Query 008827
Match_columns 552
No_of_seqs 216 out of 2575
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 17:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 9.9E-48 2.1E-52 427.6 51.7 527 3-549 67-726 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.7E-45 3.7E-50 409.8 52.1 516 10-547 163-765 (2102)
3 KOG0166 Karyopherin (importin) 100.0 4E-41 8.6E-46 329.1 32.4 370 123-550 68-440 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 4.1E-40 8.9E-45 297.8 21.8 373 121-550 71-447 (526)
5 KOG0166 Karyopherin (importin) 100.0 1.7E-33 3.6E-38 275.7 31.4 324 207-549 68-396 (514)
6 KOG4224 Armadillo repeat prote 100.0 2E-33 4.3E-38 256.7 23.3 402 34-451 83-493 (550)
7 COG5064 SRP1 Karyopherin (impo 100.0 1.8E-33 3.9E-38 254.8 21.8 327 206-550 72-402 (526)
8 KOG4224 Armadillo repeat prote 100.0 4.9E-31 1.1E-35 241.1 26.3 445 33-500 44-493 (550)
9 KOG1293 Proteins containing ar 100.0 1.3E-27 2.9E-32 235.0 34.2 521 3-526 104-652 (678)
10 PF05804 KAP: Kinesin-associat 99.9 3.9E-21 8.6E-26 199.7 42.1 502 11-550 139-653 (708)
11 PF05804 KAP: Kinesin-associat 99.9 2.1E-20 4.6E-25 194.4 37.0 394 5-461 260-659 (708)
12 KOG4500 Rho/Rac GTPase guanine 99.8 4.1E-16 8.9E-21 146.8 28.7 448 38-500 44-519 (604)
13 KOG2023 Nuclear transport rece 99.8 3.2E-17 6.8E-22 161.7 19.5 439 77-551 10-511 (885)
14 KOG1048 Neural adherens juncti 99.7 1.1E-15 2.3E-20 155.6 28.1 399 34-450 231-683 (717)
15 KOG1048 Neural adherens juncti 99.7 3.6E-16 7.8E-21 159.1 24.1 363 121-499 233-683 (717)
16 KOG2023 Nuclear transport rece 99.7 1.1E-15 2.5E-20 150.9 26.7 480 35-545 127-774 (885)
17 KOG4199 Uncharacterized conser 99.7 1.9E-15 4E-20 138.2 25.7 304 179-500 123-444 (461)
18 PF01602 Adaptin_N: Adaptin N 99.7 2.7E-14 5.8E-19 151.2 36.5 462 7-547 19-484 (526)
19 KOG2171 Karyopherin (importin) 99.7 6.8E-14 1.5E-18 147.6 38.0 423 46-500 90-549 (1075)
20 KOG1293 Proteins containing ar 99.7 2E-14 4.4E-19 142.7 31.2 483 2-547 17-534 (678)
21 KOG2171 Karyopherin (importin) 99.7 1E-13 2.2E-18 146.4 37.7 469 39-550 7-508 (1075)
22 PF10508 Proteasom_PSMB: Prote 99.7 2.9E-13 6.3E-18 139.9 38.8 394 126-536 43-452 (503)
23 KOG4199 Uncharacterized conser 99.7 2.1E-14 4.6E-19 131.3 26.4 313 5-363 118-444 (461)
24 PRK09687 putative lyase; Provi 99.7 5.9E-15 1.3E-19 140.0 23.8 255 205-543 23-279 (280)
25 PF01602 Adaptin_N: Adaptin N 99.7 4.7E-14 1E-18 149.3 32.9 466 4-545 52-523 (526)
26 PF10508 Proteasom_PSMB: Prote 99.7 1.2E-13 2.5E-18 142.9 34.5 404 39-496 41-461 (503)
27 COG5369 Uncharacterized conser 99.7 8.5E-16 1.8E-20 148.3 17.2 275 263-545 403-740 (743)
28 KOG2122 Beta-catenin-binding p 99.7 1.6E-14 3.4E-19 153.2 24.8 377 128-547 201-602 (2195)
29 PRK09687 putative lyase; Provi 99.6 3.6E-14 7.7E-19 134.7 22.9 257 120-448 22-279 (280)
30 PRK13800 putative oxidoreducta 99.6 1.8E-13 3.8E-18 151.7 29.5 276 163-543 620-896 (897)
31 PRK13800 putative oxidoreducta 99.6 2.1E-13 4.6E-18 151.0 30.0 275 121-497 621-896 (897)
32 KOG2122 Beta-catenin-binding p 99.6 1.3E-13 2.9E-18 146.4 26.2 369 51-453 209-603 (2195)
33 KOG1241 Karyopherin (importin) 99.6 9.6E-13 2.1E-17 132.6 29.9 498 4-529 100-692 (859)
34 KOG4500 Rho/Rac GTPase guanine 99.6 1.2E-12 2.5E-17 123.8 27.8 438 89-545 55-518 (604)
35 PTZ00429 beta-adaptin; Provisi 99.6 6.1E-11 1.3E-15 125.9 42.5 470 5-546 43-546 (746)
36 KOG0168 Putative ubiquitin fus 99.6 1.4E-12 3.1E-17 132.6 27.2 389 122-529 168-655 (1051)
37 PF04826 Arm_2: Armadillo-like 99.5 5.9E-13 1.3E-17 123.4 19.3 229 202-442 9-253 (254)
38 COG5215 KAP95 Karyopherin (imp 99.5 7.3E-11 1.6E-15 115.5 33.6 500 3-529 103-692 (858)
39 PF04826 Arm_2: Armadillo-like 99.5 4E-12 8.6E-17 117.9 21.8 231 288-537 8-253 (254)
40 KOG1241 Karyopherin (importin) 99.5 7.8E-11 1.7E-15 119.1 31.6 431 79-547 4-478 (859)
41 PTZ00429 beta-adaptin; Provisi 99.4 4.1E-09 8.9E-14 112.2 42.0 327 36-407 105-434 (746)
42 cd00020 ARM Armadillo/beta-cat 99.4 3E-12 6.5E-17 106.5 12.7 118 244-362 2-119 (120)
43 cd00020 ARM Armadillo/beta-cat 99.4 1E-11 2.3E-16 103.2 14.1 117 288-405 3-119 (120)
44 cd00256 VATPase_H VATPase_H, r 99.3 3.6E-09 7.7E-14 104.7 26.2 324 164-499 53-424 (429)
45 KOG1222 Kinesin associated pro 99.3 1.2E-08 2.5E-13 98.4 28.0 393 50-516 277-675 (791)
46 KOG1222 Kinesin associated pro 99.2 9.2E-09 2E-13 99.1 26.0 387 8-415 277-672 (791)
47 cd00256 VATPase_H VATPase_H, r 99.2 3.8E-08 8.2E-13 97.5 27.3 322 77-405 53-424 (429)
48 KOG0213 Splicing factor 3b, su 99.2 1.3E-07 2.8E-12 95.8 30.9 446 33-545 633-1106(1172)
49 KOG0168 Putative ubiquitin fus 99.1 5E-09 1.1E-13 107.4 18.8 256 251-527 169-436 (1051)
50 COG5215 KAP95 Karyopherin (imp 99.1 6.9E-07 1.5E-11 88.2 31.9 499 5-547 52-628 (858)
51 KOG0946 ER-Golgi vesicle-tethe 99.1 2.9E-06 6.4E-11 87.0 36.9 337 35-375 21-410 (970)
52 KOG1059 Vesicle coat complex A 99.1 6.4E-07 1.4E-11 90.8 31.8 412 80-547 147-578 (877)
53 KOG1824 TATA-binding protein-i 99.0 1.2E-06 2.7E-11 91.2 33.2 465 5-501 489-1037(1233)
54 KOG1060 Vesicle coat complex A 99.0 4.2E-06 9.1E-11 85.9 33.5 242 255-539 293-564 (968)
55 KOG1062 Vesicle coat complex A 98.9 2.3E-06 5E-11 88.1 30.2 370 90-500 121-544 (866)
56 KOG2160 Armadillo/beta-catenin 98.9 6.6E-08 1.4E-12 91.2 17.7 188 132-323 94-284 (342)
57 KOG1062 Vesicle coat complex A 98.9 2.7E-06 5.8E-11 87.6 30.2 401 41-492 112-573 (866)
58 KOG1061 Vesicle coat complex A 98.9 4.1E-07 8.9E-12 93.5 24.4 406 39-499 52-488 (734)
59 COG5240 SEC21 Vesicle coat com 98.9 4.3E-06 9.3E-11 82.8 30.1 479 6-547 33-556 (898)
60 KOG2160 Armadillo/beta-catenin 98.9 1.2E-07 2.7E-12 89.4 18.3 189 214-405 90-281 (342)
61 KOG0211 Protein phosphatase 2A 98.9 1.2E-06 2.7E-11 92.6 27.4 394 124-545 240-663 (759)
62 KOG1242 Protein containing ada 98.9 3.5E-06 7.6E-11 84.9 28.8 368 90-500 70-444 (569)
63 KOG1824 TATA-binding protein-i 98.9 2.6E-06 5.6E-11 89.0 28.2 488 7-546 345-886 (1233)
64 COG5181 HSH155 U2 snRNP splice 98.9 2.7E-06 5.9E-11 84.8 26.9 335 122-500 605-946 (975)
65 COG5181 HSH155 U2 snRNP splice 98.8 1.6E-06 3.6E-11 86.3 24.6 377 122-546 522-912 (975)
66 KOG0211 Protein phosphatase 2A 98.8 3.1E-06 6.7E-11 89.7 28.0 378 89-499 250-663 (759)
67 KOG0946 ER-Golgi vesicle-tethe 98.8 2.4E-05 5.3E-10 80.5 32.8 334 121-462 22-410 (970)
68 TIGR02270 conserved hypothetic 98.8 2.1E-06 4.6E-11 85.7 25.2 244 205-547 54-297 (410)
69 KOG2759 Vacuolar H+-ATPase V1 98.8 3.9E-06 8.5E-11 80.5 25.3 308 166-499 116-437 (442)
70 KOG0212 Uncharacterized conser 98.8 3.8E-06 8.2E-11 83.1 25.9 354 120-499 83-443 (675)
71 KOG0213 Splicing factor 3b, su 98.8 1.6E-05 3.4E-10 81.2 29.3 405 4-454 646-1068(1172)
72 COG5369 Uncharacterized conser 98.8 4.6E-07 1E-11 88.8 17.6 267 225-499 407-740 (743)
73 KOG1789 Endocytosis protein RM 98.7 7.3E-06 1.6E-10 86.3 26.0 330 7-346 1738-2142(2235)
74 PF03224 V-ATPase_H_N: V-ATPas 98.7 6.5E-07 1.4E-11 87.5 17.5 225 123-352 57-303 (312)
75 KOG3678 SARM protein (with ste 98.7 2.1E-06 4.4E-11 83.0 19.6 275 199-499 174-451 (832)
76 PF03224 V-ATPase_H_N: V-ATPas 98.7 1.7E-06 3.7E-11 84.5 19.3 224 251-489 57-303 (312)
77 KOG3678 SARM protein (with ste 98.6 3.4E-06 7.3E-11 81.5 19.1 274 243-544 174-450 (832)
78 KOG1242 Protein containing ada 98.6 5.3E-05 1.1E-09 76.6 27.5 442 35-536 95-554 (569)
79 KOG2759 Vacuolar H+-ATPase V1 98.6 6.5E-05 1.4E-09 72.3 25.0 321 78-405 66-437 (442)
80 TIGR02270 conserved hypothetic 98.6 1E-05 2.2E-10 80.9 20.8 211 250-545 55-266 (410)
81 KOG4535 HEAT and armadillo rep 98.5 0.00018 3.8E-09 70.3 27.0 473 7-501 9-604 (728)
82 KOG1061 Vesicle coat complex A 98.5 1.6E-05 3.6E-10 82.0 21.2 410 35-500 12-453 (734)
83 KOG1077 Vesicle coat complex A 98.5 0.00064 1.4E-08 69.5 31.9 259 40-323 115-435 (938)
84 KOG0212 Uncharacterized conser 98.5 5.1E-05 1.1E-09 75.4 23.2 320 161-500 81-406 (675)
85 KOG4413 26S proteasome regulat 98.5 0.00035 7.5E-09 65.1 26.6 361 121-496 82-480 (524)
86 KOG1059 Vesicle coat complex A 98.5 0.00038 8.2E-09 71.4 29.1 254 123-408 146-403 (877)
87 PF05536 Neurochondrin: Neuroc 98.4 0.0018 3.9E-08 67.8 34.3 233 78-322 6-262 (543)
88 KOG1060 Vesicle coat complex A 98.4 0.00039 8.4E-09 72.0 28.0 283 80-407 38-351 (968)
89 KOG2259 Uncharacterized conser 98.4 2.1E-05 4.6E-10 79.4 18.6 294 123-452 200-512 (823)
90 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00025 5.4E-09 70.2 25.5 323 209-552 29-370 (371)
91 COG1413 FOG: HEAT repeat [Ener 98.4 0.00015 3.2E-09 72.0 24.2 246 36-362 43-303 (335)
92 KOG0915 Uncharacterized conser 98.4 0.00043 9.3E-09 76.6 28.8 289 206-514 999-1317(1702)
93 COG1413 FOG: HEAT repeat [Ener 98.4 0.00029 6.3E-09 69.9 25.9 275 121-495 43-330 (335)
94 KOG1078 Vesicle coat complex C 98.4 0.0016 3.4E-08 67.7 30.4 276 6-324 32-314 (865)
95 KOG2973 Uncharacterized conser 98.3 0.00023 5E-09 65.8 21.7 275 251-546 5-315 (353)
96 KOG1517 Guanine nucleotide bin 98.3 2.1E-05 4.6E-10 83.2 16.8 225 138-364 487-733 (1387)
97 KOG1517 Guanine nucleotide bin 98.3 3.1E-05 6.8E-10 82.0 17.4 229 181-412 488-738 (1387)
98 KOG4413 26S proteasome regulat 98.3 0.0029 6.3E-08 59.1 28.1 337 14-363 63-439 (524)
99 KOG1077 Vesicle coat complex A 98.3 0.005 1.1E-07 63.3 31.8 293 82-405 116-432 (938)
100 KOG1943 Beta-tubulin folding c 98.2 0.0013 2.9E-08 70.6 27.4 345 122-500 342-705 (1133)
101 KOG1943 Beta-tubulin folding c 98.2 0.014 3.1E-07 63.1 34.3 462 36-546 341-837 (1133)
102 KOG2973 Uncharacterized conser 98.2 0.00068 1.5E-08 62.8 20.7 270 167-451 6-315 (353)
103 KOG1240 Protein kinase contain 98.1 0.00024 5.2E-09 76.7 20.2 281 49-363 436-725 (1431)
104 KOG4646 Uncharacterized conser 98.1 6.7E-05 1.5E-09 60.4 11.8 122 291-415 15-137 (173)
105 PF12348 CLASP_N: CLASP N term 98.1 3.8E-05 8.2E-10 71.6 12.3 187 219-413 19-213 (228)
106 KOG1240 Protein kinase contain 98.1 0.00023 5E-09 76.9 18.6 287 133-451 435-725 (1431)
107 PF13646 HEAT_2: HEAT repeats; 98.0 2.6E-05 5.6E-10 60.5 8.3 86 251-359 1-88 (88)
108 KOG4535 HEAT and armadillo rep 98.0 0.0031 6.7E-08 61.9 23.6 472 51-542 11-599 (728)
109 PF00514 Arm: Armadillo/beta-c 98.0 1.2E-05 2.6E-10 52.0 5.0 39 324-362 2-40 (41)
110 KOG2259 Uncharacterized conser 98.0 0.00031 6.6E-09 71.3 17.0 255 37-320 199-474 (823)
111 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0017 3.7E-08 64.4 22.3 238 162-408 23-271 (371)
112 PF12460 MMS19_C: RNAPII trans 98.0 0.013 2.8E-07 59.8 29.3 349 38-410 1-398 (415)
113 PF00514 Arm: Armadillo/beta-c 98.0 1.6E-05 3.4E-10 51.4 5.2 41 238-278 1-41 (41)
114 PF13513 HEAT_EZ: HEAT-like re 98.0 2.8E-05 6E-10 54.1 6.7 55 436-498 1-55 (55)
115 KOG1020 Sister chromatid cohes 98.0 0.054 1.2E-06 60.8 36.1 136 3-152 825-962 (1692)
116 KOG1789 Endocytosis protein RM 98.0 0.0014 3.1E-08 69.9 21.5 289 94-389 1743-2142(2235)
117 KOG0915 Uncharacterized conser 98.0 0.011 2.3E-07 66.1 28.8 396 35-453 997-1429(1702)
118 PF05536 Neurochondrin: Neuroc 97.9 0.002 4.4E-08 67.4 22.1 238 206-450 6-260 (543)
119 KOG1058 Vesicle coat complex C 97.9 0.0036 7.7E-08 64.8 22.7 319 120-500 133-463 (948)
120 KOG4646 Uncharacterized conser 97.9 0.00016 3.4E-09 58.3 10.4 136 206-345 17-152 (173)
121 PF13646 HEAT_2: HEAT repeats; 97.9 4E-05 8.6E-10 59.4 6.5 87 336-447 1-88 (88)
122 KOG1058 Vesicle coat complex C 97.9 0.0044 9.6E-08 64.1 22.4 348 129-546 107-463 (948)
123 PF12348 CLASP_N: CLASP N term 97.8 0.00052 1.1E-08 63.9 14.5 180 302-499 17-205 (228)
124 KOG0567 HEAT repeat-containing 97.8 0.0023 5E-08 58.1 17.0 194 290-544 65-278 (289)
125 KOG2734 Uncharacterized conser 97.7 0.013 2.8E-07 57.2 21.0 220 120-342 124-369 (536)
126 COG5240 SEC21 Vesicle coat com 97.7 0.015 3.3E-07 58.5 21.8 285 39-361 267-553 (898)
127 PF13513 HEAT_EZ: HEAT-like re 97.7 0.00012 2.6E-09 50.9 5.4 55 306-361 1-55 (55)
128 PF11841 DUF3361: Domain of un 97.6 0.0037 8.1E-08 53.0 14.0 132 243-376 5-144 (160)
129 PF12460 MMS19_C: RNAPII trans 97.5 0.074 1.6E-06 54.3 26.3 187 292-500 189-394 (415)
130 KOG0567 HEAT repeat-containing 97.5 0.013 2.8E-07 53.5 17.5 196 250-500 68-280 (289)
131 COG5096 Vesicle coat complex, 97.5 0.0063 1.4E-07 64.6 17.4 167 343-546 28-195 (757)
132 PF12717 Cnd1: non-SMC mitotic 97.4 0.012 2.5E-07 52.4 16.5 93 220-322 1-93 (178)
133 PF10165 Ric8: Guanine nucleot 97.4 0.022 4.8E-07 58.3 20.4 239 259-500 42-337 (446)
134 KOG2032 Uncharacterized conser 97.4 0.014 3E-07 57.8 17.5 268 251-546 260-531 (533)
135 PF12717 Cnd1: non-SMC mitotic 97.3 0.02 4.3E-07 50.8 16.6 93 305-407 1-93 (178)
136 PF10165 Ric8: Guanine nucleot 97.3 0.1 2.2E-06 53.6 23.3 267 270-546 2-337 (446)
137 PF05918 API5: Apoptosis inhib 97.3 0.1 2.2E-06 53.9 23.1 305 81-414 27-353 (556)
138 KOG2734 Uncharacterized conser 97.3 0.22 4.7E-06 49.0 26.2 227 227-462 104-359 (536)
139 smart00185 ARM Armadillo/beta- 97.3 0.00075 1.6E-08 43.4 5.3 38 325-362 3-40 (41)
140 PF05004 IFRD: Interferon-rela 97.3 0.064 1.4E-06 52.0 20.5 189 296-499 47-256 (309)
141 COG5231 VMA13 Vacuolar H+-ATPa 97.3 0.041 8.9E-07 51.5 17.8 255 221-499 163-427 (432)
142 KOG2062 26S proteasome regulat 97.2 0.06 1.3E-06 56.1 20.3 162 335-534 520-682 (929)
143 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0019 4.1E-08 50.4 7.7 90 224-319 3-94 (97)
144 smart00185 ARM Armadillo/beta- 97.2 0.0011 2.3E-08 42.7 5.1 39 240-278 3-41 (41)
145 PF11841 DUF3361: Domain of un 97.2 0.0088 1.9E-07 50.7 11.7 121 288-410 7-135 (160)
146 COG5231 VMA13 Vacuolar H+-ATPa 97.1 0.051 1.1E-06 50.9 17.3 223 179-405 165-427 (432)
147 KOG1991 Nuclear transport rece 97.1 0.57 1.2E-05 50.8 39.9 281 205-500 410-711 (1010)
148 PF09759 Atx10homo_assoc: Spin 97.1 0.0032 6.9E-08 49.2 7.9 68 180-247 3-70 (102)
149 COG5096 Vesicle coat complex, 97.1 0.58 1.3E-05 50.2 30.7 168 130-322 28-196 (757)
150 KOG1248 Uncharacterized conser 97.0 0.8 1.7E-05 50.8 29.1 223 303-544 665-896 (1176)
151 KOG1991 Nuclear transport rece 97.0 0.73 1.6E-05 50.1 32.9 436 7-462 337-811 (1010)
152 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0048 1E-07 48.2 7.6 92 93-191 3-95 (97)
153 KOG4151 Myosin assembly protei 96.8 0.1 2.2E-06 55.1 18.1 241 288-547 500-742 (748)
154 PF05004 IFRD: Interferon-rela 96.6 0.49 1.1E-05 46.0 20.8 195 337-548 46-259 (309)
155 PF09759 Atx10homo_assoc: Spin 96.6 0.011 2.5E-07 46.1 7.5 65 350-415 2-68 (102)
156 KOG1967 DNA repair/transcripti 96.6 0.048 1E-06 58.2 14.0 190 165-361 816-1022(1030)
157 PRK14707 hypothetical protein; 96.6 2.5 5.4E-05 50.0 40.0 461 12-497 182-652 (2710)
158 KOG1078 Vesicle coat complex C 96.5 1.5 3.2E-05 46.6 27.6 54 434-499 478-531 (865)
159 KOG1243 Protein kinase [Genera 96.5 0.041 9E-07 57.1 12.4 233 281-549 283-518 (690)
160 KOG2025 Chromosome condensatio 96.4 0.17 3.6E-06 52.7 16.2 103 291-401 84-188 (892)
161 KOG4151 Myosin assembly protei 96.4 0.057 1.2E-06 56.9 13.0 217 119-344 502-722 (748)
162 KOG0413 Uncharacterized conser 96.4 1.9 4.2E-05 46.8 23.9 131 391-548 945-1075(1529)
163 PF11698 V-ATPase_H_C: V-ATPas 96.4 0.012 2.6E-07 47.3 6.3 71 422-499 44-114 (119)
164 PF05918 API5: Apoptosis inhib 96.3 0.13 2.8E-06 53.2 15.1 140 251-404 61-205 (556)
165 KOG2274 Predicted importin 9 [ 96.3 1.7 3.6E-05 47.0 23.1 202 220-432 504-719 (1005)
166 KOG1967 DNA repair/transcripti 96.3 0.16 3.4E-06 54.5 15.7 249 226-496 752-1020(1030)
167 KOG2274 Predicted importin 9 [ 96.3 0.47 1E-05 50.9 18.9 271 129-411 499-785 (1005)
168 KOG2062 26S proteasome regulat 96.3 0.27 5.9E-06 51.4 16.8 128 379-544 521-651 (929)
169 PF02985 HEAT: HEAT repeat; I 96.2 0.0075 1.6E-07 35.9 3.5 30 250-279 1-30 (31)
170 PF02985 HEAT: HEAT repeat; I 96.2 0.0074 1.6E-07 36.0 3.4 29 293-321 1-29 (31)
171 PF08569 Mo25: Mo25-like; Int 96.2 1.5 3.2E-05 43.0 21.1 204 243-453 70-285 (335)
172 PF12719 Cnd3: Nuclear condens 96.1 0.12 2.7E-06 50.0 13.4 162 84-259 34-207 (298)
173 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.017 3.6E-07 46.5 5.9 72 291-362 42-114 (119)
174 KOG1020 Sister chromatid cohes 96.1 3.7 8.1E-05 47.0 33.8 110 76-197 815-926 (1692)
175 PF08569 Mo25: Mo25-like; Int 96.1 1.3 2.7E-05 43.5 20.0 203 199-407 70-284 (335)
176 KOG0414 Chromosome condensatio 96.1 0.053 1.1E-06 59.4 11.2 161 163-346 918-1083(1251)
177 KOG4653 Uncharacterized conser 96.0 0.48 1.1E-05 50.6 17.6 229 251-498 729-962 (982)
178 PRK14707 hypothetical protein; 96.0 4.9 0.00011 47.8 41.0 461 13-500 97-571 (2710)
179 KOG0414 Chromosome condensatio 95.9 0.061 1.3E-06 59.0 11.1 132 379-538 921-1056(1251)
180 COG5116 RPN2 26S proteasome re 95.9 0.14 3E-06 51.9 12.5 156 339-532 521-677 (926)
181 KOG3036 Protein involved in ce 95.9 1.4 3E-05 40.2 17.4 141 310-452 97-248 (293)
182 PF12719 Cnd3: Nuclear condens 95.9 0.86 1.9E-05 44.2 18.0 172 292-483 26-209 (298)
183 PF07814 WAPL: Wings apart-lik 95.8 1.5 3.2E-05 43.8 19.7 239 207-461 23-309 (361)
184 PF11701 UNC45-central: Myosin 95.7 0.081 1.8E-06 45.7 9.3 149 206-360 4-156 (157)
185 KOG4653 Uncharacterized conser 95.7 0.82 1.8E-05 48.9 17.6 214 221-447 741-960 (982)
186 KOG1248 Uncharacterized conser 95.4 6.1 0.00013 44.2 30.5 227 259-500 664-898 (1176)
187 KOG2999 Regulator of Rac1, req 95.2 2 4.4E-05 43.7 17.7 162 209-375 87-254 (713)
188 PF11701 UNC45-central: Myosin 95.2 0.22 4.9E-06 43.0 10.0 139 345-498 16-157 (157)
189 KOG2025 Chromosome condensatio 95.1 2.1 4.7E-05 44.9 18.1 105 161-273 82-188 (892)
190 KOG2956 CLIP-associating prote 95.0 4 8.6E-05 40.9 18.8 174 304-499 299-476 (516)
191 COG5116 RPN2 26S proteasome re 94.8 0.49 1.1E-05 48.1 12.3 130 297-453 521-652 (926)
192 KOG2032 Uncharacterized conser 94.5 5.7 0.00012 40.1 18.7 250 129-405 266-530 (533)
193 PF04078 Rcd1: Cell differenti 94.5 3.9 8.5E-05 38.0 16.4 147 311-460 69-226 (262)
194 PF13251 DUF4042: Domain of un 94.3 0.86 1.9E-05 40.2 11.5 112 381-500 44-174 (182)
195 PF08045 CDC14: Cell division 94.2 0.28 6E-06 45.6 8.7 100 6-105 103-207 (257)
196 COG5098 Chromosome condensatio 94.2 0.59 1.3E-05 48.7 11.6 143 250-410 893-1041(1128)
197 PF07814 WAPL: Wings apart-lik 94.2 3.4 7.4E-05 41.2 17.0 275 36-325 21-359 (361)
198 KOG1820 Microtubule-associated 94.1 3.1 6.7E-05 45.6 17.4 182 127-321 259-443 (815)
199 KOG2137 Protein kinase [Signal 94.1 2 4.3E-05 45.4 15.2 236 133-390 285-521 (700)
200 KOG2956 CLIP-associating prote 94.0 3.7 8E-05 41.1 16.0 170 91-278 302-477 (516)
201 PF10363 DUF2435: Protein of u 93.8 0.4 8.7E-06 37.0 7.5 72 336-410 5-76 (92)
202 PF08045 CDC14: Cell division 93.7 0.67 1.4E-05 43.1 10.0 97 265-362 107-206 (257)
203 PF04063 DUF383: Domain of unk 93.4 1 2.2E-05 40.2 10.5 128 388-527 6-157 (192)
204 PF08167 RIX1: rRNA processing 93.4 1.5 3.3E-05 38.2 11.5 116 36-154 25-147 (165)
205 KOG3036 Protein involved in ce 93.3 6.3 0.00014 36.1 20.8 139 267-407 97-248 (293)
206 PF04063 DUF383: Domain of unk 93.3 0.68 1.5E-05 41.3 9.3 125 259-387 5-157 (192)
207 COG5656 SXM1 Importin, protein 93.3 13 0.00029 39.6 24.5 277 205-500 408-711 (970)
208 PF12530 DUF3730: Protein of u 93.1 7.5 0.00016 36.1 17.2 197 129-348 9-217 (234)
209 KOG1243 Protein kinase [Genera 93.0 3.2 7E-05 43.7 14.6 190 202-407 327-516 (690)
210 PF01347 Vitellogenin_N: Lipop 92.8 4.6 0.0001 43.8 16.8 197 207-444 397-615 (618)
211 KOG1566 Conserved protein Mo25 92.7 9.6 0.00021 36.3 18.1 204 199-407 73-287 (342)
212 PF14668 RICTOR_V: Rapamycin-i 92.6 0.88 1.9E-05 33.3 7.3 66 439-517 4-70 (73)
213 PF04078 Rcd1: Cell differenti 92.4 9.3 0.0002 35.6 18.4 186 221-408 9-220 (262)
214 COG5098 Chromosome condensatio 92.2 0.77 1.7E-05 47.9 8.9 133 389-549 908-1040(1128)
215 PF11707 Npa1: Ribosome 60S bi 92.0 12 0.00026 36.9 17.0 160 379-544 58-235 (330)
216 PF01347 Vitellogenin_N: Lipop 91.7 11 0.00024 40.9 18.0 170 250-448 396-586 (618)
217 smart00638 LPD_N Lipoprotein N 91.4 19 0.00042 38.6 19.2 136 292-449 393-543 (574)
218 PF08506 Cse1: Cse1; InterPro 91.3 17 0.00037 36.4 17.5 95 216-316 264-370 (370)
219 KOG1820 Microtubule-associated 91.0 5.2 0.00011 44.0 14.2 176 220-405 266-442 (815)
220 KOG2933 Uncharacterized conser 90.9 1.3 2.7E-05 41.9 8.2 140 250-404 89-232 (334)
221 KOG2999 Regulator of Rac1, req 90.9 2.5 5.3E-05 43.1 10.6 156 251-410 85-246 (713)
222 PF08506 Cse1: Cse1; InterPro 90.8 19 0.00042 36.0 18.8 151 369-541 202-370 (370)
223 PF06025 DUF913: Domain of Unk 90.8 20 0.00042 36.1 17.2 101 288-390 101-209 (379)
224 PF13251 DUF4042: Domain of un 90.7 8.4 0.00018 34.0 12.8 143 265-408 2-176 (182)
225 PF06371 Drf_GBD: Diaphanous G 90.3 2.2 4.8E-05 38.0 9.3 80 197-277 99-186 (187)
226 PF10363 DUF2435: Protein of u 90.2 1.4 3E-05 34.1 6.6 70 294-365 5-74 (92)
227 KOG2137 Protein kinase [Signal 90.1 17 0.00037 38.7 16.3 142 374-536 386-527 (700)
228 KOG3665 ZYG-1-like serine/thre 90.0 33 0.00072 37.5 21.9 194 272-495 494-692 (699)
229 smart00638 LPD_N Lipoprotein N 89.9 19 0.00041 38.7 17.5 194 207-442 359-569 (574)
230 PF12830 Nipped-B_C: Sister ch 89.8 14 0.0003 32.9 14.9 144 336-500 10-167 (187)
231 KOG1949 Uncharacterized conser 89.4 9.9 0.00021 40.2 13.7 149 337-499 177-330 (1005)
232 PF13764 E3_UbLigase_R4: E3 ub 89.3 39 0.00085 37.4 22.4 238 289-546 114-406 (802)
233 COG5218 YCG1 Chromosome conden 89.3 4.4 9.6E-05 41.8 11.0 103 248-357 90-193 (885)
234 KOG1822 Uncharacterized conser 88.9 50 0.0011 39.5 19.9 110 294-407 878-989 (2067)
235 KOG1832 HIV-1 Vpr-binding prot 88.6 42 0.00091 36.8 20.1 141 305-462 622-782 (1516)
236 PF11864 DUF3384: Domain of un 88.5 34 0.00073 35.6 17.8 95 392-499 230-329 (464)
237 PF06371 Drf_GBD: Diaphanous G 88.2 3.4 7.4E-05 36.8 8.9 109 123-235 68-186 (187)
238 PF12054 DUF3535: Domain of un 87.6 12 0.00026 38.4 13.3 217 91-322 102-343 (441)
239 PF08167 RIX1: rRNA processing 87.6 8.1 0.00017 33.7 10.5 115 378-500 26-143 (165)
240 PF13764 E3_UbLigase_R4: E3 ub 87.6 51 0.0011 36.5 21.7 182 200-387 112-329 (802)
241 KOG2933 Uncharacterized conser 87.2 10 0.00022 36.0 11.3 108 378-500 89-199 (334)
242 KOG1949 Uncharacterized conser 86.9 14 0.00031 39.1 13.1 146 124-277 177-330 (1005)
243 PF12530 DUF3730: Protein of u 86.9 26 0.00057 32.5 20.1 203 251-485 2-217 (234)
244 PF14500 MMS19_N: Dos2-interac 86.8 29 0.00062 32.9 17.8 210 128-363 6-237 (262)
245 cd03568 VHS_STAM VHS domain fa 86.6 5 0.00011 34.0 8.4 95 303-406 15-110 (144)
246 PF14668 RICTOR_V: Rapamycin-i 86.6 2.1 4.5E-05 31.3 5.2 67 11-79 4-72 (73)
247 COG5656 SXM1 Importin, protein 86.4 52 0.0011 35.5 22.3 281 248-548 407-713 (970)
248 cd03567 VHS_GGA VHS domain fam 86.2 12 0.00025 31.5 10.3 94 387-499 15-115 (139)
249 KOG1832 HIV-1 Vpr-binding prot 86.1 59 0.0013 35.8 19.8 151 328-500 595-773 (1516)
250 PF11707 Npa1: Ribosome 60S bi 85.8 38 0.00082 33.4 21.7 155 294-451 58-237 (330)
251 PF14631 FancD2: Fanconi anaem 85.4 91 0.002 37.3 21.6 264 123-410 194-506 (1426)
252 KOG1525 Sister chromatid cohes 85.3 83 0.0018 36.8 24.9 147 333-499 258-404 (1266)
253 cd03567 VHS_GGA VHS domain fam 85.2 6.1 0.00013 33.2 8.1 94 303-405 16-115 (139)
254 PF12031 DUF3518: Domain of un 85.0 2.7 5.9E-05 38.3 6.2 89 391-486 138-231 (257)
255 PF06025 DUF913: Domain of Unk 84.5 20 0.00043 36.0 12.8 102 160-262 101-209 (379)
256 PF08324 PUL: PUL domain; Int 84.5 19 0.00041 34.2 12.4 158 38-198 65-237 (268)
257 cd03569 VHS_Hrs_Vps27p VHS dom 84.5 6.8 0.00015 33.1 8.2 72 334-405 41-113 (142)
258 PF13001 Ecm29: Proteasome sta 83.6 33 0.00072 36.0 14.6 214 131-361 247-486 (501)
259 cd03561 VHS VHS domain family; 83.4 8.6 0.00019 32.1 8.4 73 334-406 37-112 (133)
260 KOG1788 Uncharacterized conser 83.3 86 0.0019 35.4 22.4 286 37-344 467-784 (2799)
261 PF12074 DUF3554: Domain of un 83.2 21 0.00046 35.3 12.5 197 207-411 24-240 (339)
262 cd03568 VHS_STAM VHS domain fa 83.0 12 0.00026 31.7 9.1 94 387-499 14-109 (144)
263 KOG0413 Uncharacterized conser 82.9 2.8 6.1E-05 45.6 6.2 123 53-193 948-1074(1529)
264 PF13001 Ecm29: Proteasome sta 82.5 65 0.0014 33.8 16.3 181 251-451 239-443 (501)
265 PF08324 PUL: PUL domain; Int 82.4 28 0.0006 33.0 12.6 159 165-325 64-235 (268)
266 PF04869 Uso1_p115_head: Uso1 82.2 45 0.00098 32.4 13.8 156 292-449 34-229 (312)
267 PF01603 B56: Protein phosphat 81.4 66 0.0014 32.8 21.8 234 288-549 129-373 (409)
268 COG5218 YCG1 Chromosome conden 81.1 36 0.00078 35.5 12.8 106 333-447 90-195 (885)
269 COG5209 RCD1 Uncharacterized p 80.5 30 0.00065 31.3 10.7 106 310-417 118-228 (315)
270 PF11865 DUF3385: Domain of un 80.4 14 0.00029 32.1 8.7 145 206-362 11-156 (160)
271 KOG1992 Nuclear export recepto 80.0 98 0.0021 33.9 29.9 167 371-549 355-530 (960)
272 PF14500 MMS19_N: Dos2-interac 79.8 56 0.0012 30.9 14.9 213 175-407 11-238 (262)
273 PF12830 Nipped-B_C: Sister ch 79.4 45 0.00099 29.7 12.5 67 292-363 8-74 (187)
274 cd03561 VHS VHS domain family; 79.3 21 0.00045 29.8 9.3 71 422-499 38-111 (133)
275 KOG0392 SNF2 family DNA-depend 78.9 36 0.00078 38.9 12.9 152 291-451 76-237 (1549)
276 cd03572 ENTH_epsin_related ENT 78.5 17 0.00038 29.6 8.2 73 472-547 39-120 (122)
277 smart00288 VHS Domain present 78.1 14 0.00031 30.8 7.9 72 334-405 37-110 (133)
278 PF06685 DUF1186: Protein of u 78.1 60 0.0013 30.3 13.1 26 437-462 128-153 (249)
279 PF10521 DUF2454: Protein of u 75.8 40 0.00086 32.3 11.4 113 250-362 120-252 (282)
280 PF12031 DUF3518: Domain of un 74.9 6.7 0.00014 35.9 5.3 83 307-390 139-229 (257)
281 KOG2611 Neurochondrin/leucine- 74.5 1.1E+02 0.0023 31.4 14.8 134 337-483 14-164 (698)
282 PF11865 DUF3385: Domain of un 74.2 30 0.00066 29.9 9.1 143 250-404 11-155 (160)
283 KOG1566 Conserved protein Mo25 74.1 86 0.0019 30.2 19.7 204 243-452 73-287 (342)
284 cd03569 VHS_Hrs_Vps27p VHS dom 74.0 12 0.00026 31.7 6.4 71 121-191 41-113 (142)
285 PF06685 DUF1186: Protein of u 74.0 78 0.0017 29.6 12.5 82 161-247 70-153 (249)
286 PF14631 FancD2: Fanconi anaem 73.3 2.1E+02 0.0047 34.4 22.5 148 291-451 430-587 (1426)
287 PF00790 VHS: VHS domain; Int 69.6 12 0.00026 31.5 5.6 72 334-405 42-117 (140)
288 PF10521 DUF2454: Protein of u 69.6 1.1E+02 0.0023 29.4 13.1 70 292-361 119-201 (282)
289 KOG0301 Phospholipase A2-activ 69.3 92 0.002 33.2 12.4 64 87-151 555-618 (745)
290 KOG2213 Apoptosis inhibitor 5/ 69.3 1.3E+02 0.0027 30.0 16.3 123 263-391 38-165 (460)
291 PLN03076 ARF guanine nucleotid 69.2 2.9E+02 0.0062 34.1 19.6 264 221-500 1151-1489(1780)
292 cd08050 TAF6 TATA Binding Prot 68.4 48 0.001 32.8 10.2 110 249-361 210-338 (343)
293 smart00288 VHS Domain present 67.8 25 0.00054 29.3 7.0 70 121-190 37-109 (133)
294 KOG1848 Uncharacterized conser 66.4 2.7E+02 0.0058 32.8 18.1 82 262-345 942-1027(1610)
295 KOG3665 ZYG-1-like serine/thre 66.0 2.1E+02 0.0046 31.5 25.3 192 315-539 494-690 (699)
296 KOG2038 CAATT-binding transcri 66.0 1.9E+02 0.0042 31.5 14.0 103 378-500 305-409 (988)
297 KOG1788 Uncharacterized conser 65.1 1.7E+02 0.0036 33.3 13.7 236 184-430 663-959 (2799)
298 KOG0891 DNA-dependent protein 64.5 1.1E+02 0.0025 38.2 13.8 225 129-364 489-720 (2341)
299 KOG2611 Neurochondrin/leucine- 63.3 1.8E+02 0.004 29.8 14.2 133 124-259 14-162 (698)
300 PF00790 VHS: VHS domain; Int 62.7 49 0.0011 27.8 7.9 74 471-547 42-119 (140)
301 PF08713 DNA_alkylation: DNA a 62.4 1.2E+02 0.0026 27.4 12.3 142 251-418 53-196 (213)
302 PF08389 Xpo1: Exportin 1-like 62.3 92 0.002 26.0 10.2 127 264-401 3-148 (148)
303 KOG2149 Uncharacterized conser 61.0 79 0.0017 31.5 9.8 118 291-410 57-174 (393)
304 PF12231 Rif1_N: Rap1-interact 59.3 2E+02 0.0043 28.9 20.0 219 179-405 62-302 (372)
305 KOG4464 Signaling protein RIC- 58.8 2E+02 0.0044 28.8 17.1 239 261-500 109-402 (532)
306 cd03565 VHS_Tom1 VHS domain fa 58.6 99 0.0022 26.0 9.0 96 386-499 14-114 (141)
307 PF14225 MOR2-PAG1_C: Cell mor 58.0 1.7E+02 0.0037 27.7 15.0 150 223-390 78-241 (262)
308 PF12765 Cohesin_HEAT: HEAT re 57.0 11 0.00023 24.1 2.2 25 249-273 18-42 (42)
309 cd03565 VHS_Tom1 VHS domain fa 56.5 92 0.002 26.2 8.4 95 303-406 16-115 (141)
310 PF10274 ParcG: Parkin co-regu 56.4 1.2E+02 0.0027 26.7 9.3 74 249-323 38-111 (183)
311 PF11791 Aconitase_B_N: Aconit 56.1 29 0.00062 29.4 5.1 46 350-407 79-124 (154)
312 KOG2011 Sister chromatid cohes 55.4 88 0.0019 35.5 10.1 97 302-401 297-394 (1048)
313 COG5209 RCD1 Uncharacterized p 54.7 1.7E+02 0.0037 26.7 12.8 139 267-407 118-269 (315)
314 PF12231 Rif1_N: Rap1-interact 54.1 2.4E+02 0.0053 28.3 21.3 133 220-362 59-203 (372)
315 cd00197 VHS_ENTH_ANTH VHS, ENT 53.8 1E+02 0.0022 24.6 8.2 70 334-403 37-112 (115)
316 KOG4464 Signaling protein RIC- 53.4 2.5E+02 0.0054 28.2 18.1 135 251-388 47-198 (532)
317 PF04388 Hamartin: Hamartin pr 53.1 2.9E+02 0.0062 30.3 13.6 135 121-277 4-139 (668)
318 KOG1848 Uncharacterized conser 53.1 4.5E+02 0.0098 31.1 16.0 59 442-500 1073-1132(1610)
319 PF08216 CTNNBL: Catenin-beta- 53.1 19 0.0004 28.6 3.4 43 225-268 64-106 (108)
320 KOG0392 SNF2 family DNA-depend 52.8 1.4E+02 0.0031 34.4 11.1 229 122-364 78-326 (1549)
321 PF12726 SEN1_N: SEN1 N termin 52.5 81 0.0018 35.0 9.6 113 292-406 441-553 (727)
322 KOG2549 Transcription initiati 52.3 3E+02 0.0065 28.8 12.7 109 250-361 240-368 (576)
323 KOG0889 Histone acetyltransfer 49.8 6.5E+02 0.014 33.2 16.6 290 250-546 985-1306(3550)
324 PLN03076 ARF guanine nucleotid 48.3 6.3E+02 0.014 31.4 23.0 190 165-363 1138-1376(1780)
325 PF04869 Uso1_p115_head: Uso1 48.0 2.7E+02 0.0059 27.1 14.3 156 335-498 35-229 (312)
326 PF01603 B56: Protein phosphat 47.4 3.3E+02 0.0071 27.8 16.4 233 245-500 129-370 (409)
327 PF04388 Hamartin: Hamartin pr 46.6 4.3E+02 0.0094 29.0 14.8 140 292-455 4-144 (668)
328 cd00197 VHS_ENTH_ANTH VHS, ENT 46.6 1.5E+02 0.0033 23.7 8.8 72 471-545 37-114 (115)
329 PF14666 RICTOR_M: Rapamycin-i 46.3 2E+02 0.0043 26.6 9.5 130 7-150 77-225 (226)
330 PF08389 Xpo1: Exportin 1-like 46.3 98 0.0021 25.8 7.4 63 422-495 83-148 (148)
331 PF07539 DRIM: Down-regulated 46.3 1.2E+02 0.0026 25.6 7.5 80 77-173 17-97 (141)
332 PF12463 DUF3689: Protein of u 45.5 2.9E+02 0.0064 26.7 12.9 79 333-411 94-178 (303)
333 PF11791 Aconitase_B_N: Aconit 45.2 1.5E+02 0.0033 25.2 7.7 44 439-500 80-123 (154)
334 KOG2005 26S proteasome regulat 44.3 4.4E+02 0.0096 28.5 13.4 58 474-542 643-700 (878)
335 PF14663 RasGEF_N_2: Rapamycin 42.6 89 0.0019 25.2 6.0 38 293-331 9-46 (115)
336 KOG1992 Nuclear export recepto 42.6 5.2E+02 0.011 28.7 27.0 124 168-306 10-140 (960)
337 PF04821 TIMELESS: Timeless pr 42.3 3.1E+02 0.0066 26.0 10.6 18 390-407 133-150 (266)
338 PF03130 HEAT_PBS: PBS lyase H 41.9 42 0.00092 18.9 2.9 14 438-451 1-14 (27)
339 cd03572 ENTH_epsin_related ENT 41.7 2E+02 0.0042 23.6 8.1 68 98-173 23-91 (122)
340 KOG2199 Signal transducing ada 40.2 1.6E+02 0.0035 29.2 8.1 94 387-499 22-117 (462)
341 KOG0891 DNA-dependent protein 40.1 9.2E+02 0.02 30.9 16.1 160 289-453 562-721 (2341)
342 smart00567 EZ_HEAT E-Z type HE 40.1 53 0.0011 18.8 3.3 28 136-175 2-29 (30)
343 KOG2549 Transcription initiati 39.5 3.2E+02 0.0069 28.7 10.4 144 122-278 208-370 (576)
344 KOG2081 Nuclear transport regu 38.6 4.9E+02 0.011 27.4 22.2 103 207-321 389-495 (559)
345 KOG1087 Cytosolic sorting prot 38.3 2.1E+02 0.0046 29.6 9.2 96 300-404 13-110 (470)
346 KOG1525 Sister chromatid cohes 37.9 7.6E+02 0.017 29.4 23.1 147 377-546 259-405 (1266)
347 PF06012 DUF908: Domain of Unk 36.7 2E+02 0.0043 28.3 8.6 57 52-108 238-300 (329)
348 PF12054 DUF3535: Domain of un 36.5 5E+02 0.011 26.8 16.2 109 222-335 102-211 (441)
349 PF08216 CTNNBL: Catenin-beta- 35.5 26 0.00057 27.8 1.8 43 11-54 63-105 (108)
350 PF14663 RasGEF_N_2: Rapamycin 35.3 99 0.0021 25.0 5.2 36 36-71 8-43 (115)
351 PF10274 ParcG: Parkin co-regu 33.8 3.4E+02 0.0074 24.1 9.9 76 36-111 38-115 (183)
352 PF14726 RTTN_N: Rotatin, an a 33.6 2.3E+02 0.0051 22.1 8.0 76 13-88 6-82 (98)
353 PF07923 N1221: N1221-like pro 33.4 94 0.002 30.0 5.7 58 470-527 59-126 (293)
354 cd08050 TAF6 TATA Binding Prot 33.3 4.9E+02 0.011 25.8 12.7 101 437-551 232-342 (343)
355 PF01365 RYDR_ITPR: RIH domain 33.1 1.8E+02 0.0039 26.3 7.2 103 197-303 35-153 (207)
356 KOG2676 Uncharacterized conser 31.7 47 0.001 32.4 3.1 65 183-247 376-440 (478)
357 KOG1924 RhoA GTPase effector D 30.2 7.9E+02 0.017 27.2 15.7 58 7-65 205-263 (1102)
358 KOG1087 Cytosolic sorting prot 29.9 3.1E+02 0.0067 28.4 8.8 93 385-496 13-108 (470)
359 KOG1993 Nuclear transport rece 29.8 8.1E+02 0.018 27.2 19.4 274 250-545 527-811 (978)
360 KOG2199 Signal transducing ada 28.2 5.9E+02 0.013 25.6 9.7 73 471-546 45-118 (462)
361 PF07571 DUF1546: Protein of u 27.4 1.7E+02 0.0038 22.4 5.2 58 260-319 17-76 (92)
362 PF04499 SAPS: SIT4 phosphatas 27.1 7.4E+02 0.016 25.9 12.1 57 469-525 60-126 (475)
363 PF07571 DUF1546: Protein of u 26.7 1.7E+02 0.0037 22.5 5.0 58 303-361 17-76 (92)
364 PF14225 MOR2-PAG1_C: Cell mor 26.5 5.6E+02 0.012 24.2 18.4 71 469-548 186-256 (262)
365 KOG2149 Uncharacterized conser 26.1 6.7E+02 0.015 25.2 10.0 116 250-367 59-174 (393)
366 cd07064 AlkD_like_1 A new stru 25.9 5E+02 0.011 23.5 13.3 138 254-417 51-190 (208)
367 cd06561 AlkD_like A new struct 25.7 2.8E+02 0.006 24.5 7.2 72 337-416 108-180 (197)
368 PF07923 N1221: N1221-like pro 25.0 1.2E+02 0.0027 29.2 4.9 57 289-345 57-127 (293)
369 KOG4524 Uncharacterized conser 24.2 3.3E+02 0.0071 30.7 8.1 88 82-174 808-899 (1014)
370 COG5537 IRR1 Cohesin [Cell div 24.1 9.1E+02 0.02 25.9 11.3 134 89-236 288-422 (740)
371 KOG2676 Uncharacterized conser 23.6 73 0.0016 31.1 2.8 55 226-280 375-431 (478)
372 PF14726 RTTN_N: Rotatin, an a 23.0 3.7E+02 0.0081 21.0 10.1 80 136-217 2-82 (98)
373 PF11935 DUF3453: Domain of un 22.9 6.2E+02 0.013 23.5 11.1 119 343-461 2-155 (239)
374 KOG0301 Phospholipase A2-activ 22.2 1E+03 0.022 25.8 15.8 163 173-344 554-726 (745)
375 KOG4524 Uncharacterized conser 22.2 2.5E+02 0.0054 31.6 6.7 93 249-344 803-899 (1014)
376 PF11935 DUF3453: Domain of un 20.9 6.8E+02 0.015 23.2 11.9 116 300-415 1-154 (239)
377 KOG1988 Uncharacterized conser 20.3 1.3E+03 0.027 26.1 13.4 210 253-499 67-280 (970)
378 PF06012 DUF908: Domain of Unk 20.3 5.3E+02 0.011 25.3 8.3 56 7-66 1-56 (329)
379 PF08713 DNA_alkylation: DNA a 20.2 6.3E+02 0.014 22.5 16.1 139 337-514 54-194 (213)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.9e-48 Score=427.57 Aligned_cols=527 Identities=18% Similarity=0.170 Sum_probs=439.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCCh---hhH-HHHHhcCc
Q 008827 3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTS---LEQ-KLLFDAGV 78 (552)
Q Consensus 3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~---~~~-~~l~~~g~ 78 (552)
|.+.+..+...++.+|.+++..+... ..+...+.+|+|+.+|++.+...++.|+.+|.+++... +++ ......|+
T Consensus 67 L~sg~~~vk~nAaaaL~nLS~~e~nk-~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~Ga 145 (2102)
T PLN03200 67 LRSGTLGAKVNAAAVLGVLCKEEDLR-VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGV 145 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCHHHH-HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCC
Confidence 34566677778889999998776555 55567899999999999999999999999999998763 334 44667999
Q ss_pred hHHHHHhhcCC---H-HHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827 79 LKRLTSLLGGS---L-IQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154 (552)
Q Consensus 79 i~~L~~lL~~~---~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~ 154 (552)
||+|+.++++. + .++..+..+|.+|+...++..+.+.+ .|.++.++.+++++++.+|..|+.+|.+++.+.++
T Consensus 146 Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIe---aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee 222 (2102)
T PLN03200 146 VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE---AGGVDILVKLLSSGNSDAQANAASLLARLMMAFES 222 (2102)
T ss_pred hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 99999999962 2 36778889999999888777655553 68999999999999999999999999988876543
Q ss_pred cchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCC-------ChhhHH
Q 008827 155 YLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL-------HPRRFE 225 (552)
Q Consensus 155 ~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~-------~~~~~~ 225 (552)
....+++.|++|.|+++|++ +..+|++|+++|.+++++++++++.+++.|++|.|++++..+.. ....++
T Consensus 223 -~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe 301 (2102)
T PLN03200 223 -SISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQE 301 (2102)
T ss_pred -HHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHH
Confidence 46678899999999999974 34789999999999999999999999999999999998875431 234689
Q ss_pred HHHHHHHHhhcCChh-----------HH----------------------------------------------------
Q 008827 226 GILLALADMCSKLEC-----------CR---------------------------------------------------- 242 (552)
Q Consensus 226 ~a~~aL~~l~~~~~~-----------~~---------------------------------------------------- 242 (552)
+|+|+|+|+|.+.+. .|
T Consensus 302 ~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe 381 (2102)
T PLN03200 302 NAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQE 381 (2102)
T ss_pred HHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHH
Confidence 999999998874211 00
Q ss_pred ----------------HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCH
Q 008827 243 ----------------SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 306 (552)
Q Consensus 243 ----------------~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 306 (552)
+.+.+.++++.++.++...+.++|..++++|++++.+....++. +.+.|++|.|+++|.++++
T Consensus 382 ~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a-Ii~~ggIp~LV~LL~s~s~ 460 (2102)
T PLN03200 382 RIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEA-LGGREGVQLLISLLGLSSE 460 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHH-HHHcCcHHHHHHHHcCCCH
Confidence 00111234455566666666789999999999999876666666 8899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh
Q 008827 307 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI 386 (552)
Q Consensus 307 ~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll 386 (552)
.+|..|+++|+|++.+.+..+..+++.|++|.|+++|.+++..++++|+|+|.|++.+ +++.+..+.+.|.++.|+++|
T Consensus 461 ~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL 539 (2102)
T PLN03200 461 QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLL 539 (2102)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999988888888999999999999999999999999999999999884 345566666889999999999
Q ss_pred cCCChhHHHHHHHHHHHhhcCCc-chHH---------------HHH---------------------hhcCchHHHHHHH
Q 008827 387 CDPEPSVQEQALALVRNLVDGRI-NSVE---------------YIF---------------------AEDGIILDAVGRQ 429 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~~-~~~~---------------~i~---------------------~~~~~~~~~l~~~ 429 (552)
++.+++.++.++++|.|++.+.. +.+. .++ ..+ .++.|.++
T Consensus 540 ~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g--gL~~Lv~L 617 (2102)
T PLN03200 540 KNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND--ALRTLIQL 617 (2102)
T ss_pred hCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc--cHHHHHHH
Confidence 99999999999999999974321 1111 000 112 57899999
Q ss_pred hcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHH
Q 008827 430 LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR 509 (552)
Q Consensus 430 L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 509 (552)
|++ +++++++.|+|+|.|++.+..+.++.++. .|++++++.+|++++.+++++|+|+|++++. ++..++
T Consensus 618 L~s-gs~~ikk~Aa~iLsnL~a~~~d~~~avv~-------agaIpPLV~LLss~~~~v~keAA~AL~nL~~---~~~~~q 686 (2102)
T PLN03200 618 LSS-SKEETQEKAASVLADIFSSRQDLCESLAT-------DEIINPCIKLLTNNTEAVATQSARALAALSR---SIKENR 686 (2102)
T ss_pred HcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHH-------cCCHHHHHHHHhcCChHHHHHHHHHHHHHHh---CCCHHH
Confidence 998 89999999999999999999888888876 7999999999999999999999999999995 466777
Q ss_pred HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827 510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~ 549 (552)
+..+.+.|++++|++++++++.++++.|..||.++.+..|
T Consensus 687 ~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 687 KVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 8888999999999999999999999999999999998765
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=409.77 Aligned_cols=516 Identities=16% Similarity=0.160 Sum_probs=424.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCC-hhhHHHHHhcCchHHHHHhhcC
Q 008827 10 VVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKT-SLEQKLLFDAGVLKRLTSLLGG 88 (552)
Q Consensus 10 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~-~~~~~~l~~~g~i~~L~~lL~~ 88 (552)
+.+.+..+|.+++..+...+..+++.+++|.++.+|+++++..++.++.++.+++.. .+.+..+.+.|+||.|+++|++
T Consensus 163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s 242 (2102)
T PLN03200 163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ 242 (2102)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence 445567899999988877755567899999999999999999999999999887755 4568888999999999999975
Q ss_pred --CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCC---------hhhHHHHHHHHHHHhhhCCC---
Q 008827 89 --SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRF---------ARTRLLASLCLIVIRNASPC--- 154 (552)
Q Consensus 89 --~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~---------~~vr~~A~~~L~~l~~~~~~--- 154 (552)
+..+|+.|..+|++|+.++++.++.+.+ .|+++.++.++.+++ ...+..|+++|.|++.....
T Consensus 243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~---aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~ 319 (2102)
T PLN03200 243 GNEVSVRAEAAGALEALSSQSKEAKQAIAD---AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALIL 319 (2102)
T ss_pred CCChHHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHH
Confidence 4589999999999999998888877764 789999999887654 34589999999999874211
Q ss_pred -------cchhh--h-hHHhHH-----------------------HHHHHhcCCC-C-chhchHHHHHHHhhcCCHHHHH
Q 008827 155 -------YLQDV--G-IKTKLI-----------------------NNLLELLDDP-G-RVGDEASFAFSSLIAEKEDMQK 199 (552)
Q Consensus 155 -------~~~~~--~-~~~g~i-----------------------~~Lv~ll~~~-~-~v~~~a~~~L~~l~~~~~~~~~ 199 (552)
..++. . ...|++ +.|+++++.. + .++..+..+|..+. .++..++
T Consensus 320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~-gN~~l~~ 398 (2102)
T PLN03200 320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY-GNAYLSR 398 (2102)
T ss_pred HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHH
Confidence 00011 1 112334 4555555521 2 23445555555544 3455566
Q ss_pred HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827 200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 279 (552)
Q Consensus 200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~ 279 (552)
.+.+.++++.|+++|.... .+.++.++++|.+++.++++.++.+.+.|++|.|+++|++++..+|..+++++++++..
T Consensus 399 ~L~~~daik~LV~LL~~~~--~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 399 KLNHAEAKKVLVGLITMAT--ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HHHhccchhhhhhhhccCC--HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 6778899999999998774 78999999999999988889999999999999999999999999999999999999986
Q ss_pred cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827 280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359 (552)
Q Consensus 280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 359 (552)
.+..+.. +.+.|++|+|+++|.+++.++++.|+|+|+|++.+.+..+..+.+.|++++|+++|++++.+.+..++|+|.
T Consensus 477 ndenr~a-IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~ 555 (2102)
T PLN03200 477 VDESKWA-ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLT 555 (2102)
T ss_pred CHHHHHH-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555666 889999999999999999999999999999999866555655667899999999999999999999999999
Q ss_pred HhcccCChH---------------hHH---------------------HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHH
Q 008827 360 NLIFLAEDK---------------CKE---------------------EIFMELTASLLASLICDPEPSVQEQALALVRN 403 (552)
Q Consensus 360 ~l~~~~~~~---------------~~~---------------------~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~ 403 (552)
|++...+++ .+. .....++++.|.++++++++.+++.|+|+|.+
T Consensus 556 nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsn 635 (2102)
T PLN03200 556 KLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLAD 635 (2102)
T ss_pred HHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 997533321 111 01134789999999999999999999999999
Q ss_pred hhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcC
Q 008827 404 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQS 482 (552)
Q Consensus 404 l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~ 482 (552)
++.++++..+.++..+ .++.++.+|++ ++.+++..++|+|+|++.+.. .++..+++ .|++++|+++|++
T Consensus 636 L~a~~~d~~~avv~ag--aIpPLV~LLss-~~~~v~keAA~AL~nL~~~~~~~q~~~~v~-------~GaV~pL~~LL~~ 705 (2102)
T PLN03200 636 IFSSRQDLCESLATDE--IINPCIKLLTN-NTEAVATQSARALAALSRSIKENRKVSYAA-------EDAIKPLIKLAKS 705 (2102)
T ss_pred HhcCChHHHHHHHHcC--CHHHHHHHHhc-CChHHHHHHHHHHHHHHhCCCHHHHHHHHH-------cCCHHHHHHHHhC
Confidence 9999988888888888 68999999988 889999999999999997443 34445565 8999999999999
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 483 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
++..++..|+.+|.|++. ..+....+...|++++|+++++++++++|+.|.|||.++.+.
T Consensus 706 ~d~~v~e~Al~ALanLl~-----~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 706 SSIEVAEQAVCALANLLS-----DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred CChHHHHHHHHHHHHHHc-----CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 999999999999999995 334567788899999999999999999999999999888754
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-41 Score=329.09 Aligned_cols=370 Identities=21% Similarity=0.286 Sum_probs=324.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHH
Q 008827 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKL 200 (552)
Q Consensus 123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~ 200 (552)
....+..+.++++..+..|...+..+.........+.++..|++|.+|+.++ +++.++.+|+|+|+|++++..+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5566778889999999999999999877766556777888899999999997 45789999999999999999999999
Q ss_pred HHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH-HHHHHHHHHHHHhhcc
Q 008827 201 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACMCLRSVSRS 279 (552)
Q Consensus 201 ~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~-~v~~~a~~~L~~ls~~ 279 (552)
++++|++|.|+.++.+++ ..++++|+|+|++++.+.+.+|..+++.|++++++.++...+. .....+.|+|.||+++
T Consensus 148 vv~agavp~fi~Ll~s~~--~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPS--ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCc--HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 999999999999888874 8899999999999999999999999999999999999997765 8889999999999998
Q ss_pred cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827 280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359 (552)
Q Consensus 280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 359 (552)
......- -.-..++|.|..++.+.|+++...|+||+++|+.+..+..+.+++.|+++.|+.+|.+++..++..|+++++
T Consensus 226 k~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 226 KNPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred CCCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 5322211 134688999999999999999999999999999998888999999999999999999998888888888888
Q ss_pred HhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHH
Q 008827 360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 439 (552)
Q Consensus 360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~ 439 (552)
|++.+.+ .+++.++..+ .++.|..++..++...++
T Consensus 305 NIvtG~d-------------------------------------------~QTq~vi~~~--~L~~l~~ll~~s~~~~ik 339 (514)
T KOG0166|consen 305 NIVTGSD-------------------------------------------EQTQVVINSG--ALPVLSNLLSSSPKESIK 339 (514)
T ss_pred ceeeccH-------------------------------------------HHHHHHHhcC--hHHHHHHHhccCcchhHH
Confidence 8776543 2344444445 677888888765788899
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcH
Q 008827 440 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIV 519 (552)
Q Consensus 440 ~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~ 519 (552)
..|||+++|+++|+..+.+.+++ .|++|.|+.+|++++++.|++|+|+|+|++. +|+.++..+|++.|++
T Consensus 340 kEAcW~iSNItAG~~~qiqaVid-------a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~giI 409 (514)
T KOG0166|consen 340 KEACWTISNITAGNQEQIQAVID-------ANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQGII 409 (514)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHH-------cccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcCCc
Confidence 99999999999999999999997 8999999999999999999999999999994 6889999999999999
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827 520 SHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 550 (552)
Q Consensus 520 ~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~ 550 (552)
++|..++.-.+.++-..+..+|+++.+.+|+
T Consensus 410 ~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 410 KPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred hhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999755556667889999999998765
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.1e-40 Score=297.79 Aligned_cols=373 Identities=17% Similarity=0.206 Sum_probs=314.5
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHHH
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~ 198 (552)
.-+|.+.+.+.++|.+.+..|..-+..+.+.....-.+.+++.|++|.+++++++ ..-.+.+|+|+|+|++++.....
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 3568888888999999999999888887776655567889999999999999973 34568999999999999988887
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH--HHHHHHHHHHHHh
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS--DVRSAACMCLRSV 276 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~--~v~~~a~~~L~~l 276 (552)
+.++++|++|.++++|.++. .+++++++|+|++++.+++.+|+.+.+.|.+.+++.++.+.-. .+...+.|.|.||
T Consensus 151 kvVvd~~AVPlfiqlL~s~~--~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTE--DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred EEEEeCCchHHHHHHHcCch--HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 88899999999999998875 7799999999999999999999999999999999999986544 7889999999999
Q ss_pred hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 356 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 356 (552)
++.. +....+-.-...+|.|.+++...|+++...|+||+++++.+..+..+.+++.|..+.|+++|.+++..++..+++
T Consensus 229 cRGk-nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 229 CRGK-NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hCCC-CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 9873 322221234577899999999999999999999999999988877788888888888888888777666666666
Q ss_pred HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCch
Q 008827 357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 436 (552)
Q Consensus 357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~ 436 (552)
.++|+..+. +++.+.++..| +++.+..+|.+ ++.
T Consensus 308 ~vGNIVTG~-------------------------------------------D~QTqviI~~G--~L~a~~~lLs~-~ke 341 (526)
T COG5064 308 SVGNIVTGS-------------------------------------------DDQTQVIINCG--ALKAFRSLLSS-PKE 341 (526)
T ss_pred hhcCeeecC-------------------------------------------ccceehheecc--cHHHHHHHhcC-hhh
Confidence 666665543 34455556656 67777777777 888
Q ss_pred hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC
Q 008827 437 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA 516 (552)
Q Consensus 437 ~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~ 516 (552)
.++..+||.++|+++|+..+.+.+++ .+++|.|+.+|++.+...|++|||+++|.++. ..+.++.+++|++.
T Consensus 342 ~irKEaCWTiSNITAGnteqiqavid-------~nliPpLi~lls~ae~k~kKEACWAisNatsg-g~~~PD~iryLv~q 413 (526)
T COG5064 342 NIRKEACWTISNITAGNTEQIQAVID-------ANLIPPLIHLLSSAEYKIKKEACWAISNATSG-GLNRPDIIRYLVSQ 413 (526)
T ss_pred hhhhhhheeecccccCCHHHHHHHHh-------cccchHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCchHHHHHHHc
Confidence 99999999999999999999999997 89999999999999999999999999999962 22457899999999
Q ss_pred CcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827 517 GIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 550 (552)
Q Consensus 517 g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~ 550 (552)
|++.+|..++.-.+..+-+-+..|++++.+.+++
T Consensus 414 G~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 414 GFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447 (526)
T ss_pred cchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence 9999999999744445566778999999988764
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=275.69 Aligned_cols=324 Identities=18% Similarity=0.271 Sum_probs=278.6
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHhhcC--ChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccc
Q 008827 207 VDKLYNHLQKGSLHPRRFEGILLALADMCSK--LECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNL 283 (552)
Q Consensus 207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~ 283 (552)
.+..+..+.+.. +..+..+...+..+... ++.. ..+...|.+|.++.+|+ +.++.++..|+|+|.|++...+..
T Consensus 68 ~~~~~~~~~S~~--~~~q~~a~~~~rkllS~~~~ppi-~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 68 LELMLAALYSDD--PQQQLTATQAFRKLLSKERNPPI-DEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred hHHHHHHHhCCC--HHHHHHHHHHHHHHHccCCCCCH-HHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence 344455455542 54566666666655442 2333 44555599999999997 667999999999999999886655
Q ss_pred cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhc
Q 008827 284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNALRALRNLI 362 (552)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~aL~~l~ 362 (552)
... ++++|.+|.+++++.+++..+++.|+|||+|++.+.+.+|..+++.|++++|+.++..++. ....++.|+|.|+|
T Consensus 145 T~~-vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 145 TKV-VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred ccc-cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 555 7899999999999999999999999999999999999999999999999999999988765 78899999999999
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH
Q 008827 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG 442 (552)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a 442 (552)
++.+|.-.... -...++.|..++.+.|+++...|+|++++++++.++.++.+++.| +++.|+.+|.+ +++.++..|
T Consensus 224 rgk~P~P~~~~-v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g--vv~~LV~lL~~-~~~~v~~Pa 299 (514)
T KOG0166|consen 224 RGKNPSPPFDV-VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG--VVPRLVDLLGH-SSPKVVTPA 299 (514)
T ss_pred cCCCCCCcHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc--chHHHHHHHcC-CCcccccHH
Confidence 98754222222 234689999999999999999999999999999999999999998 89999999998 888999999
Q ss_pred HHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHH
Q 008827 443 MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH 521 (552)
Q Consensus 443 ~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~ 521 (552)
+.+++|+++|+..+.+.++. +|+++.|..++. ++....|++|+|+|+|++. |++++++.+.+.|.+|.
T Consensus 300 LRaiGNIvtG~d~QTq~vi~-------~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA----G~~~qiqaVida~l~p~ 368 (514)
T KOG0166|consen 300 LRAIGNIVTGSDEQTQVVIN-------SGALPVLSNLLSSSPKESIKKEACWTISNITA----GNQEQIQAVIDANLIPV 368 (514)
T ss_pred HhhccceeeccHHHHHHHHh-------cChHHHHHHHhccCcchhHHHHHHHHHHHhhc----CCHHHHHHHHHcccHHH
Confidence 99999999999999998886 899999999998 5667799999999999996 89999999999999999
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827 522 VKNMVNDPCLDVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 522 L~~ll~~~~~~v~~~a~~al~~~~~~~~ 549 (552)
|+.+++++..+.|..|+||+.++...+.
T Consensus 369 Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 369 LINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 9999998889999999999999877653
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-33 Score=256.70 Aligned_cols=402 Identities=16% Similarity=0.157 Sum_probs=339.1
Q ss_pred cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhh
Q 008827 34 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS 112 (552)
Q Consensus 34 ~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~ 112 (552)
+.+...++..++.+.++.++.++...+.+++.+.+++..+++.+++++|+.-..+ ...+|.++..|+.+++..++.. .
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk-~ 161 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNK-V 161 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccch-h
Confidence 3467788899999999999999999999999888888888888888877655554 5688999999999998774443 3
Q ss_pred hhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhh
Q 008827 113 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLI 191 (552)
Q Consensus 113 ~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~ 191 (552)
.++. .|++.++.++.++++..+|..|...|.++..... .+...+.+|++|.|+++++ .+.++|..++.++++++
T Consensus 162 kiA~---sGaL~pltrLakskdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 162 KIAR---SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA 236 (550)
T ss_pred hhhh---ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh
Confidence 5543 7889999999999999999999999999988654 3567889999999999999 57899999999999999
Q ss_pred cCCHHHHHHHHHhC--cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHH
Q 008827 192 AEKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAA 269 (552)
Q Consensus 192 ~~~~~~~~~~~~~~--~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a 269 (552)
.+.. .++...+.+ .+|.|+++..+++ ++++-+|..+|.+++. +++++..+++.|.+|.++++++++.-+...+.
T Consensus 237 Vd~~-~Rk~Laqaep~lv~~Lv~Lmd~~s--~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilas 312 (550)
T KOG4224|consen 237 VDRR-ARKILAQAEPKLVPALVDLMDDGS--DKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILAS 312 (550)
T ss_pred hhHH-HHHHHHhcccchHHHHHHHHhCCC--hHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHH
Confidence 7654 466777777 7999999888774 8899999999999986 46788899999999999999999999999999
Q ss_pred HHHHHHhhcccccccchhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH
Q 008827 270 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 348 (552)
Q Consensus 270 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 348 (552)
+.|++|++.+.-+ ... +.+.|++.|||++|+.. +++++..|..+|.|++..+..++..+.+.|++|.+.+++.++..
T Consensus 313 VaCIrnisihplN-e~l-I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv 390 (550)
T KOG4224|consen 313 VACIRNISIHPLN-EVL-IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV 390 (550)
T ss_pred HHHHhhcccccCc-ccc-eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh
Confidence 9999999987433 223 78999999999999864 56699999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-c---CchHH
Q 008827 349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-D---GIILD 424 (552)
Q Consensus 349 ~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~---~~~~~ 424 (552)
.+|.....++..++... ..|..+.+.|.++.|+.++.+.+.+++.++..+|.|++....+ ...+++. + +-+-.
T Consensus 391 svqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-YarviEawd~P~~gi~g 467 (550)
T KOG4224|consen 391 SVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-YARVIEAWDHPVQGIQG 467 (550)
T ss_pred hHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-HHHHHHHhcCcchhHHH
Confidence 99999888899888743 4789999999999999999999999999999999999977543 3334332 1 11456
Q ss_pred HHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827 425 AVGRQLRIASKAEIEIQGMYVLGNVAT 451 (552)
Q Consensus 425 ~l~~~L~~~~~~~v~~~a~~~L~~la~ 451 (552)
.|.+++.+ ....++.-+.|.+..+..
T Consensus 468 ~L~Rfl~S-~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 468 RLARFLAS-HELTFRHIARWTIQQLLE 493 (550)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence 67777776 666777788888887775
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-33 Score=254.80 Aligned_cols=327 Identities=18% Similarity=0.217 Sum_probs=277.2
Q ss_pred cHHHHHHhhhcCCCChhhHHHHHHHHHHhhc-CChhHHHHHHhcccHHHHHHhc-CCCCHHHHHHHHHHHHHhhcccccc
Q 008827 206 GVDKLYNHLQKGSLHPRRFEGILLALADMCS-KLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNL 283 (552)
Q Consensus 206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~~l~~lv~~L-~~~~~~v~~~a~~~L~~ls~~~~~~ 283 (552)
-+|.+..-|.+. +.+.+..+..-+..+.+ .+....+.+++.|.+|.++++| +......+..|+|+|.|++....+.
T Consensus 72 elp~lt~~l~Sd--Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 72 ELPQLTQQLFSD--DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhHHHHHHHhhh--HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 356666655554 24445555544444433 3333446788999999999999 5677888999999999998876554
Q ss_pred cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH--HHHHHHHHHHHHh
Q 008827 284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS--TIRLNALRALRNL 361 (552)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~a~~aL~~l 361 (552)
... .++.|.+|.++++|.+++.++++.++|||+|++.+++.+|..+++.|++++++.++.++.. ....++.|+|+|+
T Consensus 150 Tkv-Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 150 TKV-VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred eEE-EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 444 7899999999999999999999999999999999999999999999999999999987654 6788999999999
Q ss_pred cccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHH
Q 008827 362 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ 441 (552)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~ 441 (552)
|++..|.-.-..+ ...++.|.+++.+.|+++...|+|++..+..+..+.++.++..| +...|+.+|.+ ++..|+..
T Consensus 229 cRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g--~~~RLvElLs~-~sa~iqtP 304 (526)
T COG5064 229 CRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG--IPGRLVELLSH-ESAKIQTP 304 (526)
T ss_pred hCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcC--CcHHHHHHhcC-ccccccCH
Confidence 9986552222222 23689999999999999999999999999999999999999988 78899999988 89999999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHH
Q 008827 442 GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH 521 (552)
Q Consensus 442 a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~ 521 (552)
++..++|+.+|+..+.+.++. +|+++++-.+|+++...+|++|||+|+|++. |+.++++...+.+.+|+
T Consensus 305 alR~vGNIVTG~D~QTqviI~-------~G~L~a~~~lLs~~ke~irKEaCWTiSNITA----Gnteqiqavid~nliPp 373 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIIN-------CGALKAFRSLLSSPKENIRKEACWTISNITA----GNTEQIQAVIDANLIPP 373 (526)
T ss_pred HHHhhcCeeecCccceehhee-------cccHHHHHHHhcChhhhhhhhhheeeccccc----CCHHHHHHHHhcccchH
Confidence 999999999999888888886 9999999999999999999999999999996 89999999999999999
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827 522 VKNMVNDPCLDVKLRVKTALEQFNSFDDS 550 (552)
Q Consensus 522 L~~ll~~~~~~v~~~a~~al~~~~~~~~~ 550 (552)
|++++.......|..|+||+.+...-+.+
T Consensus 374 Li~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 374 LIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 99999876777888999999987665543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-31 Score=241.09 Aligned_cols=445 Identities=17% Similarity=0.162 Sum_probs=355.8
Q ss_pred ccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhh
Q 008827 33 LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV 111 (552)
Q Consensus 33 ~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~ 111 (552)
+..+.+..+.-|--|+..+.+..++-.++......- |. +.....+++.-++++ ...++..+-.++++++-...+.
T Consensus 44 yS~~plraltvL~ySDnlnlqrsaalafAeitek~v-r~--Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk- 119 (550)
T KOG4224|consen 44 YSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGV-RR--VSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENK- 119 (550)
T ss_pred cCCCccchheeeeeccccccchHHHHHHHHHHHHHH-HH--hhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCc-
Confidence 333334433333345566666666666555542111 11 234567788888887 5689999999999988654332
Q ss_pred hhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHh
Q 008827 112 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSL 190 (552)
Q Consensus 112 ~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l 190 (552)
.-+++ -.++..++.-+..+...+|..|++|+++++..+.. +..+...|++.++.++-+ ++..+|..+..+|.+|
T Consensus 120 ~liv~---l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~n--k~kiA~sGaL~pltrLakskdirvqrnatgaLlnm 194 (550)
T KOG4224|consen 120 GLIVS---LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSN--KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNM 194 (550)
T ss_pred eEEEe---ccChHHHHHHhcCCCcEEEeeehhhhhhhhccccc--hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHh
Confidence 22332 46777788777888999999999999999987544 445778899999999776 5678999999999999
Q ss_pred hcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcc--cHHHHHHhcCCCCHHHHHH
Q 008827 191 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ--VLKLVVDALAHDSSDVRSA 268 (552)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~--~l~~lv~~L~~~~~~v~~~ 268 (552)
. +..++++..+..|++|.|+++++.++ ++++..+..++++++. +...|+.+.+.+ ++|.+++++.++++.++..
T Consensus 195 T-hs~EnRr~LV~aG~lpvLVsll~s~d--~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcq 270 (550)
T KOG4224|consen 195 T-HSRENRRVLVHAGGLPVLVSLLKSGD--LDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQ 270 (550)
T ss_pred h-hhhhhhhhhhccCCchhhhhhhccCC--hhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHH
Confidence 7 45567888999999999999998875 8899999999999986 567888888887 9999999999999999999
Q ss_pred HHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-C
Q 008827 269 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-D 347 (552)
Q Consensus 269 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~ 347 (552)
|..+|++++...+..+ . ++++|.+|.++++++++.-....+.+.++.|++-.. -+...+.+.|.+.+|+++|... +
T Consensus 271 A~lALrnlasdt~Yq~-e-iv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 271 AGLALRNLASDTEYQR-E-IVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred HHHHHhhhcccchhhh-H-HHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcCCc
Confidence 9999999998755443 4 799999999999999987777788888999998643 3444788899999999999875 5
Q ss_pred HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHH
Q 008827 348 STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG 427 (552)
Q Consensus 348 ~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~ 427 (552)
++++..|..+|.|++.. ...++..+.+.|.++.+..++.+...++|.....++.-++.++. ...++.+.| +++.|.
T Consensus 348 EeiqchAvstLrnLAas-se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~-~k~~lld~g--i~~iLI 423 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAAS-SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN-DKEALLDSG--IIPILI 423 (550)
T ss_pred hhhhhhHHHHHHHHhhh-hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc-cHHHHhhcC--Ccceee
Confidence 67999999999999873 34688899999999999999999999999999999988887654 345666666 788888
Q ss_pred HHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 428 ~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.+..+ .+.+++.+++.+|.|++..-+ +-..+++ .|..+..|+-.+|++++.|.+..++..+.|+|..+..
T Consensus 424 p~t~s-~s~Ev~gNaAaAL~Nlss~v~-~YarviE-awd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 424 PWTGS-ESEEVRGNAAAALINLSSDVE-HYARVIE-AWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred cccCc-cchhhcccHHHHHHhhhhhhH-HHHHHHH-HhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 87777 889999999999999997544 4555665 3444445777789999999999999999999999996
No 9
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.97 E-value=1.3e-27 Score=234.96 Aligned_cols=521 Identities=24% Similarity=0.261 Sum_probs=361.1
Q ss_pred CCCCc-HHHHHHHHHHHHHHHcCC-CCCCccccccc-chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827 3 LLKSY-MEVVDAGARSLKMIYQSK-MAPKYDFLQEE-NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 79 (552)
Q Consensus 3 ~~~~~-~~~~~~~l~~l~~l~~~~-~~~~~~~~~~~-~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i 79 (552)
|++++ .++++.+++|+++++.+. ..+++...... .++.+..+++-+.+.+.+.-+...+++|+...++..++..|+.
T Consensus 104 Ls~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ 183 (678)
T KOG1293|consen 104 LSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGIL 183 (678)
T ss_pred hcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccch
Confidence 46677 899999999999998775 55544444334 4455554444367788899999999999999999999999999
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHH---HHhcCChhhhhhhccc-cCCccHH--HHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827 80 KRLTSLLGG-SLIQRDASLESIA---TIFKNNPEVVSQFVGP-DTGRTLS--CIIEIVKDRFARTRLLASLCLIVIRNAS 152 (552)
Q Consensus 80 ~~L~~lL~~-~~~v~~~al~~L~---~l~~~~~~~~~~~~~~-~~~~~l~--~l~~ll~~~~~~vr~~A~~~L~~l~~~~ 152 (552)
+.+.-++.. +...|.+|+.+++ ++...++.....+... .+.+..+ .+.++.+++++..|..++.|+..+...+
T Consensus 184 ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 184 EKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKS 263 (678)
T ss_pred hhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcc
Confidence 999999987 7899999999999 7777776665443322 2344444 4567999999999999999999998866
Q ss_pred CCcc----hhhhhHHhHHHHHH-----HhcCCCCchhchH-HHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC----
Q 008827 153 PCYL----QDVGIKTKLINNLL-----ELLDDPGRVGDEA-SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS---- 218 (552)
Q Consensus 153 ~~~~----~~~~~~~g~i~~Lv-----~ll~~~~~v~~~a-~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~---- 218 (552)
.++. -..+...| -..++ .++.++......+ +.....++.--+..+...++...++.+.+++....
T Consensus 264 ~~~d~l~~~~~~~dmg-d~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a 342 (678)
T KOG1293|consen 264 FNYDPLPWWFIFFDMG-DSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAA 342 (678)
T ss_pred ccccccccceeeccCc-hHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhh
Confidence 2210 00011111 11111 1222332222222 22222333333344555666666666666554331
Q ss_pred CChhhHHHHH---HHHHHhhcC-ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcH
Q 008827 219 LHPRRFEGIL---LALADMCSK-LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV 294 (552)
Q Consensus 219 ~~~~~~~~a~---~aL~~l~~~-~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i 294 (552)
..++.+.-++ .....++.. .-..++.+.+......+.......+..++.+||.++.+++++...++.. +....++
T Consensus 343 ~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~ 421 (678)
T KOG1293|consen 343 SDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVA 421 (678)
T ss_pred cchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhH
Confidence 1122222111 111222221 1234455555555555555556788999999999999999999999988 8889999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHH
Q 008827 295 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF 374 (552)
Q Consensus 295 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~ 374 (552)
.+|++++.+++..++..+.++|+|++.++++.+..++..|+|+.+.+++.+.++.+|.+++|+|.++.++.+.+.+....
T Consensus 422 ~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~ 501 (678)
T KOG1293|consen 422 QPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL 501 (678)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877888888
Q ss_pred HhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827 375 MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454 (552)
Q Consensus 375 ~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~ 454 (552)
...+...+..+..++++.||++++.++||+.++..+.++++++.-+.++......+.-++...+-.....-+.++..+..
T Consensus 502 ~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d 581 (678)
T KOG1293|consen 502 AKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLD 581 (678)
T ss_pred HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchh
Confidence 88889999999999999999999999999999999999999988654444433334433444455555555556665555
Q ss_pred hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhh
Q 008827 455 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV 526 (552)
Q Consensus 455 ~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll 526 (552)
-+....+++.+++--.+.-....+...+.....+.++.|.+.|+.|..+++. ..+..+...++.++..++-
T Consensus 582 ~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s~s~-~dr~~~~~n~i~e~~~k~~ 652 (678)
T KOG1293|consen 582 TQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDSSSN-FDRSNLKLNCIWELNNKLW 652 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCCcc-cchhhccccceechhhhcc
Confidence 4555555433221111110111123345667899999999999999755443 3444455556666666553
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=3.9e-21 Score=199.75 Aligned_cols=502 Identities=16% Similarity=0.173 Sum_probs=358.0
Q ss_pred HHHHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhcC---CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhh
Q 008827 11 VDAGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLNN---ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL 86 (552)
Q Consensus 11 ~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~---~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL 86 (552)
...+...+..++..|+.- +.++ ++..+..|.+.|+. .+.++......++.+++...++-..+....+-..-+.++
T Consensus 139 k~~~~~~il~La~~~~NL-~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~m~ii 217 (708)
T PF05804_consen 139 KIRGTSLILQLARNPENL-EELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLCMEII 217 (708)
T ss_pred HHHHHHHHHHHhCCcchH-HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHHHHHH
Confidence 445567788888888777 5665 56678999999963 455667777888888887666655555443333334444
Q ss_pred cCCH---HHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827 87 GGSL---IQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT 163 (552)
Q Consensus 87 ~~~~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~ 163 (552)
.... .....-+......+...+...+.+ ......+-.+++..+.-.| .+...|.|++.... ....++..
T Consensus 218 e~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~-----~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~--ve~kM~~~ 289 (708)
T PF05804_consen 218 EHELKRHDLWQEELRKKKKAAEEKPEAKKDY-----EKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPR--VELKMVNK 289 (708)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhhhhH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChH--HHHHHHhc
Confidence 3211 111111222222222222221111 1123334445555555555 77888999998653 34557789
Q ss_pred hHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH
Q 008827 164 KLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242 (552)
Q Consensus 164 g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~ 242 (552)
|+++.|+++|+ ++.++...+...|.+|+...+ ++..+.+.|.+++|++++...+ ...+..+++.|.||+. +++.|
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~~--~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSEN--EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhCc-CHHHH
Confidence 99999999998 456778888899999986554 5788899999999999998764 7789999999999985 67889
Q ss_pred HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 008827 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVV 321 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~ 321 (552)
..+++.|++|.++.+|++++ .+..+..+|.++|.. +..+.. |...+++|.+++++- .+++++...+.+.+.|++.
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~d-d~~r~~-f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMD-DEARSM-FAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccC-HhhHHH-HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 99999999999999998654 456688999999987 334444 777889999999764 5677888888999999997
Q ss_pred CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-CChhHHHHHHHH
Q 008827 322 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQALAL 400 (552)
Q Consensus 322 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-~~~~v~~~a~~~ 400 (552)
+. .+.+.+.+.|+++.|++..-.....+ .+..+.|++.+.++ .+..+. ..+..|+.++.. ++++....++++
T Consensus 442 ~~-rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~-~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGi 514 (708)
T PF05804_consen 442 NK-RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP-LKELFV--DFIGDLAKIVSSGDSEEFVVECLGI 514 (708)
T ss_pred CH-HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch-HHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 54 55678888899999997765433222 34578888876532 443332 245556666654 577899999999
Q ss_pred HHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 008827 401 VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 479 (552)
Q Consensus 401 L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l 479 (552)
|+|+...+.+ ...++++.+ +++++...|... ..+++...+...++.++.. +.....+.. .|+++.|+.+
T Consensus 515 LaNL~~~~ld-~~~ll~~~~-llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~-------sgli~~Li~L 584 (708)
T PF05804_consen 515 LANLTIPDLD-WAQLLQEYN-LLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAK-------SGLIPTLIEL 584 (708)
T ss_pred HHhcccCCcC-HHHHHHhCC-HHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHh-------CChHHHHHHH
Confidence 9999876543 444555433 899999999652 3457888899999998863 333444443 8999999999
Q ss_pred hcC--CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827 480 LQS--NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 550 (552)
Q Consensus 480 L~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~ 550 (552)
|++ .|.+.....+++..++.+ .+.+ +..-+.+.++...|+.+++|.++++|+-+-.+|..+.+++++
T Consensus 585 L~~kqeDdE~VlQil~~f~~ll~--h~~t--r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 585 LNAKQEDDEIVLQILYVFYQLLF--HEET--REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE 653 (708)
T ss_pred HHhhCchHHHHHHHHHHHHHHHc--ChHH--HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence 986 467888999999999996 2223 223345678899999999999999999999999999888654
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=2.1e-20 Score=194.36 Aligned_cols=394 Identities=15% Similarity=0.138 Sum_probs=306.4
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHH
Q 008827 5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTS 84 (552)
Q Consensus 5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~ 84 (552)
..+..+++.|...|.+++.-+... ..+.+.+.++.|+++|.+++..+...+.+.|.+++-..+++..+.+.|++++|.+
T Consensus 260 ~kQeqLlrv~~~lLlNLAed~~ve-~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 260 RKQEQLLRVAFYLLLNLAEDPRVE-LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence 345678889999999998776666 6677889999999999988899999999999999999999999999999999999
Q ss_pred hhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827 85 LLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT 163 (552)
Q Consensus 85 lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~ 163 (552)
++.+ +..++..+++.|.+|++++.. + ..++..
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~~~-R----------------------------------------------~~mV~~ 371 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDPEL-R----------------------------------------------SQMVSL 371 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCHHH-H----------------------------------------------HHHHHC
Confidence 9997 567888999999998876432 2 234556
Q ss_pred hHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827 164 KLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS 243 (552)
Q Consensus 164 g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~ 243 (552)
|++|.|+.+|.++ ..+..+..+|.+++.++ ..+..+...+++|.+++++...+ ++.+....+..+.+++. ++.+.+
T Consensus 372 GlIPkLv~LL~d~-~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~-~~rnaq 447 (708)
T PF05804_consen 372 GLIPKLVELLKDP-NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENS-EEEVQLELIALLINLAL-NKRNAQ 447 (708)
T ss_pred CCcHHHHHHhCCC-chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhc-CHHHHH
Confidence 7777777777642 34445666666666544 34555666788999999876653 35555566777888886 456667
Q ss_pred HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcC
Q 008827 244 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVD 322 (552)
Q Consensus 244 ~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~ 322 (552)
.+.+.|+++.|++..-.....+ ..++++|+|.+.+..... | .+++.+|+.++.. ++++...++.++|+|+...
T Consensus 448 lm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~-f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 448 LMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKEL-F--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred HHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHH-H--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 8888889999988765433222 346899999986454433 3 3688888888864 5789999999999999976
Q ss_pred CchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHH
Q 008827 323 FTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQAL 398 (552)
Q Consensus 323 ~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~ 398 (552)
..++.+.+.+.+.+|.+..+|..+ .+++...++..++.++. ++.+...+.+.|.++.++.+++ ..|.++..|.+
T Consensus 522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil 599 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQIL 599 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHH
Confidence 656666666789999999999764 46789999999999986 5678888889999999999997 46788999999
Q ss_pred HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHH
Q 008827 399 ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVM 461 (552)
Q Consensus 399 ~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~ 461 (552)
.++..+..+.+ ..+.++++.+ +...+..++++ +|++|+..|-.+|.-++..+++....|-
T Consensus 600 ~~f~~ll~h~~-tr~~ll~~~~-~~~ylidL~~d-~N~~ir~~~d~~Ldii~e~d~~w~~ri~ 659 (708)
T PF05804_consen 600 YVFYQLLFHEE-TREVLLKETE-IPAYLIDLMHD-KNAEIRKVCDNALDIIAEYDEEWAERIR 659 (708)
T ss_pred HHHHHHHcChH-HHHHHHhccc-hHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCHHHHHHhh
Confidence 99999998743 5667766654 67888888888 9999999988888888876665544443
No 12
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.78 E-value=4.1e-16 Score=146.78 Aligned_cols=448 Identities=13% Similarity=0.063 Sum_probs=302.6
Q ss_pred hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHh----cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhh
Q 008827 38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD----AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS 112 (552)
Q Consensus 38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~----~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~ 112 (552)
-....+.....+..+......+++..++++..|..+.+ .|.++.|.+...+ +..+...+.++|+++|+++.+.+.
T Consensus 44 ek~~~~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~ 123 (604)
T KOG4500|consen 44 EKIQASGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRA 123 (604)
T ss_pred HHHHhcceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHH
Confidence 34455555667788888889999998877666655544 4566666666666 468899999999999999988887
Q ss_pred hhccccCCccHHHHHHH-Hh-cCChhhHH--HHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCC--chhchHHH
Q 008827 113 QFVGPDTGRTLSCIIEI-VK-DRFARTRL--LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPG--RVGDEASF 185 (552)
Q Consensus 113 ~~~~~~~~~~l~~l~~l-l~-~~~~~vr~--~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~--~v~~~a~~ 185 (552)
.+.++.....+..+++- .. +.....+. .+...|.|....+. ..+.+....|+++.|..++. +.. ...+....
T Consensus 124 a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~-~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~ 202 (604)
T KOG4500|consen 124 AFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR-ELRAQVADAGVLNTLAITYWIDWQNAALTEKLLA 202 (604)
T ss_pred HHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH-HHHHHHHhcccHHHHHHHhhcccccHHHHHHHHh
Confidence 77765333334344432 22 22223333 45566666655443 34667888999999999997 222 22223222
Q ss_pred HHHHhhcCCHH-HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC-CC-
Q 008827 186 AFSSLIAEKED-MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DS- 262 (552)
Q Consensus 186 ~L~~l~~~~~~-~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~-~~- 262 (552)
...++.+-..+ ......++.....++++|... ..++.++-++..++..+. ++.++-.+.+.|.+..++++++. .+
T Consensus 203 ~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~-v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~ 280 (604)
T KOG4500|consen 203 PFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM-VREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDF 280 (604)
T ss_pred ccccHHHHHHHhhhhhhccchHHHHHHHHHHHh-hccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccc
Confidence 23333321111 122344566677888877766 457788999999999875 56777888899999988888864 11
Q ss_pred ------HHHHHHHHHHHHHhhcccccccchhhhccC-cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827 263 ------SDVRSAACMCLRSVSRSIKNLSAGSFMNET-IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 335 (552)
Q Consensus 263 ------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~-~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~ 335 (552)
...-..++....-+....+... . +...+ ++..++.++.+.|...+..+.-+++|+++....++ .+++.|.
T Consensus 281 t~k~d~~~l~k~~~el~vllltGDeSMq-~-L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~ 357 (604)
T KOG4500|consen 281 TKKTDMLNLFKRIAELDVLLLTGDESMQ-K-LHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICI-QLVQKDF 357 (604)
T ss_pred cchHHHHHHHHhhhhHhhhhhcCchHHH-H-HhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHH-HHHHHHH
Confidence 1223334444443433322211 2 34444 89999999999999999999999999998766555 7888999
Q ss_pred HHHHHHhhcC-----CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 336 VKLLVQLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 336 i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
+..|++.+.. +|..++..++.||.|+.... .+|..+...|..+.++..+....|.++..-++.++-+..+.+.
T Consensus 358 ~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~ 435 (604)
T KOG4500|consen 358 LNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY 435 (604)
T ss_pred HHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH
Confidence 9999988754 46778888999999998733 4788899999999999999999999999999999998877542
Q ss_pred hHHHHHhhcCchHHHHHHHhcccCch-hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHH
Q 008827 411 SVEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT 489 (552)
Q Consensus 411 ~~~~i~~~~~~~~~~l~~~L~~~~~~-~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~ 489 (552)
....+.... ..++.|+.+=.+ ++. .+--.+...+.-+...+. ..+-+.. +| ..|++..+|.++.+.+-..+.
