLL-STQTLAKLDISGNGMGDGGAPP 459 (553)
T ss_pred cccccccccCCceeccccccchhhhhhhcccccccCcccCCCccc-ccHHHHHHhhc-cCcccccccccCCCcccCCCCc
Confidence 77777765331 11111 111111111235788888888776 45555666666 7888888999999888888888
Q ss_pred HHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhcC
Q 008824 473 LAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNS 508 (552)
Q Consensus 473 l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~ 508 (552)
++++++.+..++.+..+.|.+++.|+..+...++.+
T Consensus 460 lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 460 LPKALQSNCRLRPIPDSLNLPEDPGLGPRNEERPLN 495 (553)
T ss_pred CccccCCCCccCCCCCCCCCccccccchhhhhcccc
Confidence 888888888889999999999888888888877766
No 58
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.79 E-value=1.7e-05 Score=79.45 Aligned_cols=293 Identities=17% Similarity=0.077 Sum_probs=191.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCC-HHHHHHHH
Q 008824 170 ICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALG-EKGVRAFG 248 (552)
Q Consensus 170 L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~l~ 248 (552)
+.++.|.++.....-+. .++....+++++|+.|...+..+..+.. ...+..+++++.+...+. +..+..+.
T Consensus 192 l~lr~c~lsskfis~l~--~qsg~~~lteldls~n~~Kddip~~~n~------~a~~~vl~~ld~s~tgirlD~l~~~l~ 263 (553)
T KOG4242|consen 192 LSLRVCELSSKFISKLL--IQSGRLWLTELDLSTNGGKDDIPRTLNK------KAGTLVLFKLDRSTTGIRLDLLTSPLA 263 (553)
T ss_pred cchhhhhhhhhHHHHhh--hhhccccccccccccCCCCccchhHHHH------hhhhhhhhcccccccccchhhcccccc
Confidence 77888888765544332 3344468999999999877665544322 222357888888887554 22222222
Q ss_pred HHHhcCCCccEEEeeCCCCCH----HHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCC--ccEEEeeCCC
Q 008824 249 ALLESQSSLEELYLMNDGISK----EAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPL--LEDFRCSSTR 322 (552)
Q Consensus 249 ~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~--L~~L~ls~n~ 322 (552)
. +.-+.+...+++.|..+. ++.....+....-.++ +|++.++....+....+.-.+..... =-.+++..|.
T Consensus 264 ~--g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp 340 (553)
T KOG4242|consen 264 A--GRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCP 340 (553)
T ss_pred c--ccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcc
Confidence 1 223568888888776432 2333444455556777 88888888877665555433333322 2245666666
Q ss_pred CChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCC---CchHHHHHHHHH-hcCCCCc
Q 008824 323 IGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNL---EDDGTVAITNAL-KGSAPLL 398 (552)
Q Consensus 323 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l---~~~~~~~l~~~l-~~~~~~L 398 (552)
..... ..++-.+-.+++.|.+++|++..++.... .+.+.++++.+++....- -+.+........ ....--+
T Consensus 341 ~~~a~---vleaci~g~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l 415 (553)
T KOG4242|consen 341 LERAE---VLEACIFGQRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVL 415 (553)
T ss_pred ccccc---hhhccccceeeeEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccc
Confidence 55422 22333334579999999999887754443 566778899998866432 221111111111 1112357
Q ss_pred cEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHh
Q 008824 399 EVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVI 478 (552)
Q Consensus 399 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~ 478 (552)
..+.++.|.+.. ....+.+.+...+++..|++++|..++.|...+++++. .+..++.+..+.|.+++.|+..+...+.
T Consensus 416 ~el~ls~~~lka-~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq-~n~rlr~ipds~n~p~~~gl~p~~~~~p 493 (553)
T KOG4242|consen 416 AELSLSPGPLKA-GLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ-SNCRLRPIPDSLNLPEDPGLGPRNEERP 493 (553)
T ss_pred cCcccCCCcccc-cHHHHHHhhccCcccccccccCCCcccCCCCcCccccC-CCCccCCCCCCCCCccccccchhhhhcc
Confidence 888999998876 55667777788899999999999999999999999999 8999999999999999988777776654
Q ss_pred cC
Q 008824 479 QK 480 (552)
Q Consensus 479 ~~ 480 (552)
.+
T Consensus 494 ~n 495 (553)
T KOG4242|consen 494 LN 495 (553)
T ss_pred cc
Confidence 33
No 59
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.76 E-value=4.1e-06 Score=61.54 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=5.6
Q ss_pred CCcCEEEccCCCC
Q 008824 424 QHLTKLNLAENEL 436 (552)
Q Consensus 424 ~~L~~L~Ls~n~l 436 (552)
++|++|++++|.|
T Consensus 25 ~~L~~L~l~~N~l 37 (61)
T PF13855_consen 25 PNLETLDLSNNNL 37 (61)
T ss_dssp TTESEEEETSSSE
T ss_pred CCCCEeEccCCcc
Confidence 4444444444443
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=1.1e-05 Score=75.40 Aligned_cols=120 Identities=25% Similarity=0.326 Sum_probs=80.8
Q ss_pred CCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHH
Q 008824 366 YADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQIS 445 (552)
Q Consensus 366 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~ 445 (552)
+.+.+.|+++++.|++.. ++. .++.|++|.|+-|.|+...+ +..|++|++|+|..|.|.+..-.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~----kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL--- 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICE----KMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDEL--- 81 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHH----hcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHH---
Confidence 456778888888888743 222 26788888888888876443 44558899999999988764332
Q ss_pred HHHhhCCCCccEEEccCCC-CCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhc
Q 008824 446 KALEQGHDQLKVVDMSSNF-IRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKN 507 (552)
Q Consensus 446 ~~L~~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 507 (552)
+-|+ ++++|+.|+|..|. ....|-..=..+|.-+|+|+.|| +-.++++ ++.++++.
