Query 008827
Match_columns 552
No_of_seqs 216 out of 2575
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 1.3E-43 4.4E-48 377.8 42.3 517 9-548 219-784 (810)
2 1jdh_A Beta-catenin; beta-cate 100.0 7.5E-43 2.6E-47 368.4 47.9 486 32-545 13-529 (529)
3 3now_A UNC-45 protein, SD10334 100.0 2.6E-43 8.7E-48 375.5 37.8 475 5-499 258-781 (810)
4 2z6h_A Catenin beta-1, beta-ca 100.0 4.9E-41 1.7E-45 362.0 50.1 490 32-548 10-529 (644)
5 3ul1_B Importin subunit alpha- 100.0 2.5E-41 8.4E-46 353.3 43.4 413 121-547 57-479 (510)
6 2z6g_A B-catenin; FULL-length, 100.0 1E-40 3.5E-45 364.9 46.9 511 4-549 125-666 (780)
7 3tpo_A Importin subunit alpha- 100.0 1.8E-40 6.3E-45 348.7 44.8 414 120-547 75-498 (529)
8 4b8j_A Importin subunit alpha- 100.0 1.3E-38 4.4E-43 335.7 42.0 415 120-549 73-499 (528)
9 1wa5_B Importin alpha subunit; 100.0 5.6E-38 1.9E-42 330.8 44.2 415 120-548 86-512 (530)
10 1jdh_A Beta-catenin; beta-cate 100.0 2E-38 6.8E-43 334.6 37.6 449 74-546 14-489 (529)
11 2z6h_A Catenin beta-1, beta-ca 100.0 1.8E-37 6.3E-42 334.1 42.4 492 4-528 24-548 (644)
12 2jdq_A Importin alpha-1 subuni 100.0 5E-37 1.7E-41 317.0 42.1 413 122-549 21-446 (450)
13 3ul1_B Importin subunit alpha- 100.0 3.9E-38 1.3E-42 329.1 33.2 369 165-550 58-434 (510)
14 2z6g_A B-catenin; FULL-length, 100.0 3.8E-37 1.3E-41 336.6 40.4 477 36-546 115-622 (780)
15 3tpo_A Importin subunit alpha- 100.0 4E-37 1.4E-41 323.3 34.8 370 165-550 77-453 (529)
16 4b8j_A Importin subunit alpha- 100.0 7.3E-35 2.5E-39 307.0 39.1 407 76-500 73-496 (528)
17 2jdq_A Importin alpha-1 subuni 100.0 1.2E-34 4.1E-39 299.2 37.2 404 78-500 21-443 (450)
18 3l6x_A Catenin delta-1; cateni 100.0 6.1E-35 2.1E-39 301.4 34.4 378 120-518 47-489 (584)
19 3nmz_A APC variant protein; pr 100.0 3.8E-35 1.3E-39 296.8 31.8 365 165-547 33-451 (458)
20 1wa5_B Importin alpha subunit; 100.0 1.5E-34 5.2E-39 304.6 37.1 409 35-454 86-513 (530)
21 3l6x_A Catenin delta-1; cateni 100.0 1.1E-34 3.7E-39 299.6 33.8 366 162-547 46-477 (584)
22 3nmz_A APC variant protein; pr 100.0 2.7E-35 9.4E-40 297.8 28.8 361 122-500 33-450 (458)
23 1xm9_A Plakophilin 1; armadill 100.0 5.4E-35 1.9E-39 300.7 28.4 363 165-548 3-451 (457)
24 1xm9_A Plakophilin 1; armadill 100.0 1.4E-34 4.9E-39 297.6 30.2 362 122-500 3-449 (457)
25 3nmw_A APC variant protein; AR 100.0 1.4E-29 4.8E-34 248.9 26.6 272 262-548 45-336 (354)
26 3nmw_A APC variant protein; AR 100.0 2.3E-29 8E-34 247.3 26.4 266 222-500 47-334 (354)
27 3opb_A SWI5-dependent HO expre 100.0 1.1E-26 3.7E-31 242.8 27.5 488 14-529 232-759 (778)
28 4hxt_A De novo protein OR329; 100.0 7E-26 2.4E-30 214.3 30.3 243 292-549 2-244 (252)
29 4hxt_A De novo protein OR329; 100.0 5.5E-26 1.9E-30 215.0 28.1 241 249-501 2-242 (252)
30 4db8_A Armadillo-repeat protei 99.9 1.5E-25 5.2E-30 212.2 26.2 242 290-546 10-251 (252)
31 4db8_A Armadillo-repeat protei 99.9 1.4E-25 4.7E-30 212.4 25.2 239 249-500 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 1.8E-23 6.2E-28 218.6 35.9 430 94-547 230-729 (778)
33 1b3u_A Protein (protein phosph 99.9 9.2E-23 3.1E-27 217.5 34.3 456 38-546 128-587 (588)
34 1b3u_A Protein (protein phosph 99.9 1.7E-22 5.7E-27 215.5 36.0 460 37-547 88-549 (588)
35 4db6_A Armadillo repeat protei 99.9 1.6E-22 5.5E-27 185.7 25.1 202 288-500 8-209 (210)
36 4fdd_A Transportin-1; heat rep 99.9 1.7E-22 5.9E-27 224.7 28.8 514 4-547 138-743 (852)
37 4db6_A Armadillo repeat protei 99.9 2E-22 7E-27 185.0 23.6 200 203-406 10-209 (210)
38 4fdd_A Transportin-1; heat rep 99.9 1.1E-21 3.7E-26 218.3 27.8 513 3-547 99-700 (852)
39 1xqr_A HSPBP1 protein; armadil 99.9 5.3E-21 1.8E-25 182.8 23.9 186 222-410 55-242 (296)
40 3tt9_A Plakophilin-2; cell adh 99.9 5.4E-21 1.8E-25 174.7 18.2 196 165-365 9-231 (233)
41 1xqr_A HSPBP1 protein; armadil 99.9 8.4E-20 2.9E-24 174.5 24.7 225 306-546 54-287 (296)
42 2vgl_B AP-2 complex subunit be 99.9 2.8E-19 9.6E-24 189.8 29.9 357 4-408 23-384 (591)
43 3tt9_A Plakophilin-2; cell adh 99.9 5.5E-20 1.9E-24 168.0 20.5 198 250-452 9-230 (233)
44 2bpt_A Importin beta-1 subunit 99.8 7.4E-18 2.5E-22 187.9 34.6 506 7-547 148-712 (861)
45 3grl_A General vesicular trans 99.8 1.3E-16 4.4E-21 162.7 38.1 452 35-496 20-546 (651)
46 2bpt_A Importin beta-1 subunit 99.8 6.3E-18 2.2E-22 188.4 28.8 511 4-547 105-669 (861)
47 2vgl_B AP-2 complex subunit be 99.8 6.3E-17 2.1E-21 171.7 34.5 467 4-546 59-532 (591)
48 1qgr_A Protein (importin beta 99.8 1.5E-16 5.1E-21 177.7 35.6 506 7-546 143-722 (876)
49 1u6g_C TIP120 protein, CAND1; 99.8 2.5E-16 8.7E-21 181.9 35.7 513 3-548 15-600 (1230)