T Consensus 436 ~a~eL~kn~-~l~ekLv~Wsks-~D~aGv~gESnRll~~lIkHs~-~kdv~~t--vp--ksg~ik~~Vsm~t~~hi~mqn 508 (604)
T KOG4500|consen 436 IACELAKNP-ELFEKLVDWSKS-PDFAGVAGESNRLLLGLIKHSK-YKDVILT--VP--KSGGIKEKVSMFTKNHINMQN 508 (604)
T ss_pred HHHHHhcCH-HHHHHHHHhhhC-CccchhhhhhhHHHHHHHHhhH-hhhhHhh--cc--ccccHHHHHHHHHHhhHHHhH
Confidence 222222211 156666665555 443 365566666666655422 1221221 11 267789999999999999999
Q ss_pred HHHHHHHhhcC
Q 008827 490 AAVWAVLNLTC 500 (552)
Q Consensus 490 ~a~~~l~~l~~ 500 (552)
+|..++.-+..
T Consensus 509 EalVal~~~~~ 519 (604)
T KOG4500|consen 509 EALVALLSTES 519 (604)
T ss_pred HHHHHHHHHHH
Confidence 99888877764
No 13
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.2e-17 Score=161.69 Aligned_cols=439 Identities=15% Similarity=0.139 Sum_probs=277.6
Q ss_pred CchHHHHHhhcC----CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827 77 GVLKRLTSLLGG----SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS 152 (552)
Q Consensus 77 g~i~~L~~lL~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~ 152 (552)
.++..+.++|++ +..+|.++...+.++-. .++. ..++-.++.-.++.+..+|..|...|.|-.+..
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdf---------nnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~ 79 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPDF---------NNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH 79 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccch---------hceeeEEEecccccchhHHHHhhhhHhcccccc
Confidence 355667777874 35789999988888543 3343 334444555567888888999999888866544
Q ss_pred CCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHH
Q 008827 153 PCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL 231 (552)
Q Consensus 153 ~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL 231 (552)
........... +-...++-+. .++-+|......++.+++...-. . -..++|.|+++|.+++ ....+.|+.||
T Consensus 80 ~~~~~~~~~~y-iKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~-~---wpelLp~L~~~L~s~d--~n~~EgA~~AL 152 (885)
T KOG2023|consen 80 YNSIPSEVLDY-IKSECLHGLGDASPLIRATVGIVITTIASTGGLQ-H---WPELLPQLCELLDSPD--YNTCEGAFGAL 152 (885)
T ss_pred ccCCChHHHHH-HHHHHHhhccCchHHHHhhhhheeeeeecccccc-c---chhHHHHHHHHhcCCc--ccccchhHHHH
Confidence 32222211111 1122233333 33445655555555555433211 1 1456899999888764 66889999999
Q ss_pred HHhhcCChhHHHHHHhc----ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHH
Q 008827 232 ADMCSKLECCRSRCLSL----QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 307 (552)
Q Consensus 232 ~~l~~~~~~~~~~~~~~----~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 307 (552)
..+|.+..+.-+.-.-. -.+|.++++.+++++.+|..|..|+-.+.-...+. -+..-..+++.++.+-.|++++
T Consensus 153 ~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 153 QKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred HHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHccCCCHH
Confidence 99998765443321111 27999999999999999999999987764331111 1123357788899988999999
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh--hcHHHHHhh
Q 008827 308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLASL 385 (552)
Q Consensus 308 v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~--~~~~~l~~l 385 (552)
||+..|.++..|....++ |-.-.=.++++.++...++.++.|...|+.....++.. |.++..+... ..+|.|++-
T Consensus 231 VRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq--pi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ--PICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred HHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC--cCcHHHHHHHHHHHHHHHHcc
Confidence 999999999999864333 21112247888888889999999999999999888873 3344433321 245555544
Q ss_pred hcCCCh-------------------hHHHH-----------------------------HHHHHHHhhcCCcchHHHHHh
Q 008827 386 ICDPEP-------------------SVQEQ-----------------------------ALALVRNLVDGRINSVEYIFA 417 (552)
Q Consensus 386 l~~~~~-------------------~v~~~-----------------------------a~~~L~~l~~~~~~~~~~i~~ 417 (552)
+.-++. +++-. .-|-||..+...-+....++.
T Consensus 308 M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~ 387 (885)
T KOG2023|consen 308 MVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG 387 (885)
T ss_pred CccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH
Confidence 321110 00000 001122211111111112222
Q ss_pred hc--CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHH
Q 008827 418 ED--GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 495 (552)
Q Consensus 418 ~~--~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l 495 (552)
+. ..+++++-..|.+ ..+.+++++..+++.+|.|+-+. ++. +-..++|+++.+|.+..+-||..+||+|
T Consensus 388 ~elL~~l~PlLk~~L~~-~~W~vrEagvLAlGAIAEGcM~g---~~p-----~LpeLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 388 DELLPILLPLLKEHLSS-EEWKVREAGVLALGAIAEGCMQG---FVP-----HLPELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred HHHHHHHHHHHHHHcCc-chhhhhhhhHHHHHHHHHHHhhh---ccc-----chHHHHHHHHHHhccCccceeeeeeeeH
Confidence 22 0145666666666 88999999999999999986433 332 1246889999999999999999999999
Q ss_pred HhhcC-CCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh-cCCC
Q 008827 496 LNLTC-SSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF-DDSL 551 (552)
Q Consensus 496 ~~l~~-~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~-~~~~ 551 (552)
++++. ...+. +.+.+. -++..|.+.+-|++++|+|+|+.|+..+.+- +++|
T Consensus 459 sRys~wv~~~~---~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eL 511 (885)
T KOG2023|consen 459 SRYSKWVVQDS---RDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEEL 511 (885)
T ss_pred hhhhhhHhcCC---hHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchh
Confidence 99973 11112 222221 1245555555688999999999999988775 3444
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.75 E-value=1.1e-15 Score=155.64 Aligned_cols=399 Identities=15% Similarity=0.159 Sum_probs=283.6
Q ss_pred cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhh-HHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhh
Q 008827 34 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV 111 (552)
Q Consensus 34 ~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~ 111 (552)
+...+|..++.|.+.++.+|-.|+..+.++|..++. |..+.+.|+|+.|+.+|.+ ...|+.+|+.+|.+|.+......
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 334678899999999999999999999999987765 7788999999999999998 78999999999999998765522
Q ss_pred hhhccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-------C--------
Q 008827 112 SQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-------D-------- 175 (552)
Q Consensus 112 ~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-------~-------- 175 (552)
+.+. +...++++.++++++. .|.++|......|+||+..+. .+..+....++.|-...- +
T Consensus 311 NKla-i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~---lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 311 NKLA-IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA---LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred cchh-hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH---HHHHHHHHHHHHHHHhhcccccccCCCCcccccc
Confidence 2221 1236789999999985 899999999999999998732 333444556777655541 1
Q ss_pred CCchhchHHHHHHHhhcCCHHHHHHHHHh-CcHHHHHHhhhc----CCCChhhHHHHHHHHHHhhcCCh-----hHHHHH
Q 008827 176 PGRVGDEASFAFSSLIAEKEDMQKLAFEV-NGVDKLYNHLQK----GSLHPRRFEGILLALADMCSKLE-----CCRSRC 245 (552)
Q Consensus 176 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~----~~~~~~~~~~a~~aL~~l~~~~~-----~~~~~~ 245 (552)
+.++-..++++|.|+.+...+.++.+.++ |.|..|+..++. ...+.+..++++..+.++.-.-+ ..+...
T Consensus 387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~ 466 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVL 466 (717)
T ss_pred cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence 12456789999999999888888888875 557888876663 23456678999999999864211 111111
Q ss_pred HhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc--------------hhhhccCcHHHHHHhhc-CCCHHHHH
Q 008827 246 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA--------------GSFMNETIVIPLVRLLD-DTSTAVQV 310 (552)
Q Consensus 246 ~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~--------------~~~~~~~~i~~Lv~lL~-~~~~~v~~ 310 (552)
...+. ....+.+. ...+|+..-.+.....+. ..+....++.+-..+|. +.++.+.+
T Consensus 467 ~~~~~------~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlE 537 (717)
T KOG1048|consen 467 ANIAR------LPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLE 537 (717)
T ss_pred hcccc------cccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHH
Confidence 11110 00011111 223333333222111000 00223345555555565 56889999
Q ss_pred HHHHHHHHhhcCCchhH----HHH-HhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh
Q 008827 311 AALGAISNIVVDFTTRR----STF-IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL 385 (552)
Q Consensus 311 ~a~~aL~nl~~~~~~~~----~~~-~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l 385 (552)
+++++|-|++.+..... ..+ ....+++.+++++..+++.+...++.+|.||+.+ +.+| +++...+++-|++.
T Consensus 538 asaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk-~ligk~a~~~lv~~ 614 (717)
T KOG1048|consen 538 ASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNK-ELIGKYAIPDLVRC 614 (717)
T ss_pred HhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhh-hhhhcchHHHHHHh
Confidence 99999999998765433 233 5678999999999999999999999999999873 3344 44557889999999
Q ss_pred hcCC------ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827 386 ICDP------EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 450 (552)
Q Consensus 386 l~~~------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la 450 (552)
|.+. ++++...++.+|.|+...+......+++.+| ++.|+-+..+..+++..+.+...|..|=
T Consensus 615 Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g--~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 615 LPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG--IPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred CcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC--hHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 9643 3678889999999999888888888998886 5777666666456677777777776654
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=3.6e-16 Score=159.08 Aligned_cols=363 Identities=17% Similarity=0.115 Sum_probs=272.3
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHH--H
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKED--M 197 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~--~ 197 (552)
-.++..+.++.+.++.+|..|+..+..++..+. ..+..+.+.|+|+.|+.+|+ ...+|+..|+++|.||..+... +
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~-~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDN-KIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhH-HHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 357788999999999999999999999987554 35667888999999999999 5578999999999999976655 6
Q ss_pred HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHh-cC-------------CCCH
Q 008827 198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LA-------------HDSS 263 (552)
Q Consensus 198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~-L~-------------~~~~ 263 (552)
+-.+.+++|++.+++.|+.. -|.++++.+...|+||++. +.++..++... ++.+..- +. ....
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSSN-DALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred chhhhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccch-hHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccc
Confidence 66788999999999999876 3578999999999999875 55665555432 2222221 11 1135
Q ss_pred HHHHHHHHHHHHhhcccccccchhhh-ccCcHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCCc------------
Q 008827 264 DVRSAACMCLRSVSRSIKNLSAGSFM-NETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFT------------ 324 (552)
Q Consensus 264 ~v~~~a~~~L~~ls~~~~~~~~~~~~-~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~------------ 324 (552)
.+-..+..||+|++.....-|+. +. .+|.|..|+..++ +.|..-.++|+..+.|+.....
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~-mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQ-MRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred eeeehhhhhhccccchhHHHHHH-HhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 78899999999998865666655 54 4789999999886 3466778899999988865322
Q ss_pred -------------------hhHHH----------------------HHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q 008827 325 -------------------TRRST----------------------FIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLI 362 (552)
Q Consensus 325 -------------------~~~~~----------------------~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~ 362 (552)
..+++ +....++.....++. +.+..+.++++.+|-|++
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT 547 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence 00111 001124444344444 457889999999999998
Q ss_pred ccCCh---HhHHHH-HHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc---
Q 008827 363 FLAED---KCKEEI-FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK--- 435 (552)
Q Consensus 363 ~~~~~---~~~~~i-~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~--- 435 (552)
-+..+ ..+..+ ..+.+.++|+++++.++..+...+..+|+|++.+. ..+.++... +++-|++.|.++..
T Consensus 548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~ligk~--a~~~lv~~Lp~~~~~~~ 623 (717)
T KOG1048|consen 548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIGKY--AIPDLVRCLPGSGPSTS 623 (717)
T ss_pred ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhhcc--hHHHHHHhCcCCCCCcC
Confidence 64332 234444 67889999999999999999999999999999764 344555533 78889888876433
Q ss_pred --hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCC-hhHHHHHHHHHHhhc
Q 008827 436 --AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND-SRLRTAAVWAVLNLT 499 (552)
Q Consensus 436 --~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~-~~~~~~a~~~l~~l~ 499 (552)
+++...+|++|.|+...+...-..+++ .+.++.|+.+.++.. +.+-++|...+..|.
T Consensus 624 ~sedtv~~vc~tl~niv~~~~~nAkdl~~-------~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 624 LSEDTVRAVCHTLNNIVRKNVLNAKDLLE-------IKGIPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred chHHHHHHHHHhHHHHHHHhHHHHHHHHh-------ccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 788899999999999766655666665 677899999988754 477788888887776
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.1e-15 Score=150.85 Aligned_cols=480 Identities=15% Similarity=0.162 Sum_probs=284.6
Q ss_pred ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHH---HHh--cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCCh
Q 008827 35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKL---LFD--AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP 108 (552)
Q Consensus 35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~---l~~--~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~ 108 (552)
++.+|.|..+|.+++...++-|.+.|.++|....+.-. ..+ .-.+|.++++.++ ++++|..|+.|+-.+.....
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 67899999999999999999999999999977654221 111 2357888888887 78999999999987654332
Q ss_pred h-hhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHH
Q 008827 109 E-VVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFA 186 (552)
Q Consensus 109 ~-~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~ 186 (552)
. .-..+ ...+..++.+.+|++++||..-...|..+....+++... --.++++.++..-++ +..|..+|+.-
T Consensus 207 qal~~~i-----D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p--hl~~IveyML~~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 207 QALYVHI-----DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP--HLDNIVEYMLQRTQDVDENVALEACEF 279 (885)
T ss_pred HHHHHHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc--chHHHHHHHHHHccCcchhHHHHHHHH
Confidence 2 21122 356777888999999999999999999888765432111 114677777776664 34577777766
Q ss_pred HHHhhcCCHHHHHHHHH--hCcHHHHHH----------------------------------------------------
Q 008827 187 FSSLIAEKEDMQKLAFE--VNGVDKLYN---------------------------------------------------- 212 (552)
Q Consensus 187 L~~l~~~~~~~~~~~~~--~~~i~~L~~---------------------------------------------------- 212 (552)
...++... -++..... ...+|.|++
T Consensus 280 wla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 280 WLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence 65555432 11111110 122333322
Q ss_pred --------------------------------------hhhcC--CCChhhHHHHHHHHHHhhcCChhHHHHHHhc--cc
Q 008827 213 --------------------------------------HLQKG--SLHPRRFEGILLALADMCSKLECCRSRCLSL--QV 250 (552)
Q Consensus 213 --------------------------------------~L~~~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~--~~ 250 (552)
+|+.. +.+..+||+++.+++.++. .+-+-++.. .+
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE---GcM~g~~p~LpeL 435 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE---GCMQGFVPHLPEL 435 (885)
T ss_pred ccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH---HHhhhcccchHHH
Confidence 11110 0112356777777777763 333333332 27
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 330 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 330 (552)
+|.++++|.+..+-||.-+||+|...+...-+..+. -.-..++..+++.+-|++..||++|+.|++.+-.+-.+.--..
T Consensus 436 ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 436 IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHH
Confidence 889999999999999999999999997653222221 1222444555555558899999999999987765433211011
Q ss_pred HhhCcHHHHHHhh---cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHH---hhhcCCC--------------
Q 008827 331 IRLGGVKLLVQLS---KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA---SLICDPE-------------- 390 (552)
Q Consensus 331 ~~~g~i~~L~~ll---~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~---~ll~~~~-------------- 390 (552)
. .-++..|+... +..|-.+-.-|+++|+.=+.+. -++...++- .+|.|+ .++.++|
T Consensus 515 l-~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~--Ln~~~Yiqi-LmPPLi~KW~~lsd~DKdLfPLLEClSsia 590 (885)
T KOG2023|consen 515 L-EYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHA--LNKPAYIQI-LMPPLIEKWELLSDSDKDLFPLLECLSSIA 590 (885)
T ss_pred H-HHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHh--cCcHHHHHH-hccHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 1 11222222222 1234444555666666544311 122222222 122222 1233332
Q ss_pred -----------hhHHHHHHHHHHHh-------------------------------hcCCcchHHHHHhhcCchHHHHHH
Q 008827 391 -----------PSVQEQALALVRNL-------------------------------VDGRINSVEYIFAEDGIILDAVGR 428 (552)
Q Consensus 391 -----------~~v~~~a~~~L~~l-------------------------------~~~~~~~~~~i~~~~~~~~~~l~~ 428 (552)
+.+-+.+++++.+. +.+-..+++.++...+ ++.++..
T Consensus 591 ~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~sn-l~~lll~ 669 (885)
T KOG2023|consen 591 SALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSN-LLDLLLQ 669 (885)
T ss_pred HHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhcc-HHHHHHH
Confidence 23444455444432 2222222222222222 5566666
Q ss_pred HhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHH
Q 008827 429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSG 508 (552)
Q Consensus 429 ~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 508 (552)
-+++ +-++||.++...|+.++..+..+...-+ .++++.+-..+...+..+..+|+|+++.++......+..
T Consensus 670 C~~D-~~peVRQS~FALLGDltk~c~~~v~p~~--------~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~ 740 (885)
T KOG2023|consen 670 CLQD-EVPEVRQSAFALLGDLTKACFEHVIPNL--------ADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQ 740 (885)
T ss_pred Hhcc-CChHHHHHHHHHHHHHHHHHHHhccchH--------HHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhh
Confidence 6666 7899999999999999986655544444 467777777787788889999999999999633222332
Q ss_pred HHHHHHHCCcHHHHHhhhcCCC--ccHHHHHHHHHHHHh
Q 008827 509 RLVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQFN 545 (552)
Q Consensus 509 ~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~al~~~~ 545 (552)
... .++..|..+++.++ ..+-|..+..++++.
T Consensus 741 ~v~-----~vl~~L~~iin~~~~~~tllENtAITIGrLg 774 (885)
T KOG2023|consen 741 YVS-----PVLEDLITIINRQNTPKTLLENTAITIGRLG 774 (885)
T ss_pred HHH-----HHHHHHHHHhcccCchHHHHHhhhhhhhhhh
Confidence 222 23566666655332 346666666666553
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.9e-15 Score=138.15 Aligned_cols=304 Identities=16% Similarity=0.190 Sum_probs=246.6
Q ss_pred hhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc
Q 008827 179 VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL 258 (552)
Q Consensus 179 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L 258 (552)
+..++..+|..+....|. .+++.++..++.+|.....+.++-...+..+..-|-.+|.+|+.+.+.+++|.+.+.|
T Consensus 123 ~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l 198 (461)
T KOG4199|consen 123 VLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVL 198 (461)
T ss_pred HHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Confidence 566777888777766655 5688999999999987766677777888888888888999999999999999999777
Q ss_pred C-CCCHHHHHHHHHHHHHhhcccccccch---------hhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhH
Q 008827 259 A-HDSSDVRSAACMCLRSVSRSIKNLSAG---------SFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRR 327 (552)
Q Consensus 259 ~-~~~~~v~~~a~~~L~~ls~~~~~~~~~---------~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~ 327 (552)
. ++..++.+..+++++.|... +++|.. .|...|++..|+..++. -+|.+...++.+|..++... +..
T Consensus 199 ~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~-E~C 276 (461)
T KOG4199|consen 199 NREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD-EIC 276 (461)
T ss_pred cccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-HHH
Confidence 6 45557889999999999765 333321 15677889999999973 47899999999999999654 455
Q ss_pred HHHHhhCcHHHHHHhhcCCC-HHHH---HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHH
Q 008827 328 STFIRLGGVKLLVQLSKSMD-STIR---LNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALV 401 (552)
Q Consensus 328 ~~~~~~g~i~~L~~ll~~~~-~~v~---~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L 401 (552)
+.+.+.|++..+++.+.+.+ ...| ..++..|..++.+. +.|..+++.|+.+.++.++. ++||.|.++++.++
T Consensus 277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D--svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i 354 (461)
T KOG4199|consen 277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD--SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAII 354 (461)
T ss_pred HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC--chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHH
Confidence 68999999999999999854 3334 56788888888744 48999999999999999874 67899999999999
Q ss_pred HHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc-hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 008827 402 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 480 (552)
Q Consensus 402 ~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~-~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL 480 (552)
.-++...|++...+++.| .-...++-|.-+|. ..++.++||.+.|++..+..++..++. .| +..|+..-
T Consensus 355 ~~l~LR~pdhsa~~ie~G--~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-------~G-iE~Li~~A 424 (461)
T KOG4199|consen 355 SILCLRSPDHSAKAIEAG--AADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-------NG-IEKLIRTA 424 (461)
T ss_pred HHHHhcCcchHHHHHhcc--hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-------cc-HHHHHHHH
Confidence 999999999999999887 44566666665464 569999999999999988878887775 44 58888888
Q ss_pred cCCChhHHHHHHHHHHhhcC
Q 008827 481 QSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 481 ~~~~~~~~~~a~~~l~~l~~ 500 (552)
++.++..+..|-.+|..|.+
T Consensus 425 ~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 425 KANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HhcCccHHHHHHHHHHhcCc
Confidence 88899999999999998875
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.73 E-value=2.7e-14 Score=151.19 Aligned_cols=462 Identities=18% Similarity=0.202 Sum_probs=312.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhh
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL 86 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL 86 (552)
+..-...+++-|..++...... ..+.+.++.++.+++...+..+.-.+..+...+.....+ ++..+.+-|
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl 88 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDI------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDL 88 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCC------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhh
Confidence 3344445555555554443222 156788888998888888888888888877655543322 445566667
Q ss_pred cC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhH
Q 008827 87 GG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKL 165 (552)
Q Consensus 87 ~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~ 165 (552)
.+ ++.+|..|++++++++ +++.. ...++.+.+++.|+++.||..|+.++..+....++. +... .
T Consensus 89 ~~~n~~~~~lAL~~l~~i~--~~~~~--------~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~-~ 153 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR--TPEMA--------EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----VEDE-L 153 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH---SHHHH--------HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGG-H
T ss_pred cCCCHHHHHHHHhhhhhhc--ccchh--------hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----HHHH-H
Confidence 66 6789999999999987 34443 234677889999999999999999999999875542 2223 7
Q ss_pred HHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHH
Q 008827 166 INNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSR 244 (552)
Q Consensus 166 i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 244 (552)
++.+.+++.+ ++.|+..|..++..+ ..++.... -.-...++.|.+++.. .+|-.+..+++.+..++..++.....
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~--~~~~~q~~il~~l~~~~~~~~~~~~~ 229 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSD--PDPWLQIKILRLLRRYAPMEPEDADK 229 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTC--CSHHHHHHHHHHHTTSTSSSHHHHHH
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccc--cchHHHHHHHHHHHhcccCChhhhhH
Confidence 9999999984 467888888888888 33333211 0111223344443333 35778889999999988765544321
Q ss_pred HHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 008827 245 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT 324 (552)
Q Consensus 245 ~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 324 (552)
...++.+..++++.++.|...++.++..+..... ....++++|.+++.+++++++..++.+|..++....
T Consensus 230 ---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 230 ---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred ---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 4578899999999999999999999998876522 234678999999999999999999999999987552
Q ss_pred hhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh-cCCChhHHHHHHHHHHH
Q 008827 325 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRN 403 (552)
Q Consensus 325 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll-~~~~~~v~~~a~~~L~~ 403 (552)
..+. .....+..+..+++..+|..++..|.+++. +.+-.. .++.+...+ ..++++++..++..++.
T Consensus 300 ----~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 300 ----PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGD 366 (526)
T ss_dssp ----HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred ----hhhh-hhhhhhheecCCCChhHHHHHHHHHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 2222 333334344458899999999999999975 223333 455666777 45688899999999999
Q ss_pred hhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-
Q 008827 404 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS- 482 (552)
Q Consensus 404 l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~- 482 (552)
++...+...++ .++.+.+++.. .++.+...+...+.++....+..+..+ +..+++.+.+
T Consensus 367 la~~~~~~~~~-------~v~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~~~~~~~------------l~~L~~~l~~~ 426 (526)
T PF01602_consen 367 LAEKFPPDAEW-------YVDTLLKLLEI-SGDYVSNEIINVIRDLLSNNPELREKI------------LKKLIELLEDI 426 (526)
T ss_dssp HHHHHGSSHHH-------HHHHHHHHHHC-TGGGCHCHHHHHHHHHHHHSTTTHHHH------------HHHHHHHHTSS
T ss_pred HHhccCchHHH-------HHHHHHHhhhh-ccccccchHHHHHHHHhhcChhhhHHH------------HHHHHHHHHHh
Confidence 98654443333 46677777776 666777778888888776555444433 4577887776
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 483 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
.++.++..++|+++.++.... .+. ... ..+..+.+...+.++.+|-.+..++..+...
T Consensus 427 ~~~~~~~~~~wilGEy~~~~~-~~~-~~~-----~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 427 SSPEALAAAIWILGEYGELIE-NTE-SAP-----DILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp SSHHHHHHHHHHHHHHCHHHT-TTT-HHH-----HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhcccCCccc-ccc-cHH-----HHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 677899999999999984111 100 111 1233344443444566777776766665543
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.8e-14 Score=147.59 Aligned_cols=423 Identities=14% Similarity=0.107 Sum_probs=281.9
Q ss_pred cCCCCcchHHHHHHHHhhcCChhhHHHHHhcCc---hHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCc
Q 008827 46 NNESENVSGLGASIISHSCKTSLEQKLLFDAGV---LKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGR 121 (552)
Q Consensus 46 ~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~---i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 121 (552)
+.+.++++...+.+++.++++.- -+ +| ++.|++..++ ++..|+.|+..|..+...-.+. ..+
T Consensus 90 ~E~~~~vr~k~~dviAeia~~~l-----~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~--------~~~ 155 (1075)
T KOG2171|consen 90 SETEPSVRHKLADVIAEIARNDL-----PE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT--------LQP 155 (1075)
T ss_pred hccchHHHHHHHHHHHHHHHhcc-----cc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc--------cch
Confidence 34567889999999988875422 22 33 3444555555 5789999999999976432222 123
Q ss_pred cHHHHHH----HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-----CCchhchHHHHHHHhhc
Q 008827 122 TLSCIIE----IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-----PGRVGDEASFAFSSLIA 192 (552)
Q Consensus 122 ~l~~l~~----ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-----~~~v~~~a~~~L~~l~~ 192 (552)
.++.+.. -+.+.+..||..|++++..++...+........-...+|.++..+.+ +.+.-..+..+|..++.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 3333333 44566666999999999999886642111112224578878777762 23345677788888887
Q ss_pred CCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh--cccHHHHHHhcCCCC--------
Q 008827 193 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAHDS-------- 262 (552)
Q Consensus 193 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~lv~~L~~~~-------- 262 (552)
..+.+-+.... ..+..-..+..+...+..+|..|+..|..++..-+...+.... ...++.++.++.+..
T Consensus 236 ~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 236 SEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 77765443332 2345555555665567789999999999988764443332222 236777777775311
Q ss_pred --------HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhC
Q 008827 263 --------SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334 (552)
Q Consensus 263 --------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g 334 (552)
..-...|..+|-.++.+.+. . .+-..+++.+-.+++++++.-|.+|..+|+.++.++.+.....+ ..
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g---~-~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~ 389 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGG---K-QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PK 389 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCCh---h-hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HH
Confidence 12456677788888776321 1 23344556666677899999999999999999998876544322 36
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-CChhHHHHHHHHHHHhhcCCcc-hH
Q 008827 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQALALVRNLVDGRIN-SV 412 (552)
Q Consensus 335 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-~~ 412 (552)
+++..+..+.++++.||..|+.+++.++.+-.|+..+. .++..++.|+..+++ .++.++..|..++-|++...+. .+
T Consensus 390 Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 390 ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 78888899999999999999999999988766654433 344567778888876 4568999999999999876543 22
Q ss_pred HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCC----hhHH
Q 008827 413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND----SRLR 488 (552)
Q Consensus 413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~----~~~~ 488 (552)
...+.. +++.....|..++++.+++.+..+|+..|........... ..++|.|..+|+..+ ..+|
T Consensus 469 ~pYLd~---lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~--------d~~Mp~L~~~L~n~~~~d~r~Lr 537 (1075)
T KOG2171|consen 469 EPYLDG---LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF--------DRLMPLLKNFLQNADDKDLRELR 537 (1075)
T ss_pred HHHHHH---HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH--------HHHHHHHHHHHhCCCchhhHHHH
Confidence 333322 5664444444448999999999999999975443344444 356688888888755 3466
Q ss_pred HHHHHHHHhhcC
Q 008827 489 TAAVWAVLNLTC 500 (552)
Q Consensus 489 ~~a~~~l~~l~~ 500 (552)
-....+++-++.
T Consensus 538 gktmEcisli~~ 549 (1075)
T KOG2171|consen 538 GKTMECLSLIAR 549 (1075)
T ss_pred hhHHHHHHHHHH
Confidence 666666666653
No 20
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.72 E-value=2e-14 Score=142.72 Aligned_cols=483 Identities=16% Similarity=0.083 Sum_probs=320.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCc--chHHHHHHHHh-hcCChhhHHHHHhcCc
Q 008827 2 PLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESEN--VSGLGASIISH-SCKTSLEQKLLFDAGV 78 (552)
Q Consensus 2 ~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~--~~~~a~~~l~~-~~~~~~~~~~l~~~g~ 78 (552)
||...++..+..+.....++..+...+|+..++-++++.+..+++..++. .+...+.++-. .++.......+.+.+.
T Consensus 17 ~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ 96 (678)
T KOG1293|consen 17 RLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE 96 (678)
T ss_pred hhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence 56677888888999999999999888877788999999999999865544 44333333333 4556666788899999
Q ss_pred hHHHHHhhcC-C-HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcc
Q 008827 79 LKRLTSLLGG-S-LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL 156 (552)
Q Consensus 79 i~~L~~lL~~-~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~ 156 (552)
.+.|+++|.. + ..+++..++++..+.+.++....... ....+
T Consensus 97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s-----~~~~s------------------------------- 140 (678)
T KOG1293|consen 97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMS-----LHLKS------------------------------- 140 (678)
T ss_pred HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchh-----hhHHH-------------------------------
Confidence 9999999986 4 68999999999998766544321110 00011
Q ss_pred hhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHH---
Q 008827 157 QDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALA--- 232 (552)
Q Consensus 157 ~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~--- 232 (552)
+++.+..++. +...+..--+ .+...++..+..+....++|..+++.-++... +...|.+|+..+.
T Consensus 141 --------Ii~~~s~l~s~~lk~~~~l~~-~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~--s~~~RlaaL~~~sr~~ 209 (678)
T KOG1293|consen 141 --------IIVKFSLLYSIELKYISRLDV-SRAAHLSSTKDHQLILCNAGILEKINILLMYL--SSKLRLAALLCLSRGD 209 (678)
T ss_pred --------HHHHHHHHHhhhhhhhhhhhh-hhhccccccchhhheeccccchhhHHHHHHhh--hHHHHHHHHHHhhccc
Confidence 1111111111 0000000000 11112223334555666777777766555443 3678999999999
Q ss_pred HhhcCChhHHH----HHHhcccHH--HHHHhcCCCCHHHHHHHHHHHHHhhcccccc----cchhhhccC--cH--HHHH
Q 008827 233 DMCSKLECCRS----RCLSLQVLK--LVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMNET--IV--IPLV 298 (552)
Q Consensus 233 ~l~~~~~~~~~----~~~~~~~l~--~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~----~~~~~~~~~--~i--~~Lv 298 (552)
.+..+++.... ...+.|+.+ .+.+++++++...+..++.++..+-+...+. ...++.+.| .+ -...
T Consensus 210 ~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i 289 (678)
T KOG1293|consen 210 RILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCI 289 (678)
T ss_pred eeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhh
Confidence 66655554432 233456666 5667778889888999999988886543111 011123333 11 1233
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC------CCHHHHHHHH---HHHHHhcccCChHh
Q 008827 299 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS------MDSTIRLNAL---RALRNLIFLAEDKC 369 (552)
Q Consensus 299 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~---~aL~~l~~~~~~~~ 369 (552)
.++.++.......++...+.++...+......++...++...+++.. ..++.|.-++ ..+..++++.+...
T Consensus 290 ~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~ 369 (678)
T KOG1293|consen 290 VLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISL 369 (678)
T ss_pred eeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhH
Confidence 34456655555666666666665445555567777777777777543 3444444333 34445566555667
Q ss_pred HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc---CchHHHHHHHhcccCchhHHHHHHHHH
Q 008827 370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED---GIILDAVGRQLRIASKAEIEIQGMYVL 446 (552)
Q Consensus 370 ~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~---~~~~~~l~~~L~~~~~~~v~~~a~~~L 446 (552)
++++.+......+..+....|......++-.+.++...- +.+..| .-+.+.+++++.. |...|+..++++|
T Consensus 370 ~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV-----~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai 443 (678)
T KOG1293|consen 370 KKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSV-----SALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAI 443 (678)
T ss_pred HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHH-----HHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHH
Confidence 889999888888888888899999999998888876431 111111 0167888888866 8889999999999
Q ss_pred HhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhh
Q 008827 447 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV 526 (552)
Q Consensus 447 ~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll 526 (552)
.|+.-.....+..+++ .|++..+..++.+.++.+|..+.|+|.++.++.+ .+....+...=.-..|..+.
T Consensus 444 ~NlVmefs~~kskfl~-------~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d---e~~k~~~~~ki~a~~i~~l~ 513 (678)
T KOG1293|consen 444 CNLVMEFSNLKSKFLR-------NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD---EEEKFQLLAKIPANLILDLI 513 (678)
T ss_pred HHHHhhcccHHHHHHH-------cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch---HHHHHHHHHHhhHHHHHHHH
Confidence 9999877777888887 7999999999999999999999999999998532 22233333222335677788
Q ss_pred cCCCccHHHHHHHHHHHHhhh
Q 008827 527 NDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 527 ~~~~~~v~~~a~~al~~~~~~ 547 (552)
+|++..|+|.+-.-++++.+-
T Consensus 514 nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 514 NDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999888888764
No 21
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1e-13 Score=146.36 Aligned_cols=469 Identities=15% Similarity=0.126 Sum_probs=312.5
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827 39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVG 116 (552)
Q Consensus 39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~ 116 (552)
..|+.-|-++|-.++..|-+.+.+...... ..+.|..++.+ ++.+|.-|+.-+++++.. .+..+-.
T Consensus 7 ~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~---~w~~l~~ 74 (1075)
T KOG2171|consen 7 EQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTK---HWSRLSA 74 (1075)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH---HhhcCCH
Confidence 344555556788889999998888765332 67788888875 578999888888888753 3333321
Q ss_pred ccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCC
Q 008827 117 PDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEK 194 (552)
Q Consensus 117 ~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~ 194 (552)
......-..++. ..+...+.+|..-+..+..+++..- +. -+.+.++.|.+..+ .++..|+.|..+|+.+...-
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l----~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~ 149 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDL----PE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETF 149 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----cc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhh
Confidence 111233444555 4457888999999999999988542 22 56788888888887 45778999999999887532
Q ss_pred HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh---hHHHHHHhcccHHHHHHh----cCCCCHHHHH
Q 008827 195 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE---CCRSRCLSLQVLKLVVDA----LAHDSSDVRS 267 (552)
Q Consensus 195 ~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~~l~~lv~~----L~~~~~~v~~ 267 (552)
.+... -+-....+.+.+.+.+++ ++ +|-.++++++..+...+ ..+..+. ..+|.++.. +..++...-.
T Consensus 150 ~~~~~-~~~~~l~~lf~q~~~d~s-~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 150 GNTLQ-PHLDDLLRLFSQTMTDPS-SP-VRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred ccccc-hhHHHHHHHHHHhccCCc-ch-HHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHH
Confidence 22111 011122345555666654 34 99999999998877543 2222222 245555544 4567777778
Q ss_pred HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHHH--HhhCcHHHHHHhh
Q 008827 268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTF--IRLGGVKLLVQLS 343 (552)
Q Consensus 268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~--~~~g~i~~L~~ll 343 (552)
.+..+|..+....+.+-+. .-..++...+++..+ -+..+|..|...|..++..-+...+.. .-...++.++.++
T Consensus 225 ~~l~~l~El~e~~pk~l~~--~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m 302 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLLRP--HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM 302 (1075)
T ss_pred HHHHHHHHHHhhchHHHHH--HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence 8888888888775544333 223455556666654 478999999999998886532222111 2223555555554
Q ss_pred cCC--C--------------HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 344 KSM--D--------------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 344 ~~~--~--------------~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
... + ..-...|..++-.++.+-+++ .+-.-.++.+-.++.++++..+..++.+|+.+..|
T Consensus 303 te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~----~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG 378 (1075)
T KOG2171|consen 303 TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK----QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG 378 (1075)
T ss_pred CCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh----hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 331 0 113445666666666654431 11223466777888999999999999999999999
Q ss_pred CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-Chh
Q 008827 408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSR 486 (552)
Q Consensus 408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~ 486 (552)
..+.+...+.. +++.+...|++ ++|.||..|+.+++.+++......+.-.. .-+.+.|+..+.+. ++.
T Consensus 379 c~~~m~~~l~~---Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~-------e~l~~aL~~~ld~~~~~r 447 (1075)
T KOG2171|consen 379 CSDVMIGNLPK---ILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHH-------ERLPPALIALLDSTQNVR 447 (1075)
T ss_pred cHHHHHHHHHH---HHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHH-------HhccHHHHHHhcccCchH
Confidence 87766655544 78999999998 99999999999999999865544444332 34556788888775 679
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHH-HHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827 487 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS-HVKNMVNDPCLDVKLRVKTALEQFNSFDDS 550 (552)
Q Consensus 487 ~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~-~L~~ll~~~~~~v~~~a~~al~~~~~~~~~ 550 (552)
++..|+.++-|+... ...+..... -.+.++ .+..+.+++++.+++.|..||...++.+++
T Consensus 448 V~ahAa~al~nf~E~---~~~~~l~pY-Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEE---CDKSILEPY-LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHHHHHHHHHHHHHh---CcHHHHHHH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999852 233333332 223444 444466788999999999999998887653
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.70 E-value=2.9e-13 Score=139.94 Aligned_cols=394 Identities=14% Similarity=0.156 Sum_probs=282.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHh
Q 008827 126 IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEV 204 (552)
Q Consensus 126 l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 204 (552)
++..+++.+.+.-..++.+|..+..... ......+..+.|...|. .++.|+..++..+.+++.++......+.+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~----~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS----PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 6666776666666777777887766432 11225678888888888 457899999999999998888777777788
Q ss_pred CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827 205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 284 (552)
Q Consensus 205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~ 284 (552)
+.++.++.++.+++ ..+...|..+|..++...+. ...+.+.++++.+..++...+..+|..+..++.+++...+...
T Consensus 119 ~l~~~i~~~L~~~d--~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 119 ELLPLIIQCLRDPD--LSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred cHHHHHHHHHcCCc--HHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999998764 78899999999999976544 4567788889999999999899999999999999987755555
Q ss_pred chhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC--CH---HHHH-HHHHHH
Q 008827 285 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DS---TIRL-NALRAL 358 (552)
Q Consensus 285 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~---~v~~-~a~~aL 358 (552)
.. ..+.|+++.++..++++|.-++.+|+..|..++. .+...+.+.+.|+++.|..++.+. ++ .+.. ..+...
T Consensus 196 ~~-~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 196 EA-VVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HH-HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 44 6788999999999999999999999999999997 667788899999999999998764 22 1222 233566
Q ss_pred HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH-HhhcCc---hHHHHHHHhcccC
Q 008827 359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI-FAEDGI---ILDAVGRQLRIAS 434 (552)
Q Consensus 359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~~~~---~~~~l~~~L~~~~ 434 (552)
++++...++...... ...+..+.+++.+.|+..+..|+.+++.++.+. +....+ ...++. ++..+.....+ +
T Consensus 274 g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~-~ 349 (503)
T PF10508_consen 274 GNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKS-G 349 (503)
T ss_pred HHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcC-C
Confidence 677664332221111 234566778888999999999999999998653 334444 333321 33333333344 6
Q ss_pred chhHHHHHHHHHHhhcCCChh-hHH---HHHHHhhHhhhhhhHH-HHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHH
Q 008827 435 KAEIEIQGMYVLGNVATGKES-HKE---AVMDQLLLRAENKAQS-CIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR 509 (552)
Q Consensus 435 ~~~v~~~a~~~L~~la~~~~~-~~~---~i~~~~~~~~~~~~v~-~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 509 (552)
..+++..++.+++++....+. ..+ .+.+..+.....+-.. .++.+++.+-+++|.++...+..++. ...-.
T Consensus 350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~----~~Wg~ 425 (503)
T PF10508_consen 350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA----QPWGQ 425 (503)
T ss_pred chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc----CHHHH
Confidence 678999999999999542221 111 2222211111223333 78889999999999999999999994 22223
Q ss_pred HHHHHHCCcHHHHHhhhcCCCccHHHH
Q 008827 510 LVKLHDAGIVSHVKNMVNDPCLDVKLR 536 (552)
Q Consensus 510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~ 536 (552)
..-....|.++.|..--.+.+++.++.
T Consensus 426 ~~i~~~~gfie~lldr~~E~~K~~ke~ 452 (503)
T PF10508_consen 426 REICSSPGFIEYLLDRSTETTKEGKEA 452 (503)
T ss_pred HHHHhCccHHhhhcCCCCCCCHHHHHH
Confidence 333345566677776655566666654
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.1e-14 Score=131.33 Aligned_cols=313 Identities=19% Similarity=0.206 Sum_probs=236.9
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhc--CCCCcchHHHHHHHHhhcCChh-hHHHHHhcCchHH
Q 008827 5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLN--NESENVSGLGASIISHSCKTSL-EQKLLFDAGVLKR 81 (552)
Q Consensus 5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~--~~~~~~~~~a~~~l~~~~~~~~-~~~~l~~~g~i~~ 81 (552)
+++..+...++.+|..+. ... +++++..++..++.+|. .++.++-......+.+.|-..+ +|..+.+.++.+.
T Consensus 118 ~~~~~~l~ksL~al~~lt---~~q-pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L 193 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLT---HKQ-PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL 193 (461)
T ss_pred CCchhHHHHHHHHHHHhh---cCC-cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 445555555555555443 333 79999999999999997 3556788888888888776544 5888899999999
Q ss_pred HHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhh
Q 008827 82 LTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV 159 (552)
Q Consensus 82 L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~ 159 (552)
+.+.|.+ ..++-....++++.|..+++-.. .+ + .. .+| ...
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV-~f-----g-----------------------------~a-h~h-Ar~ 236 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRV-VF-----G-----------------------------QA-HGH-ART 236 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceee-ec-----c-----------------------------hh-hHH-HHH
Confidence 9988874 23344445677777766543221 11 1 00 012 234
Q ss_pred hhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhH---HHHHHHHHHh
Q 008827 160 GIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF---EGILLALADM 234 (552)
Q Consensus 160 ~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~---~~a~~aL~~l 234 (552)
+...|++..|++.++ -++++....+.+|..++..++.+ +.+.+.||+..|++++.+++ +...| ..++..|..+
T Consensus 237 ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C-~~I~e~GGl~tl~~~i~d~n-~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 237 IAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEIC-KSIAESGGLDTLLRCIDDSN-EQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHH-HHHHHccCHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHH
Confidence 667788999999998 35788889999999999777654 67899999999999998864 33344 5677888888
Q ss_pred hcCChhHHHHHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CC-CHHHHH
Q 008827 235 CSKLECCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DT-STAVQV 310 (552)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~-~~~v~~ 310 (552)
+. +++++..+++.|+.+.++.++. .++|.|...++.++..++-..+..... +++.|+-...++.|+ +| ...+|.
T Consensus 315 AG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~-~ie~G~a~~avqAmkahP~~a~vQr 392 (461)
T KOG4199|consen 315 AG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAK-AIEAGAADLAVQAMKAHPVAAQVQR 392 (461)
T ss_pred hC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHH-HHhcchHHHHHHHHHhCcHHHHHHH
Confidence 86 5688999999999999999885 568899999999999998665555555 899999999999997 44 568999
Q ss_pred HHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827 311 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363 (552)
Q Consensus 311 ~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 363 (552)
+|++.+.|++.....++..++ ..+++.|+...+..++..+..+-.+|..+..
T Consensus 393 nac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 393 NACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 999999999987777775555 5778999999888888888888888888854
No 24
>PRK09687 putative lyase; Provisional
Probab=99.70 E-value=5.9e-15 Score=139.99 Aligned_cols=255 Identities=16% Similarity=0.136 Sum_probs=201.4
Q ss_pred CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827 205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 284 (552)
Q Consensus 205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~ 284 (552)
-.++.|...|.+.+ ..+|..++++|..+.. + ..++.+..+++++++.+|..++++|+.+......
T Consensus 23 ~~~~~L~~~L~d~d--~~vR~~A~~aL~~~~~--~---------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN--SLKRISSIRVLQLRGG--Q---------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred ccHHHHHHHHhCCC--HHHHHHHHHHHHhcCc--c---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 34678888887764 7899999999988752 2 2578888999999999999999999998653110
Q ss_pred chhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827 285 AGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363 (552)
Q Consensus 285 ~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 363 (552)
....++.|..+ ++++++.|+..|+.+|+++....... ...+++.+...+.+++..||..++++|+.+..
T Consensus 88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 12456788877 67899999999999999986432211 12356677788889999999999999987732
Q ss_pred cCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHH
Q 008827 364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM 443 (552)
Q Consensus 364 ~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~ 443 (552)
...++.|+.++.++++.|+..|+.+|+++..+++. +++.|...|.+ +++.|+..++
T Consensus 158 ------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~-----------~~~~L~~~L~D-~~~~VR~~A~ 213 (280)
T PRK09687 158 ------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD-----------IREAFVAMLQD-KNEEIRIEAI 213 (280)
T ss_pred ------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHhcC-CChHHHHHHH
Confidence 12688999999999999999999999999544432 67778888877 8999999999
Q ss_pred HHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHH
Q 008827 444 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVK 523 (552)
Q Consensus 444 ~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~ 523 (552)
++|+.+-. ..+++.|++.|++++ ++..++.+|+++.. ..+++.|.
T Consensus 214 ~aLg~~~~------------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~---------------~~a~p~L~ 258 (280)
T PRK09687 214 IGLALRKD------------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD---------------KTLLPVLD 258 (280)
T ss_pred HHHHccCC------------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---------------HhHHHHHH
Confidence 99998642 234588999999876 67889999999883 13588999
Q ss_pred hhhc-CCCccHHHHHHHHHHH
Q 008827 524 NMVN-DPCLDVKLRVKTALEQ 543 (552)
Q Consensus 524 ~ll~-~~~~~v~~~a~~al~~ 543 (552)
++++ ++++.++.++.+||..
T Consensus 259 ~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 259 TLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHhhCCChhHHHHHHHHHhc
Confidence 9985 7889999999999875
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.69 E-value=4.7e-14 Score=149.34 Aligned_cols=466 Identities=16% Similarity=0.167 Sum_probs=322.3
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT 83 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~ 83 (552)
.+.+....+-+--++..+...+ + +.. .-.+..+.+=|+++++.++..|..++++++ .++.-. -.++.+.
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~--~--~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~-----~l~~~v~ 120 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHED--P--ELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAE-----PLIPDVI 120 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTS--H--HHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHH-----HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcc--h--hHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhh-----HHHHHHH
Confidence 3566666666666666664332 2 211 135677778888899999999999999998 333221 2467788
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH
Q 008827 84 SLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK 162 (552)
Q Consensus 84 ~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 162 (552)
+++.+ ++.||.+|+.++..+...+++.... . .++.+..+++|.++.++..|..++..+ +..+.... ...
T Consensus 121 ~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~------~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~--~~~ 190 (526)
T PF01602_consen 121 KLLSDPSPYVRKKAALALLKIYRKDPDLVED------E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK--SLI 190 (526)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG------G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT--THH
T ss_pred HHhcCCchHHHHHHHHHHHHHhccCHHHHHH------H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh--hhH
Confidence 88886 7899999999999998777665321 2 478888999999999999999999998 22111000 223
Q ss_pred HhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827 163 TKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 241 (552)
Q Consensus 163 ~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~ 241 (552)
...++.|.+++.. ++..+..+...+..++..++..... ...++.+..++.+.+ +.+...+..++..+.... .
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~--~~V~~e~~~~i~~l~~~~-~- 263 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSS--PSVVYEAIRLIIKLSPSP-E- 263 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSSSH-H-
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccc--cHHHHHHHHHHHHhhcch-H-
Confidence 4566666666664 4566888899999988877665321 345677888777653 778889999999887533 2
Q ss_pred HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q 008827 242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIV 320 (552)
Q Consensus 242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~ 320 (552)
.-..+++.+..++.++++.+|..++..|..++.... . .+. . ....+..+. +++..++..+...|..++
T Consensus 264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~----~-~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP----P-AVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH----H-HHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc----h-hhh-h-hhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 233578999999999999999999999999987631 1 222 2 223334444 889999999999999998
Q ss_pred cCCchhHHHHHhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHH
Q 008827 321 VDFTTRRSTFIRLGGVKLLVQLS-KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALA 399 (552)
Q Consensus 321 ~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~ 399 (552)
.. .+.. .+++.|...+ ..+++.++..++.+++.++....+ .. .-.++.+++++...+..+...+..
T Consensus 333 ~~--~n~~-----~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-~~-----~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 333 NE--SNVK-----EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-DA-----EWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp -H--HHHH-----HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-SH-----HHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred cc--cchh-----hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-hH-----HHHHHHHHHhhhhccccccchHHH
Confidence 52 2222 2678888888 455888999999999998753221 11 124678888998888888888888
Q ss_pred HHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 008827 400 LVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 479 (552)
Q Consensus 400 ~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l 479 (552)
.+.++....++.... ++..+...+.+..+++++..++|++|..+...+. .. .. ..++..+...
T Consensus 400 ~i~~ll~~~~~~~~~-------~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~--------~~~~~~l~~~ 462 (526)
T PF01602_consen 400 VIRDLLSNNPELREK-------ILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SA--------PDILRSLIEN 462 (526)
T ss_dssp HHHHHHHHSTTTHHH-------HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HH--------HHHHHHHHHH
T ss_pred HHHHHhhcChhhhHH-------HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cH--------HHHHHHHHHh
Confidence 888888766654443 3556667777657788999999999998763322 00 11 2344566777
Q ss_pred hcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc--CCCccHHHHHHHHHHHHh
Q 008827 480 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFN 545 (552)
Q Consensus 480 L~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~al~~~~ 545 (552)
....+..+|.....++..+.... ...+... .+++.+.++.+ +.+++||+||.+.+.-+.
T Consensus 463 ~~~~~~~vk~~ilt~~~Kl~~~~--~~~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 463 FIEESPEVKLQILTALAKLFKRN--PENEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHS--CSTTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHhhC--CchhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 77777889999999999887521 1111111 23556666766 779999999998877654
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.69 E-value=1.2e-13 Score=142.90 Aligned_cols=404 Identities=13% Similarity=0.110 Sum_probs=281.6
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 008827 39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 117 (552)
Q Consensus 39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 117 (552)
+.++..|++.+++....++.+|..+-+....... ..+..+.|...|.+ ++.||..++..++++...++.....+.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~-- 116 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV-- 116 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc--
Confidence 4477888877777778888888888764433332 45567888888887 789999999999998877766544443
Q ss_pred cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHH
Q 008827 118 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKED 196 (552)
Q Consensus 118 ~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~ 196 (552)
+.+.++.++..+.+++..+...|..+|..++.+... .+.++..+.++.|.+++.. ++.+|..+..++.++++.+++
T Consensus 117 -~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~--~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 117 -DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG--LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred -CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh--HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence 467889999999999999999999999999986543 3456677779999999986 667899999999999999999
Q ss_pred HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC--CH---H-HHHHHH
Q 008827 197 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SS---D-VRSAAC 270 (552)
Q Consensus 197 ~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~--~~---~-v~~~a~ 270 (552)
....+.+.|.++.+++.|.+. |.-++.+++..|..++. .+.....+.+.|+++.+..++.+. ++ . ..-...
T Consensus 194 ~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 888888999999999988884 57889999999999998 667778889999999999999743 22 1 122333
Q ss_pred HHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH-HhhC-----cHHHHHHhhc
Q 008827 271 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF-IRLG-----GVKLLVQLSK 344 (552)
Q Consensus 271 ~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-~~~g-----~i~~L~~ll~ 344 (552)
...++++...+. ... -.-..++..+..++++.|+..+..|..+++.++. ....+..+ ...| .+..+....+
T Consensus 271 ~f~g~la~~~~~-~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~ 347 (503)
T PF10508_consen 271 KFFGNLARVSPQ-EVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIK 347 (503)
T ss_pred HHHHHHHhcChH-HHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 566666663111 110 0113455666777788999999999999999985 45666555 3322 4555556666
Q ss_pred CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 008827 345 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD 424 (552)
Q Consensus 345 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~ 424 (552)
++..++|..++.++.++.....+....++. . ......+...+.+ ...
T Consensus 348 ~~~~~lk~r~l~al~~il~~~~~~~~~~i~--------------------~-~~~~w~~~~~~~~------------~~~ 394 (503)
T PF10508_consen 348 SGSTELKLRALHALASILTSGTDRQDNDIL--------------------S-ITESWYESLSGSP------------LSN 394 (503)
T ss_pred CCchHHHHHHHHHHHHHHhcCCCCchHHHH--------------------H-HHHHHHHHhcCCc------------hHH
Confidence 778889999999999985432211111111 0 0111111111111 111
Q ss_pred HHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChh---HHHHHHHHHH
Q 008827 425 AVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR---LRTAAVWAVL 496 (552)
Q Consensus 425 ~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~---~~~~a~~~l~ 496 (552)
.+..+++. |=++++..+...|..++.... ....+... .|++..++.--.+.+.+ .|...+.+|.
T Consensus 395 ~l~~~~~q-PF~elr~a~~~~l~~l~~~~W-g~~~i~~~------~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 395 LLMSLLKQ-PFPELRCAAYRLLQALAAQPW-GQREICSS------PGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHHHHhcC-CchHHHHHHHHHHHHHhcCHH-HHHHHHhC------ccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 55555655 778999999999999998654 45556652 56655555443334433 3444444444
No 27
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=8.5e-16 Score=148.27 Aligned_cols=275 Identities=22% Similarity=0.312 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHh
Q 008827 263 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 342 (552)
Q Consensus 263 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~l 342 (552)
..-..+++.+|.+++++...+|+. +.+..+.++|+++|++|+..+..-+..+++|.+..+++.+..+++.|.+..++.+
T Consensus 403 ~l~~~a~~l~LkS~SrSV~~LRTg-L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 403 DLDFVAIVLFLKSMSRSVTFLRTG-LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhh-ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence 344567889999999999889988 9999999999999999988888999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc---hHHHHHhhc
Q 008827 343 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN---SVEYIFAED 419 (552)
Q Consensus 343 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~ 419 (552)
+.+.+..+|.+..|.+.++.++.+.+.+-+.+...+++.++.+.++++..+|.+++.+|+|++++... ..+..+...
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~ 561 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT 561 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence 99999999999999999999988777888999999999999999999999999999999999875322 111111111
Q ss_pred C--chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc----------------
Q 008827 420 G--IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ---------------- 481 (552)
Q Consensus 420 ~--~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~---------------- 481 (552)
. .++..+...++. .+|--....+++|.++++.+...++.++++ .+.+..+...|.
T Consensus 562 p~~ylfk~l~~k~e~-~np~~i~~~~yilv~~aa~d~~l~~~V~~q------~~~L~~i~eil~e~a~r~~L~pg~~~~~ 634 (743)
T COG5369 562 PRRYLFKRLIDKYEE-NNPMEILEGCYILVRNAACDDTLDYIVQSQ------EDMLDSIFEILDEFAGRTPLSPGSKEEH 634 (743)
T ss_pred hHHHHHHHHHHHHHh-cCchhhhhhHHHHHHHHhccchHHHHHHhH------HHHHHHHHHHHHHHcccCCCCCCCCccc
Confidence 0 156777788887 777767777999999988666556655542 333222222111
Q ss_pred -------------------------------------CCChhHHHHHHHHHHhhcCCCCC-----CCHHHHHHHHHCCcH
Q 008827 482 -------------------------------------SNDSRLRTAAVWAVLNLTCSSSP-----GSSGRLVKLHDAGIV 519 (552)
Q Consensus 482 -------------------------------------~~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~l~~~g~~ 519 (552)
++|.+.-.+..|.+.|+.|+.++ .+.|+.+.+.+.|.-
T Consensus 635 v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~ 714 (743)
T COG5369 635 VLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIR 714 (743)
T ss_pred ccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHH
Confidence 02344667888999998886542 234899999999999
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827 520 SHVKNMVNDPCLDVKLRVKTALEQFN 545 (552)
Q Consensus 520 ~~L~~ll~~~~~~v~~~a~~al~~~~ 545 (552)
+.++++..+++++|||++..||.++.
T Consensus 715 e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 715 EWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 99999999999999999999999874
No 28
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=1.6e-14 Score=153.23 Aligned_cols=377 Identities=17% Similarity=0.137 Sum_probs=260.5
Q ss_pred HHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--C--CCchhchHHHHHHHhhcCCHHHHHHHHH
Q 008827 128 EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--D--PGRVGDEASFAFSSLIAEKEDMQKLAFE 203 (552)
Q Consensus 128 ~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 203 (552)
.++.-.....+..-++.|..++.....+ -.++..|++|.|++++- + +.+.+..|-.+|.|+.-..++..+.-.+
T Consensus 201 sllsml~t~D~ee~ar~fLemSss~esC--aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE 278 (2195)
T KOG2122|consen 201 SLLSMLGTDDEEEMARTFLEMSSSPESC--AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRRE 278 (2195)
T ss_pred HHhhhcccCCHHHHHHHHHHhccCchhh--HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHH
Confidence 3444444444555556666676655443 34778999999999997 2 3467889999999998777765443333
Q ss_pred hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHH-HHHHHHHHhhccccc
Q 008827 204 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS-AACMCLRSVSRSIKN 282 (552)
Q Consensus 204 ~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~-~a~~~L~~ls~~~~~ 282 (552)
...++.|-+ ++.++..+...+-...+ -.-+...+-+. +|..+|..++.. +.
T Consensus 279 ~kvL~lLeQ----------IraYC~~~~~~lqar~~-----------------~~apa~~~H~lcaA~~~lMK~SFD-EE 330 (2195)
T KOG2122|consen 279 KKVLHLLEQ----------IRAYCETCWTWLQARGP-----------------AIAPASDEHQLCAALCTLMKLSFD-EE 330 (2195)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHhcCC-----------------CCCCcccchhhHHHHHHHHHhhcc-HH
Confidence 222222211 11111111111100000 00001111122 333344444444 33
Q ss_pred ccchhhhccCcHHHHHHhhc------------CCCHHHHHHHHHHHHHhhcCCchhHHHHH-hhCcHHHHHHhhcCCCHH
Q 008827 283 LSAGSFMNETIVIPLVRLLD------------DTSTAVQVAALGAISNIVVDFTTRRSTFI-RLGGVKLLVQLSKSMDST 349 (552)
Q Consensus 283 ~~~~~~~~~~~i~~Lv~lL~------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~ 349 (552)
.|.. +.+-|+++.+-.|+. ..+..+|.+|..+|.||+.+...+|..+. ..|.+..++..|.+..++
T Consensus 331 hR~a-M~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pee 409 (2195)
T KOG2122|consen 331 HRHA-MNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEE 409 (2195)
T ss_pred HHHH-HHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHH
Confidence 3333 444455444444432 01457999999999999998887776654 469999999999999889
Q ss_pred HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH
Q 008827 350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428 (552)
Q Consensus 350 v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~ 428 (552)
+.......|.||.-..+...|+.+-+.|.+..|... ++..........+.+||||..++.++...+..-+| ++..|+.
T Consensus 410 L~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDG-ALaFLVg 488 (2195)
T KOG2122|consen 410 LLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDG-ALAFLVG 488 (2195)
T ss_pred HHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccc-hHHHHHh
Confidence 988889999999866666677777788888777765 45566677888999999999887777667766655 7888988
Q ss_pred Hhccc---CchhHHHHHHHHHHhhcC---CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCC
Q 008827 429 QLRIA---SKAEIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSS 502 (552)
Q Consensus 429 ~L~~~---~~~~v~~~a~~~L~~la~---~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~ 502 (552)
+|.-. +.-.|.+.+-++|.|.+. .++++|+.... ++.+..|.+.|++....+..++|.+|.||..
T Consensus 489 ~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-------~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA-- 559 (2195)
T KOG2122|consen 489 TLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-------HNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-- 559 (2195)
T ss_pred hccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-------hhHHHHHHHHhhhcceEEeecchhhhhhhhc--
Confidence 88642 334688899999988764 56678876554 8888999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 503 SPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 503 ~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
...+..+.|.+.|+++.|..|+.+.+....+-+..||.++..+
T Consensus 560 --R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 560 --RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred --CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 5677789999999999999999988888888888999988754
No 29
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=3.6e-14 Score=134.70 Aligned_cols=257 Identities=18% Similarity=0.109 Sum_probs=198.2
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~ 198 (552)
.-.+..+..++.|++..+|..|+..|..+.. ..+++.+.++++ +++.+|..++++|+.+-.....
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 3456788999999999999999999886643 246777888887 5678999999999998542211
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 278 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~ 278 (552)
....++.|..++... +++.+|..++.+|++++...... ....++.+...+.++++.||..++.+|..+.
T Consensus 88 ----~~~a~~~L~~l~~~D-~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~- 156 (280)
T PRK09687 88 ----QDNVFNILNNLALED-KSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN- 156 (280)
T ss_pred ----hHHHHHHHHHHHhcC-CCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-
Confidence 123466777764443 46889999999999997533211 1124666778888999999999999995442
Q ss_pred ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 279 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 358 (552)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL 358 (552)
+...++.|+.+|+++++.++..|+.+|+++..+. ..+++.|+..+.+++..||..|+++|
T Consensus 157 -----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 157 -----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred -----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3357899999999999999999999999883222 24678899999999999999999999
Q ss_pred HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhH
Q 008827 359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 438 (552)
Q Consensus 359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v 438 (552)
+.+-. . ..++.|++.+.+++ ++..++.+|+++.... .++.|.+++..++++.+
T Consensus 217 g~~~~--~----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~-------------a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 217 ALRKD--K----------RVLSVLIKELKKGT--VGDLIIEAAGELGDKT-------------LLPVLDTLLYKFDDNEI 269 (280)
T ss_pred HccCC--h----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCHh-------------HHHHHHHHHhhCCChhH
Confidence 98732 1 37889999999876 6678888998886431 68888888875589999
Q ss_pred HHHHHHHHHh
Q 008827 439 EIQGMYVLGN 448 (552)
Q Consensus 439 ~~~a~~~L~~ 448 (552)
+..+.++|..
T Consensus 270 ~~~a~~a~~~ 279 (280)
T PRK09687 270 ITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHhc
Confidence 9999888753
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.63 E-value=1.8e-13 Score=151.66 Aligned_cols=276 Identities=20% Similarity=0.189 Sum_probs=211.7
Q ss_pred HhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827 163 TKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 241 (552)
Q Consensus 163 ~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~ 241 (552)
...++.|++.|. +++.||..|+.+|..+. ..+.++.|...|.++ ++.+|..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccC--
Confidence 456788888887 45788999988888763 134577888888665 47899999999888743211
Q ss_pred HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827 242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV 321 (552)
Q Consensus 242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 321 (552)
-.+.+...|+++++.||..++.+|..+... -.+.++..|.++++.+|..|+.+|+.+-
T Consensus 685 --------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~- 742 (897)
T PRK13800 685 --------PAPALRDHLGSPDPVVRAAALDVLRALRAG-------------DAALFAAALGDPDHRVRIEAVRALVSVD- 742 (897)
T ss_pred --------chHHHHHHhcCCCHHHHHHHHHHHHhhccC-------------CHHHHHHHhcCCCHHHHHHHHHHHhccc-
Confidence 135677888889999999999988776421 1246778899999999999999998642
Q ss_pred CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827 322 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV 401 (552)
Q Consensus 322 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L 401 (552)
..+.|..++.++++.+|..++.+|..+..... ...+.|..++.++++.++..|+.+|
T Consensus 743 -------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~d~~VR~aA~~aL 799 (897)
T PRK13800 743 -------------DVESVAGAATDENREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDPDPLVRAAALAAL 799 (897)
T ss_pred -------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 12446778999999999999999998854221 2367888999999999999999999
Q ss_pred HHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827 402 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 481 (552)
Q Consensus 402 ~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~ 481 (552)
+++..... +...+...|.+ +++.|+..++.+|+.+.. ...++.|+.+|+
T Consensus 800 g~~g~~~~------------~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~------------------~~a~~~L~~~L~ 848 (897)
T PRK13800 800 AELGCPPD------------DVAAATAALRA-SAWQVRQGAARALAGAAA------------------DVAVPALVEALT 848 (897)
T ss_pred HhcCCcch------------hHHHHHHHhcC-CChHHHHHHHHHHHhccc------------------cchHHHHHHHhc
Confidence 99864321 33456667777 789999999999987643 123478899999
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHH
Q 008827 482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 543 (552)
Q Consensus 482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~ 543 (552)
+++..||..|+++|..+. +.++ ..+.|.+.++|++.+||..|..||..
T Consensus 849 D~~~~VR~~A~~aL~~~~-----~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWP-----GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CCCHHHHHHHHHHHhccC-----CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999999999999999873 2221 36678889999999999999999874
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.63 E-value=2.1e-13 Score=151.00 Aligned_cols=275 Identities=18% Similarity=0.138 Sum_probs=214.6
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHH
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQK 199 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~ 199 (552)
..++.+.+.++|+++.||..|+..|..+.. ...++.|+++|++ +.+||..|+.+|..+....+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 356677889999999999999999886532 3578899999984 46899999999987753211
Q ss_pred HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827 200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 279 (552)
Q Consensus 200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~ 279 (552)
..+.|...|.++ ++.+|..++.+|..+...+ .+.++..|+++++.||..|+.+|..+..
T Consensus 685 ------~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 ------PAPALRDHLGSP--DPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred ------chHHHHHHhcCC--CHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 124566767764 5889999999998874221 3456789999999999999999876421
Q ss_pred cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827 280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359 (552)
Q Consensus 280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 359 (552)
.+.|..++.|+++++|..++.+|+.+.... ...++.|..+++++++.+|..|+.+|+
T Consensus 744 --------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg 800 (897)
T PRK13800 744 --------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALA 800 (897)
T ss_pred --------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 245778899999999999999999875422 134788999999999999999999999
Q ss_pred HhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHH
Q 008827 360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 439 (552)
Q Consensus 360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~ 439 (552)
++.... ...+.+...+.++++.|+..|+.+|+.+.... .++.|...|.+ +++.|+
T Consensus 801 ~~g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-------------a~~~L~~~L~D-~~~~VR 855 (897)
T PRK13800 801 ELGCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAADV-------------AVPALVEALTD-PHLDVR 855 (897)
T ss_pred hcCCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccccc-------------hHHHHHHHhcC-CCHHHH
Confidence 984311 12356778899999999999999999875322 57888888888 899999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHh
Q 008827 440 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 497 (552)
Q Consensus 440 ~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~ 497 (552)
..++++|+.+. +++ ...+.|...++++|..||..|..+|..
T Consensus 856 ~~A~~aL~~~~-~~~----------------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 856 KAAVLALTRWP-GDP----------------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHhccC-CCH----------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999873 222 223577888999999999999998853
No 32
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.63 E-value=1.3e-13 Score=146.41 Aligned_cols=369 Identities=14% Similarity=0.129 Sum_probs=268.1
Q ss_pred cchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCC----HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHH
Q 008827 51 NVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS----LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCI 126 (552)
Q Consensus 51 ~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l 126 (552)
..++.-+..+..++...+.=..+.+.|+++.|+++|... ...+..|-.+|.+|.+.+++..+. .-...+
T Consensus 209 ~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~-------RRE~kv 281 (2195)
T KOG2122|consen 209 DDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG-------RREKKV 281 (2195)
T ss_pred CCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh-------HHHHHH
Confidence 334555666677776777677788999999999999862 356777788999998887665321 111222
Q ss_pred HHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCch--hc-hHHHHHHHhhcCCHHHHHHHHH
Q 008827 127 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRV--GD-EASFAFSSLIAEKEDMQKLAFE 203 (552)
Q Consensus 127 ~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v--~~-~a~~~L~~l~~~~~~~~~~~~~ 203 (552)
+.++. .+|.....|-..+-..++. . -+..+ +. .|..+|.++. .+++.++.+-+
T Consensus 282 L~lLe----QIraYC~~~~~~lqar~~~-----------------~--apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~E 337 (2195)
T KOG2122|consen 282 LHLLE----QIRAYCETCWTWLQARGPA-----------------I--APASDEHQLCAALCTLMKLS-FDEEHRHAMNE 337 (2195)
T ss_pred HHHHH----HHHHHHHHHHHHHHhcCCC-----------------C--CCcccchhhHHHHHHHHHhh-ccHHHHHHHHH
Confidence 23222 1222221111111111110 0 01112 22 4445566665 45566888889
Q ss_pred hCcHHHHHHhhhcCC-------C---ChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827 204 VNGVDKLYNHLQKGS-------L---HPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSAACMC 272 (552)
Q Consensus 204 ~~~i~~L~~~L~~~~-------~---~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~~~~~v~~~a~~~ 272 (552)
.|+++.+-++|.-.. . .-.+|..+.++|.||...+..++..+. ..|++..+|..|.+...++....+.+
T Consensus 338 LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~Asv 417 (2195)
T KOG2122|consen 338 LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASV 417 (2195)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHH
Confidence 999988888664321 0 124789999999999998877766654 45899999999999999999999999
Q ss_pred HHHhhcccccccchhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh-hCcHHHHHHhhcCC----
Q 008827 273 LRSVSRSIKNLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSM---- 346 (552)
Q Consensus 273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~---- 346 (552)
|+||++.-+......+.+.|-+..|+.. |+...+....+.+.||.||+.++..+|..|.. .|++..|+.+|...
T Consensus 418 LRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~ 497 (2195)
T KOG2122|consen 418 LRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSN 497 (2195)
T ss_pred HHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcc
Confidence 9999986443333326677888888875 45566678899999999999999888877765 58999999998764
Q ss_pred CHHHHHHHHHHHHHhccc--CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 008827 347 DSTIRLNALRALRNLIFL--AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD 424 (552)
Q Consensus 347 ~~~v~~~a~~aL~~l~~~--~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~ 424 (552)
.-.+.+.+-.+|.|.... ...+.|+.+.+..-+..|++.|++.+.-+..+++++|+||...+++..++++..+ ++.
T Consensus 498 tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~g--Av~ 575 (2195)
T KOG2122|consen 498 TLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDG--AVP 575 (2195)
T ss_pred hhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcc--cHH
Confidence 345777777788876432 1235788888899999999999999999999999999999999999999999988 789
Q ss_pred HHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827 425 AVGRQLRIASKAEIEIQGMYVLGNVATGK 453 (552)
Q Consensus 425 ~l~~~L~~~~~~~v~~~a~~~L~~la~~~ 453 (552)
.|..++.+ ++..|...++.+|.|+...-
T Consensus 576 mLrnLIhS-KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 576 MLRNLIHS-KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHhh-hhhhhhhhHHHHHHHHhcCC
Confidence 99888888 88999999999999998754
No 33
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=9.6e-13 Score=132.60 Aligned_cols=498 Identities=14% Similarity=0.098 Sum_probs=287.2
Q ss_pred CCCcHHHHHHHHHHHHHHHcC--CCCCCcccccccchHHHHHhhcCCCC-cchHHHHHHHHhhcCChhhHHHHHhc-Cch
Q 008827 4 LKSYMEVVDAGARSLKMIYQS--KMAPKYDFLQEENMEFLLSLLNNESE-NVSGLGASIISHSCKTSLEQKLLFDA-GVL 79 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~--~~~~~~~~~~~~~i~~l~~ll~~~~~-~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i 79 (552)
+++-+...-.|.+|+..+... |...+ ++.++.+++-..++.+ .+++.++.+|..+|..-..+...... .++
T Consensus 100 ~~~ep~~~s~Aaq~va~IA~~ElP~n~w-----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL 174 (859)
T KOG1241|consen 100 GSPEPRRPSSAAQCVAAIACIELPQNQW-----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL 174 (859)
T ss_pred CCCCCCccchHHHHHHHHHHhhCchhhC-----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence 334444555555555555322 11111 3344555555544333 48899999999999764444222222 233
Q ss_pred HHHHHhhcC---CHHHHHHHHHHHHHHhcCCh-hhhhhhccccCCcc-HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827 80 KRLTSLLGG---SLIQRDASLESIATIFKNNP-EVVSQFVGPDTGRT-LSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154 (552)
Q Consensus 80 ~~L~~lL~~---~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~~~~-l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~ 154 (552)
-.++.-.+. +..+|.+|+.||.+=..... +..+.. ..++ +..+.+..+++|.++|.+|..||..+....-.
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~----ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEM----ERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHh----hhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 45899999999987322211 111111 1222 34456678899999999999999998775433
Q ss_pred cchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHH---------------HHH---HHhCcHHHHHHhhh
Q 008827 155 YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQ---------------KLA---FEVNGVDKLYNHLQ 215 (552)
Q Consensus 155 ~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~---------------~~~---~~~~~i~~L~~~L~ 215 (552)
+....+-+ ...+.-+.-++ ++++|...+..-=++++..+-+.. ... .-.+.+|.|+++|.
T Consensus 251 ~m~~yM~~-alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 251 FMEPYMEQ-ALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 32222222 22333333333 445554444333333322111100 000 01234577777775
Q ss_pred cCCC-------------------------------------------ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHH
Q 008827 216 KGSL-------------------------------------------HPRRFEGILLALADMCSKLECCRSRCLSLQVLK 252 (552)
Q Consensus 216 ~~~~-------------------------------------------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~ 252 (552)
..++ +.+-|+.++.+++++-...+..+..-...+++|
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 5321 123478888999988766555555555678999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-----
Q 008827 253 LVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR----- 327 (552)
Q Consensus 253 ~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~----- 327 (552)
.++.++.+++.-++..+.|+++.++...+..+.......+.++.++..|.+ .|.+-.+++|++.+|+.......
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~q 488 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQ 488 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999887654333323445666667776755 58999999999999985322110
Q ss_pred ----HHHHhhCcHHHHHHhhcC---CCHHHHHHHHHHHHHhcccCChHhHHHHHHhh--cHHHHHh-----hhcCCC---
Q 008827 328 ----STFIRLGGVKLLVQLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMEL--TASLLAS-----LICDPE--- 390 (552)
Q Consensus 328 ----~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~--~~~~l~~-----ll~~~~--- 390 (552)
..+. ..++..|++.... .....|..|-.||+.+...++.++-..+.... .+..|-+ .+...|
T Consensus 489 t~~~t~~y-~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q 567 (859)
T KOG1241|consen 489 TDPATPFY-EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQ 567 (859)
T ss_pred CCccchhH-HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHH
Confidence 0011 1244455554443 23568999999999998876654544333211 1122222 222222
Q ss_pred -hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhh
Q 008827 391 -PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE 469 (552)
Q Consensus 391 -~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~ 469 (552)
.++|...+..|.++...-...+..+-+ .++..+.+++++.++.-+.+.++.+++.++..-.......+
T Consensus 568 ~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d---~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym-------- 636 (859)
T KOG1241|consen 568 LNELQSLLCNTLQSIIRKVGSDIREVSD---QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM-------- 636 (859)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhHHH---HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--------
Confidence 245555556666655332222222222 27889999999845566888888888877763222333333
Q ss_pred hhhHHHHHHhhc-CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827 470 NKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP 529 (552)
Q Consensus 470 ~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 529 (552)
..+.|.|..-|+ -.+..|+..|+..++.++. +-+-....+-.++...|++.+.++
T Consensus 637 ~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~r-----aL~~~i~py~d~~mt~Lvq~Lss~ 692 (859)
T KOG1241|consen 637 PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLAR-----ALEDDILPYCDELMTVLVQCLSSP 692 (859)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHHHHHccCc
Confidence 356788888884 4567899999999999984 222222223344567777777643
No 34
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-12 Score=123.79 Aligned_cols=438 Identities=11% Similarity=0.032 Sum_probs=301.2
Q ss_pred CHHHHHHHHHHHHHHhcCChhhhhhhcccc-CCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHH
Q 008827 89 SLIQRDASLESIATIFKNNPEVVSQFVGPD-TGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLIN 167 (552)
Q Consensus 89 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~ 167 (552)
+..++..+-.|+...++.. .-+..+.+.+ +.+.+..+.+..++++.++.....++|+|++..+.+ .++.+...|+-.
T Consensus 55 ~~tv~~~qssC~A~~sk~e-v~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E-~R~a~~~lgGaq 132 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNE-VERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNE-NRAAFFNLGGAQ 132 (604)
T ss_pred cchhhhhhHHHHHHHhhhH-HHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCch-hHHHHHhcCCce
Confidence 3455666667777766432 2222332211 245566666777788999999999999999987654 577788888866
Q ss_pred HHHHhcC----CC-C---chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC-
Q 008827 168 NLLELLD----DP-G---RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL- 238 (552)
Q Consensus 168 ~Lv~ll~----~~-~---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~- 238 (552)
.++..|+ .+ + ..-..++..|.|-.-++.+.+..+.+.|.++.|...+--.......-+..+-.+.++.+.-
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 6666665 22 2 2345667889999999999999999999999998865433222334454554455544321
Q ss_pred hhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-C-------CHHHH
Q 008827 239 ECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-T-------STAVQ 309 (552)
Q Consensus 239 ~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~-------~~~v~ 309 (552)
+.......+....-.+++++... +++.+......+...+.+ +..+-. +.+.|.++.++.+++. + .-...
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~-la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLS-LAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeee-hhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 22333444556666677777543 556667777788888877 444545 7889999999998864 2 12333
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhhC-cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc-
Q 008827 310 VAALGAISNIVVDFTTRRSTFIRLG-GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC- 387 (552)
Q Consensus 310 ~~a~~aL~nl~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~- 387 (552)
..++.-..-+..+.++ .+++...+ .++.+...+.+.|......+.-+++|+++.+ +....+++.+.++-++.++.
T Consensus 291 k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433 34566666 7888999999999999999999999999854 36778888899999998885
Q ss_pred ----CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHH
Q 008827 388 ----DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ 463 (552)
Q Consensus 388 ----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~ 463 (552)
+++.++|-.++.+|||+....+ +...+...| +.+.+...+.. ..|.+.-.-++.+..+..+.+.....+..
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aG--vteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~k- 442 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAG--VTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELAK- 442 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccCC-chhhccccc--hHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHhc-
Confidence 4567888999999999986543 233445555 67777777777 66777777888888887766543333332
Q ss_pred hhHhhhhhhHHHHHHhhcCCChh-HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHH
Q 008827 464 LLLRAENKAQSCIIKFLQSNDSR-LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542 (552)
Q Consensus 464 ~~~~~~~~~v~~Lv~lL~~~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~ 542 (552)
....+..|+..-+++|.. +--+.-..+..+.. ..-..+.+..+...|+++.++.+.+..+...+..|..|+-
T Consensus 443 -----n~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk--Hs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~ 515 (604)
T KOG4500|consen 443 -----NPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK--HSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALL 515 (604)
T ss_pred -----CHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH--hhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 356778899998998875 77777777777764 1123445667788899999999988777788888877775
Q ss_pred HHh
Q 008827 543 QFN 545 (552)
Q Consensus 543 ~~~ 545 (552)
.++
T Consensus 516 ~~~ 518 (604)
T KOG4500|consen 516 STE 518 (604)
T ss_pred HHH
Confidence 544
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.59 E-value=6.1e-11 Score=125.92 Aligned_cols=470 Identities=15% Similarity=0.113 Sum_probs=269.7
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHH
Q 008827 5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTS 84 (552)
Q Consensus 5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~ 84 (552)
+.+..-.+.+++.+...+.... |+ ....+.++.++.+++..++..+.-.+.+.++.......+ ++..+.+
T Consensus 43 s~~~~~kk~alKkvIa~mt~G~----Dv--S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL----aINtl~K 112 (746)
T PTZ00429 43 GTDSYRKKAAVKRIIANMTMGR----DV--SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL----AVNTFLQ 112 (746)
T ss_pred CCCHHHHHHHHHHHHHHHHCCC----Cc--hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH----HHHHHHH
Confidence 3345556778887777765542 22 234566777888888888888888888887644432222 3445555
Q ss_pred hhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827 85 LLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT 163 (552)
Q Consensus 85 lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~ 163 (552)
-+.+ ++.+|-.|+++++.+-. ++.. .-.+..+.+.+.|.++.||..|+.|+..+....++ .+...
T Consensus 113 Dl~d~Np~IRaLALRtLs~Ir~--~~i~--------e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe----lv~~~ 178 (746)
T PTZ00429 113 DTTNSSPVVRALAVRTMMCIRV--SSVL--------EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ----LFYQQ 178 (746)
T ss_pred HcCCCCHHHHHHHHHHHHcCCc--HHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc----ccccc
Confidence 5555 67899999999998642 2232 22456677888999999999999999999886553 23456
Q ss_pred hHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH
Q 008827 164 KLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242 (552)
Q Consensus 164 g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~ 242 (552)
+.++.|.+++.+ ++.|...|..+|..+...++.. .-...+.+..|+..|.+.+ +-.+...+..|......++.
T Consensus 179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~--EW~Qi~IL~lL~~y~P~~~~-- 252 (746)
T PTZ00429 179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECN--EWGQLYILELLAAQRPSDKE-- 252 (746)
T ss_pred chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHhcCCCCcH--
Confidence 889999999984 5678899999999887655431 2233455677777776543 33455666666553322111
Q ss_pred HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc-cccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV 321 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 321 (552)
. ...++..+...|++.++.|...|++++.+++.... ..... .-..+.++++.++ +++++++..+...|..++.
T Consensus 253 -e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~--~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 253 -S--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIER--CTVRVNTALLTLS-RRDAETQYIVCKNIHALLV 326 (746)
T ss_pred -H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHH--HHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence 1 12468888899999999999999999999975421 11111 1123346677764 5678999999988877765
Q ss_pred CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827 322 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV 401 (552)
Q Consensus 322 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L 401 (552)
..+. ++... +..+.-...+++ .++...+..|..++...+ -..++ ..|.+...+.|.++...++.++
T Consensus 327 ~~P~----lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N---v~~IL-----~EL~eYa~d~D~ef~r~aIrAI 392 (746)
T PTZ00429 327 IFPN----LLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSV---APEIL-----KELAEYASGVDMVFVVEVVRAI 392 (746)
T ss_pred HCHH----HHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCccc---HHHHH-----HHHHHHhhcCCHHHHHHHHHHH
Confidence 4432 11111 223322223222 355555555555543221 11111 2233333344444555555555
Q ss_pred HHhhcCCcchHHHHHhh-------cC--------------------chHHHHHHHh--cccCchhHHHHHHHHHHhhcCC
Q 008827 402 RNLVDGRINSVEYIFAE-------DG--------------------IILDAVGRQL--RIASKAEIEIQGMYVLGNVATG 452 (552)
Q Consensus 402 ~~l~~~~~~~~~~i~~~-------~~--------------------~~~~~l~~~L--~~~~~~~v~~~a~~~L~~la~~ 452 (552)
+.++..-+.....+++. ++ .++..+...+ ..-.+++.+...+|+|+.++..
T Consensus 393 g~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 393 ASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred HHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence 54443322211111100 00 0122222211 1113455666667777765431
Q ss_pred ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh-hh-cCCC
Q 008827 453 KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN-MV-NDPC 530 (552)
Q Consensus 453 ~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~-ll-~~~~ 530 (552)
+++ ...++..+++-....+..||.....+...+... .++..+. .+..+.+ +. .+.+
T Consensus 473 --------I~~-----a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~----~p~~~~~-----~l~~vL~~~t~~~~d 530 (746)
T PTZ00429 473 --------IEN-----GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLR----DPQGMEP-----QLNRVLETVTTHSDD 530 (746)
T ss_pred --------Hhh-----HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhc----CcHHHHH-----HHHHHHHHHHhcCCC
Confidence 110 022333333333445667777777777776641 1111111 2334443 33 3578
Q ss_pred ccHHHHHHHHHHHHhh
Q 008827 531 LDVKLRVKTALEQFNS 546 (552)
Q Consensus 531 ~~v~~~a~~al~~~~~ 546 (552)
+|+|+||.....-+..
T Consensus 531 ~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 531 PDVRDRAFAYWRLLSK 546 (746)
T ss_pred hhHHHHHHHHHHHHcC
Confidence 8999998776665543
No 36
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.4e-12 Score=132.59 Aligned_cols=389 Identities=12% Similarity=0.046 Sum_probs=272.3
Q ss_pred cHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHH
Q 008827 122 TLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 122 ~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~ 198 (552)
.+..|+.-++. .|+..|..|+.-|+.+.....+.....+-...++|.|+.+|+ .+.+++..|+++|++|....|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 45566665554 499999999999998877665544555666789999999999 357899999999999998888877
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 278 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~ 278 (552)
..+++.++||.|+.-|..- ...++.|+++.+|-.+++.. -+.+.+.|++-..+.+|..-+..+|+.|.....|++.
T Consensus 248 a~vV~~~aIPvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTI-EYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999877665 35778999999999998743 3568899999999999999999999999999999987
Q ss_pred ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---hHHHHHhhCcHHHHHHhhcCCC----HHHH
Q 008827 279 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVKLLVQLSKSMD----STIR 351 (552)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~g~i~~L~~ll~~~~----~~v~ 351 (552)
+...-... .-...+|.|..+|+..|....+.++.+++.++..+.+ .-+.+...|.+....+++.-.+ ..+.
T Consensus 324 si~sd~f~--~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFH--FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccch--HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 64322212 2246789999999999999999999999999876543 3445677888888888876542 2344
Q ss_pred HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC--------------hhHHHHHHHHH----------------
Q 008827 352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--------------PSVQEQALALV---------------- 401 (552)
Q Consensus 352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~--------------~~v~~~a~~~L---------------- 401 (552)
...+..|..++.+. |.....++..++...+..+|...+ |.-+-....++
T Consensus 402 ~~vIrmls~msS~~-pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~ 480 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGS-PLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVD 480 (1051)
T ss_pred hHHHHHHHHHccCC-hHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehh
Confidence 55566666676643 444444445444444444443210 00000000000
Q ss_pred --------------------------------HHhhc--------------------------CCcchHHHHHhhcCchH
Q 008827 402 --------------------------------RNLVD--------------------------GRINSVEYIFAEDGIIL 423 (552)
Q Consensus 402 --------------------------------~~l~~--------------------------~~~~~~~~i~~~~~~~~ 423 (552)
..+.+ ..|+..+..... ++
T Consensus 481 ~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~---ll 557 (1051)
T KOG0168|consen 481 CSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD---LL 557 (1051)
T ss_pred hhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH---HH
Confidence 01111 011111111111 68
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCC
Q 008827 424 DAVGRQLRIASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSS 502 (552)
Q Consensus 424 ~~l~~~L~~~~~~~v~~~a~~~L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~ 502 (552)
+.|++.+.++.++.|+..++.+|..+.. .+......++. +..+-.++..+|.+.|..+...|....--|+.
T Consensus 558 pVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk------~~~vSS~lAG~lsskD~~vlVgALQvAEiLme-- 629 (1051)
T KOG0168|consen 558 PVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLK------NTNVSSHLAGMLSSKDLTVLVGALQVAEILME-- 629 (1051)
T ss_pred HHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHh------cchHHHHHHhhhhcCCCeeEeehHHHHHHHHH--
Confidence 9999999998999999999999998876 23334444443 47788899999999998877776655544442
Q ss_pred CCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827 503 SPGSSGRLVKLHDAGIVSHVKNMVNDP 529 (552)
Q Consensus 503 ~~~~~~~~~~l~~~g~~~~L~~ll~~~ 529 (552)
.-..-....++++|++..+.+|..+.
T Consensus 630 -Klpd~F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 630 -KLPDTFSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred -HhHHHhhhhHhhhhHHHHHHHHhccC
Confidence 11223466789999999999987643
No 37
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=5.9e-13 Score=123.41 Aligned_cols=229 Identities=18% Similarity=0.187 Sum_probs=177.7
Q ss_pred HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc
Q 008827 202 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK 281 (552)
Q Consensus 202 ~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~ 281 (552)
.+.+.+++|+.+|... .+|.+++.++.++++.+. .+..+..+.+.|+++.+..++.++++.+|..|+.++.|++.+.+
T Consensus 9 l~~~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLEST-EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 4566788999999877 478999999999999876 45788899999999999999999999999999999999988755
Q ss_pred cccchhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827 282 NLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359 (552)
Q Consensus 282 ~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 359 (552)
+... + ..+++.+++...+ -+.++|.++..+|.|++.... .. .++ .+.++.+++++..++..+|.+++++|.
T Consensus 87 n~~~---I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~-~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 87 NQEQ---I-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YH-HML-ANYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred hHHH---H-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hh-hhH-HhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4332 2 2467777775543 378999999999999986533 23 333 357999999999999999999999999
Q ss_pred HhcccCChHhHHHHHHhhcHHHHHhhhcCC-ChhHHHHHHHHHHHhhcCCcc-------------hHHHHHhhcCchHHH
Q 008827 360 NLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRIN-------------SVEYIFAEDGIILDA 425 (552)
Q Consensus 360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~-------------~~~~i~~~~~~~~~~ 425 (552)
||+. +|....+++...+...++.+++.+ +.++...++.++.|+..+-.. ..-.+|.+.+.+-+.
T Consensus 160 nLS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~ 237 (254)
T PF04826_consen 160 NLSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKK 237 (254)
T ss_pred Hhcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHH
Confidence 9976 567888899889999999999865 677899999999999755211 111333333334455
Q ss_pred HHHHhcccCchhHHHHH
Q 008827 426 VGRQLRIASKAEIEIQG 442 (552)
Q Consensus 426 l~~~L~~~~~~~v~~~a 442 (552)
+..+..+ ++++|++..
T Consensus 238 l~~l~~h-~d~ev~~~v 253 (254)
T PF04826_consen 238 LQALANH-PDPEVKEQV 253 (254)
T ss_pred HHHHHcC-CCHHHhhhc
Confidence 5555555 888887653
No 38
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.53 E-value=7.3e-11 Score=115.46 Aligned_cols=500 Identities=15% Similarity=0.123 Sum_probs=286.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCC-CcchHHHHHHHHhhcCChhhHHHHHhcCch--
Q 008827 3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNES-ENVSGLGASIISHSCKTSLEQKLLFDAGVL-- 79 (552)
Q Consensus 3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~-~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i-- 79 (552)
|.++.++....|.+.+..+...-... ..+ ++.+..+++-...+. .+....+..++.+.|........+...+++
T Consensus 103 L~s~epr~~~~Aaql~aaIA~~Elp~-~~w--p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~ 179 (858)
T COG5215 103 LKSPEPRFCTMAAQLLAAIARMELPN-SLW--PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF 179 (858)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhCcc-ccc--hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence 55677778888888888775432111 111 234445555554444 457788999999998765544444444432
Q ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCcc-HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcc
Q 008827 80 KRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT-LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL 156 (552)
Q Consensus 80 ~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~-l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~ 156 (552)
.....-++. +..+|..++.||..=+.+- ..-+.......+ +..+.+..+.++.+++.+|-.||..+....-...
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm 256 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFM 256 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233443 4589999999997722111 001111111222 3345667889999999999999999876432211
Q ss_pred hhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHH------------H----HHHHHhCcHHHHHHhhhcCCC
Q 008827 157 QDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDM------------Q----KLAFEVNGVDKLYNHLQKGSL 219 (552)
Q Consensus 157 ~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~------------~----~~~~~~~~i~~L~~~L~~~~~ 219 (552)
+ ...+.-......+.++ .+++|...+...-+.+...+-+. + ....-.+.+|.|+++|....+
T Consensus 257 ~-~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 257 Q-SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred H-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 2 2222333334445555 23445444433222222111100 0 011123457888888866432
Q ss_pred Ch-------------------------------------------hhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH
Q 008827 220 HP-------------------------------------------RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD 256 (552)
Q Consensus 220 ~~-------------------------------------------~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~ 256 (552)
++ .-|+.++.+++++..........-.-.+.+|.+..
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n 415 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN 415 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence 22 13688888888887543322222223468999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCchhHH---HH
Q 008827 257 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD---DTSTAVQVAALGAISNIVVDFTTRRS---TF 330 (552)
Q Consensus 257 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~---~~ 330 (552)
.+.++..-++..++||++.++.+.... +-..|-++..++-+- .++|.+..+++|...|++.+..+... .+
T Consensus 416 ~m~D~~l~vk~ttAwc~g~iad~va~~----i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~ 491 (858)
T COG5215 416 EMSDSCLWVKSTTAWCFGAIADHVAMI----ISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESF 491 (858)
T ss_pred hcccceeehhhHHHHHHHHHHHHHHHh----cCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccch
Confidence 999999999999999999998875432 222344444444321 34678889999999999976654321 11
Q ss_pred Hh---hCcHHHHHHhhc--CCCHHHHHHHHHHHHHhcccCChHhHHHHHH---------hhcHHHHHhhhcCCC----hh
Q 008827 331 IR---LGGVKLLVQLSK--SMDSTIRLNALRALRNLIFLAEDKCKEEIFM---------ELTASLLASLICDPE----PS 392 (552)
Q Consensus 331 ~~---~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~---------~~~~~~l~~ll~~~~----~~ 392 (552)
+- ...+..|++-.. ..+...|..+-.+|+.+....+....+.+.. ...+..+-+.+...| .+
T Consensus 492 l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~e 571 (858)
T COG5215 492 LAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEE 571 (858)
T ss_pred hHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 10 123333333221 2345567777777777654332111111110 001222222333222 46
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhh
Q 008827 393 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA 472 (552)
Q Consensus 393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~ 472 (552)
+|.+-+..|..+....+..++.+-.. +++++.++|++.....+......++++++..-++..+... ..+
T Consensus 572 lqSN~~~vl~aiir~~~~~ie~v~D~---lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~--------~~f 640 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRRDIEDVEDQ---LMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA--------SKF 640 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHH---HHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH--------hhh
Confidence 77777888877776655444433222 6889999999843445677788899999875444444333 577
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827 473 QSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP 529 (552)
Q Consensus 473 v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 529 (552)
+|.|.+.|+..|.-+...|+..++.++- +-+-.-..+..-....|++.+.++
T Consensus 641 iPyl~~aln~~d~~v~~~avglvgdlan-----tl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 641 IPYLTRALNCTDRFVLNSAVGLVGDLAN-----TLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHhcCh
Confidence 8999999988899999999999999984 211112222333456788877643
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=4e-12 Score=117.89 Aligned_cols=231 Identities=19% Similarity=0.221 Sum_probs=174.3
Q ss_pred hhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC
Q 008827 288 FMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE 366 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 366 (552)
+.+.+-++.|+.+|+ ..||.+++.|..+++|.+. ++..+..+.+.|+++.+..++.++++.+|..|++++.|++...
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~- 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND- 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-
Confidence 456778899999998 5699999999999999874 6677888899999999999999999999999999999997743
Q ss_pred hHhHHHHHHhhcHHHHHhhhcC--CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHH
Q 008827 367 DKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY 444 (552)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~ 444 (552)
+++..+ +. .++.+.+.+.+ .+..+|..++++|+|++..+. ...++.. .++.+.++|.+ ++..++.+++.
T Consensus 86 -en~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~---~i~~ll~LL~~-G~~~~k~~vLk 156 (254)
T PF04826_consen 86 -ENQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLAN---YIPDLLSLLSS-GSEKTKVQVLK 156 (254)
T ss_pred -hhHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHh---hHHHHHHHHHc-CChHHHHHHHH
Confidence 344444 22 45666654433 467899999999999986643 2333332 47778888888 89999999999
Q ss_pred HHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-ChhHHHHHHHHHHhhcCCC--C-------CCCH-HHHHHH
Q 008827 445 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTCSS--S-------PGSS-GRLVKL 513 (552)
Q Consensus 445 ~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~a~~~l~~l~~~~--~-------~~~~-~~~~~l 513 (552)
+|.|++.. ++....++. ..+++.++.++.++ +.++...+.+...|+...- + .-+. .-...+
T Consensus 157 ~L~nLS~n-p~~~~~Ll~-------~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~ 228 (254)
T PF04826_consen 157 VLVNLSEN-PDMTRELLS-------AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLF 228 (254)
T ss_pred HHHHhccC-HHHHHHHHh-------ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHH
Confidence 99999984 445566665 67788999999875 5678889999999995321 1 1111 112334
Q ss_pred HHCC-cHHHHHhhhcCCCccHHHHH
Q 008827 514 HDAG-IVSHVKNMVNDPCLDVKLRV 537 (552)
Q Consensus 514 ~~~g-~~~~L~~ll~~~~~~v~~~a 537 (552)
.+.+ .-+.|..+...++++||+++
T Consensus 229 ~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 229 GESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred ccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 4444 44677778888899999875
No 40
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7.8e-11 Score=119.12 Aligned_cols=431 Identities=16% Similarity=0.119 Sum_probs=269.4
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHH-Hh-cCChhhHHHHHHHHHHHhhhCCCcc
Q 008827 79 LKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEI-VK-DRFARTRLLASLCLIVIRNASPCYL 156 (552)
Q Consensus 79 i~~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~l-l~-~~~~~vr~~A~~~L~~l~~~~~~~~ 156 (552)
++.|...++.+..++..|-.-|..++.+| . ...+..+.+- .+ ......|..|...|.|-....+.+.