T Consensus 82 ~YLk-nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~Vtee---Ele~ALr~ 138 (388)
T KOG2123|consen 82 EYLK-NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEE---ELEEALRD 138 (388)
T ss_pred HHHh-cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHH---HHHHHHhc
Confidence 2344 78889999998884 44555566667777788888875 3344443 44445543
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.64 E-value=6.2e-06 Score=60.55 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=27.9
Q ss_pred cccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCC
Q 008824 368 DLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENE 435 (552)
Q Consensus 368 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 435 (552)
+|+.|++++|++...... ....+++|++|++++|.++...+.. +..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~-----~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPD-----SFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTT-----TTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHH-----HHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCc
Confidence 455555555555442111 1122455566666655555433322 3333566666666554
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=1.5e-05 Score=66.80 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=49.4
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHh
Q 008824 228 VLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVV 307 (552)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 307 (552)
.+..++|++|.+... .+ ....+....+|+..+|++|.+.+...+ + ....+.++.|++++|.+.+ ++..+
T Consensus 28 E~h~ldLssc~lm~i-~d-avy~l~~~~el~~i~ls~N~fk~fp~k-f---t~kf~t~t~lNl~~neisd-----vPeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYI-AD-AVYMLSKGYELTKISLSDNGFKKFPKK-F---TIKFPTATTLNLANNEISD-----VPEEL 96 (177)
T ss_pred HhhhcccccchhhHH-HH-HHHHHhCCceEEEEecccchhhhCCHH-H---hhccchhhhhhcchhhhhh-----chHHH
Confidence 344555666554421 11 112223334555556665555322211 1 1122445555555555554 44445
Q ss_pred hcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCC
Q 008824 308 KHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFG 352 (552)
Q Consensus 308 ~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 352 (552)
..++.|+.|+++.|++.. .++.+..+.++-.|+..+|.+-
T Consensus 97 Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCccc
Confidence 555555555555555543 2333333444455555555443
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.48 E-value=9.7e-05 Score=49.93 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=19.2
Q ss_pred CccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008824 454 QLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 454 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
+|++|++++|.|++ +...+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 45566666666554 3333555666666666666655
No 64
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.46 E-value=4.3e-05 Score=85.81 Aligned_cols=83 Identities=22% Similarity=0.165 Sum_probs=41.6
Q ss_pred CCCCCccEEEcccC-CCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHH
Q 008824 280 PSTEKLRVLQFHNN-MTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVA 358 (552)
Q Consensus 280 ~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 358 (552)
..++.|++|||++| .++. +|..++.+-+|++|+++++.+.. +|..+..++.|.+|++..+.....
T Consensus 568 ~~m~~LrVLDLs~~~~l~~-----LP~~I~~Li~LryL~L~~t~I~~-----LP~~l~~Lk~L~~Lnl~~~~~l~~---- 633 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSK-----LPSSIGELVHLRYLDLSDTGISH-----LPSGLGNLKKLIYLNLEVTGRLES---- 633 (889)
T ss_pred hhCcceEEEECCCCCccCc-----CChHHhhhhhhhcccccCCCccc-----cchHHHHHHhhheecccccccccc----
Confidence 33455666666654 2232 55555555556666666555543 555555555566665555432111
Q ss_pred HHHHHccCCcccEEecCC
Q 008824 359 LSKALSNYADLTEVYLSY 376 (552)
Q Consensus 359 L~~~l~~~~~L~~L~L~~ 376 (552)
++..+..+++|++|.+..
T Consensus 634 ~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 634 IPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccchhhhcccccEEEeec
Confidence 122233355555555543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=1.5e-05 Score=74.56 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=72.4
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHH
Q 008824 395 APLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLA 474 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~ 474 (552)
+.+.+.|++.||++++.. + ...++.|+.|.|+-|.|+. .+.+. .|++|++|.|..|.|.+. ..+
T Consensus 18 l~~vkKLNcwg~~L~DIs---i---c~kMp~lEVLsLSvNkIss------L~pl~-rCtrLkElYLRkN~I~sl--dEL- 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---I---CEKMPLLEVLSLSVNKISS------LAPLQ-RCTRLKELYLRKNCIESL--DEL- 81 (388)
T ss_pred HHHhhhhcccCCCccHHH---H---HHhcccceeEEeecccccc------chhHH-HHHHHHHHHHHhcccccH--HHH-
Confidence 456789999999998743 2 3455999999999999986 44455 799999999999999874 233
Q ss_pred HHHhcCCCccEEEecCCCCCHHHHHHHHH
Q 008824 475 QVVIQKPGFKQLNIDANIISEEGIDEVKE 503 (552)
Q Consensus 475 ~~l~~~~~L~~L~L~~N~i~~~g~~~l~~ 503 (552)
..|.++|+|+.|.|..|+....+-.....