50 1qgr_A Protein (importin beta 99.8 1.1E-16 3.7E-21 178.8 30.1 508 7-547 50-680 (876)
51 1w63_A Adapter-related protein 99.8 6E-16 2.1E-20 164.8 34.0 396 37-499 71-489 (618)
52 3grl_A General vesicular trans 99.8 9.1E-16 3.1E-20 156.5 31.8 373 120-500 20-449 (651)
53 1u6g_C TIP120 protein, CAND1; 99.7 1.4E-15 4.7E-20 175.7 30.6 511 4-548 58-681 (1230)
54 1w63_A Adapter-related protein 99.7 2.7E-15 9.3E-20 159.7 29.2 440 37-546 108-577 (618)
55 1ibr_B P95, importin beta-1 su 99.7 3.9E-15 1.3E-19 153.4 26.7 385 84-500 9-437 (462)
56 1oyz_A Hypothetical protein YI 99.7 1.1E-14 3.6E-19 139.7 24.7 257 120-448 22-279 (280)
57 1oyz_A Hypothetical protein YI 99.7 1.3E-14 4.5E-19 139.0 25.1 258 202-543 20-279 (280)
58 1ibr_B P95, importin beta-1 su 99.6 5.9E-14 2E-18 144.6 26.7 388 124-547 4-438 (462)
59 2vgl_A Adaptor protein complex 99.6 4.2E-12 1.5E-16 134.7 35.0 402 36-500 74-509 (621)
60 3ltm_A Alpha-REP4; protein eng 99.5 4.4E-13 1.5E-17 122.5 19.3 189 290-548 17-205 (211)
61 3ltj_A Alpharep-4; protein eng 99.5 4.2E-13 1.5E-17 121.6 18.6 189 289-547 11-199 (201)
62 2vgl_A Adaptor protein complex 99.5 2E-11 7E-16 129.4 34.2 447 37-546 112-589 (621)
63 3ltj_A Alpharep-4; protein eng 99.5 1.5E-12 5.1E-17 117.9 21.9 184 249-499 14-197 (201)
64 3ltm_A Alpha-REP4; protein eng 99.5 1.7E-12 5.7E-17 118.6 22.3 186 248-500 18-203 (211)
65 4gmo_A Putative uncharacterize 99.3 5.3E-08 1.8E-12 104.6 40.9 218 35-277 33-257 (684)
66 4gmo_A Putative uncharacterize 99.0 1.3E-09 4.3E-14 117.2 13.5 195 294-499 36-257 (684)
67 4ady_A RPN2, 26S proteasome re 99.0 5.5E-07 1.9E-11 96.8 29.6 309 165-545 393-718 (963)
68 2db0_A 253AA long hypothetical 98.9 4.3E-07 1.5E-11 76.3 21.8 218 289-547 29-247 (253)
69 4ady_A RPN2, 26S proteasome re 98.9 3.6E-07 1.2E-11 98.2 27.2 302 79-450 394-718 (963)
70 2qk2_A LP04448P; mini spindles 98.8 1.2E-07 4.2E-12 88.1 17.5 186 251-451 17-205 (242)
71 1wa5_C Importin alpha RE-expor 98.8 2.6E-05 8.8E-10 87.5 39.1 505 7-547 50-671 (960)
72 1wa5_C Importin alpha RE-expor 98.8 6.2E-06 2.1E-10 92.5 33.2 388 122-547 36-526 (960)
73 2db0_A 253AA long hypothetical 98.8 2.7E-06 9.2E-11 71.6 21.7 216 247-500 30-246 (253)
74 3b2a_A TON_1937, putative unch 98.8 7.6E-07 2.6E-11 78.3 18.9 187 334-547 33-219 (265)
75 3b2a_A TON_1937, putative unch 98.7 1.1E-06 3.8E-11 77.3 18.9 225 291-544 32-259 (265)
76 2qk2_A LP04448P; mini spindles 98.7 1E-07 3.5E-12 88.6 13.5 184 210-406 20-205 (242)
77 3tjz_B Coatomer subunit gamma; 98.7 2.9E-07 1E-11 89.0 14.1 276 38-359 70-349 (355)
78 3tjz_B Coatomer subunit gamma; 98.6 2.4E-06 8.3E-11 82.6 20.3 246 249-546 68-316 (355)
79 1te4_A Conserved protein MTH18 98.6 8.2E-09 2.8E-13 86.0 2.1 120 377-544 12-131 (131)
80 2qk1_A Protein STU2; STU2P, XM 98.6 1.5E-06 5E-11 80.8 16.3 191 254-451 21-220 (249)
81 2x1g_F Cadmus; transport prote 98.5 0.0001 3.5E-09 82.8 32.6 481 35-546 121-722 (971)
82 2qk1_A Protein STU2; STU2P, XM 98.5 5.1E-07 1.7E-11 83.9 11.2 192 296-499 20-219 (249)
83 2x1g_F Cadmus; transport prote 98.5 5.3E-05 1.8E-09 85.2 29.0 473 35-547 38-616 (971)
84 1ho8_A Vacuolar ATP synthase s 98.5 6.3E-05 2.1E-09 74.5 25.6 344 120-499 76-475 (480)
85 1te4_A Conserved protein MTH18 98.5 3.5E-08 1.2E-12 82.1 2.2 122 332-498 10-131 (131)
86 2x19_B Importin-13; nuclear tr 98.4 0.00021 7.1E-09 80.3 31.3 466 35-546 56-599 (963)
87 3m1i_C Exportin-1; heat repeat 98.4 0.002 6.8E-08 72.9 38.9 431 35-500 47-569 (1049)
88 2x19_B Importin-13; nuclear tr 98.3 0.00041 1.4E-08 77.9 30.9 451 45-547 34-557 (963)
89 4hat_C Exportin-1; heat repeat 98.3 0.01 3.5E-07 66.2 40.6 465 35-547 47-619 (1023)
90 3m1i_C Exportin-1; heat repeat 98.3 0.00072 2.5E-08 76.5 31.9 455 47-547 27-570 (1049)
91 1ho8_A Vacuolar ATP synthase s 98.2 0.0003 1E-08 69.6 22.9 320 34-363 75-476 (480)
92 3ibv_A Exportin-T; karyopherin 98.1 0.0013 4.5E-08 73.2 29.0 439 35-500 39-566 (980)
93 2iw3_A Elongation factor 3A; a 98.0 0.00059 2E-08 74.5 23.4 285 180-498 31-322 (986)
94 2iw3_A Elongation factor 3A; a 98.0 0.002 6.9E-08 70.4 25.8 293 224-549 31-327 (986)
95 3ibv_A Exportin-T; karyopherin 97.9 0.014 4.9E-07 64.9 32.8 423 89-549 21-569 (980)
96 4hat_C Exportin-1; heat repeat 97.9 0.017 6E-07 64.4 33.2 466 36-547 16-570 (1023)
97 3dad_A FH1/FH2 domain-containi 97.9 0.00066 2.3E-08 63.9 17.9 153 254-410 123-290 (339)
98 3dad_A FH1/FH2 domain-containi 97.9 0.0012 4.1E-08 62.1 19.5 191 295-490 121-326 (339)
99 3gjx_A Exportin-1; transport, 97.6 0.13 4.6E-06 57.3 32.4 461 35-547 27-596 (1073)
100 4ffb_C Protein STU2; tubulin f 97.4 0.0082 2.8E-07 56.4 18.0 187 297-500 14-212 (278)