T Consensus 4 ~~~le~tlSpD~n~~~~Ae~~l~~~~~~n--f---------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~ 72 (859)
T KOG1241|consen 4 LELLEKTLSPDQNVRKRAEKQLEQAQSQN--F---------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPER 72 (859)
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHhcc--H---------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHH
Confidence 45555556666677778877777766543 1 1223333332 23 3456778888888887555443211
Q ss_pred h----------hhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC---CChh
Q 008827 157 Q----------DVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS---LHPR 222 (552)
Q Consensus 157 ~----------~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~---~~~~ 222 (552)
+ +...+..+-..+.+-|. ..++....|+++++.++..+-. .+.+|-|+..|.+.- ....
T Consensus 73 k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP-------~n~wp~li~~lv~nv~~~~~~~ 145 (859)
T KOG1241|consen 73 KQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP-------QNQWPELIVTLVSNVGEEQASM 145 (859)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc-------hhhCHHHHHHHHHhcccccchH
Confidence 1 01112223333445555 4567778888998888753321 344566665554321 1224
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhc-ccccccchhhhccCcHHHHHH
Q 008827 223 RFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSR-SIKNLSAGSFMNETIVIPLVR 299 (552)
Q Consensus 223 ~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~-~~~~~~~~~~~~~~~i~~Lv~ 299 (552)
+++..+.+++.+|.+-..-...-....++-.++..++ .++..||.+|..+|.+--. ...+.+.. ....=++...+.
T Consensus 146 ~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcE 224 (859)
T KOG1241|consen 146 VKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeee
Confidence 8899999999999753221111112346777777776 4578999999999986422 11233333 222334555666
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHH------
Q 008827 300 LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI------ 373 (552)
Q Consensus 300 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i------ 373 (552)
.-+.+|.+++.+|..+|..++.-+....+..++......-+.-+++++++|...++..=+++|... .+.-.+.
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE-iD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE-IDLAIEYGEAVDQ 303 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence 667899999999999999998766666666666777777888889999999999998888777521 1111111
Q ss_pred ---------H---HhhcHHHHHhhhcC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccC
Q 008827 374 ---------F---MELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS 434 (552)
Q Consensus 374 ---------~---~~~~~~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~ 434 (552)
. -..++|.|+++|.. +++..-..|-.+|.-++....+ .++.. +++.+-..+++ +
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~---Vl~Fiee~i~~-p 376 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPH---VLPFIEENIQN-P 376 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhh---hHHHHHHhcCC-c
Confidence 0 12467888888843 3345555555555444322211 12221 55666666777 8
Q ss_pred chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 008827 435 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 514 (552)
Q Consensus 435 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~ 514 (552)
+..-++.+..+++.+-.|.+..+..-+- .+++|.++.++.++.-.++..++|+++.++. .-..-..-...
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV-------~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d---~l~e~~~n~~~ 446 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIV-------IQALPSIINLMSDPSLWVKDTAAWTLGRIAD---FLPEAIINQEL 446 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHH-------hhhhHHHHHHhcCchhhhcchHHHHHHHHHh---hchhhcccHhh
Confidence 9999999999999999877644433332 5788999999998888999999999999984 11111111122
Q ss_pred HCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 515 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 515 ~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
..+.++.+.+=++| .|.+...++||+..+.+-
T Consensus 447 l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 447 LQSKLSALLEGLND-EPRVASNVCWAFISLAEA 478 (859)
T ss_pred hhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHH
Confidence 33445555554444 788999999999998864
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=99.45 E-value=4.1e-09 Score=112.20 Aligned_cols=327 Identities=12% Similarity=0.141 Sum_probs=194.6
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 114 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~ 114 (552)
-++..+.+-++++++.+|-.|..+++++.. ++.- .-.++++.+.+.+ ++-||..|+.|+.++-..+++...
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-- 176 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-- 176 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--
Confidence 356778888888999999999999998863 2211 1234566677765 788999999999998766655421
Q ss_pred ccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcC
Q 008827 115 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAE 193 (552)
Q Consensus 115 ~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~ 193 (552)
..+.++.+.+++.|.++.|..+|..+|..+....+.. .....+.+..|+..+.+. ++.+.....+|....-.
T Consensus 177 ----~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~---l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~ 249 (746)
T PTZ00429 177 ----QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK---IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS 249 (746)
T ss_pred ----ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh---hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Confidence 2456778888999999999999999999997755431 123345566666666653 34466666666543222
Q ss_pred CHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC-hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827 194 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC 272 (552)
Q Consensus 194 ~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~ 272 (552)
+.... ...+..+...|++.+ +.+...|++++.++.... ++...... ..+-+.++.+ .++++++|..++..
T Consensus 250 ~~~e~-----~~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~ 320 (746)
T PTZ00429 250 DKESA-----ETLLTRVLPRMSHQN--PAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKN 320 (746)
T ss_pred CcHHH-----HHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHH
Confidence 21111 234556666677664 778888999888886532 22222211 1123555555 45677899999888
Q ss_pred HHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHH
Q 008827 273 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 352 (552)
Q Consensus 273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~ 352 (552)
|..+....+. +... -+...+-...|+. .++......|..++... + .. .++..|.++..+.+.+++.
T Consensus 321 I~~i~~~~P~-----lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~-N-v~-----~IL~EL~eYa~d~D~ef~r 386 (746)
T PTZ00429 321 IHALLVIFPN-----LLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPS-V-AP-----EILKELAEYASGVDMVFVV 386 (746)
T ss_pred HHHHHHHCHH-----HHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCcc-c-HH-----HHHHHHHHHhhcCCHHHHH
Confidence 8777654322 1111 1222223333433 36777777777666432 1 11 1335556666666667777
Q ss_pred HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 353 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
.++.++++++...+ .. ....++.|++++.+... +..+++..++++...
T Consensus 387 ~aIrAIg~lA~k~~-~~-----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 387 EVVRAIASLAIKVD-SV-----APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred HHHHHHHHHHHhCh-HH-----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 77777777764322 11 12234445555543222 233445555555443
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.42 E-value=3e-12 Score=106.54 Aligned_cols=118 Identities=26% Similarity=0.288 Sum_probs=107.4
Q ss_pred HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827 244 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 244 ~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 323 (552)
.+.+.|+++.++++++++++.++..++.+|.+++...+..+.. +.+.|++|.++.++.+++++++..|+++|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQA-VVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHH-HHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3567899999999999999999999999999999875555555 778899999999999999999999999999999887
Q ss_pred chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 324 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 324 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
+.....+.+.|+++.+++++.+++..++..++++|.+++
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 777778888999999999999999999999999999986
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.39 E-value=1e-11 Score=103.23 Aligned_cols=117 Identities=28% Similarity=0.283 Sum_probs=108.1
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh
Q 008827 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 367 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 367 (552)
+.+.|+++.++.++.+++++++..++++|++++.+.+.....+.+.|+++.+++++.++++.++..++++|++++.+ .+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-PE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-cH
Confidence 56789999999999999999999999999999988778888888899999999999999999999999999999984 44
Q ss_pred HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 368 ~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
..+..+...|.++.+.+++.+++.++++.++++|++++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 57777888899999999999999999999999999986
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.27 E-value=3.6e-09 Score=104.68 Aligned_cols=324 Identities=17% Similarity=0.145 Sum_probs=213.1
Q ss_pred hHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHh-----CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhc
Q 008827 164 KLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEV-----NGVDKLYNHLQKGSLHPRRFEGILLALADMCS 236 (552)
Q Consensus 164 g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~ 236 (552)
.....++.++. ..+++.......+..|..+++.....+.+. +...+++.+|..+ +.-+...+...++.+..
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~--d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ--DQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC--chhHHHHHHHHHHHHHh
Confidence 45566666665 234455556666666666666554555543 4567788877654 35678888888888865
Q ss_pred CChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHHH
Q 008827 237 KLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAAL 313 (552)
Q Consensus 237 ~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~ 313 (552)
..............++.+...++.+ +...+..++.++..|-+. +..|.. |...++++.|+.+|+. .+..++..++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~-f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFA-FVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHH-HHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 3322111111111344555566543 467788888999999887 566766 7788899999999974 2668999999
Q ss_pred HHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccC-----ChHhHHHHHHhhcHHHHHhhhc
Q 008827 314 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLA-----EDKCKEEIFMELTASLLASLIC 387 (552)
Q Consensus 314 ~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~-----~~~~~~~i~~~~~~~~l~~ll~ 387 (552)
.++.-++.... ....+.+.+.++.++++++.. .+++.+-++.++.|+.... .......+++.+..+.+..+..
T Consensus 209 l~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 209 FCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred HHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 99998886543 444566679999999999864 5778888999999997632 1123345555555554444432
Q ss_pred --CCChhHHHHHHHHHHHh-------h--------------cCCcchH-HHHHh-------h-cCchHHHHHHHhcccCc
Q 008827 388 --DPEPSVQEQALALVRNL-------V--------------DGRINSV-EYIFA-------E-DGIILDAVGRQLRIASK 435 (552)
Q Consensus 388 --~~~~~v~~~a~~~L~~l-------~--------------~~~~~~~-~~i~~-------~-~~~~~~~l~~~L~~~~~ 435 (552)
-.|+++.+..-.+-..+ + ...|.+. +..+. + +..++..|..+|..+.+
T Consensus 288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d 367 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVD 367 (429)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 34555544322111111 1 0112221 12222 2 22378889999976678
Q ss_pred hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 436 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 436 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
+.+..-||+-|+.++..-|..+. ++++ -|+-..+++++.++|++||.+|..|+..+.
T Consensus 368 ~~~laVAc~Dige~vr~~P~gr~-i~~~------lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 368 PIILAVACHDIGEYVRHYPRGKD-VVEQ------LGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred cceeehhhhhHHHHHHHCccHHH-HHHH------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88999999999999987765444 5552 788899999999999999999999998875
No 45
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.2e-08 Score=98.42 Aligned_cols=393 Identities=11% Similarity=0.113 Sum_probs=253.4
Q ss_pred CcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH
Q 008827 50 ENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128 (552)
Q Consensus 50 ~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 128 (552)
+.....|...|-|++.+-......++.+.+..|+..|.. +.+.......-|-.++-..++. ..+ ...+.+..+++
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK-~~M---~~~~iveKL~k 352 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK-IVM---EQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch-HHH---HhccHHHHHHH
Confidence 344466777788888666666677888999999999985 4455555555555554332221 111 13678889999
Q ss_pred HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHH
Q 008827 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD 208 (552)
Q Consensus 129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 208 (552)
++...+++.+....+.+.|++..+.. +..++..|.+|.|..+++++.. ..-|...+..++.++. .+.-+....+|+
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~gl--r~KMv~~GllP~l~~ll~~d~~-~~iA~~~lYh~S~dD~-~K~MfayTdci~ 428 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDSGL--RPKMVNGGLLPHLASLLDSDTK-HGIALNMLYHLSCDDD-AKAMFAYTDCIK 428 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhccccccc--cHHHhhccchHHHHHHhCCccc-chhhhhhhhhhccCcH-HHHHHHHHHHHH
Confidence 99999999999999999999987643 5678999999999999975432 2235556666666554 344455678899
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHh-cCCCCHHHHHHHHHHHHHhhcccccccchh
Q 008827 209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LAHDSSDVRSAACMCLRSVSRSIKNLSAGS 287 (552)
Q Consensus 209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~-L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~ 287 (552)
.+++.+-... ..++-...+..--++|.+ ..+.+.+.+-+++..+.+. ++..++-+ .+.+++++.+.+.....
T Consensus 429 ~lmk~v~~~~-~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~- 501 (791)
T KOG1222|consen 429 LLMKDVLSGT-GSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNM- 501 (791)
T ss_pred HHHHHHHhcC-CceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHH-
Confidence 9998665553 222222222222466653 3333445555577776653 44555533 45688998874433322
Q ss_pred hhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccc
Q 008827 288 FMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNLIFL 364 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 364 (552)
|. .++..|...+. +.+++...++.++++|+....-++.+.+.+.+.+|.+-..++.+ ..++....+-+++.++..
T Consensus 502 Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d 579 (791)
T KOG1222|consen 502 FI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD 579 (791)
T ss_pred HH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence 33 56667777776 56778899999999999876667776777788999998877753 244666666666666552
Q ss_pred CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-CchhHHHHHH
Q 008827 365 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGM 443 (552)
Q Consensus 365 ~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~ 443 (552)
. .+..-+...+.++.++++| +.. .+++...+.+
T Consensus 580 ~--~cA~Lla~a~~i~tlieLL--------------------------------------------~a~QeDDEfV~Qii 613 (791)
T KOG1222|consen 580 L--DCARLLAPAKLIDTLIELL--------------------------------------------QACQEDDEFVVQII 613 (791)
T ss_pred h--HHHHHhCccccHHHHHHHH--------------------------------------------HhhcccchHHHHHH
Confidence 2 2222222333444444444 321 2344555555
Q ss_pred HHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC
Q 008827 444 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA 516 (552)
Q Consensus 444 ~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~ 516 (552)
++...+... +..++.++. +...-..++.++++.|.++|+-|-.+|--++. ...|+.+++..+
T Consensus 614 yVF~Q~l~H-e~tr~~mik------et~~~AylIDLMHDkN~eiRkVCDn~LdIiae----~d~EWAKrI~~E 675 (791)
T KOG1222|consen 614 YVFLQFLKH-ELTRRLMIK------ETALGAYLIDLMHDKNAEIRKVCDNALDIIAE----HDKEWAKRIAGE 675 (791)
T ss_pred HHHHHHHHH-HHHHHHHHh------hccchHHHHHHHhcccHHHHHHHHHHHHHHHH----hhHHHHHHHhhh
Confidence 555555543 334555553 24455689999999999999999888887774 456777776543
No 46
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=9.2e-09 Score=99.11 Aligned_cols=387 Identities=11% Similarity=0.080 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhc
Q 008827 8 MEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG 87 (552)
Q Consensus 8 ~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~ 87 (552)
..+.+.|+-.|.++..-.... ..+.....+..|+..|.-.+.+....+.+.|.+++-..+++....+.|.++.|+++..
T Consensus 277 eqLLrva~ylLlNlAed~~~E-lKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVE-LKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHH-HHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 456777888888875433222 3445678889999999877788889999999999989999999999999999999999
Q ss_pred C-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHH
Q 008827 88 G-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLI 166 (552)
Q Consensus 88 ~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i 166 (552)
. .+..+...++.+.+++++.... .+++ .+|.+|.+..++.++.- +-.|...++.++.... .+..+....++
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr-~KMv---~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~--~K~MfayTdci 427 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLR-PKMV---NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD--AKAMFAYTDCI 427 (791)
T ss_pred CCCHHHHHHHHHHhhhcccccccc-HHHh---hccchHHHHHHhCCccc--chhhhhhhhhhccCcH--HHHHHHHHHHH
Confidence 7 6788889999999998876444 3443 37899999999886543 3457778888877543 34456667899
Q ss_pred HHHHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHH
Q 008827 167 NNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSR 244 (552)
Q Consensus 167 ~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 244 (552)
+.+++.+-. +.+|-.......-|++-.. .+.+.+.+..|+..|++.--.. .++ +. ...+.+++.++...+..
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~-~D~-lL---mK~vRniSqHeg~tqn~ 501 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKS-RDL-LL---MKVVRNISQHEGATQNM 501 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcc-cch-HH---HHHHHHhhhccchHHHH
Confidence 999887653 3344333322233555333 3345567788899998743332 122 22 34556666655555555
Q ss_pred HHhcccHHHHHHhcCC-CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhc
Q 008827 245 CLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVV 321 (552)
Q Consensus 245 ~~~~~~l~~lv~~L~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~ 321 (552)
+++ .+.-+...++. .+......+.+.+.+|.-..-.-... +.....+|-+=..|+. ...+++...+-+++.++.
T Consensus 502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i-lq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~ 578 (791)
T KOG1222|consen 502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI-LQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR 578 (791)
T ss_pred HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH-HhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh
Confidence 554 44455555553 44556667777777776542221212 4556778877777752 244677778888888776
Q ss_pred CCchhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhHHHHH-HhhcHHHHHhhhcCCChhHHHHHH
Q 008827 322 DFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIF-MELTASLLASLICDPEPSVQEQAL 398 (552)
Q Consensus 322 ~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~i~-~~~~~~~l~~ll~~~~~~v~~~a~ 398 (552)
+. .+...+..+|.++.++++++. .+.+...+.+.....+..+. ..+..++ +...-..++.++.+.+.+++..+-
T Consensus 579 d~-~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCD 655 (791)
T KOG1222|consen 579 DL-DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCD 655 (791)
T ss_pred hh-HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHH
Confidence 53 445567778999999999986 46677777888777777652 2344444 555677899999999999999888
Q ss_pred HHHHHhhcCCcchHHHH
Q 008827 399 ALVRNLVDGRINSVEYI 415 (552)
Q Consensus 399 ~~L~~l~~~~~~~~~~i 415 (552)
.+|--++..+.+-.+.+
T Consensus 656 n~LdIiae~d~EWAKrI 672 (791)
T KOG1222|consen 656 NALDIIAEHDKEWAKRI 672 (791)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 88877777765444433
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.16 E-value=3.8e-08 Score=97.51 Aligned_cols=322 Identities=13% Similarity=0.095 Sum_probs=221.0
Q ss_pred CchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccc--cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827 77 GVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGP--DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS 152 (552)
Q Consensus 77 g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~ 152 (552)
..+..++.+|.. .+.+....+.-+..|..+++.....+.+. .+.+....++.+++.+|..+...|+..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 456778888875 45777788888888888887766555432 12456677788999999999999999999998765
Q ss_pred CCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827 153 PCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA 230 (552)
Q Consensus 153 ~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a 230 (552)
+... +........+.|...++ ++.+.+..+..+|..|....+ ++..+.+.++++.|+++|+........+-.++.+
T Consensus 133 ~~~~-~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 133 LAKM-EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred cccc-chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 4321 11112224455666665 345667777889988886654 4667778889999999998753345678889999
Q ss_pred HHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccc------cccchhhhccCcHHHHHHhhcC
Q 008827 231 LADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIK------NLSAGSFMNETIVIPLVRLLDD 303 (552)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~------~~~~~~~~~~~~i~~Lv~lL~~ 303 (552)
++-++.+. +........+.++.++++++.. -..+.+-++.+++|+..... ..... +++.|+ +++++.|+.
T Consensus 211 lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~-mv~~~l-~~~l~~L~~ 287 (429)
T cd00256 211 IWLLTFNP-HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ-MVQCKV-LKTLQSLEQ 287 (429)
T ss_pred HHHHhccH-HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH-HHHcCh-HHHHHHHhc
Confidence 99998654 4555566778999999999865 56788888999999976421 11112 455555 445555542
Q ss_pred ---CCHHHHHHHHHH-------HHHhhcCCchhH------------------------HHHHhh--CcHHHHHHhhc-CC
Q 008827 304 ---TSTAVQVAALGA-------ISNIVVDFTTRR------------------------STFIRL--GGVKLLVQLSK-SM 346 (552)
Q Consensus 304 ---~~~~v~~~a~~a-------L~nl~~~~~~~~------------------------~~~~~~--g~i~~L~~ll~-~~ 346 (552)
+|+++.+.-... +..++ .++.+. ..+-+. ..+..|++++. +.
T Consensus 288 rk~~DedL~edl~~L~e~L~~~~k~lt-sfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~ 366 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEELKNSVQDLS-SFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV 366 (429)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 466554322211 11111 111111 122222 36788999985 45
Q ss_pred CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 347 DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 347 ~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
++.+..-|+.=++.+++.- |..|..+-..|+-..+.+++.++|++|+.+|+.++..+.
T Consensus 367 d~~~laVAc~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 367 DPIILAVACHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CcceeehhhhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6777777888899998865 556766667889999999999999999999998887764
No 48
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.16 E-value=1.3e-07 Score=95.76 Aligned_cols=446 Identities=15% Similarity=0.144 Sum_probs=259.1
Q ss_pred ccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CH----HHHHHHHHHHHHHhcCC
Q 008827 33 LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SL----IQRDASLESIATIFKNN 107 (552)
Q Consensus 33 ~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~----~v~~~al~~L~~l~~~~ 107 (552)
|...++-.+.+=+.++|+.....+..++..||..........+...+|.++....+ .. +.-......-..+|
T Consensus 633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia--- 709 (1172)
T KOG0213|consen 633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA--- 709 (1172)
T ss_pred hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH---
Confidence 34556777777788999999999999999999876654444444455544443322 00 00001111112222
Q ss_pred hhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-C--chhchHH
Q 008827 108 PEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-G--RVGDEAS 184 (552)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~--~v~~~a~ 184 (552)
.++ .....+..++.-++|+++.-|...+.....+...-+....+....+..+..+.-.+++. . .|.....
T Consensus 710 ----~Kv---G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf 782 (1172)
T KOG0213|consen 710 ----AKV---GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF 782 (1172)
T ss_pred ----HHh---CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH
Confidence 111 12345566677788999988888887777765543322344455566666666666632 1 2333443
Q ss_pred HHHHHhhcC--CHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH--HHHHHhcccHHHHHHhcCC
Q 008827 185 FAFSSLIAE--KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC--RSRCLSLQVLKLVVDALAH 260 (552)
Q Consensus 185 ~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~--~~~~~~~~~l~~lv~~L~~ 260 (552)
.++.+-... .+.. ...+..++..|.+. .+++|++|+..++.++.--..+ -+.+...| -.|.+.|..
T Consensus 783 g~V~~~lg~r~kpyl------pqi~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylge 852 (1172)
T KOG0213|consen 783 GTVVNALGGRVKPYL------PQICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGE 852 (1172)
T ss_pred HHHHHHHhhccccch------HHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCc
Confidence 333322111 1110 11122333445554 5889999999999887521111 11222233 346788888
Q ss_pred CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---hHHHHHhhCcHH
Q 008827 261 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVK 337 (552)
Q Consensus 261 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~g~i~ 337 (552)
..+++.-...+++..+.....-.... ---.+++|.|.-+|++.+..+++++...++.++...+. .++++. +-=
T Consensus 853 eypEvLgsILgAikaI~nvigm~km~-pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---Icf 928 (1172)
T KOG0213|consen 853 EYPEVLGSILGAIKAIVNVIGMTKMT-PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICF 928 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhccccccC-CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHH
Confidence 99999887777777776543211111 12358899999999999999999999999999875543 233332 223
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHH---HH--HHHHHhhcCCcchH
Q 008827 338 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ---AL--ALVRNLVDGRINSV 412 (552)
Q Consensus 338 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~---a~--~~L~~l~~~~~~~~ 412 (552)
-|+++|++-+..+|.+|..+++.++....| -+.|..||+.- ++|+. .+ -++.-.+..+.
T Consensus 929 eLlelLkahkK~iRRaa~nTfG~IakaIGP-----------qdVLatLlnnL--kvqeRq~RvcTtvaIaIVaE~c~--- 992 (1172)
T KOG0213|consen 929 ELLELLKAHKKEIRRAAVNTFGYIAKAIGP-----------QDVLATLLNNL--KVQERQNRVCTTVAIAIVAETCG--- 992 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhcCH-----------HHHHHHHHhcc--hHHHHHhchhhhhhhhhhhhhcC---
Confidence 466778888899999999999999775443 33444444432 22221 11 11111111110
Q ss_pred HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHH
Q 008827 413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA 491 (552)
Q Consensus 413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a 491 (552)
.|. +++.|+.=... |+..||...+.+++.+..-- +...+ .+ ..+.|.|...|-+.|...|..|
T Consensus 993 --pFt----VLPalmneYrt-Pe~nVQnGVLkalsf~Feyigemskd-Yi--------yav~PlleDAlmDrD~vhRqta 1056 (1172)
T KOG0213|consen 993 --PFT----VLPALMNEYRT-PEANVQNGVLKALSFMFEYIGEMSKD-YI--------YAVTPLLEDALMDRDLVHRQTA 1056 (1172)
T ss_pred --chh----hhHHHHhhccC-chhHHHHhHHHHHHHHHHHHHHHhhh-HH--------HHhhHHHHHhhccccHHHHHHH
Confidence 011 44444433333 67778888888888765411 11122 22 3456778888888999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc-------CCCccHHHHHHHHHHHHh
Q 008827 492 VWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-------DPCLDVKLRVKTALEQFN 545 (552)
Q Consensus 492 ~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-------~~~~~v~~~a~~al~~~~ 545 (552)
+.++.+++.+ ..| -|..+.++.|++ +++|.|..+...+++.+.
T Consensus 1057 ~~~I~Hl~Lg-~~g----------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r 1106 (1172)
T KOG0213|consen 1057 MNVIKHLALG-VPG----------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLR 1106 (1172)
T ss_pred HHHHHHHhcC-CCC----------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHH
Confidence 9999999874 222 244444444432 566777766666665554
No 49
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5e-09 Score=107.35 Aligned_cols=256 Identities=16% Similarity=0.155 Sum_probs=195.0
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHh-hcccccccchhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhH
Q 008827 251 LKLVVDALAHD-SSDVRSAACMCLRSV-SRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRR 327 (552)
Q Consensus 251 l~~lv~~L~~~-~~~v~~~a~~~L~~l-s~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~ 327 (552)
+..|++-|+.. ++..+..++.=++.+ +...+..-.. |--..++|.|+.+|+++ +.+++-.|++||.+|+...+...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~-fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSG-FPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhcc-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 45555555543 666665555444433 3332222223 55567899999999964 78999999999999999888888
Q ss_pred HHHHhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827 328 STFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 406 (552)
Q Consensus 328 ~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (552)
..+++.++||.|++ ++.-...++.++++.||..+.+. ....++..|++...+..++--+..+|+.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~----H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR----HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh----ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999996 55557789999999999999763 34688899999999999988888999999999999996
Q ss_pred C-CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh---hhHHHHHHHhhHhhhhhhHHHHHHhhcC
Q 008827 407 G-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE---SHKEAVMDQLLLRAENKAQSCIIKFLQS 482 (552)
Q Consensus 407 ~-~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~---~~~~~i~~~~~~~~~~~~v~~Lv~lL~~ 482 (552)
. .++...++++ .+|+|..+|+. .+.+..+.++-++..++.+.. +..+.+.. +|.+....++|.-
T Consensus 324 si~sd~f~~v~e----alPlL~~lLs~-~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-------~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 324 SIRSDEFHFVME----ALPLLTPLLSY-QDKKPIESVCICLTRIADGFQHGPDKLDQLCS-------HDLITNIQQLLSV 391 (1051)
T ss_pred cCCCccchHHHH----HHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccChHHHHHHhc-------hhHHHHHHHHHhc
Confidence 6 4556677777 78999999988 788888999999998887543 33344443 8888988888875
Q ss_pred CCh----hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc
Q 008827 483 NDS----RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN 527 (552)
Q Consensus 483 ~~~----~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~ 527 (552)
... .+....+..++.++. +++...+.+.+.++...|..++.
T Consensus 392 t~t~Ls~~~~~~vIrmls~msS----~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 392 TPTILSNGTYTGVIRMLSLMSS----GSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred CcccccccchhHHHHHHHHHcc----CChHHHHHHHHhhHHHHHHHHHh
Confidence 432 344555666666664 66777888889999999999875
No 50
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.09 E-value=6.9e-07 Score=88.24 Aligned_cols=499 Identities=12% Similarity=0.040 Sum_probs=279.0
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCcccc-----------cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHH
Q 008827 5 KSYMEVVDAGARSLKMIYQSKMAPKYDFL-----------QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLL 73 (552)
Q Consensus 5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-----------~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l 73 (552)
++.+.+...+--+|+|-...++..+..-+ ++.+=...++.|.++.+.....|++.+.-+++- .+
T Consensus 52 ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~-----El 126 (858)
T COG5215 52 NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARM-----EL 126 (858)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-----hC
Confidence 44555555666666666555443321111 112224467788889999999999999988742 22
Q ss_pred HhcCchHHHHHhhcC-----CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH--HHhcCChhhHHHHHHHHH
Q 008827 74 FDAGVLKRLTSLLGG-----SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE--IVKDRFARTRLLASLCLI 146 (552)
Q Consensus 74 ~~~g~i~~L~~lL~~-----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~--ll~~~~~~vr~~A~~~L~ 146 (552)
...-|...+..+..+ ....+..++.+++.+|..... +.+.. ..+..+-.++. +-+..+..+|..|+++|.
T Consensus 127 p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~-~sN~il~aiv~ga~k~et~~avRLaaL~aL~ 203 (858)
T COG5215 127 PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQ-MSNVILFAIVMGALKNETTSAVRLAALKALM 203 (858)
T ss_pred ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHH-HhhHHHHHHHHhhcccCchHHHHHHHHHHHH
Confidence 333344444444432 237888999999999965322 11111 11334444444 334678899999999999
Q ss_pred H-HhhhCCCcchhhhhHHhHHHHHHHhcC-----CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcH-HHHHHhhhcCCC
Q 008827 147 V-IRNASPCYLQDVGIKTKLINNLLELLD-----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV-DKLYNHLQKGSL 219 (552)
Q Consensus 147 ~-l~~~~~~~~~~~~~~~g~i~~Lv~ll~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~~L~~~L~~~~~ 219 (552)
+ +... +..+-.++--..+++... ++.+++..|..+|.++..-+-.+-+...+ +++ .......++++
T Consensus 204 dsl~fv-----~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~n- 276 (858)
T COG5215 204 DSLMFV-----QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQN- 276 (858)
T ss_pred HHHHHH-----HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcc-
Confidence 8 3321 222222333334444433 33467888888888887544333232222 333 33344455543
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHH----------------hcccHHHHHHhcCC-------CCHHHHHHHHHHHHHh
Q 008827 220 HPRRFEGILLALADMCSKLECCRSRCL----------------SLQVLKLVVDALAH-------DSSDVRSAACMCLRSV 276 (552)
Q Consensus 220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~----------------~~~~l~~lv~~L~~-------~~~~v~~~a~~~L~~l 276 (552)
.++...++...+-+|...-+..-... -..++|.++.+|.. ++|.+..+|..||.-+
T Consensus 277 -d~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf 355 (858)
T COG5215 277 -DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF 355 (858)
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHH
Confidence 56777777777666653211111111 12478999999963 4688999999999888
Q ss_pred hcccccccchhhhccCcHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLL----DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 352 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~ 352 (552)
+.... ..++.+.+.+. +++++.-++.|+.+++.+..+.......-+-..++|.+..++.++.-.++.
T Consensus 356 aq~~g---------d~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ 426 (858)
T COG5215 356 AQLKG---------DKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS 426 (858)
T ss_pred HHHhh---------hHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence 76532 23344555554 578899999999999999876654332333357889999888888888999
Q ss_pred HHHHHHHHhcccCChHhHHHHHHhhcHHHHHh-hhc--CCChhHHHHHHHHHHHhhcCCcchHHH---HHh---hcCchH
Q 008827 353 NALRALRNLIFLAEDKCKEEIFMELTASLLAS-LIC--DPEPSVQEQALALVRNLVDGRINSVEY---IFA---EDGIIL 423 (552)
Q Consensus 353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~-ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~---i~~---~~~~~~ 423 (552)
.+.|+++.++.+.. ..+--++.++..++ .+. .+.|.+..++.|..-|+.++-++.... .+. .. ++
T Consensus 427 ttAwc~g~iad~va----~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a--i~ 500 (858)
T COG5215 427 TTAWCFGAIADHVA----MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA--IL 500 (858)
T ss_pred HHHHHHHHHHHHHH----HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH--HH
Confidence 99999999875321 11111222222221 111 245678889999999998764332211 000 00 22
Q ss_pred HHHHHHhcc-cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh-----------hcCC----ChhH
Q 008827 424 DAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF-----------LQSN----DSRL 487 (552)
Q Consensus 424 ~~l~~~L~~-~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l-----------L~~~----~~~~ 487 (552)
..|++.=+- .++...+..+..+|+-+..-+++....++. |+.....+- |... ..++
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a--------~~~~~~~~kl~~~isv~~q~l~~eD~~~~~el 572 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA--------GFYDYTSKKLDECISVLGQILATEDQLLVEEL 572 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 222211100 134556777777777776655544444432 333332222 2112 2346
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCc-cHHHHHHHHHHHHhhh
Q 008827 488 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL-DVKLRVKTALEQFNSF 547 (552)
Q Consensus 488 ~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~-~v~~~a~~al~~~~~~ 547 (552)
+.+-+..|..+.........+ .+......+.+++++..+ -+.+.+..|+..++.+
T Consensus 573 qSN~~~vl~aiir~~~~~ie~-----v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 573 QSNYIGVLEAIIRTRRRDIED-----VEDQLMELFIRILESTKPTTAFGDVYTAISALSTS 628 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccc-----HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH
Confidence 666666666665421111011 122235667777765433 3445667777666553
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.9e-06 Score=86.98 Aligned_cols=337 Identities=14% Similarity=0.170 Sum_probs=237.6
Q ss_pred ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC---CHHHHHHHHHHHHHHhcCCh--
Q 008827 35 EENMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNP-- 108 (552)
Q Consensus 35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~-- 108 (552)
..+|+.|+.-.. +.-.+-|+.|+.-|...++ .+|.. +...|+++++..|+. ++++-..+++++..+...++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 467888887775 3446778888888877764 34443 345678899999985 45777889999999875442
Q ss_pred ----hh------hhhhcc--ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH-HhHHHHHHHhcCC
Q 008827 109 ----EV------VSQFVG--PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLELLDD 175 (552)
Q Consensus 109 ----~~------~~~~~~--~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~g~i~~Lv~ll~~ 175 (552)
+. ...+++ ....+-+..++..+...|..||..|...+..+....+...++.+.. ..+|..|+.+|.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 10 111111 0135567788889999999999999999999988776656655544 5689999999997
Q ss_pred C-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-CC-hhhHHHHHHHHHHhhcCChhHHHHHHhcccHH
Q 008827 176 P-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LH-PRRFEGILLALADMCSKLECCRSRCLSLQVLK 252 (552)
Q Consensus 176 ~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~-~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~ 252 (552)
. ..+|.++.-.|..+..+++..++.++=.++...|.+++.... .+ .-+.+.|+..|.++-+++..++..+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 6 467999999999999999999998888889999999887652 22 25789999999999999888888899999999
Q ss_pred HHHHhcCC---CC-----HHHH-----HHHHHHHHHhhccc-----ccccchhhhccCcHHHHHHhhcCC--CHHHHHHH
Q 008827 253 LVVDALAH---DS-----SDVR-----SAACMCLRSVSRSI-----KNLSAGSFMNETIVIPLVRLLDDT--STAVQVAA 312 (552)
Q Consensus 253 ~lv~~L~~---~~-----~~v~-----~~a~~~L~~ls~~~-----~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a 312 (552)
.+..+|.. ++ |.-+ ..+..+++.+.... ...++..+...+++..|..++-++ ..+++..+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 99988862 22 3222 23344555553221 111222256678888999988765 56899999
Q ss_pred HHHHHHhhcCCchhHHHHHhh------C---cHHHHH-HhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHH
Q 008827 313 LGAISNIVVDFTTRRSTFIRL------G---GVKLLV-QLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFM 375 (552)
Q Consensus 313 ~~aL~nl~~~~~~~~~~~~~~------g---~i~~L~-~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~ 375 (552)
.-++++.+.++..+...+.+. + .+-.++ .+..+ -....|...+..+..+.+.. .+.+.+++.
T Consensus 338 iitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN-~~gq~~~l~ 410 (970)
T KOG0946|consen 338 IITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN-DDGQRKFLK 410 (970)
T ss_pred HHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc-hhhHHHHHH
Confidence 999999999887776665542 1 222222 22222 35678888888888776633 334444433
No 52
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.4e-07 Score=90.80 Aligned_cols=412 Identities=12% Similarity=0.089 Sum_probs=232.9
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827 80 KRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQD 158 (552)
Q Consensus 80 ~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~ 158 (552)
+-++.+|.+ .+-+|..|...+..++-.+|+.. ...++.+.+-+.++||.|+.+|+..++.+++.+|....
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--------r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--------RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--------hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 456778886 45789999999988887666653 34678899999999999999999999999998875433
Q ss_pred hhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHh--
Q 008827 159 VGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM-- 234 (552)
Q Consensus 159 ~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l-- 234 (552)
..-|.+.++|. .+.++-.......++|..-+|... ...+++|.+++.+.. ...+...++.++-..
T Consensus 218 -----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~-AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 218 -----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTV-AMSLLYECVNTVVAVSM 286 (877)
T ss_pred -----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhH-HHHHHHHHHHHheeehh
Confidence 36788899997 345677788888888887777653 345778888776652 223333344433322
Q ss_pred hcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHH
Q 008827 235 CSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG 314 (552)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~ 314 (552)
....++.-..+ .-.+..|-.++.+.++.+++-++-+++.+...++..-+ ..-..+++.|.|.|+.+|..|..
T Consensus 287 s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq------a~kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 287 SSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ------AHKDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred ccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH------HhHHHHHHHhccCCchhHHHHHH
Confidence 11111111110 11355666677899999999999999999876543221 22357888999999999999999
Q ss_pred HHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHh-hcHHHHHhhhcCCChh
Q 008827 315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFME-LTASLLASLICDPEPS 392 (552)
Q Consensus 315 aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~-~~~~~l~~ll~~~~~~ 392 (552)
.+-.++.. .+.. .++..|+..+.. +....|-..+.-+..+|..++ -+.+.+- =.+..++++.+-+-.+
T Consensus 359 Ll~gmVsk--kNl~-----eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn---Y~~ItdFEWYlsVlveLa~l~~~~ 428 (877)
T KOG1059|consen 359 LLYGMVSK--KNLM-----EIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN---YQYITDFEWYLSVLVELARLEGTR 428 (877)
T ss_pred HHHHHhhh--hhHH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh---hhhhhhHHHHHHHHHHHHhccccc
Confidence 99877742 2211 245556654433 333566666655555655332 1111110 0123333333211110
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH--Hh-----cccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827 393 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR--QL-----RIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL 465 (552)
Q Consensus 393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~--~L-----~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~ 465 (552)
.=.....-+.+++-.-+......++ .+..++. ++ .++.-.+|..+|+|++|-++..-+..
T Consensus 429 ~G~~I~eQi~Dv~iRV~~iR~fsV~----~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~--------- 495 (877)
T KOG1059|consen 429 HGSLIAEQIIDVAIRVPSIRPFSVS----QMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP--------- 495 (877)
T ss_pred hhhHHHHHHHHHheechhhhHhHHH----HHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---------
Confidence 0011111112222211111111111 0111111 11 11124578889999999877532211
Q ss_pred HhhhhhhHHHHHHhhcC---C--ChhHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHH
Q 008827 466 LRAENKAQSCIIKFLQS---N--DSRLRTAAVWAVLNLTCSSS-PGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKT 539 (552)
Q Consensus 466 ~~~~~~~v~~Lv~lL~~---~--~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~ 539 (552)
.+.+..+.+--.+ + ..-...+.....++++.... ....+....+. .-++..|-++..+.+.+|||||..
T Consensus 496 ----~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~-~~i~~~l~qf~~s~d~EvQERA~~ 570 (877)
T KOG1059|consen 496 ----NDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLV-NLILSFLEQFSGSSDLEVQERASE 570 (877)
T ss_pred ----HHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHH-HHHHHHhhcccCccchhHHHHHHH
Confidence 2222222221111 1 11122344445555553211 12334445552 234566666777788999999999
Q ss_pred HHHHHhhh
Q 008827 540 ALEQFNSF 547 (552)
Q Consensus 540 al~~~~~~ 547 (552)
++..+.-.
T Consensus 571 ~~~li~~i 578 (877)
T KOG1059|consen 571 VLELIRLI 578 (877)
T ss_pred HHHHHHHH
Confidence 98776543
No 53
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.05 E-value=1.2e-06 Score=91.22 Aligned_cols=465 Identities=12% Similarity=0.075 Sum_probs=239.8
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCc------
Q 008827 5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGV------ 78 (552)
Q Consensus 5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~------ 78 (552)
+++...+..++..+..+..+.......-.-....++++.-..++.+.+...|.-+...+++.-.....=...++
T Consensus 489 Ssss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~ 568 (1233)
T KOG1824|consen 489 SSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKT 568 (1233)
T ss_pred cchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHH
Confidence 55667778888888887655422211112234556677777778888877776666666542110000000111
Q ss_pred -hHHHHHhhcC---CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH-HHh-cCChhhHHHHHHHHHHHhhhC
Q 008827 79 -LKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE-IVK-DRFARTRLLASLCLIVIRNAS 152 (552)
Q Consensus 79 -i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~-~~~~~vr~~A~~~L~~l~~~~ 152 (552)
.....+.|+. +.+||+.|..|++.+...-.+.. +.-++..+. +++ =.+...|..|++++..++.+.
T Consensus 569 m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l--------~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~ 640 (1233)
T KOG1824|consen 569 MYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFL--------GNELPRTLPILLERLGNEITRLTAVKALTLIAMSP 640 (1233)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhh--------hhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc
Confidence 2223334443 45899999999998753322221 222333333 222 245778999999999988765
Q ss_pred CCcchhhhhHHhHHHHHHHhcCCCC-chhchHHHHHHHhhcCCHHH-HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827 153 PCYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDM-QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA 230 (552)
Q Consensus 153 ~~~~~~~~~~~g~i~~Lv~ll~~~~-~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a 230 (552)
-.- -..-+-..++|.+..++.... ..+.....++-.+....... ....++ ..+..+-.++..+ +-.+-+.++..
T Consensus 641 l~i-~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lises--dlhvt~~a~~~ 716 (1233)
T KOG1824|consen 641 LDI-DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISES--DLHVTQLAVAF 716 (1233)
T ss_pred cee-ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHH--HHHHHHHHHHH
Confidence 321 112334568888888887433 34444444444444322110 000111 0111222222222 23445556666
Q ss_pred HHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH------------------------------------------HHH--
Q 008827 231 LADMCSKLECCRSRCLSLQVLKLVVDALAHDSS------------------------------------------DVR-- 266 (552)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~------------------------------------------~v~-- 266 (552)
+..+....+.. ..-....+++.++.+++++-- .+.
T Consensus 717 L~tl~~~~ps~-l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kq 795 (1233)
T KOG1824|consen 717 LTTLAIIQPSS-LLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQ 795 (1233)
T ss_pred HHHHHhcccHH-HHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHH
Confidence 66555433322 111223345555555443210 111
Q ss_pred --HHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHh
Q 008827 267 --SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 342 (552)
Q Consensus 267 --~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~l 342 (552)
...+.|...++...++ ........|.+=+. ..+..++..|.-.++.+-......- ..+.-..+++-
T Consensus 796 a~~siA~cvA~Lt~~~~~------~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iiea 865 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQ------KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEA 865 (1233)
T ss_pred HHHHHHHHHHHHHHhccc------cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHH
Confidence 1122233333222111 01122333443333 3456777888888887765443221 12333467788
Q ss_pred hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh---------cHHHHHhhhcCCChh----HHHHHHHHHHHhhcCCc
Q 008827 343 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL---------TASLLASLICDPEPS----VQEQALALVRNLVDGRI 409 (552)
Q Consensus 343 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~---------~~~~l~~ll~~~~~~----v~~~a~~~L~~l~~~~~ 409 (552)
+.+++++++.+|..||++++.+.-+..-..+.+.. .+-.+.+.+.+.+.+ ..+..-..|.+-|.+..
T Consensus 866 f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e 945 (1233)
T KOG1824|consen 866 FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE 945 (1233)
T ss_pred cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch
Confidence 99999999999999999998865444333332211 111122222221111 11112222222233333
Q ss_pred chHHHHHhh-cC--------chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 008827 410 NSVEYIFAE-DG--------IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 480 (552)
Q Consensus 410 ~~~~~i~~~-~~--------~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL 480 (552)
+....++.| .| .+++.|-..+.+ +.+..+..+..++.......+...+.++. ..+.....++
T Consensus 946 egtR~vvAECLGkL~l~epesLlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~~lk--------~~ig~fl~~~ 1016 (1233)
T KOG1824|consen 946 EGTRNVVAECLGKLVLIEPESLLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDPLLK--------QQIGDFLKLL 1016 (1233)
T ss_pred hhhHHHHHHHhhhHHhCChHHHHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCHHHH--------HHHHHHHHHH
Confidence 333333222 11 156777666666 78888888888887766655544554543 3335667888
Q ss_pred cCCChhHHHHHHHHHHhhcCC
Q 008827 481 QSNDSRLRTAAVWAVLNLTCS 501 (552)
Q Consensus 481 ~~~~~~~~~~a~~~l~~l~~~ 501 (552)
+++|.+||..|..++...+.+
T Consensus 1017 ~dpDl~VrrvaLvv~nSaahN 1037 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAAHN 1037 (1233)
T ss_pred hCCchhHHHHHHHHHHHHHcc
Confidence 999999999999999999974
No 54
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.2e-06 Score=85.86 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=150.8
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-----HH-
Q 008827 255 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-----RS- 328 (552)
Q Consensus 255 v~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-----~~- 328 (552)
-.+|.+.++.|..+++.+.+.++-.. ....++++|+++|.+. .++|......+..++...+.. +.
T Consensus 293 kpLl~S~n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsF 363 (968)
T KOG1060|consen 293 KPLLQSRNPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSF 363 (968)
T ss_pred cHHHhcCCcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhce
Confidence 34556788899999999999998642 2346789999998754 455665555555554322111 00
Q ss_pred -------------------HHHhhC----cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh
Q 008827 329 -------------------TFIRLG----GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL 385 (552)
Q Consensus 329 -------------------~~~~~g----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l 385 (552)
.+.+.+ +++-+-.+.++.+..+...++.+++.++.... -+....++.|+.+
T Consensus 364 fv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~------sv~~tCL~gLv~L 437 (968)
T KOG1060|consen 364 FVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG------SVTDTCLNGLVQL 437 (968)
T ss_pred EeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC------chhhHHHHHHHHH
Confidence 112222 23333344566666677777788877764321 1223457789999
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827 386 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL 465 (552)
Q Consensus 386 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~ 465 (552)
+.+.|..|...+...++.+...+|..... ++..|.+++.+..-+.-+...+|.++-.+.. .-.|.
T Consensus 438 lsshde~Vv~eaV~vIk~Llq~~p~~h~~-------ii~~La~lldti~vp~ARA~IiWLige~~e~----vpri~---- 502 (968)
T KOG1060|consen 438 LSSHDELVVAEAVVVIKRLLQKDPAEHLE-------ILFQLARLLDTILVPAARAGIIWLIGEYCEI----VPRIA---- 502 (968)
T ss_pred HhcccchhHHHHHHHHHHHHhhChHHHHH-------HHHHHHHHhhhhhhhhhhceeeeeehhhhhh----cchhc----
Confidence 99999999999999999999887643222 4556667776644566677788888765542 11222
Q ss_pred HhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhh-cCCCccHHHHHHH
Q 008827 466 LRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-NDPCLDVKLRVKT 539 (552)
Q Consensus 466 ~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~~~~~~v~~~a~~ 539 (552)
.+++..+.+-..+....+|.+.......+-.. ..++.+.+ .....++. .|.+-|+|+++..
T Consensus 503 ----PDVLR~laksFs~E~~evKlQILnL~aKLyl~----~~~~~kll-----~~Yv~~L~~yD~sYDiRDRaRF 564 (968)
T KOG1060|consen 503 ----PDVLRKLAKSFSDEGDEVKLQILNLSAKLYLT----NIDQTKLL-----VQYVFELARYDLSYDIRDRARF 564 (968)
T ss_pred ----hHHHHHHHHhhccccchhhHHHHHhhhhheEe----chhhHHHH-----HHHHHHHhccCCCcchhHHHHH
Confidence 46667777777888888888887777666531 22222222 12223332 3677888888654
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.3e-06 Score=88.08 Aligned_cols=370 Identities=17% Similarity=0.137 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHH
Q 008827 90 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL 169 (552)
Q Consensus 90 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~L 169 (552)
.-+.-.|+.+|++++. ++..+ +..|.+-+++++.++.+|..|+.|...+.+..++ ..+.+++..
T Consensus 121 q~vVglAL~alg~i~s--~Emar--------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~------l~e~f~~~~ 184 (866)
T KOG1062|consen 121 QYVVGLALCALGNICS--PEMAR--------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD------LVEHFVIAF 184 (866)
T ss_pred eeehHHHHHHhhccCC--HHHhH--------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch------HHHHhhHHH
Confidence 3566788999999874 34432 3457788899999999999999999999886554 234577778
Q ss_pred HHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-------------CChhhHHHHHHHHHHhh
Q 008827 170 LELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-------------LHPRRFEGILLALADMC 235 (552)
Q Consensus 170 v~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-------------~~~~~~~~a~~aL~~l~ 235 (552)
.++|.+ +.-|.......+..+...+++.-...-+ .++.|+..|++-. .+|-++-.+++.|.-|.
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 888874 4567777777777777766653332222 5667777665421 34567778888888887
Q ss_pred cCChhHHHHHHh--------------cc---cHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccc-cccchhh--------
Q 008827 236 SKLECCRSRCLS--------------LQ---VLKLVVDALA-HDSSDVRSAACMCLRSVSRSIK-NLSAGSF-------- 288 (552)
Q Consensus 236 ~~~~~~~~~~~~--------------~~---~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~-~~~~~~~-------- 288 (552)
.++++..+.+.+ .| +.+.+...+. .++..+|..|+.+|+.+-.+.+ +++...+
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ 342 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc
Confidence 766655443332 11 2222222232 3567778888888887744322 2221100
Q ss_pred hccCcH----HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc
Q 008827 289 MNETIV----IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL 364 (552)
Q Consensus 289 ~~~~~i----~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 364 (552)
.+...+ ..++..|+|+|+.++..|...+.-++.. .+.+ ..++.|+.+|.+.+++.+...+.-+..++..
T Consensus 343 ~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 343 QDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVR------VMVKELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred CCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 111111 2466777888888888888877766643 2222 4567888889888888988888888877765
Q ss_pred CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh-cCCcchHHHHHhhcCchHHHHH-HHhcccCchhHHHHH
Q 008827 365 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV-DGRINSVEYIFAEDGIILDAVG-RQLRIASKAEIEIQG 442 (552)
Q Consensus 365 ~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~i~~~~~~~~~~l~-~~L~~~~~~~v~~~a 442 (552)
-.|+.+= .++.+.+.+...-.-|...+...+-.+. .+.++.-.+.+.. .+..+. ..+....++.....+
T Consensus 416 faP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~r---Ly~a~~~~~~~~is~e~l~qVa 486 (866)
T KOG1062|consen 416 FAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLR---LYLALSEDTLLDISQEPLLQVA 486 (866)
T ss_pred cCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHH---HHHHHhhhhhhhhhhhhHHHHH
Confidence 4443221 1233333333222222222222221121 1111111111110 000000 001111455667889
Q ss_pred HHHHHhhcC----CC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcC--CChhHHHHHHHHHHhhcC
Q 008827 443 MYVLGNVAT----GK-ESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 443 ~~~L~~la~----~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~--~~~~~~~~a~~~l~~l~~ 500 (552)
.|+|+-... +. +..-..+- +..++..|.+++.+ .+...+--|..++..|..
T Consensus 487 ~W~IGEYGdlll~~~~~~~p~~vt-------esdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 487 SWCIGEYGDLLLDGANEEEPIKVT-------ESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHHhhhhhHHhhcCccccCCCcCC-------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 999997652 11 10000111 25666777777765 356788888888888874
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.6e-08 Score=91.23 Aligned_cols=188 Identities=15% Similarity=0.086 Sum_probs=153.2
Q ss_pred cCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHH
Q 008827 132 DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKL 210 (552)
Q Consensus 132 ~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 210 (552)
+.+++-+..|..-|..+...-++ ...+...|+++.++.+++ .+..+|..|+++++..++++|..+..+.+.|++++|
T Consensus 94 s~~le~ke~ald~Le~lve~iDn--Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDN--ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhh--HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45667777787777777665432 345777788888888888 457899999999999999999999999999999999
Q ss_pred HHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC--CCHHHHHHHHHHHHHhhcccccccchhh
Q 008827 211 YNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSF 288 (552)
Q Consensus 211 ~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~ 288 (552)
+..|... .+...+..|+.|++++-++++.....+...+++..|...+++ .+..++..++..+..+.......+.. +
T Consensus 172 l~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~-~ 249 (342)
T KOG2160|consen 172 LKILSSD-DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI-A 249 (342)
T ss_pred HHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH-H
Confidence 9999865 456678999999999999999998999999999999999998 56788899999999997764443333 5
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 323 (552)
...++...+..+....+.++.+.+..++..+....
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 55677777777777888899999998887766543
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.7e-06 Score=87.59 Aligned_cols=401 Identities=14% Similarity=0.163 Sum_probs=226.6
Q ss_pred HHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccC
Q 008827 41 LLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDT 119 (552)
Q Consensus 41 l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 119 (552)
+..=|++++.-++..|..+|.++|...-.|+ ..|-+.+++++ ++-+|.+|+.|...+-.-.|+...
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e------- 178 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE------- 178 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-------
Confidence 3334455666778888888888885333344 23556667776 678999999999888766666542
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---------C-------CCchhchH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---------D-------PGRVGDEA 183 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---------~-------~~~v~~~a 183 (552)
..++...+++.+.+.-|-..++..+..++..+++ ..+.+ ...++-|+..|+ + +|-+|...
T Consensus 179 -~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~~f--r~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 179 -HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALSYF--RDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred -HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHHHH--HHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 3345556677777777777777777777775442 12222 125555655553 0 01235556
Q ss_pred HHHHHHhhcCCHHHHHHHHH--------------------hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827 184 SFAFSSLIAEKEDMQKLAFE--------------------VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS 243 (552)
Q Consensus 184 ~~~L~~l~~~~~~~~~~~~~--------------------~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~ 243 (552)
...|.-+..++++....+.+ -.++..++.+ . .++.+|+.|+.+|+.+..+.+.+-+
T Consensus 255 LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I-~---~~~~LrvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 255 LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI-R---SNSGLRVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc-c---CCchHHHHHHHHHHHHhcCCcccee
Confidence 66665555554443222211 0123333332 1 2355788888888877665443321
Q ss_pred HH--------Hh--c----ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHH
Q 008827 244 RC--------LS--L----QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 309 (552)
Q Consensus 244 ~~--------~~--~----~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~ 309 (552)
.+ +. . .==..++++|++++..+|+.|...+..|... .+.+ ..+..|+.+|...+++.+
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~-------~mv~eLl~fL~~~d~~~k 402 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVR-------VMVKELLEFLESSDEDFK 402 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHH-------HHHHHHHHHHHhccHHHH
Confidence 11 11 1 1234578999999999999999999999876 4544 346789999988899999
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHH----HHHhhcHHHHHhh
Q 008827 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEE----IFMELTASLLASL 385 (552)
Q Consensus 310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~----i~~~~~~~~l~~l 385 (552)
...+.-+..++..+.+.+.+.++ .+.+.+...-.-++......+..+..+..++.... +........ +
T Consensus 403 ~~~as~I~~laEkfaP~k~W~id-----tml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~---~ 474 (866)
T KOG1062|consen 403 ADIASKIAELAEKFAPDKRWHID-----TMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT---L 474 (866)
T ss_pred HHHHHHHHHHHHhcCCcchhHHH-----HHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh---h
Confidence 99999999999888776655442 33333333221222222222222222111111111 111111111 2
Q ss_pred hcCCChhHHHHHHHHHHHhhc----CCcc-hHHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChhhHHH
Q 008827 386 ICDPEPSVQEQALALVRNLVD----GRIN-SVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEA 459 (552)
Q Consensus 386 l~~~~~~v~~~a~~~L~~l~~----~~~~-~~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~~~~~ 459 (552)
+.-+.+.+...+.|+++.... +..+ .-..+-++. ++..+...+.++ .+..++..++.++..+++........
T Consensus 475 ~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesd--ivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~r 552 (866)
T KOG1062|consen 475 LDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESD--IVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSER 552 (866)
T ss_pred hhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHH
Confidence 223445567788899886541 1000 000111111 566666666553 45778999999999998855432211
Q ss_pred HHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHH
Q 008827 460 VMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV 492 (552)
Q Consensus 460 i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~ 492 (552)
+ -..+..+..+-|.++|..|.
T Consensus 553 i------------~~lI~~~~~s~~~elQQRa~ 573 (866)
T KOG1062|consen 553 I------------KQLISSYKSSLDTELQQRAV 573 (866)
T ss_pred H------------HHHHHHhcccccHHHHHHHH
Confidence 1 12334455566666666654
No 58
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=4.1e-07 Score=93.47 Aligned_cols=406 Identities=18% Similarity=0.213 Sum_probs=242.9
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 008827 39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 117 (552)
Q Consensus 39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 117 (552)
+.++......+-......-..+.+.+....... .+++..++.=..+ ++.+|..|+++++.+-.+ ...
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~------ 119 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KIT------ 119 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCchHH----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHH------
Confidence 334444444444444555555555544332211 1222222222222 456777666666654321 111
Q ss_pred cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHH
Q 008827 118 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKED 196 (552)
Q Consensus 118 ~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~ 196 (552)
+-...++.+.++++++.+|..|+-+...+...+. +.+...|.++.|..++. +++.|-..|..+|..+...++.
T Consensus 120 --ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~----~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 120 --EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP----DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred --HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh----hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 2356778899999999999999999999887543 44667899999999998 4567888888888888765543
Q ss_pred HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827 197 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 197 ~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l 276 (552)
....-.....+..++..+...+ +.. +-..+.++..-..+++ +. ....+..+...|.+.++.+...+.+.+..+
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~-EW~-qi~IL~~l~~y~p~d~--~e---a~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECT-EWG-QIFILDCLAEYVPKDS--RE---AEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhh-hhh-HHHHHHHHHhcCCCCc--hh---HHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 1111111122334444443331 121 2233344443332222 11 113577888899999999999999999998
Q ss_pred hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-H------------HHHhh----------
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-S------------TFIRL---------- 333 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~------------~~~~~---------- 333 (552)
.....+... .....+.++++.++..+. +++..|..-+.-+....+..- . ..++.
T Consensus 267 ~~~~~~~~~--~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la 343 (734)
T KOG1061|consen 267 VKYLKQVNE--LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELA 343 (734)
T ss_pred HHHHHHHHH--HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHh
Confidence 776555322 355677889999998776 888888877765554333211 0 00111
Q ss_pred ---C---cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 334 ---G---GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 334 ---g---~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
+ .+.-+.++...-+.+.-..+++++++++...+. . .+.++.+++++......+...+...++++...
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~----~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ----S---NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh----h---hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 1 222233333344677788899999998763321 1 45688889999876667777777788888877
Q ss_pred CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhH
Q 008827 408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487 (552)
Q Consensus 408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~ 487 (552)
.|...+.+.. .+...+.+-.+|+.+.+-.|+++..+..-++ .. .++..+++-..+....+
T Consensus 417 yP~~~~~vv~-------~l~~~~~sl~epeak~amiWilg~y~~~i~~-a~------------elL~~f~en~~dE~~~V 476 (734)
T KOG1061|consen 417 YPNKYESVVA-------ILCENLDSLQEPEAKAALIWILGEYAERIEN-AL------------ELLESFLENFKDETAEV 476 (734)
T ss_pred CCCchhhhhh-------hhcccccccCChHHHHHHHHHHhhhhhccCc-HH------------HHHHHHHhhcccchHHH
Confidence 6655444433 3333344446789999999999987764332 11 12233445555666777
Q ss_pred HHHHHHHHHhhc
Q 008827 488 RTAAVWAVLNLT 499 (552)
Q Consensus 488 ~~~a~~~l~~l~ 499 (552)
+..-..+...+-
T Consensus 477 ql~LLta~ik~F 488 (734)
T KOG1061|consen 477 QLELLTAAIKLF 488 (734)
T ss_pred HHHHHHHHHHHH
Confidence 777666666644
No 59
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.92 E-value=4.3e-06 Score=82.82 Aligned_cols=479 Identities=15% Similarity=0.134 Sum_probs=255.4
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCcccc-cccchH---HHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHH
Q 008827 6 SYMEVVDAGARSLKMIYQSKMAPKYDFL-QEENME---FLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKR 81 (552)
Q Consensus 6 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~---~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~ 81 (552)
+++---+.|.+.|.+++..-..+ +.+ +..+-. .+..++++.++..+.++..++.++++..+... -+...
T Consensus 33 ~Spvs~r~~r~lls~l~yll~tg--e~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl-----m~tss 105 (898)
T COG5240 33 KSPVSTRSARKLLSNLFYLLSTG--ELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL-----MGTSS 105 (898)
T ss_pred cCCCChHHHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh-----HHHHH
Confidence 33444566777777764332222 333 333333 35566678899999999999998886443211 12334
Q ss_pred HHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHH-HHHhcCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827 82 LTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCII-EIVKDRFARTRLLASLCLIVIRNASPCYLQD 158 (552)
Q Consensus 82 L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~-~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~ 158 (552)
+..=+.+ ...++-.|++.|..+...+... .+ ..++ ...=+..+.++.+|+..-+.+.-.+.. +
T Consensus 106 iMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~--~~---------er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~--~- 171 (898)
T COG5240 106 IMKDLNGGVPDDVKPMAIRSLFSVIDGETVY--DF---------ERYLNQAFVSTSMARRSAALVVAYHLLPNNFN--Q- 171 (898)
T ss_pred HHHhhccCCccccccHHHHHHHHhcCcchhh--hH---------HHHhhhhccccchhhhhhHHHHhhhhccccHH--H-
Confidence 4444443 3478888999988865432111 11 1111 122356666777766655555433211 0
Q ss_pred hhhH-HhHHHHHHHhcC----------CC--Cc-hhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhH
Q 008827 159 VGIK-TKLINNLLELLD----------DP--GR-VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF 224 (552)
Q Consensus 159 ~~~~-~g~i~~Lv~ll~----------~~--~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~ 224 (552)
.-++ ...-+....+-+ ++ .. .+..|.+.|.++-..+. -+.-++++.+..+. ...-+
T Consensus 172 ~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk---------ma~lklv~hf~~n~-smknq 241 (898)
T COG5240 172 TKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK---------MAQLKLVEHFRGNA-SMKNQ 241 (898)
T ss_pred HHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH---------HHHHHHHHHhhccc-ccccc
Confidence 0001 011111111211 11 11 25666666665543321 12346666666542 11111
Q ss_pred H---HHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh
Q 008827 225 E---GILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL 301 (552)
Q Consensus 225 ~---~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL 301 (552)
. -.+++...+...++..+. +..|.|-..+++.-..|...++.++..++.. +.... ++ ...+..|-.+|
T Consensus 242 ~a~V~lvr~~~~ll~~n~q~~~-----q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~--nv~~~-~~-~~~vs~L~~fL 312 (898)
T COG5240 242 LAGVLLVRATVELLKENSQALL-----QLRPFLNSWLSDKFEMVFLEAARAVCALSEE--NVGSQ-FV-DQTVSSLRTFL 312 (898)
T ss_pred hhheehHHHHHHHHHhChHHHH-----HHHHHHHHHhcCcchhhhHHHHHHHHHHHHh--ccCHH-HH-HHHHHHHHHHH
Confidence 1 123444444444444333 3578888888888899999999999888764 22222 22 24566677778
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHH
Q 008827 302 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 381 (552)
Q Consensus 302 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~ 381 (552)
.++....|..|.+.|..++...+. .+. -+=+.+-.+..+.|..+...|+.+|-.- ...+.-.+ .+..
T Consensus 313 ~s~rv~~rFsA~Riln~lam~~P~---kv~--vcN~evEsLIsd~Nr~IstyAITtLLKT---Gt~e~idr-----Lv~~ 379 (898)
T COG5240 313 KSTRVVLRFSAMRILNQLAMKYPQ---KVS--VCNKEVESLISDENRTISTYAITTLLKT---GTEETIDR-----LVNL 379 (898)
T ss_pred hcchHHHHHHHHHHHHHHHhhCCc---eee--ecChhHHHHhhcccccchHHHHHHHHHc---CchhhHHH-----HHHH
Confidence 889999999999999999876553 111 1123444566677766666666655433 22222222 2344
Q ss_pred HHhhhcCCChhHHHHHHHHHHHhhcCCcchH--------HHHHhhcCc-----hHHHHHHHhcccCchhHHHHHHHHHHh
Q 008827 382 LASLICDPEPSVQEQALALVRNLVDGRINSV--------EYIFAEDGI-----ILDAVGRQLRIASKAEIEIQGMYVLGN 448 (552)
Q Consensus 382 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--------~~i~~~~~~-----~~~~l~~~L~~~~~~~v~~~a~~~L~~ 448 (552)
+..++.+-+...+.-++.+++.++..-|... ..+.++||. +++.+.+.+. ..|+-++.++..|+.
T Consensus 380 I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~ 457 (898)
T COG5240 380 IPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCT 457 (898)
T ss_pred HHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHH
Confidence 5555555555555555666666664433211 122333432 3444444443 234445555555544
Q ss_pred hcCCChhhHHH--HHHHhhHh------hhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHH
Q 008827 449 VATGKESHKEA--VMDQLLLR------AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS 520 (552)
Q Consensus 449 la~~~~~~~~~--i~~~~~~~------~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~ 520 (552)
+...++.+.-. |+. ++.. ....++.++..-+--.|..+|.+|+.+|+.++.+.++....+ .+.-
T Consensus 458 fIEDcey~~I~vrIL~-iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~-------sv~~ 529 (898)
T COG5240 458 FIEDCEYHQITVRILG-ILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ-------SVEN 529 (898)
T ss_pred HHhhcchhHHHHHHHH-HhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH-------HHHH
Confidence 44433321110 110 0000 001123333333333577899999999999998654333222 2345
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 521 HVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 521 ~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
.|.+.++|.+.+||++|..+++++...
T Consensus 530 ~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 530 ALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 677889999999999999999988643
No 60
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.2e-07 Score=89.39 Aligned_cols=189 Identities=19% Similarity=0.206 Sum_probs=151.8
Q ss_pred hhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCc
Q 008827 214 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 293 (552)
Q Consensus 214 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~ 293 (552)
+..+..+++-++.|+.-|..++. +-++...+...|++..++.++++++..+|..|+++|+..+++.+..... +.+.|+
T Consensus 90 ~~~~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~-v~E~~~ 167 (342)
T KOG2160|consen 90 LNSSSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQ-VIELGA 167 (342)
T ss_pred cCcccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHccc
Confidence 34344567788999999998885 3456677889999999999999999999999999999999987776666 889999
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhH
Q 008827 294 VIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCK 370 (552)
Q Consensus 294 i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~ 370 (552)
.+.|+..+.. ++..++..|..|++.+..++.+....+...++...|...+++ .+...+..++..+..+..... ..+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~ 246 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDE 246 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhh
Confidence 9999999974 456788999999999999999999899999999999999998 567788889999999876432 233
Q ss_pred HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 371 EEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 371 ~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
..+-..+....+..+..+.+.++.+.++.++..+.
T Consensus 247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 33334444555566667778888888887766654
No 61
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=1.2e-06 Score=92.62 Aligned_cols=394 Identities=16% Similarity=0.119 Sum_probs=232.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHH
Q 008827 124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAF 202 (552)
Q Consensus 124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~ 202 (552)
+..-++.++..+.+|..++.-+++++..-. ......+.+|.+.++..++ ..||..|...+.++...-..- .-.
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~----~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~--~d~ 313 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLE----SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD--DDV 313 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHHH----HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc--hhh
Confidence 344568899999999999999999988643 3566788999999999854 567877776666554311100 011
Q ss_pred HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc
Q 008827 203 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 282 (552)
Q Consensus 203 ~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~ 282 (552)
.....+.+++...+.+ ..++.........+.. ..-.........+....++++..++++.+...-...++.....
T Consensus 314 ~~~~~~~l~~~~~d~~--~~v~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGS--WRVSYMVADKFSELSS---AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred hhhhhHHHHHHhcChh--HHHHHHHhhhhhhHHH---HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence 2234566666555442 5555555555444442 1111222335688899999999999999998877777655332
Q ss_pred ccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 283 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 283 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
.+...+....++|.+-.+..+.+..++.+.+..+.++..-.+.. . .-....|.++..+++..+.++.+..+.+..+-
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~-ti~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--R-TISELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--c-CccccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 22222556677888888888999999999888888775443311 1 11346677888889999999999998776553
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH
Q 008827 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG 442 (552)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a 442 (552)
... ............++.+..+-.+..+.++...++.+.-++...- ..++.+. .-+.+...+.+ ...+++.+|
T Consensus 466 ~v~-~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~--~~~l~~~~l~d-~v~~Ir~~a 538 (759)
T KOG0211|consen 466 EVN-DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEK--LAELLRTWLPD-HVYSIREAA 538 (759)
T ss_pred hcc-CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHH--HHHHHHhhhhh-hHHHHHHHH
Confidence 211 1223333444456666666666667777766666655543211 0111110 11111111221 223444444
Q ss_pred HHHHHhhcC--CChhhHHHHHHHhhH---------------------------hhhhhhHHHHHHhhcCCChhHHHHHHH
Q 008827 443 MYVLGNVAT--GKESHKEAVMDQLLL---------------------------RAENKAQSCIIKFLQSNDSRLRTAAVW 493 (552)
Q Consensus 443 ~~~L~~la~--~~~~~~~~i~~~~~~---------------------------~~~~~~v~~Lv~lL~~~~~~~~~~a~~ 493 (552)
+..+..++. |.++.+..++...+. -....++|.+..+..++.++||.+++.
T Consensus 539 a~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak 618 (759)
T KOG0211|consen 539 ARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAK 618 (759)
T ss_pred HHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHH
Confidence 444433332 211222111110000 001345566667777777777777777
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827 494 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 545 (552)
Q Consensus 494 ~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~ 545 (552)
.+-.+.. . -....++..+.+.+..+.+|++.++|-+|..|++.+.
T Consensus 619 ~L~~i~~----~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 619 HLPKILK----L---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHHHh----h---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 7777763 1 1223445555666677777777788888777777654
No 62
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.5e-06 Score=84.91 Aligned_cols=368 Identities=14% Similarity=0.110 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHH
Q 008827 90 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL 169 (552)
Q Consensus 90 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~L 169 (552)
+.+|.+.+.--+.++++-....... ...+..++.-++.+...+|...+.||..+....... ....+.+.+
T Consensus 70 ~~~~~~~~v~~~~~a~~~~~~d~~~-----~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-----~~~~~l~~l 139 (569)
T KOG1242|consen 70 DNLRNNVVVLEGTLAFHLQIVDPRP-----ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-----SGEYVLELL 139 (569)
T ss_pred HHHhhhhHHHHHHHHHhccccCcch-----hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-----CHHHHHHHH
Confidence 4667666666666665432221111 223444566677888999999999998877644322 224577888
Q ss_pred HHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhc
Q 008827 170 LELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 248 (552)
Q Consensus 170 v~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~ 248 (552)
.++++. .-.-+..++..++.+..+..- ....+.+.+..+-+.+.+.. ....++.+..+....+.+-- ...+.
T Consensus 140 ~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg----~~~EP 212 (569)
T KOG1242|consen 140 LELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLG----PPFEP 212 (569)
T ss_pred HHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcC----CCCCc
Confidence 888873 234577888888888766543 23345566677777666552 34445444433333322110 01122
Q ss_pred ---ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch
Q 008827 249 ---QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT 325 (552)
Q Consensus 249 ---~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~ 325 (552)
..+|.++.-..+....||.+|..+...+-+..+.. .-..++|+++.-+.+..+....+++..++.++... +
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-----aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p 286 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-----AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-P 286 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-h
Confidence 24666666667888999999999988886654322 22355677776666568888999999999887543 3
Q ss_pred hHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 326 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 326 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
..-...-..++|.+.+.|.+..+++|..+..++..++.-.++ .+ | ...++.|++.+.+++.++.+..-.+...-+
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN--~d-I--~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN--PD-I--QKIIPTLLDALADPSCYTPECLDSLGATTF 361 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--HH-H--HHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence 333455578999999999999999999999999998764332 11 1 125677888888777554433222211111
Q ss_pred cCCcchHHHHHhh-cCchHHHHHHHhcccCchhHHHHHHHHHHhhcCC--ChhhHHHHHHHhhHhhhhhhHHHHHHhhcC
Q 008827 406 DGRINSVEYIFAE-DGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG--KESHKEAVMDQLLLRAENKAQSCIIKFLQS 482 (552)
Q Consensus 406 ~~~~~~~~~i~~~-~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~--~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~ 482 (552)
+.++-.. ...+++.+.+-+.. .+.++++.++.++.|++.- ++.....++. .++|-+-..+.+
T Consensus 362 ------V~~V~~psLalmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveDp~~lapfl~--------~Llp~lk~~~~d 426 (569)
T KOG1242|consen 362 ------VAEVDAPSLALMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP--------SLLPGLKENLDD 426 (569)
T ss_pred ------eeeecchhHHHHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcCHHHHhhhHH--------HHhhHHHHHhcC
Confidence 0011000 01156777777766 7788899999999999973 3433444442 455667777788
Q ss_pred CChhHHHHHHHHHHhhcC
Q 008827 483 NDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 483 ~~~~~~~~a~~~l~~l~~ 500 (552)
..+++|..++.+|+.+..
T Consensus 427 ~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 427 AVPEVRAVAARALGALLE 444 (569)
T ss_pred CChhHHHHHHHHHHHHHH
Confidence 899999999999987774
No 63
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.88 E-value=2.6e-06 Score=88.98 Aligned_cols=488 Identities=15% Similarity=0.135 Sum_probs=263.4
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChh-hH------HHHHhcCch
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL-EQ------KLLFDAGVL 79 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~-~~------~~l~~~g~i 79 (552)
+=++.++|++|+..+-.+..---.++++ ..=|.+++-++..+++|+.....+...+-+... .. +... .|+.
T Consensus 345 SWkVRRaAaKcl~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e-~~g~ 422 (1233)
T KOG1824|consen 345 SWKVRRAAAKCLEAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAME-QGGT 422 (1233)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhh-ccCC
Confidence 3478999999999886554211123333 344677777777777777666555544322111 00 1111 1333
Q ss_pred H-----------HHHHhhc----C-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHh--cCChhhHHHH
Q 008827 80 K-----------RLTSLLG----G-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVK--DRFARTRLLA 141 (552)
Q Consensus 80 ~-----------~L~~lL~----~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~vr~~A 141 (552)
+ .+++.+. . +.+-+..++..|..+..-.++.... .-...++.+...+. +.....+..+
T Consensus 423 ~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~----~~~slvpgI~~~l~DkSsss~~ki~~ 498 (1233)
T KOG1824|consen 423 PSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ----HIPSLVPGIIYSLNDKSSSSNLKIDA 498 (1233)
T ss_pred ccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh----cccccchhhhhhcCCccchHHHHHHH
Confidence 3 3333332 2 2233444555555544333222111 11445677777665 4566888889
Q ss_pred HHHHHHHhhhCCCcchhhhhHHhHHHHHHHh----cCCC-CchhchHHHHHHHhhcC------------CHHHHHHHHHh
Q 008827 142 SLCLIVIRNASPCYLQDVGIKTKLINNLLEL----LDDP-GRVGDEASFAFSSLIAE------------KEDMQKLAFEV 204 (552)
Q Consensus 142 ~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~l----l~~~-~~v~~~a~~~L~~l~~~------------~~~~~~~~~~~ 204 (552)
..++.......+.+.. +..++.|... ..++ ..+-.+|..+...+... +++. .
T Consensus 499 L~fl~~~L~s~~p~~f-----hp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v-~----- 567 (1233)
T KOG1824|consen 499 LVFLYSALISHPPEVF-----HPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV-K----- 567 (1233)
T ss_pred HHHHHHHHhcCChhhc-----ccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH-H-----
Confidence 9998886654432211 2233333333 3332 34555555554444321 1111 1
Q ss_pred CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC-ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc
Q 008827 205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL 283 (552)
Q Consensus 205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~ 283 (552)
..+...++.|...+.+.++++.|..+.+.+... .+..+... ...+|.+.+-| ++...|..|.+++..++.+.-.+
T Consensus 568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHH--hchhHHHHHHHHHHHHHhcccee
Confidence 112344555666666788999999888876531 11111100 12445555544 45677889999999887764333
Q ss_pred cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827 284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363 (552)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 363 (552)
.-. -.-..+++.+.++++......+.....++-.++..+......-.-.-++..+..++..++-.+-..|+..|..++.
T Consensus 644 ~l~-~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 644 DLS-PVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred ehh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 211 2345678888888887767777777777777765443322222222344555566777778888889999988876
Q ss_pred cCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh----cCCcchHHHHHhhcCchHHHHHHHhcccCc----
Q 008827 364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV----DGRINSVEYIFAEDGIILDAVGRQLRIASK---- 435 (552)
Q Consensus 364 ~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~----~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~---- 435 (552)
..+ ..........++.++.+++++- +|..++..+-++. .+++.... +..+...+.. |.
T Consensus 723 ~~p--s~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~---------y~~l~s~lt~-PV~~~~ 788 (1233)
T KOG1824|consen 723 IQP--SSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLD---------YISLLSLLTA-PVYEQV 788 (1233)
T ss_pred ccc--HHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCcc---------HHHHHHHHcC-Cccccc
Confidence 433 3334445567888999998754 5655555554443 22221111 2233344443 21
Q ss_pred -hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 008827 436 -AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVK 512 (552)
Q Consensus 436 -~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 512 (552)
..+..++.+.+..+++ .+...++++.......+++=++++ +...|.-|...++.+....+...
T Consensus 789 ~~~l~kqa~~siA~cvA--------~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~------ 854 (1233)
T KOG1824|consen 789 TDGLHKQAYYSIAKCVA--------ALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP------ 854 (1233)
T ss_pred ccchhHHHHHHHHHHHH--------HHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc------
Confidence 1245566665555443 111111222233334555444433 44567777777777775322111
Q ss_pred HHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 513 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 513 l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
..+.-..+.+-.+++++||+.+|..||+.+.-
T Consensus 855 --~~e~~~~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 855 --QNELKDTIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred --chhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 11223355666678888999998888887764
No 64
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.87 E-value=2.7e-06 Score=84.80 Aligned_cols=335 Identities=16% Similarity=0.151 Sum_probs=197.4
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCC-CcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHH
Q 008827 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASP-CYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQK 199 (552)
Q Consensus 122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~-~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~ 199 (552)
.++.++.++++..|.+|..|+.....++..-. ++..+... .+--.|.+.+. +++++.-....++..+.+....-.-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~--klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELA--KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHH--HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 45667789999999999999998888765332 11112222 22234566666 4566655555544443321100000
Q ss_pred HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH---HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827 200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC---RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l 276 (552)
.-=..|.+|.|..+|++. +.++..+....++-+|...+++ |.-+ .+--.|++.|++-+.++|.+|...++.+
T Consensus 683 qpPi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 683 QPPISGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred CCchhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 000246788888888875 4778888888888888766653 1111 1233467888889999999999999988
Q ss_pred hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 356 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 356 (552)
++. +.-+.++..|+.=|+..+...|.-..-+++-.+..+.+ -.++|.|+.=-..++..++...+.
T Consensus 758 s~a--------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 758 SRA--------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred Hhh--------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHH
Confidence 876 23344555555555544433333333444333322222 135666666666677888888999
Q ss_pred HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc--hHHHHHhhcCchHHHHHHHhcccC
Q 008827 357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN--SVEYIFAEDGIILDAVGRQLRIAS 434 (552)
Q Consensus 357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~~~~~~~~l~~~L~~~~ 434 (552)
+++.+........++.+. ...|.|-..|.+.|+--+.-+...++++..+.+. ..+..++ +++++..-+-. +
T Consensus 823 am~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH----LlNllwpNIle-~ 895 (975)
T COG5181 823 AMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH----LLNLLWPNILE-P 895 (975)
T ss_pred HHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH----HHHHhhhhccC-C
Confidence 998886543322333332 3567777888999999999999999999877542 2233333 34444432222 5
Q ss_pred chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 435 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 435 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.|.++....-.+-.++. ++. ...+...+.+=|-++...||+ +.|...|...
T Consensus 896 sPhvi~~~~Eg~e~~~~--------~lg------~g~~m~Yv~qGLFHPs~~VRk-~ywtvyn~my 946 (975)
T COG5181 896 SPHVIQSFDEGMESFAT--------VLG------SGAMMKYVQQGLFHPSSTVRK-RYWTVYNIMY 946 (975)
T ss_pred CcHHHHHHHHHHHHHHH--------Hhc------cHHHHHHHHHhccCchHHHHH-HHHHHHhhhh
Confidence 56655544333333221 111 011223445556677777775 4677777664
No 65
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.85 E-value=1.6e-06 Score=86.32 Aligned_cols=377 Identities=14% Similarity=0.111 Sum_probs=207.3
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-Cch--hchHHHHHHHhhcCCHHHH
Q 008827 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRV--GDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v--~~~a~~~L~~l~~~~~~~~ 198 (552)
.+..++.-.+|+...-|..++.........-+....+....+..+..+...+++. ..+ -..+..+.. .+.+.+
T Consensus 522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~----vsl~~r 597 (975)
T COG5181 522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVL----VSLEFR 597 (975)
T ss_pred HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEeccccee----eehhhc
Confidence 3455666677777777776666655544332222233444455666666666532 221 111111000 000000
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH--HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC--RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~--~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l 276 (552)
-.-+-.-.+..++..|++.+ |.+|+.|+...+.++.--..+ -+.+...| ..|.+.|....+++.-...+++..+
T Consensus 598 ~kp~l~~ivStiL~~L~~k~--p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I 673 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKP--PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSI 673 (975)
T ss_pred cCcchHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHH
Confidence 00011123456667777654 789999988888776311111 12233333 2466778888899888888888777
Q ss_pred hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---hHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVKLLVQLSKSMDSTIRLN 353 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 353 (552)
.....--.-+ ---.|++|.|.-+|++.+..++.+....++.++...+. .++++. +-=.|+.+|++.+.++|.+
T Consensus 674 ~sv~~~~~mq-pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~ 749 (975)
T COG5181 674 YSVHRFRSMQ-PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRN 749 (975)
T ss_pred hhhhcccccC-CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHh
Confidence 5442211101 12358999999999999999999999888888875544 233332 2234677888899999999
Q ss_pred HHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc
Q 008827 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA 433 (552)
Q Consensus 354 a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~ 433 (552)
|..+++.++....|. .++..|+.-|+..+...+....-+++-.+..+- .|+ +++.+..=...
T Consensus 750 A~~tfG~Is~aiGPq--------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-----pfs----VlP~lm~dY~T- 811 (975)
T COG5181 750 ATETFGCISRAIGPQ--------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-----PFS----VLPTLMSDYET- 811 (975)
T ss_pred hhhhhhhHHhhcCHH--------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-----chh----hHHHHHhcccC-
Confidence 999999887654431 122223332322222222111111111111110 011 44554443344
Q ss_pred CchhHHHHHHHHHHhhcC--CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHH
Q 008827 434 SKAEIEIQGMYVLGNVAT--GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLV 511 (552)
Q Consensus 434 ~~~~v~~~a~~~L~~la~--~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 511 (552)
|+..||...+.+++.+-. |.. .++-+ ..+.|.|-..|.+.|+..|..|...|..++.+ +.|+-.-
T Consensus 812 Pe~nVQnGvLkam~fmFeyig~~-s~dYv---------y~itPlleDAltDrD~vhRqta~nvI~Hl~Ln-c~gtg~e-- 878 (975)
T COG5181 812 PEANVQNGVLKAMCFMFEYIGQA-SLDYV---------YSITPLLEDALTDRDPVHRQTAMNVIRHLVLN-CPGTGDE-- 878 (975)
T ss_pred chhHHHHhHHHHHHHHHHHHHHH-HHHHH---------HHhhHHHHhhhcccchHHHHHHHHHHHHHhcC-CCCcccH--
Confidence 677788888888887654 111 12222 34457778888899999999999999999876 3343111
Q ss_pred HHHHCCcHHHHHhhhc----CCCccHHHHHHHHHHHHhh
Q 008827 512 KLHDAGIVSHVKNMVN----DPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 512 ~l~~~g~~~~L~~ll~----~~~~~v~~~a~~al~~~~~ 546 (552)
.+.-.|..++. +++|.+..+....++.|+.
T Consensus 879 -----da~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~ 912 (975)
T COG5181 879 -----DAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT 912 (975)
T ss_pred -----HHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence 11113333332 5667776666666655543
No 66
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=3.1e-06 Score=89.68 Aligned_cols=378 Identities=17% Similarity=0.131 Sum_probs=218.1
Q ss_pred CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHH
Q 008827 89 SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN 168 (552)
Q Consensus 89 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~ 168 (552)
++.+|..+..-++.++..-+. .. .....++.+..+.+|+...||++|...+..+....... .-......+.
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~~---~~---~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~---~d~~~~~~~~ 320 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLES---EI---VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD---DDVVKSLTES 320 (759)
T ss_pred chhhHHHHHhhhHHHHHHHHH---HH---HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc---hhhhhhhhHH
Confidence 345666666666665533211 11 12456777788999999999999999999988765331 1344668888
Q ss_pred HHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhc-CChhHHHHHH
Q 008827 169 LLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS-KLECCRSRCL 246 (552)
Q Consensus 169 Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~ 246 (552)
+++..++. ..++...+.....+...-. .......-+++....+.... ...+..+..-...++. .+...+..+.
T Consensus 321 l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~--~e~r~a~a~~~~~l~~~l~~~~~~~i~ 395 (759)
T KOG0211|consen 321 LVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEE--WEVRYAIAKKVQKLACYLNASCYPNIP 395 (759)
T ss_pred HHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchh--hhhhHHhhcchHHHhhhcCcccccccc
Confidence 88888754 3455444444333321100 00001122455555555542 3444444444444433 2223344555
Q ss_pred hcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 008827 247 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR 326 (552)
Q Consensus 247 ~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 326 (552)
....+|.+-.+..+.+..++.+.+..+..++-..+..+ .-....|.+...+++.+++++....+.+..+-...+..
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~----ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~ 471 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER----TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI 471 (759)
T ss_pred hhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc----CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence 66678999999999999999999888877754433211 12355677888999999999999998777665544444
Q ss_pred HHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827 327 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 406 (552)
Q Consensus 327 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (552)
.........++.+.++.....-.+|...++.+-.++.... ..++....-+.+..-+.+...++++.|...+.-++.
T Consensus 472 g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~----~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 472 GISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG----VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred cchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh----hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 4455666778888888877777788888877776655322 111211111111112223334455555444444432
Q ss_pred CCc--ch--------------------------HHHHHhhcCc------hHHHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827 407 GRI--NS--------------------------VEYIFAEDGI------ILDAVGRQLRIASKAEIEIQGMYVLGNVATG 452 (552)
Q Consensus 407 ~~~--~~--------------------------~~~i~~~~~~------~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~ 452 (552)
... -. +..+.+-.|. +++.+..+..+ +.++|+-+++..|..+...
T Consensus 548 ~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D-~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 548 TFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD-PVANVRINVAKHLPKILKL 626 (759)
T ss_pred HhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC-CchhhhhhHHHHHHHHHhh
Confidence 100 00 0000111110 34444444344 7778888888888776542
Q ss_pred ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 453 KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 453 ~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
-. .... +..+.|.+..+.++.+.++|..|.-+...+.
T Consensus 627 L~---~~~~-------~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 627 LD---ESVR-------DEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred cc---hHHH-------HHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 21 1122 2556678888888888899988877766554
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2.4e-05 Score=80.48 Aligned_cols=334 Identities=13% Similarity=0.142 Sum_probs=233.0
Q ss_pred ccHHHHHHHH-hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-C--CCchhchHHHHHHHhhcCCH-
Q 008827 121 RTLSCIIEIV-KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D--PGRVGDEASFAFSSLIAEKE- 195 (552)
Q Consensus 121 ~~l~~l~~ll-~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~--~~~v~~~a~~~L~~l~~~~~- 195 (552)
.+++.++.-. .+.-++-|..|++.|..+++. ++ ..+.+.++++|+..|+ + ++++...+..++.++.++++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR-~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YR-EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HH-HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 3455554432 345567799999999999884 23 3455678999999998 3 45677788888888876552
Q ss_pred -----HH----------HHHHH-HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC-ChhHHHHHHhc-ccHHHHHHh
Q 008827 196 -----DM----------QKLAF-EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLSL-QVLKLVVDA 257 (552)
Q Consensus 196 -----~~----------~~~~~-~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~-~~l~~lv~~ 257 (552)
+. ...++ ..+-|..++..+..- +..+|..++..|.++... ..+.++.+... -++..++.+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 11 11222 245677777777654 477899999999888664 45667666554 589999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCchhHHHHHhh
Q 008827 258 LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFIRL 333 (552)
Q Consensus 258 L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~~~~ 333 (552)
|.+....+|-.+...|..+++..+.+..- +.-.++...|+.+++.+ .--|...|...+-||..++..+...+.+.
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKl-VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~ 253 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKL-VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG 253 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHH-HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence 99999999999999999999987776654 55678899999999743 23678899999999999888899999999
Q ss_pred CcHHHHHHhhcC---CCH------HHH----HHHHHHHHHhcccCCh-----HhHHHHHHhhcHHHHHhhhcCC--ChhH
Q 008827 334 GGVKLLVQLSKS---MDS------TIR----LNALRALRNLIFLAED-----KCKEEIFMELTASLLASLICDP--EPSV 393 (552)
Q Consensus 334 g~i~~L~~ll~~---~~~------~v~----~~a~~aL~~l~~~~~~-----~~~~~i~~~~~~~~l~~ll~~~--~~~v 393 (552)
+-+|.|.++|.- .+. .-| ..++.++..+..-..+ .+.+.+...+++..|..++.++ ..+|
T Consensus 254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI 333 (970)
T KOG0946|consen 254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI 333 (970)
T ss_pred ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence 999999988764 221 111 1245555555442221 2345666778899999998876 4579
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhhc----C----chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHH
Q 008827 394 QEQALALVRNLVDGRINSVEYIFAED----G----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMD 462 (552)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~~i~~~~----~----~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~ 462 (552)
+..++-++.+...++.........-. . .++=++..+..+...+..|.++++++..+...+.+....++.
T Consensus 334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999999988654333322211 0 123334444444345678888888888887766655444544
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.83 E-value=2.1e-06 Score=85.75 Aligned_cols=244 Identities=18% Similarity=0.095 Sum_probs=167.2
Q ss_pred CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827 205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 284 (552)
Q Consensus 205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~ 284 (552)
.+++.++..|... .++.++..+..++... +++. .+..++..|.+.++.++..+..+|..+
T Consensus 54 ~a~~~L~~aL~~d-~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 54 AATELLVSALAEA-DEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL-------- 113 (410)
T ss_pred hHHHHHHHHHhhC-CChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC--------
Confidence 4577788877544 2455656555554432 2221 378889999999999999999988543
Q ss_pred chhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc
Q 008827 285 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL 364 (552)
Q Consensus 285 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 364 (552)
......+.|..+|+++++.++..++.+++..- ....+.+..+++++++.+|..|+.+|+.+...
T Consensus 114 ----~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 114 ----GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred ----CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 33466788999999999999998888886522 23456788889999999999999999988542
Q ss_pred CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHH
Q 008827 365 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY 444 (552)
Q Consensus 365 ~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~ 444 (552)
...+.|...+.+.++.|+..|++.+..+-. ++ ..+.+...... +..........
T Consensus 178 ------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~-----------A~~~l~~~~~~-~g~~~~~~l~~ 231 (410)
T TIGR02270 178 ------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL-----------AWGVCRRFQVL-EGGPHRQRLLV 231 (410)
T ss_pred ------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh-----------HHHHHHHHHhc-cCccHHHHHHH
Confidence 145567777899999999999999877632 22 23333332322 22223333333
Q ss_pred HHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh
Q 008827 445 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN 524 (552)
Q Consensus 445 ~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ 524 (552)
++... +. ..+++.|..++++++ ++..++++++.+.. -..++.|++
T Consensus 232 ~lal~--~~----------------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---------------p~av~~L~~ 276 (410)
T TIGR02270 232 LLAVA--GG----------------PDAQAWLRELLQAAA--TRREALRAVGLVGD---------------VEAAPWCLE 276 (410)
T ss_pred HHHhC--Cc----------------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC---------------cchHHHHHH
Confidence 33322 22 233467788888754 89999999998873 235888999
Q ss_pred hhcCCCccHHHHHHHHHHHHhhh
Q 008827 525 MVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 525 ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
.+.| +.+++.|.+|+..|.-.
T Consensus 277 ~l~d--~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 277 AMRE--PPWARLAGEAFSLITGM 297 (410)
T ss_pred HhcC--cHHHHHHHHHHHHhhCC
Confidence 8874 34899999999988753
No 69
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.82 E-value=3.9e-06 Score=80.48 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=191.6
Q ss_pred HHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCc-HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827 166 INNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNG-VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS 243 (552)
Q Consensus 166 i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~ 243 (552)
-+..++++.+. +-+.....++++.++......-.. .+-.. ...|-..+.++ ..++....+.++|..+... +++|-
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~-~~~~~~~~~~rcLQ~ll~~-~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSS-TNNDYIQFAARCLQTLLRV-DEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHhcC-cchhh
Confidence 45667777744 444555888888888654331100 00000 12333444443 3466778888999988864 57899
Q ss_pred HHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 008827 244 RCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIV 320 (552)
Q Consensus 244 ~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~ 320 (552)
.++...++..++..+. ..+-.+++..+-|++-|+.+ +..... +...+.++.|..++++ ..+.|-.-++.++.|+.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~-~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEK-LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888899888883 45779999999999999988 444444 5667899999999985 56778888999999998
Q ss_pred cCCc------hhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChh
Q 008827 321 VDFT------TRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPS 392 (552)
Q Consensus 321 ~~~~------~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~ 392 (552)
...+ .....++..++.+.+-.+.+. +|+++....-..-..|.. + ......+++-.-+.....|..+.+.
T Consensus 271 ~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~-s--vq~LsSFDeY~sEl~sG~L~WSP~H 347 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKN-S--VQDLSSFDEYKSELRSGRLEWSPVH 347 (442)
T ss_pred ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-H--HHhhccHHHHHHHHHhCCcCCCccc
Confidence 7553 222345555555555545443 455554432221111210 0 0000011111111112222221111
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhhcC-chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhh
Q 008827 393 VQEQALALVRNLVDGRINSVEYIFAEDG-IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK 471 (552)
Q Consensus 393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~-~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~ 471 (552)
.-+. .| .+++ .-+++.. .++..|..+|+.+.+|.+..-||+-|+.+....|..+. ++++ -|
T Consensus 348 k~e~-FW---------~eNa-~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k------~g 409 (442)
T KOG2759|consen 348 KSEK-FW---------RENA-DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEK------YG 409 (442)
T ss_pred cccc-hH---------HHhH-HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHH------hc
Confidence 1000 00 0011 1111111 17888999999978899999999999999987775554 5553 78
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 472 AQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 472 ~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
+-..++++|.++|++||.+|..|+..+.
T Consensus 410 gKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 410 GKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 8899999999999999999999998876
No 70
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=3.8e-06 Score=83.11 Aligned_cols=354 Identities=14% Similarity=0.126 Sum_probs=219.9
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 199 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~ 199 (552)
.+.+++++..+.+.+..+|..|...++|+++....... .....+...|.++..+.+.--..++..+-.+..+-..-+.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence 45678899999999999999999999999986543211 2334567777777765443334556666555432111111
Q ss_pred HHH-HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 008827 200 LAF-EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSAACMCLRSVS 277 (552)
Q Consensus 200 ~~~-~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls 277 (552)
..+ -.+.+|.|-+.+... .|..|...+.-|..+-. .++. +.+. -..+++-+..+|.++++++|..+-.++.++-
T Consensus 161 ~tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds-~P~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDS-VPDL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred cccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhc-CCcH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 011 122234444444433 36677777776666643 2222 2221 1246778889999999999987777666663
Q ss_pred cccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH-HHHHHHHH
Q 008827 278 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNALR 356 (552)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~ 356 (552)
....+.... +--...++.++.-+.+++++++..|..-+..++.-++..- ...-.|++..++..+.+..+ .++..+..