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~ 110 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRR 110 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHH
Confidence 34778999999999999977665555443
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=5.6e-05 Score=63.49 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=75.6
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhc-CCCccEEEeeCCCCChHHHHHHHH
Q 008824 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKH-SPLLEDFRCSSTRIGSEGGTALSE 333 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~ls~n~l~~~~~~~l~~ 333 (552)
..+..++|+.|++... ...+. .+.....|+..+|++|.+.+ ++.-+.. .+.+++|+|++|.|.+ +|.
T Consensus 27 kE~h~ldLssc~lm~i-~davy-~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisd-----vPe 94 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYI-ADAVY-MLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISD-----VPE 94 (177)
T ss_pred HHhhhcccccchhhHH-HHHHH-HHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhh-----chH
Confidence 3467788888887422 12222 33445678888899888776 5544433 4578888888888876 666
Q ss_pred HhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCc
Q 008824 334 ALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLED 381 (552)
Q Consensus 334 ~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~ 381 (552)
.+..++.|+.|+++.|.+... ++.+..+.++-.|+...|.+..
T Consensus 95 E~Aam~aLr~lNl~~N~l~~~-----p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNPLNAE-----PRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred HHhhhHHhhhcccccCccccc-----hHHHHHHHhHHHhcCCCCcccc
Confidence 777888888888888888763 5666666677777777665544
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.33 E-value=0.00022 Score=48.17 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=17.1
Q ss_pred CccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008824 284 KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 284 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
+|++|++++|.|.+ ++..+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 44555555555554 4444455555555555555544
No 68
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=97.28 E-value=0.0011 Score=64.01 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=86.0
Q ss_pred cCCcccEEecCCC-CCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHH
Q 008824 365 NYADLTEVYLSYL-NLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQ 443 (552)
Q Consensus 365 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~ 443 (552)
.-+.++.++++.+ +|...-...++.++..+ ++.+.+.+.+-...+..+..++.++..|++|++|++..|.|+..|+.+
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~n-t~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a 274 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNN-THVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMA 274 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcC-chhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHH
Confidence 3467777777776 56666666677777653 677777777777777777777777777888888888888888888888
Q ss_pred HHHHHhhCCCCccEEEccCC--CCCHHHHHHHHHHHhcCCCccEEEec
Q 008824 444 ISKALEQGHDQLKVVDMSSN--FIRRAGARQLAQVVIQKPGFKQLNID 489 (552)
Q Consensus 444 l~~~L~~~~~~L~~L~Ls~n--~i~~~g~~~l~~~l~~~~~L~~L~L~ 489 (552)
+..+|. .+.+|.++...+- .++......++..+..+.+|-.+-+.
T Consensus 275 ~~~al~-~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~ 321 (353)
T KOG3735|consen 275 LLRALQ-SNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYH 321 (353)
T ss_pred HHHHHh-ccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccccc
Confidence 888877 7777777655443 34445555666666667666555443
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00012 Score=65.58 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=6.7
Q ss_pred CCccEEEeeCCCCC
Q 008824 255 SSLEELYLMNDGIS 268 (552)
Q Consensus 255 ~~L~~L~L~~n~i~ 268 (552)
..|.+|.|.+|.|+
T Consensus 64 ~rL~tLll~nNrIt 77 (233)
T KOG1644|consen 64 PRLHTLLLNNNRIT 77 (233)
T ss_pred cccceEEecCCcce
Confidence 44444444444444
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00029 Score=63.35 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCC-CCCchHHHHHHHHHhhCCCCccEEEccCC-CCCHHHHHHH
Q 008824 396 PLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAEN-ELKDDGAIQISKALEQGHDQLKVVDMSSN-FIRRAGARQL 473 (552)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n-~i~~~g~~~l 473 (552)
..++.++-+++.|..+|...+..+ +.++.|.+.+| .+.|.++..+.. ..++|+.|+|++| +||+.|...+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHH
Confidence 457788888888888787776555 88888888888 588877777765 5689999999988 7999887666
Q ss_pred HHHHhcCCCccEEEecCCCC-C--HHHHHHHHHHHhcC
Q 008824 474 AQVVIQKPGFKQLNIDANII-S--EEGIDEVKEIFKNS 508 (552)