101 4ffb_C Protein STU2; tubulin f 97.3 0.01 3.5E-07 55.7 17.4 190 250-451 11-212 (278)
102 3oc3_A Helicase MOT1, MOT1; re 97.3 0.0053 1.8E-07 61.3 14.8 254 124-447 177-432 (800)
103 1lrv_A LRV, leucine-rich repea 97.2 0.00031 1.1E-08 64.3 5.1 43 254-315 79-121 (244)
104 2of3_A ZYG-9; multifunctional 97.0 0.023 7.7E-07 52.3 15.7 178 338-546 50-236 (266)
105 2of3_A ZYG-9; multifunctional 97.0 0.024 8.2E-07 52.1 15.7 170 221-405 60-235 (266)
106 3l9t_A Putative uncharacterize 96.8 0.029 9.8E-07 50.0 13.8 145 250-417 72-218 (240)
107 3oc3_A Helicase MOT1, MOT1; re 96.7 0.02 6.8E-07 57.3 13.4 244 250-541 175-431 (800)
108 3gjx_A Exportin-1; transport, 96.6 1.4 4.7E-05 49.3 33.6 427 35-500 59-595 (1073)
109 3u0r_A Apoptosis inhibitor 5; 96.6 0.31 1.1E-05 48.1 20.3 294 81-410 33-362 (507)
110 1lrv_A LRV, leucine-rich repea 96.5 0.0042 1.4E-07 56.7 6.6 21 252-272 101-121 (244)
111 3u0r_A Apoptosis inhibitor 5; 96.1 0.17 5.8E-06 49.9 15.6 122 221-363 42-163 (507)
112 1upk_A MO25 protein; transfera 95.9 0.59 2E-05 44.0 17.9 200 120-323 77-285 (341)
113 3c2g_A SYS-1 protein; beta-cat 95.9 0.26 9E-06 46.1 15.0 127 233-362 268-409 (619)
114 3a6p_A Exportin-5; exportin-5, 95.7 3 0.0001 47.6 26.6 220 49-279 109-381 (1204)
115 1lsh_A Lipovitellin (LV-1N, LV 95.7 1.5 5E-05 49.3 23.5 171 250-454 392-579 (1056)
116 3l9t_A Putative uncharacterize 95.4 0.54 1.8E-05 41.9 14.9 145 335-515 72-218 (240)
117 3ebb_A Phospholipase A2-activa 95.0 1.7 5.7E-05 40.8 18.0 178 164-345 103-287 (304)
118 1upk_A MO25 protein; transfera 94.8 2.8 9.6E-05 39.4 23.5 203 243-452 72-284 (341)
119 2fv2_A RCD1 required for cell 94.2 3.1 0.00011 37.4 18.3 185 221-407 15-225 (268)
120 2fv2_A RCD1 required for cell 93.7 3 0.0001 37.5 15.4 148 310-460 74-232 (268)
121 2f31_A Diaphanous protein homo 93.3 4.3 0.00015 36.4 17.4 158 237-396 32-218 (233)
122 1lsh_A Lipovitellin (LV-1N, LV 93.3 0.95 3.3E-05 50.7 14.5 136 335-499 392-542 (1056)
123 3eg5_B Protein diaphanous homo 93.3 6.4 0.00022 38.3 19.0 157 237-396 98-284 (383)
124 3eg5_B Protein diaphanous homo 92.7 7 0.00024 38.0 18.1 121 288-410 106-250 (383)
125 3ebb_A Phospholipase A2-activa 92.6 4.9 0.00017 37.7 16.2 187 36-227 103-297 (304)
126 2f31_A Diaphanous protein homo 91.5 6.7 0.00023 35.1 15.3 149 203-352 41-217 (233)
127 3a6p_A Exportin-5; exportin-5, 90.1 30 0.001 39.4 31.9 269 37-321 46-380 (1204)
128 2bnx_A Diaphanous protein homo 89.1 11 0.00036 36.8 15.4 105 305-410 71-188 (386)
129 3c2g_A SYS-1 protein; beta-cat 88.7 16 0.00055 34.4 15.3 155 318-526 268-447 (619)
130 2bnx_A Diaphanous protein homo 88.0 20 0.00069 34.7 18.4 158 237-396 36-222 (386)
131 3o2t_A Symplekin; heat repeat, 84.5 30 0.001 33.4 16.5 161 248-417 62-267 (386)
132 1mhq_A ADP-ribosylation factor 82.5 4.6 0.00016 33.2 7.6 72 334-405 38-115 (148)
133 3ldz_A STAM-1, signal transduc 81.6 3.2 0.00011 33.9 6.3 72 334-405 42-113 (140)
134 3g2s_A C-terminal fragment of 81.1 5.3 0.00018 32.8 7.5 72 334-405 48-125 (149)
135 1x5b_A Signal transducing adap 80.6 4.7 0.00016 33.8 7.2 94 303-405 30-124 (163)
136 3s4w_B Protein FACD2, fanconi 77.7 1E+02 0.0035 35.0 24.2 327 37-407 158-508 (1323)
137 1juq_A ADP-ribosylation factor 75.7 6.9 0.00024 33.0 6.8 94 303-405 28-127 (171)
138 3g2s_A C-terminal fragment of 75.5 7.7 0.00026 31.9 6.8 71 422-499 49-125 (149)
139 3gs3_A Symplekin, LD45768P; he 75.1 48 0.0016 29.9 21.1 108 249-362 53-172 (257)
140 2b6c_A Hypothetical protein EF 73.6 47 0.0016 29.2 12.6 140 252-416 58-198 (220)
141 3jxy_A Alkylpurine DNA glycosy 69.7 54 0.0019 29.0 11.8 141 252-417 64-206 (232)
142 3ldz_A STAM-1, signal transduc 69.2 9.5 0.00033 30.9 6.0 71 422-499 43-113 (140)
143 1mhq_A ADP-ribosylation factor 68.9 16 0.00056 29.9 7.4 71 422-499 39-115 (148)
144 1x5b_A Signal transducing adap 68.8 17 0.00058 30.3 7.6 95 387-499 29-124 (163)
145 3o2t_A Symplekin; heat repeat, 68.3 88 0.003 30.1 14.7 131 351-499 42-182 (386)
146 1juq_A ADP-ribosylation factor 66.9 22 0.00075 29.9 8.0 94 388-499 28-127 (171)
147 3s4w_B Protein FACD2, fanconi 65.9 1.8E+02 0.0063 33.0 23.6 231 164-410 192-471 (1323)
148 3zyq_A Hepatocyte growth facto 64.7 14 0.00048 32.8 6.7 94 303-405 23-117 (226)
149 3gs3_A Symplekin, LD45768P; he 64.1 83 0.0028 28.4 17.8 133 349-499 30-172 (257)
150 1elk_A Target of MYB1; superhe 62.9 23 0.00077 29.3 7.2 94 303-405 31-129 (157)
151 1dvp_A HRS, hepatocyte growth 56.5 21 0.00071 31.5 6.3 72 334-405 42-114 (220)
152 2npp_B PP2A, B subunit, serine 52.1 1.8E+02 0.0063 28.5 16.8 233 288-548 158-401 (449)
153 1vdy_A Hypothetical protein (R 51.8 59 0.002 26.2 7.6 72 471-547 49-131 (140)