T Consensus 237 ~eI~s~P~s-~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~ 314 (675)
T KOG0212|consen 237 AEIRSSPSS-MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQM 314 (675)
T ss_pred HHHhcCccc-cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence 221111111 2335778999999999999999999888887776544322 22235667777777776655 35554433
Q ss_pred H---HHHhcccCChHhHHHHHHh-hcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 008827 357 A---LRNLIFLAEDKCKEEIFME-LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI 432 (552)
Q Consensus 357 a---L~~l~~~~~~~~~~~i~~~-~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~ 432 (552)
. +..++. ++..+++ ++- ..++.+.+.+.++..+.+-.++.-+..+-...|. .++.....+++.|...|.+
T Consensus 315 ~n~~l~~l~s--~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~---ql~~h~~~if~tLL~tLsd 388 (675)
T KOG0212|consen 315 VNGLLLKLVS--SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG---QLLVHNDSIFLTLLKTLSD 388 (675)
T ss_pred HHHHHHHHHh--hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc---hhhhhccHHHHHHHHhhcC
Confidence 2 222222 2222222 332 3578888889999999999999888888765543 2233322378888888887
Q ss_pred cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 433 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 433 ~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
++++|...++..+.+++....+ .. . ..++..|..+......-++..+...+..+|
T Consensus 389 -~sd~vvl~~L~lla~i~~s~~~-~~-~---------~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 389 -RSDEVVLLALSLLASICSSSNS-PN-L---------RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred -chhHHHHHHHHHHHHHhcCccc-cc-H---------HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 8899999999999999975442 11 0 123344555555555566777777777776
No 71
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.78 E-value=1.6e-05 Score=81.20 Aligned_cols=405 Identities=14% Similarity=0.086 Sum_probs=228.1
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCC----CCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNE----SENVSGLGASIISHSCKTSLEQKLLFDAGVL 79 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~----~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i 79 (552)
+++|....+..|+.+.-.+...... ..++..+.+|.++.-++.. +...-.....+-..+| .+.|.-
T Consensus 646 ~sPDeemkkivLKVv~qcc~t~Gv~-~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia---------~KvG~~ 715 (1172)
T KOG0213|consen 646 GSPDEEMKKIVLKVVKQCCATDGVE-PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA---------AKVGSD 715 (1172)
T ss_pred CCChHHHHHHHHHHHHHHhcccCCC-HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH---------HHhCch
Confidence 5788999999999999998777666 6777788999998888631 1111111222222222 223443
Q ss_pred HH---HHHhhcC-CHHHHHHHHHHHHHHhcCCh--hhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCC
Q 008827 80 KR---LTSLLGG-SLIQRDASLESIATIFKNNP--EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP 153 (552)
Q Consensus 80 ~~---L~~lL~~-~~~v~~~al~~L~~l~~~~~--~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~ 153 (552)
+. ++.=+++ ++..|.....+...+...-. +...++ ....+..++..+++.+.... ....++...+..-.
T Consensus 716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl----eE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL----EERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALG 790 (1172)
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH----HHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHh
Confidence 33 3333444 44556656666555432110 010011 12345556655554444333 22233333332211
Q ss_pred CcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHH--HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827 154 CYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQ--KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA 230 (552)
Q Consensus 154 ~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a 230 (552)
...+ -.-..++..++..|+ .++.+|..|+..++.++.--..+. +.+...| -.|.+.|... +|++.-..+.+
T Consensus 791 ~r~k--pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgee--ypEvLgsILgA 864 (1172)
T KOG0213|consen 791 GRVK--PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEE--YPEVLGSILGA 864 (1172)
T ss_pred hccc--cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcc--cHHHHHHHHHH
Confidence 1111 111335555666666 457899999999988874211110 1111122 2345555554 47777776666
Q ss_pred HHHhhcCChhHHHHH-HhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHH---HHHHhhcCCCH
Q 008827 231 LADMCSKLECCRSRC-LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI---PLVRLLDDTST 306 (552)
Q Consensus 231 L~~l~~~~~~~~~~~-~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~---~Lv~lL~~~~~ 306 (552)
+..++..-. .-+.. --.+++|.|...|++....|+.++...++.++...+.. +-....+. -|+.+|...+.
T Consensus 865 ikaI~nvig-m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~----v~aREWMRIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 865 IKAIVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY----VSAREWMRICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHhcc-ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc----CCHHHHHHHHHHHHHHHHHHHH
Confidence 666653210 00000 02368999999999999999999999999998764431 11122333 36666777889
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh
Q 008827 307 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI 386 (552)
Q Consensus 307 ~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll 386 (552)
++|.+|..+++.++..-.+ ..++..|+.-|+..+...|....-+++-.+....| -.++|.|..=-
T Consensus 940 ~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p--------FtVLPalmneY 1004 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP--------FTVLPALMNEY 1004 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc--------hhhhHHHHhhc
Confidence 9999999999988753322 34455555555544333333322222222221111 11344444444
Q ss_pred cCCChhHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827 387 CDPEPSVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~ 454 (552)
+.++..||.-.+.++..++.-- ....+|+.. +.++|..-|.. .+..-+.-++.++..++-|.+
T Consensus 1005 rtPe~nVQnGVLkalsf~FeyigemskdYiya----v~PlleDAlmD-rD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1005 RTPEANVQNGVLKALSFMFEYIGEMSKDYIYA----VTPLLEDALMD-RDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH----hhHHHHHhhcc-ccHHHHHHHHHHHHHHhcCCC
Confidence 5788899999999998887431 112334444 56777777776 788888889999998887644
No 72
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=4.6e-07 Score=88.83 Aligned_cols=267 Identities=17% Similarity=0.228 Sum_probs=186.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC
Q 008827 225 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT 304 (552)
Q Consensus 225 ~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 304 (552)
.+++..|.++++.-.-.|..+.+..+.+.++++|++++..+...+...+.|+.-..++++.. |.+.|++..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~-fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAG-FLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHH-HHHhhHHHHHHHHhhcc
Confidence 44556677777655556777788889999999999999999999999999998888888888 99999999999999988
Q ss_pred CHHHHHHHHHHHHHhhcCCchh-HHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh--HhHHHHHHh----h
Q 008827 305 STAVQVAALGAISNIVVDFTTR-RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED--KCKEEIFME----L 377 (552)
Q Consensus 305 ~~~v~~~a~~aL~nl~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~----~ 377 (552)
|..+|....|.+..++.++... +-.++...++..++++..+++-.++...+..|.|++++... +.++..+.. .
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 8899999999999999876544 23466678999999999999999999999999999884432 122211111 2
Q ss_pred cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc--------------------------
Q 008827 378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR-------------------------- 431 (552)
Q Consensus 378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~-------------------------- 431 (552)
....+.+.+...+|-..++.+..|.+++..+...-+.+.+... ++..+...|.
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~-~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQED-MLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHH-HHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 3455666666666655555566776666554332222222211 1111111110
Q ss_pred --------------------------ccCchhHHHHHHHHHHhhcCCC---h-----hhHHHHHHHhhHhhhhhhHHHHH
Q 008827 432 --------------------------IASKAEIEIQGMYVLGNVATGK---E-----SHKEAVMDQLLLRAENKAQSCII 477 (552)
Q Consensus 432 --------------------------~~~~~~v~~~a~~~L~~la~~~---~-----~~~~~i~~~~~~~~~~~~v~~Lv 477 (552)
..++++.-.+..|.+.|+.... + ..|..++. ..|+-..++
T Consensus 645 ~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~------~~G~~e~l~ 718 (743)
T COG5369 645 NLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILC------ANGIREWLV 718 (743)
T ss_pred cccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHH------HccHHHHHH
Confidence 1245567777888888866421 1 02333332 367777777
Q ss_pred HhhcCCChhHHHHHHHHHHhhc
Q 008827 478 KFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 478 ~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
++-.+....||..+-.+|-++-
T Consensus 719 k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 719 KIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHhccCcHHHHHHHHHHHHhhh
Confidence 7777778899999988887763
No 73
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=7.3e-06 Score=86.32 Aligned_cols=330 Identities=12% Similarity=0.126 Sum_probs=214.2
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCcccc--c---ccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchH
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDFL--Q---EENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLK 80 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~--~---~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~ 80 (552)
+..-+..++.+|+|+...+-.- ..+| + -+..+.++.++.+ .++.++..+.+++.....+.+....+...|++-
T Consensus 1738 s~~~v~m~LtAL~Nli~~nPdl-asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1738 TETKVLMTLTALANLVSANPDL-ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLT 1816 (2235)
T ss_pred hHHHHHHHHHHHHHHHhhCcch-hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHH
Confidence 3446788999999997664322 1233 1 2456788888875 568899999999999988888888999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhC---CC--
Q 008827 81 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNAS---PC-- 154 (552)
Q Consensus 81 ~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~---~~-- 154 (552)
.|+.+|.+.++.|+-++..|..+++..+-.+.+.. .|++..+.. ++.+..+.+|..|+..|..+.... +.
T Consensus 1817 ~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~----hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ 1892 (2235)
T KOG1789|consen 1817 TLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALE----HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT 1892 (2235)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHh----cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee
Confidence 99999999889999999999999987655554443 344444444 567888999999999999886432 11
Q ss_pred ---------cchhhhhHHhHHHHHHHhcC---CCCch------hchHHHHHHHhhcCCHHH-------------------
Q 008827 155 ---------YLQDVGIKTKLINNLLELLD---DPGRV------GDEASFAFSSLIAEKEDM------------------- 197 (552)
Q Consensus 155 ---------~~~~~~~~~g~i~~Lv~ll~---~~~~v------~~~a~~~L~~l~~~~~~~------------------- 197 (552)
-..+.++ .|- +.-+.++. +++++ +......+..++.+--..
T Consensus 1893 ITL~kFLP~~f~d~~R-D~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~ 1970 (2235)
T KOG1789|consen 1893 ITLIKFLPEIFADSLR-DSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTS 1970 (2235)
T ss_pred eehHHhchHHHHHHHh-cCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchh
Confidence 0011111 111 44455554 23321 222333344443211000
Q ss_pred -------------HHHHHH------------hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHH
Q 008827 198 -------------QKLAFE------------VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLK 252 (552)
Q Consensus 198 -------------~~~~~~------------~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~ 252 (552)
++-+.+ .+.++++.+++..+.++....+--..++..|.+..+...+.+-..|.+|
T Consensus 1971 Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylP 2050 (2235)
T KOG1789|consen 1971 EADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLP 2050 (2235)
T ss_pred hhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchH
Confidence 000000 1334455555555443333344444555666666677777777789999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHH
Q 008827 253 LVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFI 331 (552)
Q Consensus 253 ~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~ 331 (552)
.++..+...+..+-..+...|+.|+.+ ..|-..+..-..+.+++..+... +....-|+.+|..+.... +..-....
T Consensus 2051 K~~~Am~~~n~s~P~SaiRVlH~Lsen--~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~L 2127 (2235)
T KOG1789|consen 2051 KFCTAMCLQNTSAPRSAIRVLHELSEN--QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQML 2127 (2235)
T ss_pred HHHHHHHhcCCcCcHHHHHHHHHHhhc--cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 999999988777778999999999876 34433355666677788777543 345568888888776422 22223456
Q ss_pred hhCcHHHHHHhhcCC
Q 008827 332 RLGGVKLLVQLSKSM 346 (552)
Q Consensus 332 ~~g~i~~L~~ll~~~ 346 (552)
..|.+|.|+++|...
T Consensus 2128 K~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2128 KCGLVPYLLQLLDSS 2142 (2235)
T ss_pred ccCcHHHHHHHhccc
Confidence 789999999999764
No 74
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.72 E-value=6.5e-07 Score=87.45 Aligned_cols=225 Identities=15% Similarity=0.163 Sum_probs=151.4
Q ss_pred HHHHHHHHh--cCChhhHHHHHHHHHHHhhhCCCcchhhhhH------HhHHHHHHHhcC-CCCchhchHHHHHHHhhcC
Q 008827 123 LSCIIEIVK--DRFARTRLLASLCLIVIRNASPCYLQDVGIK------TKLINNLLELLD-DPGRVGDEASFAFSSLIAE 193 (552)
Q Consensus 123 l~~l~~ll~--~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~------~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~ 193 (552)
...++.+++ +.+.++.......+..+....+.. .+.+.. .....+++++++ .+..++..++..|+.++..
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 333444443 467888888888888888876642 222332 125677888887 4456789999999999877
Q ss_pred CHHHHHHHHHhCcHHHHHHhhhcCCC--ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc-----C--CCCHH
Q 008827 194 KEDMQKLAFEVNGVDKLYNHLQKGSL--HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-----A--HDSSD 264 (552)
Q Consensus 194 ~~~~~~~~~~~~~i~~L~~~L~~~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L-----~--~~~~~ 264 (552)
.+...... ..+.++.+++++.+... +...+..++.+|.++.. .+.+|..+.+.++++.+.+.+ . ..+..
T Consensus 136 ~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 136 GPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 65533221 14567888888876321 13456888999999985 689999999999999999999 2 33568
Q ss_pred HHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch-hHHHHHhhCcHHHHHHh
Q 008827 265 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLVQL 342 (552)
Q Consensus 265 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~g~i~~L~~l 342 (552)
+++.++.|+|.|+.+ +..... +...++++.|+++++ ...+.+..-+..++.|++..... ....++..|+++.+-.+
T Consensus 214 l~Y~~ll~lWlLSF~-~~~~~~-~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 214 LQYQALLCLWLLSFE-PEIAEE-LNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHH-HHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHH-HhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 899999999999998 444444 677889999999997 56789999999999999976553 56677777777776666
Q ss_pred hcC--CCHHHHH
Q 008827 343 SKS--MDSTIRL 352 (552)
Q Consensus 343 l~~--~~~~v~~ 352 (552)
... +|+++..
T Consensus 292 ~~rk~~Dedl~e 303 (312)
T PF03224_consen 292 SERKWSDEDLTE 303 (312)
T ss_dssp HSS--SSHHHHH
T ss_pred hcCCCCCHHHHH
Confidence 554 3555443
No 75
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.71 E-value=2.1e-06 Score=82.98 Aligned_cols=275 Identities=16% Similarity=0.110 Sum_probs=186.4
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVS 277 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls 277 (552)
..+...|++..|++++..++....+|..+.+.|-.+.. .++++.++..| +..++.+-+ ...++.....+..|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 44566899999999999887666778899998888764 35677777766 555555555 456788889999999998
Q ss_pred cccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827 278 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 356 (552)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 356 (552)
.+.+..++. ++..|++..++-+++..+|.+...|+-+|+|++... ...+..+++..+-+.|..+..+.++-+|.+|+.
T Consensus 251 KHSeet~~~-Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQR-LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHH-HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 887778887 899999999999999999999999999999987633 345667888889899999988889999999999
Q ss_pred HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCch
Q 008827 357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 436 (552)
Q Consensus 357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~ 436 (552)
+++.++... +.-..+...+.+..+-.++.+-||.-- +.. .-++.-..+..-++.|+.+|++ +.-
T Consensus 330 AV~vlat~K--E~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD---~hd~aQG~~~d~LqRLvPlLdS-~R~ 393 (832)
T KOG3678|consen 330 AVAVLATNK--EVEREVRKSGTLALVEPLVASLDPGRF----------ARD---AHDYAQGRGPDDLQRLVPLLDS-NRL 393 (832)
T ss_pred HHhhhhhhh--hhhHHHhhccchhhhhhhhhccCcchh----------hhh---hhhhhccCChHHHHHhhhhhhc-chh
Confidence 999997643 233444445544443344443333211 000 0001111110135667777776 444
Q ss_pred hHHHHHHHHHHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 437 EIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 437 ~v~~~a~~~L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
+-+.-+++-+..=++ .+......+++ +-|+++.|.++-+|+|...-+-|..+|.-+.
T Consensus 394 EAq~i~AF~l~~EAaIKs~Q~K~kVFs------eIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 394 EAQCIGAFYLCAEAAIKSLQGKTKVFS------EIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhhhHHHHHHHHHHHHHhccchhHHH------HHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 444333333322111 22223334554 3688999999999888765556666666555
No 76
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.69 E-value=1.7e-06 Score=84.50 Aligned_cols=224 Identities=16% Similarity=0.163 Sum_probs=149.4
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHhhcccccccchhhhc------cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 008827 251 LKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMN------ETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 322 (552)
Q Consensus 251 l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~------~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 322 (552)
...++.+|+ ..+.++....+..+..+....+..... +.. .....++++++.++|.-++..|+..+..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~-~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVEL-FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHH-HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 444555554 367888888888888887764433322 322 23678899999999999999999999999876
Q ss_pred CchhHHHHHhhCcHHHHHHhhcC----CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh-----c--CCCh
Q 008827 323 FTTRRSTFIRLGGVKLLVQLSKS----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-----C--DPEP 391 (552)
Q Consensus 323 ~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll-----~--~~~~ 391 (552)
.+..... ...+.++.++.++.+ ++..++..++.+|.++.. .+..|..+.+.++++.+.+++ . ..+.
T Consensus 136 ~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 136 GPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp TTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred CCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 5443322 125677888877765 345577889999999986 467999999999999999999 2 3445
Q ss_pred hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-hHHHHHHHhhHhhhh
Q 008827 392 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAEN 470 (552)
Q Consensus 392 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~~~~~~ 470 (552)
.++-+++-+++-++... +.++.+.+.+ +++.++.+++.+.+++|.+-++.++.|+....++ ....++. +
T Consensus 213 Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-------~ 282 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEP-EIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-------C 282 (312)
T ss_dssp HHHHHHHHHHHHHTTSH-HHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-------H
T ss_pred hHHHHHHHHHHHHhcCH-HHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-------c
Confidence 68888999999998763 3455555555 8999999999888999999999999999986654 4555554 5
Q ss_pred hhHHHHHHhhcC---CChhHHH
Q 008827 471 KAQSCIIKFLQS---NDSRLRT 489 (552)
Q Consensus 471 ~~v~~Lv~lL~~---~~~~~~~ 489 (552)
++. .+++.|+. +|+++..
T Consensus 283 ~~l-~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 283 GLL-KTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp -HH-HHHHHHHSS--SSHHHHH
T ss_pred cHH-HHHHHHhcCCCCCHHHHH
Confidence 664 45555554 4555543
No 77
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.65 E-value=3.4e-06 Score=81.54 Aligned_cols=274 Identities=13% Similarity=0.123 Sum_probs=187.3
Q ss_pred HHHHhcccHHHHHHhcCCCCH--HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 008827 243 SRCLSLQVLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNI 319 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl 319 (552)
+.+...|++..++.++..++. .||..+...|-.+... ++ +.. +...| ...++.+-+ .+.++.+...++.|.++
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN-~d~-va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-EN-RDR-VARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hh-hhH-Hhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 445567899999999998765 5688998888877544 22 222 34444 455555554 45688999999999999
Q ss_pred hcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHH
Q 008827 320 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALA 399 (552)
Q Consensus 320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~ 399 (552)
-.++....+.+++.|++..++-..+..++.+-..+..+|+|++-+.....+.++++....++|+-+-.+.|.-.+..|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 88877777889999999999999999999999999999999988777778889999999999999888888888888988
Q ss_pred HHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 008827 400 LVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 479 (552)
Q Consensus 400 ~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l 479 (552)
+..-++.++. .+..++..| .+.++-.++.+ -+|.. ++.... +.- .+...+.++.|+.+
T Consensus 330 AV~vlat~KE--~E~~VrkS~-TlaLVEPlva~-~DP~~----------FARD~h---d~a-----QG~~~d~LqRLvPl 387 (832)
T KOG3678|consen 330 AVAVLATNKE--VEREVRKSG-TLALVEPLVAS-LDPGR----------FARDAH---DYA-----QGRGPDDLQRLVPL 387 (832)
T ss_pred HHhhhhhhhh--hhHHHhhcc-chhhhhhhhhc-cCcch----------hhhhhh---hhh-----ccCChHHHHHhhhh
Confidence 8888776542 333344333 22222223333 22211 111000 000 01124556889999
Q ss_pred hcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHH
Q 008827 480 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544 (552)
Q Consensus 480 L~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~ 544 (552)
|+|..-+.+..+++-++.=+.- ..-+...+.+.+.|+|..|.++..+++.--...|..||..|
T Consensus 388 LdS~R~EAq~i~AF~l~~EAaI--Ks~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 388 LDSNRLEAQCIGAFYLCAEAAI--KSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhcchhhhhhhHHHHHHHHHHH--HHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 9987777776666555433321 11122356788999999999998865554445567777655
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=5.3e-05 Score=76.60 Aligned_cols=442 Identities=16% Similarity=0.115 Sum_probs=249.7
Q ss_pred ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827 35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ 113 (552)
Q Consensus 35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~ 113 (552)
...+..++.-++.+++++|+...+++......... .......+.+.++++. ...-|..+...+..+..++... .
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~---~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~--~ 169 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG---LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE--S 169 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc---cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh--h
Confidence 34567777777788899999999998876532221 1112345667777775 4456777777777776654332 2
Q ss_pred hccccCCccHHHHHHHHhcCChhhHHH-HHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---C-CCchhchHHHHHH
Q 008827 114 FVGPDTGRTLSCIIEIVKDRFARTRLL-ASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---D-PGRVGDEASFAFS 188 (552)
Q Consensus 114 ~~~~~~~~~l~~l~~ll~~~~~~vr~~-A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---~-~~~v~~~a~~~L~ 188 (552)
+. ..+.+..+....++.....+.. +..+.-....+.. ..++.+.+|.+-.+|. + .+.||..|..+..
T Consensus 170 ~~---~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~k 241 (569)
T KOG1242|consen 170 LK---EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAK 241 (569)
T ss_pred hh---hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHH
Confidence 21 2567777888888776655553 3333333332221 1223455566655554 2 3567766655544
Q ss_pred HhhcCCHHHHHHHHHhCc----HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHH
Q 008827 189 SLIAEKEDMQKLAFEVNG----VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSD 264 (552)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~----i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~ 264 (552)
.+... +...+ +|.++.-+... .++.+.+++..++.++...+. .-...-..++|.+.+.|.+..++
T Consensus 242 ai~~~--------~~~~aVK~llpsll~~l~~~--kWrtK~aslellg~m~~~ap~-qLs~~lp~iiP~lsevl~DT~~e 310 (569)
T KOG1242|consen 242 AIMRC--------LSAYAVKLLLPSLLGSLLEA--KWRTKMASLELLGAMADCAPK-QLSLCLPDLIPVLSEVLWDTKPE 310 (569)
T ss_pred HHHHh--------cCcchhhHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhchH-HHHHHHhHhhHHHHHHHccCCHH
Confidence 33221 11222 33333333332 256778899999988754332 23344557999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhC----cHHHHH
Q 008827 265 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG----GVKLLV 340 (552)
Q Consensus 265 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g----~i~~L~ 340 (552)
+|.++..++..++.-.++.- -..++|.|++-+.++...+ .++...|+.-+. . ..++.- .+|.|.
T Consensus 311 vr~a~~~~l~~~~svidN~d-----I~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttF--V----~~V~~psLalmvpiL~ 378 (569)
T KOG1242|consen 311 VRKAGIETLLKFGSVIDNPD-----IQKIIPTLLDALADPSCYT-PECLDSLGATTF--V----AEVDAPSLALMVPILK 378 (569)
T ss_pred HHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHhcCcccch-HHHHHhhcceee--e----eeecchhHHHHHHHHH
Confidence 99999999999977644422 2366788888888876433 233344432111 0 111122 344455
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcccC-ChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc
Q 008827 341 QLSKSMDSTIRLNALRALRNLIFLA-EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED 419 (552)
Q Consensus 341 ~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 419 (552)
+-+...+..++..++....|++.-. ++..-...+ ...+|-+-..+.++.|+++.-+.++|+.+..+... .-+ ..
T Consensus 379 R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~---~~f-~d 453 (569)
T KOG1242|consen 379 RGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGALLERLGE---VSF-DD 453 (569)
T ss_pred HHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh---hcc-cc
Confidence 5555567778888999999998754 332222222 23466667777788999999999999888755211 111 11
Q ss_pred CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHH
Q 008827 420 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVL 496 (552)
Q Consensus 420 ~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~ 496 (552)
..+.+...+.++.....+..++..+.....+. .+... .+++.++....+. ++.++..-.|.+.
T Consensus 454 --~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~------------~~~~~~~a~~~~~~~~~~~~dg~~~~~~ 519 (569)
T KOG1242|consen 454 --LIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE------------DILPEILANASSVLIDERIRDGVIWLFY 519 (569)
T ss_pred --cccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH------------HHHHHHHHHHhhccchhhhccCeeehhh
Confidence 46666666655333334555555555544322 11222 2233344433333 3446666666554
Q ss_pred hhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHH
Q 008827 497 NLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR 536 (552)
Q Consensus 497 ~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 536 (552)
-+-. ....+.+.. -..+++++.+-+.|.++.++..
T Consensus 520 ~lp~----~~~~~~~~y-i~~i~~~~~k~~ad~de~~~~~ 554 (569)
T KOG1242|consen 520 LLPY----IFGFQFQPY-IHEILDEFLKGLADNDEKGRDT 554 (569)
T ss_pred ccch----hhhHHhHHH-HHHHHHHHHHHhhhcCCccccc
Confidence 4432 122222222 2345677777665555555443
No 79
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.56 E-value=6.5e-05 Score=72.33 Aligned_cols=321 Identities=12% Similarity=0.063 Sum_probs=210.9
Q ss_pred chHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccc---cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827 78 VLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGP---DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS 152 (552)
Q Consensus 78 ~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~ 152 (552)
.+..++.+++. .++...-.+.-+..|...+......+... .....-.+.+.++...+..+...+.+.+..++..+
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 46677777775 34444556666666655554433222110 12334677888999999999998999999998877
Q ss_pred CCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827 153 PCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA 230 (552)
Q Consensus 153 ~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a 230 (552)
.+..... ...-....|...++ ++++....++++|..+...++ .+..++..+|+..++..+.++.....++-+.+.+
T Consensus 146 ~~~~~~~-e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 146 NCKMELS-ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred cccccch-HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 6432210 11112333334444 345667778888888886654 4566778899999999885443456677888999
Q ss_pred HHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccc------cccchhhhccCcHHHHHHhhc-
Q 008827 231 LADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIK------NLSAGSFMNETIVIPLVRLLD- 302 (552)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~------~~~~~~~~~~~~i~~Lv~lL~- 302 (552)
++-|+. ++...+.+...+.++.+.+.+++. -..|-+-.+.+++|+....+ ..... ++. +-+++-++.|+
T Consensus 224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~-mv~-~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQ-MVL-CKVLKTLQSLEE 300 (442)
T ss_pred HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH-HHh-cCchHHHHHHHh
Confidence 999985 556666667778999999999865 45677888889999976632 11122 344 44555566664
Q ss_pred --CCCHHHHHHHHHHHHH-------hhcCCchhH------------------------HHHHhh--CcHHHHHHhhcCCC
Q 008827 303 --DTSTAVQVAALGAISN-------IVVDFTTRR------------------------STFIRL--GGVKLLVQLSKSMD 347 (552)
Q Consensus 303 --~~~~~v~~~a~~aL~n-------l~~~~~~~~------------------------~~~~~~--g~i~~L~~ll~~~~ 347 (552)
-+|+++....-..-.. |+. ++... ..+-+. ..+..|+++|+.++
T Consensus 301 rkysDEDL~~di~~L~e~L~~svq~LsS-FDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~ 379 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKNSVQDLSS-FDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN 379 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence 2466554333222111 111 11111 112222 37889999998765
Q ss_pred -HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 348 -STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 348 -~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
+.+-..|+.=++...+.- |+.+..+...|+-+.+.++++++|++|+-.|+.++..+.
T Consensus 380 Dp~iL~VAc~DIge~Vr~y-P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVRHY-PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CCceeehhhhhHHHHHHhC-chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 667777888888888754 678888889999999999999999999999998877664
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.56 E-value=1e-05 Score=80.85 Aligned_cols=211 Identities=14% Similarity=0.092 Sum_probs=151.1
Q ss_pred cHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827 250 VLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 328 (552)
Q Consensus 250 ~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 328 (552)
+++.++..|. +++.+++..++.++... .....+..|+..|.++++.++..++.+|+.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~------------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ------------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc------------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 6888888994 67788887776665221 11224789999999999999999999997542
Q ss_pred HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
..+..+.|..+++++++.+|..++.+++.... + ..+.+..+|+++++.++..|+++|+.+....
T Consensus 115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--D-----------PGPALEAALTHEDALVRAAALRALGELPRRL 178 (410)
T ss_pred ---chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--C-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence 13567889999999999999999888876422 1 3567888899999999999999999987543
Q ss_pred cchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHH
Q 008827 409 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 488 (552)
Q Consensus 409 ~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~ 488 (552)
..+.|...+.+ .++.|+..+++.+..+.. +. .+..+..+.........
T Consensus 179 -------------a~~~L~~al~d-~~~~VR~aA~~al~~lG~--~~----------------A~~~l~~~~~~~g~~~~ 226 (410)
T TIGR02270 179 -------------SESTLRLYLRD-SDPEVRFAALEAGLLAGS--RL----------------AWGVCRRFQVLEGGPHR 226 (410)
T ss_pred -------------chHHHHHHHcC-CCHHHHHHHHHHHHHcCC--Hh----------------HHHHHHHHHhccCccHH
Confidence 46667667777 999999999999987743 21 12344443444444444
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827 489 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 545 (552)
Q Consensus 489 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~ 545 (552)
..+...+...- . ..+++.|..+++++ .+++.+.+|++.+-
T Consensus 227 ~~l~~~lal~~------~---------~~a~~~L~~ll~d~--~vr~~a~~AlG~lg 266 (410)
T TIGR02270 227 QRLLVLLAVAG------G---------PDAQAWLRELLQAA--ATRREALRAVGLVG 266 (410)
T ss_pred HHHHHHHHhCC------c---------hhHHHHHHHHhcCh--hhHHHHHHHHHHcC
Confidence 44333333221 1 14678899999854 48999999998764
No 81
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.52 E-value=0.00018 Score=70.29 Aligned_cols=473 Identities=15% Similarity=0.087 Sum_probs=238.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCccc-------c---cccchHHHHHh-hcCCCCcchHHHHHHHHhhcCChhhHHHHHh
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDF-------L---QEENMEFLLSL-LNNESENVSGLGASIISHSCKTSLEQKLLFD 75 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~-------~---~~~~i~~l~~l-l~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~ 75 (552)
..|+...++.|+.++..+ .++..+ + ++++-|.|+-+ |+++++..+..|.++++.+-.....-....+
T Consensus 9 ~akvr~~al~~~~~~~~~--~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKS--IEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred HHHHHhhHHHHHHHHHhh--hhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 457788899999887433 222222 2 34555655433 5677888888888887765332211000000
Q ss_pred ----cCc--------------hHHHHHhhc--CCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCCh
Q 008827 76 ----AGV--------------LKRLTSLLG--GSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFA 135 (552)
Q Consensus 76 ----~g~--------------i~~L~~lL~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~ 135 (552)
... -..|+-.|. +++.+...+++||.++....+-..-++.- -......+-.++++.|+
T Consensus 87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~--~~~~~~~ik~~i~~~d~ 164 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSL--LTKVWNQIKPYIRHKDV 164 (728)
T ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHH--HHHHHHHHHHHhhcCCC
Confidence 000 112222333 25577788999999998776544322210 02233445568899999
Q ss_pred hhHHHHHHHHHHHhhhCC-C-------------------cch--hhhhHHhHHHHHHH----------------------
Q 008827 136 RTRLLASLCLIVIRNASP-C-------------------YLQ--DVGIKTKLINNLLE---------------------- 171 (552)
Q Consensus 136 ~vr~~A~~~L~~l~~~~~-~-------------------~~~--~~~~~~g~i~~Lv~---------------------- 171 (552)
.|+..+...+.-+..... . |.- +.-.+--.-|.+.+
T Consensus 165 ~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i 244 (728)
T KOG4535|consen 165 NVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISI 244 (728)
T ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeee
Confidence 999998887776644320 0 000 00000000000111
Q ss_pred ----------------hcC---CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHH
Q 008827 172 ----------------LLD---DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALA 232 (552)
Q Consensus 172 ----------------ll~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~ 232 (552)
.+. ++..+|.++.++|.-++.+-.-.+....+ ....+...+.+ ..|.+++.+...+.
T Consensus 245 ~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~--~~p~~~l~~a~ll~ 320 (728)
T KOG4535|consen 245 VVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGE--ADPSIQLHGAKLLE 320 (728)
T ss_pred eecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCC--CChHHHHHHHHHHH
Confidence 111 22334556666666555332221111111 11222222222 45778888777776
Q ss_pred Hhhc-----CChhHHHHHHhcccHHH------HHHhcC-CCCHHHHHHHHHHHHHhhccc-ccccchhhhccCcHHHHHH
Q 008827 233 DMCS-----KLECCRSRCLSLQVLKL------VVDALA-HDSSDVRSAACMCLRSVSRSI-KNLSAGSFMNETIVIPLVR 299 (552)
Q Consensus 233 ~l~~-----~~~~~~~~~~~~~~l~~------lv~~L~-~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~ 299 (552)
.+.. +.++..+.-...|-+-. .-.... +..+..+.+.|.++.++.... ..+... .....+....
T Consensus 321 ~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~---~~T~~~~Fl~ 397 (728)
T KOG4535|consen 321 ELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND---RQTLCITFLL 397 (728)
T ss_pred HHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc---chhhhHHHHh
Confidence 6542 12222222111121110 011111 223466778888888885431 111110 0111222222
Q ss_pred hhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc---CChH---hHHH
Q 008827 300 LLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL---AEDK---CKEE 372 (552)
Q Consensus 300 lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~---~~~~---~~~~ 372 (552)
-+. +++.-++.+|..+.+-++.+.........-.++...+...+.+..-..|..+.|+++|++.. .-|. ..++
T Consensus 398 GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR 477 (728)
T KOG4535|consen 398 GCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQER 477 (728)
T ss_pred cccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHH
Confidence 223 33455777888888877766554443444456666677777777788999999999999642 1111 2233
Q ss_pred HHHhhcHHHHHhhh---cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc-CchHHH-HHHHhc---ccCchhHHHHHHH
Q 008827 373 IFMELTASLLASLI---CDPEPSVQEQALALVRNLVDGRINSVEYIFAED-GIILDA-VGRQLR---IASKAEIEIQGMY 444 (552)
Q Consensus 373 i~~~~~~~~l~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~-~~~~~~-l~~~L~---~~~~~~v~~~a~~ 444 (552)
+.... +..+.+.- .-+..+|+.++.++|+|+..- .+.+.+.+ +.+++- ..+++. ......|+.++|+
T Consensus 478 ~sg~l-l~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCy 552 (728)
T KOG4535|consen 478 FSGLL-LLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACY 552 (728)
T ss_pred HHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHH
Confidence 33222 22222221 124567999999999998732 11121111 001111 111221 1256789999999
Q ss_pred HHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-CChhHHHHHHHHHHhhcCC
Q 008827 445 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLTCS 501 (552)
Q Consensus 445 ~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l~~l~~~ 501 (552)
+++|+..+..-..+ +.-| ..-+++.|..++.+ .|+++|..|+.+|..-...
T Consensus 553 a~gNLfkn~a~~lq---~~~w---A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 553 AMGNLFKNPALPLQ---TAPW---ASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHHHhhcCcccccc---CCCc---hHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 99999974331011 0000 02345677777765 7899999999999877653
No 82
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.6e-05 Score=82.00 Aligned_cols=410 Identities=18% Similarity=0.179 Sum_probs=236.5
Q ss_pred ccchHHHHHhhcCCCCcch-HHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhh
Q 008827 35 EENMEFLLSLLNNESENVS-GLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS 112 (552)
Q Consensus 35 ~~~i~~l~~ll~~~~~~~~-~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~ 112 (552)
.+.++.+-+-+.+....-+ ..+-.+|+.+.-.... .+..+.++..... +-..+..+=.=+.+-+...++..
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a- 84 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA- 84 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-
Confidence 3445555555554443333 3444455555432221 1223344444443 22344444334444455554442
Q ss_pred hhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhh
Q 008827 113 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLI 191 (552)
Q Consensus 113 ~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~ 191 (552)
...+..++.-..+++|.+|..|.+..+.+-. + -+......+|.+.++ +++.+|..++....++-
T Consensus 85 -------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-------~-~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~ 149 (734)
T KOG1061|consen 85 -------ILAVNTFLKDCEDPNPLIRALALRTMGCLRV-------D-KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF 149 (734)
T ss_pred -------HhhhhhhhccCCCCCHHHHHHHhhceeeEee-------h-HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Confidence 3455667777789999999999987765432 1 234557888889998 56889999999999988
Q ss_pred cCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHH
Q 008827 192 AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACM 271 (552)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~ 271 (552)
..+++ ...+.|.++.|-.++.++ +|.+..+|+.+|..+...+++.-........+..++..+..-+. ..-+.
T Consensus 150 ~~~~~---~~~~~gl~~~L~~ll~D~--~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~E---W~qi~ 221 (734)
T KOG1061|consen 150 DIDPD---LVEDSGLVDALKDLLSDS--NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTE---WGQIF 221 (734)
T ss_pred cCChh---hccccchhHHHHHHhcCC--CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhh---hhHHH
Confidence 77654 345677788888888855 48889999999998876543311111111233333444433332 22333
Q ss_pred HHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHH
Q 008827 272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR 351 (552)
Q Consensus 272 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 351 (552)
.+-.+++..+... .-...++..+...|++.++.+...+...+.++........ ...-...-++++.++.+.. .++
T Consensus 222 IL~~l~~y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~-~~~~~K~~~pl~tlls~~~-e~q 296 (734)
T KOG1061|consen 222 ILDCLAEYVPKDS---REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN-ELLFKKVAPPLVTLLSSES-EIQ 296 (734)
T ss_pred HHHHHHhcCCCCc---hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH-HHHHHHhcccceeeecccc-hhh
Confidence 4444444432211 1223567778888889899999999999988876544422 2233456667777776665 555
Q ss_pred HHHHHHHHHhccc----------------CChH----hHHHHHHh----hcHHH----HHhhhcCCChhHHHHHHHHHHH
Q 008827 352 LNALRALRNLIFL----------------AEDK----CKEEIFME----LTASL----LASLICDPEPSVQEQALALVRN 403 (552)
Q Consensus 352 ~~a~~aL~~l~~~----------------~~~~----~~~~i~~~----~~~~~----l~~ll~~~~~~v~~~a~~~L~~ 403 (552)
..++.-+.-+... .+|. .|.+++.. ..++. +...-..-|.+...++++++++
T Consensus 297 yvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~ 376 (734)
T KOG1061|consen 297 YVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGR 376 (734)
T ss_pred HHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhh
Confidence 5555444333221 1221 11111111 11122 2222235577788889999999
Q ss_pred hhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-
Q 008827 404 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS- 482 (552)
Q Consensus 404 l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~- 482 (552)
++..-++. ++ +++.|..+++. +..-+...++-.+..+....+..-+.++ +.+...+.+
T Consensus 377 ~aik~e~~------~~--cv~~lLell~~-~~~yvvqE~~vvi~dilRkyP~~~~~vv------------~~l~~~~~sl 435 (734)
T KOG1061|consen 377 LAIKAEQS------ND--CVSILLELLET-KVDYVVQEAIVVIRDILRKYPNKYESVV------------AILCENLDSL 435 (734)
T ss_pred hhhhhhhh------hh--hHHHHHHHHhh-cccceeeehhHHHHhhhhcCCCchhhhh------------hhhccccccc
Confidence 87543221 22 77888888876 5555666666677777665553333333 344444544
Q ss_pred CChhHHHHHHHHHHhhcC
Q 008827 483 NDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 483 ~~~~~~~~a~~~l~~l~~ 500 (552)
.+++.|.+-.|.++..+.
T Consensus 436 ~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 436 QEPEAKAALIWILGEYAE 453 (734)
T ss_pred CChHHHHHHHHHHhhhhh
Confidence 578899999999998875
No 83
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00064 Score=69.51 Aligned_cols=259 Identities=14% Similarity=0.149 Sum_probs=142.2
Q ss_pred HHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC---CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827 40 FLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQFVG 116 (552)
Q Consensus 40 ~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~ 116 (552)
.+..=|.|.++.-...|..+++++- ..+.++.+.. -|+ ++|.+ .+-++..|.-||..|-+.+|+..+
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG-~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---- 184 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIG-SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---- 184 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhc-cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccC----
Confidence 3344444566767777777777774 3344443322 233 45553 357888888899998877777632
Q ss_pred ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhh----------hh-HHh---------------HHHHHH
Q 008827 117 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV----------GI-KTK---------------LINNLL 170 (552)
Q Consensus 117 ~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~----------~~-~~g---------------~i~~Lv 170 (552)
.++-...++.+++|.+..|-.+|...+..+++..+....-. .+ ..| ..-.++
T Consensus 185 --~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~ 262 (938)
T KOG1077|consen 185 --PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL 262 (938)
T ss_pred --hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence 24566777777777777777777666666666544311100 00 000 011122
Q ss_pred HhcC-----CCCchhchH---HHHHHHhhcCCHHH---HHHHHH---------------------hCcHHHHHHhhhcCC
Q 008827 171 ELLD-----DPGRVGDEA---SFAFSSLIAEKEDM---QKLAFE---------------------VNGVDKLYNHLQKGS 218 (552)
Q Consensus 171 ~ll~-----~~~~v~~~a---~~~L~~l~~~~~~~---~~~~~~---------------------~~~i~~L~~~L~~~~ 218 (552)
++|+ +++..+..- ..-+.+-+.+.+.. +...+. ..++..|.++|...
T Consensus 263 rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r- 341 (938)
T KOG1077|consen 263 RLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR- 341 (938)
T ss_pred HHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc-
Confidence 2222 111122111 11111222211111 100000 12234444544443
Q ss_pred CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHH
Q 008827 219 LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPL 297 (552)
Q Consensus 219 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~L 297 (552)
++.+|--++..++.|+.. +...+.+... ...++..|+ ..+..+|..++..|..+++. ++. ..++..|
T Consensus 342 -E~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Na-------k~IV~el 409 (938)
T KOG1077|consen 342 -ETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNA-------KQIVAEL 409 (938)
T ss_pred -cccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhH-------HHHHHHH
Confidence 245666666666666653 2222333322 677888888 77999999999999999876 332 2456778
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827 298 VRLLDDTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 298 v~lL~~~~~~v~~~a~~aL~nl~~~~ 323 (552)
++.|.+.++.+|+.-+.=++-|+..+
T Consensus 410 LqYL~tAd~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 410 LQYLETADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 99999899988888776666666543
No 84
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=5.1e-05 Score=75.41 Aligned_cols=320 Identities=13% Similarity=0.105 Sum_probs=189.0
Q ss_pred hHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827 161 IKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 239 (552)
Q Consensus 161 ~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 239 (552)
..++.+|+.+..+.+ +..++..||..+.|++.....- ...+-......++++..+++ ..++. +...+-.+-.+-.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd--~~V~~-~aeLLdRLikdIV 156 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSD--QNVRG-GAELLDRLIKDIV 156 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCc--ccccc-HHHHHHHHHHHhc
Confidence 557888888888885 5789999999999887421110 00111122345555444432 33332 2222222221100
Q ss_pred hHHH-HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 240 CCRS-RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 318 (552)
Q Consensus 240 ~~~~-~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 318 (552)
.-+. .+-=.+++|.+-+-+...++..|...+.-|..+-.. +....- -.-..+.+-|+.+|.|+++++|..+-.++.+
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~-~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMI-SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHH-hcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 0000 111124566666666678899998888877776443 222110 0234567778889999999999888877776
Q ss_pred hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCCh-hHHHHH
Q 008827 319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP-SVQEQA 397 (552)
Q Consensus 319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~-~v~~~a 397 (552)
+...-.+.-..+--...++.++.-++++++.++..|+.-+..+..-.++ .--..-.+.+..++.++.+.++ .+.+.+
T Consensus 235 fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~--~~l~~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 235 FLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR--DLLLYLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred HHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc--chhhhhhhhhhhcccCCCCCccccHHHHH
Confidence 5431110000111235788999999999999999998888877653321 1111234455666667766555 344433
Q ss_pred H---HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHH
Q 008827 398 L---ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQS 474 (552)
Q Consensus 398 ~---~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~ 474 (552)
. ..+..++.......+ +.-+ .+++.+.+.+.+ ...+.+..++.-+..+-...+...-.. .+.+.+
T Consensus 313 ~~~n~~l~~l~s~~~~~~~--id~~-~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~ql~~h--------~~~if~ 380 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSERLKEE--IDYG-SIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQLLVH--------NDSIFL 380 (675)
T ss_pred HHHHHHHHHHHhhhhhccc--cchH-HHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcchhhhh--------ccHHHH
Confidence 3 233333322110000 1111 268888888877 777888888877776665544322212 256667
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 475 CIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 475 ~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
-|.+-|++++..|...+...+.+++.
T Consensus 381 tLL~tLsd~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 381 TLLKTLSDRSDEVVLLALSLLASICS 406 (675)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 88899999999999999999999996
No 85
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.00035 Score=65.06 Aligned_cols=361 Identities=12% Similarity=0.080 Sum_probs=218.2
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc---chhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHH
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY---LQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKED 196 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~---~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~ 196 (552)
...+.+-.-+..++..|+..|.+.+..+....+.. ....++.+++.+.++..+. ++.+|...|...+..++.....
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 34455556677889999999999888887655422 1233557889999999987 6677877888888887754333
Q ss_pred HHHHHHHhCcHHH--HHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC-CCHHHHHHHHHHH
Q 008827 197 MQKLAFEVNGVDK--LYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCL 273 (552)
Q Consensus 197 ~~~~~~~~~~i~~--L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~-~~~~v~~~a~~~L 273 (552)
. ..+++.+.... +.++-...+ .-.|...+..+-.+.+-++.........|.+..+..-|+. .+.-|+.......
T Consensus 162 l-eaiFeSellDdlhlrnlaakcn--diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 162 L-EAIFESELLDDLHLRNLAAKCN--DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred H-HHhcccccCChHHHhHHHhhhh--hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 2 34555554432 222222221 2345555666666666666666677788999999888875 7788888888888
Q ss_pred HHhhcccccccchhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchh---HHHHHhh--CcHHHHHHhhcCC
Q 008827 274 RSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTR---RSTFIRL--GGVKLLVQLSKSM 346 (552)
Q Consensus 274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~---~~~~~~~--g~i~~L~~ll~~~ 346 (552)
..|+.. ...++- +.+.|+|..+..++. +++|--...+....+.+.....-. -+.+.+. -.++...++....
T Consensus 239 teLaet-eHgref-laQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn 316 (524)
T KOG4413|consen 239 TELAET-EHGREF-LAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN 316 (524)
T ss_pred HHHHHH-hhhhhh-cchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence 888765 333433 567899999999886 455544444554444433211100 0112211 2445556677778
Q ss_pred CHHHHHHHHHHHHHhcccCChHhHHHHHHhhc--HHHHHhhhcCCC-hhHHHHHHHHHHHhhcC---CcchH--------
Q 008827 347 DSTIRLNALRALRNLIFLAEDKCKEEIFMELT--ASLLASLICDPE-PSVQEQALALVRNLVDG---RINSV-------- 412 (552)
Q Consensus 347 ~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~--~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~---~~~~~-------- 412 (552)
++..+..|+.+++-+.. +.+-++.+...|. ..+++.-..+.+ ..-|+.++.+|.+++.- .++++
T Consensus 317 DpdaieaAiDalGilGS--nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeer 394 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGS--NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEER 394 (524)
T ss_pred CchHHHHHHHHHHhccC--CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHH
Confidence 89999999999998854 3334555555443 233333222333 33566677777776532 22211
Q ss_pred --HHHHhhcC-----chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--
Q 008827 413 --EYIFAEDG-----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-- 483 (552)
Q Consensus 413 --~~i~~~~~-----~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-- 483 (552)
..++.... .-.+++...++. +.++++..+...+..++..+. ....|+.. .+++..++..-...
T Consensus 395 lrclifdaaaqstkldPleLFlgilqQ-pfpEihcAalktfTAiaaqPW-alkeifak------eefieiVtDastEhaK 466 (524)
T KOG4413|consen 395 LRCLIFDAAAQSTKLDPLELFLGILQQ-PFPEIHCAALKTFTAIAAQPW-ALKEIFAK------EEFIEIVTDASTEHAK 466 (524)
T ss_pred HHHHHHHHHhhccCCChHHHHHHHHcC-CChhhHHHHHHHHHHHHcCcH-HHHHHhcC------ccceeeecccchhhHH
Confidence 12222211 135667777776 889999999999999998654 45556552 55555444332221
Q ss_pred -ChhHHHHHHHHHH
Q 008827 484 -DSRLRTAAVWAVL 496 (552)
Q Consensus 484 -~~~~~~~a~~~l~ 496 (552)
..+.|-+++.+|.
T Consensus 467 aakdAkYeccKAia 480 (524)
T KOG4413|consen 467 AAKDAKYECCKAIA 480 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 1234455555554
No 86
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00038 Score=71.35 Aligned_cols=254 Identities=16% Similarity=0.129 Sum_probs=168.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHH
Q 008827 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLA 201 (552)
Q Consensus 123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 201 (552)
.+.++.++++..|.+|..|...++.+.-..++. -.-++|.|++=|.+ ++.|+..|..++..|+..+|.+.-
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA------lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA------LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh------HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--
Confidence 455788999999999999999999887754431 13589999999985 477999999999999998886421
Q ss_pred HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC-HHHHHHHHHHHHHh--hc
Q 008827 202 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-SDVRSAACMCLRSV--SR 278 (552)
Q Consensus 202 ~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~-~~v~~~a~~~L~~l--s~ 278 (552)
..-|.+.+++.+++..+ +.-..+..+++|+.-.|...+. ++|++.+++++.. ..+.+.+..++..- +.
T Consensus 218 ---~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ---cccHHHHHHHhccCCCe-ehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 23477888887775444 4566778888888766665443 5889999988654 35555555554332 22
Q ss_pred ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 279 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 358 (552)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL 358 (552)
..++... .-.-++..|=.++.++|+.++.-++-+++.+...++..-+ .--+.+++.|.+.|+.+|..|+..|
T Consensus 289 g~~d~~a---siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSA---SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred CCCCcHH---HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHH
Confidence 2111110 1112345566677899999999999999999876554221 1235677889999999999999999
Q ss_pred HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
.-+.... +-.+++.. .+.++...+....+-..+.-+-.+|..+
T Consensus 361 ~gmVskk---Nl~eIVk~----LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 361 YGMVSKK---NLMEIVKT----LMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHHhhhh---hHHHHHHH----HHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 8886522 22222211 1122223333456655555555565543
No 87
>PF05536 Neurochondrin: Neurochondrin
Probab=98.44 E-value=0.0018 Score=67.79 Aligned_cols=233 Identities=15% Similarity=0.090 Sum_probs=153.4
Q ss_pred chHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhh---hhhccccCCccHHHHHHHHhc-------CChhhHHHHHHHHH
Q 008827 78 VLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV---SQFVGPDTGRTLSCIIEIVKD-------RFARTRLLASLCLI 146 (552)
Q Consensus 78 ~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~---~~~~~~~~~~~l~~l~~ll~~-------~~~~vr~~A~~~L~ 146 (552)
.++.-+.+|++ ++.-|..++-.+.+++..++... +++.+ .=+..++-+|+++ +....+..|+..|.
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~---aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFE---AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHH---hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 35667788887 56678889999999987765322 23332 3345777788876 44566778999999
Q ss_pred HHhhhCCCcchhhhhHHhHHHHHHHhcCC-CC-chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhH
Q 008827 147 VIRNASPCYLQDVGIKTKLINNLLELLDD-PG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF 224 (552)
Q Consensus 147 ~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~ 224 (552)
.++....- ..+ ----+.||.|++.+.. +. .+..++..+|..+++. +.-++.+.+.|+++.|++.+.+. +...
T Consensus 83 ~f~~~~~~-a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~---~~~~ 156 (543)
T PF05536_consen 83 AFCRDPEL-ASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQ---SFQM 156 (543)
T ss_pred HHcCChhh-hcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhC---cchH
Confidence 98873321 111 1124689999999984 34 6778999999999954 45567889999999999988874 5578
Q ss_pred HHHHHHHHHhhcCChhHHHHHHh-----cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc-cchhhhccCcHHHH-
Q 008827 225 EGILLALADMCSKLECCRSRCLS-----LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPL- 297 (552)
Q Consensus 225 ~~a~~aL~~l~~~~~~~~~~~~~-----~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~L- 297 (552)
+.++..+.+++..... +...+ ..+++.+...+.......+...+..|..+-...+.. ... .......+.+
T Consensus 157 E~Al~lL~~Lls~~~~--~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~-~~~~~W~~~l~ 233 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQ--KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLES-PPSPKWLSDLR 233 (543)
T ss_pred HHHHHHHHHHHHhcch--hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcccccc-CChhhhHHHHH
Confidence 8999999988764321 11111 134566666666666677788888888885543211 111 2333444444
Q ss_pred ---HHhhc-CCCHHHHHHHHHHHHHhhcC
Q 008827 298 ---VRLLD-DTSTAVQVAALGAISNIVVD 322 (552)
Q Consensus 298 ---v~lL~-~~~~~v~~~a~~aL~nl~~~ 322 (552)
..+|+ ...++-|..|....+.+...
T Consensus 234 ~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 234 KGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 44454 35677788777777766643
No 88
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00039 Score=71.96 Aligned_cols=283 Identities=17% Similarity=0.139 Sum_probs=170.0
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHHH-HhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcch
Q 008827 80 KRLTSLLGG-SLIQRDASLESIAT-IFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQ 157 (552)
Q Consensus 80 ~~L~~lL~~-~~~v~~~al~~L~~-l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~ 157 (552)
.-|.++|.+ .+..+..|++-+.. |+++. ++ ...++.+++...+.++++|..---.|...+...++.+.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~-dv---------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGK-DV---------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCC-cH---------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee
Confidence 468888987 55666667665544 45443 33 35678899999999999999877777777765443211
Q ss_pred hhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhc
Q 008827 158 DVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS 236 (552)
Q Consensus 158 ~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~ 236 (552)
--|..+-+-|+++ +.+|..|..+|+.+-. .++..=.+-.+-++..+. .+-+|..|+.||-.+-.
T Consensus 108 ------LSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~--s~yVRk~AA~AIpKLYs 172 (968)
T KOG1060|consen 108 ------LSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDP--SPYVRKTAAHAIPKLYS 172 (968)
T ss_pred ------eeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCC--cHHHHHHHHHhhHHHhc
Confidence 2355566667754 4578888887775521 111100111222333343 47789999999988876
Q ss_pred CChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 237 KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI 316 (552)
Q Consensus 237 ~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 316 (552)
-+++... .++..+-.+|.+.++.|.-+|+.++-.++-.. -. .-++-...+.++|.+-+..=|......|
T Consensus 173 Ld~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evCPer----ld--LIHknyrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 173 LDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPER----LD--LIHKNYRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred CChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhH----HH--HhhHHHHHHHhhccchhhhhHHHHHHHH
Confidence 5555443 35677788889999999999998887765431 11 2345667788888776666666666666
Q ss_pred HHhhcCC--ch-h---------------------HHHHHhhCcH----HHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827 317 SNIVVDF--TT-R---------------------RSTFIRLGGV----KLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368 (552)
Q Consensus 317 ~nl~~~~--~~-~---------------------~~~~~~~g~i----~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 368 (552)
..-+... .+ . +..+...--+ ...-.++.+.++.+...++.+...++..
T Consensus 242 ~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~---- 317 (968)
T KOG1060|consen 242 TRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK---- 317 (968)
T ss_pred HHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH----
Confidence 5544321 00 0 0001111112 2233456777888888888888888541
Q ss_pred hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 369 ~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
.+ ...+...|+++|++. ..+|.-.+..+..++..
T Consensus 318 ~~----~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 318 NQ----VTKIAKALVRLLRSN-REVQYVVLQNIATISIK 351 (968)
T ss_pred HH----HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhc
Confidence 11 123466788887753 34454444444444433
No 89
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.1e-05 Score=79.35 Aligned_cols=294 Identities=14% Similarity=0.081 Sum_probs=182.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCC-----HH
Q 008827 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK-----ED 196 (552)
Q Consensus 123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~-----~~ 196 (552)
...+..+..+.|+.||..|+..|..+..... . ..-.-...++.+.+ +.+||..|.+.++-...-. .+
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---L----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccc---c----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3447788899999999999999988876211 1 12345567788874 5788888866555433221 11
Q ss_pred HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827 197 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 197 ~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l 276 (552)
..+.-....+..++++.+.+.+ ..+|..|..+|+.+..-+++.-.+..+..++..+-+.= ...+..-....+-
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~s--l~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr-----~ahkrpk~l~s~G 345 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRS--LSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR-----TAHKRPKALYSSG 345 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCc--eeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh-----hcccchHHHHhcC
Confidence 1111122345678888888764 67888899999987654444433333322222110000 0001111112222
Q ss_pred hccc-------------ccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh
Q 008827 277 SRSI-------------KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 343 (552)
Q Consensus 277 s~~~-------------~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll 343 (552)
-++. ..-... ++.+|.-..++.-|+|+-.+||.+|+.+++.|+...+... ...+.-|+.++
T Consensus 346 ewSsGk~~~advpsee~d~~~~s-iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMf 419 (823)
T KOG2259|consen 346 EWSSGKEWNADVPSEEDDEEEES-IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMF 419 (823)
T ss_pred CcccCccccccCchhhccccccc-cccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHh
Confidence 0000 001112 5778888899999999999999999999999998766543 24678899999
Q ss_pred cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchH
Q 008827 344 KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIIL 423 (552)
Q Consensus 344 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~ 423 (552)
.++...+|..|+.+|..++.+. .+.+.-++.+...|.+.++++++..-.+|.+.-..+-+.+.. ++
T Consensus 420 NDE~~~VRL~ai~aL~~Is~~l-------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-------~v 485 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMISVHL-------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-------CV 485 (823)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh-------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-------HH
Confidence 9999999999999999886532 123335778888899999999998888877764443332222 22
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827 424 DAVGRQLRIASKAEIEIQGMYVLGNVATG 452 (552)
Q Consensus 424 ~~l~~~L~~~~~~~v~~~a~~~L~~la~~ 452 (552)
..+...|.. -|+-+.....+++.+...
T Consensus 486 ~~lL~~L~k--yPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 486 AHLLKNLGK--YPQDRDEILRCMGRIGQN 512 (823)
T ss_pred HHHHHHhhh--CCCCcHHHHHHHHHHhcc
Confidence 333333332 233444555566666543
No 90
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.39 E-value=0.00025 Score=70.22 Aligned_cols=323 Identities=14% Similarity=0.093 Sum_probs=199.9
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC--CHHHHHHHHHHHHHhhcccccccch
Q 008827 209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAG 286 (552)
Q Consensus 209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~ 286 (552)
.+..++-+++ ..+|.++.+++..+..+ +..-+.+.+.++--.++..|..+ +..=|..|.+.++.+..-.+.. .
T Consensus 29 ~i~~~lL~~~--~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~--~ 103 (371)
T PF14664_consen 29 RIQCMLLSDS--KEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP--K 103 (371)
T ss_pred HHHHHHCCCc--HHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc--c
Confidence 3333444442 77999999999998864 45556777777777777777643 4456789999999886552211 1
Q ss_pred hhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC
Q 008827 287 SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE 366 (552)
Q Consensus 287 ~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 366 (552)
....+++..++.+.++++...+..|..+|+.++..++. .+.++||+..+++.+.++...+....+.++-.+.. .
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd--~ 177 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD--S 177 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC--C
Confidence 24568899999999999999999999999999986664 67789999999999887766677888888888764 4
Q ss_pred hHhHHHHHHhhcHHHHHhhhcCC-------Ch--hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh
Q 008827 367 DKCKEEIFMELTASLLASLICDP-------EP--SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 437 (552)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~ 437 (552)
|..|+.+.....++.++.-+.+. +. +-...+..++..+..+.+.......+. ...+.-++..|.. |+++
T Consensus 178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~-~~~lksLv~~L~~-p~~~ 255 (371)
T PF14664_consen 178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND-FRGLKSLVDSLRL-PNPE 255 (371)
T ss_pred cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC-chHHHHHHHHHcC-CCHH
Confidence 55676666555566666655433 22 244556666666666554322111111 0145666677777 7888
Q ss_pred HHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhh---cCCChhHH---HHHHHHHHhhcCCCCCCCHHHH
Q 008827 438 IEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFL---QSNDSRLR---TAAVWAVLNLTCSSSPGSSGRL 510 (552)
Q Consensus 438 v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL---~~~~~~~~---~~a~~~l~~l~~~~~~~~~~~~ 510 (552)
++...+-.+..+-.- .+...+..... ......+-+..--++- ........ ..-...+.+.. .--.
T Consensus 256 ir~~Ildll~dllrik~p~w~~~~~~~-~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~-------aLll 327 (371)
T PF14664_consen 256 IRKAILDLLFDLLRIKPPSWTESFLAG-RRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYL-------ALLL 327 (371)
T ss_pred HHHHHHHHHHHHHCCCCCCcccchhhc-ccccccccccchhhhcccccccccccCccccccccHHHHHH-------HHHH
Confidence 888888877776641 11111111100 0000001000000000 00000000 00001111110 0123
Q ss_pred HHHHHCCcHHHHHhhhcCC-CccHHHHHHHHHHHHhhhcCCCC
Q 008827 511 VKLHDAGIVSHVKNMVNDP-CLDVKLRVKTALEQFNSFDDSLV 552 (552)
Q Consensus 511 ~~l~~~g~~~~L~~ll~~~-~~~v~~~a~~al~~~~~~~~~~~ 552 (552)
..+.+.|.++.|+++.++. +..+..+|..-|+.+..++..++
T Consensus 328 ~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la~~lL 370 (371)
T PF14664_consen 328 AILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLASRLL 370 (371)
T ss_pred HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999998765 78899999999999998887653
No 91
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.39 E-value=0.00015 Score=72.01 Aligned_cols=246 Identities=23% Similarity=0.263 Sum_probs=170.1
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 114 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~ 114 (552)
..++.+.+++.+++..++..++..+...-. .-+++.+..++.+ ++.+|..|..+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 578999999998888888888888555431 3357889999987 67899999998887421
Q ss_pred ccccCCccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCC-------------chh
Q 008827 115 VGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-------------RVG 180 (552)
Q Consensus 115 ~~~~~~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~-------------~v~ 180 (552)
...++.++.++. +++..+|..|+..|..+.. ...++.++..++++. .++
T Consensus 104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGD------------ERALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc------------hhhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 345677888887 7999999999999987643 234777888887432 133
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC
Q 008827 181 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH 260 (552)
Q Consensus 181 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~ 260 (552)
..+...++.+. +...++.+...+.+.. ..+|..+..+|+.+...+ ..+.+.+...+.+
T Consensus 167 ~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~--~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~ 224 (335)
T COG1413 167 AAAAEALGELG-----------DPEAIPLLIELLEDED--ADVRRAAASALGQLGSEN---------VEAADLLVKALSD 224 (335)
T ss_pred HHHHHHHHHcC-----------ChhhhHHHHHHHhCch--HHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcC
Confidence 33444333332 2334667777777764 578888888888887543 2356788888889
Q ss_pred CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHH
Q 008827 261 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV 340 (552)
Q Consensus 261 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~ 340 (552)
+++.+|..++..+..+. .....+.+...+.+.++.++..+...+.. .. .......+.
T Consensus 225 ~~~~vr~~~~~~l~~~~------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~-------~~~~~~~l~ 281 (335)
T COG1413 225 ESLEVRKAALLALGEIG------------DEEAVDALAKALEDEDVILALLAAAALGA----LD-------LAEAALPLL 281 (335)
T ss_pred CCHHHHHHHHHHhcccC------------cchhHHHHHHHHhccchHHHHHHHHHhcc----cC-------chhhHHHHH
Confidence 99999999988875542 23446778888888877777666666641 10 013345555
Q ss_pred HhhcCCCHHHHHHHHHHHHHhc
Q 008827 341 QLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 341 ~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
..+.+....++..+..++....
T Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 282 LLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred HHhhcchhhHHHHHHHHHHhhc
Confidence 6666666677777777666553
No 92
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00043 Score=76.57 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=161.4
Q ss_pred cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827 206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 285 (552)
Q Consensus 206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 285 (552)
.||+|.++=.++ ++.++.+-......|..+.....+.. -..++.-|+.-+.+..|+||+++|.+|..|-+..+...
T Consensus 999 LIPrLyRY~yDP--~~~Vq~aM~sIW~~Li~D~k~~vd~y-~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~- 1074 (1702)
T KOG0915|consen 999 LIPRLYRYQYDP--DKKVQDAMTSIWNALITDSKKVVDEY-LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ- 1074 (1702)
T ss_pred hhHHHhhhccCC--cHHHHHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH-
Confidence 356666643333 35555544444444444322221111 12467778888889999999999999999987743321
Q ss_pred hhhhc--cCcHHHHHHhhcCCCHHHHHHHH---HHHHHhhcCCc---hh-HHHHHhhCcHHHHHH--hhcCCCHHHHHHH
Q 008827 286 GSFMN--ETIVIPLVRLLDDTSTAVQVAAL---GAISNIVVDFT---TR-RSTFIRLGGVKLLVQ--LSKSMDSTIRLNA 354 (552)
Q Consensus 286 ~~~~~--~~~i~~Lv~lL~~~~~~v~~~a~---~aL~nl~~~~~---~~-~~~~~~~g~i~~L~~--ll~~~~~~v~~~a 354 (552)
+.+ ..++..+++.++|=...+|++|- .+|+.++.... +. +..-+-+.++|.|+. .+ +.-+++|..+
T Consensus 1075 --~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~s 1151 (1702)
T KOG0915|consen 1075 --VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFS 1151 (1702)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHH
Confidence 221 24445555556665667776654 45555443211 11 111111345666663 34 6678999999
Q ss_pred HHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC-----------hhHHHHHHHHHHHhh-cCCcc--hHHHHHhhcC
Q 008827 355 LRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE-----------PSVQEQALALVRNLV-DGRIN--SVEYIFAEDG 420 (552)
Q Consensus 355 ~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~-----------~~v~~~a~~~L~~l~-~~~~~--~~~~i~~~~~ 420 (552)
+.++..++...+...+..+- ..++.+.+....-+ ..+...++..+|-=. .+.|- .++..++..+
T Consensus 1152 i~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred HHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence 99999998765432222111 12333443333222 345555666665333 33321 1122222211
Q ss_pred -----chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHH
Q 008827 421 -----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 495 (552)
Q Consensus 421 -----~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l 495 (552)
.++|.+.++++++-.-..+..++..+..++..-........ ...+..+...+++.++.+++..+.+.
T Consensus 1230 ~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s--------gKll~al~~g~~dRNesv~kafAsAm 1301 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS--------GKLLRALFPGAKDRNESVRKAFASAM 1301 (1702)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch--------hHHHHHHhhccccccHHHHHHHHHHH
Confidence 15788888888765666777888877777652211111111 23445666677889999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHH
Q 008827 496 LNLTCSSSPGSSGRLVKLH 514 (552)
Q Consensus 496 ~~l~~~~~~~~~~~~~~l~ 514 (552)
+.++.. .++++.+.+.
T Consensus 1302 G~L~k~---Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1302 GYLAKF---SSPDQMQKLI 1317 (1702)
T ss_pred HHHHhc---CChHHHHHHH
Confidence 999852 3455666663
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.37 E-value=0.00029 Score=69.92 Aligned_cols=275 Identities=23% Similarity=0.239 Sum_probs=185.4
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHH
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQK 199 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~ 199 (552)
..+..+.+++.++++.+|..|+..+..+.. .-++|.+..++.+ +..+|..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence 467788899999999999999988665432 3588999999984 4678999988887663
Q ss_pred HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC------------HHHHH
Q 008827 200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS------------SDVRS 267 (552)
Q Consensus 200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~------------~~v~~ 267 (552)
....++.+++++... .+..+|..+.++|+.+.. +. .++.++..+++.. ..+|.
T Consensus 103 ---~~~a~~~li~~l~~d-~~~~vR~~aa~aL~~~~~--~~---------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 103 ---DPEAVPPLVELLEND-ENEGVRAAAARALGKLGD--ER---------ALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ---ChhHHHHHHHHHHcC-CcHhHHHHHHHHHHhcCc--hh---------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 134578889988853 457899999999999752 22 2666777777655 24566
Q ss_pred HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCC
Q 008827 268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD 347 (552)
Q Consensus 268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 347 (552)
.+...+..+ .+...++.+...+.+++..++..|..+|+.+.... ..+.+.+...+.+++
T Consensus 168 ~a~~~l~~~------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~ 226 (335)
T COG1413 168 AAAEALGEL------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDES 226 (335)
T ss_pred HHHHHHHHc------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCC
Confidence 666665443 34456788999999999999999999999877543 356678889999999
Q ss_pred HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHH
Q 008827 348 STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG 427 (552)
Q Consensus 348 ~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~ 427 (552)
..+|..++.+|+.+-... ....+...+.+.+..+...+...+... ... . ....+.
T Consensus 227 ~~vr~~~~~~l~~~~~~~------------~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~---~--------~~~~l~ 281 (335)
T COG1413 227 LEVRKAALLALGEIGDEE------------AVDALAKALEDEDVILALLAAAALGAL--DLA---E--------AALPLL 281 (335)
T ss_pred HHHHHHHHHHhcccCcch------------hHHHHHHHHhccchHHHHHHHHHhccc--Cch---h--------hHHHHH
Confidence 999999999998884321 355666677777776665555444311 000 0 112222
Q ss_pred HHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHH
Q 008827 428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 495 (552)
Q Consensus 428 ~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l 495 (552)
..+.+ ....++..+...++.+..... ...+.....+++..++..+....
T Consensus 282 ~~~~~-~~~~~~~~~~~~l~~~~~~~~------------------~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 282 LLLID-EANAVRLEAALALGQIGQEKA------------------VAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred HHhhc-chhhHHHHHHHHHHhhcccch------------------HHHHHHHhcCCchhhHHHHHHHH
Confidence 33333 455666666666666554322 13334445566666666655444
No 94
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0016 Score=67.70 Aligned_cols=276 Identities=14% Similarity=0.104 Sum_probs=142.1
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCcccccccch---HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHH
Q 008827 6 SYMEVVDAGARSLKMIYQSKMAPKYDFLQEENM---EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRL 82 (552)
Q Consensus 6 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i---~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L 82 (552)
+++-=.+.|.+.|..+.-.-..+ +.+-..++- -.+.+++++.+...+.....++.+++...+.... +...+
T Consensus 32 espvn~r~c~~~lskllyll~qg-e~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvii-----vtssl 105 (865)
T KOG1078|consen 32 ESPVNPRKCRHILSKLLYLLNQG-EHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVII-----VTSSL 105 (865)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhh-----hhHHH
Confidence 34444567777777774222222 344433443 3455667788899998888888888764443221 22344
Q ss_pred HHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827 83 TSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVG 160 (552)
Q Consensus 83 ~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~ 160 (552)
..-.++ ++..|.+|+++|+.+....-.. . +...++ .+=+..+.+...|.-.=+++...+.+ .+
T Consensus 106 mkD~t~~~d~yr~~AiR~L~~I~d~~m~~--~---------iery~kqaivd~~~avSsaalvss~hll~~~~~----~v 170 (865)
T KOG1078|consen 106 MKDMTGKEDLYRAAAIRALCSIIDGTMLQ--A---------IERYMKQAIVDKNPAVSSAALVSSYHLLPISFD----VV 170 (865)
T ss_pred HhhccCCCcchhHHHHHHHHhhcCcchhH--H---------HHHHHHhHeeccccccchHHHHHHhhhhcccHH----HH
Confidence 444444 5678889999998876432111 1 111111 22244454444443322222222111 00
Q ss_pred hHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-CChhhHHHHHHHHHHhhcCC
Q 008827 161 IKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKL 238 (552)
Q Consensus 161 ~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~ 238 (552)
..+.....+-.. ++.-+|..|...|..+-..+ .-++.+++..+.... .++.-+---.+.-..+...+
T Consensus 171 --krw~neiqea~~s~~~m~QyHalglLyqirk~d---------rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~ 239 (865)
T KOG1078|consen 171 --KRWANEVQEAVNSDNIMVQYHALGLLYQIRKND---------RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN 239 (865)
T ss_pred --HHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc
Confidence 001111111111 11234566666665553222 123445555443322 11110000111111111111
Q ss_pred hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 318 (552)
Q Consensus 239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 318 (552)
........+.+-.++++....|...|+.++.++....+ +. + ...+..|--++.++.+.+|.+|...|..
T Consensus 240 -----~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~--l--~pavs~Lq~flssp~~~lRfaAvRtLnk 308 (865)
T KOG1078|consen 240 -----QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RE--L--APAVSVLQLFLSSPKVALRFAAVRTLNK 308 (865)
T ss_pred -----ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hh--c--chHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 11223467788888889999999999999988865422 11 1 2356667777888999999999999998
Q ss_pred hhcCCc
Q 008827 319 IVVDFT 324 (552)
Q Consensus 319 l~~~~~ 324 (552)
++...+
T Consensus 309 vAm~~P 314 (865)
T KOG1078|consen 309 VAMKHP 314 (865)
T ss_pred HHHhCC
Confidence 886554
No 95
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00023 Score=65.79 Aligned_cols=275 Identities=16% Similarity=0.144 Sum_probs=164.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 330 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 330 (552)
+..+++++.+.++.||+.|..-+..++... .+.-.-.+...++.+.+++.+.++ -..|+.++.|++... ..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHH
Confidence 445789999999999999998888886551 111101345668889999988776 778889999999654 455566
Q ss_pred HhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHH--H---hhcHHHHHhhhcCCChh--HH-HHHHHHHH
Q 008827 331 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF--M---ELTASLLASLICDPEPS--VQ-EQALALVR 402 (552)
Q Consensus 331 ~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~--~---~~~~~~l~~ll~~~~~~--v~-~~a~~~L~ 402 (552)
++. .++.++..+.++....-...+..|.|++...+. ...-.. . ..++..++....+.+.. .. .....++.
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~-~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE-VAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH-HHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 666 788888888888777788888999999874432 221111 1 02233333333322222 11 12233444
Q ss_pred HhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHH-HHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHH----
Q 008827 403 NLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI-QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII---- 477 (552)
Q Consensus 403 ~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~-~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv---- 477 (552)
|++.... ...++....-...+.+. .+.+ .+..++. ..++.|.|++-....|-..+-+ ..+++|.+.
T Consensus 158 nls~~~~-gR~l~~~~k~~p~~kll-~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e------~~~lLp~iLlPla 228 (353)
T KOG2973|consen 158 NLSQFEA-GRKLLLEPKRFPDQKLL-PFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDE------SINLLPAILLPLA 228 (353)
T ss_pred HHhhhhh-hhhHhcchhhhhHhhhh-cccc-cchhhhccchHHHHHhhhccchhHHHHhcc------hHHHHHHHHhhcC
Confidence 4443211 12222222211122221 1233 4455544 5778888877544432222211 123333332
Q ss_pred -----------------Hhhc-----CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh-hcCCCccHH
Q 008827 478 -----------------KFLQ-----SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM-VNDPCLDVK 534 (552)
Q Consensus 478 -----------------~lL~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l-l~~~~~~v~ 534 (552)
++|. .+|+.+|+.-.-+|.-|+. +...++.++..|+.+.+.++ ...++++++
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-----T~~GRe~lR~kgvYpilRElhk~e~ded~~ 303 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-----TRAGREVLRSKGVYPILRELHKWEEDEDIR 303 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-----hhHhHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence 2332 3688999999999999994 67788999999998888887 345677887
Q ss_pred HHHHHHHHHHhh
Q 008827 535 LRVKTALEQFNS 546 (552)
Q Consensus 535 ~~a~~al~~~~~ 546 (552)
+.+....+.+-+
T Consensus 304 ~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 304 EACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHh
Confidence 776555554443
No 96
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=2.1e-05 Score=83.18 Aligned_cols=225 Identities=18% Similarity=0.258 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhc
Q 008827 138 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK 216 (552)
Q Consensus 138 r~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~ 216 (552)
|.-|+..|..+...++ .+.+-...-|+.|+.++||+.+ .+++..-.++=+++..-++.++.-.+..+|..-+++.|..
T Consensus 487 RlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 4556666666655443 2334445569999999999955 5777777777777777778888888888887777777766
Q ss_pred -CCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcH
Q 008827 217 -GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV 294 (552)
Q Consensus 217 -~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i 294 (552)
+..+++.|.-++..|+.++.+-..-++...+.+++...++.|+++ .+-+|.-.|-||+.|=.+.+..+.. -.+.+..
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-cccccHH
Confidence 444568888999999999986555666777888999999999986 6888888899999996665555554 4667889
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcC----CchhHHHH------------HhhCcH---HHHHHhhcCCCHHHHHHHH
Q 008827 295 IPLVRLLDDTSTAVQVAALGAISNIVVD----FTTRRSTF------------IRLGGV---KLLVQLSKSMDSTIRLNAL 355 (552)
Q Consensus 295 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~----~~~~~~~~------------~~~g~i---~~L~~ll~~~~~~v~~~a~ 355 (552)
+.|..+|.|+-++||.+|+.||+.+..+ +++..... +|.... ..++.+++++.+-+|.+.+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 9999999999999999999999999875 33322111 222222 2566777888888999888
Q ss_pred HHHHHhccc
Q 008827 356 RALRNLIFL 364 (552)
Q Consensus 356 ~aL~~l~~~ 364 (552)
-+|..+..+
T Consensus 725 v~ls~~~~g 733 (1387)
T KOG1517|consen 725 VALSHFVVG 733 (1387)
T ss_pred HHHHHHHHh
Confidence 888888653
No 97
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=3.1e-05 Score=81.98 Aligned_cols=229 Identities=16% Similarity=0.153 Sum_probs=171.3
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC
Q 008827 181 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH 260 (552)
Q Consensus 181 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~ 260 (552)
..|...|+.+..-.+=.-.....-|..|-.+++|+++. .++|..-+...+.+..-++.++..+++.++...+++.|.+
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a--~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA--RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch--HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 45666666555444322233445677899999998875 6666666666666666678888889998888888888887
Q ss_pred -C--CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcH
Q 008827 261 -D--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGV 336 (552)
Q Consensus 261 -~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i 336 (552)
+ +++-|..|+-.|..+.++..--+.. ..+.+.+..++..|.++ .+-++.-++-+|+.|=.++...+-.=.+.++.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~a-cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKA-CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHH-hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 3 4588888999999999885544444 67888999999999884 78999999999999999998887666788999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcccC---ChHhHHHH------------HHhhcH---HHHHhhhcCCChhHHHHHH
Q 008827 337 KLLVQLSKSMDSTIRLNALRALRNLIFLA---EDKCKEEI------------FMELTA---SLLASLICDPEPSVQEQAL 398 (552)
Q Consensus 337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~~i------------~~~~~~---~~l~~ll~~~~~~v~~~a~ 398 (552)
+.|+.++.++.++||..|+.||+.+..+. .++....+ .+.... -.++.++++.++-++....
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999997742 11111111 122222 3667778889999999888
Q ss_pred HHHHHhhcCCcchH
Q 008827 399 ALVRNLVDGRINSV 412 (552)
Q Consensus 399 ~~L~~l~~~~~~~~ 412 (552)
-+|.++..+...+.
T Consensus 725 v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 725 VALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHHHHhhHHHh
Confidence 88888887754433
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.0029 Score=59.10 Aligned_cols=337 Identities=17% Similarity=0.150 Sum_probs=201.8
Q ss_pred HHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcC---ChhhHH--HHHhcCchHHHHHhhcC
Q 008827 14 GARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCK---TSLEQK--LLFDAGVLKRLTSLLGG 88 (552)
Q Consensus 14 ~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~---~~~~~~--~l~~~g~i~~L~~lL~~ 88 (552)
|+.||--++...... . +-++.++.|-.-|..++.++...++..+.++.. ++.... .++..|..+.++....+
T Consensus 63 cVscLERLfkakega--h-lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGA--H-LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccch--h-hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 455555554432211 1 123556666666777888898888887777643 333322 23467888999999887
Q ss_pred -CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHH--HHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhH
Q 008827 89 -SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSC--IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKL 165 (552)
Q Consensus 89 -~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~--l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~ 165 (552)
+.+|-.+|...+..++....... .+.. ...+.. +..+.-.-+.-+|......+..+.+.++. ........|.
T Consensus 140 eddeVAkAAiesikrialfpaale-aiFe---SellDdlhlrnlaakcndiaRvRVleLIieifSiSpe-saneckkSGL 214 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALFPAALE-AIFE---SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE-SANECKKSGL 214 (524)
T ss_pred CcHHHHHHHHHHHHHHHhcHHHHH-Hhcc---cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH-HHhHhhhhhH
Confidence 56888999999999887654442 3332 111111 22232233344555555666677665543 2344566788
Q ss_pred HHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827 166 INNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS 243 (552)
Q Consensus 166 i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~ 243 (552)
+..|..=++ ++.-|+..+......++..... ++...+.|.|+.+++++...+.+|--+..++...+.+-++ +...+
T Consensus 215 ldlLeaElkGteDtLVianciElvteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimd 292 (524)
T KOG4413|consen 215 LDLLEAELKGTEDTLVIANCIELVTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMD 292 (524)
T ss_pred HHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhh
Confidence 888877776 4556777777877788754332 3445577889999999987766666566667666666432 22211
Q ss_pred ----HHHhc--ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh----cCCCHHHHHHHH
Q 008827 244 ----RCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----DDTSTAVQVAAL 313 (552)
Q Consensus 244 ----~~~~~--~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~a~ 313 (552)
.+.+. -.+....+++...++..+.+|..+++.+..+.+.- . +....+-|..-+++ ..+...-++.+.
T Consensus 293 vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa--d-lllkTgppaaehllarafdqnahakqeaai 369 (524)
T KOG4413|consen 293 VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA--D-LLLKTGPPAAEHLLARAFDQNAHAKQEAAI 369 (524)
T ss_pred cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh--H-HHhccCChHHHHHHHHHhcccccchHHHHH
Confidence 12211 13444556677789999999999999997664321 1 33333333322222 223334567777
Q ss_pred HHHHHhhcCCch--h-----------HHHHHhh-------CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827 314 GAISNIVVDFTT--R-----------RSTFIRL-------GGVKLLVQLSKSMDSTIRLNALRALRNLIF 363 (552)
Q Consensus 314 ~aL~nl~~~~~~--~-----------~~~~~~~-------g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 363 (552)
.+|.+++..... . +..+.+. .-...+...++.+.++++..++.++..++.
T Consensus 370 haLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 370 HALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 777777653211 1 1112211 234456667777788888888888888764
No 99
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.005 Score=63.30 Aligned_cols=293 Identities=18% Similarity=0.178 Sum_probs=169.6
Q ss_pred HHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHh--cCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827 82 LTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVK--DRFARTRLLASLCLIVIRNASPCYLQD 158 (552)
Q Consensus 82 L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~vr~~A~~~L~~l~~~~~~~~~~ 158 (552)
+..=|.+ ++-...-|+.|++++... +.+.++ ...+ -+++. +....||..|+.||..+.+..++
T Consensus 116 iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~-----~~DI---~KlLvS~~~~~~vkqkaALclL~L~r~spD---- 181 (938)
T KOG1077|consen 116 IKNDLSSRNPTFVCLALHCIANIGSR--EMAEAF-----ADDI---PKLLVSGSSMDYVKQKAALCLLRLFRKSPD---- 181 (938)
T ss_pred HHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHh-----hhhh---HHHHhCCcchHHHHHHHHHHHHHHHhcCcc----
Confidence 3333444 455667899999998643 233333 2223 35444 34557888999999999987654
Q ss_pred hhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-----------CChhhHHH
Q 008827 159 VGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-----------LHPRRFEG 226 (552)
Q Consensus 159 ~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-----------~~~~~~~~ 226 (552)
.+...+....++.+|+|. -.|-..+...+..++..+++..+..+. -++..|..+..... +.|=+...
T Consensus 182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 234467999999999854 456667777777777776654332211 11223322222111 12335566
Q ss_pred HHHHHHHhhc-CChhHHHHHHhcccHHHHHHhcCCC--CHHHH-----HHHHHHHHHhhcccccccchhhhccCcHHHHH
Q 008827 227 ILLALADMCS-KLECCRSRCLSLQVLKLVVDALAHD--SSDVR-----SAACMCLRSVSRSIKNLSAGSFMNETIVIPLV 298 (552)
Q Consensus 227 a~~aL~~l~~-~~~~~~~~~~~~~~l~~lv~~L~~~--~~~v~-----~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv 298 (552)
.++.|...-. .++..|.+..+ .+..++...+.. +..++ -+..--..+++.+.+... . .-...+..|-
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~-~--ll~~~~~~Lg 335 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP-E--LLSRAVNQLG 335 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH-H--HHHHHHHHHH
Confidence 7777776633 23334444332 444444444421 11121 111111223332211111 1 1234566788
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh
Q 008827 299 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL 377 (552)
Q Consensus 299 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~ 377 (552)
+++.+..+.+|.-|....+.|+.. ......+-.+ .+.++..|+ ..|..+|..|+..|..+|..+ +.+.+
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~I---- 405 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQI---- 405 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHHH----
Confidence 888888899999999999999864 3333333333 677788888 678899999999999998743 33333
Q ss_pred cHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 378 TASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
+.-+++.|.+.|..+++...-=+.-++
T Consensus 406 -V~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 406 -VAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred -HHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 445677777888888877554333333
No 100
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.0013 Score=70.59 Aligned_cols=345 Identities=15% Similarity=0.135 Sum_probs=197.2
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHH
Q 008827 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQK 199 (552)
Q Consensus 122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~ 199 (552)
.+..++..++|.|..||-.|++.+..+....+.. ....++...++++. +++..+.-++-+|+.++...--...
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4555667888999999999999999999876532 23346666666666 4456677888999988754321110
Q ss_pred HHHHhCcHHHHHHhhhcCC------CChhhHHHHHHHHHHhhcCChh-HHHHHHhcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827 200 LAFEVNGVDKLYNHLQKGS------LHPRRFEGILLALADMCSKLEC-CRSRCLSLQVLKLVVDALAHDSSDVRSAACMC 272 (552)
Q Consensus 200 ~~~~~~~i~~L~~~L~~~~------~~~~~~~~a~~aL~~l~~~~~~-~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~ 272 (552)
.. ...+|.+++.|.... .-..+|.+|....+++++..+. .-+.++..=.--.+...+.+.....|++|..+
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 00 123455555443321 1235889998888888763322 11222222222334556668888999999998
Q ss_pred HHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHH-hhcCCCHHHH
Q 008827 273 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIR 351 (552)
Q Consensus 273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~ 351 (552)
+.....-.++... | + .|+...+.-...-+.++-..++.-...++..++.+++ .++. -+.+-+..+|
T Consensus 495 lqE~VGR~~n~p~------G-i-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 495 LQENVGRQGNFPH------G-I-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHhccCCCCCC------c-h-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHH
Confidence 8755322122211 1 1 2333333333455566666666555555555544443 2322 2556789999
Q ss_pred HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch---HHHHHhhc--C---chH
Q 008827 352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS---VEYIFAED--G---IIL 423 (552)
Q Consensus 352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~--~---~~~ 423 (552)
+.+.++|.++.... .+......++.++....+.+...+..+.-+.+.+..+.... .....+.. + ++-
T Consensus 562 elaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~ 636 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIP 636 (1133)
T ss_pred HHHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhcc
Confidence 99999999986532 34455567788888887888877766665555554332110 11111110 0 011
Q ss_pred HHHHHHhcccCc-hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 424 DAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 424 ~~l~~~L~~~~~-~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
+...+.+.- +. .-++...+..+.++...........+- .+.-..+.+.+.+++ ..|.+|.++++.+++
T Consensus 637 ~~~~~~~~r-g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~-------e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 637 PICDRYFYR-GQGTLMRQATLKFIEQLSLSKDRLFQDFVI-------ENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred HHHHHHhcc-chHHHHHHHHHHHHHHhhhccchhHHHHHH-------HHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 111111211 11 335566777888877654432222222 345455666665666 788999999999886
No 101
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.014 Score=63.09 Aligned_cols=462 Identities=15% Similarity=0.141 Sum_probs=237.3
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQ 113 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~ 113 (552)
..+..|++.+++.+..++..||+-+.....-.. .. .-..+|...+.++.. ++.....++-+|+.++...--.-..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~~--Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-PE--LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-HH--HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 456778888888999999999999999875444 11 223456677776664 3556667888888888653111001
Q ss_pred hccccCCccHHHHHHHH--------hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHh--cCCCCchhchH
Q 008827 114 FVGPDTGRTLSCIIEIV--------KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL--LDDPGRVGDEA 183 (552)
Q Consensus 114 ~~~~~~~~~l~~l~~ll--------~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~l--l~~~~~v~~~a 183 (552)
+ .+.++-+...+ .+.-..||-+|+..++.+++.......+.+. ....+.|+-- ++..-..|..|
T Consensus 418 l-----~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 418 L-----EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred H-----HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHH
Confidence 1 23344444433 2345578999999999999866432223222 2233333222 22223456677
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHh-cCCC
Q 008827 184 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LAHD 261 (552)
Q Consensus 184 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~-L~~~ 261 (552)
+.++......- |-.|.=++++...+ .....+.++-..+..--...+.++..+ +..++.- +.+=
T Consensus 492 sAAlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HW 556 (1133)
T KOG1943|consen 492 SAALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHW 556 (1133)
T ss_pred HHHHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccc
Confidence 76666554321 11211122222221 011223333333332222233444333 3333332 5677
Q ss_pred CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH---HHHHh---hC-
Q 008827 262 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR---STFIR---LG- 334 (552)
Q Consensus 262 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~---~~~~~---~g- 334 (552)
+..+|+.++++|..|+...+. .....++|+++.....++...+.-..-+.+.++....... ..+.+ +|
T Consensus 557 d~~irelaa~aL~~Ls~~~pk-----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l 631 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPK-----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL 631 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHH-----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh
Confidence 889999999999999875332 3456888999998888888888877777766654332211 00111 12
Q ss_pred --cHHHHHH-hhcCC-CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 335 --GVKLLVQ-LSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 335 --~i~~L~~-ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
.++.+.. ....+ ..-.+...+..+..+.... .......+.++....+.+.+++++ .++..+.++++.++..
T Consensus 632 ~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~--- 706 (1133)
T KOG1943|consen 632 LSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST--- 706 (1133)
T ss_pred hhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH---
Confidence 1222222 22222 1334555555666664422 223334444445555666665566 7888888998888743
Q ss_pred hHHHHHhhcCc---hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-hHHHHHHHhhHhhhhhhHHHHHHhhcCC-Ch
Q 008827 411 SVEYIFAEDGI---ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAENKAQSCIIKFLQSN-DS 485 (552)
Q Consensus 411 ~~~~i~~~~~~---~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~ 485 (552)
++..+.+. ++......+.+..+..++.....+++++-...-. +-+.++ ...+.....+. ++
T Consensus 707 ---y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----------c~~~l~~~p~d~~a 772 (1133)
T KOG1943|consen 707 ---YVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL-----------CKLVLELLPSDAWA 772 (1133)
T ss_pred ---HHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH-----------HHHHhccCcccccH
Confidence 22222221 2333333444423556677666666665421110 111111 11222222233 56
Q ss_pred hHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHCCcHHHHHhhhcCCCc----cHHHHHHHHHHHHhh
Q 008827 486 RLRTAAVWAVLNLTCSSS-PGSSGRLVKLHDAGIVSHVKNMVNDPCL----DVKLRVKTALEQFNS 546 (552)
Q Consensus 486 ~~~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~g~~~~L~~ll~~~~~----~v~~~a~~al~~~~~ 546 (552)
..|...+.++...+-+.. ....+..+++++ -.+..+.+...|... .||+.|..|+..+..
T Consensus 773 ~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e-~LL~~lddYttd~rGDVGswVReaAm~al~~~~~ 837 (1133)
T KOG1943|consen 773 EARQQNVKALAHVCKTVTSLLFSESIEKFRE-TLLNALDDYTTDSRGDVGSWVREAAMKALSSLLD 837 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHH-HHHHHHhhcccccCccHHHHHHHHHHHHHHhhhh
Confidence 677777777766653110 001112222211 122333333333322 477888887766543
No 102
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00068 Score=62.80 Aligned_cols=270 Identities=20% Similarity=0.227 Sum_probs=164.9
Q ss_pred HHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHH-HHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHH
Q 008827 167 NNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL-AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSR 244 (552)
Q Consensus 167 ~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 244 (552)
..+++++.. ++.|+..|..-+..+... ..+.. -.+...++.+.+++.... + .+.|+.++.+++. ++..|+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~--~--~~~a~~alVnlsq-~~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD--P--AEPAATALVNLSQ-KEELRKK 78 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc--c--ccHHHHHHHHHHh-hHHHHHH
Confidence 346677763 567888887777766654 11111 123445778888777653 3 5788999999986 5678888
Q ss_pred HHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchh--h---hccCcHHHHHHhhcCC-C-HHHHHHHHHHHH
Q 008827 245 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS--F---MNETIVIPLVRLLDDT-S-TAVQVAALGAIS 317 (552)
Q Consensus 245 ~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~--~---~~~~~i~~Lv~lL~~~-~-~~v~~~a~~aL~ 317 (552)
+.+. ++..++..+.++.+..-..+|.++.|+++........- + .+.|.+.....+++.+ + ..-..+-+..++
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8777 88889999999988888999999999998743221110 0 1244444444455432 2 122345566777
Q ss_pred HhhcCCchhHHHHHhhCc--HHHHHHhhcCCCHHHHH-HHHHHHHHhcccCChHhHHHHHHhh--cHHHHH---------
Q 008827 318 NIVVDFTTRRSTFIRLGG--VKLLVQLSKSMDSTIRL-NALRALRNLIFLAEDKCKEEIFMEL--TASLLA--------- 383 (552)
Q Consensus 318 nl~~~~~~~~~~~~~~g~--i~~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~~~~~~i~~~~--~~~~l~--------- 383 (552)
|++. +...|..+.+... ...+..+.. .+..+|. ..+.++.|.|+.. ..+..++..+ .++.|+
T Consensus 158 nls~-~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 158 NLSQ-FEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHhh-hhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCcccc
Confidence 8874 5566766665542 334444544 4455555 5778999988743 3555555421 222222
Q ss_pred ------------hhh-----cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHH
Q 008827 384 ------------SLI-----CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVL 446 (552)
Q Consensus 384 ------------~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L 446 (552)
+++ +.+|+.++...+.+|.-+|.... ..+++-..+ +.+++-.+=....++++++.+-...
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kg--vYpilRElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKG--VYPILRELHKWEEDEDIREACEQVV 310 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcC--chHHHHHHhcCCCcHHHHHHHHHHH
Confidence 333 24578899999999988887643 344444444 5666644433435666666655555
Q ss_pred HhhcC
Q 008827 447 GNVAT 451 (552)
Q Consensus 447 ~~la~ 451 (552)
..+..
T Consensus 311 q~Lv~ 315 (353)
T KOG2973|consen 311 QMLVR 315 (353)
T ss_pred HHHHh
Confidence 44444
No 103
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.15 E-value=0.00024 Score=76.74 Aligned_cols=281 Identities=16% Similarity=0.138 Sum_probs=177.0
Q ss_pred CCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCC----hhhhhhhccccCCc-c
Q 008827 49 SENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNN----PEVVSQFVGPDTGR-T 122 (552)
Q Consensus 49 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~----~~~~~~~~~~~~~~-~ 122 (552)
....+..|...|..++..-.....+ .-++|.++.++.. ..+||..|+.+|..+...- +.....+ .+ .
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF-----~eYl 508 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIF-----PEYL 508 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhh-----Hhhh
Confidence 4566788888888887543222222 4578999999997 4699999999998875321 1111111 22 3
Q ss_pred HHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHH
Q 008827 123 LSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKL 200 (552)
Q Consensus 123 l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 200 (552)
+|.|-.++.| ....+|.+=+.+|..++... -.+...+.-.....++++. .+-..+ ...+.+.++.