Q Consensus 474 ~~~l~~~~~L~~L~L~~N~i-~--~~g~~~l~~~l~~~ 508 (552)
.. +++|+.|.|.+=+- . +.....+.++|.++
T Consensus 173 ~~----lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c 206 (221)
T KOG3864|consen 173 LK----LKNLRRLHLYDLPYVANLELVQRQLEEALPKC 206 (221)
T ss_pred HH----hhhhHHHHhcCchhhhchHHHHHHHHHhCccc
Confidence 55 78888888876542 1 22334455566655
No 71
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=97.17 E-value=0.00091 Score=64.59 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=78.9
Q ss_pred CCccEEEcCCC-CCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH
Q 008824 227 SVLKSLNLSDN-ALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD 305 (552)
Q Consensus 227 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 305 (552)
+.++..+|+++ .|....+..++..++..++.+...+.+.+.++..+.+++.++..++.|++|++.+|.|+..|+..+..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 57777778777 67777777788888777778888887777777777777777777777777777777777777777777
Q ss_pred HhhcCCCccEEEeeCCC--CChHHHHHHHHHhhcCCCCCEE
Q 008824 306 VVKHSPLLEDFRCSSTR--IGSEGGTALSEALESCTHLKKL 344 (552)
Q Consensus 306 ~l~~~~~L~~L~ls~n~--l~~~~~~~l~~~l~~~~~L~~L 344 (552)
++....+|..+...+-+ ++......++..+..+.+|-.+
T Consensus 278 al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~ 318 (353)
T KOG3735|consen 278 ALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKF 318 (353)
T ss_pred HHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccc
Confidence 77766666666543222 3333333344444444444333
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00016 Score=64.89 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=16.3
Q ss_pred CccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCCh
Q 008824 284 KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGS 325 (552)
Q Consensus 284 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~ 325 (552)
+...++|++|.+.. + ..+.+++.|.+|.+++|+|+.
T Consensus 43 ~~d~iDLtdNdl~~-----l-~~lp~l~rL~tLll~nNrIt~ 78 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-----L-DNLPHLPRLHTLLLNNNRITR 78 (233)
T ss_pred ccceecccccchhh-----c-ccCCCccccceEEecCCccee
Confidence 44445555554432 1 123444455555555555443
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=97.07 E-value=0.0008 Score=40.45 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=17.3
Q ss_pred CCccEEEecCCCCCHHHHHHHHHHHh
Q 008824 481 PGFKQLNIDANIISEEGIDEVKEIFK 506 (552)
Q Consensus 481 ~~L~~L~L~~N~i~~~g~~~l~~~l~ 506 (552)
++|+.|+|++|.|+++|+..++++++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 45666677777777777666666654
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00035 Score=65.40 Aligned_cols=64 Identities=30% Similarity=0.387 Sum_probs=29.8
Q ss_pred CCCccEEEccCCCCCcc-hHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008824 395 APLLEVLELAGNDITVE-AAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
+++|+.|.++.|.+... +...+ +..+++|++|+|++|.|.+ +.. .+.++ ...+|..||+..|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~--lst-l~pl~-~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKD--LST-LRPLK-ELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCcccc--ccc-cchhh-hhcchhhhhcccCCc
Confidence 45666666666632211 11122 2223666666666666554 111 11222 344555666666543
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.92 E-value=0.0012 Score=39.66 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=15.5
Q ss_pred CCcCEEEccCCCCCchHHHHHHHHHh
Q 008824 424 QHLTKLNLAENELKDDGAIQISKALE 449 (552)
Q Consensus 424 ~~L~~L~Ls~n~l~d~g~~~l~~~L~ 449 (552)
++|+.|+|++|.|++.|+..++++|.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 45666666666666666666665543
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.48 E-value=0.0029 Score=64.26 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=71.2
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCC-CCCHHH
Q 008824 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDN-ALGEKG 243 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n-~l~~~~ 243 (552)
.+++.|++++|.+... ...+.+|++|.+++|.--...+..+. .+|++|++++| .+..
T Consensus 52 ~~l~~L~Is~c~L~sL---------P~LP~sLtsL~Lsnc~nLtsLP~~LP-----------~nLe~L~Ls~Cs~L~s-- 109 (426)
T PRK15386 52 RASGRLYIKDCDIESL---------PVLPNELTEITIENCNNLTTLPGSIP-----------EGLEKLTVCHCPEISG-- 109 (426)
T ss_pred cCCCEEEeCCCCCccc---------CCCCCCCcEEEccCCCCcccCCchhh-----------hhhhheEccCcccccc--
Confidence 6788888888876422 13356788888877432111111111 47888888877 4431
Q ss_pred HHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCC-CChHHHHHHHHHhhcCCCccEEEeeCCC
Q 008824 244 VRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNM-TGDEGAQAISDVVKHSPLLEDFRCSSTR 322 (552)
Q Consensus 244 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~ls~n~ 322 (552)
+ ..+|+.|++.++..... . .-.++|+.|.+.++. .... .++.. -.++|++|++++|.