154 3zyq_A Hepatocyte growth facto 51.2 15 0.00052 32.6 4.5 71 121-191 45-117 (226)
155 2jak_A Serine/threonine-protei 50.7 1.8E+02 0.0061 28.0 13.7 187 288-492 170-359 (392)
156 3fga_B Serine/threonine-protei 50.0 1.9E+02 0.0063 28.0 20.8 236 288-551 125-371 (403)
157 1elk_A Target of MYB1; superhe 49.9 56 0.0019 26.9 7.5 96 387-499 30-129 (157)
158 4atg_A TAF6; transcription, TF 49.4 60 0.0021 27.9 7.7 110 249-361 40-160 (196)
159 3qml_C Protein SLS1, nucleotid 45.4 1.9E+02 0.0064 26.7 12.8 96 219-320 82-188 (315)
160 3qml_C Protein SLS1, nucleotid 44.9 1.9E+02 0.0065 26.7 13.1 134 351-499 45-188 (315)
161 3gae_A Protein DOA1; UFD3, CDC 41.1 80 0.0027 28.4 7.7 132 394-548 71-219 (253)
162 2b6c_A Hypothetical protein EF 39.8 1.9E+02 0.0064 25.1 10.6 24 381-404 59-82 (220)
163 1dvp_A HRS, hepatocyte growth 39.8 27 0.00094 30.7 4.3 68 121-188 42-111 (220)
164 1vsy_5 Proteasome activator BL 38.0 2.3E+02 0.008 31.2 12.1 181 80-276 136-363 (997)
165 3gae_A Protein DOA1; UFD3, CDC 36.9 74 0.0025 28.6 6.8 100 220-323 103-219 (253)
166 3pst_A Protein DOA1; protein d 35.0 3E+02 0.01 26.8 11.0 131 394-547 243-390 (425)
167 3pst_A Protein DOA1; protein d 34.7 2E+02 0.0069 28.0 9.7 101 219-324 274-392 (425)
168 3rru_A TOM1L1 protein; structu 28.5 1.3E+02 0.0043 24.6 6.2 96 303-407 31-131 (152)
169 3l3f_X Protein DOA1, DOA1/UFD3 28.4 3.9E+02 0.013 25.3 10.5 131 394-547 180-327 (362)
170 3l3f_X Protein DOA1, DOA1/UFD3 28.4 2E+02 0.0069 27.3 8.4 99 220-323 212-328 (362)
171 4atg_A TAF6; transcription, TF 24.0 1.7E+02 0.0057 25.1 6.3 97 7-104 59-161 (196)
172 1vsy_5 Proteasome activator BL 23.1 7.8E+02 0.027 27.1 16.0 189 289-499 130-364 (997)
173 1vdy_A Hypothetical protein (R 21.1 3.2E+02 0.011 21.8 7.6 43 334-376 49-91 (140)
174 3rru_A TOM1L1 protein; structu 21.0 1.7E+02 0.0057 23.9 5.6 97 387-500 30-130 (152)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-43 Score=377.82 Aligned_cols=517 Identities=13% Similarity=0.121 Sum_probs=404.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCC-cccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhh--HHHHHhcCchHHHHHh
Q 008827 9 EVVDAGARSLKMIYQSKMAPK-YDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSL 85 (552)
Q Consensus 9 ~~~~~~l~~l~~l~~~~~~~~-~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~--~~~l~~~g~i~~L~~l 85 (552)
.....+.-||..++..-...+ .+.+.+..-..+...+..++.+-...|+.++.++...... ...+...|+++.++.+
T Consensus 219 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~L 298 (810)
T 3now_A 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAM 298 (810)
T ss_dssp THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHH
Confidence 344556666666654332211 1223323334455555555655567777788876554433 3445578999999999
Q ss_pred hcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH--
Q 008827 86 LGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-- 162 (552)
Q Consensus 86 L~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-- 162 (552)
+.+ +..+++.|++++++++.+ +..+..+.+ .+++.+..+++++++.+|..|+.+|++++...........+.
T Consensus 299 l~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~----~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 299 ATTDDELQQRVACECLIAASSK-KDKAKALCE----QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHH----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred hCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHH----cCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhc
Confidence 998 568899999999998766 555555542 345889999999999999999999999975432111111222
Q ss_pred --HhHHHHHHHhcCC---CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC
Q 008827 163 --TKLINNLLELLDD---PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK 237 (552)
Q Consensus 163 --~g~i~~Lv~ll~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~ 237 (552)
...++.|+++|.+ +++++..|+++|++|+.+.+.....+.+.|++|.|+++|+++ ++.++..++++|+|++.+
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~--d~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG--NQSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC--ChHHHHHHHHHHHHHcCC
Confidence 3457778888873 468999999999999876555444445689999999999875 478999999999999975
Q ss_pred Ch-----------------------------hHH---HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827 238 LE-----------------------------CCR---SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 285 (552)
Q Consensus 238 ~~-----------------------------~~~---~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 285 (552)
.+ ..+ +.+++.|++|.|+.+++++++.+|..|+++|.|++.. +..+.