T Consensus 509 fP~L~~l~~d~~~~~vRiayAsnla~LA~tA-----~rFle~~q~~~~~g~~n~~nset~~~--------~~~~~~~~~L 575 (1431)
T KOG1240|consen 509 FPHLNHLLNDSSAQIVRIAYASNLAQLAKTA-----YRFLELTQELRQAGMLNDPNSETAPE--------QNYNTELQAL 575 (1431)
T ss_pred hhhhHhhhccCccceehhhHHhhHHHHHHHH-----HHHHHHHHHHHhcccccCcccccccc--------cccchHHHHH
Confidence 4556667777 77889999999999988742 2233333333333344421 110000 0011111111
Q ss_pred HHHhCcHH-HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827 201 AFEVNGVD-KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 279 (552)
Q Consensus 201 ~~~~~~i~-~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~ 279 (552)
..++. ....+|.+++ +.++..-+..|..||..-- +.=...-++++++.+|++.++.+|-+-..-|..++.-
T Consensus 576 ---~~~V~~~v~sLlsd~~--~~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 576 ---HHTVEQMVSSLLSDSP--PIVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred ---HHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence 11233 3445556653 6788888888888886210 0001112799999999999999998887777666544
Q ss_pred cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827 280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359 (552)
Q Consensus 280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 359 (552)
... . -+++..+|.|.+-|.|+.+.|...|.+++.-|+...--.|..+ ...++....+|-.+|..+|..++..+.
T Consensus 648 VG~---r-s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~ 721 (1431)
T KOG1240|consen 648 VGW---R-SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIA 721 (1431)
T ss_pred Eee---e-eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHH
Confidence 221 1 2567888999999999999999999999998875322222222 246667777888999999999999888
Q ss_pred Hhcc
Q 008827 360 NLIF 363 (552)
Q Consensus 360 ~l~~ 363 (552)
....
T Consensus 722 ~~~~ 725 (1431)
T KOG1240|consen 722 AIAR 725 (1431)
T ss_pred HHHh
Confidence 7754
No 104
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.12 E-value=6.7e-05 Score=60.43 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=103.9
Q ss_pred cCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh
Q 008827 291 ETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 369 (552)
Q Consensus 291 ~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 369 (552)
-+++..||.=.+ ..+.+.++.....|+|++.++.++ ..+.+.++++.++.-+...|+.+.+.++..|+|+|- ++.+
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Ny-s~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n 91 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINY-SHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTN 91 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchH-HHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHH
Confidence 456777777665 568999999999999999876554 478889999999999999999999999999999987 5678
Q ss_pred HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827 370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 415 (552)
Q Consensus 370 ~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 415 (552)
.+-|.+.++++.++..+.++...+.-.++.++..++.+.......+
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el 137 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL 137 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh
Confidence 9999999999999999999999999999999999987765433333
No 105
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.11 E-value=3.8e-05 Score=71.62 Aligned_cols=187 Identities=19% Similarity=0.208 Sum_probs=119.4
Q ss_pred CChhhHHHHHHHHHHhhcCC--hhHHHHHHhc--ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcH
Q 008827 219 LHPRRFEGILLALADMCSKL--ECCRSRCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV 294 (552)
Q Consensus 219 ~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~--~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i 294 (552)
.+...|..++..|..+...+ ......+.+. .+++.+...+.+....+...||.++..++...+..-.. .-..++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~--~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP--YADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH--HHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH--HHHHHH
Confidence 56888888998888887655 2222333221 46677888888888899999999999998764443222 345788
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc-HHHHHHhhcCCCHHHHHHHHHHHHHhcccCC---hHhH
Q 008827 295 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG-VKLLVQLSKSMDSTIRLNALRALRNLIFLAE---DKCK 370 (552)
Q Consensus 295 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~~~~ 370 (552)
|.|++.+.++...++..|..+|..++...+... .. .+.+.....+.++.+|..++..+..+....+ +...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 999999999999999999999999987654111 22 5666778888999999999998888765433 2222
Q ss_pred HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHH
Q 008827 371 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 413 (552)
Q Consensus 371 ~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 413 (552)
....-....+.+...+.|++++++..|-.++..+....++...
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 2221234677888999999999999999998888655444333
No 106
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.09 E-value=0.00023 Score=76.87 Aligned_cols=287 Identities=17% Similarity=0.095 Sum_probs=183.7
Q ss_pred CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcC---CHHHHHHHHHhCcHH
Q 008827 133 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAE---KEDMQKLAFEVNGVD 208 (552)
Q Consensus 133 ~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~ 208 (552)
.....|..|...|..++..-. +...-..++|.++.++.++ .+||..|..+|..+... -+.....++..=..|
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 456788899999999988543 3344567999999999965 68999999888877532 111112233333457
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhh
Q 008827 209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 288 (552)
Q Consensus 209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~ 288 (552)
.|-.++.++ ....+|-..+..|+.|+.. . ..+.+.+.-.....++++++.+. ......+ .. .. -
T Consensus 511 ~L~~l~~d~-~~~~vRiayAsnla~LA~t--A--~rFle~~q~~~~~g~~n~~nset-------~~~~~~~-~~-~~--~ 574 (1431)
T KOG1240|consen 511 HLNHLLNDS-SAQIVRIAYASNLAQLAKT--A--YRFLELTQELRQAGMLNDPNSET-------APEQNYN-TE-LQ--A 574 (1431)
T ss_pred hhHhhhccC-ccceehhhHHhhHHHHHHH--H--HHHHHHHHHHHhcccccCccccc-------ccccccc-hH-HH--H
Confidence 777766664 2356777778888888741 1 22333333333334455544430 0000000 00 00 0
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 368 (552)
.-.++-...+.+|.++++-|+..-...|+-|+..+...+ .+.=.++.|+.+|.+.+..+|..-...+.-++....
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG-- 649 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG-- 649 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--
Confidence 123344556778888888999988888988886554322 123477899999999988888765555544433222
Q ss_pred hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHh
Q 008827 369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 448 (552)
Q Consensus 369 ~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~ 448 (552)
.+-+++..+|.|.+-|.++++.|...|++++.-|+...--...++.+ +++....+|-+ |+.=|+..++..|..
T Consensus 650 --~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~----i~~~v~PlL~h-PN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 650 --WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD----ILQDVLPLLCH-PNLWIRRAVLGIIAA 722 (1431)
T ss_pred --eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH----HHHhhhhheeC-chHHHHHHHHHHHHH
Confidence 23346678899999999999999999999999998664222223333 44555555656 888899999998887
Q ss_pred hcC
Q 008827 449 VAT 451 (552)
Q Consensus 449 la~ 451 (552)
++.
T Consensus 723 ~~~ 725 (1431)
T KOG1240|consen 723 IAR 725 (1431)
T ss_pred HHh
Confidence 764
No 107
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.05 E-value=2.6e-05 Score=60.45 Aligned_cols=86 Identities=24% Similarity=0.314 Sum_probs=70.4
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827 251 LKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 329 (552)
Q Consensus 251 l~~lv~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 329 (552)
+|.|++.| +++++.+|..++.+|+.+ .....++.|+.+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL------------GDPEAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57889988 899999999999999733 23366899999999999999999999999762
Q ss_pred HHhhCcHHHHHHhhcCC-CHHHHHHHHHHHH
Q 008827 330 FIRLGGVKLLVQLSKSM-DSTIRLNALRALR 359 (552)
Q Consensus 330 ~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~ 359 (552)
....++.|.+++.++ +..+|..|+.+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 235889999988875 4567899998875
No 108
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.0031 Score=61.91 Aligned_cols=472 Identities=15% Similarity=0.167 Sum_probs=229.5
Q ss_pred cchHHHHHHHHhhcCChhhHHHHHh----------cCchHHHHHh-hcC-CHHHHHHHHHHHHHHhcCChhhhhhhcccc
Q 008827 51 NVSGLGASIISHSCKTSLEQKLLFD----------AGVLKRLTSL-LGG-SLIQRDASLESIATIFKNNPEVVSQFVGPD 118 (552)
Q Consensus 51 ~~~~~a~~~l~~~~~~~~~~~~l~~----------~g~i~~L~~l-L~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 118 (552)
.++..|.-++....+.-+ |..+.. .|+-|.|+.+ |+. +++-|.-|+..+..+.+........-.++.
T Consensus 11 kvr~~al~~~~~~~~~~~-~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 11 KVRQGALVCFLSTIKSIE-KKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHhhHHHHHHHHHhhhh-hhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 455555555555543222 333332 3555554433 444 678888889888888766544422211111
Q ss_pred CCcc----------HH----HH-HHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhch
Q 008827 119 TGRT----------LS----CI-IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDE 182 (552)
Q Consensus 119 ~~~~----------l~----~l-~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~ 182 (552)
+... +. .+ ..+-....+.+-....+||.++.+..+-+..+.-....+...+-++++ .++.|+..
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs 169 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS 169 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence 1111 11 11 123456667777778899999988776543333333344444455555 45667766
Q ss_pred HHHHHHHhhcCC---HHHHHHHHHh--------------CcH------HHHHHhhhcCC---------------------
Q 008827 183 ASFAFSSLIAEK---EDMQKLAFEV--------------NGV------DKLYNHLQKGS--------------------- 218 (552)
Q Consensus 183 a~~~L~~l~~~~---~~~~~~~~~~--------------~~i------~~L~~~L~~~~--------------------- 218 (552)
+...+.-+.+.. |+.+-.+-.. +.. +.+.+ +..++
T Consensus 170 ~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~i~~~~~i~~~~ 248 (728)
T KOG4535|consen 170 SLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEE-TSVSSPKGSSEPCWLIRLCISIVVLP 248 (728)
T ss_pred HHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhh-hccCCccCCCCCcceeeeeeeeeecC
Confidence 666665554322 2221111000 000 11111 10000
Q ss_pred ------------------CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccc
Q 008827 219 ------------------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSI 280 (552)
Q Consensus 219 ------------------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~ 280 (552)
....+|..++..|..++..-.-.+. ....+...+...+.+..+.++..+..++..+....
T Consensus 249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~--~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~l 326 (728)
T KOG4535|consen 249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQA--YLMELGRVICKCMGEADPSIQLHGAKLLEELGTGL 326 (728)
T ss_pred CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHH
Confidence 0011344455555555432111111 11223334444556778899999999888875431
Q ss_pred c-----cccchhhhccCcHHHHH-----Hh-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh----cC
Q 008827 281 K-----NLSAGSFMNETIVIPLV-----RL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS----KS 345 (552)
Q Consensus 281 ~-----~~~~~~~~~~~~i~~Lv-----~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll----~~ 345 (552)
. ........+..+...+. .. -++..+..+..+|.++.++....... +..|--....-++ .+
T Consensus 327 v~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~ 402 (728)
T KOG4535|consen 327 IQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDS 402 (728)
T ss_pred hhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccch
Confidence 1 11111011111111111 01 12234567788888888876422110 0011111111111 22
Q ss_pred CCHHHHHHHHHHHHHhcccCChHhHH-HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC----Ccc---hHHHHHh
Q 008827 346 MDSTIRLNALRALRNLIFLAEDKCKE-EIFMELTASLLASLICDPEPSVQEQALALVRNLVDG----RIN---SVEYIFA 417 (552)
Q Consensus 346 ~~~~v~~~a~~aL~~l~~~~~~~~~~-~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~i~~ 417 (552)
.+.-++..|++++.-+.-+.. .+. ...-....+.+...+.+..-..|+++.|.++|++.. -|. ..+.+..
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~--lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPC--LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred HHHHHHHHHHhhceeEEeccc--hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 334467777777776654322 232 333445566777777888889999999999999753 221 1222211
Q ss_pred hcCchHHHHHHH--hcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHH-HhhcCCChhHHHHHHHH
Q 008827 418 EDGIILDAVGRQ--LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII-KFLQSNDSRLRTAAVWA 494 (552)
Q Consensus 418 ~~~~~~~~l~~~--L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv-~lL~~~~~~~~~~a~~~ 494 (552)
. .+..+.+. ..+..+.+|+..+..+|+|+.. ..+.+.+--+.....+.+..+. ..+-..+..||-+||.+
T Consensus 481 ~---ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya 553 (728)
T KOG4535|consen 481 L---LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYA 553 (728)
T ss_pred H---HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHH
Confidence 1 22222221 1223467899999999998763 1221211000000011112221 22234678999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC-CCccHHHHHHHHHH
Q 008827 495 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALE 542 (552)
Q Consensus 495 l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~al~ 542 (552)
++||..+.. .+-+-... ...+.+.|..|+.+ .+-.+|-+|+.||.
T Consensus 554 ~gNLfkn~a--~~lq~~~w-A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 554 MGNLFKNPA--LPLQTAPW-ASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHhhcCcc--ccccCCCc-hHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 999996421 10000000 11245677777754 56788888888874
No 109
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.03 E-value=1.2e-05 Score=51.97 Aligned_cols=39 Identities=36% Similarity=0.473 Sum_probs=36.4
Q ss_pred chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 324 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 324 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
+++++.+++.|+++.|+++++++++.++.+|+|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999996
No 110
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00031 Score=71.32 Aligned_cols=255 Identities=16% Similarity=0.125 Sum_probs=161.9
Q ss_pred chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCC-HHHHHHHHHHHHHHhcCChh------
Q 008827 37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS-LIQRDASLESIATIFKNNPE------ 109 (552)
Q Consensus 37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-~~v~~~al~~L~~l~~~~~~------ 109 (552)
+...+..+..+.+..|+..|+..+-.+.....-... .....+.++..+ ..||.+|+..+.....-.+.
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 344466666666666666666665554432111111 234566677764 58999998887666543311
Q ss_pred hhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHH
Q 008827 110 VVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSS 189 (552)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~ 189 (552)
...++ ....+..+...++|....||..|++.|+.+-..+. .++..-.=..+++-+..............++
T Consensus 274 ~e~kl----~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-----e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~ 344 (823)
T KOG2259|consen 274 EEEKL----KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-----EIIQQTLDKKLMSRLRRKRTAHKRPKALYSS 344 (823)
T ss_pred hhhhh----HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-----HHHHHHHHHHHhhhhhhhhhcccchHHHHhc
Confidence 01111 13567888899999999999999999998866432 2222222233333111000001111111111
Q ss_pred h--h------------cCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHH
Q 008827 190 L--I------------AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV 255 (552)
Q Consensus 190 l--~------------~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv 255 (552)
- + .+++ -...++..|+--.++.-|.++. .++|.+|+..++.|+...+.... ..+..|+
T Consensus 345 GewSsGk~~~advpsee~d~-~~~siI~sGACGA~VhGlEDEf--~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLv 416 (823)
T KOG2259|consen 345 GEWSSGKEWNADVPSEEDDE-EEESIIPSGACGALVHGLEDEF--YEVRRAAVASLCSLATSSPGFAV-----RALDFLV 416 (823)
T ss_pred CCcccCccccccCchhhccc-cccccccccccceeeeechHHH--HHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHH
Confidence 1 0 0111 1133566777777887777763 78999999999999987665433 3588999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 008827 256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV 320 (552)
Q Consensus 256 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 320 (552)
.+++++...||..|..+|..++.+ - -.++..++.++..|.+.++++|++....|++.-
T Consensus 417 DMfNDE~~~VRL~ai~aL~~Is~~-l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 417 DMFNDEIEVVRLKAIFALTMISVH-L------AIREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHH-h------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999999999877 2 234567889999999999999999999888754
No 111
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.01 E-value=0.0017 Score=64.35 Aligned_cols=238 Identities=14% Similarity=0.084 Sum_probs=154.3
Q ss_pred HHhHHHHHH-HhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChh
Q 008827 162 KTKLINNLL-ELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 240 (552)
Q Consensus 162 ~~g~i~~Lv-~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~ 240 (552)
.....+.+. -++.++..++..+-+++.++..+.... +.+.+.+.--.++..|........-|++|++.+..+......
T Consensus 23 ~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 23 LSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 344555555 355667889999999999998877665 445555544455555655544455688999888877653211
Q ss_pred HHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 008827 241 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV 320 (552)
Q Consensus 241 ~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 320 (552)
. .....|++..++...++.+...|..+..+|..++...+.+ +...|++..|++.+-++..++.+..+.++..+.
T Consensus 102 ~--~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l----v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 102 P--KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL----VAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred c--ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH----HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 1 1235578899999999999999999999999998875543 467899999999998877778899999999998
Q ss_pred cCCchhHHHHHhhCcHHHHHHhhcC-------CCHH--HHHHHHHHHHHhcc-cCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827 321 VDFTTRRSTFIRLGGVKLLVQLSKS-------MDST--IRLNALRALRNLIF-LAEDKCKEEIFMELTASLLASLICDPE 390 (552)
Q Consensus 321 ~~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~--v~~~a~~aL~~l~~-~~~~~~~~~i~~~~~~~~l~~ll~~~~ 390 (552)
. .+..|+.+...--++.++.-..+ ++.+ .-..+..++..+.+ +.+- .---.-+..++..++..|..++
T Consensus 176 d-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL-l~l~~~~~~~lksLv~~L~~p~ 253 (371)
T PF14664_consen 176 D-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL-LYLSMNDFRGLKSLVDSLRLPN 253 (371)
T ss_pred C-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce-eeeecCCchHHHHHHHHHcCCC
Confidence 5 45555544432233333332221 1221 22233334433322 1100 0000000135777888999999
Q ss_pred hhHHHHHHHHHHHhhcCC
Q 008827 391 PSVQEQALALVRNLVDGR 408 (552)
Q Consensus 391 ~~v~~~a~~~L~~l~~~~ 408 (552)
++++...+.++..+..-.
T Consensus 254 ~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 254 PEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 999999999998887654
No 112
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.00 E-value=0.013 Score=59.82 Aligned_cols=349 Identities=15% Similarity=0.110 Sum_probs=193.6
Q ss_pred hHHHHHhhcCCCC---cchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhh-
Q 008827 38 MEFLLSLLNNESE---NVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV- 111 (552)
Q Consensus 38 i~~l~~ll~~~~~---~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~- 111 (552)
+|.++..|.+.+. ...+....+|..+|..+.--+.+.. ..+..+-...++ +...-...+.++..+........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 3667788875544 5668888999999976664332222 333444444443 33455667778877654322211
Q ss_pred -hhhccccCCccHHHHHHHHh-----cC--ChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---------
Q 008827 112 -SQFVGPDTGRTLSCIIEIVK-----DR--FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--------- 174 (552)
Q Consensus 112 -~~~~~~~~~~~l~~l~~ll~-----~~--~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--------- 174 (552)
.......+...++.++++.- +. +..+-..++..+..+.+.-+...+ ...+..+.+++-
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-----~~~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-----QEILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHHccccccCCCC
Confidence 00000001225556665432 11 234444555655555554432222 233444444432
Q ss_pred -CCCc---hhch----HHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC--ChhHHHH
Q 008827 175 -DPGR---VGDE----ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK--LECCRSR 244 (552)
Q Consensus 175 -~~~~---v~~~----a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~ 244 (552)
+... .+.. ...++..+-.+... . .....+..++.+..+.. ++..+..++..++.+..+ +++.-.
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~---~-~~~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvNK~~~~~~l~- 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSL---P-DLEELLQSLLNLALSSE-DEFSRLAALQLLASLVNKWPDDDDLD- 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCc---c-CHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCChhhHH-
Confidence 1110 1111 12233333222110 0 01124567777666553 477888889999888764 222111
Q ss_pred HHhcccHHHHHHhc-CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827 245 CLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 245 ~~~~~~l~~lv~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 323 (552)
..+..+...+ ...+...+..+...+..+++.- -.|.. -....++..|++++.+ +++...|+.++.-+..+.
T Consensus 229 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL-v~R~~-~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~ 300 (415)
T PF12460_consen 229 ----EFLDSLLQSISSSEDSELRPQALEILIWITKAL-VMRGH-PLATELLDKLLELLSS--PELGQQAAKAFGILLSDS 300 (415)
T ss_pred ----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH-HHcCC-chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc
Confidence 2333333333 3334444445544444443320 01111 1223456778888876 778899999999888773
Q ss_pred chh-------------HHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH--hhcHHHHHhhhcC
Q 008827 324 TTR-------------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICD 388 (552)
Q Consensus 324 ~~~-------------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~ll~~ 388 (552)
+.. |+.+. ...+|.|++..+..+...+.+-+.||.++..+.+. ..+.. ...+|.+++-|..
T Consensus 301 ~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 301 DDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK---SVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred HHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCC
Confidence 332 33333 35788888888887777899999999999886653 22222 2368889999999
Q ss_pred CChhHHHHHHHHHHHhhcCCcc
Q 008827 389 PEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 389 ~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
+|++++..++.+|..+....++
T Consensus 377 ~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CCHHHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999877654
No 113
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.00 E-value=1.6e-05 Score=51.44 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=37.9
Q ss_pred ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827 238 LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 278 (552)
Q Consensus 238 ~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~ 278 (552)
+++.+..+++.|++|.|+++|++++.+++..|+++|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35778899999999999999999999999999999999974
No 114
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.99 E-value=2.8e-05 Score=54.08 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhh
Q 008827 436 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL 498 (552)
Q Consensus 436 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l 498 (552)
|.++..++++|++++...+....... ..+++.|..+|+++++.||.+|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~--------~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL--------PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH--------HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH--------HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56899999999999887766555554 57889999999999999999999999975
No 115
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.99 E-value=0.054 Score=60.84 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=89.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCCccc-ccccchHHHHHhhcCCCCcchHHHHHHHHhhcC-ChhhHHHHHhcCchH
Q 008827 3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDF-LQEENMEFLLSLLNNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLK 80 (552)
Q Consensus 3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~-~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~-~~~~~~~l~~~g~i~ 80 (552)
|.++...+.-.|++||..+...+ +.+ -.+++-..+-.-+.+.+.+|+++|...+....- .++.-...++ .
T Consensus 825 l~e~~ialRtkAlKclS~ive~D----p~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~----~ 896 (1692)
T KOG1020|consen 825 LGENAIALRTKALKCLSMIVEAD----PSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYD----Q 896 (1692)
T ss_pred hcCchHHHHHHHHHHHHHHHhcC----hHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH----H
Confidence 45666777788899998886543 233 366666777777778889999999999986321 2221111111 1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827 81 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS 152 (552)
Q Consensus 81 ~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~ 152 (552)
..-+.+..+..||..+++.++.+|..+|+... + ......+++-..|+...++..+...+.++=...
T Consensus 897 i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i-----~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 897 IIERILDTGVSVRKRVIKILRDICEETPDFSK-I-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-H-----HHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 22233344568999999999999988877642 2 234445555566777778888888888765433
No 116
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0014 Score=69.86 Aligned_cols=289 Identities=13% Similarity=0.128 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhcCChhhhhhhcccc-CCccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHH
Q 008827 94 DASLESIATIFKNNPEVVSQFVGPD-TGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE 171 (552)
Q Consensus 94 ~~al~~L~~l~~~~~~~~~~~~~~~-~~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ 171 (552)
+.++.+|.++...+|+....+.... --+-++.++..++ ..++.++..|...+..+....++ ...++..|.+..|+.
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C--v~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC--VTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH--HHHHHhhhHHHHHHH
Confidence 4678899999888887654332100 0233455555555 68899999999998877665543 456778889999999
Q ss_pred hcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC---hhHHHHHHh-
Q 008827 172 LLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL---ECCRSRCLS- 247 (552)
Q Consensus 172 ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~---~~~~~~~~~- 247 (552)
+|..-+..|..+..+|..|++.. ...+...++|++.-+.+++-.++ ++.+|.+++..++.+..+. +..+-.+++
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTN-SDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 99877888888999998888654 44566778888877777665552 4555555555555543321 111100000
Q ss_pred --------------------------------------------------------------------------------
Q 008827 248 -------------------------------------------------------------------------------- 247 (552)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (552)
T Consensus 1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence
Q ss_pred -----------------------cccHHHHHHhcCCCCH--HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc
Q 008827 248 -----------------------LQVLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 302 (552)
Q Consensus 248 -----------------------~~~l~~lv~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~ 302 (552)
.+.++.+.+++...++ ..-..-..++..|-+..+++.+. +-.-|.+|.++..+.
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADq-ip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQ-LPSLGYLPKFCTAMC 2057 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhh-CCCccchHHHHHHHH
Confidence 1122222333322211 11122223344444444555544 566799999999987
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l 382 (552)
..+..+-..|...|..++.+ .-+.+.+.....+..++..++..... ---|+.+|..+......+.-.+.+..|.++.|
T Consensus 2058 ~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~~~-~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyL 2135 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQPSL-MGLAAEALKRLMKRNTGELVAQMLKCGLVPYL 2135 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcchH-HHHHHHHHHHHHHHhHHHHHHHHhccCcHHHH
Confidence 66666668899999999864 45566777777777788777654333 33677788777553323344556667889999
Q ss_pred HhhhcCC
Q 008827 383 ASLICDP 389 (552)
Q Consensus 383 ~~ll~~~ 389 (552)
+++|++.
T Consensus 2136 L~LLd~~ 2142 (2235)
T KOG1789|consen 2136 LQLLDSS 2142 (2235)
T ss_pred HHHhccc
Confidence 9999753
No 117
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.011 Score=66.12 Aligned_cols=396 Identities=12% Similarity=0.066 Sum_probs=202.3
Q ss_pred ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhh--h
Q 008827 35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEV--V 111 (552)
Q Consensus 35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~--~ 111 (552)
...||.|.+.=-+++..+|.+-..|=--+..+...-...+-....+-|+.-|.+ .++||+++.-+|..|....+.. .
T Consensus 997 ~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 997 KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence 356777777767888888887777665554332222222223344555555555 6899999999999998775443 1
Q ss_pred hhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC------CCcchhhhhHHhHHHHHHHh--cCCCCchhchH
Q 008827 112 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS------PCYLQDVGIKTKLINNLLEL--LDDPGRVGDEA 183 (552)
Q Consensus 112 ~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~------~~~~~~~~~~~g~i~~Lv~l--l~~~~~v~~~a 183 (552)
+.+ ......+++-.+|-...||.+|-++...+++.- .+...-..+-..++|.|+.- +.+-+++|..+
T Consensus 1077 e~l-----pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1077 EKL-----PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 111 223344455666777788988766655554321 11111112223345554431 22335788888
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChh----------hHHHHHHHHHH-hhcCChhHHHHHHh-----
Q 008827 184 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPR----------RFEGILLALAD-MCSKLECCRSRCLS----- 247 (552)
Q Consensus 184 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~----------~~~~a~~aL~~-l~~~~~~~~~~~~~----- 247 (552)
..++..|+......- ..+-...+|.|++....-. +.. +...++..+.. .+...+ ..+.+-.
T Consensus 1152 i~tl~dl~Kssg~~l-kP~~~~LIp~ll~~~s~lE-~~vLnYls~r~~~~e~ealDt~R~s~akssp-mmeTi~~ci~~i 1228 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKEL-KPHFPKLIPLLLNAYSELE-PQVLNYLSLRLINIETEALDTLRASAAKSSP-MMETINKCINYI 1228 (1702)
T ss_pred HHHHHHHHHhchhhh-cchhhHHHHHHHHHccccc-hHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc-HHHHHHHHHHhh
Confidence 899999987655421 1222345666666443321 111 11222222221 122222 1111111
Q ss_pred -----cccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827 248 -----LQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV 321 (552)
Q Consensus 248 -----~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 321 (552)
...+|.+.++++.+ ....|-.++..+..|+.....-.+. .....+..++..+++.++.++.+.+.|.+.++.
T Consensus 1229 D~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~~g~~dRNesv~kafAsAmG~L~k 1306 (1702)
T KOG0915|consen 1229 DISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALFPGAKDRNESVRKAFASAMGYLAK 1306 (1702)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHhhccccccHHHHHHHHHHHHHHHh
Confidence 24778888888754 4456667777777775432221111 233456666667778899999999999999986
Q ss_pred CCch-hHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH---hhcHHHHHhhhcCCChhHHHHH
Q 008827 322 DFTT-RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM---ELTASLLASLICDPEPSVQEQA 397 (552)
Q Consensus 322 ~~~~-~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~---~~~~~~l~~ll~~~~~~v~~~a 397 (552)
-..+ ..+.+ +..++..+..+.+..+..++..+.+++.+. ..++. ...+|.++=-....+.+.+.-=
T Consensus 1307 ~Ss~dq~qKL-----ie~~l~~~l~k~es~~siscatis~Ian~s-----~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw 1376 (1702)
T KOG0915|consen 1307 FSSPDQMQKL-----IETLLADLLGKDESLKSISCATISNIANYS-----QEMLKNYASAILPLIFLAMHEEEKANQELW 1376 (1702)
T ss_pred cCChHHHHHH-----HHHHHHHHhccCCCccchhHHHHHHHHHhh-----HHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5444 23333 334443332222223355566666654422 12221 1123333222222212222211
Q ss_pred HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827 398 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 453 (552)
Q Consensus 398 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~ 453 (552)
-.....+..+....+.....+ ++..+.....++....++..++.++..++.+.
T Consensus 1377 ~dvW~e~vsggagtvrl~~~e---iLn~iceni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1377 NDVWAELVSGGAGTVRLYLLE---ILNLICENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred HHHHHHhCCCCcchhhhhHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHcccc
Confidence 222223333332222211111 33333333333255788888888888877644
No 118
>PF05536 Neurochondrin: Neurochondrin
Probab=97.93 E-value=0.002 Score=67.36 Aligned_cols=238 Identities=14% Similarity=0.078 Sum_probs=156.3
Q ss_pred cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH---HHHHHhcccHHHHHHhcCC-------CCHHHHHHHHHHHHH
Q 008827 206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC---RSRCLSLQVLKLVVDALAH-------DSSDVRSAACMCLRS 275 (552)
Q Consensus 206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~~~~l~~lv~~L~~-------~~~~v~~~a~~~L~~ 275 (552)
.+.+-+++|+..+ ..-|-.++..+..++..++.. ++.+.+.=+.+.+-++|++ +....+.-|...|..
T Consensus 6 ~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3566777788774 446788888888988765532 3457777678888888886 345677888889999
Q ss_pred hhcccccccchhhhccCcHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHH
Q 008827 276 VSRSIKNLSAGSFMNETIVIPLVRLLDDTST-AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNA 354 (552)
Q Consensus 276 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a 354 (552)
++.. ++.... -.--+-+|.|+..+.+.+. ++...|..+|..++ ..+..++.+++.|+++.|.+.+.+ .+.....+
T Consensus 84 f~~~-~~~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 84 FCRD-PELASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred HcCC-hhhhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHH
Confidence 9886 443322 1223679999999976655 99999999999999 577888899999999999999887 55668888
Q ss_pred HHHHHHhcccCChHhH---HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch-HHHHHhh--cCchHHHHHH
Q 008827 355 LRALRNLIFLAEDKCK---EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS-VEYIFAE--DGIILDAVGR 428 (552)
Q Consensus 355 ~~aL~~l~~~~~~~~~---~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~--~~~~~~~l~~ 428 (552)
+.++.+++...+.+.- ...+ ...++.+...+.......+-..+..|.++....+.. .....+. ...+...+..
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 8888888664432111 1111 123344555555555556667788888877655211 0000000 0014555666
Q ss_pred HhcccCchhHHHHHHHHHHhhc
Q 008827 429 QLRIASKAEIEIQGMYVLGNVA 450 (552)
Q Consensus 429 ~L~~~~~~~v~~~a~~~L~~la 450 (552)
+|++-..++-+..++.....+.
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 6666445556666555555444
No 119
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0036 Score=64.80 Aligned_cols=319 Identities=13% Similarity=0.145 Sum_probs=178.6
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-C-CCchhchHHHHHHHhhcCCHHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASFAFSSLIAEKEDM 197 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~-~~~v~~~a~~~L~~l~~~~~~~ 197 (552)
+..+|.+..-+.+.++-||.+|..++..+++... +.. ..+=+.+-++|. + ++.-+.+|.-.|... +++
T Consensus 133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~-----pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~E- 202 (948)
T KOG1058|consen 133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLI-----PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPE- 202 (948)
T ss_pred hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhc-----CChHHHHHHHHHhccCchhHHHHHHHHHhc---CHH-
Confidence 4456777888999999999999999999887532 111 112222333443 2 222333443333322 222
Q ss_pred HHHHHHhCcHHHHHHhhhc-CCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827 198 QKLAFEVNGVDKLYNHLQK-GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 198 ~~~~~~~~~i~~L~~~L~~-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l 276 (552)
.++.-|...+.+ ++..+..+...+..+...|..++.-+. ..+..+..+|.+.++.|+..|+..|..+
T Consensus 203 -------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 203 -------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred -------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence 112222222211 112344566667777777765554433 3578888999988999999999998888
Q ss_pred hcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 355 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~ 355 (552)
+.....+.. ....+++++. .+|..+..-...-|..+..... .++ .|.+--+++.+.+++-++|..++
T Consensus 271 S~~p~alk~-------Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~il-~~l~mDvLrvLss~dldvr~Ktl 338 (948)
T KOG1058|consen 271 SNDPTALKA-------AASTYIDLLVKESDNNVKLIVLDRLSELKALHE----KIL-QGLIMDVLRVLSSPDLDVRSKTL 338 (948)
T ss_pred cCCHHHHHH-------HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----HHH-HHHHHHHHHHcCcccccHHHHHH
Confidence 766332221 1233444442 2333343333333333332111 222 36667778899999999999999
Q ss_pred HHHHHhcccCChHhHHHHHHhhcHHHHH-hhhc------CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH
Q 008827 356 RALRNLIFLAEDKCKEEIFMELTASLLA-SLIC------DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428 (552)
Q Consensus 356 ~aL~~l~~~~~~~~~~~i~~~~~~~~l~-~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~ 428 (552)
.....+....+. .+++. .|. ++.+ +++.+.+.--+.++..++..-|+.... +++.++.
T Consensus 339 di~ldLvssrNv---ediv~-----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-------vV~~ll~ 403 (948)
T KOG1058|consen 339 DIALDLVSSRNV---EDIVQ-----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-------VVSLLLD 403 (948)
T ss_pred HHHHhhhhhccH---HHHHH-----HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-------HHHHHHH
Confidence 877777654331 11111 111 1111 223345666677777777766654443 5667777
Q ss_pred HhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCChhHHHHHHHHHHhhcC
Q 008827 429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 429 ~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~ 500 (552)
.+.+ .++.-....+..+.......+..|..+++ .++.-+. =...++...|+|.++..+.
T Consensus 404 fisD-~N~~aas~vl~FvrE~iek~p~Lr~~ii~------------~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 404 FISD-SNEAAASDVLMFVREAIEKFPNLRASIIE------------KLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred Hhcc-CCHHHHHHHHHHHHHHHHhCchHHHHHHH------------HHHHhhhhhcccccchhHHHHHHHHHh
Confidence 7766 55554444555555444455555655554 2222221 1345678889999998885
No 120
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.91 E-value=0.00016 Score=58.34 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=107.8
Q ss_pred cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827 206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 285 (552)
Q Consensus 206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 285 (552)
-+..|++-++.. .+.+.+++.+--|++.+- +|.+..-+.+.+++..++..|..++..+..-+.+.|+|++-...+..
T Consensus 17 Ylq~LV~efq~t-t~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~- 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTT-TNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK- 93 (173)
T ss_pred HHHHHHHHHHHh-ccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH-
Confidence 356677666665 356778888888888885 56777888899999999999999999999999999999987744332
Q ss_pred hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC
Q 008827 286 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS 345 (552)
Q Consensus 286 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~ 345 (552)
- +.+++++|..+..+.++...+...|+.++..+.......+..+....++..+.++-.+
T Consensus 94 ~-I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s 152 (173)
T KOG4646|consen 94 F-IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRES 152 (173)
T ss_pred H-HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHH
Confidence 2 6889999999999999999999999999999887766666666655555555555433
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.87 E-value=4e-05 Score=59.38 Aligned_cols=87 Identities=24% Similarity=0.253 Sum_probs=70.1
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHH
Q 008827 336 VKLLVQLS-KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY 414 (552)
Q Consensus 336 i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 414 (552)
++.|++.+ +++++.+|..++++|+.+.. ...++.+.++++++++.++..++++|+.+-. ++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~~---- 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD--PE---- 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--HH----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--HH----
Confidence 57888888 78899999999999995521 1358899999999999999999999998742 11
Q ss_pred HHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827 415 IFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG 447 (552)
Q Consensus 415 i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~ 447 (552)
.++.|.+.+.++++..++..++.+|+
T Consensus 63 -------~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 -------AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 67888888888566778999988875
No 122
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0044 Score=64.13 Aligned_cols=348 Identities=16% Similarity=0.157 Sum_probs=203.4
Q ss_pred HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcH
Q 008827 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV 207 (552)
Q Consensus 129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 207 (552)
-++|++..+|-...++|+.+- +...-...+|.+...|. ..+.||..|..++..+-...... -.++-
T Consensus 107 DLQHPNEyiRG~TLRFLckLk--------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L-----~pDap 173 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKLK--------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL-----IPDAP 173 (948)
T ss_pred hccCchHhhcchhhhhhhhcC--------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh-----cCChH
Confidence 567899999988888877552 22334567787777787 45789999887776654332111 11222
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchh
Q 008827 208 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 287 (552)
Q Consensus 208 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~ 287 (552)
+.+-++|... .+|..+.+|+..|...- ++.. ...+...+.-..+-++.++...+..|+..+...+.
T Consensus 174 eLi~~fL~~e-~DpsCkRNAFi~L~~~D---~ErA-----l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----- 239 (948)
T KOG1058|consen 174 ELIESFLLTE-QDPSCKRNAFLMLFTTD---PERA-----LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----- 239 (948)
T ss_pred HHHHHHHHhc-cCchhHHHHHHHHHhcC---HHHH-----HHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH-----
Confidence 3333455554 46778888877766542 2211 01122222333344577788888888877764222
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC
Q 008827 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE 366 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~ 366 (552)
....++..+..+|+++++.++.+|+++|.++..+....+ -+...+++++-. ++-.++.-.+.-|..+.
T Consensus 240 -~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk------~Aa~~~i~l~~kesdnnvklIvldrl~~l~---- 308 (948)
T KOG1058|consen 240 -EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK------AAASTYIDLLVKESDNNVKLIVLDRLSELK---- 308 (948)
T ss_pred -HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH------HHHHHHHHHHHhccCcchhhhhHHHHHHHh----
Confidence 345778999999999999999999999999886554333 234455555443 33334433333333332
Q ss_pred hHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh-cc-----cCchhHHH
Q 008827 367 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL-RI-----ASKAEIEI 440 (552)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L-~~-----~~~~~v~~ 440 (552)
...+.+++... --++++|.++|-+++.+++.+.-.+..+.+ ++. ++..|.+=+ .+ ..+.+-+.
T Consensus 309 -~~~~~il~~l~-mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-------iv~~Lkke~~kT~~~e~d~~~~yRq 377 (948)
T KOG1058|consen 309 -ALHEKILQGLI-MDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-------IVQFLKKEVMKTHNEESDDNGKYRQ 377 (948)
T ss_pred -hhhHHHHHHHH-HHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-------HHHHHHHHHHhccccccccchHHHH
Confidence 12334444433 346788899999999999999888876643 222 223333222 11 12334566
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHH
Q 008827 441 QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS 520 (552)
Q Consensus 441 ~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~ 520 (552)
.-..++-.++...++.. ..+++.|++++.+.|+..-......+..... ..-.| ...+++
T Consensus 378 lLiktih~cav~Fp~~a------------atvV~~ll~fisD~N~~aas~vl~FvrE~ie--------k~p~L-r~~ii~ 436 (948)
T KOG1058|consen 378 LLIKTIHACAVKFPEVA------------ATVVSLLLDFISDSNEAAASDVLMFVREAIE--------KFPNL-RASIIE 436 (948)
T ss_pred HHHHHHHHHhhcChHHH------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH--------hCchH-HHHHHH
Confidence 66777777777666432 4567899999999987554444444443331 11111 223455
Q ss_pred HHHhhhc-CCCccHHHHHHHHHHHHhh
Q 008827 521 HVKNMVN-DPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 521 ~L~~ll~-~~~~~v~~~a~~al~~~~~ 546 (552)
.|++-+. =++...-+-|.|.++...+
T Consensus 437 ~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 437 KLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHhhhhhcccccchhHHHHHHHHHh
Confidence 5555331 1234444566677665543
No 123
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.83 E-value=0.00052 Score=63.92 Aligned_cols=180 Identities=14% Similarity=0.178 Sum_probs=113.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC--chhHHHHHh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh
Q 008827 302 DDTSTAVQVAALGAISNIVVDF--TTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL 377 (552)
Q Consensus 302 ~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~ 377 (552)
.+.+++.|..|..-|..++.+. ......+.+ ...+..+...+.+....+...|+.++..++........ -.-..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~--~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE--PYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH--HHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH--HHHHH
Confidence 5679999999999999988755 222222222 14556777777777788899999999988764432222 22345
Q ss_pred cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh---
Q 008827 378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE--- 454 (552)
Q Consensus 378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~--- 454 (552)
.++.|++.+.++..-+++.|..+|..++...+. ...+ +.+.+.....+ +++.++..++..+..+....+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~~~~------~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY-SPKI------LLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HH------HHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-HHHH------HHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchH
Confidence 688899999999999999999999999876540 0111 14455555555 899999999998888876433
Q ss_pred hhHH--HHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 455 SHKE--AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 455 ~~~~--~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
.... ..+ ..+++.+...+.++++++|..|-.++..+.
T Consensus 167 ~~l~~~~~~--------~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 167 SVLQKSAFL--------KQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp GGG--HHHH--------HHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred hhhcccchH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 1111 111 356788999999999999999998888886
No 124
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0023 Score=58.12 Aligned_cols=194 Identities=20% Similarity=0.184 Sum_probs=114.6
Q ss_pred ccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccC--
Q 008827 290 NETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA-- 365 (552)
Q Consensus 290 ~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 365 (552)
+...+|.|+..|.+ ..|-+|..|..+|+.+-. .+.++.+-++.+++...+++.+..|+..+-...
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 34566777777754 356666777777766541 133455555555555666665555555542110
Q ss_pred ------------ChHhHHHHHHhhcHHHHHhhhcCC-Ch-hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc
Q 008827 366 ------------EDKCKEEIFMELTASLLASLICDP-EP-SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR 431 (552)
Q Consensus 366 ------------~~~~~~~i~~~~~~~~l~~ll~~~-~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~ 431 (552)
+|.-. .....+..+-..+.+. .+ --+..++-.|+|+-. .+ .+..+...+.
T Consensus 134 ~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee-----------aI~al~~~l~ 197 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE-----------AINALIDGLA 197 (289)
T ss_pred ccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH-----------HHHHHHHhcc
Confidence 00000 0011122232222222 22 234456666666632 11 3445555555
Q ss_pred ccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC--CChhHHHHHHHHHHhhcCCCCCCCHHH
Q 008827 432 IASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLTCSSSPGSSGR 509 (552)
Q Consensus 432 ~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~ 509 (552)
. .+.-.+..++++++++-.. ..+|.|.+.|.+ .++.||..|+.+|+.++.
T Consensus 198 ~-~SalfrhEvAfVfGQl~s~------------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------- 249 (289)
T KOG0567|consen 198 D-DSALFRHEVAFVFGQLQSP------------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------- 249 (289)
T ss_pred c-chHHHHHHHHHHHhhccch------------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---------
Confidence 5 4666788899999887542 223666666654 568899999999999983
Q ss_pred HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHH
Q 008827 510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544 (552)
Q Consensus 510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~ 544 (552)
...++.|.+.+.|+.+-|++.+..||..+
T Consensus 250 ------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 ------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 12477889999999999999998888654
No 125
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.013 Score=57.16 Aligned_cols=220 Identities=13% Similarity=0.131 Sum_probs=157.9
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC--------cchhhhhHHhHHHHHHHhcCC-CCch------hchHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC--------YLQDVGIKTKLINNLLELLDD-PGRV------GDEAS 184 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~--------~~~~~~~~~g~i~~Lv~ll~~-~~~v------~~~a~ 184 (552)
.+++++++.++.+++.++-.+.+..|..+...+.. ...+..++.++++.|++-+.. +..+ ...+.
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 57889999999999999999999999998764411 134667788999999998861 1122 34556
Q ss_pred HHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC----C
Q 008827 185 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA----H 260 (552)
Q Consensus 185 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~----~ 260 (552)
..+.|+..-.+.....+++.|.+..|++-+.........+..|...++-+..++.+.+...-...++..+++-+. +
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 778899988888888889888888888755544223345677888888777776667777878888888888774 2
Q ss_pred C-----CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHHhh
Q 008827 261 D-----SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT--TRRSTFIRL 333 (552)
Q Consensus 261 ~-----~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~~~~ 333 (552)
+ ..+....-..+|+.+-.... .+.. |....+++...-+++. ..-.+..|..+|-.+..++. ++...+++.
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~-Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~ 360 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPA-NRER-FLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI 360 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChh-hhhh-hhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 2 23556666677777766533 3334 7777777766555655 45567888899988887765 556677777
Q ss_pred CcHHHHHHh
Q 008827 334 GGVKLLVQL 342 (552)
Q Consensus 334 g~i~~L~~l 342 (552)
+++..+..+
T Consensus 361 lGLrtiF~~ 369 (536)
T KOG2734|consen 361 LGLRTIFPL 369 (536)
T ss_pred HhHHHHHHH
Confidence 777777754
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.015 Score=58.48 Aligned_cols=285 Identities=16% Similarity=0.105 Sum_probs=134.9
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 008827 39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 117 (552)
Q Consensus 39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 117 (552)
|.|-+-|++..+++...++..+..++..+-.... -...+..|-.+|++ ....|..|++.|..++.-.|.... .+
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~--~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-vc-- 341 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF--VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-VC-- 341 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-ec--
Confidence 4444555567788888888887776543211111 12346667777776 456789999999999876655421 11
Q ss_pred cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHH
Q 008827 118 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKED 196 (552)
Q Consensus 118 ~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~ 196 (552)
-+.+-.++.|.+..+-..|... +.+.+.+...+.. -..||.++.=++++ .-+-.+|.+.|+.+. |.
T Consensus 342 -----N~evEsLIsd~Nr~IstyAITt---LLKTGt~e~idrL--v~~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~ 408 (898)
T COG5240 342 -----NKEVESLISDENRTISTYAITT---LLKTGTEETIDRL--VNLIPSFVHDMSDGFKIIAIDALRSLSLLF---PS 408 (898)
T ss_pred -----ChhHHHHhhcccccchHHHHHH---HHHcCchhhHHHH--HHHHHHHHHhhccCceEEeHHHHHHHHhhC---cH
Confidence 1233446666666655544443 4444443333222 23344444433332 223344444444332 22
Q ss_pred HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827 197 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 197 ~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l 276 (552)
-+.. .+..|.+.|.+. -..+.+..++.+|.......|+.+.+. +..|-.++.+.. --+-++..|+.|
T Consensus 409 k~~s-----~l~FL~~~L~~e-Gg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDce--y~~I~vrIL~iL 475 (898)
T COG5240 409 KKLS-----YLDFLGSSLLQE-GGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCE--YHQITVRILGIL 475 (898)
T ss_pred HHHH-----HHHHHHHHHHhc-ccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcc--hhHHHHHHHHHh
Confidence 1111 133444433332 123455556666665555555544433 333444443221 112234444444
Q ss_pred hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 356 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 356 (552)
.+..+.... -..++..+..-+-=++.-+|.+|+.||..++.+-.+ .+....+...|-+.+.+.+.++|..|..
T Consensus 476 G~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 476 GREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred cccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 443221111 112223333322223445666666666555433221 1122223334445555566666666666
Q ss_pred HHHHh
Q 008827 357 ALRNL 361 (552)
Q Consensus 357 aL~~l 361 (552)
+|.++
T Consensus 549 ~l~~~ 553 (898)
T COG5240 549 LLRNM 553 (898)
T ss_pred HHHhh
Confidence 66655
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.66 E-value=0.00012 Score=50.88 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827 306 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361 (552)
Q Consensus 306 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 361 (552)
|.+|..|+++|++++...+...+. ....+++.|..++.++++.||.+|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999988766554433 4468999999999999999999999999875
No 128
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.57 E-value=0.0037 Score=52.97 Aligned_cols=132 Identities=13% Similarity=0.200 Sum_probs=105.3
Q ss_pred HHHHhcccHHHHHHhcCCCC------HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHHHH
Q 008827 243 SRCLSLQVLKLVVDALAHDS------SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALG 314 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~~~~------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~ 314 (552)
..+...+|++.|+++++++. .+....+..++..|-.+ +...+. .....++..++.++.. .++.+...|..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 45778899999999998766 36667777888888776 555666 7788899999999974 37899999999
Q ss_pred HHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh
Q 008827 315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME 376 (552)
Q Consensus 315 aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~ 376 (552)
.|-+++..++.....+.+.=-++.|+..++.+++.++.+++..+..+....+++.|+++.+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~ 144 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAET 144 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999987766566666667889999999999999999999888888776665555555443
No 129
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.55 E-value=0.074 Score=54.32 Aligned_cols=187 Identities=14% Similarity=0.157 Sum_probs=115.6
Q ss_pred CcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh-cCCCHHHHHH----HHHHHHHhcccC
Q 008827 292 TIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS-KSMDSTIRLN----ALRALRNLIFLA 365 (552)
Q Consensus 292 ~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~----a~~aL~~l~~~~ 365 (552)
.++..++.+.. .+++..+..++..++-++.-.+... .. ...+..+.... ...+...+.. .+|....+....
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 36677777764 4568889999999988876432211 11 12333333333 2233333444 344444443322
Q ss_pred ChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch--------H-----HHHHhhcCchHHHHHHHhcc
Q 008827 366 EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS--------V-----EYIFAEDGIILDAVGRQLRI 432 (552)
Q Consensus 366 ~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--------~-----~~i~~~~~~~~~~l~~~L~~ 432 (552)
++. .....+.+++++.+ +++...+...+.-+....++. + +.+|.. +++.+++..+.
T Consensus 266 ~~~------~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~---~~p~L~~~~~~ 334 (415)
T PF12460_consen 266 HPL------ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ---VLPKLLEGFKE 334 (415)
T ss_pred Cch------HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH---HHHHHHHHHhh
Confidence 221 12345667777876 566777777777776552221 1 222322 56777766666
Q ss_pred cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 433 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 433 ~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.+.+++...+.+|.++..+-|. ..+..+ -..++|.|++.|..+|.+++..+..++..+..
T Consensus 335 -~~~~~k~~yL~ALs~ll~~vP~--~vl~~~-----l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 335 -ADDEIKSNYLTALSHLLKNVPK--SVLLPE-----LPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred -cChhhHHHHHHHHHHHHhhCCH--HHHHHH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 4555888889999999987663 223331 25788999999999999999999999999985
No 130
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.013 Score=53.47 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=114.9
Q ss_pred cHHHHHHhcCCC--CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827 250 VLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 327 (552)
Q Consensus 250 ~l~~lv~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 327 (552)
.+|.++..+.+. .+.||..|..+|..+. .....+.+-++.+++..++++.+-.|+..+-......+
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~------------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIG------------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhc------------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 466677666643 4566777777775543 12334555555566666666666666655432111000
Q ss_pred ----HHH--------HhhCcHHHHHHhhcCCC-HH-HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhH
Q 008827 328 ----STF--------IRLGGVKLLVQLSKSMD-ST-IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV 393 (552)
Q Consensus 328 ----~~~--------~~~g~i~~L~~ll~~~~-~~-v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v 393 (552)
..+ ...+-+..+-..+.+.+ +. -|..|.+.|.|+-. + ..+..+.+-+..++.-.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E----------eaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E----------EAINALIDGLADDSALF 203 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H----------HHHHHHHHhcccchHHH
Confidence 000 01122444444333332 22 34567777777732 1 13445555566666667
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhh
Q 008827 394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA 472 (552)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~ 472 (552)
+-.+...++.+-... .++.|.+.|.. ..++.|+..|+.+|+.++. + ..
T Consensus 204 rhEvAfVfGQl~s~~-------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e----------------~~ 252 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSPA-------------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E----------------DC 252 (289)
T ss_pred HHHHHHHHhhccchh-------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H----------------HH
Confidence 777777776664321 45555555543 3678999999999999875 2 22
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 473 QSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 473 v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
++.|.+++.+..+-+++.|..++..+-+
T Consensus 253 ~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 253 VEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999988877664
No 131
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0063 Score=64.59 Aligned_cols=167 Identities=13% Similarity=0.163 Sum_probs=122.3
Q ss_pred hcCCCHHHHHHHHH-HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 008827 343 SKSMDSTIRLNALR-ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 421 (552)
Q Consensus 343 l~~~~~~v~~~a~~-aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~ 421 (552)
+.+.+...|..|+. ++..|..+.+ +. ...+-+++.+.+.|.+++.-.-.-+.+.+..+|+. .++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-------ms-sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL----- 92 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-------MS-SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL----- 92 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-------hH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH-----
Confidence 56666666777665 6677766543 11 13455556666888888888888888888888732 222
Q ss_pred hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCC
Q 008827 422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS 501 (552)
Q Consensus 422 ~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~ 501 (552)
+++.+.+=+++ +|+.+|..|+..++.+=. ..++ ..+++.+.+++.++++.||+.|+.++.++-.-
T Consensus 93 avNti~kDl~d-~N~~iR~~AlR~ls~l~~------~el~--------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 93 AVNTIQKDLQD-PNEEIRGFALRTLSLLRV------KELL--------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHHHHHhhccC-CCHHHHHHHHHHHHhcCh------HHHH--------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 45666666777 999999999999987642 2344 35668999999999999999999999998731
Q ss_pred CCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 502 SSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 502 ~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
. .....+.|.+..+..++.|++|.|...|..+|..+-.
T Consensus 158 ----d---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 158 ----D---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred ----C---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 1 2345577889999999999999999998888876644
No 132
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.43 E-value=0.012 Score=52.35 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=73.4
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH
Q 008827 220 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR 299 (552)
Q Consensus 220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~ 299 (552)
+|.+|.+++.+++.++..-+..- ...+|.+...|+++++.||+.|..+|..|... +... ....++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee----ehhhhhHHHHH
Confidence 36789999999999987444332 24689999999999999999999999999765 2222 12233377888
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcC
Q 008827 300 LLDDTSTAVQVAALGAISNIVVD 322 (552)
Q Consensus 300 lL~~~~~~v~~~a~~aL~nl~~~ 322 (552)
.+.|++++++..|...+..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999998864
No 133
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.41 E-value=0.022 Score=58.33 Aligned_cols=239 Identities=17% Similarity=0.166 Sum_probs=151.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCCchhHHHHHhh
Q 008827 259 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVVDFTTRRSTFIRL 333 (552)
Q Consensus 259 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~~~~ 333 (552)
...++.+...|.+||.|+-...+..|+. +.+.|+.+.++..|+.. ++++.......|.-++......+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~-~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQI-FVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHH-HHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3567899999999999998887777766 89999999999999754 78899999988887777666666666554
Q ss_pred -CcHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--------
Q 008827 334 -GGVKLLVQLSKS-----------------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-------- 387 (552)
Q Consensus 334 -g~i~~L~~ll~~-----------------~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~-------- 387 (552)
+++..+...+.. .+...-..++..+.|+......... -.....++.++.++.
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~--~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP--EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc--hhhhHHHHHHHHHHHHHhccCCC
Confidence 677776665421 1233455688888888764332111 012222333333321
Q ss_pred -CCChhHHHHHHHHHHHhhcCCcch-------HHHHHhhcC--chHHHHHHHhc----ccC---chhHHHHHHHHHHhhc
Q 008827 388 -DPEPSVQEQALALVRNLVDGRINS-------VEYIFAEDG--IILDAVGRQLR----IAS---KAEIEIQGMYVLGNVA 450 (552)
Q Consensus 388 -~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~~~--~~~~~l~~~L~----~~~---~~~v~~~a~~~L~~la 450 (552)
.+.......++.+|.|+-....+. ...+...+. .++..++.+|. ... -.+.....+.+|.+++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 123456777777777774221111 000000110 13444444443 222 1245666788888888
Q ss_pred CCChhhHHHHHHHhhHh---------hhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 451 TGKESHKEAVMDQLLLR---------AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 451 ~~~~~~~~~i~~~~~~~---------~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
......|+.+-..++|- +...+-..|++++.+..+.+|..++..+-.++.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 76665566555544442 334567789999999999999999999988884
No 134
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.014 Score=57.83 Aligned_cols=268 Identities=17% Similarity=0.139 Sum_probs=140.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRST 329 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 329 (552)
+..+..-..+++..+|..|+..|.+.+...+.-.+. .....+..++. +..+.+.+|+.++..+|..+...-....-.
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~t--h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRT--HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHH--hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 334444445788899999999999998764433332 12233444444 445567899999999998776422211100
Q ss_pred HHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH--hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 330 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 330 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
..--++.-.+..+..+.+++.|.++...++.++.......++...+ .+....++-.+.++++.+-..+=..++.+.-+
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~ 417 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPN 417 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCch
Confidence 1111344556677889999999999988887765333334443332 12334455556778877765444444333211
Q ss_pred CcchHHHHHhhcCchHHHHHHHhcccCchhHHHH-HHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChh
Q 008827 408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ-GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR 486 (552)
Q Consensus 408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~-a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~ 486 (552)
- ..++ ....+-+.++. .-+..+.. .-|++ .+....++ +-.+ ......-++++..+.
T Consensus 418 l------~rke---~~~~~q~~ld~-~~~~~q~Fyn~~c~-~L~~i~~d-~l~~-----------~~t~~~~~f~sswe~ 474 (533)
T KOG2032|consen 418 L------VRKE---LYHLFQESLDT-DMARFQAFYNQWCI-QLNHIHPD-ILML-----------LLTEDQHIFSSSWEQ 474 (533)
T ss_pred h------HHHH---HHHHHhhhhHH-hHHHHHHHHHHHHH-HHhhhCHH-HHHH-----------HHHhchhheecchHH
Confidence 0 0000 11111111110 00000000 00111 11111111 1011 112223345556667
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 487 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 487 ~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
+|..+...-.++.- .-+++.....-..-....|..+.+|+.+++++.+..|+..+..
T Consensus 475 vr~aavl~t~~~vd---~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 475 VREAAVLKTTRSVD---SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHH---HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 77777766666652 2233333333333345677788899999999999999988764
No 135
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.32 E-value=0.02 Score=50.85 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827 305 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 384 (552)
Q Consensus 305 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 384 (552)
+|.+|..++.+++-++..++..- ...++.+...|.++++.+|..|+..|.+|....--..+ ...+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-----~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-----GQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-----hhhhHHHHH
Confidence 57899999999999988776533 35688999999999999999999999999763221112 223467778
Q ss_pred hhcCCChhHHHHHHHHHHHhhcC
Q 008827 385 LICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 385 ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
++.+++++|+..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999866
No 136
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.28 E-value=0.1 Score=53.61 Aligned_cols=267 Identities=16% Similarity=0.132 Sum_probs=158.4
Q ss_pred HHHHHHhhcccccccchhhhccCcHHHHHHhh----------cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHH
Q 008827 270 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----------DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLL 339 (552)
Q Consensus 270 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----------~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L 339 (552)
+.+|+.++|.... ... +.....+..|.++- ..+++.+..+|..+|+|+....+..++.+.+.|..+.+
T Consensus 2 L~~LRiLsRd~~~-~~~-l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTG-LDP-LFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCccc-chh-hccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 4567788887433 333 56666777777765 24588999999999999999999999999999999999
Q ss_pred HHhhcCC-----CHHHHHHHHHHHHHhcccCChHhHHHHHHh-hcHHHHHhhhc----C-------------CChhHHHH
Q 008827 340 VQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIFME-LTASLLASLIC----D-------------PEPSVQEQ 396 (552)
Q Consensus 340 ~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~-~~~~~l~~ll~----~-------------~~~~v~~~ 396 (552)
++.++.. +.++.....+.|.-++. ..++.+..+.+. ++...+...+. . .+......
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa-~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTA-LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhc-CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 9999876 67788878887776655 345667676655 55555555441 1 13445667
Q ss_pred HHHHHHHhhcCCcchHHHHHhhc-CchHHHHHHHh----cccCchhHHHHHHHHHHhhcCCChhh-------HHHHHHHh
Q 008827 397 ALALVRNLVDGRINSVEYIFAED-GIILDAVGRQL----RIASKAEIEIQGMYVLGNVATGKESH-------KEAVMDQL 464 (552)
Q Consensus 397 a~~~L~~l~~~~~~~~~~i~~~~-~~~~~~l~~~L----~~~~~~~v~~~a~~~L~~la~~~~~~-------~~~i~~~~ 464 (552)
++.++-|+....+.....-+... ..++..+..++ ...+......++..+|.|+--.+... ...+..
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~-- 236 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP-- 236 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC--
Confidence 88888888766544322111110 00333333331 11133467778888888874221110 000000
Q ss_pred hHhhhhhhHHHHHHhhcC----C-C---hhHHHHHHHHHHhhcCCCCCCCHHHHHHHHH----------------CCcHH
Q 008827 465 LLRAENKAQSCIIKFLQS----N-D---SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD----------------AGIVS 520 (552)
Q Consensus 465 ~~~~~~~~v~~Lv~lL~~----~-~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~----------------~g~~~ 520 (552)
...+..++..|+.+|.. . + .+.-.--..+|.+++.. ....++.+.. ...-.
T Consensus 237 -~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~----~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~ 311 (446)
T PF10165_consen 237 -EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA----AREVRKYLRARLLPPDKDRKKPPEKGDTLRS 311 (446)
T ss_pred -CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh----cHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence 00113344555555542 1 1 12334455555666531 1222222222 23447
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 521 HVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 521 ~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
.|+++++++.+++|+.+..-|..+.+
T Consensus 312 rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 312 RLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 88898888778999888877766543
No 137
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.28 E-value=0.1 Score=53.94 Aligned_cols=305 Identities=15% Similarity=0.142 Sum_probs=148.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827 81 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG 160 (552)
Q Consensus 81 ~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~ 160 (552)
.++...+++.+.+.-|..-+....++.|+.. ..++..++.|+.|++..||..|.+.|..++...+++
T Consensus 27 ~il~~~kg~~k~K~Laaq~I~kffk~FP~l~--------~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~----- 93 (556)
T PF05918_consen 27 EILDGVKGSPKEKRLAAQFIPKFFKHFPDLQ--------EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH----- 93 (556)
T ss_dssp HHHHGGGS-HHHHHHHHHHHHHHHCC-GGGH--------HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T------
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhH--------HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH-----
Confidence 4555566788888889999999888877775 457788999999999999999999999999875543
Q ss_pred hHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhc-CCCChhhHHHHHHHHHHhhc-C
Q 008827 161 IKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK-GSLHPRRFEGILLALADMCS-K 237 (552)
Q Consensus 161 ~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~~~~~~~a~~aL~~l~~-~ 237 (552)
...+...|+++|. +++.....+-.+|..+...++. +.+..+++.+.. ...+..+|+.++..|..=.. -
T Consensus 94 -v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 94 -VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred -HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence 2468889999999 4433344445566666544443 335555555541 11236688888877753222 1
Q ss_pred ChhHHH--HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh------cCCCHHHH
Q 008827 238 LECCRS--RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL------DDTSTAVQ 309 (552)
Q Consensus 238 ~~~~~~--~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL------~~~~~~v~ 309 (552)
..+.-. .-.+.-++..+-..|.+-..+=-.....+|..+..- ...... -.....++.+.... ...|++..
T Consensus 165 ~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~-~~~~t~-~g~qeLv~ii~eQa~Ld~~f~~sD~e~I 242 (556)
T PF05918_consen 165 KPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIY-GGKQTI-EGRQELVDIIEEQADLDQPFDPSDPESI 242 (556)
T ss_dssp -TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG----GSSH-HHHHHHHHHHHHHHTTTS---SSSHHHH
T ss_pred cHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccc-cccCCh-HHHHHHHHHHHHHhccCCCCCCcCHHHH
Confidence 111111 222334566666777652221111122333333220 000000 00111223333222 12355555
Q ss_pred HHHHHHHHH----hhcCCchhH-HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827 310 VAALGAISN----IVVDFTTRR-STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 384 (552)
Q Consensus 310 ~~a~~aL~n----l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 384 (552)
..-..++.. +..+....+ -.++-..++|.+-.+ ++..+..-+.+++.++....+......+ ..+++.|..
T Consensus 243 drli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~L~~ 317 (556)
T PF05918_consen 243 DRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQLLKK 317 (556)
T ss_dssp HHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHHHHH
Confidence 444444433 222111111 011222344433333 5577888888888887654432233333 223344444
Q ss_pred hhcC--CCh----hHHHHHHHHHHHhhcCCcchHHH
Q 008827 385 LICD--PEP----SVQEQALALVRNLVDGRINSVEY 414 (552)
Q Consensus 385 ll~~--~~~----~v~~~a~~~L~~l~~~~~~~~~~ 414 (552)
.+-. ..+ ...+..+.++.+|+...|+....
T Consensus 318 ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~ 353 (556)
T PF05918_consen 318 YMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNF 353 (556)
T ss_dssp TS----------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred hCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence 4422 122 45567778888888776654433
No 138
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.22 Score=48.98 Aligned_cols=227 Identities=15% Similarity=0.191 Sum_probs=145.8
Q ss_pred HHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc---------cccchhhhccCcHHHH
Q 008827 227 ILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK---------NLSAGSFMNETIVIPL 297 (552)
Q Consensus 227 a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~---------~~~~~~~~~~~~i~~L 297 (552)
++.-+..++. -|+....+++.++++.++++|.|.|.++-.+.+..+..++...- .+-.. +++.++++.|
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLida-Lvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDA-LVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHH-HHhccHHHHH
Confidence 3444455554 56777888999999999999999999999999999999986421 11222 5788999999
Q ss_pred HHhhcCCCHHHH------HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHh
Q 008827 298 VRLLDDTSTAVQ------VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKC 369 (552)
Q Consensus 298 v~lL~~~~~~v~------~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~ 369 (552)
++-++.-|..+. ..+...+-|++.-.+.....+.+.|.+..|+.-+.. +-..-+..+...|.-+..+++ +.
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~-e~ 260 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD-EN 260 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc-hh
Confidence 988864333333 455566778876666666677778888887764443 334566777777777765443 35
Q ss_pred HHHHHHhhcHHHHHhhhc-----CC----ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc-hHHHHHHHhcccCchhHH
Q 008827 370 KEEIFMELTASLLASLIC-----DP----EPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAVGRQLRIASKAEIE 439 (552)
Q Consensus 370 ~~~i~~~~~~~~l~~ll~-----~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~-~~~~l~~~L~~~~~~~v~ 439 (552)
+...-.-.+++.+++-+. +| ..+..++....|..+... +......+.+.|. .+.++.+ .+..-+
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr-----~Kk~sr 334 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLR-----EKKVSR 334 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHH-----HHHHhh
Confidence 555556677888777652 21 234566666666655543 3344455554442 3344333 233446
Q ss_pred HHHHHHHHhhcCCCh--hhHHHHHH
Q 008827 440 IQGMYVLGNVATGKE--SHKEAVMD 462 (552)
Q Consensus 440 ~~a~~~L~~la~~~~--~~~~~i~~ 462 (552)
.+++.+|-....|.+ ..+...++
T Consensus 335 ~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred hhHHHHHHHHHhCCCchHHHHHHHH
Confidence 678888888877665 34444443
No 139
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.28 E-value=0.00075 Score=43.38 Aligned_cols=38 Identities=34% Similarity=0.446 Sum_probs=34.8
Q ss_pred hhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 325 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 325 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
+.+..+.+.|+++.|+++++++++.++..++|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35678889999999999999999999999999999986
No 140
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.25 E-value=0.064 Score=52.05 Aligned_cols=189 Identities=21% Similarity=0.205 Sum_probs=114.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh---hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC-hHhHH
Q 008827 296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR---LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE-DKCKE 371 (552)
Q Consensus 296 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~---~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~ 371 (552)
..+..+.+.....|+.|...+.++...... . .+++ .-.+..+.+.++.+..+-+.-|+.++.-++...+ .....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYL-P-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-H-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 344455567789999999999988754322 1 2222 2356777788887776666667777776655321 12334
Q ss_pred HHHHhhcHHHHHhhhcCCC--hhHHHHHHHHHHHh---hcCCcchHHHHHhhcCchHH--HHHHHhccc---------Cc
Q 008827 372 EIFMELTASLLASLICDPE--PSVQEQALALVRNL---VDGRINSVEYIFAEDGIILD--AVGRQLRIA---------SK 435 (552)
Q Consensus 372 ~i~~~~~~~~l~~ll~~~~--~~v~~~a~~~L~~l---~~~~~~~~~~i~~~~~~~~~--~l~~~L~~~---------~~ 435 (552)
.+++. ..+.|.+.+.+.+ +.++..++.+|+-+ +..+++.+...++ .++ +......+. ++
T Consensus 125 ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~----~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME----SLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH----HHHHHHHHHhcCcCCCcccccCCCc
Confidence 55543 5778888887654 34555655555544 4455555554334 334 222222221 23
Q ss_pred hhHHHHHHHHHHhhcCCChh-hHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 436 AEIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 436 ~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
+.+...|+.+-+-+.+.-+. ...... ...++.|+.+|.++|.+||.+|.-+|.-+-
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~--------~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLL--------EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45777776666666653332 222333 456799999999999999999998887553
No 141
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.25 E-value=0.041 Score=51.54 Aligned_cols=255 Identities=9% Similarity=0.045 Sum_probs=144.5
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCC--CCHHHHHHHHHHHHHhhcccccccchhh-hccCcHHH
Q 008827 221 PRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSF-MNETIVIP 296 (552)
Q Consensus 221 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~-~~~~~i~~ 296 (552)
+-.+.-|+.++.++.. .++.|..+. +...--.+++.++. +...+++.+.-+++.++.+.. ..+. + .....+..
T Consensus 163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqd-i~K~~dli~d 239 (432)
T COG5231 163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQD-IDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHH-HHHHHHHHHH
Confidence 4467778888888876 456666544 44455667777764 567899999999999988732 2221 1 11245666
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhhC-cHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhHH
Q 008827 297 LVRLLD-DTSTAVQVAALGAISNIVVDFT-TRRSTFIRLG-GVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKE 371 (552)
Q Consensus 297 Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~-~~~~~~~~~g-~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~ 371 (552)
|+++.+ +....+..-+++.+.|++...+ .....+.-.| +.+..--+++. ++++++...-..=..+.. .. .+.
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~-~~--k~l 316 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ-NT--KKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh-hh--hhh
Confidence 777776 3466788889999999987332 2222222234 44444344443 355554433222222211 10 111
Q ss_pred HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh-HHHHHHHHHHhhc
Q 008827 372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE-IEIQGMYVLGNVA 450 (552)
Q Consensus 372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~-v~~~a~~~L~~la 450 (552)
-.++.-.-+.--.++..+.+..... .| ..+++.+.+..-.++..|..++++ +++. ...-||.-++.+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~d-FW---------s~N~d~l~kdny~i~k~L~~~lq~-n~~nt~i~vAc~Di~~~V 385 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKD-FW---------STNLDMLIKDNYEIVKVLKKYLQS-NNPNTWICVACSDIFQLV 385 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccC-ch---------hhhHHHHhhhhHHHHHHHHHHHhc-CCCCceEeeeHhhHHHHH
Confidence 1111111111112222222211110 00 011222222211167777788887 5555 4556788888888
Q ss_pred CCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 451 TGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 451 ~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
...|..+..+.. .|+-..++.++.++|+++|.+|..++..+.
T Consensus 386 r~~PE~~~vl~K-------yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 386 RASPEINAVLSK-------YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhCchHHHHHHH-------hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 777765554443 788899999999999999999999988776
No 142
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.06 Score=56.05 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=103.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCCcchHH
Q 008827 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVE 413 (552)
Q Consensus 335 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 413 (552)
+=+.+-+++.+.++-+|...+.++.---.+.. ..+.+..|+.. ..+.+.+|+..|..+|+-++..+|+.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg--------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG--------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC--------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 33444467777788888887766642211111 12345566665 67889999999999999999998863
Q ss_pred HHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHH
Q 008827 414 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW 493 (552)
Q Consensus 414 ~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~ 493 (552)
.+-.+++|..+-|+.||..++.+|+-.++|.- .+. .+..|-.+..++..-||..|+.
T Consensus 590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e-------------Ai~lLepl~~D~~~fVRQgAlI 646 (929)
T KOG2062|consen 590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKE-------------AINLLEPLTSDPVDFVRQGALI 646 (929)
T ss_pred ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH-------------HHHHHhhhhcChHHHHHHHHHH
Confidence 44455666666899999999999997777653 222 2234555666777789999998
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHH
Q 008827 494 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK 534 (552)
Q Consensus 494 ~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~ 534 (552)
++..+..-..+..-.+. .|+.+.+.+.+.|.+++.-
T Consensus 647 a~amIm~Q~t~~~~pkv-----~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 647 ALAMIMIQQTEQLCPKV-----NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred HHHHHHHhcccccCchH-----HHHHHHHHHHhhhhhhHHH
Confidence 88877642111111111 2334566666665555533
No 143
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.21 E-value=0.0019 Score=50.45 Aligned_cols=90 Identities=23% Similarity=0.263 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhh--hccCcHHHHHHhh
Q 008827 224 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF--MNETIVIPLVRLL 301 (552)
Q Consensus 224 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~--~~~~~i~~Lv~lL 301 (552)
|..++.+|+..+..-... -.-.-..++|+++..+.+++++||+.||.+|.++++.... . + .-..+.+.|.+++
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~---~-~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG---E-ILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHH
Confidence 455666666665422211 1111124799999999999999999999999999876322 2 2 2356778888889
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 008827 302 DDTSTAVQVAALGAISNI 319 (552)
Q Consensus 302 ~~~~~~v~~~a~~aL~nl 319 (552)
.|+++.|+..| ..|-++
T Consensus 78 ~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRL 94 (97)
T ss_pred cCCchhHHHHH-HHHHHH
Confidence 99999998777 444343
No 144
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.17 E-value=0.0011 Score=42.67 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=35.4
Q ss_pred hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827 240 CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 278 (552)
Q Consensus 240 ~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~ 278 (552)
+.+..+.+.|++|.+++++++++++++..++++|++++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467778899999999999999999999999999999863
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.16 E-value=0.0088 Score=50.74 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=98.4
Q ss_pred hhccCcHHHHHHhhcCCC------HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHH
Q 008827 288 FMNETIVIPLVRLLDDTS------TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALR 359 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~------~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~ 359 (552)
|...++++.|+++++++. .++...+..++.+|.... .......+...+..++.+.... +..+...|+..|-
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 788899999999998654 488899999999998753 3334566667788888887653 5789999999999
Q ss_pred HhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
+++.+ ++.....+.++-.++.|+..|..+++++|.+++.++..+....++
T Consensus 86 s~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 86 SIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99874 456677777888899999999999999999999999888766544
No 146
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.14 E-value=0.051 Score=50.91 Aligned_cols=223 Identities=14% Similarity=0.056 Sum_probs=135.5
Q ss_pred hhchHHHHHHHhhcCCHHHHHHH-HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh-cccHHHHHH
Q 008827 179 VGDEASFAFSSLIAEKEDMQKLA-FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVD 256 (552)
Q Consensus 179 v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~lv~ 256 (552)
.+..|..++.++....+. +... .+..+-..+++++++.--+..++-+.+..++-++. ++.+.+.+-+ ...+.-+++
T Consensus 165 Trlfav~cl~~l~~~~e~-R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~ 242 (432)
T COG5231 165 TRLFAVSCLSNLEFDVEK-RKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIA 242 (432)
T ss_pred HHHHHHHHHhhhhhhHHH-HHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 455667777777654433 3322 23344567888777653335577788888888875 4555433332 245666677
Q ss_pred hcCCC-CHHHHHHHHHHHHHhhccc-ccccchhhhccCcHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCch------
Q 008827 257 ALAHD-SSDVRSAACMCLRSVSRSI-KNLSAGSFMNETIVIPLVRLLD---DTSTAVQVAALGAISNIVVDFTT------ 325 (552)
Q Consensus 257 ~L~~~-~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~------ 325 (552)
+.+.. ...|-+-.|..+.++.... ...-.. +.-.|-+.+.++.|. -+|++++...-..=..+..+...
T Consensus 243 iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~-~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 243 IVKERAKEKVLRLCCGIVANVLDKSPKGYIFS-PLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhh-hHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 77643 4566677788888886632 111111 233344556667664 24666554332222222111100
Q ss_pred ------------------------hHHHHHhh--CcHHHHHHhhcCCCHH-HHHHHHHHHHHhcccCChHhHHHHHHhhc
Q 008827 326 ------------------------RRSTFIRL--GGVKLLVQLSKSMDST-IRLNALRALRNLIFLAEDKCKEEIFMELT 378 (552)
Q Consensus 326 ------------------------~~~~~~~~--g~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~~~~~~~i~~~~~ 378 (552)
+...+.+. ..+..|.+++++.++. .-..|+.-+..+.+ ..|+.+..+...|+
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr-~~PE~~~vl~Kyg~ 400 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR-ASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH-hCchHHHHHHHhhh
Confidence 11122222 3778888999887665 33446666666666 45788889999999
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 379 ASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 379 ~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
-+.+..+++++|++|+-.|+.++..+.
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999998876553
No 147
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.57 Score=50.84 Aligned_cols=281 Identities=13% Similarity=0.101 Sum_probs=149.5
Q ss_pred CcHHHHHHhhh------cCCCChhhHHHHHHHHHHhhcC--ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827 205 NGVDKLYNHLQ------KGSLHPRRFEGILLALADMCSK--LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 205 ~~i~~L~~~L~------~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l 276 (552)
+.++.++++|. .+..++..++.|++++++++.. .+..-+...+.=+++++...++++.--+|..||+.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 34555566666 3334567788999999998851 112223334445677888888888889999999999999
Q ss_pred hcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHh--hCcHHHHHHhhcCCCHHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLN 353 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~ 353 (552)
+.-. .... -.-..+++...+.|. +.+-.|+..|+-||..+..+.....+++.. -+.++.|+.+.+..+-+.-.+
T Consensus 490 ~~~d--f~d~-~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 490 SSID--FKDP-NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred Hhcc--CCCh-HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 8421 1111 122344555566665 778899999999999998776654444432 245556666665543333333
Q ss_pred HHH-HHHHhcccCChHhHHHHHHhhcHHHHHhhhcC---C---ChhHHHHHHHHHHHhhcCC--cchHHHHHhh-cCchH
Q 008827 354 ALR-ALRNLIFLAEDKCKEEIFMELTASLLASLICD---P---EPSVQEQALALVRNLVDGR--INSVEYIFAE-DGIIL 423 (552)
Q Consensus 354 a~~-aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~---~---~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~-~~~~~ 423 (552)
.+. .++.+...-.| ....+. ........+++.+ . +.+=+..|+++|+.+..-- -+....++.+ ..+++
T Consensus 567 vme~iV~~fseElsP-fA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l 644 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSP-FAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL 644 (1010)
T ss_pred HHHHHHHHHHHhhch-hHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 332 22333322221 111111 1233445555542 2 2233445556665554210 0001112221 11245
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 424 DAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 424 ~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
+.+-..|++ .-.++-+.++....+++.-.+. ....+ =++.+.+.+.+++...+.-....-++.|+..
T Consensus 645 ~vi~~iL~~-~i~dfyeE~~ei~~~~t~~~~~-Isp~m--------W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 645 PVIGFILKN-DITDFYEELLEIVSSLTFLSKE-ISPIM--------WGLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHhhhhhhhcc-cCHHH--------HHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 555555665 4556666676666666543221 11111 1444555555555555555555666666553
No 148
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.10 E-value=0.0032 Score=49.22 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=58.2
Q ss_pred hchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh
Q 008827 180 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS 247 (552)
Q Consensus 180 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 247 (552)
+.....++++++..++.++..+.+.||+|.+++...-.+..|-+++.|++++.+|+.++++++..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44567889999999999999999999999999876555467899999999999999999988776654
No 149
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.58 Score=50.24 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=112.6
Q ss_pred HhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHH
Q 008827 130 VKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD 208 (552)
Q Consensus 130 l~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 208 (552)
+.+.+...|..|.+-+..-...+.. + .-..|-.++... ++.+++.-.=..+.+.+...|+..... +.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------m-ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLa-----vN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------M-SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLA-----VN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------h-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHH-----HH
Confidence 4556666666666544433322211 1 224444555444 445666666566666676666543322 33
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhh
Q 008827 209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 288 (552)
Q Consensus 209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~ 288 (552)
.+.+=++++ ++.+|..|+++++.+-. ++... .+++.+.++++++++.||+.|+-|+..+=+-.+.. +
T Consensus 96 ti~kDl~d~--N~~iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l----~ 162 (757)
T COG5096 96 TIQKDLQDP--NEEIRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL----Y 162 (757)
T ss_pred HHHhhccCC--CHHHHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh----h
Confidence 455545655 48899999999888742 23322 36899999999999999999999999986543332 4
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 322 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 322 (552)
.+.|.+..+..++.+++|.+..+|..+|..+-..
T Consensus 163 ~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 163 HELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 5678888899999999999999999999887644
No 150
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.8 Score=50.79 Aligned_cols=223 Identities=16% Similarity=0.176 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS 380 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~ 380 (552)
+.++.+|..+...|..++.. ++......+ ..+...+..-.++.+...+...+.+|..+....+.+ ....+...+.+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e-~~~~i~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAE-HCDLIPKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHH
Confidence 45889999999999999875 332211111 123444555566667777888888887776544422 22333344455
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhc--C-----CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827 381 LLASLICDPEPSVQEQALALVRNLVD--G-----RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 453 (552)
Q Consensus 381 ~l~~ll~~~~~~v~~~a~~~L~~l~~--~-----~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~ 453 (552)
.++.+ ++.+..-+..+..+|..++. . +.. ....+++ .+..+...+-+ ....+....+.++..+....
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lne---fl~~Isagl~g-d~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNE---FLSIISAGLVG-DSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHH---HHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHH
Confidence 55555 88888999999988888872 1 111 1222222 23333333222 12222222244444443321
Q ss_pred hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccH
Q 008827 454 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV 533 (552)
Q Consensus 454 ~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v 533 (552)
........ -.+++..+..+|.+++++++..|+..+..++. ..++-...-.....++.+..++++....+
T Consensus 817 ~~~ld~~~-------l~~li~~V~~~L~s~sreI~kaAI~fikvlv~----~~pe~~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 817 KNILDDET-------LEKLISMVCLYLASNSREIAKAAIGFIKVLVY----KFPEECLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred hccccHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----cCCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence 11111111 14566677888999999999999999999986 22222222223345677777777666666
Q ss_pred HHHHHHHHHHH
Q 008827 534 KLRVKTALEQF 544 (552)
Q Consensus 534 ~~~a~~al~~~ 544 (552)
+.++.--|+.+
T Consensus 886 r~Kvr~LlekL 896 (1176)
T KOG1248|consen 886 RKKVRLLLEKL 896 (1176)
T ss_pred HHHHHHHHHHH
Confidence 66665555443
No 151
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.73 Score=50.08 Aligned_cols=436 Identities=12% Similarity=0.122 Sum_probs=222.0
Q ss_pred cHHHHHHHHHHHHHHHcCC-----CCCCcccccccchHHHHHhhc--CCCCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827 7 YMEVVDAGARSLKMIYQSK-----MAPKYDFLQEENMEFLLSLLN--NESENVSGLGASIISHSCKTSLEQKLLFDAGVL 79 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~ll~--~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i 79 (552)
.-++++.++..+.--...| +.. .+..+.+--+.+-+-.. .+..+=..++...+..+++. ..+..+ .|.+
T Consensus 337 twkll~PHl~~ii~~vIFPlmc~~d~d-eelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K-R~ke~l--~k~l 412 (1010)
T KOG1991|consen 337 TWKLLKPHLQVIIQDVIFPLMCFNDED-EELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK-RGKETL--PKIL 412 (1010)
T ss_pred HHHHhhhHHHHHHHHhhhhhcCCCccc-HHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh-cchhhh--hhHH
Confidence 3456666666665443333 233 33344343333333222 11122234555666666532 222222 4667
Q ss_pred HHHHHhhcC---------CHHHHHHHHHHHHHHhcC---ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHH
Q 008827 80 KRLTSLLGG---------SLIQRDASLESIATIFKN---NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIV 147 (552)
Q Consensus 80 ~~L~~lL~~---------~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~ 147 (552)
+.+++.|++ +++-+.-|+.+++.++.- ...+...+- .=.+..++..++++.--.|..|++.+..
T Consensus 413 ~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE----~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 413 SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQME----YFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHH----HHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 888888872 245677899999998721 111111110 1123445668899999999999999999
Q ss_pred HhhhCCCcchhhhhHHhHHHHHHHhcCCC--CchhchHHHHHHHhhcCCHHHHHHHH--HhCcHHHHHHhhhcCCCChhh
Q 008827 148 IRNASPCYLQDVGIKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQKLAF--EVNGVDKLYNHLQKGSLHPRR 223 (552)
Q Consensus 148 l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~~L~~~~~~~~~ 223 (552)
++... ..+...-..+++.-.+.|.++ -+|+.+|+.+|..+.++.+.....+. -.+.++.|+++.+... -+.
T Consensus 489 ~~~~d---f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E--nd~ 563 (1010)
T KOG1991|consen 489 FSSID---FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE--NDD 563 (1010)
T ss_pred HHhcc---CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc--hhH
Confidence 88643 234444556777777777733 47899999999999887765422221 2344556666444332 111
Q ss_pred HHHHHHHHHHhhcCChhHHHHHH--hcccHHHHHHhcCC------CCHHHHHHHHHHHHHhhc---ccccccch-hhhcc
Q 008827 224 FEGILLALADMCSKLECCRSRCL--SLQVLKLVVDALAH------DSSDVRSAACMCLRSVSR---SIKNLSAG-SFMNE 291 (552)
Q Consensus 224 ~~~a~~aL~~l~~~~~~~~~~~~--~~~~l~~lv~~L~~------~~~~v~~~a~~~L~~ls~---~~~~~~~~-~~~~~ 291 (552)
....+..+- +...++...-.. -..+...+.+.+.. .+.+-..+|.++|+.++. +.++.... +-.+.
T Consensus 564 Lt~vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~ 641 (1010)
T KOG1991|consen 564 LTNVMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEP 641 (1010)
T ss_pred HHHHHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 122221111 111222211111 12345556666653 123444566666665532 11111111 01234
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH-hH
Q 008827 292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK-CK 370 (552)
Q Consensus 292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~ 370 (552)
-++|.+-.+|++.-.++-+.+...+.+++.-....... --|..+.+.+.........-....-+|.|+.....+. .+
T Consensus 642 ~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~--mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s 719 (1010)
T KOG1991|consen 642 IVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPI--MWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLS 719 (1010)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhc
Confidence 44555555677777788888888887776543221111 1367777888888777777778888888876543332 22
Q ss_pred HHHHHhhcHHHHHhhhcCC--ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh-cccCchhHHHHHHHHHH
Q 008827 371 EEIFMELTASLLASLICDP--EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL-RIASKAEIEIQGMYVLG 447 (552)
Q Consensus 371 ~~i~~~~~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L-~~~~~~~v~~~a~~~L~ 447 (552)
....-...++.+...+.+. ...-...|+.++..+..+..+.++..+.. .++.....+ ....+...+..++.+..
T Consensus 720 ~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl---f~~~a~~~l~~~~e~s~~~~~~leVvi 796 (1010)
T KOG1991|consen 720 NPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL---FLELALSRLTREVETSELRVMLLEVVI 796 (1010)
T ss_pred cchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH---HHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2222223344555566552 23344456666666553332222222111 111211112 21134455555665555
Q ss_pred hhcCCChhhHHHHHH
Q 008827 448 NVATGKESHKEAVMD 462 (552)
Q Consensus 448 ~la~~~~~~~~~i~~ 462 (552)
|.---+|...-.+++
T Consensus 797 nalyynP~ltL~iLe 811 (1010)
T KOG1991|consen 797 NALYYNPKLTLGILE 811 (1010)
T ss_pred HHHHcCcHHHHHHHH
Confidence 444444544444444
No 152
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.93 E-value=0.0048 Score=48.22 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHh
Q 008827 93 RDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL 172 (552)
Q Consensus 93 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~l 172 (552)
|..++.+|..++..-+....... ...+++++..+.|++++||..|..+|+++++.......+ .-..+.+.|.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l----~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl 76 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL----DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKL 76 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 45566677666544322222222 567889999999999999999999999999864332111 224577777887
Q ss_pred cCCC-CchhchHHHHHHHhh
Q 008827 173 LDDP-GRVGDEASFAFSSLI 191 (552)
Q Consensus 173 l~~~-~~v~~~a~~~L~~l~ 191 (552)
+.+. +.|+ .++..|-++.
T Consensus 77 ~~D~d~~Vr-~~a~~Ld~ll 95 (97)
T PF12755_consen 77 SADPDENVR-SAAELLDRLL 95 (97)
T ss_pred HcCCchhHH-HHHHHHHHHh
Confidence 7754 4555 4445555543
No 153
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.1 Score=55.07 Aligned_cols=241 Identities=17% Similarity=0.190 Sum_probs=156.4
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHH-HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHH-HHHHHHHHHHHhcccC
Q 008827 288 FMNETIVIPLVRLLDDTSTAVQVAALGAIS-NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST-IRLNALRALRNLIFLA 365 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~-nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~ 365 (552)
.+..|+...|+.+.....++.+..+..+|. .+. ++..+ ....++.+...++..... -...++.++.|++..+
T Consensus 500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s 573 (748)
T KOG4151|consen 500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASIS 573 (748)
T ss_pred cccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcc
Confidence 678899999999998777788888888887 222 22221 124566666666554322 2345888999998744
Q ss_pred ChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHH
Q 008827 366 EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 445 (552)
Q Consensus 366 ~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~ 445 (552)
...|.++..+.+.+-+-.++...++..|..++..+.||.-+.- .++..+-+...=.+.....+.. ........++.+
T Consensus 574 -~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~-~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a 650 (748)
T KOG4151|consen 574 -ESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL-LYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGA 650 (748)
T ss_pred -hhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH-HHHHHhhccccCchHHHHHHHh-hhhHHhhhcccc
Confidence 3567778888888888888999999999999999999986632 2222222211012222222333 445566677777
Q ss_pred HHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh
Q 008827 446 LGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM 525 (552)
Q Consensus 446 L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l 525 (552)
+..+++..+.++..+.+ .......++.++.+.+..+++.....+.|+.. ...+....+.+....+.+..+
T Consensus 651 ~a~I~sv~~n~c~~~~~------~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~----~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 651 LAAITSVVENHCSRILE------LLEWLEILVRAIQDEDDEIQHRGLVIILNLFE----ALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred ccchhhcchhhhhhHHH------hhcchHHHHHhhcCchhhhhhhhhhhhhhHHH----HHHHHHHHhccchHHHHHHHH
Confidence 77677655555554332 13445788999999999999999999999653 556667777777766666665
Q ss_pred hcCCCccHHHHHHHHHHHHhhh
Q 008827 526 VNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 526 l~~~~~~v~~~a~~al~~~~~~ 547 (552)
-.-.-.-.++.+..+|.-+.++
T Consensus 721 ~~~~~a~~~~~~~~~l~~a~~~ 742 (748)
T KOG4151|consen 721 QKLNRAPKREDAAPCLSAAEEY 742 (748)
T ss_pred HHhhhhhhhhhhhhHHHHHHHh
Confidence 3222234555666666554443
No 154
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.64 E-value=0.49 Score=45.96 Aligned_cols=195 Identities=18% Similarity=0.164 Sum_probs=113.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH---hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC--Ccch
Q 008827 337 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM---ELTASLLASLICDPEPSVQEQALALVRNLVDG--RINS 411 (552)
Q Consensus 337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~---~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 411 (552)
...+..+.......|+.++..+.++....- ....++ .-.++.+.+.++.+..+-+.-|+.++.-++.. ..+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~---~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRY---LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 344455555668889999998888764321 112221 23567778888877777777777777777644 2334
Q ss_pred HHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhc---CCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-----
Q 008827 412 VEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVA---TGKESHKEAVMDQLLLRAENKAQSCIIKFLQS----- 482 (552)
Q Consensus 412 ~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la---~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~----- 482 (552)
...+++. +.+.|.+.+... ..+.++..++.+|+-++ .+.+......++. .+.+ .....+++
T Consensus 123 ~~ei~~~---~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~------le~i-f~~~~~~~~~~~~ 192 (309)
T PF05004_consen 123 SEEIFEE---LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMES------LESI-FLLSILKSDGNAP 192 (309)
T ss_pred HHHHHHH---HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHH------HHHH-HHHHhcCcCCCcc
Confidence 5566665 578888888763 23456666665555443 3333333322210 1100 11122222
Q ss_pred -----CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827 483 -----NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 483 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~ 548 (552)
+++.+..+|..+-+-|... -........ -...++.|..+|++++.+||-.|..+|.-+.+.+
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~---~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTT---LPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhc---CCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1345676666555555431 111122222 2345899999999999999999999999887764
No 155
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.62 E-value=0.011 Score=46.13 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh--cCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827 350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPSVQEQALALVRNLVDGRINSVEYI 415 (552)
Q Consensus 350 v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 415 (552)
.|...+..++|+++ ..+..+..+.+.++++.++..- ++.+|.+++.|+++++|++.++++..+.+
T Consensus 2 ~K~~lvrlianl~~-~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCY-KNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHh-CCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35677889999997 4578999999999999999865 46789999999999999999988655444
No 156
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.57 E-value=0.048 Score=58.16 Aligned_cols=190 Identities=19% Similarity=0.235 Sum_probs=134.1
Q ss_pred HHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHH--------HH----HHhCcHHHHHHhhhcCCCChhhHHHHHHHHH
Q 008827 165 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK--------LA----FEVNGVDKLYNHLQKGSLHPRRFEGILLALA 232 (552)
Q Consensus 165 ~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~--------~~----~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~ 232 (552)
+...|+.+|+. +.+...++.+++-+.+|.+...+ .. +=+..+|.|++.+... +...+..-+.+|.
T Consensus 816 ia~klld~Ls~-~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~--~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSG-PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA--PGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCC-ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC--CccchhHHHHHHH
Confidence 45556666653 45666777888877777665432 12 2246678899877743 3567888899999
Q ss_pred HhhcCChhHHHHHHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC---HH
Q 008827 233 DMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS---TA 307 (552)
Q Consensus 233 ~l~~~~~~~~~~~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~ 307 (552)
++-.+-|. ..+.. ...+|.+++.|.-++..+|..+..++.-+....+.+... .-..++|.++.+=.+.+ ..
T Consensus 893 hVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~--~~~Tlvp~lLsls~~~~n~~~~ 968 (1030)
T KOG1967|consen 893 HVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE--HLSTLVPYLLSLSSDNDNNMMV 968 (1030)
T ss_pred HHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH--HHhHHHHHHHhcCCCCCcchhH
Confidence 88765443 22222 248999999999999999999999998886654555443 34567888887776654 68
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827 308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361 (552)
Q Consensus 308 v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 361 (552)
+|+.|..+|..++...+...-.-....++..|...|.++...+|..|+.+=.++
T Consensus 969 VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 969 VREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 999999999999874443332334456788888999888888999988765554
No 157
>PRK14707 hypothetical protein; Provisional
Probab=96.57 E-value=2.5 Score=50.00 Aligned_cols=461 Identities=13% Similarity=0.032 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcC-CCCcchHHHHHHHHh-hcCChhhHHHHHhcCchHHHHHhhcC-
Q 008827 12 DAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNN-ESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGG- 88 (552)
Q Consensus 12 ~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~~~~~a~~~l~~-~~~~~~~~~~l~~~g~i~~L~~lL~~- 88 (552)
+.++..|-.....++.. ..-++..+|..++--++. ++...++.++..|.. ++....-+..+ +...+...+..|..