T Consensus 110 ---L------P~sLe~L~L~~n~~~~L-----~---~LPssLk~L~I~~~n~~~~~---~lp~~--LPsSLk~L~Is~c~ 167 (426)
T PRK15386 110 ---L------PESVRSLEIKGSATDSI-----K---NVPNGLTSLSINSYNPENQA---RIDNL--ISPSLKTLSLTGCS 167 (426)
T ss_pred ---c------ccccceEEeCCCCCccc-----c---cCcchHhheecccccccccc---ccccc--cCCcccEEEecCCC
Confidence 1 25677777776554321 1 112456677764432 1100 01110 11467888887776
Q ss_pred CChHHHHHHHHHhhcCCCCCEEecCCCC
Q 008824 323 IGSEGGTALSEALESCTHLKKLDLRDNM 350 (552)
Q Consensus 323 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 350 (552)
... ++..+. .+|+.|+++.+.
T Consensus 168 ~i~-----LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 168 NII-----LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccc-----Cccccc--ccCcEEEecccc
Confidence 432 222222 377777776653
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.26 E-value=0.0031 Score=36.34 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=12.5
Q ss_pred CCccEEEecCCCCCHHHHHHHH
Q 008824 481 PGFKQLNIDANIISEEGIDEVK 502 (552)
Q Consensus 481 ~~L~~L~L~~N~i~~~g~~~l~ 502 (552)
++|+.|+|++|.|+++|+..|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5566666666666666666554
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.0034 Score=56.58 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=41.7
Q ss_pred CCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCC-CCCchHHHHHHHHHhcCCCCccEEEccCCC-CCcchHHHHHH
Q 008824 341 LKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYL-NLEDDGTVAITNALKGSAPLLEVLELAGND-ITVEAAPVISA 418 (552)
Q Consensus 341 L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 418 (552)
++.+|-+++.|..+| ...+..++.|+.|.+..+ ++.+.++..+.. ..++|+.|++++|. ||+.+..-|..
T Consensus 103 IeaVDAsds~I~~eG----le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG----LEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred EEEEecCCchHHHHH----HHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHH
Confidence 444555555554444 233344555555555555 455555554443 13566666666655 66555544443
Q ss_pred HhhcCCCcCEEEccC
Q 008824 419 CVAAKQHLTKLNLAE 433 (552)
Q Consensus 419 ~l~~~~~L~~L~Ls~ 433 (552)
+ ++|+.|.|.+
T Consensus 175 l----knLr~L~l~~ 185 (221)
T KOG3864|consen 175 L----KNLRRLHLYD 185 (221)
T ss_pred h----hhhHHHHhcC
Confidence 3 5666665544
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.95 E-value=0.0042 Score=35.77 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=8.9
Q ss_pred CCcCEEEccCCCCCchHHHHH
Q 008824 424 QHLTKLNLAENELKDDGAIQI 444 (552)
Q Consensus 424 ~~L~~L~Ls~n~l~d~g~~~l 444 (552)
++|++|+|++|.|++.|+..|
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 344444444444444444443
No 80
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.005 Score=57.78 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHccCCcccEEecCCCCCCch-HHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCC
Q 008824 362 ALSNYADLTEVYLSYLNLEDD-GTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENE 435 (552)
Q Consensus 362 ~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 435 (552)
.+..+++|+.|.++.|..... ++..++. .+++|++|++++|.+.. ...+ .-++...+|..|++.+|.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e----~~P~l~~l~ls~Nki~~--lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAE----KAPNLKVLNLSGNKIKD--LSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhh----hCCceeEEeecCCcccc--cccc-chhhhhcchhhhhcccCC
Confidence 344555666666666532221 1111221 23566666666666553 1111 112223566666666664
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.33 E-value=0.035 Score=56.55 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=53.0
Q ss_pred HHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCC-CChHHHHHHHHHHccCCcccEEecCCC-CCCch
Q 008824 305 DVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNM-FGVEAGVALSKALSNYADLTEVYLSYL-NLEDD 382 (552)
Q Consensus 305 ~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~L~~L~L~~n-~l~~~ 382 (552)
.-+..+..++.|++++|.|.. ++. -..+|+.|.+++|. ++. ++..+ .++|+.|++++| .+..
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~s-----LP~---LP~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~Cs~L~s- 109 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIES-----LPV---LPNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHCPEISG- 109 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcc-----cCC---CCCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCcccccc-
Confidence 336667999999999998775 441 22379999998864 322 33333 258999999988 5432
Q ss_pred HHHHHHHHHhcCCCCccEEEccCCCCC
Q 008824 383 GTVAITNALKGSAPLLEVLELAGNDIT 409 (552)
Q Consensus 383 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 409 (552)
+ ..+|+.|++.++...
T Consensus 110 ----L-------P~sLe~L~L~~n~~~ 125 (426)
T PRK15386 110 ----L-------PESVRSLEIKGSATD 125 (426)
T ss_pred ----c-------ccccceEEeCCCCCc
Confidence 2 257888888776543
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.71 E-value=0.07 Score=31.27 Aligned_cols=22 Identities=23% Similarity=0.690 Sum_probs=12.2
Q ss_pred CCccEEEecCCC-CCHHHHHHHH
Q 008824 481 PGFKQLNIDANI-ISEEGIDEVK 502 (552)
Q Consensus 481 ~~L~~L~L~~N~-i~~~g~~~l~ 502 (552)
+.|+.|+|++|+ |+|.|+..+.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 455555555553 5555555554
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.99 E-value=0.11 Score=30.41 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=11.1
Q ss_pred CCccEEEccCC-CCCHHHHHHHH
Q 008824 453 DQLKVVDMSSN-FIRRAGARQLA 474 (552)
Q Consensus 453 ~~L~~L~Ls~n-~i~~~g~~~l~ 474 (552)
++|++|+|++| .|+|.|+..++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 44555555555 35555544443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.38 E-value=1.5 Score=45.99 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCC--CCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008824 394 SAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAEN--ELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 394 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
+.+.+..++|++|.+... ..+..+....|+|+.|+|++| .+.+ ...+.+ + ....|++|.+.||.|.