T Consensus 452 ~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~ 530 (810)
T 3now_A 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRG 530 (810)
T ss_dssp SCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHH
Confidence 42 223 5778999999999999999999999999999999976 44555
Q ss_pred hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH--HHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 008827 286 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST--FIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLI 362 (552)
Q Consensus 286 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~--~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 362 (552)
. +.+.|++|+|+.+|.++++..++.|+|+|+|++.+..+.... ....|++++|++++.++ +...+..|+++|.|++
T Consensus 531 ~-Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 531 K-VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp H-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred H-HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 5 899999999999999999999999999999998654332110 01246999999999876 4455678999999999
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH
Q 008827 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG 442 (552)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a 442 (552)
.. +++.+..+++.|+++.|+.++.++++.+|+.|+++++|++.+.+ ....+....| .++.|+.++.+ ++.+++..|
T Consensus 610 ~~-~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g-~l~~Lv~LL~s-~d~~vq~~A 685 (810)
T 3now_A 610 SM-NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNND-RVKFLALLCED-EDEETATAC 685 (810)
T ss_dssp TS-CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSS-HHHHHHHGGGC-SSHHHHHHH
T ss_pred cC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccC-cHHHHHHHhcC-CCHHHHHHH
Confidence 84 35788999999999999999999999999999999999998654 4444443223 79999999988 889999999
Q ss_pred HHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHH
Q 008827 443 MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHV 522 (552)
Q Consensus 443 ~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L 522 (552)
+|+|+|++.+++...+.+++ ..|+++.|+.+|++++.++|+.|+|+|.|++. ++.++.+.+.+.|++++|
T Consensus 686 a~ALanLt~~s~~~~~~ii~------~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~----~s~e~~~~l~e~G~i~~L 755 (810)
T 3now_A 686 AGALAIITSVSVKCCEKILA------IASWLDILHTLIANPSPAVQHRGIVIILNMIN----AGEEIAKKLFETDIMELL 755 (810)
T ss_dssp HHHHHHHHHHCHHHHHHHHT------STTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT----TCHHHHHHHHTSTHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH------HcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh----CCHHHHHHHHHCCCHHHH
Confidence 99999999977777888875 26899999999999999999999999999996 467889999999999999
Q ss_pred HhhhcCC---CccHHHHHHHHHHHHhhhc
Q 008827 523 KNMVNDP---CLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 523 ~~ll~~~---~~~v~~~a~~al~~~~~~~ 548 (552)
.++++++ +.++.+.|..||.++.+.+
T Consensus 756 ~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 756 SGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp TTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 9998654 5789999999999998875
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.5e-43 Score=368.43 Aligned_cols=486 Identities=12% Similarity=0.118 Sum_probs=406.9
Q ss_pred cccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc-CchHHHHHhhc-C-CHHHHHHHHHHHHHHhcCCh
Q 008827 32 FLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLG-G-SLIQRDASLESIATIFKNNP 108 (552)
Q Consensus 32 ~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i~~L~~lL~-~-~~~v~~~al~~L~~l~~~~~ 108 (552)
.+..+.++.|+.+|+++++.+++.|+.+|.+++..+.++..+... |++++|+++|. + ++.++..++.+|.+++.+.+
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 356788999999999999999999999999999888887777754 89999999997 3 67899999999999987644
Q ss_pred hhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHH
Q 008827 109 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAF 187 (552)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L 187 (552)
....+.+ .+.++.++++++++++.+|..|+.+|.+++...+. .+..++..|++|.|++++++ +.+++..++.+|
T Consensus 93 -~~~~i~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 93 -GLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp -HHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred -hHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455543 68999999999999999999999999999987543 35567789999999999984 457788888999
Q ss_pred HHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHH
Q 008827 188 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS 267 (552)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~ 267 (552)
.+++..+++.+..+.+.|+++.|++++++.+ +...+..+..+|.+++. ++..+..+.+.|+++.++++++++++.++.
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~ 245 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHH
Confidence 9999988998888999999999999998773 56677889999999986 567888999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC--
Q 008827 268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-- 345 (552)
Q Consensus 268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-- 345 (552)
.++++|.++++..+.. ....+++|.|++++.+++++++..|+++|+|++.+.+..+..+.+.|+++.|++++.+
T Consensus 246 ~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 246 NCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp HHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 9999999999874321 2345889999999999999999999999999998777788899999999999999975
Q ss_pred CCHHHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 008827 346 MDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGII 422 (552)
Q Consensus 346 ~~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~ 422 (552)
+++.++..++++|+|++...+. ..+..+.+.++++.+++++.+++ +.++..++++|+|++.+.. ....+.+.+ +
T Consensus 322 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~--~ 398 (529)
T 1jdh_A 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQG--A 398 (529)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTT--H
T ss_pred CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcC--C
Confidence 3479999999999999875332 25778889999999999999876 5999999999999998654 446666666 8
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHh----------------------hcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 008827 423 LDAVGRQLRIASKAEIEIQGMYVLGN----------------------VATGKESHKEAVMDQLLLRAENKAQSCIIKFL 480 (552)
Q Consensus 423 ~~~l~~~L~~~~~~~v~~~a~~~L~~----------------------la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL 480 (552)
++.|+.+|.+ ++++++..++|+++| ++. .+..+..+.+ .|+++.|+.++
T Consensus 399 i~~L~~ll~~-~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~-------~~~v~~l~~ll 469 (529)
T 1jdh_A 399 IPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRG-------LNTIPLFVQLL 469 (529)
T ss_dssp HHHHHHHHHH-HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHH-------TTCHHHHHHGG
T ss_pred HHHHHHHHHH-HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhc-------cCCccHHHHHH
Confidence 9999999987 677777777776666 433 2333444444 78999999999
Q ss_pred cCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827 481 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 545 (552)
Q Consensus 481 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~ 545 (552)
.+++++++..|++++.+++. ..+....+.+.|+++.|.+++++++++++++|.++|.+++
T Consensus 470 ~~~~~~v~~~a~~~l~~l~~-----~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 470 YSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp GCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHHHHHhc-----CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999984 4677888999999999999999999999999999999874
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-43 Score=375.52 Aligned_cols=475 Identities=14% Similarity=0.140 Sum_probs=395.4
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827 5 KSYMEVVDAGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT 83 (552)
Q Consensus 5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~ 83 (552)
+.+..-...+.+++.+++..+......++ .++.++.|+.+++++++.+++.|+.++.++|.....|..+.+.|+ ++|.
T Consensus 258 ~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~ 336 (810)
T 3now_A 258 APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILK 336 (810)
T ss_dssp SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHH
T ss_pred cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHH
Confidence 34555567788999999877644434445 789999999999999999999999999999999888999999886 9999
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhcCCh-hhh-hhhccccCCccHHHHHHHHhcC--ChhhHHHHHHHHHHHhhhCCCcchh
Q 008827 84 SLLGG-SLIQRDASLESIATIFKNNP-EVV-SQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCYLQD 158 (552)
Q Consensus 84 ~lL~~-~~~v~~~al~~L~~l~~~~~-~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~vr~~A~~~L~~l~~~~~~~~~~ 158 (552)
.++++ ++.+|..|+.+|+++..... +.. ..+..-.....++.+.+++.++ +++++..|+++|.+++..... +.