T Consensus 182 ~~aa~~la~~~~~~d~~-~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKw 259 (2710)
T PRK14707 182 QAVAPRFAALVASDDRL-RSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKW 259 (2710)
T ss_pred HHHHHHHHHHhcCChhh-hcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcC
Confidence 34444444444344333 233466677776666653 444455555555554 55443323222 22234444444443
Q ss_pred -CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHH
Q 008827 89 -SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLI 166 (552)
Q Consensus 89 -~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i 166 (552)
+..+-.++..++..=..+++...+.+. ...+...+. +.+..+..+=..|+..|..-.-+.+. ....+-..++-
T Consensus 260 p~~~~C~~a~~~lA~rl~~~~~l~~al~----~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~-l~~~~~~~~~~ 334 (2710)
T PRK14707 260 ADTPVCAAAASALAERLVDDPGLRKALD----PINVTQALNALSKWADLPVCAEAAIALAERLADDPE-LCKALNARGLS 334 (2710)
T ss_pred CCchHHHHHHHHHHHHHhhhHHHHHhcC----HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHh-hhhccchHHHH
Confidence 334445555555432223344433331 223333333 55566666655555554442222221 11111122333
Q ss_pred HHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHH
Q 008827 167 NNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRC 245 (552)
Q Consensus 167 ~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~ 245 (552)
..|..+-+ -+..+...|+.+|..=..+++..++ -.+..++...++.|..=+ +......+..+|+.=..++.+.++.+
T Consensus 335 ~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~ 412 (2710)
T PRK14707 335 TALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGL 412 (2710)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhc
Confidence 33444444 2345677888887755556665533 445666777777665442 34455666666665555677887777
Q ss_pred HhcccHHHHHHhcCCCCHHHHHHHHHHHHH-hhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 008827 246 LSLQVLKLVVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 246 ~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~ 323 (552)
-..|+-..|-.+-+=++..++..++..|.. ++.. ..++.. +--.+ +-..+..++ =+|..+-..|+..|..-....
T Consensus 413 ~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d-~~l~~~-~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~ 489 (2710)
T PRK14707 413 DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHD-TELCKA-LDPIN-VTQALDALSKWPDTPICGQTASALAARLAHE 489 (2710)
T ss_pred chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc-HHHHhh-cChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhccc
Confidence 665655555555556777787777776664 4444 556654 33223 333444443 356666667777776544444
Q ss_pred chhHHHHHhhCcHHHHHHhhcCCCHHHHH-HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHH
Q 008827 324 TTRRSTFIRLGGVKLLVQLSKSMDSTIRL-NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVR 402 (552)
Q Consensus 324 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~ 402 (552)
...++.+--.++...|-.+.+-++..... .+.|.-..+.. +......+-.......+-.+-++++...-+.+...|.
T Consensus 490 ~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA 567 (2710)
T PRK14707 490 RRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD--ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLA 567 (2710)
T ss_pred HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 44555555556666676777766644333 33344444432 1112222222233334444556677666666666666
Q ss_pred HhhcCCcchHHHHHhhcCchHHHHHHHhcccCch-hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827 403 NLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 481 (552)
Q Consensus 403 ~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~-~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~ 481 (552)
.+....+. ...-+... =+..+...|+.-++. ..+..+.++-+.+.. .+..+..+-. .++...+-.+-+
T Consensus 568 ~~l~~~~~-~~~~L~aq--~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~~-------q~lan~lNALSK 636 (2710)
T PRK14707 568 ERLADEPQ-LPKDLHRQ--GVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELDP-------VDVTNVLNALSK 636 (2710)
T ss_pred HHhhcchh-hHHhhhhh--HHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-ChhhhhhccH-------HHHHHHHhhhhc
Confidence 65443322 22222211 244555555544443 345555555555543 3333332221 232222223323
Q ss_pred CCChhHHHHHHHHHHh
Q 008827 482 SNDSRLRTAAVWAVLN 497 (552)
Q Consensus 482 ~~~~~~~~~a~~~l~~ 497 (552)
-++...+..++..|..
T Consensus 637 WP~s~~C~~Aa~rLA~ 652 (2710)
T PRK14707 637 WPGTEVCAEVARLLAG 652 (2710)
T ss_pred CCCchHHHHHHHHHHH
Confidence 3555666666665544
No 158
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=1.5 Score=46.60 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=44.6
Q ss_pred CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 434 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 434 ~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
.+..++..|..+|.++..+++..+..|. ..+.+++.+.|.++|..|...+.++-
T Consensus 478 En~ivRaaAv~alaKfg~~~~~l~~sI~------------vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQDVVLLPSIL------------VLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCccccHH------------HHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 4677889999999999977775554443 57788999999999999999999887
No 159
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.45 E-value=0.041 Score=57.14 Aligned_cols=233 Identities=18% Similarity=0.168 Sum_probs=152.2
Q ss_pred ccccchhhhccCcHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 281 KNLSAGSFMNETIVIPLVRLLDDTS--TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 358 (552)
Q Consensus 281 ~~~~~~~~~~~~~i~~Lv~lL~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL 358 (552)
++.... ++...++|.|+..+.-.+ ..+.... ..++..... .+ .+.+.+|.++++.+..+..+|..-+.-+
T Consensus 283 ~~~pe~-i~~~kvlp~Ll~~~~~g~a~~~~ltpl-~k~~k~ld~-~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i 354 (690)
T KOG1243|consen 283 DNFPEE-IIASKVLPILLAALEFGDAASDFLTPL-FKLGKDLDE-EE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYI 354 (690)
T ss_pred hhhhHH-HHHHHHHHHHHHHhhccccchhhhhHH-HHhhhhccc-cc-----cccchhhhHHHHhcCcchHHHHHHHHhH
Confidence 344444 666677777777775443 1221111 111111111 11 4568999999999999999999887777
Q ss_pred HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhH
Q 008827 359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 438 (552)
Q Consensus 359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v 438 (552)
-.+... ..+.+++..+++++..-+.+.++-++++++..+..++..-.. ..++.. ++..+.++-. ..+..+
T Consensus 355 ~~~i~~----Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~---~~Ln~E--llr~~ar~q~-d~~~~i 424 (690)
T KOG1243|consen 355 EKYIDH----LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK---RNLNGE--LLRYLARLQP-DEHGGI 424 (690)
T ss_pred HHHhhh----cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---hhhcHH--HHHHHHhhCc-cccCcc
Confidence 666543 334667777899999999999999999999888877643211 122212 5666665444 367788
Q ss_pred HHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC
Q 008827 439 EIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG 517 (552)
Q Consensus 439 ~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g 517 (552)
+....-+|+.++.. .+..|+.+.. .+..+-++++-...|.++.+++...... ....+ +...
T Consensus 425 rtntticlgki~~~l~~~~R~~vL~-----------~aftralkdpf~paR~a~v~~l~at~~~--~~~~~-----va~k 486 (690)
T KOG1243|consen 425 RTNTTICLGKIAPHLAASVRKRVLA-----------SAFTRALKDPFVPARKAGVLALAATQEY--FDQSE-----VANK 486 (690)
T ss_pred cccceeeecccccccchhhhccccc-----------hhhhhhhcCCCCCchhhhhHHHhhcccc--cchhh-----hhhh
Confidence 99988899988764 2223443332 3444567777788999999888765521 01111 2344
Q ss_pred cHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827 518 IVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 518 ~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~ 549 (552)
+++.+..+.-|++..+|..|..++..+..-.+
T Consensus 487 Ilp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 487 ILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred ccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 67888888888899999999999988776544
No 160
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.17 Score=52.74 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=71.7
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc-CChHh
Q 008827 291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL-AEDKC 369 (552)
Q Consensus 291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~ 369 (552)
.+.+..+++...+++..||...+..|..+.......- .-+-.+....+..-+.+..+.||.+|+.+|+.+-.. .++++
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid-d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID-DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 3555666666778899999999999998886433322 233356777788888888899999999999999531 12211
Q ss_pred HHHHHHhhcHHHHHhhhc-CCChhHHHHHHHHH
Q 008827 370 KEEIFMELTASLLASLIC-DPEPSVQEQALALV 401 (552)
Q Consensus 370 ~~~i~~~~~~~~l~~ll~-~~~~~v~~~a~~~L 401 (552)
-+.+.+..+++ +++++|+..++..+
T Consensus 163 -------~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 163 -------PVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -------cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 24556666664 67888888776443
No 161
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.057 Score=56.90 Aligned_cols=217 Identities=15% Similarity=0.120 Sum_probs=151.3
Q ss_pred CCccHHHHHHHHhcCChhhHHHHHHHHH-HHhhhCCCcchhhhhHHhHHHHHHHhcCCCCc--hhchHHHHHHHhhcCCH
Q 008827 119 TGRTLSCIIEIVKDRFARTRLLASLCLI-VIRNASPCYLQDVGIKTKLINNLLELLDDPGR--VGDEASFAFSSLIAEKE 195 (552)
Q Consensus 119 ~~~~l~~l~~ll~~~~~~vr~~A~~~L~-~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~--v~~~a~~~L~~l~~~~~ 195 (552)
..++...++++.......-+..+.++|. .+... .-.....++.+.+.+..+.. -..++..++.||++.+.
T Consensus 502 k~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-------~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~ 574 (748)
T KOG4151|consen 502 KPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-------GERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISE 574 (748)
T ss_pred cccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-------CCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcch
Confidence 3678888899888888888888888887 22111 11223466666666653322 24688899999999888
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh-cccHHHHHHhcCCCCHHHHHHHHHHHH
Q 008827 196 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVDALAHDSSDVRSAACMCLR 274 (552)
Q Consensus 196 ~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~lv~~L~~~~~~v~~~a~~~L~ 274 (552)
..+..+....+++.+-+++... ++..+.+++..+.||...+.-+...+.+ ...+|.....+.........+++.++.
T Consensus 575 s~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a 652 (748)
T KOG4151|consen 575 SDRQKILKEKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALA 652 (748)
T ss_pred hhHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcccccc
Confidence 8877788887888877766554 4778899999999998765555555565 457888888888878888888888887
Q ss_pred HhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc
Q 008827 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK 344 (552)
Q Consensus 275 ~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 344 (552)
.++....+.|............++.++.++++++|......+.|+..........+.+...++.+..+-+
T Consensus 653 ~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~ 722 (748)
T KOG4151|consen 653 AITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQK 722 (748)
T ss_pred chhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 5654445544421334566778888999999999999999999865443344445555555555554443
No 162
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.36 E-value=1.9 Score=46.79 Aligned_cols=131 Identities=11% Similarity=0.145 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhh
Q 008827 391 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAEN 470 (552)
Q Consensus 391 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~ 470 (552)
+.++.++.-+++++|..+.+..+. .+|.|++-|+-+....++-+..-+++.++. +..++. .
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr-------~~P~lvkeLe~~~~~aiRnNiV~am~D~C~-----~YTam~-------d 1005 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR-------LMPMLVKELEYNTAHAIRNNIVLAMGDICS-----SYTAMT-------D 1005 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHHhhhHHHHhcceeeeehhhHH-----HHHHHH-------H
Confidence 357777888888888765433222 578888877764555666666666666654 222332 4
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827 471 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 471 ~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~ 548 (552)
.++|.+-..|.++++-+|+.+...|.+|... + ..+..-.=.+..+..+ -|.+++++.-|...+..+...-
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~---~----~vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQF---G----IVKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---h----hhhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhhc
Confidence 6779999999999999999999999999841 1 1111111112233333 4678999999999998887654
No 163
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.35 E-value=0.012 Score=47.35 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=58.0
Q ss_pred hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 422 ~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
++..|.++|..+.++.+..-||.-|+.++..-|..+. +++ +.|+-..++.++.++|++||.+|..++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~-ii~------~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN-IIE------KLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH-HHH------HHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH-HHH------hcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7888889996657888899999999999987776555 444 3788899999999999999999999998776
No 164
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.31 E-value=0.13 Score=53.24 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=78.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 330 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 330 (552)
+..++.+..+++..||..|.+.|..+++..+.. -..+...|+++|+.+++.-...+-.+|..+....+.
T Consensus 61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~------v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k----- 129 (556)
T PF05918_consen 61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH------VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK----- 129 (556)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-------HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH-----
T ss_pred HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH------HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH-----
Confidence 455556666677889999999999998874332 235678899999999888888888888877653332
Q ss_pred HhhCcHHHHHHhhc---CCCHHHHHHHHHHHHHhcccCChH-hH-HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHh
Q 008827 331 IRLGGVKLLVQLSK---SMDSTIRLNALRALRNLIFLAEDK-CK-EEIFMELTASLLASLICDPEPSVQEQALALVRNL 404 (552)
Q Consensus 331 ~~~g~i~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~~~~-~~-~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l 404 (552)
+.+..+...+. ++++.+|+.++..|..-.....++ .. ..-.+..++..+..+|.+...+--.-.+.+|+.+
T Consensus 130 ---~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~l 205 (556)
T PF05918_consen 130 ---GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSL 205 (556)
T ss_dssp ---HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhC
Confidence 44455555444 567889999998886433321111 11 1223344445555555554443333344444444
No 165
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.30 E-value=1.7 Score=47.00 Aligned_cols=202 Identities=13% Similarity=0.127 Sum_probs=123.9
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH
Q 008827 220 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR 299 (552)
Q Consensus 220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~ 299 (552)
.+.++..|+++++..|+- ... .-...+++..+.++....+.++--.-..+|...+.-.+.... ..++.+.|....
T Consensus 504 ~~~~ki~a~~~~~~~~~~--~vl-~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a--s~~skI~P~~i~ 578 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKV--KVL-LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA--SMESKICPLTIN 578 (1005)
T ss_pred CCchhHHHHHHHHhccCc--eec-cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh--hhhcchhHHHHH
Confidence 355778888888887731 111 112235677777777777777777777778777655333222 245566666666
Q ss_pred hhc--CCCHHHHHHHHHHHHHhhc---CCchhHHHHHhhCcHHHHHHhhcCCC----HHHHHHHHHHHHHhcccCChHhH
Q 008827 300 LLD--DTSTAVQVAALGAISNIVV---DFTTRRSTFIRLGGVKLLVQLSKSMD----STIRLNALRALRNLIFLAEDKCK 370 (552)
Q Consensus 300 lL~--~~~~~v~~~a~~aL~nl~~---~~~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~aL~~l~~~~~~~~~ 370 (552)
+.- ++||-+...+-..+-.+.. ..++. ..-.+|.++..+..++ .....-++..|..+.++.++...
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-----~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~ 653 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPM-----QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP 653 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence 542 5677555555554444432 22222 2357899999988765 55666677888878787766655
Q ss_pred HHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc----hHHHHHHHhcc
Q 008827 371 EEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI----ILDAVGRQLRI 432 (552)
Q Consensus 371 ~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~----~~~~l~~~L~~ 432 (552)
..+... .++.+.+. +.++|.....++-.+|+.+....+++...--.++|. ++..+.++|+-
T Consensus 654 ~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 654 NLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP 719 (1005)
T ss_pred HHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC
Confidence 555544 45555554 567778888899999999987765443332222331 56666666653
No 166
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.29 E-value=0.16 Score=54.45 Aligned_cols=249 Identities=18% Similarity=0.122 Sum_probs=146.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHhccc-HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC
Q 008827 226 GILLALADMCSKLECCRSRCLSLQV-LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT 304 (552)
Q Consensus 226 ~a~~aL~~l~~~~~~~~~~~~~~~~-l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 304 (552)
++.+.+.+++...+..+..+...+. -.-...+. ++.+.+..|...+..+... --.|.. -....+...++.+|++
T Consensus 752 ~~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~--gs~dls~~al~~l~Wv~Ka-Ll~R~~-~~s~~ia~klld~Ls~- 826 (1030)
T KOG1967|consen 752 NALKTTANLKLKEEAIRQLFSAKFVSEKKVENYC--GSLDLSEIALTVLAWVTKA-LLLRNH-PESSEIAEKLLDLLSG- 826 (1030)
T ss_pred cchhhhhhhhcccHHHHHHHHHHhhhhHhHhhcc--CCcchhhHHHHHHHHHHHH-HHHcCC-cccchHHHHHHHhcCC-
Confidence 3455555666555555433322111 11111122 3444455555554444322 011111 1223445667777765
Q ss_pred CHHHHHHHHHHHHHhhcCCchhH-------------HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827 305 STAVQVAALGAISNIVVDFTTRR-------------STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 371 (552)
Q Consensus 305 ~~~v~~~a~~aL~nl~~~~~~~~-------------~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 371 (552)
|++-..++.++.-+..+.+..+ +.+. ...+|.+++..+..+...+.+=+.+|.+...+.+ ++
T Consensus 827 -~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP---~~ 901 (1030)
T KOG1967|consen 827 -PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVP---KQ 901 (1030)
T ss_pred -ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCC---HH
Confidence 4566677777777666654432 2222 4688999998887777788888899998876543 23
Q ss_pred HHHH--hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-cCchHHHHHHHhcccCc---hhHHHHHHHH
Q 008827 372 EIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-DGIILDAVGRQLRIASK---AEIEIQGMYV 445 (552)
Q Consensus 372 ~i~~--~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~~~~~~l~~~L~~~~~---~~v~~~a~~~ 445 (552)
.+.. ....|.|++.|.-+|..++..++.++.-+..-.+. ++.+ .+.+++.+..+=.+ ++ ..|++.|+.+
T Consensus 902 vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t----L~t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqc 976 (1030)
T KOG1967|consen 902 VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET----LQTEHLSTLVPYLLSLSSD-NDNNMMVVREDALQC 976 (1030)
T ss_pred hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc----cchHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHH
Confidence 3332 23578889999999999999988888776543321 1111 12245555443223 33 4689999999
Q ss_pred HHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHH
Q 008827 446 LGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 496 (552)
Q Consensus 446 L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~ 496 (552)
|..++..-|..+-.-.. ..++..|.+.|.++...+|++|+.+=.
T Consensus 977 L~aL~~~~P~~~l~~fr-------~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 977 LNALTRRLPTKSLLSFR-------PLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHhccCCCccccccc-------HHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 99999844421111111 466788999999999999999986543
No 167
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.27 E-value=0.47 Score=50.95 Aligned_cols=271 Identities=12% Similarity=0.081 Sum_probs=160.2
Q ss_pred HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcH
Q 008827 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV 207 (552)
Q Consensus 129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 207 (552)
+..+..+.+|..|.+.++..++.... .-...+++..|+++... +.++-.-...+|+....-+++.. ...+....
T Consensus 499 l~~~~~~~~ki~a~~~~~~~~~~~vl----~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~ 573 (1005)
T KOG2274|consen 499 LTMDVPPPVKISAVRAFCGYCKVKVL----LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKIC 573 (1005)
T ss_pred hccCCCCchhHHHHHHHHhccCceec----cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchh
Confidence 44577888888888887776643221 12346788888888874 45676777788888888887753 23345556
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC----HHHHHHHHHHHHHhhcccccc
Q 008827 208 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS----SDVRSAACMCLRSVSRSIKNL 283 (552)
Q Consensus 208 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~----~~v~~~a~~~L~~ls~~~~~~ 283 (552)
|.++.++...+.+|.+...+-..+..++.. ..+...+ ..-.+|.++..|..+. +.....+...|..+-+..++.
T Consensus 574 P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 574 PLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence 777776655556787766666666666542 1221111 2247999999998665 678888888888776654432
Q ss_pred cchhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcH------HHHHHhhcCCCHHHHHHHHH
Q 008827 284 SAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV------KLLVQLSKSMDSTIRLNALR 356 (552)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i------~~L~~ll~~~~~~v~~~a~~ 356 (552)
-.. ..-.-+.|++.+.. .++|.++...+..+|+.+.....+........++. ..+-++|.-. +-..++.
T Consensus 652 L~~-~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~---~sds~a~ 727 (1005)
T KOG2274|consen 652 LPN-LLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPE---TSDSAAA 727 (1005)
T ss_pred ccH-HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCc---cchhHHH
Confidence 222 23345567777765 46788999999999998886544332223333332 2333444322 1222222
Q ss_pred HHHHhc----ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch
Q 008827 357 ALRNLI----FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS 411 (552)
Q Consensus 357 aL~~l~----~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 411 (552)
..+.+. ...+.+.. .-++......+.++-......+..+-+.++.++...+.+.
T Consensus 728 ~VG~lV~tLit~a~~el~-~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~ 785 (1005)
T KOG2274|consen 728 FVGPLVLTLITHASSELG-PNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQ 785 (1005)
T ss_pred HHhHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHH
Confidence 233221 11111100 0001111233445555677788888888899998877654
No 168
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.27 Score=51.45 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=81.3
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHh--hcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhh
Q 008827 379 ASLLASLICDPEPSVQEQALALVRNL--VDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH 456 (552)
Q Consensus 379 ~~~l~~ll~~~~~~v~~~a~~~L~~l--~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~ 456 (552)
=+.+-+++.+.|+-++...+..+.-- ..++.. ++..|...=-+..+..|++.|..+|+.+...+++.
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk-----------air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK-----------AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh-----------hHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 34556677777777776655444322 222222 34444443223488999999999999988766533
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhc-CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHH
Q 008827 457 KEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKL 535 (552)
Q Consensus 457 ~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~ 535 (552)
.+..|.+|. |-|+.||-.++.+|+-.|. .-|..+ ++..|..|..|+..=||.
T Consensus 590 ----------------~~s~V~lLses~N~HVRyGaA~ALGIaCA--GtG~~e---------Ai~lLepl~~D~~~fVRQ 642 (929)
T KOG2062|consen 590 ----------------LPSTVSLLSESYNPHVRYGAAMALGIACA--GTGLKE---------AINLLEPLTSDPVDFVRQ 642 (929)
T ss_pred ----------------chHHHHHHhhhcChhhhhhHHHHHhhhhc--CCCcHH---------HHHHHhhhhcChHHHHHH
Confidence 255667775 5689999999999997775 123222 244555566666666777
Q ss_pred HHHHHHHHH
Q 008827 536 RVKTALEQF 544 (552)
Q Consensus 536 ~a~~al~~~ 544 (552)
-|..|+..|
T Consensus 643 gAlIa~amI 651 (929)
T KOG2062|consen 643 GALIALAMI 651 (929)
T ss_pred HHHHHHHHH
Confidence 777776544
No 169
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.21 E-value=0.0075 Score=35.94 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=26.2
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRS 279 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~ 279 (552)
++|.++++++|++++||.+|+.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 479999999999999999999999998753
No 170
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.19 E-value=0.0074 Score=35.99 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=25.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827 293 IVIPLVRLLDDTSTAVQVAALGAISNIVV 321 (552)
Q Consensus 293 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 321 (552)
++|.++++++|++++||.+|+.+|++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999874
No 171
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.16 E-value=1.5 Score=43.02 Aligned_cols=204 Identities=13% Similarity=0.127 Sum_probs=137.4
Q ss_pred HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc----hhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA----GSFMN--ETIVIPLVRLLDDTSTAVQVAALGAI 316 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~----~~~~~--~~~i~~Lv~lL~~~~~~v~~~a~~aL 316 (552)
..+...+.++.++..|..-+.+.|+.++....++-+.....+. .++.. ..++..|+..- +++++-..+-..|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHH
Confidence 3455668899999999999999999999999998665332221 11111 12333333333 3556666777777
Q ss_pred HHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh---hcHHHHHhhhcCCChhH
Q 008827 317 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME---LTASLLASLICDPEPSV 393 (552)
Q Consensus 317 ~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~---~~~~~l~~ll~~~~~~v 393 (552)
...+. ++...+.+++...+..+.++.+.++.++...|..++..+... .+..-.+.+.. ........+|.+++.-.
T Consensus 148 Rec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 148 RECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 77665 455566888888889999999999999999999999987552 23333344433 24567788999999999
Q ss_pred HHHHHHHHHHhhcCCcc---hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827 394 QEQALALVRNLVDGRIN---SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 453 (552)
Q Consensus 394 ~~~a~~~L~~l~~~~~~---~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~ 453 (552)
+.+++.+|+.+...... ...++=+.. -+..++.+|++ +...|+-.|..++--+.+.+
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~--nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPE--NLKLMMNLLRD-KSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HH--HHHHHHHHTT--S-HHHHHHHHHHHHHHHH-S
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHH--HHHHHHHHhcC-cchhhhHHHHHHHHHHHhCC
Confidence 99999999999865321 112222222 46777788887 88889999999988777643
No 172
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.11 E-value=0.12 Score=50.04 Aligned_cols=162 Identities=12% Similarity=0.044 Sum_probs=101.6
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhh---
Q 008827 84 SLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV--- 159 (552)
Q Consensus 84 ~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~--- 159 (552)
..+++ +..+|+.+++|||-.|--+.... ...++.+...++.++..+|..|.+++..+....+....+.
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a--------~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELA--------KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 45555 67999999999999887665543 3456667777777899999999999999877543221111
Q ss_pred ----hhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHH-hCcHHHHHHhhhcCC--CChhhHHHHHHHH
Q 008827 160 ----GIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFE-VNGVDKLYNHLQKGS--LHPRRFEGILLAL 231 (552)
Q Consensus 160 ----~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~L~~~~--~~~~~~~~a~~aL 231 (552)
......+..+.+.+. ++++++..|+..+++|.-.+.- .+ ...+..|+-..-++. .++.+|+.-...+
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i-----~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI-----SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 223567888888887 5568899999999887643211 11 233444443333322 2245555555566
Q ss_pred HHhhcCChhHHHHHHhcccHHHHHHhcC
Q 008827 232 ADMCSKLECCRSRCLSLQVLKLVVDALA 259 (552)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~lv~~L~ 259 (552)
-..+..++..+ ......++|.+-.+.+
T Consensus 181 p~y~~s~~~~Q-~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 181 PVYASSSPENQ-ERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHcCCHHHH-HHHHHHHHHHHHHHHh
Confidence 66666554443 3444455666555554
No 173
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.09 E-value=0.017 Score=46.48 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=60.3
Q ss_pred cCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 291 ETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 291 ~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
..++..|+++|. +.|+.+...||.=|+.++...+..+..+-+.|+=..+++++.++|++||.+|+.++..+.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 356888999995 458899999999999999988888877777788899999999999999999999988764
No 174
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.09 E-value=3.7 Score=47.04 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=69.8
Q ss_pred cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827 76 AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154 (552)
Q Consensus 76 ~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~ 154 (552)
.+.+..++..|.. ...+|..|++||..+..-++.+.- .......+-.-+.|....||.+|+..++.+.-..++
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~------~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS------RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc------CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 3556677777775 468999999999999877766531 133445556677888999999999999876654332
Q ss_pred cchhhhhHHhHHHHHHH-hcCCCCchhchHHHHHHHhhcCCHHH
Q 008827 155 YLQDVGIKTKLINNLLE-LLDDPGRVGDEASFAFSSLIAEKEDM 197 (552)
Q Consensus 155 ~~~~~~~~~g~i~~Lv~-ll~~~~~v~~~a~~~L~~l~~~~~~~ 197 (552)
. +. ..-..+.+ +++.+..||..+...+..+....|.+
T Consensus 889 ~-----~~-qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 889 L-----IF-QYYDQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred H-----HH-HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 1 10 11112222 22234456777777777766655544
No 175
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.07 E-value=1.3 Score=43.45 Aligned_cols=203 Identities=11% Similarity=0.134 Sum_probs=136.7
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH-----HHHHHhc--ccHHHHHHhcCCCCHHHHHHHHH
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC-----RSRCLSL--QVLKLVVDALAHDSSDVRSAACM 271 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~-----~~~~~~~--~~l~~lv~~L~~~~~~v~~~a~~ 271 (552)
..++..+.+..|+..|..-+ .+.|..+...+.++....... ...+... .++..++..-+ ++++-..+-.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~--fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ 145 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLD--FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGD 145 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS---HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCC--CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHH
Confidence 34566788889998887753 667778887777776643222 2223222 34555555444 4455556666
Q ss_pred HHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhC---cHHHHHHhhcCCCH
Q 008827 272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG---GVKLLVQLSKSMDS 348 (552)
Q Consensus 272 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~ 348 (552)
.|+...+. +.+.+. +.....+..+.+..+.++-++...|..++..+...+......++..+ ....+..++.++|-
T Consensus 146 mlRec~k~-e~l~~~-iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY 223 (335)
T PF08569_consen 146 MLRECIKH-ESLAKI-ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY 223 (335)
T ss_dssp HHHHHTTS-HHHHHH-HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred HHHHHHhh-HHHHHH-HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence 77777776 555555 66677888899999999999999999999987766655544555543 55677789999999
Q ss_pred HHHHHHHHHHHHhcccCCh-Hh-HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 349 TIRLNALRALRNLIFLAED-KC-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 349 ~v~~~a~~aL~~l~~~~~~-~~-~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
-+|.+++..|+.+...... .. ...+-+..-+..+..+|++.+..+|..|..++--+..+
T Consensus 224 vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 224 VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999999999998753221 11 12233345678888999999999999999888777655
No 176
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=0.053 Score=59.44 Aligned_cols=161 Identities=13% Similarity=0.145 Sum_probs=121.2
Q ss_pred HhHHHHHHHhcCC-----CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC
Q 008827 163 TKLINNLLELLDD-----PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK 237 (552)
Q Consensus 163 ~g~i~~Lv~ll~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~ 237 (552)
..+.|.+++.++. +++++..|.-+|+++..-+..+. ...+|.|+..+... +.|.+|.+++-+++.++.-
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeks-p~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKS-PSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcC-CCceeeecchheccchhhh
Confidence 4478888888862 35689999999999987665543 34588999988866 4688999999999998764
Q ss_pred ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827 238 LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAIS 317 (552)
Q Consensus 238 ~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 317 (552)
-+..-+ ..-+.+...|++.++.||+.|...+..|-.. +. +.-.|.++.+...+.|++++++.-|-....
T Consensus 992 fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 992 FPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN-DM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred cccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 333322 2467788899999999999999999999765 22 345699999999999999999998888887
Q ss_pred HhhcCCchhHHHHHhhCcHHHHHHhhcCC
Q 008827 318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSM 346 (552)
Q Consensus 318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~ 346 (552)
.|+.... .+. +.+|-++.-|.++
T Consensus 1061 Els~k~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1061 ELSSKGN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred Hhhhccc----chh--hhchHHHHhhccC
Confidence 7775321 222 5666666666655
No 177
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.48 Score=50.57 Aligned_cols=229 Identities=13% Similarity=0.142 Sum_probs=142.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 330 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 330 (552)
+...+..+.++-+.+|-.+...++.+.+.. .-+.. +...+++......|++.|+-+--+|...+..|+.-++
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------ 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc------
Confidence 555666777888899999999999998752 23333 5678999999999999999898899887777775433
Q ss_pred HhhCcHHHHHHh-hcCCC---HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827 331 IRLGGVKLLVQL-SKSMD---STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 406 (552)
Q Consensus 331 ~~~g~i~~L~~l-l~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (552)
..++|.+.+. ....+ .+.+...=.++.++....++ .-....+ -.+...+..++++|...+..++..++++|.
T Consensus 801 --e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 801 --EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred --hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 4567777763 33221 22233333455555443221 1112222 345556667788888889999999999985
Q ss_pred CCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCCh
Q 008827 407 GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDS 485 (552)
Q Consensus 407 ~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~ 485 (552)
...-.....+.+ ++..+..+....+.+-++++|...+..+-.|.....-.+...+ .-+...-+..+.+ +++.
T Consensus 877 ~~a~~vsd~~~e---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~----l~Dl~~tl~~~vr~~~dd 949 (982)
T KOG4653|consen 877 LLAFQVSDFFHE---VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL----LIDLDETLLSYVRQHDDD 949 (982)
T ss_pred HHhhhhhHHHHH---HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH----HHHHHHHHHHHHhcCchh
Confidence 533223334433 4566666666667888999999999988876542222222100 0122223333333 3455
Q ss_pred hHHHHHHHHHHhh
Q 008827 486 RLRTAAVWAVLNL 498 (552)
Q Consensus 486 ~~~~~a~~~l~~l 498 (552)
.++..|+.++-.+
T Consensus 950 ~~klhaql~leei 962 (982)
T KOG4653|consen 950 GLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777666444
No 178
>PRK14707 hypothetical protein; Provisional
Probab=96.02 E-value=4.9 Score=47.80 Aligned_cols=461 Identities=15% Similarity=0.066 Sum_probs=233.0
Q ss_pred HHHHHHHHHHcCCCCCCcccccc--cchHHHHHhhcC--CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC
Q 008827 13 AGARSLKMIYQSKMAPKYDFLQE--ENMEFLLSLLNN--ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG 88 (552)
Q Consensus 13 ~~l~~l~~l~~~~~~~~~~~~~~--~~i~~l~~ll~~--~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~ 88 (552)
+|++++.+|.--.-.+ .++..- .-...|.-.|+. .++...+.++-|-.++-..+.-+..+ ...-+..++.-.+.
T Consensus 97 ac~~a~~wia~~~~~~-~~~~~l~~~~~al~~n~~sk~~~~~~c~~a~a~i~~~~~~~~~~~~~l-~~~~~~lllNafSK 174 (2710)
T PRK14707 97 ACMEAIAWIAGELTQA-DDLVGLGGYPSALFLNAFSKNLDSGRCERAVARLARHLRREDKARQTL-NAQNISLALNAFSK 174 (2710)
T ss_pred HHHHHHHHHHHhhcCc-chhhhccchhHHHHHHHHhcCCCchHHHHHHHHHHHHhccccchhhhh-ccccHHHHHHHhhc
Confidence 6888888885333333 344322 223445555542 22333444444444443222211111 11123444444442
Q ss_pred ---CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHH-Hhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827 89 ---SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEI-VKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKT 163 (552)
Q Consensus 89 ---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~l-l~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~ 163 (552)
+...+..+...-..++.++ .....+ +...|..++.. .+- +++..|.+|...-..++... . ....+-..
T Consensus 175 w~~~~~c~~aa~~la~~~~~~d-~~~~~~----~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~-~-l~~~~~~q 247 (2710)
T PRK14707 175 WSDNPDCQAVAPRFAALVASDD-RLRSAM----DAQGVATVLNALCKWPDTPDCGNAVSALAERLADES-R-LRNELKPQ 247 (2710)
T ss_pred CCCCchHHHHHHHHHHHhcCCh-hhhccc----chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcH-H-HHHhCChH
Confidence 3455555555555555543 333333 35667776664 443 45555655544444444432 1 12222223
Q ss_pred hHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH
Q 008827 164 KLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242 (552)
Q Consensus 164 g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~ 242 (552)
|+--.|..+.+- +..+...++.+++.=..+++..+ ...+...+...++-|..= ++..+...+...|..=..+++..+
T Consensus 248 ~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~-~al~~q~vanalNalSKw-pd~~vc~~Aa~~la~rl~~d~~l~ 325 (2710)
T PRK14707 248 ELGNALNALSKWADTPVCAAAASALAERLVDDPGLR-KALDPINVTQALNALSKW-ADLPVCAEAAIALAERLADDPELC 325 (2710)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHH-HhcCHHHHHHHHhhhhcC-CCchHHHHHHHHHHHHHhccHhhh
Confidence 444444444443 34466667666664333444443 233444455555555443 234444445545544334566666
Q ss_pred HHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHH-HhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 008827 243 SRCLSLQVLKLVVDALA-HDSSDVRSAACMCLR-SVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNI 319 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~-~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl 319 (552)
+.+-.. .+...+..|+ =++..++..|+..|. .+... ..++.. .+...+..++.-|+ =++......|+.+|..-
T Consensus 326 ~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d-~~l~~~--l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~ 401 (2710)
T PRK14707 326 KALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVAD-PELRKD--LEPQGVSSVLNALSKWPDTPVCAAAASALAEH 401 (2710)
T ss_pred hccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhccC-Hhhhcc--cchhHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 544333 3444445444 355556555555544 55555 566665 34444555555554 46666777777777766
Q ss_pred hcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHH
Q 008827 320 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALA 399 (552)
Q Consensus 320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~ 399 (552)
..+....++.+--.|+-..|-.+.+=++..+...+..+|..-.. .+++.++.+--.++...|-.+-+.+|..+-.++..
T Consensus 402 l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la-~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~ 480 (2710)
T PRK14707 402 VVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLA-HDTELCKALDPINVTQALDALSKWPDTPICGQTAS 480 (2710)
T ss_pred hccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHh-ccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHH
Confidence 55666667666655666666666666777777777777765433 24455544444445555666667888877777776
Q ss_pred HHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc-hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 008827 400 LVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK 478 (552)
Q Consensus 400 ~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~-~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~ 478 (552)
.|.--...+++. ..-|.... +...| .-|+..++ +...+.+.|+-+.+..... ..+.+-. .++...+-.
T Consensus 481 ~La~~l~~~~~l-~~a~~~q~-~~~~L-~aLSK~Pd~~~c~~A~~~lA~rl~~~~~-l~~~~~~-------~~~~~~lna 549 (2710)
T PRK14707 481 ALAARLAHERRL-RKALKPQE-VVIAL-HSLSKWPDTPICAEAASALAERVVDELQ-LRKAFDA-------HQVVNTLKA 549 (2710)
T ss_pred HHHHHhcccHHH-HhhcCHHH-HHHHH-HHhhcCCCcHHHHHHHHHHHHHhccchh-hhhhhhh-------HHHHHHHHh
Confidence 665544443332 22222110 12222 22333244 3345556666666653221 2222211 344344444
Q ss_pred hhcCCChhHHHHHHHHHHhhcC
Q 008827 479 FLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 479 lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
+-+.++...+..++..|..+..
T Consensus 550 lSKwp~s~~C~~A~~~iA~~l~ 571 (2710)
T PRK14707 550 LSKWPDKQLCAVAASGLAERLA 571 (2710)
T ss_pred hhcCCchhHHHHHHHHHHHHhh
Confidence 5456777788888878877654
No 179
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=0.061 Score=59.01 Aligned_cols=132 Identities=15% Similarity=0.140 Sum_probs=103.0
Q ss_pred HHHHHhhhc----CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827 379 ASLLASLIC----DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454 (552)
Q Consensus 379 ~~~l~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~ 454 (552)
.|.++.+.+ ..+|++|..|.-+|+.+..-+.. ..+. -++.|...|+.++++-|+.++.-+++.++-..+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces---~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCES---HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHH---HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 455555553 46799999999999988754321 2222 478888899877999999999999999998766
Q ss_pred hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHH
Q 008827 455 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK 534 (552)
Q Consensus 455 ~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~ 534 (552)
...+ .+-+.|...|++.++.||+.|..++++|..+ ..+.-.|.+..+...+.|+++.++
T Consensus 994 nlie------------~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---------dmiKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen 994 NLIE------------PWTEHLYRRLRDESPSVRKTALLVLSHLILN---------DMIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred cccc------------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---------hhhHhcccHHHHHHHhcCCcHHHH
Confidence 4433 2336889999999999999999999999962 234456888899999999999988
Q ss_pred HHHH
Q 008827 535 LRVK 538 (552)
Q Consensus 535 ~~a~ 538 (552)
+-|.
T Consensus 1053 dlAk 1056 (1251)
T KOG0414|consen 1053 DLAK 1056 (1251)
T ss_pred HHHH
Confidence 8876
No 180
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.14 Score=51.86 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=99.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 008827 339 LVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFA 417 (552)
Q Consensus 339 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 417 (552)
+-+++.+.++-.|.+.+.+++---.+.. ..+++..++.. ..+.+.+|++.|.-+|+-+|+.+++
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 3345555666666666655542211111 12345556665 6788999999999999999998875
Q ss_pred hcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHh
Q 008827 418 EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 497 (552)
Q Consensus 418 ~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~ 497 (552)
.+.-.+++|..+.++.|+...+.+|+-.++|+-+.. ....|-.++.+++.-||..|+.+++.
T Consensus 586 ----~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~--------------a~diL~~L~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 586 ----LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV--------------ATDILEALMYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred ----hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH--------------HHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 344455666666899999999999997776554211 12455667788888999999999988
Q ss_pred hcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCcc
Q 008827 498 LTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLD 532 (552)
Q Consensus 498 l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~ 532 (552)
+..-..+.-..+ -.++++.+.+++.+..++
T Consensus 648 Il~Q~n~~Lnp~-----v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 648 ILMQCNPELNPN-----VKRIIKKFNRVIVDKHES 677 (926)
T ss_pred HHhhcCcccChh-----HHHHHHHHHHHHhhhhHh
Confidence 874211111111 124566777766544433
No 181
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.87 E-value=1.4 Score=40.20 Aligned_cols=141 Identities=12% Similarity=0.128 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 384 (552)
Q Consensus 310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 384 (552)
.+|...+-.++ ..++-+..+.++..=-.+..++.. +.+..|..+++.++.+...++.+....++...+++..++
T Consensus 97 cnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 34444443444 456667677777654455555543 457799999999999999888888888889999999999
Q ss_pred hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhh------cCchHHHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827 385 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAE------DGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG 452 (552)
Q Consensus 385 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~------~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~ 452 (552)
.+..+++.-+.-|..++..+..++. ...|+... .+.++..++..+.+.+++....+++.+..+++..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999886653 34444332 1113444444444447777777788887777753
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.86 E-value=0.86 Score=44.23 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=109.6
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhH
Q 008827 292 TIVIPLV-RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK 370 (552)
Q Consensus 292 ~~i~~Lv-~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 370 (552)
+.+..++ ..++++++.+|+.|..+|+-.+.-..... ...++.+...++.+++.++..|+.++..+...-+...-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4455544 56788999999999999997775443221 13456677777777999999999999887542221111
Q ss_pred H-------HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchH-HHHHhhcCchHHHHHH-Hhcc--cCchhHH
Q 008827 371 E-------EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV-EYIFAEDGIILDAVGR-QLRI--ASKAEIE 439 (552)
Q Consensus 371 ~-------~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~~~~~~l~~-~L~~--~~~~~v~ 439 (552)
. ..........+.+.+.+.+++++..++..+..|.-.+.-.- .. ++..|+- .++. ..++..+
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~-------vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPK-------VLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHH-------HHHHHHHHHcCcccCCcHHHH
Confidence 1 12234567788888999999999999999999875532111 22 2333322 2221 2345666
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC
Q 008827 440 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 483 (552)
Q Consensus 440 ~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~ 483 (552)
..-.+.+-.++..++.+...+ . ..+++.+-.+.+..
T Consensus 174 Q~L~~Ffp~y~~s~~~~Q~~l-~-------~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 174 QCLSVFFPVYASSSPENQERL-A-------EAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHcCCHHHHHHH-H-------HHHHHHHHHHHhCc
Confidence 666667777777666554444 3 46667777766543
No 183
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.80 E-value=1.5 Score=43.78 Aligned_cols=239 Identities=18% Similarity=0.179 Sum_probs=127.9
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CH-HHHHHHHHHHHHhhccccccc
Q 008827 207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SS-DVRSAACMCLRSVSRSIKNLS 284 (552)
Q Consensus 207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~-~v~~~a~~~L~~ls~~~~~~~ 284 (552)
+.-+++-|... .+..+|..++..|+.-|. ++..|..+..+|..+.+.+.+.+. +. ..-..++.++.-+++......
T Consensus 23 v~ylld~l~~~-~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESS-SSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHhhcccC-CCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 44555556633 346678888888888775 678999999999999999999643 33 333444444455555422211
Q ss_pred chhhhccCcHHHHHHhhc-CCC----HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh---c------CCCHHH
Q 008827 285 AGSFMNETIVIPLVRLLD-DTS----TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS---K------SMDSTI 350 (552)
Q Consensus 285 ~~~~~~~~~i~~Lv~lL~-~~~----~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll---~------~~~~~v 350 (552)
. +.+.+....+++++. +.. ......-...+.. .. .+.+..+.+.. . .....-
T Consensus 101 -l-~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 101 -L-LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQ-----QKSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred -h-hhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------HH-----HHHHHHHHHHHhccccccccCCccccc
Confidence 1 234556666677776 110 0000000011100 00 01111111111 0 112223
Q ss_pred HHHHHHHHHHhcc-------------cCChHhHHHHHHhhcHHHHHhhhcC----C-------C-----hhHHHHHHHHH
Q 008827 351 RLNALRALRNLIF-------------LAEDKCKEEIFMELTASLLASLICD----P-------E-----PSVQEQALALV 401 (552)
Q Consensus 351 ~~~a~~aL~~l~~-------------~~~~~~~~~i~~~~~~~~l~~ll~~----~-------~-----~~v~~~a~~~L 401 (552)
+.-|+.++-.++. ......|+++.+.|++++++..+.+ . + ......++++|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 3444444444420 0111247788888999999998751 1 1 12445688888
Q ss_pred HHhhcCCcchHHHHHhhcC-chHHHHHHHhccc--CchhHHHHHHHHHHhhcCCChhhHHHHH
Q 008827 402 RNLVDGRINSVEYIFAEDG-IILDAVGRQLRIA--SKAEIEIQGMYVLGNVATGKESHKEAVM 461 (552)
Q Consensus 402 ~~l~~~~~~~~~~i~~~~~-~~~~~l~~~L~~~--~~~~v~~~a~~~L~~la~~~~~~~~~i~ 461 (552)
-|.+....++..+.....+ .....+..++... ........++..+.|++..++...+.+-
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~ 309 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA 309 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh
Confidence 8888776666666665532 1222222222220 2234467889999999998865555443
No 184
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.75 E-value=0.081 Score=45.73 Aligned_cols=149 Identities=22% Similarity=0.218 Sum_probs=96.3
Q ss_pred cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827 206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 285 (552)
Q Consensus 206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 285 (552)
.+..++..|.....++++|..+.-++..+- +..++.. ..-+-+.+-..+..++.+-...+..++..+=...+..+.
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345566656541134678888888888873 2222222 222344455555555555666677777766554455555
Q ss_pred hhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 008827 286 GSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDST-IRLNALRALRN 360 (552)
Q Consensus 286 ~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~-v~~~a~~aL~~ 360 (552)
..+...|+++.++.++. ..+..++..++.+|..-+ ....+|. .+...+++.|-++.+ ++++. +|..|+-.|+.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 54567899999999998 788999999999996555 4555554 444678899999985 45566 78888777654
No 185
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.82 Score=48.94 Aligned_cols=214 Identities=18% Similarity=0.122 Sum_probs=128.9
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh
Q 008827 221 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 300 (552)
Q Consensus 221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l 300 (552)
+.++-.++..+..+..+- .-...+...+++...+..+++.++-|-..+...+..|+.- ....++|.+...
T Consensus 741 vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev---------y~e~il~dL~e~ 810 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV---------YPEDILPDLSEE 810 (982)
T ss_pred ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---------cchhhHHHHHHH
Confidence 557888999999988632 3334566778999999999999998988888877777653 456778888884
Q ss_pred h-cC---CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh
Q 008827 301 L-DD---TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME 376 (552)
Q Consensus 301 L-~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~ 376 (552)
- +. ..++.+...-.++.+++..-++.-..... -.+..++....+++...|..++.+++++|.-..-.... .+.+
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~e 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHE 888 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHH
Confidence 3 32 11233333335666655433332222222 45667777778888889999999999997632211111 2211
Q ss_pred hcHHHHHhhhc-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc-hHHHHHHHhcccCchhHHHHHHHHHH
Q 008827 377 LTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAVGRQLRIASKAEIEIQGMYVLG 447 (552)
Q Consensus 377 ~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~-~~~~l~~~L~~~~~~~v~~~a~~~L~ 447 (552)
....++.+.+ ++++-+++.|+.++..+..+.....-.+.+..-. ....+.+....++++.++..++-++-
T Consensus 889 -v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 889 -VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred -HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 2333444443 6677899999999999987643222222221100 22333333444455555555555443
No 186
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=6.1 Score=44.24 Aligned_cols=227 Identities=14% Similarity=0.154 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccchhhhc---cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827 259 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN---ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 335 (552)
Q Consensus 259 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~ 335 (552)
++.+..+|..+-..|..++...+ ... +.+ ..+...|.+-+++.+...+..++.+|..+....+..-..++...+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s--~~~-~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPS--GEG-LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCc--hhh-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35588999999999999987621 111 111 123334444555667788888888888887655522223343334
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcc--c--CChHhH-HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 336 VKLLVQLSKSMDSTIRLNALRALRNLIF--L--AEDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~--~~~~~~-~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
.+.++.+ +..|...|+++...|..++. . .+-+.+ ...+++ .+..|...+..+.+.+....+-+++.+......
T Consensus 741 ~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 741 PEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444 77788889988888887761 0 000111 223332 233333333344444444334455554422111
Q ss_pred hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHH
Q 008827 411 SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTA 490 (552)
Q Consensus 411 ~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~ 490 (552)
.....+-+. +++.+...|.+ +++++...|+..+.-+....+... +.. +...+++.+..++++....+|..
T Consensus 819 ~ld~~~l~~--li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~---l~~----~~~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 819 ILDDETLEK--LISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEEC---LSP----HLEELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred cccHHHHHH--HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHH---Hhh----hHHHHHHHHHHHHHhhhHHHHHH
Confidence 111111111 56667677777 899999999999998888766322 221 12457788888888888899999
Q ss_pred HHHHHHhhcC
Q 008827 491 AVWAVLNLTC 500 (552)
Q Consensus 491 a~~~l~~l~~ 500 (552)
.-..+-.|+.
T Consensus 889 vr~LlekLir 898 (1176)
T KOG1248|consen 889 VRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHH
Confidence 9888888874
No 187
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.22 E-value=2 Score=43.73 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=113.8
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH----HHHHHHHHHHHHhhccccccc
Q 008827 209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS----DVRSAACMCLRSVSRSIKNLS 284 (552)
Q Consensus 209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~----~v~~~a~~~L~~ls~~~~~~~ 284 (552)
.+.+.+.+++ ..-+..++..+..++. +......+....++..+..++.++.. .+......++..+-.. ....
T Consensus 87 ~i~e~l~~~~--~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh-gvvs 162 (713)
T KOG2999|consen 87 RIMEILTEGN--NISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH-GVVS 162 (713)
T ss_pred HHHHHHhCCC--cHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-ceee
Confidence 5566676664 3344558888888876 45677788889999999999987754 4445555555544333 2222
Q ss_pred chhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 285 AGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 285 ~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
+. .....++.....+.+ ..+..+...|...|-+++.+.....+.+.+.--+..++..++.++..++..|+..+..+.
T Consensus 163 W~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 22 233444555555543 346778899999999999887777888888899999999999999999999888888887
Q ss_pred ccCChHhHHHHHH
Q 008827 363 FLAEDKCKEEIFM 375 (552)
Q Consensus 363 ~~~~~~~~~~i~~ 375 (552)
...+++.|..+.+
T Consensus 242 ~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 242 RKAPDDKRFEMAK 254 (713)
T ss_pred hhCChHHHHHHHH
Confidence 6665555544443
No 188
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.17 E-value=0.22 Score=43.00 Aligned_cols=139 Identities=18% Similarity=0.237 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 008827 345 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD 424 (552)
Q Consensus 345 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~ 424 (552)
...+++|..+.-++..+- +...+-.....-+.+..++...+.+-...++.++..+.-+.|+....++...| +++
T Consensus 16 ~~~~~~r~~a~v~l~k~l-----~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg-~~~ 89 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-----DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG-FLE 89 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT-HHH
T ss_pred CCCHhHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh-HHH
Confidence 346678888888888773 12223333444566666777666667788899999999998888888877666 788
Q ss_pred HHHHHhc-ccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCChh-HHHHHHHHHHhh
Q 008827 425 AVGRQLR-IASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSR-LRTAAVWAVLNL 498 (552)
Q Consensus 425 ~l~~~L~-~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~-~~~~a~~~l~~l 498 (552)
.+..+.. ..++..++..++.+|..-+ .+...|..|.. .+++.|...++ ++|.. +|..|+-.|+.+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~--------~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 90 SLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISK--------NYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHH--------HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHH--------HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 8888887 2266777778888776554 46656666664 55688999995 55566 888888777653
No 189
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=2.1 Score=44.94 Aligned_cols=105 Identities=20% Similarity=0.195 Sum_probs=66.5
Q ss_pred hHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827 161 IKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 239 (552)
Q Consensus 161 ~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 239 (552)
...|.+..+++-.. .+..||..++..|..+.....+....+++ +...++..-+.+. .|.+|-+|+.+|+.+-.++.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr--ep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR--EPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc--CchHHHHHHHHHHHHhcCCC
Confidence 34556666666555 34678999999998887533222222222 3345565556665 37899999999999864221
Q ss_pred hHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHH
Q 008827 240 CCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCL 273 (552)
Q Consensus 240 ~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L 273 (552)
+- +..+...+..+++ +++++||.++...|
T Consensus 159 de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 159 DE-----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred CC-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 10 1235666777776 78999999986554
No 190
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.00 E-value=4 Score=40.91 Aligned_cols=174 Identities=16% Similarity=0.202 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCc--hhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHH
Q 008827 304 TSTAVQVAALGAISNIVVDFT--TRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS 380 (552)
Q Consensus 304 ~~~~v~~~a~~aL~nl~~~~~--~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~ 380 (552)
+..+-+..|..-|..+....+ -+-+.+ ..++..+++.+.+ .++..+.-|++.|..++.+... +..--.+..+.
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f--~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~ 374 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHF--AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAIC 374 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHH--HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHH
Confidence 355667777775655544332 222222 2466777888887 7888999999999999885432 11111223444
Q ss_pred HHHhhhcCCChhHHHHHH-HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHH
Q 008827 381 LLASLICDPEPSVQEQAL-ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA 459 (552)
Q Consensus 381 ~l~~ll~~~~~~v~~~a~-~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 459 (552)
-+++.-.+.++++...|. .+++-++..+|.. .+..+..++.+ .+...-..++..+..+..+-. .+.
T Consensus 375 K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~----------~I~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~--~Ee 441 (516)
T KOG2956|consen 375 KVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ----------CIVNISPLILT-ADEPRAVAVIKMLTKLFERLS--AEE 441 (516)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----------HHHHHhhHHhc-CcchHHHHHHHHHHHHHhhcC--HHH
Confidence 555555566666555554 4455555555532 33444444544 555566666666666654322 222
Q ss_pred HHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 460 VMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 460 i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
+.. ++ .++.|.+++...+..+.||+.|++||..+.
T Consensus 442 L~~-ll----~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 442 LLN-LL----PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHH-hh----hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 222 11 477899999999999999999999998776
No 191
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.49 Score=48.08 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=88.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH
Q 008827 297 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM 375 (552)
Q Consensus 297 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~ 375 (552)
+-+++.+.++-+|...+.+++---.+.. +.|++..++.. ..+.|.++|+.|+.||+-.|....
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------- 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------- 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------
Confidence 3345556666677666666542221211 23677777777 667899999999999998887432
Q ss_pred hhcHHHHHhhh-cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827 376 ELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 453 (552)
Q Consensus 376 ~~~~~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~ 453 (552)
..+...+++| .+.++.|+....-+|+-.|.+.-+.. +++.|-.++.+ +++=|+..|+.+++.+....
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~---------a~diL~~L~~D-~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV---------ATDILEALMYD-TNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH---------HHHHHHHHhhC-cHHHHHHHHHHHHHHHHhhc
Confidence 2345556666 46788999999999988887753221 45566566666 77789999999998887643
No 192
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=5.7 Score=40.12 Aligned_cols=250 Identities=15% Similarity=0.027 Sum_probs=127.1
Q ss_pred HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH--hHHHHHHHhc-C-CCCchhchHHHHHHHhhcCCHHHHHHHHHh
Q 008827 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT--KLINNLLELL-D-DPGRVGDEASFAFSSLIAEKEDMQKLAFEV 204 (552)
Q Consensus 129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~--g~i~~Lv~ll-~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 204 (552)
-.++++..+|..|+++|.+.+...+. ..+.+ ..+..++.=| + .+.+|+.++..+|..+...-.. .-++.
T Consensus 266 ka~dp~a~~r~~a~r~L~~~as~~P~----kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~ 338 (533)
T KOG2032|consen 266 KATDPSAKSRGMACRGLGNTASGAPD----KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLES 338 (533)
T ss_pred hccCchhHHHHHHHHHHHHHhccCcH----HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhh
Confidence 44578889999999999999886432 22222 2344444444 3 2467888888877766432111 01112
Q ss_pred CcH---HHHHHhhhcCCCChhhHHHHHHHHHHhhcC-ChhHHHHHHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827 205 NGV---DKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSR 278 (552)
Q Consensus 205 ~~i---~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~ 278 (552)
..+ -.+..++.+. +++.|.++...++.|+.- ...++..+.+ .+...+++--+.++++.+ ..||+.....+.
T Consensus 339 ~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred hchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 222 2444555554 477888888877777652 2234444443 122333444455666655 345554443332
Q ss_pred ccccccchhhhccCcHHHHHHhhc---CCCH-HHHH-HHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827 279 SIKNLSAGSFMNETIVIPLVRLLD---DTST-AVQV-AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353 (552)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~Lv~lL~---~~~~-~v~~-~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 353 (552)
+++.. +.+.++.+ +.+. ..+. ..-|+ ..+...+++.... .......+++++-+.+|..
T Consensus 416 --p~l~r---------ke~~~~~q~~ld~~~~~~q~Fyn~~c-~~L~~i~~d~l~~-----~~t~~~~~f~sswe~vr~a 478 (533)
T KOG2032|consen 416 --PNLVR---------KELYHLFQESLDTDMARFQAFYNQWC-IQLNHIHPDILML-----LLTEDQHIFSSSWEQVREA 478 (533)
T ss_pred --chhHH---------HHHHHHHhhhhHHhHHHHHHHHHHHH-HHHhhhCHHHHHH-----HHHhchhheecchHHHHHH
Confidence 22211 12222222 2221 1111 11111 1222212111110 1122333455556778887
Q ss_pred HHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 354 a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
+...-.++..+..+......-.......+-.+.+++-++++..+..++..+.
T Consensus 479 avl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 479 AVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 7766666654444333334434445666777788999999998888876654
No 193
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.46 E-value=3.9 Score=37.96 Aligned_cols=147 Identities=12% Similarity=0.144 Sum_probs=95.3
Q ss_pred HHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh
Q 008827 311 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL 385 (552)
Q Consensus 311 ~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l 385 (552)
.|...+-.++. .++-|..+++++..-.|..++... .+.+|..+++.++.+....+++.-.-+++...+|.-++.
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 44444445554 566677899888776677777653 367999999999999987777777778888899999999
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHH
Q 008827 386 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA 459 (552)
Q Consensus 386 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 459 (552)
|..++.--+.-|..++..+..++. ..+++.+.. +.++..++..+...+++..-.+.+.+-..++... ..++.
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~a 225 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREA 225 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHH
T ss_pred HHhccHHHHHHHHHHHHHHHcchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHH
Confidence 998888888888888888876532 233332211 0134444444444477777788888888887643 34444
Q ss_pred H
Q 008827 460 V 460 (552)
Q Consensus 460 i 460 (552)
+
T Consensus 226 L 226 (262)
T PF04078_consen 226 L 226 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 194
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.32 E-value=0.86 Score=40.19 Aligned_cols=112 Identities=18% Similarity=0.264 Sum_probs=79.5
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC--------------c---hHHHHHHHhcccCchhHHHHHH
Q 008827 381 LLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG--------------I---ILDAVGRQLRIASKAEIEIQGM 443 (552)
Q Consensus 381 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~--------------~---~~~~l~~~L~~~~~~~v~~~a~ 443 (552)
.+.-++.|+++.++..|+.++..+.++......+.-+..+ . +-..|...|+.+.+..+..+.+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3444567899999999999999999885433332221111 0 2244556666667788888999
Q ss_pred HHHHhhcCCChhhHH--HHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 444 YVLGNVATGKESHKE--AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 444 ~~L~~la~~~~~~~~--~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.++..+....+.++- .++ ..++..+..++.+.|.+++..+..+++.+..
T Consensus 124 K~la~Lv~~tPY~rL~~~ll--------~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLL--------TEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHccCChhhcCHhHH--------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999987775442 222 3555677778889999999999999998874
No 195
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.24 E-value=0.28 Score=45.59 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhc-CCCCcchHHHHHHHHhh-cCChhhHHHHHhcCchHHHH
Q 008827 6 SYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLN-NESENVSGLGASIISHS-CKTSLEQKLLFDAGVLKRLT 83 (552)
Q Consensus 6 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~-~~~~~~~~~l~~~g~i~~L~ 83 (552)
++..++-.|++.|.+++......+.-+-+..++..++.+|. +..+.++.++..+|.++ .+.+.+...+.+.+|+..++
T Consensus 103 ~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~ 182 (257)
T PF08045_consen 103 SNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVC 182 (257)
T ss_pred chhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHH
Confidence 45566778999999998776555334448889999999995 45688999999988874 56677877889999999999
Q ss_pred HhhcC---CHHHHHHHHHHHHHHhc
Q 008827 84 SLLGG---SLIQRDASLESIATIFK 105 (552)
Q Consensus 84 ~lL~~---~~~v~~~al~~L~~l~~ 105 (552)
.++++ +..++.+++.-|.-...
T Consensus 183 ~llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 183 SLLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHccccccHHHhHHHHHHHHHHHc
Confidence 99996 35788888877766543
No 196
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.22 E-value=0.59 Score=48.69 Aligned_cols=143 Identities=14% Similarity=0.212 Sum_probs=103.9
Q ss_pred cHHHHHHhcCC----CCHHHHHHHHHHHHHh-hcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 008827 250 VLKLVVDALAH----DSSDVRSAACMCLRSV-SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 250 ~l~~lv~~L~~----~~~~v~~~a~~~L~~l-s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~ 323 (552)
+-|.+.+.... .+++++.+|.-+|..+ +-+ .+.| ..-+|.++..++ +++|.+|.+|+-.++-++..+
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS-~~fc------~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLS-FEFC------SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHh-HHHH------HHHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 44555555543 6789999998888766 333 2222 345788999997 899999999999999887655
Q ss_pred chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHH
Q 008827 324 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN 403 (552)
Q Consensus 324 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~ 403 (552)
..... ..-..|.+-|.+.+..||..++.++.++.-... +--.|-.+.+..+|.++|..+..-|-..+..
T Consensus 966 N~~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~ 1034 (1128)
T COG5098 966 NTTAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQ 1034 (1128)
T ss_pred hhhhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHH
Confidence 44322 334677788889999999999999998754221 1123556778889999999999888888888
Q ss_pred hhcCCcc
Q 008827 404 LVDGRIN 410 (552)
Q Consensus 404 l~~~~~~ 410 (552)
++..++.
T Consensus 1035 ~a~KdNt 1041 (1128)
T COG5098 1035 IAKKDNT 1041 (1128)
T ss_pred HHhcccc
Confidence 8766543
No 197
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.19 E-value=3.4 Score=41.25 Aligned_cols=275 Identities=18% Similarity=0.170 Sum_probs=141.0
Q ss_pred cchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CH-HHHHHHHHHHHHHhcCChhhh
Q 008827 36 ENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SL-IQRDASLESIATIFKNNPEVV 111 (552)
Q Consensus 36 ~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~-~v~~~al~~L~~l~~~~~~~~ 111 (552)
+-+..+++-+.+ .+.++|..++--|+.-|..+.+|..+...|.++.++..+.+ ++ ..-..++..+..++.+....
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~- 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM- 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch-
Confidence 345667777763 44678888888888888899999999999999999999965 22 22233333344444443222
Q ss_pred hhhccccCCccHHHHHHHHhc-CChhhHHHHH-HHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC------C--CCc--h
Q 008827 112 SQFVGPDTGRTLSCIIEIVKD-RFARTRLLAS-LCLIVIRNASPCYLQDVGIKTKLINNLLELLD------D--PGR--V 179 (552)
Q Consensus 112 ~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~-~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~------~--~~~--v 179 (552)
.+. .+...+..++++++- ....+..... ..=.++++ ...+......+.+. . +++ -
T Consensus 100 -~l~--~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk----------~~~~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 100 -HLL--LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK----------VQQKSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred -hhh--hchhHHHHHHHHhccccccccccchhhhhhhhhhH----------HHHHHHHHHHHHHhccccccccCCccccc
Confidence 111 012333344555551 0000000000 00000000 01112222222221 0 111 1
Q ss_pred hchHHHHHHHhh--------------cCCHHHHHHHHHhCcHHHHHHhhhc----CC-----CC-----hhhHHHHHHHH
Q 008827 180 GDEASFAFSSLI--------------AEKEDMQKLAFEVNGVDKLYNHLQK----GS-----LH-----PRRFEGILLAL 231 (552)
Q Consensus 180 ~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~i~~L~~~L~~----~~-----~~-----~~~~~~a~~aL 231 (552)
+.-|..++..+. ...+.++....+.|++..+++.+.+ .. .. ....+.++++|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 333444444331 1112234445667889999988762 11 01 11345677777
Q ss_pred HHhhcCChhHHHHHHhc--ccHHHHHHh----cCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh----
Q 008827 232 ADMCSKLECCRSRCLSL--QVLKLVVDA----LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL---- 301 (552)
Q Consensus 232 ~~l~~~~~~~~~~~~~~--~~l~~lv~~----L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL---- 301 (552)
-+.+..++.++...... +.++..... ..+........+++.+.|++.+.+..|.. +...++...+..+.
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~-~~s~~l~~~~~~i~~~~~ 325 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEE-FASPKLGQQLGLIVTSFF 325 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHh-hhhhHhccchHHHHHhhc
Confidence 77776555555544432 333333332 22334555788899999999987776665 54443332221111
Q ss_pred ---c-------CCCHHHHHHHHHHHHHhhcCCch
Q 008827 302 ---D-------DTSTAVQVAALGAISNIVVDFTT 325 (552)
Q Consensus 302 ---~-------~~~~~v~~~a~~aL~nl~~~~~~ 325 (552)
+ +..-+...-+.+++.|++..++.
T Consensus 326 ~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 326 CVLSLPNYVPEESSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred ccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence 1 11236777888888888875543
No 198
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.07 E-value=3.1 Score=45.65 Aligned_cols=182 Identities=17% Similarity=0.149 Sum_probs=121.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC--CchhchHHHHHHHhhcCCHHHHHHHHHh
Q 008827 127 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQKLAFEV 204 (552)
Q Consensus 127 ~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 204 (552)
-..+.|.++..|..|+..+......... .......|.+-.+++....+ ..+...++.+|..++.......+ -+..
T Consensus 259 ~t~~~s~~WK~R~Eale~l~~~l~e~~~--~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~-~~~~ 335 (815)
T KOG1820|consen 259 ETEMLSKKWKDRKEALEELVAILEEAKK--EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR-KYAK 335 (815)
T ss_pred HHhhhccchHHHHHHHHHHHHHHhcccc--ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH-HHHH
Confidence 3466789999999999999887765430 01112245555566655533 35667788888888765433211 2234
Q ss_pred CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc-cc
Q 008827 205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-NL 283 (552)
Q Consensus 205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~-~~ 283 (552)
+..|.+++.+.... +.+++.++.++-..+.... -....+.+...++++++.++..+...+...-+... ..
T Consensus 336 ~v~p~lld~lkekk--~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKK--SELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred hhcchHHHHhhhcc--HHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 55678888777653 6778877777666654211 12368889999999999999887766665544433 22
Q ss_pred cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827 284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV 321 (552)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 321 (552)
... -.-.+.+|.++....|.+.+||.+|..+++-+..
T Consensus 407 ~~~-~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEK-ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cch-hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 222 2346778888888899999999999999987654
No 199
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.05 E-value=2 Score=45.37 Aligned_cols=236 Identities=17% Similarity=0.174 Sum_probs=137.5
Q ss_pred CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHH
Q 008827 133 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYN 212 (552)
Q Consensus 133 ~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 212 (552)
.|+.-+..=.+.|..+... ....+..+.++|.|++.+.+..-+ -...-.+..++...+ ...++...+|.|..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~----fp~rv~~~kiLP~L~~el~n~~~v-p~~LP~v~~i~~~~s---~~~~~~~~~p~l~p 356 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPT----FPARVLFQKILPTLVAELVNTKMV-PIVLPLVLLIAEGLS---QNEFGPKMLPALKP 356 (700)
T ss_pred cCcHHHHHHHHHHHHhhcc----CCHHHHHHhhhhHHHHHhcccccc-ccccchhhhhhhccc---hhhhhhhhhHHHHH
Confidence 3445555445555555543 234466788999999888533211 111111122222211 22344556777777
Q ss_pred hhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccC
Q 008827 213 HLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNET 292 (552)
Q Consensus 213 ~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~ 292 (552)
.+..+. +. +.-+..+.++-.--+.....-+...++|.|...+++.+..++..++..+..++...+. . ++...
T Consensus 357 i~~~~~--~~--~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~-~vk~~ 428 (700)
T KOG2137|consen 357 IYSASD--PK--QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---P-FVKQA 428 (700)
T ss_pred HhccCC--cc--cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---H-HHHHH
Confidence 666432 21 2222222222000011112234556799999999999999999999999999876432 2 67778
Q ss_pred cHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827 293 IVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 371 (552)
Q Consensus 293 ~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 371 (552)
++|.+-++. .+++..++..++.++..++...+ ...-..-+.++.+-.+..++.+....+.+..++..... .+.
T Consensus 429 ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD----~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~--~g~ 502 (700)
T KOG2137|consen 429 ILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD----KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY--SGV 502 (700)
T ss_pred HHHHhhcchhcccchHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc--cce
Confidence 889888875 36789999999999998882111 11112334455555566788888887777777654221 124
Q ss_pred HHHHhhcHHHHHhhhcCCC
Q 008827 372 EIFMELTASLLASLICDPE 390 (552)
Q Consensus 372 ~i~~~~~~~~l~~ll~~~~ 390 (552)
.++.+.++|.+.-+...+.
T Consensus 503 ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 503 EVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred eeehhhhhhhhhhhhhccc
Confidence 5566667777777665544
No 200
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.95 E-value=3.7 Score=41.15 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHH-HhcCChhhhhhhccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHH
Q 008827 91 IQRDASLESIAT-IFKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN 168 (552)
Q Consensus 91 ~v~~~al~~L~~-l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~ 168 (552)
+-+..|+.-|-. +|++.-.+|.+.. +..+..+++.+++ .+...+..|.+.|..+..+.+....+. .+-++..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f----~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Ds--tE~ai~K 375 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHF----AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDS--TEIAICK 375 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHH----HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhch--HHHHHHH
Confidence 445566664544 4555445554432 4567778887776 899999999999999998764322211 1234444
Q ss_pred HHHhcCCC-CchhchHHH-HHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC--ChhHHHH
Q 008827 169 LLELLDDP-GRVGDEASF-AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK--LECCRSR 244 (552)
Q Consensus 169 Lv~ll~~~-~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~ 244 (552)
+++.-++. +.+...|.. ++.-+++..|.. .|..++.++.+. +......++..+..++.. .++.-..
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~l 445 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNL 445 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence 44444433 445555544 444555555542 244455555554 233455566666666642 1122111
Q ss_pred HHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827 245 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 278 (552)
Q Consensus 245 ~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~ 278 (552)
-..+.|.+++.-.+.+..||+.++.||..+-.
T Consensus 446 --l~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 446 --LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred --hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 13588999999999999999999999988754
No 201
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.80 E-value=0.4 Score=37.00 Aligned_cols=72 Identities=19% Similarity=0.130 Sum_probs=57.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
....+..+.++.+.+|..++..|..+....+ ....-...++..+...++++|+.|-.+|+..|..++...|+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4556677888889999999999999987544 12222346677888999999999999999999999977664
No 202
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.68 E-value=0.67 Score=43.14 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh
Q 008827 265 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 343 (552)
Q Consensus 265 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll 343 (552)
....|...|.-++--++..+.. |..+..+..++.+|+ ...+.++.++..+|..+..+.+.+...+-+.+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~l-F~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKL-FHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHH-HhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3455667777777665665655 888999999999995 56799999999999999888888888888999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHhc
Q 008827 344 KSM--DSTIRLNALRALRNLI 362 (552)
Q Consensus 344 ~~~--~~~v~~~a~~aL~~l~ 362 (552)
++. +.++|...+..|.-..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 875 5778888887776443
No 203
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.45 E-value=1 Score=40.24 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=80.0
Q ss_pred CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc--------------CchHHHHHHHhcc-----cCchhHHHHHHHHHHh
Q 008827 388 DPEPSVQEQALALVRNLVDGRINSVEYIFAED--------------GIILDAVGRQLRI-----ASKAEIEIQGMYVLGN 448 (552)
Q Consensus 388 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--------------~~~~~~l~~~L~~-----~~~~~v~~~a~~~L~~ 448 (552)
+++...-..++.+|.|++..+. ....++... +..+..|+..+.. .+...-....+.++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 3444455566778888876532 222232221 1245555555532 1334456778999999
Q ss_pred hcCCChhhHHHHHHHhhHhhhhhh--HHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHH---CCcHHHHH
Q 008827 449 VATGKESHKEAVMDQLLLRAENKA--QSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD---AGIVSHVK 523 (552)
Q Consensus 449 la~~~~~~~~~i~~~~~~~~~~~~--v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~---~g~~~~L~ 523 (552)
++.- +..|+.+++. ..+. +..|+.++++.+..-|..++.+|.|+++ ....+ ..|.. .++++.|.
T Consensus 85 lS~~-~~gR~~~l~~-----~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF----d~~~H-~~LL~~~~~~iLp~LL 153 (192)
T PF04063_consen 85 LSQL-PEGRQFFLDP-----QRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF----DTDSH-EWLLSDDEVDILPYLL 153 (192)
T ss_pred hcCC-HHHHHHHhCc-----hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc----cHhHH-HHhcCchhhhhHHHHH
Confidence 9974 4578877762 2344 7888999999988888999999999998 22223 34433 46677666
Q ss_pred hhhc
Q 008827 524 NMVN 527 (552)
Q Consensus 524 ~ll~ 527 (552)
--+.
T Consensus 154 lPLa 157 (192)
T PF04063_consen 154 LPLA 157 (192)
T ss_pred hhcc
Confidence 6443
No 204
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.41 E-value=1.5 Score=38.20 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=76.2
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc--CchHHHHHhhcC--CHHHHHHHHHHHHHHh---cCCh
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA--GVLKRLTSLLGG--SLIQRDASLESIATIF---KNNP 108 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~--g~i~~L~~lL~~--~~~v~~~al~~L~~l~---~~~~ 108 (552)
..+..+.++|+++++..+..++..+.-.+.... .+.+.+. -|+..++.+|++ +..+.+.++.+|..|. .+.+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345678889999899999999988888875533 2334343 388999999986 3477888888888775 4455
Q ss_pred hhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827 109 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154 (552)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~ 154 (552)
+..+++....-...+..++.++++ ......+..+|..+....+.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 555555422112333444445554 56666777777777665543
No 205
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.34 E-value=6.3 Score=36.07 Aligned_cols=139 Identities=15% Similarity=0.176 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhhCcHHHHH
Q 008827 267 SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-----DTSTAVQVAALGAISNIVVDFT-TRRSTFIRLGGVKLLV 340 (552)
Q Consensus 267 ~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~~~~-~~~~~~~~~g~i~~L~ 340 (552)
..+...+..++.+ +..+.. |.++.+--.+..+|. .+.+-+|..+.+.|+.++...+ .....+...+++|..+
T Consensus 97 cnaL~LlQcvASH-pdTr~~-FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRA-FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHhcC-cchHHH-HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 4555556666666 666766 888887777888875 3567899999999999986443 3455778899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcccCCh-H------hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 341 QLSKSMDSTIRLNALRALRNLIFLAED-K------CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 341 ~ll~~~~~~v~~~a~~aL~~l~~~~~~-~------~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
+.+..+++..+..|...+..+..++.- . .|-..+....-..+.++.+.+++.+...++++..+++.+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999887653221 1 122222222234455667788999999999999999865
No 206
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.34 E-value=0.68 Score=41.31 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccchh---------------hhccCcHHHHHHhhcC------CCHHHHHHHHHHHH
Q 008827 259 AHDSSDVRSAACMCLRSVSRSIKNLSAGS---------------FMNETIVIPLVRLLDD------TSTAVQVAALGAIS 317 (552)
Q Consensus 259 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~---------------~~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~ 317 (552)
.++....-..+|+.|.|+++..+ .+... ......+..|+.++.. ...+-....+..+.
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 34445556677888888887632 22210 1123467778877643 23455677888999
Q ss_pred HhhcCCchhHHHHHhh--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh---hcHHHHHhhhc
Q 008827 318 NIVVDFTTRRSTFIRL--GG--VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME---LTASLLASLIC 387 (552)
Q Consensus 318 nl~~~~~~~~~~~~~~--g~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~---~~~~~l~~ll~ 387 (552)
|++. .+..|+.+.+. +. +..|+.++.+.+..-|.-++.++.|+|... +....++.. ..++.|+--+.
T Consensus 84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcCchhhhhHHHHHhhcc
Confidence 9995 56778888764 34 788889999887777778899999999854 345555542 34444444443
No 207
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=13 Score=39.59 Aligned_cols=277 Identities=13% Similarity=0.109 Sum_probs=154.2
Q ss_pred CcHHHHHHhhhcCC------CChhhHHHHHHHHHHhhc--CChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827 205 NGVDKLYNHLQKGS------LHPRRFEGILLALADMCS--KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 205 ~~i~~L~~~L~~~~------~~~~~~~~a~~aL~~l~~--~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l 276 (552)
|.++.+.++|.... ..+...+.|++.++++.. ..+..-..+.+.-++++++..+++..--++..+|..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 66788888774321 124456788888888765 2233334455556788888999999999999999999988
Q ss_pred hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh--hCcHHHHHHhhcCCCHHHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNA 354 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a 354 (552)
+...+.. -......+.....+++.+-.++..|+-|+.-+..+.. .-..+.. -+.++.|+.+...-+.+.-...
T Consensus 488 eeDfkd~----~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 488 EEDFKDN----GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHhcccc----hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 5542221 1223344556667778888999999999988876542 2222222 1445555555554443433333
Q ss_pred HHH-HHHhcccCChHhHHHHHHh---hcHHHHHhhhcCC------ChhHHHHHHHHHHHhhcC------CcchHHHHHhh
Q 008827 355 LRA-LRNLIFLAEDKCKEEIFME---LTASLLASLICDP------EPSVQEQALALVRNLVDG------RINSVEYIFAE 418 (552)
Q Consensus 355 ~~a-L~~l~~~~~~~~~~~i~~~---~~~~~l~~ll~~~------~~~v~~~a~~~L~~l~~~------~~~~~~~i~~~ 418 (552)
... +..++..-+| ...++... ..+.....++..+ ..+-|.+|.++|+.+... .++..+++...
T Consensus 563 Me~fVe~fseELsp-fa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s 641 (970)
T COG5656 563 MESFVEYFSEELSP-FAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS 641 (970)
T ss_pred HHHHHHHhHHhhch-hHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 322 2233322222 11222211 1122233334322 135667778888776532 22222222221
Q ss_pred cCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh-hHHHHHHHHHHh
Q 008827 419 DGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS-RLRTAAVWAVLN 497 (552)
Q Consensus 419 ~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~-~~~~~a~~~l~~ 497 (552)
..+..--.|.+ .....-..|+-.+-+.+-... ....+ . -|+...+.+++.+... ..-.+++-++.|
T Consensus 642 ---lypvi~Filkn-~i~dfy~Ea~dildg~tf~sk-eI~pi----m----wgi~Ell~~~l~~~~t~~y~ee~~~al~n 708 (970)
T COG5656 642 ---LYPVISFILKN-EISDFYQEALDILDGYTFMSK-EIEPI----M----WGIFELLLNLLIDEITAVYSEEVADALDN 708 (970)
T ss_pred ---HHHHHHHHHhh-hHHHHHHHHHHHHhhhhHHHH-Hhhhh----h----hHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 23444334444 445566667776665543111 12222 2 3666777788887764 677888889999
Q ss_pred hcC
Q 008827 498 LTC 500 (552)
Q Consensus 498 l~~ 500 (552)
+..
T Consensus 709 fit 711 (970)
T COG5656 709 FIT 711 (970)
T ss_pred HHH
Confidence 874
No 208
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.05 E-value=7.5 Score=36.11 Aligned_cols=197 Identities=13% Similarity=0.035 Sum_probs=114.2
Q ss_pred HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcH
Q 008827 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV 207 (552)
Q Consensus 129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 207 (552)
+.+..+++.+......|..++.++. ....-++..|..+.+.+ .+.+..+.+.+..+-..++... +.+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~------~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L 76 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN------VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFL 76 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc------cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHH
Confidence 6678899999999999999988651 12234666677766643 3344455666666665443211 223
Q ss_pred HHHHHh--hh------cCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc-CCCCHHHHHHHHHHHHHhhc
Q 008827 208 DKLYNH--LQ------KGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSR 278 (552)
Q Consensus 208 ~~L~~~--L~------~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L-~~~~~~v~~~a~~~L~~ls~ 278 (552)
..++.. ++ +.+...+..-....++..+|...++. -..+++.+..++ ++.++.++..+..++..++.
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 333332 11 11112233344456777888766552 223688899999 78889999999999999985
Q ss_pred ccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch-hHHHHHhhCcHHHHHHhhcCCCH
Q 008827 279 SIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLVQLSKSMDS 348 (552)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~ 348 (552)
. +.. .-......+..-++ +..|.+...-+.-+..+....-+ .........++..+.++..+.+.
T Consensus 152 ~-~vv-----d~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 152 A-EVV-----DFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred H-hhc-----cHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 4 111 11234444555454 44667766555544443332211 11233445677777777776553
No 209
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=92.99 E-value=3.2 Score=43.71 Aligned_cols=190 Identities=13% Similarity=0.135 Sum_probs=124.5
Q ss_pred HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc
Q 008827 202 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK 281 (552)
Q Consensus 202 ~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~ 281 (552)
++.+.+|.|++++...+ ..+|..-+.-+-.. -+...+.+++..++|.+...+.+.++.+|..++.++..++....
T Consensus 327 yq~~i~p~l~kLF~~~D--r~iR~~LL~~i~~~---i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPD--RQIRLLLLQYIEKY---IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred cccchhhhHHHHhcCcc--hHHHHHHHHhHHHH---hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 44567899999888764 44555444333333 23445567788899999999999999999999999988875422
Q ss_pred cccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827 282 NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361 (552)
Q Consensus 282 ~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 361 (552)
. . ......+..+-++-.|++..+|...+-+|+.++....... .+.-.+..+.+-++++-..-|..+++++...
T Consensus 402 ~---~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 402 K---R-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred h---h-hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 1 1 1222334444444447788999999999988876433221 2223445566777887777889998888766
Q ss_pred cccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 362 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
...-+ ..-+...+++.+.-+.-+++..++..+..+++-....
T Consensus 475 ~~~~~----~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 475 QEYFD----QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred ccccc----hhhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 44322 1122334566677777788888888887777665433
No 210
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.79 E-value=4.6 Score=43.77 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=106.7
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC----CCHHHHHHHHHHHHHhhccccc
Q 008827 207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH----DSSDVRSAACMCLRSVSRSIKN 282 (552)
Q Consensus 207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~----~~~~v~~~a~~~L~~ls~~~~~ 282 (552)
+..+.+++........ .+...|..+....... ....+..+..+++. .++.++..+..+++.+.+..-.
T Consensus 397 v~~i~~~I~~~~~~~~---ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDD---EAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHTT-S-HH---HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHH---HHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 5566676666532222 2333444443321011 11245556666653 4567888888888877543211
Q ss_pred c---------cchhhhccCcHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC---
Q 008827 283 L---------SAGSFMNETIVIPLVRLLD----DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--- 346 (552)
Q Consensus 283 ~---------~~~~~~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--- 346 (552)
. +.. .....+++.+...+. ..+.+-+..++.||+|+-. + ..++.+..++.+.
T Consensus 469 ~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 469 NSDSAEFCDPCSR-CIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp T-----------S-S--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S
T ss_pred cccccccccccch-hhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcccc
Confidence 1 111 244566777777665 4577888999999999853 1 4677888887776
Q ss_pred CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC--CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 008827 347 DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD 424 (552)
Q Consensus 347 ~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~ 424 (552)
+..+|..|+++|..++... | ..+.+.++.++.+ .+++++..|..+|-. .+|.. . .+.
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~-~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~--~-------~l~ 595 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHC-P--------EKVREILLPIFMNTTEDPEVRIAAYLILMR---CNPSP--S-------VLQ 595 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT--H--------HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H--H-------HHH
T ss_pred chHHHHHHHHHHHHHhhcC-c--------HHHHHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH--H-------HHH
Confidence 6789999999999885532 2 1234556666653 456788777655433 22211 0 455
Q ss_pred HHHHHhcccCchhHHHHHHH
Q 008827 425 AVGRQLRIASKAEIEIQGMY 444 (552)
Q Consensus 425 ~l~~~L~~~~~~~v~~~a~~ 444 (552)
.+...+..+++.+|......
T Consensus 596 ~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 596 RIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHH
Confidence 66666666566666554443
No 211
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.65 E-value=9.6 Score=36.30 Aligned_cols=204 Identities=13% Similarity=0.164 Sum_probs=132.3
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH----HHHH-hcccHHHHHHhcCCCCHHHHHHHHHHH
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR----SRCL-SLQVLKLVVDALAHDSSDVRSAACMCL 273 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~----~~~~-~~~~l~~lv~~L~~~~~~v~~~a~~~L 273 (552)
..+.++|.++.++..+.... .+-+..++....++-...-..| ..+. ....+..++..-.. .+++-.++-..+
T Consensus 73 qef~~~~~l~~lI~~l~~l~--fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLE--FESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhccc--chhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHH
Confidence 44677888899998887763 4445555555555543221111 1111 12355555555222 355555554555
Q ss_pred HHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc----HHHHHHhhcCCCHH
Q 008827 274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG----VKLLVQLSKSMDST 349 (552)
Q Consensus 274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~----i~~L~~ll~~~~~~ 349 (552)
+...+. +.+... +..+.-......+++.+.=++...|..+...+..........++..+- .+.--.++.+++--
T Consensus 150 rEcirh-e~Laki-iL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 150 RECIRH-EFLAKI-ILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHhh-HHHHHH-HHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence 555555 555544 667777888888888887788888888888876654433333443332 33456788999999
Q ss_pred HHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 350 IRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 350 v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
++..+..+++.+..+.++ ...+.+.+...+..+..+|++++..+|-+|.....-...+
T Consensus 228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 999999999998664432 2334444455678889999999999999999888777655
No 212
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.60 E-value=0.88 Score=33.27 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC
Q 008827 439 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG 517 (552)
Q Consensus 439 ~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g 517 (552)
.+.++|+++++++... ....+ + +.++++.++++-.+ +...+|-.|.++|+-++ .+.+..+.|.+.|
T Consensus 4 lKaaLWaighIgss~~-G~~lL-~------~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis-----~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-GIQLL-D------ESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS-----STEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChH-HHHHH-h------hcCHHHHHHHHHHhCCccchHHHHHHHHHHHh-----CCHHHHHHHHHcC
Confidence 5689999999987443 34433 3 27899999998875 56789999999999888 4677777776655
No 213
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.41 E-value=9.3 Score=35.58 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=112.8
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHh-cccHHHHHH-------hcCCCC--HHHH---HHHHHHHHHhhcccccccchh
Q 008827 221 PRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVD-------ALAHDS--SDVR---SAACMCLRSVSRSIKNLSAGS 287 (552)
Q Consensus 221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~lv~-------~L~~~~--~~v~---~~a~~~L~~ls~~~~~~~~~~ 287 (552)
++.|+.|+.-|+.--..-++..-.+.. .|.+..+++ .+..++ +..- ..+...+..++.+ +..|..
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~- 86 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP- 86 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH-
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH-
Confidence 567787777666543333444333333 354544433 233332 2222 3344445555665 666766
Q ss_pred hhccCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcC-CchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827 288 FMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 361 (552)
|.++.+.-.|.-+|+.. .+-+|-...+.++.++.. .++....+.+.+.+|..++.++.+++-.+..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88888888888888633 357888999999999863 344566788899999999999999999999999998887
Q ss_pred cccCCh-------HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 362 IFLAED-------KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 362 ~~~~~~-------~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
..++.- ..|-.-+....-..+.++..++++.+....+++...++.+.
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 542110 01111111111222334556788888888888888888764
No 214
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.25 E-value=0.77 Score=47.89 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=97.1
Q ss_pred CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhh
Q 008827 389 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 468 (552)
Q Consensus 389 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~ 468 (552)
.|+.+|..|--.|..+-+-.. ++..+ -+|++...+..+++|.++.++.-.++.++.......+..
T Consensus 908 sd~~lq~aA~l~L~klMClS~---~fc~e----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-------- 972 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSF---EFCSE----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-------- 972 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhH---HHHHH----HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH--------
Confidence 678888888877777654321 22222 378888888877999999999999999887443222222
Q ss_pred hhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827 469 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 469 ~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~ 548 (552)
-..|.+-|.+.+..||+.|..++.++... | .+.-.|-++.+..+++|++....+-|..-+..|+.=+
T Consensus 973 ----t~yLyrrL~De~~~V~rtclmti~fLila---g------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 973 ----THYLYRRLGDEDADVRRTCLMTIHFLILA---G------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred ----HHHHHHHhcchhhHHHHHHHHHHHHHHHc---c------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 25678888999999999999999999851 2 2334577788888999888888888877777766544
Q ss_pred C
Q 008827 549 D 549 (552)
Q Consensus 549 ~ 549 (552)
+
T Consensus 1040 N 1040 (1128)
T COG5098 1040 N 1040 (1128)
T ss_pred c
Confidence 3
No 215
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.03 E-value=12 Score=36.87 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=110.3
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhc-CCcchHHHHHhhcCchHHHHHHHhccc----Cc--------hhHHHHHHH-
Q 008827 379 ASLLASLICDPEPSVQEQALALVRNLVD-GRINSVEYIFAEDGIILDAVGRQLRIA----SK--------AEIEIQGMY- 444 (552)
Q Consensus 379 ~~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~~~~~~~~l~~~L~~~----~~--------~~v~~~a~~- 444 (552)
+..+.+.|.+....+...++.+|..+.. ........+++.-+.-.+.+.+++... .+ +.+|...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888888889999999999999988 655666777665443455666666321 01 267776555
Q ss_pred HHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh
Q 008827 445 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN 524 (552)
Q Consensus 445 ~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ 524 (552)
+|..+..+++..+..++++ .+.+..+.+.|..++.++......++..-...+..-.+.....+.....+..|..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~------~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQ------KKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHccCCHHHHHHHHHc------CchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 5666666777778888874 6778889999988888888888888876554323233444555666678888999
Q ss_pred hhcCCCc----cHHHHHHHHHHHH
Q 008827 525 MVNDPCL----DVKLRVKTALEQF 544 (552)
Q Consensus 525 ll~~~~~----~v~~~a~~al~~~ 544 (552)
+.....+ .+++.|..-|..+
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~l 235 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLAL 235 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHH
Confidence 7654444 5666665555443
No 216
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.70 E-value=11 Score=40.87 Aligned_cols=170 Identities=19% Similarity=0.175 Sum_probs=100.2
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCch
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD----TSTAVQVAALGAISNIVVDFTT 325 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~ 325 (552)
.+..+.+++......-.. +...+..+...... -....+..+..+++. .++.++..|.-+++.++.....
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~------Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRR------PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCC------CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 466677777664432222 34445555443111 123456667777764 3677888888888877653222
Q ss_pred hH---------HHHHhhCcHHHHHHhhc----CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCC---
Q 008827 326 RR---------STFIRLGGVKLLVQLSK----SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP--- 389 (552)
Q Consensus 326 ~~---------~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~--- 389 (552)
.. ........++.+...+. ..+...+..++.||+|+... ..++.+..++.+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G------------GGHHHHHTTSTTSS-S
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc------------hhhHHHHhHhhhcccc
Confidence 11 11122345555555544 45778889999999999431 2577888888765
Q ss_pred ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHh
Q 008827 390 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGN 448 (552)
Q Consensus 390 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~ 448 (552)
+..++..|+++|+.+....++. +.+.+.+++.+ ..++++|..|..+|..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~----------v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEK----------VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHH----------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHH----------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 6789999999999997776543 44555565554 3567899999888775
No 217
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.36 E-value=19 Score=38.59 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=86.1
Q ss_pred CcHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCchhHH---HHHhhCcHHHHHHhhc----CCCHHHHHHHHHHHHH
Q 008827 292 TIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRS---TFIRLGGVKLLVQLSK----SMDSTIRLNALRALRN 360 (552)
Q Consensus 292 ~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~---~~~~~g~i~~L~~ll~----~~~~~v~~~a~~aL~~ 360 (552)
..+..+..+++++ ++.++..|.-+++.++........ ..+....++.+.+.+. ..+...+...+.+|+|
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 4567788888653 567888888888877642111110 1112345666665554 3456667889999999
Q ss_pred hcccCChHhHHHHHHhhcHHHHHhhhc---CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCch
Q 008827 361 LIFLAEDKCKEEIFMELTASLLASLIC---DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKA 436 (552)
Q Consensus 361 l~~~~~~~~~~~i~~~~~~~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~ 436 (552)
+.... .++.+..++. ..+..++..|+++|++++...++. +-+.+.+++.+ ..++
T Consensus 473 ~g~~~------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~----------v~~~l~~i~~n~~e~~ 530 (574)
T smart00638 473 AGHPS------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK----------VQEVLLPIYLNRAEPP 530 (574)
T ss_pred cCChh------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH----------HHHHHHHHHcCCCCCh
Confidence 95421 2444444454 345679999999999998766654 33444555544 3577
Q ss_pred hHHHHHHHHHHhh
Q 008827 437 EIEIQGMYVLGNV 449 (552)
Q Consensus 437 ~v~~~a~~~L~~l 449 (552)
++|..|+.+|...
T Consensus 531 EvRiaA~~~lm~t 543 (574)
T smart00638 531 EVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHHhc
Confidence 8999998888753
No 218
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.35 E-value=17 Score=36.37 Aligned_cols=95 Identities=21% Similarity=0.121 Sum_probs=61.3
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChhH------------HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc
Q 008827 216 KGSLHPRRFEGILLALADMCSKLECC------------RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL 283 (552)
Q Consensus 216 ~~~~~~~~~~~a~~aL~~l~~~~~~~------------~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~ 283 (552)
++..+++.+..|+..++.++...... -..+....++|-|. -=.+..+-++..|++.+..+....+.
T Consensus 264 ~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~- 341 (370)
T PF08506_consen 264 NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK- 341 (370)
T ss_dssp -TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-
T ss_pred CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-
Confidence 34456788899999999998754221 12333344555554 11245677899999999888665322
Q ss_pred cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI 316 (552)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 316 (552)
. .-.+++|.++..|.+++.-|...|+.++
T Consensus 342 --~--~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 --E--QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp --H--HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred --H--HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2 3347899999999999999999988775
No 219
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.04 E-value=5.2 Score=43.96 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=115.7
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH-hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHH
Q 008827 220 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLV 298 (552)
Q Consensus 220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv 298 (552)
++.-|..|+..+........ ........|.+-.+.. .+.+.+..+...++.+|..++......... ...++.|.++
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~~~v~p~ll 342 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YAKNVFPSLL 342 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HHHhhcchHH
Confidence 35567777777776664322 0001111223333333 334778899999999999998765444333 4467888899
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhc
Q 008827 299 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 378 (552)
Q Consensus 299 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~ 378 (552)
.-+.+....++..+..++-.+...+.. ....+.+...+++.++.++......+.......++.+-..-.-...
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l 415 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL 415 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence 999888888888887777655542221 2456778889999999999998777776655443211111112346
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 379 ASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 379 ~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
.+.++....|.+.+|+..+..++.-+.
T Consensus 416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 416 VPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 788888899999999999988877664
No 220
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=1.3 Score=41.91 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=94.6
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 329 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 329 (552)
.+...+..|.+++|.....+...++.|+.-++..... .-+.++..+++-+++....|-..|+.+++.+...... .
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~--~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---~ 163 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNP--MLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---S 163 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3555677888889999988888888887654432222 2245667777788888889999999999988764433 2
Q ss_pred HHhhCcHHHHH-HhhcC---CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHh
Q 008827 330 FIRLGGVKLLV-QLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 404 (552)
Q Consensus 330 ~~~~g~i~~L~-~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l 404 (552)
+.+ .+..++ .|++. ++.-+++.|-.+|..++.+..| ...++.|...+.+.++.++..++..+.+.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 332 233333 33333 4566899999999999886654 22455566667778888887776554444
No 221
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.89 E-value=2.5 Score=43.15 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=112.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCCchh
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS----TAVQVAALGAISNIVVDFTTR 326 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~----~~v~~~a~~aL~nl~~~~~~~ 326 (552)
...+.+.+.+++..-+..+.+-+..++.... .... |+...++..|.++..+.+ .++......+++.+..... .