T Consensus 216 n~p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~--~~el~K-~--k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISS--ESELDK-L--KGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcc--hhhhhh-h--cCCCHHHeeecCCccc
Confidence 345566666666665431 223333334566777777776 3322 111111 1 2455666777777653
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.38 E-value=0.69 Score=24.00 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=5.2
Q ss_pred CccEEEecCCCCC
Q 008824 482 GFKQLNIDANIIS 494 (552)
Q Consensus 482 ~L~~L~L~~N~i~ 494 (552)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.47 E-value=10 Score=40.07 Aligned_cols=75 Identities=25% Similarity=0.308 Sum_probs=37.7
Q ss_pred HHhhhhCCCCCceEEEecCCCCCH-HHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEc
Q 008824 156 ILRPLKEPGNSYTKICFSNRSFGL-EAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNL 234 (552)
Q Consensus 156 ~l~~l~~~~~~l~~L~ls~~~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~L 234 (552)
.++....+.+.+..++|++|++-. +.... +....++|+.|+|++|..-......+..+ .+..|++|-+
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~ss----lsq~apklk~L~LS~N~~~~~~~~el~K~-------k~l~Leel~l 277 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSS----LSQIAPKLKTLDLSHNHSKISSESELDKL-------KGLPLEELVL 277 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhH----HHHhcchhheeecccchhhhcchhhhhhh-------cCCCHHHeee
Confidence 334455555677777777777632 22222 22224677777777762111111112111 2246666677
Q ss_pred CCCCCCH
Q 008824 235 SDNALGE 241 (552)
Q Consensus 235 s~n~l~~ 241 (552)
.+|.+..
T Consensus 278 ~GNPlc~ 284 (585)
T KOG3763|consen 278 EGNPLCT 284 (585)
T ss_pred cCCcccc
Confidence 7776653
No 87
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=71.99 E-value=1.9 Score=23.93 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=9.3
Q ss_pred CccEEEecCCCCC
Q 008824 482 GFKQLNIDANIIS 494 (552)
Q Consensus 482 ~L~~L~L~~N~i~ 494 (552)
+|++|+|++|.|+
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677777777765
No 88
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.09 E-value=1.7 Score=47.79 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=8.7
Q ss_pred hhcCCCcCEEEccCCCCC
Q 008824 420 VAAKQHLTKLNLAENELK 437 (552)
Q Consensus 420 l~~~~~L~~L~Ls~n~l~ 437 (552)
|..-|.|-.-.+.+|.-+
T Consensus 1296 Lh~VP~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1296 LHSVPSLDQCAVTFNSTG 1313 (1516)
T ss_pred HhcCccccceEEEeccCc
Confidence 444455555555555433
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=60.31 E-value=1.5 Score=37.00 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=5.1
Q ss_pred CCCcCEEEccC
Q 008824 423 KQHLTKLNLAE 433 (552)
Q Consensus 423 ~~~L~~L~Ls~ 433 (552)
+++|+.+.+..
T Consensus 80 ~~~l~~i~~~~ 90 (129)
T PF13306_consen 80 CTNLKNIDIPS 90 (129)
T ss_dssp -TTECEEEETT
T ss_pred cccccccccCc
Confidence 35555555543
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.84 E-value=8 Score=22.63 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=6.4
Q ss_pred CccEEEccCCCC
Q 008824 454 QLKVVDMSSNFI 465 (552)
Q Consensus 454 ~L~~L~Ls~n~i 465 (552)
+|+.|++++|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 455555555554
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=57.52 E-value=10 Score=21.71 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=5.6
Q ss_pred CccEEEccCCCCC
Q 008824 397 LLEVLELAGNDIT 409 (552)
Q Consensus 397 ~L~~L~Ls~n~l~ 409 (552)
+|+.|+|++|.|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=57.52 E-value=10 Score=21.71 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=5.6
Q ss_pred CccEEEccCCCCC
Q 008824 397 LLEVLELAGNDIT 409 (552)
Q Consensus 397 ~L~~L~Ls~n~l~ 409 (552)
+|+.|+|++|.|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 93
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=53.54 E-value=12 Score=42.55 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHHh
Q 008824 491 NIISEEGIDEVKEIFK 506 (552)
Q Consensus 491 N~i~~~g~~~l~~~l~ 506 (552)
..++..|+..|.+.+.