T Consensus 337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v--k~ 414 (810)
T 3now_A 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC--KE 414 (810)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH--HH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH--HH
Confidence 99986 56899999999999975432 111 2221100012356677788887 899999999999999876433 34
Q ss_pred hhh-HHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCH-----------------------------HHH---HHHHHh
Q 008827 159 VGI-KTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKE-----------------------------DMQ---KLAFEV 204 (552)
Q Consensus 159 ~~~-~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~-----------------------------~~~---~~~~~~ 204 (552)
.++ ..|++|.|+++++ +++.++..|+++|+|++.+++ ..+ +.+++.
T Consensus 415 ~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea 494 (810)
T 3now_A 415 KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE 494 (810)
T ss_dssp HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence 444 4799999999998 567899999999999998541 233 568899
Q ss_pred CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827 205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 284 (552)
Q Consensus 205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~ 284 (552)
|++|.|++++.+++ +.+++.|+++|++++. ++++|..+++.|++|.|+.+|+++++..+..|+++|.+++.+... .
T Consensus 495 GaVp~LV~LL~s~s--~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p-~ 570 (810)
T 3now_A 495 GITTALCALAKTES--HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP-E 570 (810)
T ss_dssp THHHHHHHHHTCCC--HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-H
T ss_pred cCHHHHHHHHcCCC--HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-h
Confidence 99999999998764 8999999999999996 567999999999999999999999999999999999999876322 1
Q ss_pred chhh---hccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 285 AGSF---MNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 360 (552)
Q Consensus 285 ~~~~---~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 360 (552)
.. + ...+++|+|+.+|.++ +...+..|+++|.||+...+..++.+++.|+++.|+.++.++++.+|..|+++++|
T Consensus 571 ~~-~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 571 VS-FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HH-TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hh-hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11 1 1246899999999855 55566799999999998877888899999999999999999999999999999999
Q ss_pred hcccCChHhHHHHHH-hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHh-hcCchHHHHHHHhcccCchhH
Q 008827 361 LIFLAEDKCKEEIFM-ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFA-EDGIILDAVGRQLRIASKAEI 438 (552)
Q Consensus 361 l~~~~~~~~~~~i~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~~~~~~l~~~L~~~~~~~v 438 (552)
++. .++.+..+.+ .+.++.|+.++.+++..+|..|+|+|+|++.+++..++.+++ .+ .++.|+++|.+ +++++
T Consensus 650 La~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g--~I~~Lv~LL~s-~d~~v 724 (810)
T 3now_A 650 LVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS--WLDILHTLIAN-PSPAV 724 (810)
T ss_dssp HTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT--HHHHHHHHHTC-SSHHH
T ss_pred HhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHCC-CCHHH
Confidence 987 3456777775 678999999999999999999999999999987778899998 55 78999999998 99999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC---ChhHHHHHHHHHHhhc
Q 008827 439 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN---DSRLRTAAVWAVLNLT 499 (552)
Q Consensus 439 ~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~---~~~~~~~a~~~l~~l~ 499 (552)
+..++|++.|++.++.++...+.+ .|+++.|+.+++.+ +.++...|..+|.++.
T Consensus 725 q~~A~~aL~NL~~~s~e~~~~l~e-------~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 725 QHRGIVIILNMINAGEEIAKKLFE-------TDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHT-------STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-------CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 999999999999877777777775 89999999999765 6889999999998886
No 4
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.9e-41 Score=362.00 Aligned_cols=490 Identities=13% Similarity=0.121 Sum_probs=415.7
Q ss_pred cccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc-CchHHHHHhhcC--CHHHHHHHHHHHHHHhcCCh
Q 008827 32 FLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLGG--SLIQRDASLESIATIFKNNP 108 (552)
Q Consensus 32 ~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~ 108 (552)
.+..+.++.|+.+|+++++.+++.|+.+|.+++....++..+... |+++.|+++|.+ +..++..|+.+|..++...+
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 357789999999999999999999999999999888877766654 899999999985 57899999999999987654
Q ss_pred hhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHH
Q 008827 109 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAF 187 (552)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L 187 (552)
....+.+ .+.++.++++++++++.+|..|+.+|.+++..... ....++..|++|.|++++++ +.+++..++.+|
T Consensus 90 -~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 90 -GLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp -HHHHHHT---TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred -hHHHHHH---cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 4445543 58999999999999999999999999999987543 34566789999999999984 456777778899
Q ss_pred HHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHH
Q 008827 188 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS 267 (552)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~ 267 (552)
.+++..+++.+..+.+.|+++.|++++.+.+ ....+..++.+|.+++. .+..+..+.+.|+++.++.++++++..++.
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~ 242 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 9999888888888999999999999998773 56778899999999986 567889999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-
Q 008827 268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM- 346 (552)
Q Consensus 268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~- 346 (552)
.++++|.++++..... ....++++.|++++.+++++++..|+++|+|++......++.+.+.|+++.|++++.+.
T Consensus 243 ~a~~~L~nL~~~~~~~----~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~ 318 (644)
T 2z6h_A 243 NCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 318 (644)
T ss_dssp HHHHHHHHHGGGCTTC----CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC
Confidence 9999999999874321 23458999999999999999999999999999988778888999999999999999863
Q ss_pred -CHHHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 008827 347 -DSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGII 422 (552)
Q Consensus 347 -~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~ 422 (552)
.+.++..++++|+|++...+. ..+..+.+.++++.|+++|.+++ +.++..++++|+|++.+... ...+++.+ +
T Consensus 319 ~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~--~ 395 (644)
T 2z6h_A 319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQG--A 395 (644)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTT--H
T ss_pred CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcC--C
Confidence 379999999999999864322 24566888899999999999875 69999999999999987544 46677776 7
Q ss_pred HHHHHHHhccc---------------------CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827 423 LDAVGRQLRIA---------------------SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 481 (552)
Q Consensus 423 ~~~l~~~L~~~---------------------~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~ 481 (552)
++.|+++|.+. .+.+++..++.+|.+++.. +..+..+.+ .|+++.|+.+|.
T Consensus 396 i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~-------~~~i~~Lv~lL~ 467 (644)
T 2z6h_A 396 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRG-------LNTIPLFVQLLY 467 (644)
T ss_dssp HHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS-HHHHHHHHH-------TTCHHHHHHHTT
T ss_pred HHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC-HHHHHHHHh-------CCcHHHHHHHHc
Confidence 89998888761 1345667788888888864 345555554 799999999999
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827 482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~ 548 (552)
++++.++..|+++|.+++. ..+....+.+.|+++.|.++++++++++++.|.+||.++....