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~e-fi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEE-FIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHH-HHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 4556788888888888889999999987733 3334 778888999999998653 4777788888877764321 1
Q ss_pred HHHHHhhCcHHHHHHhhc--CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHh
Q 008827 327 RSTFIRLGGVKLLVQLSK--SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 404 (552)
Q Consensus 327 ~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l 404 (552)
.........+.....+.. ..+..+-..|+..|-++..++ +..+..+.++-.++.++..+...+..++.+|+..+..+
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS-DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC-hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 111222233444444432 234556777888888887744 45788888888999999999999999999999999998
Q ss_pred hcCCcc
Q 008827 405 VDGRIN 410 (552)
Q Consensus 405 ~~~~~~ 410 (552)
....++
T Consensus 241 ~~~a~~ 246 (713)
T KOG2999|consen 241 FRKAPD 246 (713)
T ss_pred HhhCCh
Confidence 876554
No 222
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.78 E-value=19 Score=35.99 Aligned_cols=151 Identities=12% Similarity=0.123 Sum_probs=88.0
Q ss_pred hHHHHHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc-----ccCchhHHHHH
Q 008827 369 CKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR-----IASKAEIEIQG 442 (552)
Q Consensus 369 ~~~~i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~-----~~~~~~v~~~a 442 (552)
.-.++.+..-.+.+-+-+...| ..-+..|..+++.++...+.....++ ...+..+|+ .+.++.-+..|
T Consensus 202 ~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~------~~~i~~~l~~y~~~~~~~w~~KD~A 275 (370)
T PF08506_consen 202 EDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL------MQYIQQLLQQYASNPSNNWRSKDGA 275 (370)
T ss_dssp HHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-TTT-HHHHHHH
T ss_pred HHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHhhCCcccHHHHHHH
Confidence 4456666666677766666444 44777888999999865333222222 233333443 23567888899
Q ss_pred HHHHHhhcCCChh------------hHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHH
Q 008827 443 MYVLGNVATGKES------------HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL 510 (552)
Q Consensus 443 ~~~L~~la~~~~~------------~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 510 (552)
+..++.++..... ....++. .-++|-|. -=.+..+-+|..|++.+..+-. .-+.+.
T Consensus 276 l~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~-------~~v~peL~-~~~~~~piLka~aik~~~~Fr~---~l~~~~- 343 (370)
T PF08506_consen 276 LYLIGALASKGSTTKSGVTQTNELVDVVDFFS-------QHVLPELQ-PDVNSHPILKADAIKFLYTFRN---QLPKEQ- 343 (370)
T ss_dssp HHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH-------HHTCHHHH--SS-S-HHHHHHHHHHHHHHGG---GS-HHH-
T ss_pred HHHHHHHHhhhccccCCcccccccccHHHHHH-------HHhHHHhc-ccCCCCcchHHHHHHHHHHHHh---hCCHHH-
Confidence 9999999874421 1122222 22333332 1113567799999999998873 223322
Q ss_pred HHHHHCCcHHHHHhhhcCCCccHHHHHHHHH
Q 008827 511 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541 (552)
Q Consensus 511 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al 541 (552)
-.++++.+.+.+.+++.-|+-.|+.|+
T Consensus 344 ----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp ----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 234689999999988888888877764
No 223
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.78 E-value=20 Score=36.07 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=76.4
Q ss_pred hhc-cCcHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-C---CCHHHHHHHHHHHH
Q 008827 288 FMN-ETIVIPLVRLLDDT---STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-S---MDSTIRLNALRALR 359 (552)
Q Consensus 288 ~~~-~~~i~~Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~---~~~~v~~~a~~aL~ 359 (552)
+.+ ......|-.++++. .+.+...|+..+..+..+.+..-..+.+.|.++.+++.+. . ++.++-...-.+++
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 455 45566677777765 5789999999999999888888888999999999998877 4 34555555556777
Q ss_pred HhcccCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827 360 NLIFLAEDKCKEEIFMELTASLLASLICDPE 390 (552)
Q Consensus 360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~ 390 (552)
.+|-+ ..-.+.+.+...++.+++++.+++
T Consensus 181 AicLN--~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 181 AICLN--NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHhcC--HHHHHHHHhcChHHHHHHHhCCHH
Confidence 77763 346677778888999999887654
No 224
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.67 E-value=8.4 Score=34.04 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhccc-ccccch---hh------hccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh-
Q 008827 265 VRSAACMCLRSVSRSI-KNLSAG---SF------MNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR- 332 (552)
Q Consensus 265 v~~~a~~~L~~ls~~~-~~~~~~---~~------~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~- 332 (552)
+|..|..+|..+++.. +..-.. .+ ...+.-+.|+. +++|+++.+|..|+.++..+..+...+-...-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 6778888888887662 111000 01 12334445555 557999999999999999998775432211110
Q ss_pred ------------------hCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCChH-hHHHHHHhhcHHHHHhhhcCCChh
Q 008827 333 ------------------LGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDK-CKEEIFMELTASLLASLICDPEPS 392 (552)
Q Consensus 333 ------------------~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~-~~~~i~~~~~~~~l~~ll~~~~~~ 392 (552)
...-..|+..++.+ +..+....++++..+....+-+ .+..++. ..+..+..++.+.|++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCc
Confidence 01233445555554 5667778888888887654311 2222222 2456666777889999
Q ss_pred HHHHHHHHHHHhhcCC
Q 008827 393 VQEQALALVRNLVDGR 408 (552)
Q Consensus 393 v~~~a~~~L~~l~~~~ 408 (552)
++..++.+++-+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999988888876543
No 225
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.33 E-value=2.2 Score=38.02 Aligned_cols=80 Identities=18% Similarity=0.122 Sum_probs=57.7
Q ss_pred HHHHHHHhCcHHHHHHhhhcCC-------CChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCCCCHHHHHH
Q 008827 197 MQKLAFEVNGVDKLYNHLQKGS-------LHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSA 268 (552)
Q Consensus 197 ~~~~~~~~~~i~~L~~~L~~~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~~~~~v~~~ 268 (552)
--+.+++.||+..|++.|..-. .+......++++|..+.... ..+..+. ..+++..+...|.+++..+|..
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 3455778899998888775431 23456778899999988543 4444444 4679999999999999999999
Q ss_pred HHHHHHHhh
Q 008827 269 ACMCLRSVS 277 (552)
Q Consensus 269 a~~~L~~ls 277 (552)
++..|..++
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 226
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.23 E-value=1.4 Score=34.08 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=56.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccC
Q 008827 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA 365 (552)
Q Consensus 294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 365 (552)
....+..+.++.+.+|..+...|+++..... .......+++..+...++++++-+-.+|+.+|..++...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 4456677889999999999999999997655 112233567888889999999999999999999998744
No 227
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.07 E-value=17 Score=38.72 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=94.4
Q ss_pred HHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827 374 FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 453 (552)
Q Consensus 374 ~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~ 453 (552)
+.+.+++.|..-+++.+..+|+.++..+.++++.-+ -..+.+. +++.+..+--.+.+..++..++.+++-+...-
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~--ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQA--ILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHH--HHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 345577888888999999999999999998876532 1222222 66777665444578889999999999888321
Q ss_pred hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccH
Q 008827 454 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV 533 (552)
Q Consensus 454 ~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v 533 (552)
. +..+++ .+..+.+..+..++.+......+.-++....-+| +......++|.++.+...+...+
T Consensus 461 D--~~~v~d---------~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-----~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 461 D--KAAVLD---------ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-----VEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred H--HHHhHH---------HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-----eeeehhhhhhhhhhhhhcccccH
Confidence 1 333432 2456677777888888888888777777532222 33445567777777765545554
Q ss_pred HHH
Q 008827 534 KLR 536 (552)
Q Consensus 534 ~~~ 536 (552)
...
T Consensus 525 ~Qy 527 (700)
T KOG2137|consen 525 EQY 527 (700)
T ss_pred HHH
Confidence 444
No 228
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.03 E-value=33 Score=37.55 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=110.1
Q ss_pred HHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHHHHhhC-cHHHHHHhhcCCCH-
Q 008827 272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLG-GVKLLVQLSKSMDS- 348 (552)
Q Consensus 272 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~- 348 (552)
++++.+...+..|.. +.+.+++..+...++. .+.+++..+.+.+.|++...+.......... -...+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~-~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKE-FLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHH-HHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 888999888888888 8999999999999973 6778999999999999864432211111110 11233334444444
Q ss_pred HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH-HH
Q 008827 349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA-VG 427 (552)
Q Consensus 349 ~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~-l~ 427 (552)
+.-.++...|+.+...++. . .+....+ .+.+--..++...... .+..+.. . .+.. +.
T Consensus 573 ersY~~~siLa~ll~~~~~-~----~~~~~r~-----------~~~~~l~e~i~~~~~~---~~~~~~~-~--~f~~~~~ 630 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK-T----TECVFRN-----------SVNELLVEAISRWLTS---EIRVIND-R--SFFPRIL 630 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc-C----ccccchH-----------HHHHHHHHHhhccCcc---ceeehhh-h--hcchhHH
Confidence 6666777777777654331 0 0000000 1111111111111111 0100110 0 2233 55
Q ss_pred HHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-CChhHHHHHHHHH
Q 008827 428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAV 495 (552)
Q Consensus 428 ~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l 495 (552)
+++..+..+..+..|.|++.++....++....+.+ .++++.+.+.-.. ...+++..+...+
T Consensus 631 ~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 631 RILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-------SNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-------ccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 66666677889999999999999987776665654 5666665554322 2344555554443
No 229
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.87 E-value=19 Score=38.69 Aligned_cols=194 Identities=19% Similarity=0.228 Sum_probs=108.5
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHhhc-CChhHHHHHHhcccHHHHHHhcCCC----CHHHHHHHHHHHHHhhccc-
Q 008827 207 VDKLYNHLQKGSLHPRRFEGILLALADMCS-KLECCRSRCLSLQVLKLVVDALAHD----SSDVRSAACMCLRSVSRSI- 280 (552)
Q Consensus 207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~~l~~lv~~L~~~----~~~v~~~a~~~L~~ls~~~- 280 (552)
+..+.+.+......+......+..+..... -++ ..+..+.++++++ .+.++..+.-+++++.+..
T Consensus 359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~---------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTE---------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH---------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 556666676654333223333333333322 122 2466677777643 5567888888888776521
Q ss_pred ccc--cchhhhccCcHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc---CCCHHHH
Q 008827 281 KNL--SAGSFMNETIVIPLVRLLD----DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK---SMDSTIR 351 (552)
Q Consensus 281 ~~~--~~~~~~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~ 351 (552)
.+. +.. .....+++.+...|. ..+.+.+..+..+|+|+-.. ..++.+..++. ..+..+|
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 430 VNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFIR 497 (574)
T ss_pred cCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHHH
Confidence 110 101 223456777777664 34666778889999987642 23344444444 2357899
Q ss_pred HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHH
Q 008827 352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ 429 (552)
Q Consensus 352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~ 429 (552)
..|+++|..++...+. .+.+.++.+.. +.+++++..|..+|-. .+|.. . .+..+...
T Consensus 498 ~~Av~Alr~~a~~~p~---------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~---t~P~~-~--------~l~~ia~~ 556 (574)
T smart00638 498 LAAILALRNLAKRDPR---------KVQEVLLPIYLNRAEPPEVRMAAVLVLME---TKPSV-A--------LLQRIAEL 556 (574)
T ss_pred HHHHHHHHHHHHhCch---------HHHHHHHHHHcCCCCChHHHHHHHHHHHh---cCCCH-H--------HHHHHHHH
Confidence 9999999988753332 23345555554 4567788777655433 22321 0 45566666
Q ss_pred hcccCchhHHHHH
Q 008827 430 LRIASKAEIEIQG 442 (552)
Q Consensus 430 L~~~~~~~v~~~a 442 (552)
+..+++.+|....
T Consensus 557 l~~E~~~QV~sfv 569 (574)
T smart00638 557 LNKEPNLQVASFV 569 (574)
T ss_pred HhhcCcHHHHHHh
Confidence 6665555555443
No 230
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.81 E-value=14 Score=32.92 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=88.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcccC--ChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHH
Q 008827 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLA--EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 413 (552)
Q Consensus 336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 413 (552)
++.++++..+++..+|..|+..+.-+.... .| ...+|.++.|..|+++.++..|...+..+....+..+.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 466777888899999999999988775531 22 12578899999999999999999999999887766555
Q ss_pred HHHhhcC-chHHHHHHHhcccCchhH---HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC------
Q 008827 414 YIFAEDG-IILDAVGRQLRIASKAEI---EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN------ 483 (552)
Q Consensus 414 ~i~~~~~-~~~~~l~~~L~~~~~~~v---~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~------ 483 (552)
.-+.+|- ..+..- +.+..+..... ....+..+..+..++..+|..++. .|++.+...
T Consensus 82 ~~~~~gi~~af~~~-~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~------------~l~k~f~~~~~~~~~ 148 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQ-RRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK------------SLLKQFDFDLTKLSS 148 (187)
T ss_pred HHHHHHHHHHHHHH-HHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH------------HHHHHHHhhcccccc
Confidence 4444430 011111 11221111111 445555555666555566766663 334433321
Q ss_pred --ChhHHHHHHHHHHhhcC
Q 008827 484 --DSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 484 --~~~~~~~a~~~l~~l~~ 500 (552)
...-.....++.-|++.
T Consensus 149 ~~~~~~l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 149 ESSPSDLDFLLFLAENLAT 167 (187)
T ss_pred ccchhHHHHHHHHHHHHhc
Confidence 23344556667777774
No 231
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.36 E-value=9.9 Score=40.23 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=94.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh----HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchH
Q 008827 337 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC----KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV 412 (552)
Q Consensus 337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~----~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 412 (552)
|.|.+-|+..|..||.+|+..+-++---.+|+. .+.+++. -...+..+|+++-+.|+..|..-+.....--.+.+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 455666788899999999999988865444543 3333332 35678899999999999877654444432100000
Q ss_pred -HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHH
Q 008827 413 -EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA 491 (552)
Q Consensus 413 -~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a 491 (552)
..++.+ ++..+..-+......+|+......|..++..+. .-.+++ -++|++-..|+++...||.++
T Consensus 256 P~~i~~~---ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le--------~~Lpal~~~l~D~se~VRvA~ 322 (1005)
T KOG1949|consen 256 PPTILID---LLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLE--------QLLPALRYSLHDNSEKVRVAF 322 (1005)
T ss_pred CHHHHHH---HHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHH--------HHHHhcchhhhccchhHHHHH
Confidence 001100 223333333333556888888888888887543 334554 234677778888899999999
Q ss_pred HHHHHhhc
Q 008827 492 VWAVLNLT 499 (552)
Q Consensus 492 ~~~l~~l~ 499 (552)
.-.|..+-
T Consensus 323 vd~ll~ik 330 (1005)
T KOG1949|consen 323 VDMLLKIK 330 (1005)
T ss_pred HHHHHHHH
Confidence 98887765
No 232
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.33 E-value=39 Score=37.38 Aligned_cols=238 Identities=10% Similarity=0.138 Sum_probs=133.2
Q ss_pred hccCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc----CCC----HHHHHHHH
Q 008827 289 MNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK----SMD----STIRLNAL 355 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~v~~~a~ 355 (552)
.+.|++..++.++.+ .+.+........|...+ .-..+|+.+++.|+++.|++.+. .+. ..+-+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 455888888888863 24456666666665555 44678889999999999998764 333 56666666
Q ss_pred HHHHHhcccCChHhH---HHHH--------HhhcHHHHHhhhcC----CChhHHHHHHHHHHHhhcCCcchHHHHHhhcC
Q 008827 356 RALRNLIFLAEDKCK---EEIF--------MELTASLLASLICD----PEPSVQEQALALVRNLVDGRINSVEYIFAEDG 420 (552)
Q Consensus 356 ~aL~~l~~~~~~~~~---~~i~--------~~~~~~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 420 (552)
..+..+......+.. .... ....+..+++.+.+ .++.+....+++|.+|+.++++..+.+++
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--- 269 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--- 269 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH---
Confidence 666666442221100 0000 11125555555554 36889999999999999998876666544
Q ss_pred chHHHHHHHhcc-------cCchhHHHHHHH-HHHhhcCCC--hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh-----
Q 008827 421 IILDAVGRQLRI-------ASKAEIEIQGMY-VLGNVATGK--ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS----- 485 (552)
Q Consensus 421 ~~~~~l~~~L~~-------~~~~~v~~~a~~-~L~~la~~~--~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~----- 485 (552)
.+...++- .++..+...++. +..++-... ...++.+++ .|++...+++|...-+
T Consensus 270 ----~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-------~GIv~~a~~YL~~~~P~~~~~ 338 (802)
T PF13764_consen 270 ----HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-------SGIVQDAIDYLLKHFPSLKNT 338 (802)
T ss_pred ----HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-------hhHHHHHHHHHHHhCcccccC
Confidence 33333321 012222222222 222222211 245667776 7998888888865322
Q ss_pred ---hHH--------HHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC-CCccHHHHHHHHHHHHhh
Q 008827 486 ---RLR--------TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 486 ---~~~--------~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~al~~~~~ 546 (552)
+-+ ..+...|.-++. |... .+.+...+.++.+..|-+- +...+-..|...|..+.+
T Consensus 339 ~s~eWk~~l~~psLp~iL~lL~GLa~----gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 339 DSPEWKEFLSRPSLPYILRLLRGLAR----GHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCHHHHHHhcCCcHHHHHHHHHHHHh----cCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 111 224555556664 2222 3344567777666666432 234554455555544443
No 233
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.28 E-value=4.4 Score=41.76 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=74.2
Q ss_pred cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827 248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 327 (552)
Q Consensus 248 ~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 327 (552)
.|.+.++++.+.+++..||+..+..|+.++.....+-. ..-.|.+..|..-+-+..+.||..|+.+|+.+-....+-.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 47888899999999999999999999999887554332 2456777888888888899999999999998753222111
Q ss_pred HHHHhhCcHHHHHHhhcC-CCHHHHHHHHHH
Q 008827 328 STFIRLGGVKLLVQLSKS-MDSTIRLNALRA 357 (552)
Q Consensus 328 ~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~a 357 (552)
......|..+++. ++.+||..|+.-
T Consensus 168 -----n~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 168 -----NRIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred -----HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1233455555554 567788776543
No 234
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=50 Score=39.52 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=67.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHH
Q 008827 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEE 372 (552)
Q Consensus 294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~ 372 (552)
...++..+..+++..+..+..+++.++...+.. . .-++..+.++.-+++ .++..|..-.-+++.+-++...-...+
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 444566667789999999999999988654431 1 223556666666665 456666666667777654322100111
Q ss_pred HHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcC
Q 008827 373 IFMELTASLLASLICDPE-PSVQEQALALVRNLVDG 407 (552)
Q Consensus 373 i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~ 407 (552)
.. ...+..++.+.+++. |.||+.++.++.-+.+.
T Consensus 955 hl-~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 955 HL-NTSVSILLALATDSTSPVVQTWSLHALALILDS 989 (2067)
T ss_pred hc-ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence 11 123556777776654 58999888888777654
No 235
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.61 E-value=42 Score=36.83 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHhhcCCchhHHHHHhh--------CcHHHHHHhhcC----CCHHHHHHHHHHHHHhcccCChHhHHH
Q 008827 305 STAVQVAALGAISNIVVDFTTRRSTFIRL--------GGVKLLVQLSKS----MDSTIRLNALRALRNLIFLAEDKCKEE 372 (552)
Q Consensus 305 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~--------g~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~ 372 (552)
..++...|...|+.+..- ++.+..+.+. .++..++..... -+++++..|+..+.|+.+. +|+++..
T Consensus 622 R~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~-pp~~r~s 699 (1516)
T KOG1832|consen 622 RHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCP-PPTTRPS 699 (1516)
T ss_pred chHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecC-CCCcchh
Confidence 356777888888766643 3444344322 144444443332 2789999999999999873 4566654
Q ss_pred HHHhhc----HHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc----CchhHHHHHHH
Q 008827 373 IFMELT----ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA----SKAEIEIQGMY 444 (552)
Q Consensus 373 i~~~~~----~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~----~~~~v~~~a~~ 444 (552)
.+..-+ -+... +=..+.....++.+.-.++...+++ =+..|+++|+-- .-+.++.-||.
T Consensus 700 ~i~~v~S~~g~~r~~-l~~~~ks~~le~~l~~mw~~Vr~nd------------GIkiLl~Ll~~k~P~t~aD~IRalAc~ 766 (1516)
T KOG1832|consen 700 TIVAVGSQSGDRRIF-LGAGTKSAKLEQVLRQMWEAVRGND------------GIKILLKLLQYKNPPTTADCIRALACR 766 (1516)
T ss_pred hhhhccccCCCcccc-ccCCCchHHHHHHHHHHHHHHhcCc------------cHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 432211 01000 0012223455666666666665543 255566666531 12468899999
Q ss_pred HHHhhcCCChhhHHHHHH
Q 008827 445 VLGNVATGKESHKEAVMD 462 (552)
Q Consensus 445 ~L~~la~~~~~~~~~i~~ 462 (552)
+|.-++..++ ...|+.
T Consensus 767 ~L~GLaR~~t--VrQIlt 782 (1516)
T KOG1832|consen 767 VLLGLARDDT--VRQILT 782 (1516)
T ss_pred HHhccccCcH--HHHHHH
Confidence 9999998654 344554
No 236
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=88.48 E-value=34 Score=35.57 Aligned_cols=95 Identities=14% Similarity=0.188 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc--c---cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhH
Q 008827 392 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR--I---ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 466 (552)
Q Consensus 392 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~--~---~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~ 466 (552)
+....+-.+++||+.+... . ..+..+..+|. + .++..+...|...++.+..+....+..-+..
T Consensus 230 ~l~~~~w~~m~nL~~S~~g--~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~--- 297 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLG--H-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF--- 297 (464)
T ss_pred ccchhHHHHHHHHHcCccH--H-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc---
Confidence 5666777888888865421 1 14566667772 2 1345677789999998887663222222210
Q ss_pred hhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 467 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 467 ~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
...-+++.+...++.+++.+-.+....+.++.
T Consensus 298 -~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 298 -SPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred -cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 00126677788888777666666666665555
No 237
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=88.16 E-value=3.4 Score=36.77 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---C---C----CchhchHHHHHHHhhc
Q 008827 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---D---P----GRVGDEASFAFSSLIA 192 (552)
Q Consensus 123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---~---~----~~v~~~a~~~L~~l~~ 192 (552)
...++..+++..... .....|.-..+..+....+.|+..|++..|+++|. . . .....++..++..+..
T Consensus 68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 334555555544433 12222222233333345677888999999999985 1 1 1456778888888886
Q ss_pred CCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhh
Q 008827 193 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMC 235 (552)
Q Consensus 193 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~ 235 (552)
........+-..+.+..|+..|.++ ++.++..++..|+.+|
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~--~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSP--NIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TT--SHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 6666555455678899999988765 4889999999998887
No 238
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=87.57 E-value=12 Score=38.41 Aligned_cols=217 Identities=18% Similarity=0.142 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHhcCChhhhhhhccccCCccHH-HHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHH
Q 008827 91 IQRDASLESIATIFKNNPEVVSQFVGPDTGRTLS-CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL 169 (552)
Q Consensus 91 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~-~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~L 169 (552)
+.|..+..+||.++..-+... -..... .+...+++....-|..|+..+...+........... -....+.|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~-------~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~-~~~l~~~L 173 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESS-------LQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPP-PQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCcc-HHHHHHHH
Confidence 568889999999876532211 023344 477889999999999999999999886543222111 24577778
Q ss_pred HHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcH-----HHHHHhhhcCC---CChhhHHHHHHHHH----Hhhc
Q 008827 170 LELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV-----DKLYNHLQKGS---LHPRRFEGILLALA----DMCS 236 (552)
Q Consensus 170 v~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i-----~~L~~~L~~~~---~~~~~~~~a~~aL~----~l~~ 236 (552)
...|.++ +..-.+....+..+-.+....-..+.+.|.+ |.|-....... ++.--.+.|-.... .+..
T Consensus 174 ~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~ 253 (441)
T PF12054_consen 174 LEILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKK 253 (441)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence 8888733 2233444555555554444444445555552 22111111110 00001111111111 1111
Q ss_pred ---CChhH--HHHHHhc-ccHHHHHHhc----CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCC
Q 008827 237 ---KLECC--RSRCLSL-QVLKLVVDAL----AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTS 305 (552)
Q Consensus 237 ---~~~~~--~~~~~~~-~~l~~lv~~L----~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~ 305 (552)
..... .+.+-+. .-+..-++.. ..-+..|+.+.+.++..+..-.+. -..+|.+|+.-++ .++
T Consensus 254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K-------LnPiIrpLMdSIK~Een 326 (441)
T PF12054_consen 254 SLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK-------LNPIIRPLMDSIKREEN 326 (441)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-------ccHHHHHHHHHhhcccc
Confidence 00000 0111110 1111111211 223556777777777776443222 2467888888887 568
Q ss_pred HHHHHHHHHHHHHhhcC
Q 008827 306 TAVQVAALGAISNIVVD 322 (552)
Q Consensus 306 ~~v~~~a~~aL~nl~~~ 322 (552)
..+|..++.+|..|...
T Consensus 327 ~~LQ~rsA~slA~Li~~ 343 (441)
T PF12054_consen 327 ELLQQRSAESLARLIQL 343 (441)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887653
No 239
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.56 E-value=8.1 Score=33.66 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=76.5
Q ss_pred cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC---CCh
Q 008827 378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT---GKE 454 (552)
Q Consensus 378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~---~~~ 454 (552)
....+..++++.+++-+..++.++.-.+..++ -+.+.+.++.-+..+.+.|+....+.+.+.++.++..+.. +.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46678889999999999999988888876642 2233355444677888888885566788888887777654 555
Q ss_pred hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 455 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 455 ~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.....+.... -..+++.+++++++ ......+..++..+..
T Consensus 104 ~l~Rei~tp~----l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPN----LPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhcc----HHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 4333343321 24666777777775 4555666666666654
No 240
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=87.56 E-value=51 Score=36.55 Aligned_cols=182 Identities=14% Similarity=0.162 Sum_probs=107.5
Q ss_pred HHHHhCcHHHHHHhhhcCCC---ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC----CCC----HHHHHH
Q 008827 200 LAFEVNGVDKLYNHLQKGSL---HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA----HDS----SDVRSA 268 (552)
Q Consensus 200 ~~~~~~~i~~L~~~L~~~~~---~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~----~~~----~~v~~~ 268 (552)
.+.++||+..+++.+..... ........+..|...| +-+.+|+.+++.|+++.+++.+. .+. ..+-+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 35578999999998876431 1234445556666655 45789999999999999988774 333 455555
Q ss_pred HHHHHHHhhccccc--ccc-----hhhh----ccCcHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCchhHHHHHhh
Q 008827 269 ACMCLRSVSRSIKN--LSA-----GSFM----NETIVIPLVRLLDD----TSTAVQVAALGAISNIVVDFTTRRSTFIRL 333 (552)
Q Consensus 269 a~~~L~~ls~~~~~--~~~-----~~~~----~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~ 333 (552)
....+..+...... ... .... +...+..+++.+.+ .++.+....+..|.+|+.+.....+.+++.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 55555555322110 100 0000 22336666666654 368999999999999999877655544421
Q ss_pred CcHHHHHHhhc-----CCCHHHHHHHHHHHHHhcccC-----ChHhHHHHHHhhcHHHHHhhhc
Q 008827 334 GGVKLLVQLSK-----SMDSTIRLNALRALRNLIFLA-----EDKCKEEIFMELTASLLASLIC 387 (552)
Q Consensus 334 g~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~-----~~~~~~~i~~~~~~~~l~~ll~ 387 (552)
..+.+++-. .++..+. +..++.++.+- ....|+.+++.|++...++.|.
T Consensus 271 --F~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~ 329 (802)
T PF13764_consen 271 --FKPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL 329 (802)
T ss_pred --HHHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence 122222111 1122222 34444444322 1356889999998888777774
No 241
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.17 E-value=10 Score=36.02 Aligned_cols=108 Identities=13% Similarity=0.186 Sum_probs=75.3
Q ss_pred cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhH
Q 008827 378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK 457 (552)
Q Consensus 378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~ 457 (552)
.+...+..|.+.|+...-..+..++.++.-+++....-+++ ++-.+++-+.+ +...|-..|+.+++.+...-..+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~---vii~vvkslKN-lRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE---VIIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888999999999999999988777666555555 45566677777 777899999999998886433333
Q ss_pred HHHHHHhhHhhhhhhHHHHHHhhcC---CChhHHHHHHHHHHhhcC
Q 008827 458 EAVMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 458 ~~i~~~~~~~~~~~~v~~Lv~lL~~---~~~~~~~~a~~~l~~l~~ 500 (552)
+..++ ..+..+|.. ++.-+|..|-.+|..+..
T Consensus 165 ~~~ld-----------~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 165 DQELD-----------DLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred HHHHH-----------HHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 33221 233444443 345588888888888884
No 242
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.91 E-value=14 Score=39.07 Aligned_cols=146 Identities=17% Similarity=0.091 Sum_probs=91.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc----chhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHH
Q 008827 124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCY----LQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~----~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~ 198 (552)
+-+.+.++-.+..||.+|+..+.++.-..+.. ..|..+ ..-...|.++|.+ .+.||..|..-+.+..+. +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f- 251 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITSK---F- 251 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H-
Confidence 34567888899999999999999986533211 122222 4467788899984 588998887666655431 1
Q ss_pred HHHHHhCcHHHHHHhhhcC---CCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008827 199 KLAFEVNGVDKLYNHLQKG---SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRS 275 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~---~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ 275 (552)
..++-...+..++..+.+. +...++|-.....|-.+.. ++.... +. ..++|.+=..|.+.+..||-++...|..
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~-~l-e~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHP-LL-EQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccchh-HH-HHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 2222333344444433222 0124677777777777764 333211 11 1356667777778899999999998877
Q ss_pred hh
Q 008827 276 VS 277 (552)
Q Consensus 276 ls 277 (552)
+-
T Consensus 329 ik 330 (1005)
T KOG1949|consen 329 IK 330 (1005)
T ss_pred HH
Confidence 73
No 243
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.89 E-value=26 Score=32.52 Aligned_cols=203 Identities=12% Similarity=0.108 Sum_probs=114.3
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827 251 LKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 329 (552)
Q Consensus 251 l~~lv~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 329 (552)
+|.+.. .-+..+++++.....+|..++.+.. .. ..-++..+..+.+.++.+.+.-+...+..+-...+...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~-----~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VC-----VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cc-----hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence 344444 4457789999999999999988731 21 23455667777777777776777777777665433211
Q ss_pred HHhhCcHHHHHHh-----h---cCC--CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh-cCCChhHHHHHH
Q 008827 330 FIRLGGVKLLVQL-----S---KSM--DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQAL 398 (552)
Q Consensus 330 ~~~~g~i~~L~~l-----l---~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll-~~~~~~v~~~a~ 398 (552)
+.+..++.. . .+. ..+........+..+|... |++- ...++.+..++ .+.++.++..++
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~~g-----~~ll~~ls~~L~~~~~~~~~alal 143 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PDHG-----VDLLPLLSGCLNQSCDEVAQALAL 143 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hhhH-----HHHHHHHHHHHhccccHHHHHHHH
Confidence 233333333 1 111 2223333344666666633 3322 22456677778 788888999999
Q ss_pred HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhH-HHHHHHhhHhhhhhhHHHHH
Q 008827 399 ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK-EAVMDQLLLRAENKAQSCII 477 (552)
Q Consensus 399 ~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~-~~i~~~~~~~~~~~~v~~Lv 477 (552)
.++..++...- -.+.. ....+.+.|.....+.+...-+..+..+..+.-+.. ..... ..++..+-
T Consensus 144 e~l~~Lc~~~v---vd~~s----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~-------~~~l~~lW 209 (234)
T PF12530_consen 144 EALAPLCEAEV---VDFYS----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELK-------RQILQLLW 209 (234)
T ss_pred HHHHHHHHHhh---ccHHH----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHH-------HHHHHHHH
Confidence 99999995421 11111 345555666554556666654544444443322211 11111 45566666
Q ss_pred HhhcCCCh
Q 008827 478 KFLQSNDS 485 (552)
Q Consensus 478 ~lL~~~~~ 485 (552)
++..+.+.
T Consensus 210 ~~~~~~~~ 217 (234)
T PF12530_consen 210 EYTSSSDV 217 (234)
T ss_pred hhcccccc
Confidence 66666553
No 244
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.77 E-value=29 Score=32.86 Aligned_cols=210 Identities=14% Similarity=0.111 Sum_probs=120.1
Q ss_pred HHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---CCCchhchHHHHHHHhhcCCHHHHHHHHHh
Q 008827 128 EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---DPGRVGDEASFAFSSLIAEKEDMQKLAFEV 204 (552)
Q Consensus 128 ~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 204 (552)
.-+.++++.+|..|..+|......-+.. .....-+..|++++. ++...-..+..++..|..... +..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~----~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~------~~~ 75 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD----FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN------FSP 75 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh----hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC------CCh
Confidence 4568899999999999999877654321 223334566666654 222222233444444442211 011
Q ss_pred CcHHHHHHhhhcC----CCChhhHHHHHHHHHHhhcCChhHHHHHHhc--ccHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Q 008827 205 NGVDKLYNHLQKG----SLHPRRFEGILLALADMCSKLECCRSRCLSL--QVLKLVVDALA-HDSSDVRSAACMCLRSVS 277 (552)
Q Consensus 205 ~~i~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~--~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls 277 (552)
+....+++.+.+. ......|..+...+..+..+ .+..+... +.+..+++.+. ..+|+-...+...+..+.
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN---HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH---hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 1123333322221 12234677788888887643 33333333 47777888887 458888888888888776
Q ss_pred cccccccchhhhccCcHHHHHHhhcC-------C---CH--HHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC
Q 008827 278 RSIKNLSAGSFMNETIVIPLVRLLDD-------T---ST--AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS 345 (552)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~-------~---~~--~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~ 345 (552)
...+ -....+.+...+.. + || -.++.-..+|.+.....+. ...-++|.|++-|.+
T Consensus 153 ~~~~--------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s 219 (262)
T PF14500_consen 153 QEFD--------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDS 219 (262)
T ss_pred Hhcc--------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcC
Confidence 6532 13445666666531 1 22 2233333344433322222 223578999999999
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 008827 346 MDSTIRLNALRALRNLIF 363 (552)
Q Consensus 346 ~~~~v~~~a~~aL~~l~~ 363 (552)
+.+.++..++.+|...+.
T Consensus 220 ~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 220 TSPSVKLDSLQTLKACIE 237 (262)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 999999999999987754
No 245
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.62 E-value=5 Score=34.02 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l 382 (552)
.+|+..-...|..+.. +.... ..++..|.+-+.+.++.++..|+..|-.+..+.+...+.++.....++.+
T Consensus 15 ~~dw~~il~icD~I~~---~~~~~------k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL 85 (144)
T cd03568 15 SENWGLILDVCDKVKS---DENGA------KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL 85 (144)
T ss_pred CcCHHHHHHHHHHHhc---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 4566665555555532 11111 24677788888899999999999999999888877788888888899999
Q ss_pred HhhhcC-CChhHHHHHHHHHHHhhc
Q 008827 383 ASLICD-PEPSVQEQALALVRNLVD 406 (552)
Q Consensus 383 ~~ll~~-~~~~v~~~a~~~L~~l~~ 406 (552)
.+++.. .++.|+..++.++.....
T Consensus 86 ~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 86 KKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHH
Confidence 999987 788899999988877753
No 246
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=86.61 E-value=2.1 Score=31.33 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhc-CCCCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827 11 VDAGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVL 79 (552)
Q Consensus 11 ~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i 79 (552)
+++|+.|+-++..++... .++ +.+.++.++++.. ++..++|--+.-+|.-++++.+..+.+.+.||.
T Consensus 4 lKaaLWaighIgss~~G~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW~ 72 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGI--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGWE 72 (73)
T ss_pred HHHHHHHHHhHhcChHHH--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCCC
Confidence 688999999998776554 444 4689999999997 567889988888999999888888888888874
No 247
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=52 Score=35.45 Aligned_cols=281 Identities=18% Similarity=0.122 Sum_probs=146.2
Q ss_pred cccHHHHHHhcCC--------CCHHHHHHHHHHHHHhhc--ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827 248 LQVLKLVVDALAH--------DSSDVRSAACMCLRSVSR--SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAIS 317 (552)
Q Consensus 248 ~~~l~~lv~~L~~--------~~~~v~~~a~~~L~~ls~--~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 317 (552)
.|.++.++..|.. +++.-.+.|...+.++.. .....-.. +.+.=+++.++-.++++.--++..||..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an-~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAAN-VMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHH-HHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 4788899888841 233444555555555543 11111112 333444555666667777788999999999
Q ss_pred HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH--hhcHHHHHhhhcCCChhHHH
Q 008827 318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPEPSVQE 395 (552)
Q Consensus 318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~ll~~~~~~v~~ 395 (552)
.+..+.++ .-+-..+.+.....+++.+-.++..|.-|+..+..+.. ...++.+ .+.++-|+.+-+.-+-++..
T Consensus 486 ~~eeDfkd---~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 486 TIEEDFKD---NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHHhccc---chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence 88655543 22223456666677777788899999999998876432 2222222 23344455555555545444
Q ss_pred HHHHHHH-HhhcCCcchHHHHHhhcCchHH----HHHHHhcccC-----chhHHHHHHHHHHhhcC---CChhhHHHHHH
Q 008827 396 QALALVR-NLVDGRINSVEYIFAEDGIILD----AVGRQLRIAS-----KAEIEIQGMYVLGNVAT---GKESHKEAVMD 462 (552)
Q Consensus 396 ~a~~~L~-~l~~~~~~~~~~i~~~~~~~~~----~l~~~L~~~~-----~~~v~~~a~~~L~~la~---~~~~~~~~i~~ 462 (552)
.++..+. ..+.--......+.+. +.+ +-..++.+++ .++-+.+|.+.|..+.+ .-+ ++-.++.
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~---Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle-n~p~vLk 636 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGS---LVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE-NRPLVLK 636 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHH---HHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc-cchHHHH
Confidence 4443332 2222111111111111 223 2223333321 12344556666655442 111 1222221
Q ss_pred HhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCC-ccHHHHHHHHH
Q 008827 463 QLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPC-LDVKLRVKTAL 541 (552)
Q Consensus 463 ~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~-~~v~~~a~~al 541 (552)
.+ .....|.+--.|.+.-.+.-.+|+-.+-+.+. -..+- .-..=|+.+.+.+++.++. .+--+.+..|+
T Consensus 637 ~l----e~slypvi~Filkn~i~dfy~Ea~dildg~tf----~skeI--~pimwgi~Ell~~~l~~~~t~~y~ee~~~al 706 (970)
T COG5656 637 YL----EVSLYPVISFILKNEISDFYQEALDILDGYTF----MSKEI--EPIMWGIFELLLNLLIDEITAVYSEEVADAL 706 (970)
T ss_pred HH----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH----HHHHh--hhhhhHHHHHHHhcccccchhhhHHHHHHHH
Confidence 10 02333444445566667777888888877764 11111 1123356667777766544 35566778899
Q ss_pred HHHhhhc
Q 008827 542 EQFNSFD 548 (552)
Q Consensus 542 ~~~~~~~ 548 (552)
.+|...|
T Consensus 707 ~nfityG 713 (970)
T COG5656 707 DNFITYG 713 (970)
T ss_pred HHHHHhC
Confidence 9888765
No 248
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.25 E-value=12 Score=31.54 Aligned_cols=94 Identities=9% Similarity=0.107 Sum_probs=62.2
Q ss_pred cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-hHHHHHHHhh
Q 008827 387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-HKEAVMDQLL 465 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~ 465 (552)
.++|+......+..+..= +..... ++..+.+-|++ +++.++..|+..|-.+...+-. ....|..
T Consensus 15 ~~~dw~~ileicD~In~~----~~~~k~-------a~rai~krl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evas--- 79 (139)
T cd03567 15 REEDWEAIQAFCEQINKE----PEGPQL-------AVRLLAHKIQS-PQEKEALQALTVLEACMKNCGERFHSEVGK--- 79 (139)
T ss_pred CCCCHHHHHHHHHHHHcC----CccHHH-------HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHh---
Confidence 355666666666665431 111111 56667777777 8999999999999988874432 2333443
Q ss_pred HhhhhhhHHHHHHhhcC------CChhHHHHHHHHHHhhc
Q 008827 466 LRAENKAQSCIIKFLQS------NDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 466 ~~~~~~~v~~Lv~lL~~------~~~~~~~~a~~~l~~l~ 499 (552)
.+++.-+++++.. .+..|+......+...+
T Consensus 80 ----~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 80 ----FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred ----HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 6888889998853 46789988888876654
No 249
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.07 E-value=59 Score=35.80 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=83.2
Q ss_pred HHHHhhCcHHHHHHhhcCC--------CHHHHHHHHHHHHHhcccCChHhHHHHHHhh--------cHHHHHhhhc----
Q 008827 328 STFIRLGGVKLLVQLSKSM--------DSTIRLNALRALRNLIFLAEDKCKEEIFMEL--------TASLLASLIC---- 387 (552)
Q Consensus 328 ~~~~~~g~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~--------~~~~l~~ll~---- 387 (552)
+-+...+++..++++..-+ ..+....|+.+|+-++. -|+.+..+.+.. ++..|++.-.
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~--iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS--IPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe--cchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 3466678888888876542 34566667777765543 356666666542 3333333222
Q ss_pred CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH---HHHHHhhcCCChhhHHHHHHHh
Q 008827 388 DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG---MYVLGNVATGKESHKEAVMDQL 464 (552)
Q Consensus 388 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a---~~~L~~la~~~~~~~~~i~~~~ 464 (552)
-.|++++..|+.++.|+.+..|+.....+.. ...+++++.+...+ ...|.+.-. .....+.
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~----------v~S~~g~~r~~l~~~~ks~~le~~l~----~mw~~Vr-- 736 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVA----------VGSQSGDRRIFLGAGTKSAKLEQVLR----QMWEAVR-- 736 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhh----------ccccCCCccccccCCCchHHHHHHHH----HHHHHHh--
Confidence 2389999999999999988866533222211 11111111110000 001111000 1111121
Q ss_pred hHhhhhhhHHHHHHhhcCCCh-----hHHHHHHHHHHhhcC
Q 008827 465 LLRAENKAQSCIIKFLQSNDS-----RLRTAAVWAVLNLTC 500 (552)
Q Consensus 465 ~~~~~~~~v~~Lv~lL~~~~~-----~~~~~a~~~l~~l~~ 500 (552)
..+++..|+++|+-.++ .+|.-|+.+|.-|+.
T Consensus 737 ----~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR 773 (1516)
T KOG1832|consen 737 ----GNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR 773 (1516)
T ss_pred ----cCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc
Confidence 25667899999986432 489999999999996
No 250
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=85.84 E-value=38 Score=33.37 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=106.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhHHHHHhh-C-cHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 008827 294 VIPLVRLLDDTSTAVQVAALGAISNIVV-DFTTRRSTFIRL-G-GVKLLVQLSKSM-----D--------STIRLNALRA 357 (552)
Q Consensus 294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~-~~~~~~~~~~~~-g-~i~~L~~ll~~~-----~--------~~v~~~a~~a 357 (552)
++.+.+.|....+.+...+...|..++. +.+.....+... + -.+.+.+++... + +.+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888888888888899999999987 554554455432 1 223334443211 1 2899999998
Q ss_pred HHHhcccCChHhHHHHHHhh-cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCc----chHHHHHhhcCchHHHHHHHhcc
Q 008827 358 LRNLIFLAEDKCKEEIFMEL-TASLLASLICDPEPSVQEQALALVRNLVDGRI----NSVEYIFAEDGIILDAVGRQLRI 432 (552)
Q Consensus 358 L~~l~~~~~~~~~~~i~~~~-~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~i~~~~~~~~~~l~~~L~~ 432 (552)
+..+....++..+..+++.. .+..+++-|..+++++....+..+..-...++ .....+|++. ++..+..+...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~--~L~~l~~Ly~~ 215 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEW--TLSQLASLYSR 215 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHH--HHHHHHHHhcc
Confidence 88887777888888888654 57888888989999999999999886443322 1223455555 67788776655
Q ss_pred cCch----hHHHHHHHHHHhhcC
Q 008827 433 ASKA----EIEIQGMYVLGNVAT 451 (552)
Q Consensus 433 ~~~~----~v~~~a~~~L~~la~ 451 (552)
.++ .+...+-..|..+++
T Consensus 216 -~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 216 -DGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred -cCCcccchHHHHHHHHHHHHhc
Confidence 444 667777777777665
No 251
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=85.36 E-value=91 Score=37.32 Aligned_cols=264 Identities=15% Similarity=0.150 Sum_probs=130.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHH---HHH
Q 008827 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKED---MQK 199 (552)
Q Consensus 123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~---~~~ 199 (552)
...++.++.--+..+|......|-.+.... -...+...|..++.+++++......+|++|--+... .+.
T Consensus 194 ~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds--------~h~~v~~~L~~ll~~~~~L~~~iLd~Ls~L~Ls~~~l~~vr~ 265 (1426)
T PF14631_consen 194 TDKLFEVLSIAPVELQKEIISSLPEILDDS--------QHDEVVEELLELLQENPELTVPILDALSNLNLSPELLEEVRE 265 (1426)
T ss_dssp HHHHHHHHHHS-TTTHHHHHHTHHHHS-GG--------GHHHHHHHHHHHHHH-STTHHHHHHHHHHS---HHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcch--------hHHHHHHHHHHHHhcCCchhhhHHHHHhcCCCCHHHHHHHHH
Confidence 344445555444555555555555544321 124577888888887777777778888888644332 223
Q ss_pred HHHH------hCcHHHHHHhhhcCCCChhhHHHHHHHHHH-hh-----------cCChhHHHHH----------HhcccH
Q 008827 200 LAFE------VNGVDKLYNHLQKGSLHPRRFEGILLALAD-MC-----------SKLECCRSRC----------LSLQVL 251 (552)
Q Consensus 200 ~~~~------~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~-l~-----------~~~~~~~~~~----------~~~~~l 251 (552)
.+.+ .+.+|.++++|-......+..+ .+.-|.. |- ......+... ...+..
T Consensus 266 ~vl~~L~s~~~e~LP~lirFLL~s~t~~da~e-vI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~ 344 (1426)
T PF14631_consen 266 KVLEKLSSVDLEDLPVLIRFLLQSITPSDAVE-VISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCE 344 (1426)
T ss_dssp HHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHH-HHHHHHHHHH-------------------------------HHHHHH
T ss_pred HHHHHHhcCChhhhHHHHHHHHHhCCcccHHH-HHHHHHHHccccccccchhhcccccccccCcccccccccccccccHH
Confidence 3332 2448999997765321111111 1111111 10 0000000000 001123
Q ss_pred HHHHHhcCCC---CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhH
Q 008827 252 KLVVDALAHD---SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRR 327 (552)
Q Consensus 252 ~~lv~~L~~~---~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~ 327 (552)
..+++.++.+ ...+..++.+.|.++... .++.++..++-++= +.+..-+..+-..+.+-.... ...
T Consensus 345 ~lil~~lks~lr~~k~l~eawiK~I~~~~~~---------~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g-~it 414 (1426)
T PF14631_consen 345 KLILDVLKSGLRFSKDLSEAWIKAIESLEDA---------SDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSG-HIT 414 (1426)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHGGGS---------TT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT--S-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhcCCCc---------cccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-ccc
Confidence 4455555543 556777777777766432 23455666555542 333344555666666544321 111
Q ss_pred HHHH----------hhCcHHHHH----HhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhH
Q 008827 328 STFI----------RLGGVKLLV----QLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV 393 (552)
Q Consensus 328 ~~~~----------~~g~i~~L~----~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v 393 (552)
..++ =....+.++ .++.+.++.++..+......+....+.-+++++ +..|+..+.+.+..-
T Consensus 415 ~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeV-----v~~Lvthi~sg~~~e 489 (1426)
T PF14631_consen 415 EQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEV-----VGALVTHIGSGNSQE 489 (1426)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHH-----HHHHHHHHHH--HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHH-----HHHHHHHHcCCcHHH
Confidence 1111 123444444 356778999999988877777554443345554 445666665555555
Q ss_pred HHHHHHHHHHhhcCCcc
Q 008827 394 QEQALALVRNLVDGRIN 410 (552)
Q Consensus 394 ~~~a~~~L~~l~~~~~~ 410 (552)
...|+.+|..++..+++
T Consensus 490 v~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 490 VDAALDVLCELAEKNPS 506 (1426)
T ss_dssp HHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhccHH
Confidence 57889999999876544
No 252
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.31 E-value=83 Score=36.81 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=90.8
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchH
Q 008827 333 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV 412 (552)
Q Consensus 333 ~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 412 (552)
.|++|.|..-|.+.+..+|..|+..++.+.... .....--....+...+.-+.+-+.+++..++....++..++|+..
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~--~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK--DSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc--hhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 489999999999999999999999999986532 111110011245556666778888999999988888887776543
Q ss_pred HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHH
Q 008827 413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV 492 (552)
Q Consensus 413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~ 492 (552)
..... ...+.. .+ .++.++.....++..+... .....+. ...+..+-..+++....||+.|.
T Consensus 336 ~~~~~-----~~~l~~--~~-~D~~~rir~~v~i~~~~v~---~~~l~~~-------~~ll~~~~eR~rDKk~~VR~~Am 397 (1266)
T KOG1525|consen 336 KASTI-----LLALRE--RD-LDEDVRVRTQVVIVACDVM---KFKLVYI-------PLLLKLVAERLRDKKIKVRKQAM 397 (1266)
T ss_pred hHHHH-----HHHHHh--hc-CChhhhheeeEEEEEeehh---Hhhhhhh-------HHHHHHHHHHHhhhhHHHHHHHH
Confidence 33221 112211 11 4455554443333332221 1222222 12556667777888899999998
Q ss_pred HHHHhhc
Q 008827 493 WAVLNLT 499 (552)
Q Consensus 493 ~~l~~l~ 499 (552)
.-+..+-
T Consensus 398 ~~LaqlY 404 (1266)
T KOG1525|consen 398 NGLAQLY 404 (1266)
T ss_pred HHHHHHH
Confidence 8886654
No 253
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.17 E-value=6.1 Score=33.22 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l 382 (552)
++|+..-...|..+.. +.... ..++..+.+-+.+.++.++..|+..|-.+..+..+..+.++.....++.+
T Consensus 16 ~~dw~~ileicD~In~---~~~~~------k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 16 EEDWEAIQAFCEQINK---EPEGP------QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCHHHHHHHHHHHHc---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 4566666666666631 11111 24677788889999999999999999988887777788888888888889
Q ss_pred HhhhcC------CChhHHHHHHHHHHHhh
Q 008827 383 ASLICD------PEPSVQEQALALVRNLV 405 (552)
Q Consensus 383 ~~ll~~------~~~~v~~~a~~~L~~l~ 405 (552)
++++.. .++.|+..++.++..-.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 999853 56789998888876655
No 254
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.97 E-value=2.7 Score=38.33 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHhhcCCcchHHHHHhhcC-----chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827 391 PSVQEQALALVRNLVDGRINSVEYIFAEDG-----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL 465 (552)
Q Consensus 391 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~-----~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~ 465 (552)
..-|.-|+.+|..++..+. +.+.++..+. .++..|+++|....++..++.++-.|.+++.+++.....+..
T Consensus 138 lSPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~--- 213 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAM--- 213 (257)
T ss_pred CCHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHH---
Confidence 3567888999999885532 2233322221 167788888887678889999999999999988865555543
Q ss_pred HhhhhhhHHHHHHhhcCCChh
Q 008827 466 LRAENKAQSCIIKFLQSNDSR 486 (552)
Q Consensus 466 ~~~~~~~v~~Lv~lL~~~~~~ 486 (552)
..+.+..|+.++.+.+..
T Consensus 214 ---q~~~i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 214 ---QKPCISHLIAFIEDAEQN 231 (257)
T ss_pred ---hhchHHHHHHHHHHHHHH
Confidence 267789999999876543
No 255
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=84.55 E-value=20 Score=36.03 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=79.1
Q ss_pred hhH-HhHHHHHHHhcCC----CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhh-cCC-CChhhHHHHHHHHH
Q 008827 160 GIK-TKLINNLLELLDD----PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ-KGS-LHPRRFEGILLALA 232 (552)
Q Consensus 160 ~~~-~g~i~~Lv~ll~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~-~~~~~~~~a~~aL~ 232 (552)
.++ ......|..++++ .+.+...|+..++.+..++|.....+.+.|.++.+++.+. ... +..++....-.+|+
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 445 5566777777763 2567889999999999999988888889999999999887 432 34566677778999
Q ss_pred HhhcCChhHHHHHHhcccHHHHHHhcCCCC
Q 008827 233 DMCSKLECCRSRCLSLQVLKLVVDALAHDS 262 (552)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~ 262 (552)
.+|-+ ..-.+.+.+.+.++.+.+.+.++.
T Consensus 181 AicLN-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 181 AICLN-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 99985 455677888899999999987654
No 256
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.49 E-value=19 Score=34.19 Aligned_cols=158 Identities=12% Similarity=0.159 Sum_probs=90.2
Q ss_pred hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcC--chHHHHHhhcC-----CHHHHHHHHHHHHHHhcCChhh
Q 008827 38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAG--VLKRLTSLLGG-----SLIQRDASLESIATIFKNNPEV 110 (552)
Q Consensus 38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g--~i~~L~~lL~~-----~~~v~~~al~~L~~l~~~~~~~ 110 (552)
...+..++..=..+.+.-+.+++.-+...+.....+...+ ....+..++.. .+..+.-++++++|+......
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~- 143 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG- 143 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-
Confidence 3444555544344556677777776665555444444433 24455555432 457788899999997654333
Q ss_pred hhhhccccCCc-cHHHHHHHHhcC----ChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhc-C--CCCchhch
Q 008827 111 VSQFVGPDTGR-TLSCIIEIVKDR----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-D--DPGRVGDE 182 (552)
Q Consensus 111 ~~~~~~~~~~~-~l~~l~~ll~~~----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll-~--~~~~v~~~ 182 (552)
...+... .. .+...+....+. +..+|.+++..+.|++........+.-.....+..+++.+ . .++++...
T Consensus 144 ~~~~~~~--~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 144 RQLLLSH--FDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp HHHHHCT--HHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred HHHHHhc--ccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 2333221 12 232333322333 7899999999999997643211112223344677777743 3 45678889
Q ss_pred HHHHHHHhhcCCHHHH
Q 008827 183 ASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 183 a~~~L~~l~~~~~~~~ 198 (552)
...+++++...++...
T Consensus 222 ~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAK 237 (268)
T ss_dssp HHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHhccChhHH
Confidence 9999999997766543
No 257
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.47 E-value=6.8 Score=33.11 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=61.0
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc-CCChhHHHHHHHHHHHhh
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLV 405 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~ 405 (552)
.++..|.+-+.++++.++..|+..|-.+..+.+...+..+.....++.+.+++. ..++.|+..++.++..-.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 567788888889999999999999998888767777888888888999999887 567789999998887765
No 258
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=83.63 E-value=33 Score=36.04 Aligned_cols=214 Identities=15% Similarity=0.107 Sum_probs=112.2
Q ss_pred hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--C----------CCchhchHHHHHHHhhcCCHHHH
Q 008827 131 KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--D----------PGRVGDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 131 ~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~----------~~~v~~~a~~~L~~l~~~~~~~~ 198 (552)
.|.+..|...|-..|..+...- -+...+..|..+.. . ++.+|.+....|.+-.. .
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~--------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~---A-- 313 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSL--------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI---A-- 313 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH---H--
Confidence 4566667777777776655431 12345555655554 1 12344444444443210 0
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHH---HHhhcCC-hhHHH---HHHhcccHHHHHH----hcCCCCHHHHH
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL---ADMCSKL-ECCRS---RCLSLQVLKLVVD----ALAHDSSDVRS 267 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL---~~l~~~~-~~~~~---~~~~~~~l~~lv~----~L~~~~~~v~~ 267 (552)
...-...+......|.+.....+++..++..+ .....+- +..-. ..+..++.|.+-. --...+...|.
T Consensus 314 -a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~ 392 (501)
T PF13001_consen 314 -ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRS 392 (501)
T ss_pred -HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHH
Confidence 00011222333333444423456666666666 4443322 22211 2233455555510 11235678999
Q ss_pred HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH--HHHhhCcHHHHH-Hhhc
Q 008827 268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS--TFIRLGGVKLLV-QLSK 344 (552)
Q Consensus 268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--~~~~~g~i~~L~-~ll~ 344 (552)
.+-.+|+.|++..+.+-. .+-+.+.-|++-|.++.++++.+.-.||..++..+..... ..........+. ....
T Consensus 393 ~aYe~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~ 469 (501)
T PF13001_consen 393 LAYETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQ 469 (501)
T ss_pred HHHHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhcc
Confidence 999999999987665421 3567788888888889999999999999988865543221 011111111122 2223
Q ss_pred CCCHHHHHHHHHHHHHh
Q 008827 345 SMDSTIRLNALRALRNL 361 (552)
Q Consensus 345 ~~~~~v~~~a~~aL~~l 361 (552)
+....+|..|+.-...+
T Consensus 470 ~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 470 SEVRSCRYAAVKYANAC 486 (501)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 34455677776555444
No 259
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.41 E-value=8.6 Score=32.08 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=59.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC---CChhHHHHHHHHHHHhhc
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD---PEPSVQEQALALVRNLVD 406 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~---~~~~v~~~a~~~L~~l~~ 406 (552)
.++..|.+-++++++.++..|+..|-.+..+.++..+..+.....+..+++++.. .++.|+..++.++.+...
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999887776677777776677778888865 477899999988877653
No 260
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.31 E-value=86 Score=35.38 Aligned_cols=286 Identities=12% Similarity=0.082 Sum_probs=146.7
Q ss_pred chHHHHHhh-cCCCCcchHHHHHHHHhhcC-ChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827 37 NMEFLLSLL-NNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ 113 (552)
Q Consensus 37 ~i~~l~~ll-~~~~~~~~~~a~~~l~~~~~-~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~ 113 (552)
+++.|...+ ++.+.+.+..+...+.++-. .+++-..+-+..-+|.++--+.+ ...+|...++.|..-... ...
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtv----vnc 542 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTV----VNC 542 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhh----hcc
Confidence 445555543 56778888888888887633 34444445555667777766666 346666666655431110 000
Q ss_pred hccccCCccHHHHHHHHhcCC-hhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC----CchhchHHHHHH
Q 008827 114 FVGPDTGRTLSCIIEIVKDRF-ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP----GRVGDEASFAFS 188 (552)
Q Consensus 114 ~~~~~~~~~l~~l~~ll~~~~-~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~----~~v~~~a~~~L~ 188 (552)
+ ...-+.++.-+++.+- ...+...+.....+...+. ..++.+++-|.++.|-..++.. ++-+.... .
T Consensus 543 v----PeqELlSLCvLLqqpIssalkhtIlsffvKLIsfDq-qyKkvlREVGvLevLqddlkqhkll~gpdqysgv---s 614 (2799)
T KOG1788|consen 543 V----PEQELLSLCVLLQQPISSALKHTILSFFVKLISFDQ-QYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGV---S 614 (2799)
T ss_pred C----cHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhH---H
Confidence 0 0122334455555432 2333344444444444332 2456677789999888777521 11111111 0
Q ss_pred HhhcC---CHHHHHHHHHhCcH---HHHHHhhhcCC-CChh-----hHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH
Q 008827 189 SLIAE---KEDMQKLAFEVNGV---DKLYNHLQKGS-LHPR-----RFEGILLALADMCSKLECCRSRCLSLQVLKLVVD 256 (552)
Q Consensus 189 ~l~~~---~~~~~~~~~~~~~i---~~L~~~L~~~~-~~~~-----~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~ 256 (552)
..... ++.+++..-....+ |++++ +++ ..|- .....-.+|..+-++++++.+.+.+..+...+++
T Consensus 615 ehydrnpss~sf~~~ld~~daiisspklme---SgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilp 691 (2799)
T KOG1788|consen 615 EHYDRNPSSPSFKQHLDSQDAIISSPKLME---SGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILP 691 (2799)
T ss_pred HHhhcCCCCchhhhccccccceeecchhhc---ccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEE
Confidence 11101 11111111001111 22222 110 0110 0112234666777788888899999888888877
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC--------C----HHHHHHHHHHHHHhhcCCc
Q 008827 257 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--------S----TAVQVAALGAISNIVVDFT 324 (552)
Q Consensus 257 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--------~----~~v~~~a~~aL~nl~~~~~ 324 (552)
++-+ .+-|......+..|-...+. -+.+..+-.+|..|++. . -.......+++..+...+.
T Consensus 692 flin--dehRSslLrivscLitvdpk-----qvhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvng 764 (2799)
T KOG1788|consen 692 FLIN--DEHRSSLLRIVSCLITVDPK-----QVHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNG 764 (2799)
T ss_pred eeec--hHHHHHHHHHHHHHhccCcc-----cccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCc
Confidence 7733 23333444444433222111 23456677888888763 1 2345566677777776666
Q ss_pred hhHHHHHhhCcHHHHHHhhc
Q 008827 325 TRRSTFIRLGGVKLLVQLSK 344 (552)
Q Consensus 325 ~~~~~~~~~g~i~~L~~ll~ 344 (552)
..+..+-++++...|...+.
T Consensus 765 saqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 765 SAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred hheeehhccccHHHHHHHHH
Confidence 66667788888888776654
No 261
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=83.16 E-value=21 Score=35.28 Aligned_cols=197 Identities=20% Similarity=0.161 Sum_probs=97.3
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccch
Q 008827 207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG 286 (552)
Q Consensus 207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~ 286 (552)
+..+..++..+. +.......+.++..=+..- ..-....++..+..-+++..+.+|+.++.+++...+...+....
T Consensus 24 ~~~l~~~~~KE~-nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 24 VQGLSPLLSKES-NEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 345555555542 3444445555544332211 11123346788888899888889999999998887611111111
Q ss_pred hhhccCcHHHHHHhhc----CCCHHHH----HHHHHHHHHhhcC-CchhHH-H----HHhhCcHHHHH---HhhcC-CCH
Q 008827 287 SFMNETIVIPLVRLLD----DTSTAVQ----VAALGAISNIVVD-FTTRRS-T----FIRLGGVKLLV---QLSKS-MDS 348 (552)
Q Consensus 287 ~~~~~~~i~~Lv~lL~----~~~~~v~----~~a~~aL~nl~~~-~~~~~~-~----~~~~g~i~~L~---~ll~~-~~~ 348 (552)
-.-..++|.|++.++ ++-+..+ ..|...+. +... ...... . .+..+-=|.++ ++... .++
T Consensus 99 -~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~ 176 (339)
T PF12074_consen 99 -KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE 176 (339)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH
Confidence 233568888888884 2322211 11111121 1110 000000 0 00000000000 11111 233
Q ss_pred HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCC--ChhHHHHHHHHHHHhhcCCcch
Q 008827 349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP--EPSVQEQALALVRNLVDGRINS 411 (552)
Q Consensus 349 ~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~ 411 (552)
+...-.+.++..+..+......... .......++.++.++ .++++..|..++..+....+..
T Consensus 177 ~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 3344455555555443222222222 233456677777777 8999999999999998887753
No 262
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=82.96 E-value=12 Score=31.66 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=65.7
Q ss_pred cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHH-HHHHHhh
Q 008827 387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE-AVMDQLL 465 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~-~i~~~~~ 465 (552)
..+|+......+..++.=.. .... ++..+.+-|.+ +++.++..|+..|..+..++..... .|.+
T Consensus 14 ~~~dw~~il~icD~I~~~~~----~~k~-------a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evas--- 78 (144)
T cd03568 14 TSENWGLILDVCDKVKSDEN----GAKD-------CLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVAS--- 78 (144)
T ss_pred CCcCHHHHHHHHHHHhcCCc----cHHH-------HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhh---
Confidence 34566666666655553211 1111 56667777777 8999999999999999875543333 3433
Q ss_pred HhhhhhhHHHHHHhhcC-CChhHHHHHHHHHHhhc
Q 008827 466 LRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 466 ~~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l~~l~ 499 (552)
.+++..|++++.. .+..|+......+...+
T Consensus 79 ----k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 79 ----RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred ----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 7888999999988 78899999998887765
No 263
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=82.90 E-value=2.8 Score=45.64 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=87.5
Q ss_pred hHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCC--HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHH
Q 008827 53 SGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS--LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIV 130 (552)
Q Consensus 53 ~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll 130 (552)
+-.+.-+++++|-..+. +. ...+|.+++-|.-+ ..+|.+...+++.+|..+.... ..++|.|..-+
T Consensus 948 ra~~vvTlakmcLah~~---La-Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~--------d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAHDR---LA-KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT--------DRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHhhhhH---HH-HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH--------HHhhHHHHHHh
Confidence 44455566776643221 11 12467777777642 3677788888888886553332 56889999999
Q ss_pred hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHh--HHHHHHHhcCCCCchhchHHHHHHHhhcC
Q 008827 131 KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTK--LINNLLELLDDPGRVGDEASFAFSSLIAE 193 (552)
Q Consensus 131 ~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g--~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~ 193 (552)
.|+++.||..+...|.++.+-+ .+.+.| .+..+..+++.+++++..|-++++.+...
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988742 233444 57778888888899999999999887654
No 264
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=82.50 E-value=65 Score=33.85 Aligned_cols=181 Identities=16% Similarity=0.094 Sum_probs=107.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc--C---------CCHHHHHHHHHHHHHh
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--D---------TSTAVQVAALGAISNI 319 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~---------~~~~v~~~a~~aL~nl 319 (552)
+++++-.-.+++.+|...|-..|..+... +.+..++..|+.+.. . .++.+|......|+.=
T Consensus 239 ~~~~liAsad~~~~V~~~ae~~LKr~~~~--------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS 310 (501)
T PF13001_consen 239 FPPLLIASADSNSSVSDRAEDLLKRLSVS--------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS 310 (501)
T ss_pred HhheeeEEeCCcchHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh
Confidence 33333344567788888888888777654 345677888888766 2 3678888877777641
Q ss_pred hcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHH---HHhcccCChHhHHHHHHhhcHHHHHhhh--------
Q 008827 320 VVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRAL---RNLIFLAEDKCKEEIFMELTASLLASLI-------- 386 (552)
Q Consensus 320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL---~~l~~~~~~~~~~~i~~~~~~~~l~~ll-------- 386 (552)
.. ..-.....+..+..-+.++ +.++|..++..+ .....+.++.. -..+.......+..++
T Consensus 311 ~~------Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~-l~~l~~~i~~~g~p~~~~~~~~~~ 383 (501)
T PF13001_consen 311 VI------AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQI-LKLLRPVILSQGWPLIQDSSSQSN 383 (501)
T ss_pred HH------HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHH-HHHHHHHHHhcCccccccccccCC
Confidence 10 0111123444444555555 567777777766 55444333321 1122222233333333
Q ss_pred cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827 387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 451 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~ 451 (552)
...+...+..+-.+|+.++...|.....=++ ++..|-+.|.+ ..++++...-.+|+.++.
T Consensus 384 ~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~----li~~LF~sL~~-~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 384 SSEDIELRSLAYETLGLLAKRAPSLFSKDLS----LIEFLFDSLED-ESPEVRVSIQEALSSLAP 443 (501)
T ss_pred CcccHHHHHHHHHHHHHHHccCcccccccHH----HHHHHHHHhhC-cchHHHHHHHHHHHHHHH
Confidence 1345678888999999999887754311122 56677676755 778888887777777765
No 265
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.39 E-value=28 Score=33.04 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=87.3
Q ss_pred HHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHh-Cc-HHHHHHhhhcCC--CChhhHHHHHHHHHHhhcCCh
Q 008827 165 LINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEV-NG-VDKLYNHLQKGS--LHPRRFEGILLALADMCSKLE 239 (552)
Q Consensus 165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~-i~~L~~~L~~~~--~~~~~~~~a~~aL~~l~~~~~ 239 (552)
....+.+++. .+.+-+.-+...+.-++. ++......... ++ ...+..++.... ..+..+.-++++++|+-. ++
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~-~~ 141 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS-HP 141 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT-SC
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC-CC
Confidence 3444455544 334445555555543333 33332222222 22 344444443332 346677889999999865 45
Q ss_pred hHHHHHHhcc--cHHHHHHhcCCC----CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh-cC-CCHHHHHH
Q 008827 240 CCRSRCLSLQ--VLKLVVDALAHD----SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DD-TSTAVQVA 311 (552)
Q Consensus 240 ~~~~~~~~~~--~l~~lv~~L~~~----~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~-~~~~v~~~ 311 (552)
..+..+.+.. .+...+..+... +..+|.+++.++.|++-.....+...-.....+..+++.+ .. .++|....
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 5666555432 233333333333 7899999999999997542221101011223466666633 32 69999999
Q ss_pred HHHHHHHhhcCCch
Q 008827 312 ALGAISNIVVDFTT 325 (552)
Q Consensus 312 a~~aL~nl~~~~~~ 325 (552)
++.|++++....+.
T Consensus 222 ~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 222 LLVALGTLLSSSDS 235 (268)
T ss_dssp HHHHHHHHHCCSHH
T ss_pred HHHHHHHHhccChh
Confidence 99999999965443
No 266
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=82.25 E-value=45 Score=32.42 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=93.6
Q ss_pred CcHHHHHHhhc-C---CCHHHHHHHHHHHHHhhcCCchhHHHHHhh-------Cc----HHHHHHhhc------CCCHHH
Q 008827 292 TIVIPLVRLLD-D---TSTAVQVAALGAISNIVVDFTTRRSTFIRL-------GG----VKLLVQLSK------SMDSTI 350 (552)
Q Consensus 292 ~~i~~Lv~lL~-~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-------g~----i~~L~~ll~------~~~~~v 350 (552)
.++..|+.++- . ..-.+|.+|+.++.....+++..+..+++. +. ...+++-+- +.|+.-
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 44555665542 2 256899999999999998888888766643 11 112443333 235545
Q ss_pred HHHHHHHHHHhcccCChHhHHHHHHh------------hcHHHHHhhhc-----CCChhHHHHHHHHHHHhhcCCcchHH
Q 008827 351 RLNALRALRNLIFLAEDKCKEEIFME------------LTASLLASLIC-----DPEPSVQEQALALVRNLVDGRINSVE 413 (552)
Q Consensus 351 ~~~a~~aL~~l~~~~~~~~~~~i~~~------------~~~~~l~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~ 413 (552)
...|..+|.++.. .+++.|+.++.- ..++.+..+|. +.++.++..-+.+|.--...+++.+.
T Consensus 114 ~wfAa~il~hll~-dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~ 192 (312)
T PF04869_consen 114 CWFAAVILMHLLR-DNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHT-T-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 5568888888877 445677665542 13445555442 45777888888888888888999999
Q ss_pred HHHhhcCchHHHHHHHhcccC--chhHHHHHHHHHHhh
Q 008827 414 YIFAEDGIILDAVGRQLRIAS--KAEIEIQGMYVLGNV 449 (552)
Q Consensus 414 ~i~~~~~~~~~~l~~~L~~~~--~~~v~~~a~~~L~~l 449 (552)
..+++++ .++.|+.....++ ++-|+--++..|+-+
T Consensus 193 ~FL~~~s-~l~~Li~~~~~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 193 DFLSEGS-NLQSLIEFSNQSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp HHHCSTT-HHHHHHHHHS--TCCCHHHHHHHHHHHHHH
T ss_pred HHHcCcc-hHHHHHHHhhcCCCCcchHHHHHHHHHHHH
Confidence 9998876 5677777553323 344555555555543
No 267
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=81.41 E-value=66 Score=32.77 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=132.2
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCC
Q 008827 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE 366 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~ 366 (552)
..+...+..|+.+++++|++-|......|.++-..+...+. ++.......+.++.... .+.--...+..++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~-~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRS-FIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHH-HHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 57778899999999999999999999999998766655554 44455667777777643 34455667778887765432
Q ss_pred hHhHHHHHHhhcHHHHHhhhcCCChh-HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHH
Q 008827 367 DKCKEEIFMELTASLLASLICDPEPS-VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 445 (552)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~ 445 (552)
...+++- .......++.|...+... ...+-..++..++..++.....++ ..+.+..-. .++.-+.-.+.-
T Consensus 208 ~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-------~~llk~WP~-t~s~Kev~FL~e 278 (409)
T PF01603_consen 208 VPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-------KGLLKHWPK-TNSQKEVLFLNE 278 (409)
T ss_dssp SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-------HHHHHHS-S-S-HHHHHHHHHH
T ss_pred CCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-------HHHHHhCCC-CCchhHHHHHHH
Confidence 1122211 112234455555554432 344555555555555554333322 222222211 233334444555
Q ss_pred HHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC---cHHH
Q 008827 446 LGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG---IVSH 521 (552)
Q Consensus 446 L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g---~~~~ 521 (552)
+..+.... +.....+. ..+...+...++|.+..|-+.|.....|= ....+.... +++.
T Consensus 279 l~~il~~~~~~~f~~i~--------~~lf~~la~ci~S~h~qVAErAl~~w~n~----------~~~~li~~~~~~i~p~ 340 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIM--------VPLFKRLAKCISSPHFQVAERALYFWNNE----------YFLSLISQNSRVILPI 340 (409)
T ss_dssp HHHHHTT--HHHHHHHH--------HHHHHHHHHHHTSSSHHHHHHHHGGGGSH----------HHHHHHHCTHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHCCH----------HHHHHHHhChHHHHHH
Confidence 55555422 23333343 35667888999999999988886544221 222333333 3444
Q ss_pred HHhhhc-----CCCccHHHHHHHHHHHHhhhcC
Q 008827 522 VKNMVN-----DPCLDVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 522 L~~ll~-----~~~~~v~~~a~~al~~~~~~~~ 549 (552)
+..-+. .=+..++..|..++..+.+.+.
T Consensus 341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 341 IFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp HHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 444332 1257799999999988877643
No 268
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.10 E-value=36 Score=35.52 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=75.4
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchH
Q 008827 333 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV 412 (552)
Q Consensus 333 ~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 412 (552)
.|.+..+++-+.+++..||.+++..|+.+..... .-.+.+-.+.+..|.+-+-+-.+.|+.+|+.+|..+-....+-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~--eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne- 166 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR--EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE- 166 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-
Confidence 4677788888888999999999999988754322 1224455566666777777888899999999998875331110
Q ss_pred HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827 413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG 447 (552)
Q Consensus 413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~ 447 (552)
...+...|..++++.|+.+|+..++.-+.
T Consensus 167 ------en~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 167 ------ENRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred ------HHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 01156677788888899999998876554
No 269
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.47 E-value=30 Score=31.33 Aligned_cols=106 Identities=12% Similarity=0.135 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc---C--CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK---S--MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 384 (552)
Q Consensus 310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~--~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 384 (552)
..|...|-.++. .++.|..++++..---+..++. + ..+.+|..++..++.+..+.++.....+....++|..++
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 344444444554 4555555655543222223332 1 246689999999999999888888888888899999999
Q ss_pred hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 008827 385 LICDPEPSVQEQALALVRNLVDGRINSVEYIFA 417 (552)
Q Consensus 385 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 417 (552)
++...++--+.-++.++..+..++ ...+++.+
T Consensus 197 Ime~gSElSktvaifI~qkil~dD-vGLqYiCq 228 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDD-VGLQYICQ 228 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccc-hhHHHHHH
Confidence 999998888888888888877654 34555544
No 270
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=80.41 E-value=14 Score=32.05 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=79.9
Q ss_pred cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827 206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 285 (552)
Q Consensus 206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 285 (552)
.++.|+++|+++ .++.+|..++++|+-+..-|+.-.+.+....- .- .-...+...... .+.+...+ ....
T Consensus 11 LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~~---~l~~~~~~--~~~e 80 (160)
T PF11865_consen 11 LLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTDI---SLPMMGIS--PSSE 80 (160)
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchhh---HHhhccCC--CchH
Confidence 467788888887 46889999999999997765544332211100 00 000111111111 11111111 1112
Q ss_pred hhhhccCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 286 GSFMNETIVIPLVRLLDDTS-TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 286 ~~~~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
. +.-..++..|++.|+|+. ..-...++.++.++..........++ ...+|.++..++..+...++.-.+-|+.+.
T Consensus 81 e-~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 E-YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred H-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2 455677888999998763 23344566666666532222111222 357888888888777677777776666653
No 271
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.00 E-value=98 Score=33.88 Aligned_cols=167 Identities=15% Similarity=0.188 Sum_probs=92.5
Q ss_pred HHHHHhhcHHHHHhhhcCCChhH-HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc--cCchhHHHHHHHHHH
Q 008827 371 EEIFMELTASLLASLICDPEPSV-QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI--ASKAEIEIQGMYVLG 447 (552)
Q Consensus 371 ~~i~~~~~~~~l~~ll~~~~~~v-~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~--~~~~~v~~~a~~~L~ 447 (552)
+++.+...++.+-+-+..+|.+. +..|+.+++.|+..-...+-.++... ++.+++.... +.++.-+..+++...
T Consensus 355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~---v~~~l~~y~~nPS~nWk~kd~aiyL~t 431 (960)
T KOG1992|consen 355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE---VQRLLDQYSKNPSGNWKKKDRAIYLVT 431 (960)
T ss_pred HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH---HHHHHHHhccCCCccccccchhhhhhH
Confidence 45666667778888888777775 45677899999877544444444432 3333322222 246667777888887
Q ss_pred hhcCCChhhHHHHHH--HhhHhhhhhhHHHHHHhhcC----CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHH
Q 008827 448 NVATGKESHKEAVMD--QLLLRAENKAQSCIIKFLQS----NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH 521 (552)
Q Consensus 448 ~la~~~~~~~~~i~~--~~~~~~~~~~v~~Lv~lL~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~ 521 (552)
.++......+..+.. .+....+. +...+..-|.+ ..+.++..+..-+..+- ..-.+++. ...++.
T Consensus 432 alaik~~t~~~Gvtstn~lvdv~~F-f~~~ilp~L~s~~vn~~pilka~aIKy~~~FR---~ql~~~~l-----m~~~p~ 502 (960)
T KOG1992|consen 432 ALAIKGQTAKHGVTSTNELVDVVDF-FANQILPDLLSPNVNEFPILKADAIKYIYTFR---NQLGKEHL-----MALLPR 502 (960)
T ss_pred HHHhhcchhhcceeeccccccHHHH-HHHHhhHHhccCccccccchhhcccceeeeec---ccCChHHH-----HHHHHH
Confidence 777532211111110 00000001 11222333334 23456666554443222 11123332 335899
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827 522 VKNMVNDPCLDVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 522 L~~ll~~~~~~v~~~a~~al~~~~~~~~ 549 (552)
+.+.++.++.-|.-.|+.|++.+...-+
T Consensus 503 li~~L~a~s~vvhsYAA~aiEkil~vre 530 (960)
T KOG1992|consen 503 LIRFLEAESRVVHSYAAIAIEKLLTVRE 530 (960)
T ss_pred HHHhccCcchHHHHHHHHHHHhcccccc
Confidence 9999998888899999999998876544
No 272
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=79.84 E-value=56 Score=30.94 Aligned_cols=213 Identities=15% Similarity=0.184 Sum_probs=114.5
Q ss_pred CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHH
Q 008827 175 DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLV 254 (552)
Q Consensus 175 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l 254 (552)
+++.+|..|...|+.+...-+.. .....-+..|++++.+.-.+......++.++..|..... ..... ....+..+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~-~~~i~~~l 85 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPES-AVKILRSL 85 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhh-HHHHHHHH
Confidence 34556777777766665443321 122233455555444332234444445666666653211 10000 01122222
Q ss_pred HHhcC--CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHH
Q 008827 255 VDALA--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFI 331 (552)
Q Consensus 255 v~~L~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~ 331 (552)
.+-.+ .-....|......+..+-.+....-.. ...+++..+++.++ ..||+-...+...+..+...++.
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~--~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~------ 157 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS--MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI------ 157 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh--chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc------
Confidence 22222 223567888888888775542211111 33567788888887 46898888888888777665542
Q ss_pred hhCcHHHHHHhhcC---------C-CH--HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHH
Q 008827 332 RLGGVKLLVQLSKS---------M-DS--TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALA 399 (552)
Q Consensus 332 ~~g~i~~L~~ll~~---------~-~~--~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~ 399 (552)
....+.+.+.... + ++ -.++.-..+|.+... +. ..+....++.+++-|.++.+.++..++.
T Consensus 158 -~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~-----~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 158 -SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-ST-----PLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred -chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-Cc-----HhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 2233333333321 1 11 233333444444332 22 2334567899999999999999999999
Q ss_pred HHHHhhcC
Q 008827 400 LVRNLVDG 407 (552)
Q Consensus 400 ~L~~l~~~ 407 (552)
+|...+..
T Consensus 231 tL~~c~~~ 238 (262)
T PF14500_consen 231 TLKACIEN 238 (262)
T ss_pred HHHHHHHH
Confidence 99887754
No 273
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=79.37 E-value=45 Score=29.65 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=53.4
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827 292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363 (552)
Q Consensus 292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 363 (552)
.+++.++++..+++..++..|...+.-+.... .+.-...+|.++.+..++++.+|..|...+..+..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-----LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG-----LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-----CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 46778888888999999999999997655421 01112478999999999999999999999998855
No 274
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.35 E-value=21 Score=29.77 Aligned_cols=71 Identities=10% Similarity=0.198 Sum_probs=53.0
Q ss_pred hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC---CChhHHHHHHHHHHhh
Q 008827 422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNL 498 (552)
Q Consensus 422 ~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~---~~~~~~~~a~~~l~~l 498 (552)
++..+.+-|.+ +++.++..|+.+|-.+...+.......+. ...++..|++++.. .+..|+..+...+.+.
T Consensus 38 a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~------s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 38 AARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVA------DKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHh------hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 56777777887 89999999999999998865443333333 15777778888875 4678999988888766
Q ss_pred c
Q 008827 499 T 499 (552)
Q Consensus 499 ~ 499 (552)
.
T Consensus 111 ~ 111 (133)
T cd03561 111 S 111 (133)
T ss_pred H
Confidence 5
No 275
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=78.90 E-value=36 Score=38.89 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=88.5
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-HHHHHhhCcHHHHHHh--------hcC-CCHHHHHHHHHHHHH
Q 008827 291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-RSTFIRLGGVKLLVQL--------SKS-MDSTIRLNALRALRN 360 (552)
Q Consensus 291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~~~~g~i~~L~~l--------l~~-~~~~v~~~a~~aL~~ 360 (552)
.++++.|+..+.++.+++|.-++.+++.+....... -...++...+..+.-+ ..+ --..+|+.++++|..
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 366777888888888999998888888876533221 1112222222222111 111 124689999999999
Q ss_pred hcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHH
Q 008827 361 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI 440 (552)
Q Consensus 361 l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~ 440 (552)
+..+.++....+ .++.+.++++.+.++++-.-+..+.....-..+.....+. .+++.....|++ .+..++.
T Consensus 156 ~l~~~~~s~~~~-----~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~---~vl~~~i~~L~d-s~ddv~~ 226 (1549)
T KOG0392|consen 156 YLKHMDESLIKE-----TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLN---LVLDFVIEGLED-SDDDVRS 226 (1549)
T ss_pred HHHhhhhHhhHH-----HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhh-cchHHHH
Confidence 887655433333 4667788888777766544443333332211111222221 266777777777 6677777
Q ss_pred HHHHHHHhhcC
Q 008827 441 QGMYVLGNVAT 451 (552)
Q Consensus 441 ~a~~~L~~la~ 451 (552)
.|...+.-++.
T Consensus 227 ~aa~~l~~~~s 237 (1549)
T KOG0392|consen 227 VAAQFLVPAPS 237 (1549)
T ss_pred HHHHHhhhhhH
Confidence 77777766654
No 276
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=78.50 E-value=17 Score=29.62 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=50.6
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC-CcHHHHHhhhc--------CCCccHHHHHHHHHH
Q 008827 472 AQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA-GIVSHVKNMVN--------DPCLDVKLRVKTALE 542 (552)
Q Consensus 472 ~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~-g~~~~L~~ll~--------~~~~~v~~~a~~al~ 542 (552)
+...|.+-|++.++.|+..|..+|-.++. .|..+....+.+. .+|..+.+.-. +....||+.|..++.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~---~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCE---KGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHh---hCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 34678888999999999999999999995 4666666665544 23344444322 123458999999888
Q ss_pred HHhhh
Q 008827 543 QFNSF 547 (552)
Q Consensus 543 ~~~~~ 547 (552)
-+...
T Consensus 116 ~if~~ 120 (122)
T cd03572 116 AIFSY 120 (122)
T ss_pred HHhcc
Confidence 77653
No 277
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.14 E-value=14 Score=30.79 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=58.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC--hhHHHHHHHHHHHhh
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--PSVQEQALALVRNLV 405 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~--~~v~~~a~~~L~~l~ 405 (552)
.++..|.+-++++++.++..|+..|..+..+.+...+.++.....++.+..++.+.. +.|+..++.++..-.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 466778888889999999999999999988777778888888888999999887543 238888887776654
No 278
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=78.06 E-value=60 Score=30.33 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhhcCCChhhHHHHHH
Q 008827 437 EIEIQGMYVLGNVATGKESHKEAVMD 462 (552)
Q Consensus 437 ~v~~~a~~~L~~la~~~~~~~~~i~~ 462 (552)
-+|..++.+|..++...+..|+.+++
T Consensus 128 yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 128 YVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 46666777777776666656666653
No 279
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.75 E-value=40 Score=32.34 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=63.7
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHH----HHHhhc--------CCCHHHHHHHHHHHH
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP----LVRLLD--------DTSTAVQVAALGAIS 317 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~----Lv~lL~--------~~~~~v~~~a~~aL~ 317 (552)
++|.++.++.+.++++|..++.++..+-..........+...|..+. +...|- ++...+...|..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 69999999999999999999999999976543222110333444333 333332 345667778877777
Q ss_pred HhhcC---C-chhH----HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 318 NIVVD---F-TTRR----STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 318 nl~~~---~-~~~~----~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
.++.- . ...+ ..++..|++..+......+.+.++...+..+..+.
T Consensus 200 ~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 200 SLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 77331 1 1111 12333333333332222234666666655555543
No 280
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=74.91 E-value=6.7 Score=35.91 Aligned_cols=83 Identities=24% Similarity=0.133 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhh-------CcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhc
Q 008827 307 AVQVAALGAISNIVVDFTTRRSTFIRL-------GGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 378 (552)
Q Consensus 307 ~v~~~a~~aL~nl~~~~~~~~~~~~~~-------g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~ 378 (552)
.-|..|..+|+.++....+ -..++.. ..+..|++++.. +++..|+-|+-.|.+++.+++.-++....+.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~N-VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENN-VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheeccC-cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4588899999988753322 2222222 355666776664 578899999999999998776666676667777
Q ss_pred HHHHHhhhcCCC
Q 008827 379 ASLLASLICDPE 390 (552)
Q Consensus 379 ~~~l~~ll~~~~ 390 (552)
+..|+.++.+.+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 888888886544
No 281
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=74.46 E-value=1.1e+02 Score=31.39 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=86.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCC------ChhHHHH-HHHHHHHhhcC
Q 008827 337 KLLVQLSKSMDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDP------EPSVQEQ-ALALVRNLVDG 407 (552)
Q Consensus 337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~------~~~v~~~-a~~~L~~l~~~ 407 (552)
..+..+.+..+..-|..|+..+..++.+.+- ..|+.+++.-|.+++-+++.+. .+.|..+ ++.+|.-+| .
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC-~ 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC-R 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh-C
Confidence 3466677777888899999999999876553 4577899999999999999643 2344444 444555444 3
Q ss_pred CcchH--HHHHhhcCchHHHHHHHhcccCchh------HHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 008827 408 RINSV--EYIFAEDGIILDAVGRQLRIASKAE------IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 479 (552)
Q Consensus 408 ~~~~~--~~i~~~~~~~~~~l~~~L~~~~~~~------v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l 479 (552)
.|+.. ..+++ -++.+...+..-.++. +.+.+..+|..++...+. ...++. .|.++.+.++
T Consensus 93 ~pElAsh~~~v~----~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia-------~G~~~~~~Q~ 160 (698)
T KOG2611|consen 93 VPELASHEEMVS----RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIA-------SGGLRVIAQM 160 (698)
T ss_pred ChhhccCHHHHH----hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHh-------cCchHHHHHH
Confidence 33311 23333 4677777775423333 566778888888876443 444444 6888888876
Q ss_pred hcCC
Q 008827 480 LQSN 483 (552)
Q Consensus 480 L~~~ 483 (552)
-.-.
T Consensus 161 y~~~ 164 (698)
T KOG2611|consen 161 YELP 164 (698)
T ss_pred HhCC
Confidence 5433
No 282
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.21 E-value=30 Score=29.89 Aligned_cols=143 Identities=10% Similarity=0.136 Sum_probs=74.6
Q ss_pred cHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827 250 VLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 328 (552)
Q Consensus 250 ~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 328 (552)
+++.+.++|+.+ ++.+|..+.++++.+.--.+...+. +. +..+.-. -.+.+......... ..+.....+
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~-~~--~~~~~~~--~~~~~~~~~~~~l~-----~~~~~~~~e 80 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKS-IQ--KSLDSKS--SENSNDESTDISLP-----MMGISPSSE 80 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhc-cc--ccCCccc--cccccccchhhHHh-----hccCCCchH
Confidence 577788888754 6999999999999985432221111 00 0000000 00111111111111 111111223
Q ss_pred HHHhhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHh
Q 008827 329 TFIRLGGVKLLVQLSKSMDS-TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 404 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l 404 (552)
.+.-..++..|++.++++.- .-...++.++.++....+..+ .-.=..++|.+++.+++.+...++-.+.-|+.+
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c--v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC--VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc--hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44445677888888887642 233456667776654333222 222234678888888877767777666555554
No 283
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=74.14 E-value=86 Score=30.16 Aligned_cols=204 Identities=14% Similarity=0.180 Sum_probs=134.3
Q ss_pred HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc---hhh-hccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA---GSF-MNETIVIPLVRLLDDTSTAVQVAALGAISN 318 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~---~~~-~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 318 (552)
..+.+.|.++.++.-+...+.+-+.-+..+..++-+-.-..+. .++ ....++..|+.--.+ .+++...+-..+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 3456778999999999999999999998888887543111111 111 122344444444222 36666666666665
Q ss_pred hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh----cHHHHHhhhcCCChhHH
Q 008827 319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL----TASLLASLICDPEPSVQ 394 (552)
Q Consensus 319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~----~~~~l~~ll~~~~~~v~ 394 (552)
... ++...+.+....-......+.+.++.++..-|..+...+.... ...-.+++... ..+..-.++++.+.-.+
T Consensus 152 cir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H-k~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 152 CIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH-KSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh-HHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 553 4445557778888888999999999898888888888775422 11222333222 23446678899999999
Q ss_pred HHHHHHHHHhhcCCcc---hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827 395 EQALALVRNLVDGRIN---SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG 452 (552)
Q Consensus 395 ~~a~~~L~~l~~~~~~---~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~ 452 (552)
.++..+++.+..+.+. ..+|+-+.. -+.++..+|+. +...+|-.|....--+.+.
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~e--nLKlmM~llrd-kskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPE--NLKLMMNLLRD-KSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHH--HHHHHHHHhhC-ccccchHHHHHHHHHHhcC
Confidence 9999999999865432 233443322 46777777877 7778899888877766653
No 284
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.01 E-value=12 Score=31.66 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=55.0
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhh
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLI 191 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~ 191 (552)
.++..|.+-+++.++.++..|+..|-.+.++...+....+...+++..|++++.+ ++.|+..+...+..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 4567777888999999999999999998887655555667778899999999973 3467777766665443
No 285
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=73.95 E-value=78 Score=29.60 Aligned_cols=82 Identities=13% Similarity=0.211 Sum_probs=51.2
Q ss_pred hHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHH--HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC
Q 008827 161 IKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLA--FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL 238 (552)
Q Consensus 161 ~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~ 238 (552)
....+.|.++++++.+++.-.. .++-.. .+...+.+ +-.|-++.|.+++.++..+.-+|.+|+.+|..+....
T Consensus 70 re~~A~~~li~l~~~~~~~~~~---l~GD~~--tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLED---LFGDFI--TEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEG 144 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHH---HHcchh--HhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC
Confidence 3456999999999843321000 000000 01111222 2245688888888888766778999999999999887
Q ss_pred hhHHHHHHh
Q 008827 239 ECCRSRCLS 247 (552)
Q Consensus 239 ~~~~~~~~~ 247 (552)
+..|..+++
T Consensus 145 ~~~Re~vi~ 153 (249)
T PF06685_consen 145 PISREEVIQ 153 (249)
T ss_pred CCCHHHHHH
Confidence 777776654
No 286
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=73.26 E-value=2.1e+02 Score=34.36 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=84.2
Q ss_pred cCcHHHHHHh----hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC
Q 008827 291 ETIVIPLVRL----LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE 366 (552)
Q Consensus 291 ~~~i~~Lv~l----L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 366 (552)
..+.+.++.+ |+++++.++..+......+-..+.. +.+..++..|+..+.+++..-...|+.+|..++...
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~- 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN- 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc-
Confidence 4556666655 4688999999999888887666643 334457788888876666655678899999997632
Q ss_pred hHhHHHHHH-hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH-HhcccCchhHHH----
Q 008827 367 DKCKEEIFM-ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR-QLRIASKAEIEI---- 440 (552)
Q Consensus 367 ~~~~~~i~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~-~L~~~~~~~v~~---- 440 (552)
...+.. ...+..++..+.+=+..-......+|..++.++......+..+ +..+++ .|.+ +++..+.
T Consensus 505 ---~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~de----l~ivIRKQLss-~~~~~K~~GII 576 (1426)
T PF14631_consen 505 ---PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDE----LHIVIRKQLSS-SNPKYKRIGII 576 (1426)
T ss_dssp ---HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHH----HHHHHHHHHT--SSHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHH----HHHHHHHhhcC-CcHHHHHHhHH
Confidence 222222 2234445555566566666777888888875543222222222 334443 4444 6665544
Q ss_pred HHHHHHHhhcC
Q 008827 441 QGMYVLGNVAT 451 (552)
Q Consensus 441 ~a~~~L~~la~ 451 (552)
.++..+..|+.
T Consensus 577 Gav~~i~~la~ 587 (1426)
T PF14631_consen 577 GAVMMIKHLAA 587 (1426)
T ss_dssp HHHHHHHHTT-
T ss_pred HHHHHHHHHHH
Confidence 24444455554
No 287
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=69.62 E-value=12 Score=31.49 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=56.9
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-CChh---HHHHHHHHHHHhh
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPS---VQEQALALVRNLV 405 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-~~~~---v~~~a~~~L~~l~ 405 (552)
.++..|.+-++++++.++..|+..|-.+..+.++..+..+.....++.+.+++.+ .... |++.++.++....
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4667788888899999999999999998887766777888777788899998864 3333 7888887776554
No 288
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=69.59 E-value=1.1e+02 Score=29.38 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=46.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-HHHHhhCcHHHHHHh----hc--------CCCHHHHHHHHHHH
Q 008827 292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-STFIRLGGVKLLVQL----SK--------SMDSTIRLNALRAL 358 (552)
Q Consensus 292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~~~~g~i~~L~~l----l~--------~~~~~v~~~a~~aL 358 (552)
-++|+++.+++|.+++++..++..|..+....+... ..+.+.|..+.+.+. +. .....+-..+.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468999999999999999999999999987554432 124556654444432 22 12334555555566
Q ss_pred HHh
Q 008827 359 RNL 361 (552)
Q Consensus 359 ~~l 361 (552)
..+
T Consensus 199 ~~L 201 (282)
T PF10521_consen 199 LSL 201 (282)
T ss_pred HHH
Confidence 655
No 289
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=69.35 E-value=92 Score=33.16 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhh
Q 008827 87 GGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNA 151 (552)
Q Consensus 87 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~ 151 (552)
+-....+.+|++.|+-+...+.....-+........+..++..++ .++..++.+++||.|+..+
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~ 618 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN 618 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC
Confidence 335677888998888877554333211111111223444444444 6788899999999998775
No 290
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=69.30 E-value=1.3e+02 Score=30.03 Aligned_cols=123 Identities=11% Similarity=0.113 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-----HHHHhhCcHH
Q 008827 263 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-----STFIRLGGVK 337 (552)
Q Consensus 263 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-----~~~~~~g~i~ 337 (552)
..-+.-|...|.++-...+.+.+ ..+..-+.++++.|..+|..|..-|-.++.+..-.+ ..+++.+-+.
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~------~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~ 111 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLAD------EAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLT 111 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhh------HHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHH
Confidence 34455566666666555444332 345667778888888888888888877776532111 1233344455
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCCh
Q 008827 338 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP 391 (552)
Q Consensus 338 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~ 391 (552)
.|..-....+..+|+.++..+..=.....++.-.+-++...++.+...|.+-+.