T Consensus 618 ~~~t~~~l~~ll~vl~ 633 (784)
T PF04931_consen 618 PHLTESGLQLLLDVLD 633 (784)
T ss_pred hhcCHHHHHHHHHHhc
Confidence 3588999999999988
No 94
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=53.06 E-value=0.44 Score=44.25 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=26.2
Q ss_pred CccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 008824 284 KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGV 353 (552)
Q Consensus 284 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 353 (552)
.|..|+++.|.+.- ++.-.++...+..+++..|..+. +|...+..++++++++-.|.|+.
T Consensus 66 ~~~rl~~sknq~~~-----~~~d~~q~~e~~~~~~~~n~~~~-----~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKF-----LPKDAKQQRETVNAASHKNNHSQ-----QPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHHHHhccHhhHhh-----ChhhHHHHHHHHHHHhhccchhh-----CCccccccCCcchhhhccCcchH
Confidence 44445555444322 33333333334444444444332 33444445555555555555443
No 95
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=47.25 E-value=0.35 Score=44.87 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=53.7
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008824 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
...+.||++.|++-..+-. | ...+.|..|+++.|+|.-. +..+.. ...+.++++++|.... .|..
T Consensus 42 kr~tvld~~s~r~vn~~~n-~----s~~t~~~rl~~sknq~~~~-~~d~~q----~~e~~~~~~~~n~~~~-----~p~s 106 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKN-F----SILTRLVRLDLSKNQIKFL-PKDAKQ----QRETVNAASHKNNHSQ-----QPKS 106 (326)
T ss_pred ceeeeehhhhhHHHhhccc-h----HHHHHHHHHhccHhhHhhC-hhhHHH----HHHHHHHHhhccchhh-----CCcc
Confidence 5788888888876543321 2 2225677788887765321 111211 2356677777777665 6777
Q ss_pred hhcCCCccEEEeeCCCCChH
Q 008824 307 VKHSPLLEDFRCSSTRIGSE 326 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~ 326 (552)
.+..++++.+++-.|.+...
T Consensus 107 ~~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred ccccCCcchhhhccCcchHH
Confidence 78888888888888886553
No 96
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=42.57 E-value=3.2 Score=34.81 Aligned_cols=106 Identities=22% Similarity=0.358 Sum_probs=45.1
Q ss_pred HccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHH
Q 008824 363 LSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAI 442 (552)
Q Consensus 363 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~ 442 (552)
+..+++|+.+.+.. .+.. +.......+.+|+.+.+..+ +...+. .++..+++|+.+.+..+ +..-+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~-----I~~~~F~~~~~l~~i~~~~~-~~~i~~----~~F~~~~~l~~i~~~~~-~~~i~~- 74 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKK-----IGENAFSNCTSLKSINFPNN-LTSIGD----NAFSNCKSLESITFPNN-LKSIGD- 74 (129)
T ss_dssp TTT-TT--EEEETS-T--E-----E-TTTTTT-TT-SEEEESST-TSCE-T----TTTTT-TT-EEEEETST-T-EE-T-
T ss_pred HhCCCCCCEEEECC-CeeE-----eChhhccccccccccccccc-ccccce----eeeeccccccccccccc-cccccc-
Confidence 34455666666653 2222 11111123456777777664 433222 12444567888888653 222111
Q ss_pred HHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008824 443 QISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 443 ~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
.++. .+++|+.+++..+ +...+... +..+ .|+.+.+..+
T Consensus 75 ---~~F~-~~~~l~~i~~~~~-~~~i~~~~----f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 75 ---NAFS-NCTNLKNIDIPSN-ITEIGSSS----FSNC-NLKEINIPSN 113 (129)
T ss_dssp ---TTTT-T-TTECEEEETTT--BEEHTTT----TTT--T--EEE-TTB
T ss_pred ---cccc-ccccccccccCcc-ccEEchhh----hcCC-CceEEEECCC
Confidence 1222 5789999999765 54333222 3334 7888888754
No 97
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=42.39 E-value=24 Score=33.06 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHh
Q 008824 493 ISEEGIDEVKEIFK 506 (552)
Q Consensus 493 i~~~g~~~l~~~l~ 506 (552)
|+..-+..+.+.+.
T Consensus 44 Ig~k~AekI~e~l~ 57 (232)
T PRK12766 44 IGNALAARIKADVG 57 (232)
T ss_pred CCHHHHHHHHHHhc
Confidence 45555666665554
No 98
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.55 E-value=16 Score=40.56 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=4.0
Q ss_pred CCccEEEccCC
Q 008824 453 DQLKVVDMSSN 463 (552)
Q Consensus 453 ~~L~~L~Ls~n 463 (552)
+.|-.=-+..|
T Consensus 1300 P~Ldqc~VtFN 1310 (1516)
T KOG1832|consen 1300 PSLDQCAVTFN 1310 (1516)
T ss_pred ccccceEEEec
Confidence 33333333333
No 99
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=32.73 E-value=28 Score=20.38 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=7.9
Q ss_pred CcCEEEccCCCCC
Q 008824 425 HLTKLNLAENELK 437 (552)
Q Consensus 425 ~L~~L~Ls~n~l~ 437 (552)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4666666666554
No 100
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=29.17 E-value=72 Score=24.82 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcccch--hhhhhcc-CCCHHHHHHHHHHHHHHHhhhhhh
Q 008824 25 RQMLVERMRNNLTTKS--IFTQRYG-VLTQEEAEENAKKIEDVAFSSANE 71 (552)
Q Consensus 25 r~~~~~r~~~~ls~~~--~~~~~~~-~~~~~ea~~~~~~~~~~~~~~~~~ 71 (552)
+.+|-+|+ .++|... -.|+.|| .+++++|+.++..+.+..+...+.