T Consensus 468 ~~~~~v~~~a~~aL~~l~~-----~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 468 SPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHc-----CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999984 4677888999999999999999999999999999999987643
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.5e-41 Score=353.34 Aligned_cols=413 Identities=16% Similarity=0.191 Sum_probs=362.6
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHH
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~ 198 (552)
..++.+++.++++|+..|..|+..+..+.....+...+.+++.|++|.|+++|+ +++.+|.+|+++|+|+++++++.+
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 468999999999999999999999999876655555788999999999999997 346799999999999999999999
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC-----HHHHHHHHHHH
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----SDVRSAACMCL 273 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~-----~~v~~~a~~~L 273 (552)
+.+++.|++|.|+++|.++ ++.+++.|+++|++++.+++..|..+.+.|+++.++.++..++ ..++..+++++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 9999999999999999876 4889999999999999988999999999999999999998654 35678899999
Q ss_pred HHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827 274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353 (552)
Q Consensus 274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 353 (552)
.++++........ ....+++|.|++++.+++++++..|+++|++++.+.....+.+.+.|+++.|++++.+++..++..
T Consensus 215 ~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 215 SNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHCCCSSCCCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHhhcccchhHH-HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 9999874443332 345789999999999999999999999999999887777778889999999999999999999999
Q ss_pred HHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc
Q 008827 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA 433 (552)
Q Consensus 354 a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~ 433 (552)
++++|+|++.+ ++..+..+++.++++.|+.++.++++.++..++|+|+|++.+.++....+++.+ +++.++.+|.+
T Consensus 294 al~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g--~i~~Lv~lL~~- 369 (510)
T 3ul1_B 294 ALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK- 369 (510)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHHHS-
T ss_pred HHHHHHHhhcC-CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHcC-
Confidence 99999999874 456788899999999999999999999999999999999999888888888887 89999999988
Q ss_pred CchhHHHHHHHHHHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCC--CCCCCHHHH
Q 008827 434 SKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGRL 510 (552)
Q Consensus 434 ~~~~v~~~a~~~L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~ 510 (552)
++.+++..|+|+|+|++. ++..++..+++ .|+++.|+.+|+++|++++..++++|.|+... ..+......
T Consensus 370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-------~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~ 442 (510)
T 3ul1_B 370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS 442 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCHHHHHHHHH-------CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHH
Confidence 899999999999999997 45555666665 89999999999999999999999999998731 112334445
Q ss_pred HHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 511 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 511 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
..+.+.|+++.|..|..+++.++.++|...|.+++..
T Consensus 443 ~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 443 IMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 6677899999999999889999999999999888754
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1e-40 Score=364.88 Aligned_cols=511 Identities=12% Similarity=0.109 Sum_probs=425.1
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc-CchHHH
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRL 82 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i~~L 82 (552)
.+++..+...+++.++..- ...+..+.++.|+.+|.++++.+++.|+.+|.+++....++..+... |+++.|
T Consensus 125 ~~~~~~~r~~a~~~l~~~~-------~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~L 197 (780)
T 2z6g_A 125 AEPSQMLKHAVVNLINYQD-------DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 197 (780)
T ss_dssp -CCSCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHH
T ss_pred cCccHHHHHHHHHHHHhhh-------HHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHH
Confidence 3445555566666666431 12334788999999999989999999999999999887777767654 899999
Q ss_pred HHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827 83 TSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG 160 (552)
Q Consensus 83 ~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~ 160 (552)
+.+|++ +..+|..|+.+|.+++...+. ...+.+ .+.++.++.+++++++.+|..|+.+|.+++...+. .+..+
T Consensus 198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~---~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v 272 (780)
T 2z6g_A 198 VRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFK---SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAV 272 (780)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHH
Confidence 999973 678999999999999876433 445543 58899999999999999999999999999987543 34556
Q ss_pred hHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827 161 IKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 239 (552)
Q Consensus 161 ~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 239 (552)
+..|++|.|++++.+ +..++..++.+|.+++..+++.+..+.+.|+++.|++++++.+ ....++.+..+|.+++. .+
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~-~~ 350 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CS 350 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT-ST
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc-Ch
Confidence 678999999999984 4567888999999999888888888889999999999998763 45677788999999996 45
Q ss_pred hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827 240 CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 319 (552)
Q Consensus 240 ~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl 319 (552)
..+..+++.|+++.|+.++.+++..++..++++|.+++...... ....++++.|+++|.+++++++..|+++|++|
T Consensus 351 ~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~----~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999998864321 23468899999999999999999999999999
Q ss_pred hcCCchhHHHHHhhCcHHHHHHhhcC-C-CHHHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCCh-hHH
Q 008827 320 VVDFTTRRSTFIRLGGVKLLVQLSKS-M-DSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEP-SVQ 394 (552)
Q Consensus 320 ~~~~~~~~~~~~~~g~i~~L~~ll~~-~-~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~~-~v~ 394 (552)
+.+....+..+.+.|+++.|++++.+ + .+.++..|+++|+|++..... ..+..+...++++.|+++|.+++. .++
T Consensus 427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~ 506 (780)
T 2z6g_A 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 506 (780)
T ss_dssp TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHH
Confidence 98887888889999999999999976 3 358999999999999864332 135678889999999999998775 999
Q ss_pred HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc----------------------hhHHHHHHHHHHhhcCC
Q 008827 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK----------------------AEIEIQGMYVLGNVATG 452 (552)
Q Consensus 395 ~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~----------------------~~v~~~a~~~L~~la~~ 452 (552)
..++++|+|++.+.. ....+.+.+ +++.|+++|.+ ++ ++++..++.+|.+++.
T Consensus 507 ~~A~~aL~nLa~~~~-~~~~i~~~g--~i~~Lv~lL~~-~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~- 581 (780)
T 2z6g_A 507 KATVGLIRNLALCPA-NHAPLREQG--AIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR- 581 (780)
T ss_dssp HHHHHHHHHHHSSHH-HHHHHHHTT--HHHHHHHHHHH-HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCHH-HHHHHHHCC--CHHHHHHHHHh-cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-
Confidence 999999999997643 345666666 78888888865 22 4567778888888885
Q ss_pred ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCcc
Q 008827 453 KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLD 532 (552)
Q Consensus 453 ~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~ 532 (552)
++..+..+.+ .|+++.|+.+|.++++.++..|+.+|.+++. ..+....+.+.|+++.|.+++++++++
T Consensus 582 ~~~~~~~l~~-------~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-----~~~~~~~i~~~g~i~~L~~Ll~~~~~~ 649 (780)
T 2z6g_A 582 DIHNRIVIRG-------LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEG 649 (780)
T ss_dssp SHHHHHHHHH-------TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred ChhhHHHHHH-------CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----CHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 4445555554 8999999999999999999999999999984 467788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC
Q 008827 533 VKLRVKTALEQFNSFDD 549 (552)
Q Consensus 533 v~~~a~~al~~~~~~~~ 549 (552)
+|+.|.+||.++.....