T Consensus 112 ~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtg 165 (460)
T KOG2213|consen 112 GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTG 165 (460)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccH
Confidence 555444445778888888777643222222222233333444444444444333
No 291
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=69.22 E-value=2.9e+02 Score=34.12 Aligned_cols=264 Identities=18% Similarity=0.213 Sum_probs=142.6
Q ss_pred hhhHHHHHHHHHHhhcC---ChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHH
Q 008827 221 PRRFEGILLALADMCSK---LECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP 296 (552)
Q Consensus 221 ~~~~~~a~~aL~~l~~~---~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~ 296 (552)
..++..|+..|..++.. .++....-.+..++.++..++. ..+.++|...+.|+.++...... . +. .+++.
T Consensus 1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~---n--Ik-SGWkt 1224 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN---N--VK-SGWKS 1224 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh---h--hh-cCcHH
Confidence 45667777777776652 1111111122347778877776 55779999999999988654221 1 22 36777
Q ss_pred HHHhhc----CCCHHHHHHHHHHHHHhhcCCchh-----HHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccC-
Q 008827 297 LVRLLD----DTSTAVQVAALGAISNIVVDFTTR-----RSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLA- 365 (552)
Q Consensus 297 Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~- 365 (552)
++.++. +.++.+...|..++..+..++-.. ...+ ...|.+|.++.... +.++-..|+..|.+++..-
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 777775 567888888888888776542210 0111 24666777776544 4566667776666441100
Q ss_pred -Ch------------------------Hh-----HHHHHHhhcHHHHHh---hhcCCChhHHHHHHHHHHHhhcCC----
Q 008827 366 -ED------------------------KC-----KEEIFMELTASLLAS---LICDPEPSVQEQALALVRNLVDGR---- 408 (552)
Q Consensus 366 -~~------------------------~~-----~~~i~~~~~~~~l~~---ll~~~~~~v~~~a~~~L~~l~~~~---- 408 (552)
.+ +. .........++.|.. +..++.++|+..|+..|-.+....
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 00 00 000111233444443 456888999999998876665331
Q ss_pred -cchHHHHHhhcCchHHHHHHHhccc------------------Cch--h--HHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827 409 -INSVEYIFAEDGIILDAVGRQLRIA------------------SKA--E--IEIQGMYVLGNVATGKESHKEAVMDQLL 465 (552)
Q Consensus 409 -~~~~~~i~~~~~~~~~~l~~~L~~~------------------~~~--~--v~~~a~~~L~~la~~~~~~~~~i~~~~~ 465 (552)
++.-..++... +++++- .+++. ++. . ..+.+..+|.++..-...+.+.+ ...+
T Consensus 1383 s~~~W~~if~~V--LFPIFd-~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L-~~~L 1458 (1780)
T PLN03076 1383 SLPLWERVFESV--LFPIFD-YVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV-NPLL 1458 (1780)
T ss_pred CHHHHHHHHHHH--HHHHHH-HHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 22223334332 444432 22210 000 1 12233334444443112122211 1111
Q ss_pred HhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 466 LRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 466 ~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.+++..|..++..++..+-..+..++.+|..
T Consensus 1459 ----~~~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 ----KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred ----HHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 4666777777777888888888899988875
No 292
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.41 E-value=48 Score=32.84 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=68.6
Q ss_pred ccHHHHHHhcCCC-------CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------CCCHHHHHH
Q 008827 249 QVLKLVVDALAHD-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAVQVA 311 (552)
Q Consensus 249 ~~l~~lv~~L~~~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v~~~ 311 (552)
.++|.++.++.+. +..........+..|..+ +.+.-. ..-+..+|.++..+- +.++.+|..
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N-~~l~le-~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN-PNLHLE-PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC-CCCchH-HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 3788888888643 566666677777777776 455444 455668888887761 235799999
Q ss_pred HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCC--HHHHHHHHHHHHHh
Q 008827 312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD--STIRLNALRALRNL 361 (552)
Q Consensus 312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~aL~~l 361 (552)
|+..+..++..++..-.. +...+...+.+.+.++. .....-|+..|..+
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999998765432111 12233445555554432 22355566666655
No 293
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=67.79 E-value=25 Score=29.30 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=52.8
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC--Cc-hhchHHHHHHHh
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP--GR-VGDEASFAFSSL 190 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~-v~~~a~~~L~~l 190 (552)
.++..|.+-++++++.++..|...|-.+...........+....++..|+.++... .+ |+..+...+..-
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 45666777888999999999999999988876555556677788999999999843 23 666666655544
No 294
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.39 E-value=2.7e+02 Score=32.77 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh--cCCCHHHHHHHHHHHH--HhhcCCchhHHHHHhhCcHH
Q 008827 262 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL--DDTSTAVQVAALGAIS--NIVVDFTTRRSTFIRLGGVK 337 (552)
Q Consensus 262 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL--~~~~~~v~~~a~~aL~--nl~~~~~~~~~~~~~~g~i~ 337 (552)
+..+-..|.+.+|.+++-..+-++. ..+.+.-...+..+ ..+..++..++.|..- +++.-..+.| .-+..|+++
T Consensus 942 dlNISltAi~lfWtvsDfl~~km~S-~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr-~eVRngAvq 1019 (1610)
T KOG1848|consen 942 DLNISLTAIGLFWTVSDFLKNKMFS-TSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR-AEVRNGAVQ 1019 (1610)
T ss_pred cccccHHHHHHHHHHHHHHHhhhhc-cchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch-HHHhhhHHH
Confidence 4455556666666665432221111 11222222222222 2334455555555432 2222112222 233456666
Q ss_pred HHHHhhcC
Q 008827 338 LLVQLSKS 345 (552)
Q Consensus 338 ~L~~ll~~ 345 (552)
.+.+.+.+
T Consensus 1020 tlfri~~S 1027 (1610)
T KOG1848|consen 1020 TLFRIFNS 1027 (1610)
T ss_pred HHHHHHhh
Confidence 66666654
No 295
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=65.97 E-value=2.1e+02 Score=31.47 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=109.4
Q ss_pred HHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc-CCChh
Q 008827 315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPS 392 (552)
Q Consensus 315 aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~-~~~~~ 392 (552)
++.+++.+.+...+.+++.|++..+.+.++. .+...+..++..+.|++...+........+.--...+..++. ..+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888888888888899999999999999986 467789999999999986432111111111111122333343 33336
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhh
Q 008827 393 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA 472 (552)
Q Consensus 393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~ 472 (552)
.-..+.+.|..+....++.....+. +.+.+--..++..+... ....+.. ..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r------------------~~~~~~l~e~i~~~~~~---~~~~~~~--------~~ 624 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR------------------NSVNELLVEAISRWLTS---EIRVIND--------RS 624 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch------------------HHHHHHHHHHhhccCcc---ceeehhh--------hh
Confidence 6777777777776554321111111 11222222222222221 1112221 11
Q ss_pred HHH-HHHhhc-CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc-CCCccHHHHHHH
Q 008827 473 QSC-IIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVKLRVKT 539 (552)
Q Consensus 473 v~~-Lv~lL~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~a~~ 539 (552)
+.+ +.+++. +..+..+.-|.|++.++.. ..++..+...+.|.++.+.++-. ....++++.+..
T Consensus 625 f~~~~~~il~~s~~~g~~lWal~ti~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (699)
T KOG3665|consen 625 FFPRILRILRLSKSDGSQLWALWTIKNVLE----QNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL 690 (699)
T ss_pred cchhHHHHhcccCCCchHHHHHHHHHHHHH----cChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence 112 334444 3456788999999999995 34456777888899988888743 223344444433
No 296
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=65.97 E-value=1.9e+02 Score=31.51 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=72.0
Q ss_pred cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhH
Q 008827 378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK 457 (552)
Q Consensus 378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~ 457 (552)
.++.|..+..++=+.++.+++..+.++..+.|++-.. ++..++..|.+ ++..+-..|-+.|.++.+..|. .
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-------LL~~lVNKlGD-pqnKiaskAsylL~~L~~~HPn-M 375 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-------LLVLLVNKLGD-PQNKIASKASYLLEGLLAKHPN-M 375 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-------HHHHHHHhcCC-cchhhhhhHHHHHHHHHhhCCc-c
Confidence 5666777777788899999999999999999876554 34455566666 7778888899999999886664 4
Q ss_pred HHHHHHhhHhhhhhhHHHHHHhhcCCC--hhHHHHHHHHHHhhcC
Q 008827 458 EAVMDQLLLRAENKAQSCIIKFLQSND--SRLRTAAVWAVLNLTC 500 (552)
Q Consensus 458 ~~i~~~~~~~~~~~~v~~Lv~lL~~~~--~~~~~~a~~~l~~l~~ 500 (552)
..|+. .-+.+++-.++ ...+-.|+..|..+..
T Consensus 376 K~Vvi-----------~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 376 KIVVI-----------DEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred eeehH-----------HHHHHHHcccCccccceeehhhhhhhhHh
Confidence 44442 23445554443 3455567777777765
No 297
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.09 E-value=1.7e+02 Score=33.28 Aligned_cols=236 Identities=17% Similarity=0.104 Sum_probs=127.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC--
Q 008827 184 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-- 261 (552)
Q Consensus 184 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-- 261 (552)
-.+|..+...+.++++.+.++.|+..++.++-+. .-|...++.+..|-..++.. +..+.+-.++..|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcce
Confidence 3567777888888888888999887777766432 23455555555554333221 1223455566666652
Q ss_pred ------C----HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc--------C--CCHHHHHHHHHHHHH---
Q 008827 262 ------S----SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--------D--TSTAVQVAALGAISN--- 318 (552)
Q Consensus 262 ------~----~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--------~--~~~~v~~~a~~aL~n--- 318 (552)
+ ........++++.+.......++. |.++++...|...|- + +|.-+...-...|..
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrv-FgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfT 813 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRV-FGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFT 813 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheee-hhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHH
Confidence 1 133445556666665443455556 888888887777662 1 121111111111111
Q ss_pred hh-cCCchhHHH-------------HHhhC---------cHHHHHHh----hcCCCHHHHHHHHHHHHHhc---------
Q 008827 319 IV-VDFTTRRST-------------FIRLG---------GVKLLVQL----SKSMDSTIRLNALRALRNLI--------- 362 (552)
Q Consensus 319 l~-~~~~~~~~~-------------~~~~g---------~i~~L~~l----l~~~~~~v~~~a~~aL~~l~--------- 362 (552)
++ ...+.++.+ +.+.| .+..+.++ +-.+.-.--..|+..+-.+-
T Consensus 814 lavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntP 893 (2799)
T KOG1788|consen 814 LAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTP 893 (2799)
T ss_pred HHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccC
Confidence 11 122222221 22223 22222222 11111111112222222221
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 008827 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 430 (552)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L 430 (552)
.+.....++++..++....+++.+-...++.|...+.++.+++..+|...+..-+.| +++++..++
T Consensus 894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~g--cvellleIi 959 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAG--CVELLLEII 959 (2799)
T ss_pred CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhccc--HHHHHHHHh
Confidence 011123577888999999999988888899999999999999988887666555545 566665544
No 298
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=64.53 E-value=1.1e+02 Score=38.24 Aligned_cols=225 Identities=15% Similarity=0.095 Sum_probs=111.3
Q ss_pred HHhcCChhhHHHHHHHHHHHhhhCCCcch--h--hhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHH
Q 008827 129 IVKDRFARTRLLASLCLIVIRNASPCYLQ--D--VGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAF 202 (552)
Q Consensus 129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~--~--~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 202 (552)
-+..++.++|..|+.+++.+........+ + .-+....+..+..+-. .+++++......+- +..-+...
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~la 562 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLA 562 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhc
Confidence 55678889999998887776654321000 0 0012333333333332 23344443333221 11112222
Q ss_pred HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc
Q 008827 203 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 282 (552)
Q Consensus 203 ~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~ 282 (552)
+.+.+..+...+.... -.+++.+...++.++..++.+.-.....-.+...-.+..++-..+......-+..+......
T Consensus 563 Q~~~lr~~~~al~~~~--l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDEN--FAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred CchhHHHHHHHhhhhh--hhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 3333444444454442 45778888888888876654432222222333333333333333333333222222211110
Q ss_pred ccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 008827 283 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNL 361 (552)
Q Consensus 283 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l 361 (552)
.- . -.-...+..++..+++++..+...+..++..|+......-....+ ..++.+.+.+. .++..-|..+.+++.++
T Consensus 641 ~i-~-~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 641 LI-S-PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HH-H-hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 00 0 122234455666677888888888999999988654422222222 34444444443 35566788899999998
Q ss_pred ccc
Q 008827 362 IFL 364 (552)
Q Consensus 362 ~~~ 364 (552)
...
T Consensus 718 ~s~ 720 (2341)
T KOG0891|consen 718 ESS 720 (2341)
T ss_pred hcc
Confidence 653
No 299
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=63.26 E-value=1.8e+02 Score=29.78 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=84.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcc--hhhhhHHhHHHHHHHhcC--C----C-Cch-hchHHHHHHHhhcC
Q 008827 124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYL--QDVGIKTKLINNLLELLD--D----P-GRV-GDEASFAFSSLIAE 193 (552)
Q Consensus 124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~--~~~~~~~g~i~~Lv~ll~--~----~-~~v-~~~a~~~L~~l~~~ 193 (552)
.....+.+..+...|.+|......+.+.++... ++.+.++-+.+.+-+++. + . +.| +.-+...|+-+. .
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC-~ 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC-R 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh-C
Confidence 335667777777888888887777777665432 334667778888888886 1 1 233 333334444443 3
Q ss_pred CHHHHHHHHHhCcHHHHHHhhhcCCCChh------hHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC
Q 008827 194 KEDMQKLAFEVNGVDKLYNHLQKGSLHPR------RFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 259 (552)
Q Consensus 194 ~~~~~~~~~~~~~i~~L~~~L~~~~~~~~------~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~ 259 (552)
.|+....----+.||.|.+.+.... +++ +.+.+-.+|..++.. +.-...++..|+++.+.++-.
T Consensus 93 ~pElAsh~~~v~~IP~llev~~~~~-d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 93 VPELASHEEMVSRIPLLLEVMSKGI-DTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred ChhhccCHHHHHhhhHHHHHHHhcC-CCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHh
Confidence 3433222112356899999887663 343 667888888888876 455566778899999887554
No 300
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=62.73 E-value=49 Score=27.80 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=52.6
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC-Ccc---HHHHHHHHHHHHhh
Q 008827 471 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP-CLD---VKLRVKTALEQFNS 546 (552)
Q Consensus 471 ~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~-~~~---v~~~a~~al~~~~~ 546 (552)
.++..|.+-|.++++.++..|...+-.+..+ +.......+.....+..|.+++.++ ... |++++..-+..+..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkN---cg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKN---CGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH---SHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4456788899999999999999888888753 2233445555666788888877532 222 89998877776654
Q ss_pred h
Q 008827 547 F 547 (552)
Q Consensus 547 ~ 547 (552)
.
T Consensus 119 ~ 119 (140)
T PF00790_consen 119 A 119 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 301
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=62.43 E-value=1.2e+02 Score=27.35 Aligned_cols=142 Identities=17% Similarity=0.130 Sum_probs=91.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHHH-HHHhhcCCchhHH
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGA-ISNIVVDFTTRRS 328 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~a-L~nl~~~~~~~~~ 328 (552)
...+..+..++..+.+..|+.++...... .+...++.+-.++.+ ++..+....+.. ++.+....
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~---------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~----- 118 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKK---------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH----- 118 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG-----------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-----
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhh---------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-----
Confidence 45566788889999999998887543321 112245566666764 567776665433 33322110
Q ss_pred HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
....+.+.+.+.++++-+|..++-.+.......+ . ...+..+...+.+++..+|....|+|+.++..+
T Consensus 119 ----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~---~-----~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 119 ----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKED---F-----DELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp ----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCH---H-----HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred ----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcC---H-----HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 3566788889999999999998876655544211 1 123445566678889999999999999999998
Q ss_pred cchHHHHHhh
Q 008827 409 INSVEYIFAE 418 (552)
Q Consensus 409 ~~~~~~i~~~ 418 (552)
++.....+..
T Consensus 187 ~~~v~~~l~~ 196 (213)
T PF08713_consen 187 PDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8765544443
No 302
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=62.30 E-value=92 Score=25.96 Aligned_cols=127 Identities=18% Similarity=0.178 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch--------hH-HH----H
Q 008827 264 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT--------RR-ST----F 330 (552)
Q Consensus 264 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~--------~~-~~----~ 330 (552)
-++...+.++..++...=.... ...++.++++++. ++.........|..+..+..+ .+ .. +
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Confidence 4667778888888765211111 3577888888877 455566666666555433221 11 11 1
Q ss_pred Hh--hCcHHHHHHhhcCCC----HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827 331 IR--LGGVKLLVQLSKSMD----STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV 401 (552)
Q Consensus 331 ~~--~g~i~~L~~ll~~~~----~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L 401 (552)
.+ ..+++.+.+.+.... ......++.++..+....+ -..+.+...++.+++++.+++ .+..|+.+|
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~---~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP---IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS----HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC---HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 11 134444445444422 7788899999999877654 334555567888888885544 366666543
No 303
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.00 E-value=79 Score=31.49 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=86.2
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhH
Q 008827 291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK 370 (552)
Q Consensus 291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 370 (552)
.-.+..|+.-+.+.+.+++..|...|..+....+... ...-..+++.+..+..+.+..+|.....++-++....-++.
T Consensus 57 ~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~- 134 (393)
T KOG2149|consen 57 GLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED- 134 (393)
T ss_pred cccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-
Confidence 3456678888899999999999999987765533321 22234677888888888999999999998888755332222
Q ss_pred HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 371 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 371 ~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
........++.+...|.+..+++|..++..+..+....++
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 2333344577788888899999999999999888876544
No 304
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=59.32 E-value=2e+02 Score=28.88 Aligned_cols=219 Identities=13% Similarity=0.052 Sum_probs=105.5
Q ss_pred hhchHHHHHHHhhcCCHHHHHHHHHhC--cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH
Q 008827 179 VGDEASFAFSSLIAEKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD 256 (552)
Q Consensus 179 v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~ 256 (552)
+-..|..+++.+..+..-....--+.. .+...+..+.+++.+-.+...++++|..-- .++. +........++.
T Consensus 62 L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~~----~~~~~~~~~l~~ 136 (372)
T PF12231_consen 62 LVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSPK----IMTSDRVERLLA 136 (372)
T ss_pred HHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCCc----ccchhhHHHHHH
Confidence 456777888877644322211111111 234555556665444445556666665422 2221 222223333333
Q ss_pred hc---C--CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH---
Q 008827 257 AL---A--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS--- 328 (552)
Q Consensus 257 ~L---~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--- 328 (552)
.+ . -++..+......++.++....+..-.. ...-.+|.++..+-+....++..|...+..+....++.+.
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~--~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~ 214 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIK--HADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSK 214 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHH
Confidence 33 2 356677778888888886553332111 1123678888888787788888776666555432222211
Q ss_pred H---HHhh----C-----cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHH
Q 008827 329 T---FIRL----G-----GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ 396 (552)
Q Consensus 329 ~---~~~~----g-----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~ 396 (552)
. ..+. + ..+.+..++.+.+.....-=+|...-+.-+......-..+ ...+...-..++++|+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 215 SVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence 1 1111 2 2233555555533333333344333222211100000000 112233334567888899988
Q ss_pred HHHHHHHhh
Q 008827 397 ALALVRNLV 405 (552)
Q Consensus 397 a~~~L~~l~ 405 (552)
|..+=+.+.
T Consensus 294 A~~aW~~li 302 (372)
T PF12231_consen 294 AFKAWRRLI 302 (372)
T ss_pred HHHHHHHHH
Confidence 887666655
No 305
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=58.81 E-value=2e+02 Score=28.84 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC----CC-HHHHHHHHHHHHHhhcCC-chhHHHHHhhC
Q 008827 261 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD----TS-TAVQVAALGAISNIVVDF-TTRRSTFIRLG 334 (552)
Q Consensus 261 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~----~~-~~v~~~a~~aL~nl~~~~-~~~~~~~~~~g 334 (552)
++..|...+.+||.|+..+++.-++. +.+......+++.+.. .. ..+...=...|.-+..-. ....+.+.+.+
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~-~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~ 187 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDL-FLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELL 187 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHH-HHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 34578899999999998885544444 6677766677766531 11 122222222232222212 22334567789
Q ss_pred cHHHHHHhhcCC---------CH------HHHHHHHHHHHHhcccCChHhH-HHHHH----hhcHHHHHhhhc--CCChh
Q 008827 335 GVKLLVQLSKSM---------DS------TIRLNALRALRNLIFLAEDKCK-EEIFM----ELTASLLASLIC--DPEPS 392 (552)
Q Consensus 335 ~i~~L~~ll~~~---------~~------~v~~~a~~aL~~l~~~~~~~~~-~~i~~----~~~~~~l~~ll~--~~~~~ 392 (552)
+++.+..++.+. ++ .....++.++.|++.......+ ..-.. .+.....+..+. +.+.+
T Consensus 188 Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~e 267 (532)
T KOG4464|consen 188 GLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEE 267 (532)
T ss_pred ccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHH
Confidence 999999887652 11 2344577777787764432222 11011 111222222222 12222
Q ss_pred HHHHHHHHHHHhhc--------CCc--chHHHHHhhcCchHHHHHHHhcccCch--------hHHHHHHHHHHhhcCCCh
Q 008827 393 VQEQALALVRNLVD--------GRI--NSVEYIFAEDGIILDAVGRQLRIASKA--------EIEIQGMYVLGNVATGKE 454 (552)
Q Consensus 393 v~~~a~~~L~~l~~--------~~~--~~~~~i~~~~~~~~~~l~~~L~~~~~~--------~v~~~a~~~L~~la~~~~ 454 (552)
+-..+...|.|.-. ..+ ...+......|..++.+..+|+.+.+. +.....+.+|..++....
T Consensus 268 lhshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R 347 (532)
T KOG4464|consen 268 LHSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHR 347 (532)
T ss_pred HhhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhH
Confidence 33233333322211 111 112222233444556666666542221 222235566666665443
Q ss_pred hhHHHHHHHhhHh---------hhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 455 SHKEAVMDQLLLR---------AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 455 ~~~~~i~~~~~~~---------~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
..|...-.+++|- .+..+=.++++++...+..++.-|+-.+-.|+.
T Consensus 348 ~~Rkylr~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCK 402 (532)
T KOG4464|consen 348 VMRKYLRQQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCK 402 (532)
T ss_pred HHHHHHHHhcCCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhh
Confidence 2222222211110 112233456777777777788777777777774
No 306
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=58.63 E-value=99 Score=26.04 Aligned_cols=96 Identities=6% Similarity=0.070 Sum_probs=60.7
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHH-HHHHHh
Q 008827 386 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE-AVMDQL 464 (552)
Q Consensus 386 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~-~i~~~~ 464 (552)
+..+|+..-...+..++. -... ... ++..+.+-|.+++++.++..|+..|-.+..++-.... .|..
T Consensus 14 l~~~dw~~ileicD~In~-~~~~---~k~-------a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eias-- 80 (141)
T cd03565 14 LQSEDWGLNMEICDIINE-TEDG---PKD-------AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAK-- 80 (141)
T ss_pred CCCcCHHHHHHHHHHHhC-CCCc---HHH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHH--
Confidence 345566666666666643 1111 111 5566666666547889999999999888874433333 3333
Q ss_pred hHhhhhhhHHH-HHHhhcC---CChhHHHHHHHHHHhhc
Q 008827 465 LLRAENKAQSC-IIKFLQS---NDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 465 ~~~~~~~~v~~-Lv~lL~~---~~~~~~~~a~~~l~~l~ 499 (552)
.+++.- |++++.. .+..|+......+...+
T Consensus 81 -----k~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 81 -----KDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred -----HHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 677776 8888863 24578888888887665
No 307
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=58.02 E-value=1.7e+02 Score=27.68 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHhhcCC-------hhHHHHHHhcccHHHHHHhcCCCC----HHHHHHHHHHHHHhhcccccccchhhhcc
Q 008827 223 RFEGILLALADMCSKL-------ECCRSRCLSLQVLKLVVDALAHDS----SDVRSAACMCLRSVSRSIKNLSAGSFMNE 291 (552)
Q Consensus 223 ~~~~a~~aL~~l~~~~-------~~~~~~~~~~~~l~~lv~~L~~~~----~~v~~~a~~~L~~ls~~~~~~~~~~~~~~ 291 (552)
..+..+..|..+.... .+.|-.+.-...+|.++.-+.+++ ......++..|..++...+ ..
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~ 149 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LP 149 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------Cc
Confidence 3455566666665421 112333334457888888888776 2444566677777775411 11
Q ss_pred CcHHHHHHhhcC---CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827 292 TIVIPLVRLLDD---TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368 (552)
Q Consensus 292 ~~i~~Lv~lL~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 368 (552)
+.-..+..+-+. +..+....++..|+.--. ++ .+...+..|++++.++.+.+|...+..|..+....+.
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~- 221 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM- 221 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC-
Confidence 222223333332 234555555555553221 22 1235677899999999999999999999998765432
Q ss_pred hHHHHHHhhcHHHHHhhhcCCC
Q 008827 369 CKEEIFMELTASLLASLICDPE 390 (552)
Q Consensus 369 ~~~~i~~~~~~~~l~~ll~~~~ 390 (552)
+.. .....+..+.+++.++-
T Consensus 222 -~~~-~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 222 -RSP-HGADLISPLLRLLQTDL 241 (262)
T ss_pred -CCC-cchHHHHHHHHHhCCcc
Confidence 222 33446777888886643
No 308
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=56.97 E-value=11 Score=24.15 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=20.7
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHH
Q 008827 249 QVLKLVVDALAHDSSDVRSAACMCL 273 (552)
Q Consensus 249 ~~l~~lv~~L~~~~~~v~~~a~~~L 273 (552)
.+...+...+.++++.||.+|..+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4677788889999999999998753
No 309
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=56.47 E-value=92 Score=26.24 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 381 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~ 381 (552)
.+|+..-...|..+.. - ...- ..++..|.+-+. +.++.++..|+..|-.+..+.+...+.++.....++.
T Consensus 16 ~~dw~~ileicD~In~-~--~~~~------k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 16 SEDWGLNMEICDIINE-T--EDGP------KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CcCHHHHHHHHHHHhC-C--CCcH------HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 4566666666665532 1 1111 145666776665 4688899999999988888777778888888888886
Q ss_pred -HHhhhcC---CChhHHHHHHHHHHHhhc
Q 008827 382 -LASLICD---PEPSVQEQALALVRNLVD 406 (552)
Q Consensus 382 -l~~ll~~---~~~~v~~~a~~~L~~l~~ 406 (552)
|++++.. .+..|+..++.++.....
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 8888863 345788888888877653
No 310
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=56.38 E-value=1.2e+02 Score=26.75 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=51.6
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 323 (552)
..+|.+.+-|.....+-+.-|...+..|-......+.. -+-...+.++-..|.+.++++...++.+|..|+...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil-PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL-PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 47899999998888777777777777664431111111 123455566667778899999999999999996543
No 311
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=56.10 E-value=29 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 350 v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
.+..|+..|+.|..+- -+..|+.+|.++|..+...|..+|.+...-
T Consensus 79 s~~~Av~LLGtM~GGY------------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY------------NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp -HHHHHHHHTTS-SST------------THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred CHHHHHHHHhhccCCC------------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 3556777777765533 277888999888888888888888776543
No 312
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.40 E-value=88 Score=35.50 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=73.0
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHH
Q 008827 302 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 381 (552)
Q Consensus 302 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~ 381 (552)
+|-++++|..+...|+--+..++. .+++..-++.+=+.|++.+..||..++.+|..|-...+-..+-+.+..-.-..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 467899999999999987766664 67777777888888999999999999999999977543334555556667778
Q ss_pred HHhhh-cCCChhHHHHHHHHH
Q 008827 382 LASLI-CDPEPSVQEQALALV 401 (552)
Q Consensus 382 l~~ll-~~~~~~v~~~a~~~L 401 (552)
++.+. .+.+..|+...+..+
T Consensus 374 IVeMadrd~~~~Vrav~L~~~ 394 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLC 394 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHH
Confidence 88887 455666666555443
No 313
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=54.74 E-value=1.7e+02 Score=26.72 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCCch-hHHHHHhhCcHHHHH
Q 008827 267 SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-----DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLV 340 (552)
Q Consensus 267 ~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~g~i~~L~ 340 (552)
..+...|..++.+ +..+.. |.++.+--.+..+|. ++.+-+|..+.+.++.+..+.+. ....+....++|.++
T Consensus 118 cnaL~lLQclaSh-Petk~~-Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 118 CNALNLLQCLASH-PETKKV-FLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHhcC-cchhee-eeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3444455555655 445544 677666555666664 23567888999999999875543 345667789999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcccCCh-Hh------HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 341 QLSKSMDSTIRLNALRALRNLIFLAED-KC------KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 341 ~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~------~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
+.+..+++.-+.-|+..+..+..++.- .. |-..+..-.-+..-++...+...+...++++.-.++..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 999999999899999988887653321 00 11111111112223344556666777777776666543
No 314
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=54.10 E-value=2.4e+02 Score=28.27 Aligned_cols=133 Identities=17% Similarity=0.104 Sum_probs=83.3
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHhc---ccHHHHHHhcCCC--CHHHHHHHHHHHHHhhcccccccchhhhccCcH
Q 008827 220 HPRRFEGILLALADMCSKLECCRSRCLSL---QVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV 294 (552)
Q Consensus 220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~---~~l~~lv~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i 294 (552)
+..+..+|++.++.+.. ++.....+-+. -++...+..+.++ +..+.....++|..-..+ .. +.....+
T Consensus 59 ~~~L~~qALkll~~~l~-~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~-~~~~~~~ 131 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLY-HPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PK-IMTSDRV 131 (372)
T ss_pred chHHHHHHHHHHHHHHc-cHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----Cc-ccchhhH
Confidence 45677899999998875 44443333322 1566677777544 345656666665443222 22 3445555
Q ss_pred HHHHHhhc-----CCCHHHHHHHHHHHHHhhcCCchhHHHHHh-h-CcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 295 IPLVRLLD-----DTSTAVQVAALGAISNIVVDFTTRRSTFIR-L-GGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 295 ~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~-g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
..++..+. -++..+..+...++.++...++. .+.+ . -+++.++..+-+....+|..|...+..+.
T Consensus 132 ~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~---~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 132 ERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ---QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 56666553 24678889999999999876554 3333 2 37888888777777788888776655543
No 315
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=53.83 E-value=1e+02 Score=24.64 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=50.4
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh------cCCChhHHHHHHHHHHH
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI------CDPEPSVQEQALALVRN 403 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll------~~~~~~v~~~a~~~L~~ 403 (552)
.++..|.+-+.+.++.++..|+..|-.+..+.++.....+.....+..++++. .+.+..|+..+..++..
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 35677777788889999999999999998887777777776665555554431 12356788877766654
No 316
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=53.41 E-value=2.5e+02 Score=28.24 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=82.2
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------CCCHHHHHHHHHHHHHh
Q 008827 251 LKLVVDALAHDS-SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAVQVAALGAISNI 319 (552)
Q Consensus 251 l~~lv~~L~~~~-~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v~~~a~~aL~nl 319 (552)
-..+.+.|..+- ..-+-.+...++.|++....+. . +.....+..|+.+-+ .++..+...+..+|+|+
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~-~-~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLE-P-LTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccc-c-ccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 445666666554 4556677888999998743332 2 334444555555542 12458899999999999
Q ss_pred hcCCchhHHHHHhhCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhcccCChHhHHHHH-HhhcHHHHHhhhcC
Q 008827 320 VVDFTTRRSTFIRLGGVKLLVQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIF-MELTASLLASLICD 388 (552)
Q Consensus 320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~i~-~~~~~~~l~~ll~~ 388 (552)
+.++...+..+.+......+.+.+... ...+...=++.|.-+.. ..++.|.+++ +.+|.+.+.+.+.+
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLfllta-le~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTA-LETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH-hhHHHHHHHHHHhcccHHHHHHhhc
Confidence 999888888888887777777665432 11122222223322221 2345555554 56778888877753
No 317
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.14 E-value=2.9e+02 Score=30.32 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=80.9
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHH
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKL 200 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~ 200 (552)
..+..++.++.+.+..+...+-..+....... ++.. .+..||...-.... ..+..+|..+ ..|.- +
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~----l~~~l~~y~~~t~s--~~~~~il~~~--~~P~~-K- 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSD----REPW----LVNGLVDYYLSTNS--QRALEILVGV--QEPHD-K- 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc----chHH----HHHHHHHHHhhcCc--HHHHHHHHhc--CCccH-H-
Confidence 34667788888888877777766666554432 1112 22233333211111 1233333322 11110 1
Q ss_pred HHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Q 008827 201 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVS 277 (552)
Q Consensus 201 ~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls 277 (552)
.....|=+++.. +..|..++..|+.+....+..--.+.+..+++.|+.+|. +.+..+...|+.+|..|-
T Consensus 70 ----~~~~~l~~~~~~----~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 70 ----HLFDKLNDYFVK----PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred ----HHHHHHHHHHcC----chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 112334444443 457889999999999887888788899999999999998 556777778877777664
No 318
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.13 E-value=4.5e+02 Score=31.10 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCChhhHHHHHHH-hhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 442 GMYVLGNVATGKESHKEAVMDQ-LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 442 a~~~L~~la~~~~~~~~~i~~~-~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
++.+|+.++.-.+.++..+... -+...=..++..+-++..+.++++...|..++..+..
T Consensus 1073 ~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1073 SCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 5556666665444455544330 0000002345566666667788888888887776654
No 319
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=53.11 E-value=19 Score=28.60 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHH
Q 008827 225 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA 268 (552)
Q Consensus 225 ~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~ 268 (552)
...+..+..++. .|+....+++.|+++.|+.+|.|+|.++...
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 456777888876 4677888999999999999999998876443
No 320
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=52.81 E-value=1.4e+02 Score=34.44 Aligned_cols=229 Identities=19% Similarity=0.146 Sum_probs=122.7
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHh-----HHHHHHHhcC---CC--CchhchHHHHHHHhh
Q 008827 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTK-----LINNLLELLD---DP--GRVGDEASFAFSSLI 191 (552)
Q Consensus 122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g-----~i~~Lv~ll~---~~--~~v~~~a~~~L~~l~ 191 (552)
.+..++..+-++.+.+|.-|+..+..+........-....+.- .+-.|.++=+ ++ ..|++.++++|..+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 3444555666888899999888888887644221111111111 1111111111 11 257888899998776
Q ss_pred cCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHH---hcccHHHHHHhcCCCCHHHHHH
Q 008827 192 AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL---SLQVLKLVVDALAHDSSDVRSA 268 (552)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~---~~~~l~~lv~~L~~~~~~v~~~ 268 (552)
.+-..-. ....+..+..++..+ ..+++...+..+..... .|..+. -..+++.+++.|.+.+..++..
T Consensus 158 ~~~~~s~----~~~~~~il~q~~~q~--~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~ 227 (1549)
T KOG0392|consen 158 KHMDESL----IKETLDILLQMLRQP--NWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSV 227 (1549)
T ss_pred HhhhhHh----hHHHHHHHHHHHcCc--chhheechHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhcchHHHHH
Confidence 5432211 122345566666655 25666655555544321 122211 1246788889999999999999
Q ss_pred HHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhh----cCCch---hHHHHHhhCcHHHHHH
Q 008827 269 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV----VDFTT---RRSTFIRLGGVKLLVQ 341 (552)
Q Consensus 269 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~----~~~~~---~~~~~~~~g~i~~L~~ 341 (552)
|+..+.-......+.... .-..++..++..+..-+. ...+...+.++. ..... ..+.-.+.|.+|.+..
T Consensus 228 aa~~l~~~~s~~v~l~~~--~i~~lv~~l~~~l~~ldd--l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p 303 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVKLMVQ--KIAKLVHTLWSFLLELDD--LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWP 303 (1549)
T ss_pred HHHHhhhhhHHHHhhhHh--HHHHHHHHHHHHHHHhhh--cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHH
Confidence 998887765543222221 112333344444332221 222222232222 11100 1112233588999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccc
Q 008827 342 LSKSMDSTIRLNALRALRNLIFL 364 (552)
Q Consensus 342 ll~~~~~~v~~~a~~aL~~l~~~ 364 (552)
++++.-..++..++..+..+...
T Consensus 304 ~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 304 FLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99888778888888888877653
No 321
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=52.54 E-value=81 Score=35.00 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=67.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827 292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 371 (552)
Q Consensus 292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 371 (552)
.+...+...+.++++.+-.....++.+++.-..-..+. ...-.+.-..-....-..++......|..++...+.+.+.
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34445555566777777777788887776421110000 0111111111111122345566677788887754333344
Q ss_pred HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827 372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVD 406 (552)
Q Consensus 372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (552)
-+-+......++.++-+++.++.+.|..++.....
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 44456788899999999999999999999998874
No 322
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.26 E-value=3e+02 Score=28.82 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=71.3
Q ss_pred cHHHHHHhcCC--------CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------CCCHHHHHH
Q 008827 250 VLKLVVDALAH--------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAVQVA 311 (552)
Q Consensus 250 ~l~~lv~~L~~--------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v~~~ 311 (552)
++|.++.++.+ .+-.........++.|.++ ++++-. -+-+..+|.++..+- |.++.+|..
T Consensus 240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N-p~i~le-pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDf 317 (576)
T KOG2549|consen 240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN-PNIFLE-PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDF 317 (576)
T ss_pred HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-Cccchh-hHHHHHhhHHHHhhhhhhccCCccccchHHHHHH
Confidence 68888888864 3456667777788888877 555433 345667777777651 346789999
Q ss_pred HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 008827 312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNL 361 (552)
Q Consensus 312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l 361 (552)
|+..+..++.++...-.. +..-++..+.+.+.+. ......-++..|..|
T Consensus 318 AA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 318 AARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 999999999877654322 3344556666655554 344555566666655
No 323
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.80 E-value=6.5e+02 Score=33.20 Aligned_cols=290 Identities=16% Similarity=0.114 Sum_probs=142.0
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccch------hhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG------SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~------~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 323 (552)
.++.++..+.+.+..++.....++..+-.....+-.. .-.-.+.++.+.+++.++.+--+.-.+..|..+....
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 6888999999999999999998888774321111100 0022344555666666777777777777777666555
Q ss_pred chhHHHHH--hhCcHHHHHHhhcCCCHH--------HHHHHHHHHHHhcccCC-hHhHHHHHHhhcHHHHHhhhcCCChh
Q 008827 324 TTRRSTFI--RLGGVKLLVQLSKSMDST--------IRLNALRALRNLIFLAE-DKCKEEIFMELTASLLASLICDPEPS 392 (552)
Q Consensus 324 ~~~~~~~~--~~g~i~~L~~ll~~~~~~--------v~~~a~~aL~~l~~~~~-~~~~~~i~~~~~~~~l~~ll~~~~~~ 392 (552)
+ ...+. ....+..+...+.+...+ .+......+........ ++.+. -........++.-+.+++..
T Consensus 1065 ~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1065 P--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERA-KSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred h--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHcCCchH
Confidence 4 22222 235666666666552111 11112222222211111 11111 22345677778888899999
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhhcCch--HHHHHHHhcccCchhHHHHHHHHHHhhcCCChh---hHHHHH------
Q 008827 393 VQEQALALVRNLVDGRINSVEYIFAEDGII--LDAVGRQLRIASKAEIEIQGMYVLGNVATGKES---HKEAVM------ 461 (552)
Q Consensus 393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~--~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~---~~~~i~------ 461 (552)
|++.+...|.++.......+..++..-..+ .+.+..-+.. ..-.++..-+.++..++.-.+. ......
T Consensus 1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~-~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRA-LPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccccccc-CCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHH
Confidence 999999999999865322222222110000 1111111111 2223444444444444432221 001000
Q ss_pred HHhhHhhhhhhHHHHHHhhcCCCh----hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHH
Q 008827 462 DQLLLRAENKAQSCIIKFLQSNDS----RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRV 537 (552)
Q Consensus 462 ~~~~~~~~~~~v~~Lv~lL~~~~~----~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a 537 (552)
..+....+...+. +.+.....+. .+|..|..++.......+-+++.+.. ...+++..+.+-+..+.++..+.+
T Consensus 1221 ~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~--~r~kii~v~fk~l~~~~~Ei~~~~ 1297 (3550)
T KOG0889|consen 1221 IALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAE--LREKIIAVFFKSLYKRSSELIEVA 1297 (3550)
T ss_pred HHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhh--hhhHHHHHHHHHHcCChHHHHHHH
Confidence 0000000011111 2222222222 24666666666555433333333322 245667777777766677777777
Q ss_pred HHHHHHHhh
Q 008827 538 KTALEQFNS 546 (552)
Q Consensus 538 ~~al~~~~~ 546 (552)
..++..+..
T Consensus 1298 ~~~l~~v~~ 1306 (3550)
T KOG0889|consen 1298 LEGLRKVLA 1306 (3550)
T ss_pred HHHHHhhhh
Confidence 777766543
No 324
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=48.28 E-value=6.3e+02 Score=31.37 Aligned_cols=190 Identities=13% Similarity=0.068 Sum_probs=96.7
Q ss_pred HHHHHHHhcC-CCCchhchHHHHHHHhhcCC---HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChh
Q 008827 165 LINNLLELLD-DPGRVGDEASFAFSSLIAEK---EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 240 (552)
Q Consensus 165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~ 240 (552)
+-+.+++.-. .+..+...|...|..++..- ++...--++...+.++..++... ...++++.++.++.++....
T Consensus 1138 l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s-~~~eVrE~ILeCv~qmI~s~-- 1214 (1780)
T PLN03076 1138 LSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKS-NAVEIRELIIRCVSQMVLSR-- 1214 (1780)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH--
Confidence 3333444333 23445566666666655321 11111112334566777766655 46789999999998876421
Q ss_pred HHHHHHhcccHHHHHHhcC----CCCHHHHHHHHHHHHHhhccc-ccccchhhhccCcHHHHH----HhhcC-CCHHHHH
Q 008827 241 CRSRCLSLQVLKLVVDALA----HDSSDVRSAACMCLRSVSRSI-KNLSAGSFMNETIVIPLV----RLLDD-TSTAVQV 310 (552)
Q Consensus 241 ~~~~~~~~~~l~~lv~~L~----~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv----~lL~~-~~~~v~~ 310 (552)
..-++. |.+.+..++. +.++.+...|-..+..+.+.. +.+.. ...+....++ .+... .+.++-.
T Consensus 1215 --~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~---~~~~~F~DlV~cL~~Fa~q~~~~nISL 1288 (1780)
T PLN03076 1215 --VNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE---TETTTFTDCVNCLIAFTNSRFNKDISL 1288 (1780)
T ss_pred --Hhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc---cchhHHHHHHHHHHHHHhCcCcccccH
Confidence 111222 4445545444 556777777777776654431 11110 0123333333 33332 2455555
Q ss_pred HHHHHHHHhhcCCch---------------------------h-----HHHHHhhCcHHHHHHh---hcCCCHHHHHHHH
Q 008827 311 AALGAISNIVVDFTT---------------------------R-----RSTFIRLGGVKLLVQL---SKSMDSTIRLNAL 355 (552)
Q Consensus 311 ~a~~aL~nl~~~~~~---------------------------~-----~~~~~~~g~i~~L~~l---l~~~~~~v~~~a~ 355 (552)
.|...|.+++..... . ........++|.|..+ ..++..+||..|+
T Consensus 1289 ~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~AL 1368 (1780)
T PLN03076 1289 NAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSAL 1368 (1780)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666644211000 0 0001123456665554 5567899999999
Q ss_pred HHHHHhcc
Q 008827 356 RALRNLIF 363 (552)
Q Consensus 356 ~aL~~l~~ 363 (552)
.+|..+..
T Consensus 1369 qtLF~iL~ 1376 (1780)
T PLN03076 1369 QVLFDTLR 1376 (1780)
T ss_pred HHHHHHHH
Confidence 98877643
No 325
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=48.01 E-value=2.7e+02 Score=27.10 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=93.0
Q ss_pred cHHHHHHhhcC-C---CHHHHHHHHHHHHHhcccCChHhHHHHHHhh------------cHHHHHhhhc------CCChh
Q 008827 335 GVKLLVQLSKS-M---DSTIRLNALRALRNLIFLAEDKCKEEIFMEL------------TASLLASLIC------DPEPS 392 (552)
Q Consensus 335 ~i~~L~~ll~~-~---~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~------------~~~~l~~ll~------~~~~~ 392 (552)
++..|+.++-. . ...+|..|+.++..... .+++.+..++... ..+ |++.|- +.|+.
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~-~N~~~q~~~l~~~i~~~~~~~~~~~~~n-l~~~Ll~~~~~~~~dpy 112 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFY-NNEEGQTAFLSTLIPSYASGNSDDPIAN-LLTALLDYDSDLSLDPY 112 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHT-T-HHHHHHHHHTTSSTT--SS--SSSS--HHHHHT------SS-HH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhccCCCCcccchhhH-HHHHHHHhhccccCCHH
Confidence 44555544322 2 46789999999988877 3456777676631 112 444333 33555
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhh--c----C----chHHHHHHHhcc----cCchhHHHHHHHHHHhhcCCChhhHH
Q 008827 393 VQEQALALVRNLVDGRINSVEYIFAE--D----G----IILDAVGRQLRI----ASKAEIEIQGMYVLGNVATGKESHKE 458 (552)
Q Consensus 393 v~~~a~~~L~~l~~~~~~~~~~i~~~--~----~----~~~~~l~~~L~~----~~~~~v~~~a~~~L~~la~~~~~~~~ 458 (552)
-..-|..+|.++..++++..+.+++- + | ..++.+..+|.. ..++.++..-+..|.-...+++....
T Consensus 113 ~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~ 192 (312)
T PF04869_consen 113 RCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 55568888999998877665554332 1 1 156666665543 35778888888888888888888777
Q ss_pred HHHHHhhHhhhhhhHHHHHHhhcC---CChhHHHHHHHHHHhh
Q 008827 459 AVMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNL 498 (552)
Q Consensus 459 ~i~~~~~~~~~~~~v~~Lv~lL~~---~~~~~~~~a~~~l~~l 498 (552)
.+++ +..-++.|+..... .+..++--++..|+-.
T Consensus 193 ~FL~------~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 193 DFLS------EGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp HHHC------STTHHHHHHHHHS--TCCCHHHHHHHHHHHHHH
T ss_pred HHHc------CcchHHHHHHHhhcCCCCcchHHHHHHHHHHHH
Confidence 7776 25577888887532 3455655555555543
No 326
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=47.44 E-value=3.3e+02 Score=27.80 Aligned_cols=233 Identities=12% Similarity=0.125 Sum_probs=116.3
Q ss_pred HHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 008827 245 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 245 ~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~ 323 (552)
..+...+..|+.++.+++++=|......++++-......|. +....+...+.+++. .....-.......++.+..++
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~--~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf 206 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRS--FIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF 206 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHH--HHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc
Confidence 34556788899999999999999999999987654444443 455566666777765 344555666777777777665
Q ss_pred c-hhHHHHHhhCcHHHHHHhhcCCCHHH-HHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827 324 T-TRRSTFIRLGGVKLLVQLSKSMDSTI-RLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV 401 (552)
Q Consensus 324 ~-~~~~~~~~~g~i~~L~~ll~~~~~~v-~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L 401 (552)
. +.++. ...=....++.+.+...-.. ...-...+..++. .+|.....++ ..+++.=-..+..=+.-.+.-+
T Consensus 207 ~~plk~e-h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~-kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el 279 (409)
T PF01603_consen 207 AVPLKEE-HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE-KDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNEL 279 (409)
T ss_dssp -SS--HH-HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH-H-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHH
T ss_pred CCCCcHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-hCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHH
Confidence 4 22221 11111233334444332111 1111122222222 1221111111 1111111122222222233444
Q ss_pred HHhhcCCc-chHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 008827 402 RNLVDGRI-NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 480 (552)
Q Consensus 402 ~~l~~~~~-~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL 480 (552)
..+...-+ .....+... ++..+...+.| ++..|.+.|+....| +.... ++.+ ....++|.+...|
T Consensus 280 ~~il~~~~~~~f~~i~~~---lf~~la~ci~S-~h~qVAErAl~~w~n-----~~~~~-li~~----~~~~i~p~i~~~L 345 (409)
T PF01603_consen 280 EEILEVLPPEEFQKIMVP---LFKRLAKCISS-PHFQVAERALYFWNN-----EYFLS-LISQ----NSRVILPIIFPAL 345 (409)
T ss_dssp HHHHTT--HHHHHHHHHH---HHHHHHHHHTS-SSHHHHHHHHGGGGS-----HHHHH-HHHC----THHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHH---HHHHHHHHhCC-CCHHHHHHHHHHHCC-----HHHHH-HHHh----ChHHHHHHHHHHH
Confidence 44443322 222222221 56777777777 888999999887754 22222 2221 1234556666665
Q ss_pred cC-----CChhHHHHHHHHHHhhcC
Q 008827 481 QS-----NDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 481 ~~-----~~~~~~~~a~~~l~~l~~ 500 (552)
.. =+..+|..|..++..+..
T Consensus 346 ~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 346 YRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp SSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 43 257799999999888874
No 327
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=46.64 E-value=4.3e+02 Score=29.00 Aligned_cols=140 Identities=19% Similarity=0.189 Sum_probs=91.1
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCChHhH
Q 008827 292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCK 370 (552)
Q Consensus 292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~ 370 (552)
.-|..|+.+|++++..+.+.+...+..+.... +..+ .+..|+.+ ++..+. .++..|..+ .+|..|
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~---~~~~----l~~~l~~y~~~t~s~----~~~~il~~~---~~P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSD---REPW----LVNGLVDYYLSTNSQ----RALEILVGV---QEPHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc---chHH----HHHHHHHHHhhcCcH----HHHHHHHhc---CCccHH
Confidence 45677999999999999888888887654322 1112 24555554 333332 233334333 233111
Q ss_pred HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827 371 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 450 (552)
Q Consensus 371 ~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la 450 (552)
..+..|-+.+.. +..+..++.+|+.+....|..+..+.+.. ++..|.+.|....+..+...|+.+|..+.
T Consensus 70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~--Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTP--LFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcCh--hHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 233444455543 45778899999999999888888887766 88888888877677888888888888877
Q ss_pred CCChh
Q 008827 451 TGKES 455 (552)
Q Consensus 451 ~~~~~ 455 (552)
-.-+.
T Consensus 140 P~ip~ 144 (668)
T PF04388_consen 140 PHIPS 144 (668)
T ss_pred ccccc
Confidence 54443
No 328
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=46.59 E-value=1.5e+02 Score=23.69 Aligned_cols=72 Identities=8% Similarity=0.082 Sum_probs=50.9
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh-----h-cCCCccHHHHHHHHHHHH
Q 008827 471 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM-----V-NDPCLDVKLRVKTALEQF 544 (552)
Q Consensus 471 ~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l-----l-~~~~~~v~~~a~~al~~~ 544 (552)
.++..|.+-|.++++.++..|..+|-.+..+ +.......+.....+..+.++ . .+....||+++...+..+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN---~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKN---CGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---ccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3446777788889999999999999999863 445555666666666665543 1 234667999988877765
Q ss_pred h
Q 008827 545 N 545 (552)
Q Consensus 545 ~ 545 (552)
.
T Consensus 114 ~ 114 (115)
T cd00197 114 A 114 (115)
T ss_pred h
Confidence 4
No 329
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=46.34 E-value=2e+02 Score=26.56 Aligned_cols=130 Identities=15% Similarity=0.046 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCc------------------chHHHHHHHHhhcCChh
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESEN------------------VSGLGASIISHSCKTSL 68 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~------------------~~~~a~~~l~~~~~~~~ 68 (552)
+.+-+..+...+..+..++++. .-..+.+.++.+.+.|..-++. ....=...|..++..+.
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~-~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~ 155 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGI-KYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPN 155 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHH-HHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChh
Confidence 5777888888888888777655 3333556666666555422110 00111123444455555
Q ss_pred hHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHH-HHHhcCChhhHHHHHHHHHH
Q 008827 69 EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCII-EIVKDRFARTRLLASLCLIV 147 (552)
Q Consensus 69 ~~~~l~~~g~i~~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~-~ll~~~~~~vr~~A~~~L~~ 147 (552)
....+.+.|....+..+...+.. ..-..-.+..+=+. ..+....++ +.+.+++..+|..|.+.|..
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~-~~l~klil~~LDY~------------~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ 222 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSR-DDLLKLILSSLDYS------------VDGHPRIILSKALTSGSESIRLYATKHLRV 222 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCch-HHHHHHHHhhCCCC------------CccHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55556666666666666654211 00011122222111 122233344 47788889999999999887
Q ss_pred Hhh
Q 008827 148 IRN 150 (552)
Q Consensus 148 l~~ 150 (552)
+..
T Consensus 223 llr 225 (226)
T PF14666_consen 223 LLR 225 (226)
T ss_pred Hhc
Confidence 653
No 330
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=46.33 E-value=98 Score=25.77 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=43.7
Q ss_pred hHHHHHHHhcccCc---hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHH
Q 008827 422 ILDAVGRQLRIASK---AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 495 (552)
Q Consensus 422 ~~~~l~~~L~~~~~---~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l 495 (552)
+++.+.+.+....+ ++....++.++..+..-.+ ...+.+ .++++.+.++|.+++ ++..|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~-------~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIIN-------SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHS-------SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhcc-------HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 56777777765333 7888899999998876332 444554 678899999996544 577777664
No 331
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=46.26 E-value=1.2e+02 Score=25.61 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=42.4
Q ss_pred CchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc
Q 008827 77 GVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY 155 (552)
Q Consensus 77 g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~ 155 (552)
..-+.+..+|.+ +.++|..|+.|+..- .++.. ..+-..+-.++++.. .|.. |..+.......
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l---------~pY~d~L~~Lldd~~--frde----L~~f~~~~~~~ 79 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYL---------TPYKDNLENLLDDKT--FRDE----LTTFNLSDESS 79 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHH---------HhHHHHHHHHcCcch--HHHH----HHhhcccCCcC
Confidence 344567788886 679999999999873 22222 112234445555432 2221 22222222111
Q ss_pred chhhhhHHhHHHHHHHhc
Q 008827 156 LQDVGIKTKLINNLLELL 173 (552)
Q Consensus 156 ~~~~~~~~g~i~~Lv~ll 173 (552)
..+..=+..++|.++++|
T Consensus 80 ~I~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 80 VIEEEHRPELMPVVLRIL 97 (141)
T ss_pred CCCHHHHhHHHHHHHHHH
Confidence 122333467888888887
No 332
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=45.46 E-value=2.9e+02 Score=26.72 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=59.9
Q ss_pred hCcHHHHHHhhcCC--CHHHHHHHHHHHHHhcccCCh-HhHHHHHHhhcHHHHHhhhcCC---ChhHHHHHHHHHHHhhc
Q 008827 333 LGGVKLLVQLSKSM--DSTIRLNALRALRNLIFLAED-KCKEEIFMELTASLLASLICDP---EPSVQEQALALVRNLVD 406 (552)
Q Consensus 333 ~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~i~~~~~~~~l~~ll~~~---~~~v~~~a~~~L~~l~~ 406 (552)
.|.+..+++.+..+ +...|.--..++-.+.++.++ ..+.-+.+.|.++.++.-+-++ +..+.+....+|+.+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 47888888877654 456677777888888887765 4566677888999999876544 34688889999999999
Q ss_pred CCcch
Q 008827 407 GRINS 411 (552)
Q Consensus 407 ~~~~~ 411 (552)
++++.
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 87653
No 333
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=45.22 E-value=1.5e+02 Score=25.15 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 439 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 439 ~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
+..|...|+.|-.|.. ++.|+.+|.++|..+...|+.+|.+...
T Consensus 80 ~~~Av~LLGtM~GGYN------------------V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGGYN------------------VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SSTT------------------HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCCCc------------------HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 5567777777775532 3678999999999999999999998775
No 334
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=44.34 E-value=4.4e+02 Score=28.46 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=40.6
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHH
Q 008827 474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542 (552)
Q Consensus 474 ~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~ 542 (552)
..+-.+|+.+++.+|.+.-.+++-++.. + + ...+++.|-+..+|++.+|.-.+..|++
T Consensus 643 R~f~h~l~yge~~iRravPLal~llsvS---N-P-------q~~vlDtLsk~shd~D~eva~naIfamG 700 (878)
T KOG2005|consen 643 RHFGHLLHYGEPHIRRAVPLALGLLSVS---N-P-------QVNVLDTLSKFSHDGDLEVAMNAIFAMG 700 (878)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhccC---C-C-------cchHHHHHHHhccCcchHHHHHHHHHhc
Confidence 4555677788888888888888877641 1 1 2355777888888888887777766664
No 335
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=42.59 E-value=89 Score=25.23 Aligned_cols=38 Identities=26% Similarity=0.165 Sum_probs=30.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHH
Q 008827 293 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFI 331 (552)
Q Consensus 293 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~ 331 (552)
+++.|+.-|.|++++|...|...|...+.+. ...+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5788999999999999999999999988765 3333443
No 336
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.57 E-value=5.2e+02 Score=28.74 Aligned_cols=124 Identities=18% Similarity=0.123 Sum_probs=77.6
Q ss_pred HHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC----hhHHH
Q 008827 168 NLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL----ECCRS 243 (552)
Q Consensus 168 ~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~----~~~~~ 243 (552)
.|.+-++.++.++..+-++|..... +.|-.-.+++++.++..++.+|.+|.-++.+.++.+ ++...
T Consensus 10 ~l~qTl~pdps~rk~aEr~L~~~e~----------q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 10 YLLQTLSPDPSVRKPAERALRSLEG----------QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHhcCCCCCccCchHHHHHHHhcc----------CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 3444454456777777777665432 234445678888877667889999999998887621 11111
Q ss_pred HHHh---cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCH
Q 008827 244 RCLS---LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 306 (552)
Q Consensus 244 ~~~~---~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 306 (552)
.+.+ ..+-..++.++-+....++..--.+|..+++..=.-++ ...+|.|+.-++..|-
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kW-----ptLl~dL~~~ls~~D~ 140 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKW-----PTLLPDLVARLSSGDF 140 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhh-----HHHHHHHHhhccccch
Confidence 2222 12445577788788888999888999888865211122 2456667777776554
No 337
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=42.29 E-value=3.1e+02 Score=26.03 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=14.3
Q ss_pred ChhHHHHHHHHHHHhhcC
Q 008827 390 EPSVQEQALALVRNLVDG 407 (552)
Q Consensus 390 ~~~v~~~a~~~L~~l~~~ 407 (552)
|..+.+.++.+++|+..-
T Consensus 133 d~~ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAI 150 (266)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 456888899999999865
No 338
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=41.91 E-value=42 Score=18.87 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhcC
Q 008827 438 IEIQGMYVLGNVAT 451 (552)
Q Consensus 438 v~~~a~~~L~~la~ 451 (552)
|+..++++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57788999998864
No 339
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=41.73 E-value=2e+02 Score=23.61 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH-HhHHHHHHHhc
Q 008827 98 ESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLELL 173 (552)
Q Consensus 98 ~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~g~i~~Lv~ll 173 (552)
.-+..+++.++.... .....|.+-+++.++.|+..++++|..++..++...+..... ...|..+.++=
T Consensus 23 ~Eia~~t~~s~~~~~--------ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~ 91 (122)
T cd03572 23 EEIAKLTRKSVGSCQ--------ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYK 91 (122)
T ss_pred HHHHHHHHcCHHHHH--------HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcC
Confidence 345555555433332 345567778888999999999999999999876544433333 23455544443
No 340
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=40.22 E-value=1.6e+02 Score=29.21 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=64.0
Q ss_pred cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-hHHHHHHHhh
Q 008827 387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-HKEAVMDQLL 465 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~ 465 (552)
+.+++.+...++..+++=..+..+ ++..+.+=|++ .++.|...|+..+..+...+.. .+..|-.
T Consensus 22 T~enW~~IlDvCD~v~~~~~~~kd-----------~lk~i~KRln~-~dphV~L~AlTLlda~~~NCg~~~r~EVsS--- 86 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDPDGGKD-----------CLKAIMKRLNH-KDPHVVLQALTLLDACVANCGKRFRLEVSS--- 86 (462)
T ss_pred ccccHHHHHHHHHhhcCCCcccHH-----------HHHHHHHHhcC-CCcchHHHHHHHHHHHHHhcchHHHHHHhh---
Confidence 345667766666665544433222 45566666777 8999999999999998875543 3444443
Q ss_pred HhhhhhhHHHHHHhhc-CCChhHHHHHHHHHHhhc
Q 008827 466 LRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 466 ~~~~~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~ 499 (552)
.++..-|..++. +..+.|+..-..++.+.+
T Consensus 87 ----r~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 87 ----RDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred ----hhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 677777888888 667888888777777666
No 341
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=40.11 E-value=9.2e+02 Score=30.93 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=87.2
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 368 (552)
...+.+..++..+.++.-.++..+...+++++..++...-..+..-.+..+-++-.+.-..+......-+..+.. ..+.
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~-~~~~ 640 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELII-SSPV 640 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHH-HHHH
Confidence 445556667777788888999999999999887555322222222222223233222222222222221111111 0110
Q ss_pred hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHh
Q 008827 369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 448 (552)
Q Consensus 369 ~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~ 448 (552)
.-...+ ...+..++..+.+++..+...+...++.|+...-+.......+ .++.+.+.+....+...+..+.+++++
T Consensus 641 ~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~---~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 641 LISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDE---LFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccch---HHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 000111 1134566666777888888888888888885533222111221 466666666655677788889999999
Q ss_pred hcCCC
Q 008827 449 VATGK 453 (552)
Q Consensus 449 la~~~ 453 (552)
+....
T Consensus 717 l~s~~ 721 (2341)
T KOG0891|consen 717 LESST 721 (2341)
T ss_pred hhccc
Confidence 88643
No 342
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=40.11 E-value=53 Score=18.78 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC
Q 008827 136 RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD 175 (552)
Q Consensus 136 ~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~ 175 (552)
.+|..|+..|.++.. ..+++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~~------------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD------------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC------------HhHHHHHHHHhcC
Confidence 578899999987733 2366777777653
No 343
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=39.50 E-value=3.2e+02 Score=28.66 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=84.9
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchh---------chHHHHHHHhhc
Q 008827 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVG---------DEASFAFSSLIA 192 (552)
Q Consensus 122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~---------~~a~~~L~~l~~ 192 (552)
+...|.+.+-+.++..|..|+..|..=+. -+..+|.++.++.+...+- ......+..|.
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~TDsG-----------L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl- 275 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLETDSG-----------LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL- 275 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCcc-----------HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-
Confidence 44556677778888888888877653111 1347888888887542211 12222222232
Q ss_pred CCHHHHHHHHHhCcHHHHHHhhhcCC--------CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC--C
Q 008827 193 EKEDMQKLAFEVNGVDKLYNHLQKGS--------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--S 262 (552)
Q Consensus 193 ~~~~~~~~~~~~~~i~~L~~~L~~~~--------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~--~ 262 (552)
+++.+.---+-+..+|.++.++-... .+..+|.-|+..+..+|.+-...... ....++..+.+.+.+. .
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~ 354 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP 354 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 33333222223456777777664432 23558888999999888753333222 3445666677766654 5
Q ss_pred HHHHHHHHHHHHHhhc
Q 008827 263 SDVRSAACMCLRSVSR 278 (552)
Q Consensus 263 ~~v~~~a~~~L~~ls~ 278 (552)
....+.+...|..|..
T Consensus 355 ~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 355 LSTHYGAIAGLSELGH 370 (576)
T ss_pred chhhhhHHHHHHHhhh
Confidence 6778888888877765
No 344
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.64 E-value=4.9e+02 Score=27.37 Aligned_cols=103 Identities=15% Similarity=0.237 Sum_probs=64.3
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC--CCHHHHHHHHHHHHHhhccccccc
Q 008827 207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLS 284 (552)
Q Consensus 207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~ 284 (552)
+......++.++.+.+..++++..+..++.+-+. .+...+|.+++.+.. ....+++.++..++.++.-.+..
T Consensus 389 lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~-----~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~- 462 (559)
T KOG2081|consen 389 LKQMYIRLKENNASWEEVEAALFILRAVAKNVSP-----EENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH- 462 (559)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhccCCc-----cccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC-
Confidence 3334444555445678889999999998864221 244578888888863 34569999999999997653322
Q ss_pred chhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhc
Q 008827 285 AGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVV 321 (552)
Q Consensus 285 ~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~ 321 (552)
...+.++++++.. ...+....++.+..+++.
T Consensus 463 ------p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 463 ------PELLEPVLRYIRQGLQLKRLASAAALAFHRICS 495 (559)
T ss_pred ------cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 2234444444431 112266666666666664
No 345
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.26 E-value=2.1e+02 Score=29.57 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=69.4
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcH
Q 008827 300 LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 379 (552)
Q Consensus 300 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~ 379 (552)
.|..+|+.+-...|..|-. ..+.. + .++..|.+.+.+.++.++..|+..|-.+..+.+...+..|.+..++
T Consensus 13 ~l~~pDWa~NleIcD~IN~-~~~~~--~------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINS-TEGGP--K------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHHHHHHHhc-CccCc--H------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4556777776666666622 11111 1 4677788888888889999999888777766666678888888888
Q ss_pred HHHHhhhcC--CChhHHHHHHHHHHHh
Q 008827 380 SLLASLICD--PEPSVQEQALALVRNL 404 (552)
Q Consensus 380 ~~l~~ll~~--~~~~v~~~a~~~L~~l 404 (552)
+-++.+.+. .+..||+.++.+|..-
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHH
Confidence 888888864 5778999999888543
No 346
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.93 E-value=7.6e+02 Score=29.37 Aligned_cols=147 Identities=11% Similarity=0.076 Sum_probs=85.2
Q ss_pred hcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhh
Q 008827 377 LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH 456 (552)
Q Consensus 377 ~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~ 456 (552)
+++|+|..=|.+.+..++..|..+++.+......... +...-++..+..-+.. ..++|+..+.....++-..++..
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~---~~~~~~~~~fl~r~~D-~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS---ETYDDLWSAFLGRFND-ISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc---ccchHHHHHHHHHhcc-CChhhhhhHHHHhHHHHhcCchh
Confidence 5788888888899999999999999999865432111 1111134444444444 67788888777776666555543
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHH
Q 008827 457 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR 536 (552)
Q Consensus 457 ~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 536 (552)
..... ....+- ..+.|+++|.....++.... .......+... .+...-+.+.|....||..
T Consensus 335 ~~~~~----------~~~~l~--~~~~D~~~rir~~v~i~~~~------v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~ 395 (1266)
T KOG1525|consen 335 AKAST----------ILLALR--ERDLDEDVRVRTQVVIVACD------VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQ 395 (1266)
T ss_pred hhHHH----------HHHHHH--hhcCChhhhheeeEEEEEee------hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHH
Confidence 32221 111222 23455555555433332222 11222233333 5555666677777889988
Q ss_pred HHHHHHHHhh
Q 008827 537 VKTALEQFNS 546 (552)
Q Consensus 537 a~~al~~~~~ 546 (552)
|..-|.++.+
T Consensus 396 Am~~LaqlYk 405 (1266)
T KOG1525|consen 396 AMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 347
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=36.73 E-value=2e+02 Score=28.35 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=42.9
Q ss_pred chHHHHHHHHhhcCChhhHHHHHhcC--chHHHHHhhcC----CHHHHHHHHHHHHHHhcCCh
Q 008827 52 VSGLGASIISHSCKTSLEQKLLFDAG--VLKRLTSLLGG----SLIQRDASLESIATIFKNNP 108 (552)
Q Consensus 52 ~~~~a~~~l~~~~~~~~~~~~l~~~g--~i~~L~~lL~~----~~~v~~~al~~L~~l~~~~~ 108 (552)
++..|..++.++.........+...+ .+..|+.++.. ...+|..|+.+|..|+....
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 34556666666666666666777776 88999999985 35899999999999987653
No 348
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=36.48 E-value=5e+02 Score=26.80 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhhcCC-hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh
Q 008827 222 RRFEGILLALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 300 (552)
Q Consensus 222 ~~~~~a~~aL~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l 300 (552)
..|-.+.++|+.++..- +..... -.-+.|+.+|++.+..-|..++.++...+......... ..-..+.+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~----~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~-~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQE----IFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPS-PPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHH----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCC-ccHHHHHHHHHHH
Confidence 35778889999887631 111111 12237899999999999999999999887764322211 0012445667777
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827 301 LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 335 (552)
Q Consensus 301 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~ 335 (552)
|.++.+..-.+....+..+-.++......+.+.|.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77544333333333333333333333334444555
No 349
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=35.50 E-value=26 Score=27.76 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchH
Q 008827 11 VDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSG 54 (552)
Q Consensus 11 ~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~ 54 (552)
....++.+..++..|.-. +.+++-++++.|+.||..++.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LY-p~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELY-PELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHH-HHHHHcCCHHHHHHHHCCCCcceeh
Confidence 356778888888888665 5667889999999999987776644
No 350
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.31 E-value=99 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=30.3
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHH
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQK 71 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~ 71 (552)
=+|+.|+.=|.+++++|...|..+|.+.|..+..-.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le 43 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLE 43 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHH
Confidence 367889999989999999999999999998764433
No 351
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=33.77 E-value=3.4e+02 Score=24.06 Aligned_cols=76 Identities=13% Similarity=0.040 Sum_probs=48.4
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCC-hhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhh
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKT-SLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV 111 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~-~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~ 111 (552)
.-+|.+++=|...+..-+..|.+-+..+... ...+..=+--..|.+|..-|.+ ++++...++.+|..|+...+.+.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567788888777777777777766665443 2222211112345566666665 67899999999999976554443
No 352
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=33.58 E-value=2.3e+02 Score=22.12 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC
Q 008827 13 AGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG 88 (552)
Q Consensus 13 ~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~ 88 (552)
+|++-+..=+........++. ....+..|+.-++.++....+.+...+..+.+.+.....+.+.|+++.|.++=..
T Consensus 6 RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~ 82 (98)
T PF14726_consen 6 RALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPN 82 (98)
T ss_pred HHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhc
Confidence 344444333334444434555 2334566777777777778999999999999888888888999998886655443
No 353
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=33.35 E-value=94 Score=29.97 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=44.9
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCC---C-------CHHHHHHHHHCCcHHHHHhhhc
Q 008827 470 NKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP---G-------SSGRLVKLHDAGIVSHVKNMVN 527 (552)
Q Consensus 470 ~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~---~-------~~~~~~~l~~~g~~~~L~~ll~ 527 (552)
..++..++.-|.+++...|..|+.+|.-++....+ . ...+...+++.|++++|.+++.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45567888899999999999999999999863211 1 2345667889999999999875
No 354
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=33.31 E-value=4.9e+02 Score=25.77 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC----------CChhHHHHHHHHHHhhcCCCCCCC
Q 008827 437 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS----------NDSRLRTAAVWAVLNLTCSSSPGS 506 (552)
Q Consensus 437 ~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~----------~~~~~~~~a~~~l~~l~~~~~~~~ 506 (552)
......+..+..|..+..-+.+..+ +.++|.++.++-+ ++..+|..|+..+..++..-+...
T Consensus 232 ~~L~~lm~~v~ALl~N~~l~le~Yl--------h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y 303 (343)
T cd08050 232 ALLIYLMRMVRALLDNPNLHLEPYL--------HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY 303 (343)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHhH--------HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344444555555544433344444 4566677765532 235799999999999985322111
Q ss_pred HHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCCC
Q 008827 507 SGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSL 551 (552)
Q Consensus 507 ~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~~ 551 (552)
..-.. .+...+.+.+.|+..-.-. -.-|+..+..++.+-
T Consensus 304 ~~l~~-----ri~~tl~k~l~d~~~~~~~-~YGAi~GL~~lG~~~ 342 (343)
T cd08050 304 NTLQP-----RITRTLLKALLDPKKPLTT-HYGAIVGLSALGPEA 342 (343)
T ss_pred CcHHH-----HHHHHHHHHHcCCCCCcch-hhHHHHHHHHhCccC
Confidence 11111 1233555544443332211 356666666666543
No 355
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=33.06 E-value=1.8e+02 Score=26.26 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=40.3
Q ss_pred HHHHHHHhCcHHHHHHhhhcCCCC----------------hhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC
Q 008827 197 MQKLAFEVNGVDKLYNHLQKGSLH----------------PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH 260 (552)
Q Consensus 197 ~~~~~~~~~~i~~L~~~L~~~~~~----------------~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~ 260 (552)
.++.+.+.|.+..++++|+.+... .++...+...|..+|.++..++..+.+. ++.+...+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 455677788888888888765321 1344566777777777766665555442 2222222222
Q ss_pred CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC
Q 008827 261 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD 303 (552)
Q Consensus 261 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 303 (552)
.....-..+..++..+-++...++.. +. ...+..++.++..
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~-i~-e~~I~~~i~ll~~ 153 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCES-IS-EEHIEKFIELLRK 153 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT------------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHH-hh-HHHHHHHHHHHHH
Confidence 11111123444455454443444444 22 2335666666643
No 356
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.73 E-value=47 Score=32.35 Aligned_cols=65 Identities=15% Similarity=-0.011 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh
Q 008827 183 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS 247 (552)
Q Consensus 183 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 247 (552)
..+.++++....++.+..+.+.||++.+++-..-.+.+|-+++-...++..|..++.++++.+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 34577888888888888899999999887644433346889999999999999888777665543
No 357
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=30.25 E-value=7.9e+02 Score=27.22 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhcCCCCcchHHHHHHHHhhcC
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLNNESENVSGLGASIISHSCK 65 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~ 65 (552)
+.+..-...|||++++...-.- .-++ ++..+-.+...+.-..++....++.+++.+|-
T Consensus 205 ~~k~~~eiIrClka~mNn~~Gl-~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalci 263 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAFMNNKFGL-VLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCI 263 (1102)
T ss_pred HHHHHHHHHHHHHHHhccccce-eeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHhe
Confidence 3455667788999998776544 2333 55567777777777778888999999998884
No 358
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.92 E-value=3.1e+02 Score=28.42 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=61.1
Q ss_pred hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHH-HHHHH
Q 008827 385 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE-AVMDQ 463 (552)
Q Consensus 385 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~-~i~~~ 463 (552)
.+..+|+.+-...+..+..--.+.++ ++..+.+-+++ .++.++..|+.+|--+...+..... .|.+
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~e-----------AvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh~~Va~- 79 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPKE-----------AVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFHLQVAS- 79 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcHH-----------HHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHHHHHHH-
Confidence 34566766666666555443333222 56666677777 7789999999988877765544443 3433
Q ss_pred hhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHH
Q 008827 464 LLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVL 496 (552)
Q Consensus 464 ~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~ 496 (552)
.+++.-+|...+.. +..||..+...|-
T Consensus 80 ------k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 80 ------KEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred ------HHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 78888888877654 6789988877774
No 359
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.79 E-value=8.1e+02 Score=27.24 Aligned_cols=274 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred cHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhh--hccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch
Q 008827 250 VLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSF--MNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT 325 (552)
Q Consensus 250 ~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~--~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~ 325 (552)
....+..++++. +..|+.+++.++.-+.+.-.-..+. | .-......+.+++. -+.-+.+......++.+.....+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds-Flp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS-FLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh-hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHhh--CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChh---HHHHHHHH
Q 008827 326 RRSTFIRL--GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPS---VQEQALAL 400 (552)
Q Consensus 326 ~~~~~~~~--g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~---v~~~a~~~ 400 (552)
........ ..+|.|.+--+ +.+-+|.+.+.+|.|+...-. .+....-...++.+---.+-++|+ ..+.++.+
T Consensus 606 ~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg--~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeL 682 (978)
T KOG1993|consen 606 HIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALG--AQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMEL 682 (978)
T ss_pred hhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhc--cCCccchHHHHHHHHHhcCCCCCceeehhhhHHHH
Q ss_pred HHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 008827 401 VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 480 (552)
Q Consensus 401 L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL 480 (552)
=.....+.+......+. +++.+..+++- ..+..+..-.-+=+.+--.++....... .|+...+..++
T Consensus 683 W~~~L~n~~~l~p~ll~----L~p~l~~~iE~-ste~L~t~l~Ii~sYilLd~~~fl~~y~--------~~i~k~~~~~l 749 (978)
T KOG1993|consen 683 WLTTLMNSQKLTPELLL----LFPHLLYIIEQ-STENLPTVLMIISSYILLDNTVFLNDYA--------FGIFKKLNDLL 749 (978)
T ss_pred HHHHHhcccccCHHHHH----HHHHHHHHHHh-hhhhHHHHHHHHHHHHhhccHHHHHHHH--------HHHHHHHHHHH
Q ss_pred cCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh--hhcCCCccHHHHHHHHHHHHh
Q 008827 481 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN--MVNDPCLDVKLRVKTALEQFN 545 (552)
Q Consensus 481 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~--ll~~~~~~v~~~a~~al~~~~ 545 (552)
.+-..+-....+..+..+. .+.+-...+...++++.+.. +.+++.|-+--.-...+.+++
T Consensus 750 ~dvr~egl~avLkiveili-----~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 750 DDVRNEGLQAVLKIVEILI-----KTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS 811 (978)
T ss_pred HHhhHHHHHHHHHHHHHHH-----hhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH
No 360
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=28.25 E-value=5.9e+02 Score=25.55 Aligned_cols=73 Identities=10% Similarity=0.199 Sum_probs=54.8
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc-CCCccHHHHHHHHHHHHhh
Q 008827 471 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 471 ~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~a~~al~~~~~ 546 (552)
+.+..|.+-|.+.|+.|...|...+..+..|. |.. .+..+........|..+++ ...+.|+++....+..+++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NC--g~~-~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANC--GKR-FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc--chH-HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 44578889999999999999999998888642 332 3455566677788888887 5667888887777777665
No 361
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.43 E-value=1.7e+02 Score=22.43 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 008827 260 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALGAISNI 319 (552)
Q Consensus 260 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl 319 (552)
++++.+|..|+..+..+++..+..... ....+...+.+.+.|+ ......-|...|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~--L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPT--LQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999998765443322 4456677777777654 456667777777665
No 362
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=27.15 E-value=7.4e+02 Score=25.88 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=38.3
Q ss_pred hhhhHHHHHHhhc-CCChhHHHHHHHHHHhhcCCCC---------CCCHHHHHHHHHCCcHHHHHhh
Q 008827 469 ENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSS---------PGSSGRLVKLHDAGIVSHVKNM 525 (552)
Q Consensus 469 ~~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~~~~---------~~~~~~~~~l~~~g~~~~L~~l 525 (552)
+.++++.|+.+|. +.++.++.+|+..|+.++.-.. -|..+-...|.....+..|...
T Consensus 60 ~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~ 126 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDI 126 (475)
T ss_pred HhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHH
Confidence 4789999999997 3467788999988877754210 1223445666666666666664
No 363
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.72 E-value=1.7e+02 Score=22.48 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNL 361 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l 361 (552)
+++..+|+.|+..|..++..+...- .-++..+...+.+.+.++ +.....-|+..|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999997655422 122335667777777654 455677788888877
No 364
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=26.46 E-value=5.6e+02 Score=24.25 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=47.3
Q ss_pred hhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827 469 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 469 ~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~ 548 (552)
+...+..|..+|..+-+-+|......|..+....+-..+ .....+.+|.+++++ +.-..|...|..+-..+
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~------~~~dlispllrlL~t---~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP------HGADLISPLLRLLQT---DLWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC------cchHHHHHHHHHhCC---ccHHHHHHHHHHHHhhc
Confidence 356667899999988899999999999988853221111 344578999999974 22234455555544433
No 365
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.13 E-value=6.7e+02 Score=25.20 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=73.0
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 329 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 329 (552)
-+..++..+++.+..+|..|..-|..+-.+.+..-+. .-..+++.+..+.-|.+..+|......+-++..........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~--~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS--HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH--HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 4777888999999999999988777664442222111 12344555666666788888888888887765433222211
Q ss_pred HHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh
Q 008827 330 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 367 (552)
Q Consensus 330 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 367 (552)
....=..+.+...+.+..+.+|.-++..|.-+...-+|
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 11111234444456667788999999888887765444
No 366
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=25.95 E-value=5e+02 Score=23.49 Aligned_cols=138 Identities=11% Similarity=0.026 Sum_probs=83.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHH-HHHHhhcCCchhHHHHH
Q 008827 254 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALG-AISNIVVDFTTRRSTFI 331 (552)
Q Consensus 254 lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~-aL~nl~~~~~~~~~~~~ 331 (552)
+-.+.+++..+.|..|+..+...... ...+-++.+..++.+ ++.++....+. .++.+....+
T Consensus 51 ~~~Lw~~~~~E~r~~al~~l~~~~~~---------~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~------- 114 (208)
T cd07064 51 VLELWQQPEREYQYVAIDLLRKYKKF---------LTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYP------- 114 (208)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCCh-------
Confidence 44566777788999888877654221 122335666667764 34555544333 2333322221
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch
Q 008827 332 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS 411 (552)
Q Consensus 332 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 411 (552)
...+.+.+...+++.-.|..|+-+........+. ......+..++.+++.-|+...-|+|+.++..+++.
T Consensus 115 --~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~--------~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~ 184 (208)
T cd07064 115 --EFEPVMDEWSTDENFWLRRTAILHQLKYKEKTDT--------DLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDW 184 (208)
T ss_pred --hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH--------HHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHH
Confidence 2246777889999999999988665444433221 112334555666777778888899999999988765
Q ss_pred HHHHHh
Q 008827 412 VEYIFA 417 (552)
Q Consensus 412 ~~~i~~ 417 (552)
+...++
T Consensus 185 V~~fl~ 190 (208)
T cd07064 185 VRDFVA 190 (208)
T ss_pred HHHHHH
Confidence 444333
No 367
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.74 E-value=2.8e+02 Score=24.52 Aligned_cols=72 Identities=24% Similarity=0.214 Sum_probs=51.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccc-CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827 337 KLLVQLSKSMDSTIRLNALRALRNLIFL-AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 415 (552)
Q Consensus 337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 415 (552)
+.+.+...++++-+|..+...+...... .. -...++.+-.++.+++..||....|+|+.++..+++.+...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETD--------FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 6777889999999999988777766543 11 11234455556667888899999999999998877654433
Q ss_pred H
Q 008827 416 F 416 (552)
Q Consensus 416 ~ 416 (552)
+
T Consensus 180 l 180 (197)
T cd06561 180 L 180 (197)
T ss_pred H
Confidence 3
No 368
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.03 E-value=1.2e+02 Score=29.20 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=43.8
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch--------------hHHHHHhhCcHHHHHHhhcC
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT--------------RRSTFIRLGGVKLLVQLSKS 345 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~--------------~~~~~~~~g~i~~L~~ll~~ 345 (552)
.+..++..++.-|.+++...|..|+.+|.+++.+.-. +...+.+.|+++.+++++..
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4567788899999999999999999999999876421 11245667888888888764
No 369
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.21 E-value=3.3e+02 Score=30.70 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=59.9
Q ss_pred HHHhhcC-CHHHHHHHHHHHHHH---hcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcch
Q 008827 82 LTSLLGG-SLIQRDASLESIATI---FKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQ 157 (552)
Q Consensus 82 L~~lL~~-~~~v~~~al~~L~~l---~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~ 157 (552)
-..+|.+ +-.+|.+++.+|..- ...+++.....+ ...-+.++.-++.+++-+-..|..|+.+++....+..+
T Consensus 808 ~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv----hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 808 GIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV----HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH----HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444555 457889999988652 222333322222 34667888899999999999999999999987765444
Q ss_pred hhhhHHhHHHHHHHhcC
Q 008827 158 DVGIKTKLINNLLELLD 174 (552)
Q Consensus 158 ~~~~~~g~i~~Lv~ll~ 174 (552)
.. +...++|.+-.++.
T Consensus 884 sR-~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 884 SR-FLEDVLPWLKHLCQ 899 (1014)
T ss_pred HH-HHHHHHHHHHHHHH
Confidence 33 34558888888775
No 370
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=24.08 E-value=9.1e+02 Score=25.89 Aligned_cols=134 Identities=16% Similarity=0.084 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHH
Q 008827 89 SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN 168 (552)
Q Consensus 89 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~ 168 (552)
++.+|.-|...|+.-+..-|++... ..++...--++.|.+..+|....+.+..++...+....-.......-..
T Consensus 288 ~d~IRv~c~~~L~dwi~lvP~yf~k------~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 288 DDVIRVLCSMSLRDWIGLVPDYFRK------ILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHh------hhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3567777777777755555555322 1233333336789999999999999999998776432111223556777
Q ss_pred HHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhc
Q 008827 169 LLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS 236 (552)
Q Consensus 169 Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~ 236 (552)
+++++. +.+-||..+...+..+..- ...+...+-....++-+.. |+-++.....+..+|.
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr~l------g~L~~SeIlIvsscmlDi~--pd~r~~~~E~v~~icK 422 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLRIL------GVLSSSEILIVSSCMLDII--PDSRENIVESVESICK 422 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHh------cccchhHHHHHHHHHhcCC--CcchHHHHHHHHHHHH
Confidence 788887 3334676666666554321 1112223334444444443 3334445555555554
No 371
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.61 E-value=73 Score=31.13 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhccc
Q 008827 226 GILLALADMCSKLECCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSI 280 (552)
Q Consensus 226 ~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~ 280 (552)
+..+.++++|...++.++.+.+.||++.++.-.. +.+|-+++...-|++.|..+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 3677999999999999999999999999987654 668899999999999998764
No 372
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=22.98 E-value=3.7e+02 Score=21.00 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhh
Q 008827 136 RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 214 (552)
Q Consensus 136 ~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L 214 (552)
++|.-|..-+-+-..++--...+-......+..|++-++ ++.....++...+..++...+.. ....+-|+...|-+ +
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~-~~l~~iG~~~fL~k-l 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAA-QILRDIGAVRFLSK-L 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHH-HHHHHccHHHHHHH-H
Confidence 345555544444333322112222334567777777777 44456788888898988766553 55667787777555 5
Q ss_pred hcC
Q 008827 215 QKG 217 (552)
Q Consensus 215 ~~~ 217 (552)
+..
T Consensus 80 r~~ 82 (98)
T PF14726_consen 80 RPN 82 (98)
T ss_pred Hhc
Confidence 543
No 373
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=22.89 E-value=6.2e+02 Score=23.50 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=67.9
Q ss_pred hcCCCHHHHHHHHHHHHHhccc-----CChHhHHHHHH--hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC----Cc--
Q 008827 343 SKSMDSTIRLNALRALRNLIFL-----AEDKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDG----RI-- 409 (552)
Q Consensus 343 l~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~i~~--~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~-- 409 (552)
+.++++.+...++.+..++-.. ..........+ ...-..++.++++.++.++..++.++..+..- ..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4556666666666666554210 01112222222 12456677778888888999888888766411 00
Q ss_pred c---------------------hHHHHHhhcCchHHHHHHHhcccC-chhHHHHHHHHHHhhcCCChhhHHHHH
Q 008827 410 N---------------------SVEYIFAEDGIILDAVGRQLRIAS-KAEIEIQGMYVLGNVATGKESHKEAVM 461 (552)
Q Consensus 410 ~---------------------~~~~i~~~~~~~~~~l~~~L~~~~-~~~v~~~a~~~L~~la~~~~~~~~~i~ 461 (552)
+ ....+-+|+..+++.|+..+.++. ++.....++..|..++..-+.....|+
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 0 011222233237888888888755 567778888899999886665555555
No 374
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=22.20 E-value=1e+03 Score=25.82 Aligned_cols=163 Identities=14% Similarity=0.037 Sum_probs=82.8
Q ss_pred cCCCCchhchHHHHHHHhhcCCHHHHHHHHH---hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhc-
Q 008827 173 LDDPGRVGDEASFAFSSLIAEKEDMQKLAFE---VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL- 248 (552)
Q Consensus 173 l~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~- 248 (552)
++-+.+.+.-|..+|.-+..+...+...+-. .+.+..++..+. .++..+.-++++|.|+-.+ +..++.+...
T Consensus 554 ~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~---~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~ 629 (745)
T KOG0301|consen 554 LQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN---ADPANQLLVVRCLANLFSN-PAGRELFMSRL 629 (745)
T ss_pred hcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc---cchhHHHHHHHHHHHhccC-HHHHHHHHHHH
Confidence 3344455666666666555544433222211 223344444333 2355677889999998654 5555444332
Q ss_pred -ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc---C--CCHHHHHHHHHHHHHhhcC
Q 008827 249 -QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD---D--TSTAVQVAALGAISNIVVD 322 (552)
Q Consensus 249 -~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~---~--~~~~v~~~a~~aL~nl~~~ 322 (552)
..+..+++.=..++..++.+......|++-..-.. -.+.+..+.+...+. . ++-+.......||++|+..
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~----~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQD----NEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 23333333333455667766666666665431111 122455555555543 2 2445566778889999876
Q ss_pred CchhHHHHHhhCcHHHHHHhhc
Q 008827 323 FTTRRSTFIRLGGVKLLVQLSK 344 (552)
Q Consensus 323 ~~~~~~~~~~~g~i~~L~~ll~ 344 (552)
....+ .+.+.-.+..+..-++
T Consensus 706 ~~~~~-~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 706 DASVI-QLAKNRSVDSIAKKLK 726 (745)
T ss_pred cHHHH-HHHHhcCHHHHHHHHH
Confidence 54433 3333334444444443
No 375
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=2.5e+02 Score=31.60 Aligned_cols=93 Identities=15% Similarity=0.051 Sum_probs=64.7
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHh----hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 008827 249 QVLKLVVDALAHDSSDVRSAACMCLRSV----SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT 324 (552)
Q Consensus 249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~l----s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 324 (552)
.++..-..+|.+++..+|..+..++..- +.. ++.-- -.-+..+|.++..+.+.++-+...|..++.++....+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~-~n~Ll--Plvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATY-HNLLL--PLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhcc-chhHh--HHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 3556667788899999999998887654 222 12111 1346789999999999999999999999999987665
Q ss_pred hhHHHHHhhCcHHHHHHhhc
Q 008827 325 TRRSTFIRLGGVKLLVQLSK 344 (552)
Q Consensus 325 ~~~~~~~~~g~i~~L~~ll~ 344 (552)
+.-..=+-...+|.+-.++.
T Consensus 880 DFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 54322222356666665554
No 376
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=20.87 E-value=6.8e+02 Score=23.22 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred hhcCCCHHHHHHHHHHHHHhhc-------CCchhHHHHHhh-CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh----
Q 008827 300 LLDDTSTAVQVAALGAISNIVV-------DFTTRRSTFIRL-GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED---- 367 (552)
Q Consensus 300 lL~~~~~~v~~~a~~aL~nl~~-------~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~---- 367 (552)
+|+++++.+.+.+..+.+++-. ..+...+.+-.. ..=..++.+..+.++.+|..++..+..+.....+
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4677888888888777765421 111111112111 2334566778888999999999988765321000
Q ss_pred -Hh--------------------H-HHHH--HhhcHHHHHhhhcCCC--hhHHHHHHHHHHHhhcCCcchHHHH
Q 008827 368 -KC--------------------K-EEIF--MELTASLLASLICDPE--PSVQEQALALVRNLVDGRINSVEYI 415 (552)
Q Consensus 368 -~~--------------------~-~~i~--~~~~~~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i 415 (552)
+. + ..+- ..+.++.|+..+.++. +.+...++..|..++...|.....+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~I 154 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRI 154 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00 0 1122 1245677777776554 5666777777777777776544443
No 377
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.32 E-value=1.3e+03 Score=26.09 Aligned_cols=210 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008827 253 LVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR 332 (552)
Q Consensus 253 ~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~ 332 (552)
.+.+.+.+++...|.....+.. .+.+.+... +-...++........+.||.-+..+...++.+.. .+=+
T Consensus 67 rLaDaF~~Gn~llRf~V~rv~~---q~g~hln~v-~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~-------lipE 135 (970)
T KOG1988|consen 67 RLADAFPVGNNLLRFAVLRVDQ---QSGKHLNKV-LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSA-------LIPE 135 (970)
T ss_pred HHHHHhccCcHHHHHHHHHHHh---hccccchhh-hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhh-------hccc
Q ss_pred hCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC--hhHHHHHHHHHHHhhcCCc
Q 008827 333 LGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--PSVQEQALALVRNLVDGRI 409 (552)
Q Consensus 333 ~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~ 409 (552)
.+-++.++..-- +.++---+.++.+..+++..+ .-...+....+-.++..++ +..+...+.+++++.++
T Consensus 136 fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s------k~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~-- 207 (970)
T KOG1988|consen 136 FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS------KDFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCH-- 207 (970)
T ss_pred ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh------hhhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcch--
Q ss_pred chHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCChhHH
Q 008827 410 NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLR 488 (552)
Q Consensus 410 ~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~ 488 (552)
+..... +.....+++..++..+-....+..+.+++. +..+.. .+-+..|.++++ +....++
T Consensus 208 ----at~A~r--a~~l~m~lv~~tps~d~~v~fL~stT~Las-----rs~~ai-------~eq~d~l~q~~ked~~kivr 269 (970)
T KOG1988|consen 208 ----ATGASR--AFGLCMSLVSGTPSIDRVVAFLYSTTNLAS-----RSLVAI-------SEQSDVLLQFLKEDERKIVR 269 (970)
T ss_pred ----hhhhHH--HHHHHHHHhcCCCcccceeeehhhhHHHHH-----HHHHHh-------HHHHHHHHHhhcCCchhHHH
Q ss_pred HHHHHHHHhhc
Q 008827 489 TAAVWAVLNLT 499 (552)
Q Consensus 489 ~~a~~~l~~l~ 499 (552)
..+.|.+-+++
T Consensus 270 ~~vl~kl~~La 280 (970)
T KOG1988|consen 270 LKVLRKLDFLA 280 (970)
T ss_pred HHHHHHHHHHh
No 378
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.25 E-value=5.3e+02 Score=25.35 Aligned_cols=56 Identities=20% Similarity=0.129 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCC
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKT 66 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~ 66 (552)
|.+++.+.|+.-+.+...-.++ .+| ...+.|..||++++.++...+..++..+++.
T Consensus 1 D~elv~~IL~Ft~lLLEnc~NR--slY--sS~e~L~~LL~s~~~dVl~~aL~ll~~l~qr 56 (329)
T PF06012_consen 1 DKELVLAILRFTRLLLENCGNR--SLY--SSSEHLNSLLNSTDLDVLLAALRLLLRLAQR 56 (329)
T ss_pred CHHHHHHHHHHHHHHHhccCCC--Ccc--ccHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 4578888888888886554433 444 5678999999999999999999999887754
No 379
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.18 E-value=6.3e+02 Score=22.54 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=80.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-CChhHHHHH-HHHHHHhhcCCcchHHH
Q 008827 337 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQA-LALVRNLVDGRINSVEY 414 (552)
Q Consensus 337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-~~~~v~~~a-~~~L~~l~~~~~~~~~~ 414 (552)
.....+.+++..+.+..|+..+.......++ ..++.+-..+.. ++..+.... ..+++.+....+.
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~---------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~---- 120 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTE---------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPE---- 120 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--H---------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGG----
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhH---------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHH----
Confidence 4455677778888888888777654322111 123444455543 445554444 3444444322111
Q ss_pred HHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHH
Q 008827 415 IFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWA 494 (552)
Q Consensus 415 i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~ 494 (552)
..+.+.+.+.+ +++-++..++-.+....... ..+ .++..+...+.+++..+|++..|+
T Consensus 121 -------~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~~--~~~------------~~l~~~~~~~~d~~~~vq~ai~w~ 178 (213)
T PF08713_consen 121 -------ALELLEKWAKS-DNEWVRRAAIVMLLRYIRKE--DFD------------ELLEIIEALLKDEEYYVQKAIGWA 178 (213)
T ss_dssp -------HHHHHHHHHHC-SSHHHHHHHHHCTTTHGGGC--HHH------------HHHHHHHHCTTGS-HHHHHHHHHH
T ss_pred -------HHHHHHHHHhC-CcHHHHHHHHHHHHHHHHhc--CHH------------HHHHHHHHHcCCchHHHHHHHHHH
Confidence 45666666676 77778888777666555431 222 233456677788999999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHH
Q 008827 495 VLNLTCSSSPGSSGRLVKLH 514 (552)
Q Consensus 495 l~~l~~~~~~~~~~~~~~l~ 514 (552)
|..+.. ..++....+.
T Consensus 179 L~~~~~----~~~~~v~~~l 194 (213)
T PF08713_consen 179 LREIGK----KDPDEVLEFL 194 (213)
T ss_dssp HHHHCT----T-HHHHHHHH
T ss_pred HHHHHH----hCHHHHHHHH
Confidence 999995 3444544443
Done!