T Consensus 5 qqiVn~Kl-n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~ 53 (85)
T PF11116_consen 5 QQIVNQKL-NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNE 53 (85)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCH
Confidence 45677888 8999865 3678888 799999999999988877766554
No 101
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=27.84 E-value=40 Score=28.95 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=7.4
Q ss_pred ccccccccccCCCCC
Q 008824 509 PDMLESLEENDPEGG 523 (552)
Q Consensus 509 ~~~l~~l~~~~~~~e 523 (552)
...|..+.....+++
T Consensus 104 k~rLk~LG~eVSddE 118 (136)
T PF04871_consen 104 KERLKELGEEVSDDE 118 (136)
T ss_pred HHHHHHcCCCccCCc
Confidence 345555555554444
No 102
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.73 E-value=1.5e+02 Score=22.24 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=32.8
Q ss_pred cCCChhhHHHHHHHHHhhcccchhhhhhccCCCHHHHHHHHHHHHHH
Q 008824 18 WPPSQNTRQMLVERMRNNLTTKSIFTQRYGVLTQEEAEENAKKIEDV 64 (552)
Q Consensus 18 w~~~~~~r~~~~~r~~~~ls~~~~~~~~~~~~~~~ea~~~~~~~~~~ 64 (552)
|.....+-..||.||+..-.....+..-||.+++++|.++.+.+.+.
T Consensus 17 ~K~~~eSFSdvI~rli~~~~~~~~l~~~~g~l~deea~~~~~~i~e~ 63 (71)
T PF02697_consen 17 LKREDESFSDVIERLIEKEKKRRDLMDYFGILSDEEADEMEKDIKEE 63 (71)
T ss_pred HhcCCCCHHHHHHHHHhcccchhHHHHHhccCChhhHHHHHHHHHHH
Confidence 44344455678999977333344667778999999998887777654
No 103
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=25.94 E-value=36 Score=26.64 Aligned_cols=10 Identities=20% Similarity=0.733 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 008824 497 GIDEVKEIFK 506 (552)
Q Consensus 497 g~~~l~~~l~ 506 (552)
|+.++.+...
T Consensus 34 Gvaqm~e~vs 43 (96)
T PF15387_consen 34 GVAQMRELVS 43 (96)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 104
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=23.80 E-value=33 Score=39.02 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHh
Q 008824 464 FIRRAGARQLAQVVI 478 (552)
Q Consensus 464 ~i~~~g~~~l~~~l~ 478 (552)
.++..++..|.++|.
T Consensus 619 ~~t~~~l~~ll~vl~ 633 (784)
T PF04931_consen 619 HLTESGLQLLLDVLD 633 (784)
T ss_pred hcCHHHHHHHHHHhc
Confidence 467777777766654
No 105
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=22.25 E-value=4.7e+02 Score=21.86 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=35.7
Q ss_pred hcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 008824 421 AAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNI 488 (552)
Q Consensus 421 ~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L 488 (552)
..|++++.+.+.+...... .+. ....+..+.+.--.++...+..+.+.+...++++...+
T Consensus 65 eqWk~~k~~~i~~~~~~~~-------~l~-~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 65 EQWKNAKEFKIGGFVIDSF-------PLE-NFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred HHhceeheeEecccccccH-------HHH-hCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 4456777777766544210 122 44556666664445666666677777766677777776
No 106
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=53 Score=33.07 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHhcCccccccccccCCCCCCCCccccCCCCCchh
Q 008824 504 IFKNSPDMLESLEENDPEGGDDDEESGEGEGNEDE 538 (552)
Q Consensus 504 ~l~~~~~~l~~l~~~~~~~e~~~e~~~~~~~~e~~ 538 (552)
..+.+.......+..++..|+|++++++||++|..
T Consensus 254 s~~r~~~~n~sv~~~ss~~edD~Dddd~dDdeeN~ 288 (514)
T KOG3130|consen 254 SGQRNSQLNCSVNGSSSYHEDDDDDDDDDDDEENI 288 (514)
T ss_pred hhhhhhcccccccCCCCccccccccccccchhhcc
No 107
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=20.61 E-value=59 Score=32.43 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=8.1
Q ss_pred CCchhHHhhhccc
Q 008824 534 GNEDELESKMKNL 546 (552)
Q Consensus 534 ~~e~~~e~~~~~~ 546 (552)
+||+..|..|..+
T Consensus 304 ddEE~~e~~map~ 316 (542)
T KOG0699|consen 304 DDEEMVEGSMAPL 316 (542)
T ss_pred chhhhhhhccccc
Confidence 5556666667665
Done!