T Consensus 650 Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 650 VATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCh
Confidence 99999999999987543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-40 Score=348.73 Aligned_cols=414 Identities=15% Similarity=0.183 Sum_probs=363.2
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDM 197 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~ 197 (552)
...++.++..+.++++..+..|+..+..+.........+.+++.|++|.|+++|+ +++.++.+|+++|++++.+++..
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 4568999999999999999999999999876655555678999999999999997 34679999999999999999998
Q ss_pred HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC-----HHHHHHHHHH
Q 008827 198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----SDVRSAACMC 272 (552)
Q Consensus 198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~-----~~v~~~a~~~ 272 (552)
.+.+++.|++|.|+.+|.+++ +.+++.|+++|++++.+++.+|..+.+.|+++.++.+|..++ ..++..++++
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~--~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPH--AHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 889999999999999888764 889999999999999999999999999999999999998654 3567889999
Q ss_pred HHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHH
Q 008827 273 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 352 (552)
Q Consensus 273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~ 352 (552)
+.+++++....... ....+++|.|+.++.+++++++..|+|+|++++.+.....+.+.+.|+++.|++++.+++..++.
T Consensus 233 L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 233 LSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHHCCCTTCCCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHhcccchhhH-HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 99999875443332 34578999999999999999999999999999988887788888999999999999999999999
Q ss_pred HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 008827 353 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI 432 (552)
Q Consensus 353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~ 432 (552)
.++++|+|++.+ ++..+..+++.|+++.|+.++.++++.++..|+|+|+|++.+.++....+++.+ +++.++.+|.+
T Consensus 312 ~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g--~i~~Lv~lL~~ 388 (529)
T 3tpo_A 312 PALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHHHS
T ss_pred HHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC--cHHHHHHHhcC
Confidence 999999999874 456888899999999999999999999999999999999999888888888887 89999999988
Q ss_pred cCchhHHHHHHHHHHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCC--CCCCCHHH
Q 008827 433 ASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGR 509 (552)
Q Consensus 433 ~~~~~v~~~a~~~L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~ 509 (552)
++.+++..|+|+|+|++. +++.++..+++ .|+++.|+.+|.++|++++..++++|.|+... ..+.....
T Consensus 389 -~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-------~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~ 460 (529)
T 3tpo_A 389 -ADFKTQKAAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 460 (529)
T ss_dssp -SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -CCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHH
Confidence 899999999999999987 45556666665 89999999999999999999999999998631 11233444
Q ss_pred HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
...+.+.|+++.|..|..+++.++.++|...|++++..
T Consensus 461 ~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 461 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 55677999999999999989999999999999888754
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.3e-38 Score=335.69 Aligned_cols=415 Identities=16% Similarity=0.179 Sum_probs=363.3
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-C-CchhchHHHHHHHhhcCCHHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-P-GRVGDEASFAFSSLIAEKEDM 197 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~-~~v~~~a~~~L~~l~~~~~~~ 197 (552)
...++.++..+.++++.+|..|+..|.++.........+.++..|++|.|+++|.+ + +.++..|+++|.+++.+++..
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35689999999999999999999999999776543456778889999999999984 3 688999999999999998998
Q ss_pred HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc-CCCCHHHHHHHHHHHHHh
Q 008827 198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSV 276 (552)
Q Consensus 198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L-~~~~~~v~~~a~~~L~~l 276 (552)
+..+++.|+++.|+.+|.++ ++.+++.|+++|++++.+++..+..+.+.|+++.++.++ .+.++.++..++++|.++
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 89999999999999999875 488999999999999998888999999999999999999 678999999999999999
Q ss_pred hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827 277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 356 (552)
Q Consensus 277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 356 (552)
+...+... . ....+++|.|+.+|.+++++++..|+++|++++.+.....+.+.+.|+++.|+.++.++++.++..|++
T Consensus 231 ~~~~~~~~-~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 231 CRGKPQPS-F-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp HCSSSCCC-H-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HcCCCCCc-H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence 98743332 2 456899999999999999999999999999999877776778889999999999999999999999999
Q ss_pred HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCC-ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc
Q 008827 357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK 435 (552)
Q Consensus 357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~ 435 (552)
+|+|++.+ ++.....+++.++++.|+.++.++ ++.++..|+++|+|++.+.++.+..++..+ +++.|+.+|.+ ++
T Consensus 309 ~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~lL~~-~~ 384 (528)
T 4b8j_A 309 TVGNIVTG-DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG--IIGPLVNLLQT-AE 384 (528)
T ss_dssp HHHHHTTS-CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--CHHHHHHHHHH-SC
T ss_pred HHHHHHcC-CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC--CHHHHHHHHhc-CC
Confidence 99999874 456778888999999999999998 999999999999999998877888888877 79999999988 78
Q ss_pred hhHHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCC-------CCH
Q 008827 436 AEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSS 507 (552)
Q Consensus 436 ~~v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~-------~~~ 507 (552)
+.++..++++|+|++.+ ++..+..+++ .|+++.|+.+|.++++.++..++++|.++...... +..
T Consensus 385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~-------~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 457 (528)
T 4b8j_A 385 FDIKKEAAWAISNATSGGSHDQIKYLVS-------EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVN 457 (528)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHH-------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 99999999999999985 5666666665 79999999999999999999999999999841100 122
Q ss_pred HHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827 508 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 508 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~ 549 (552)
.....+.+.|+++.|..+..+++++++++|.+.|.++....+
T Consensus 458 ~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 458 VFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 357788899999999999999999999999999999887643
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.6e-38 Score=330.83 Aligned_cols=415 Identities=15% Similarity=0.184 Sum_probs=362.6
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDM 197 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~ 197 (552)
...++.++..++++++.+|..|+..|.++.........+.++..|++|.|+++|.+ ++.++..|+++|.+++.+++..
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 46789999999999999999999999999765433334567789999999999984 4678999999999999998888
Q ss_pred HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 008827 198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS 277 (552)
Q Consensus 198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls 277 (552)
+..+++.|+++.|+.+|.++ ++.+++.|+++|++++.+++..+..+...|++|.++.++.+.++.++..++++|.+++
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 88888999999999999875 4889999999999999888889999999999999999999999999999999999999
Q ss_pred cccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHH
Q 008827 278 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA 357 (552)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~a 357 (552)
......... ....+++|.|+.+|.+++++++..|+++|++++...+...+.+.+.|+++.|+.++.++++.++..++++
T Consensus 244 ~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 244 RGKKPQPDW-SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CCSSSCCCH-HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCCcH-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 874233333 5668999999999999999999999999999998777777788889999999999999999999999999
Q ss_pred HHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh
Q 008827 358 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 437 (552)
Q Consensus 358 L~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~ 437 (552)
|++++.+ ++.....+++.++++.++.+|.++++.++..|+++|++++.+.++....+++.+ +++.|..+|.+ +++.
T Consensus 323 L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~-~~~~ 398 (530)
T 1wa5_B 323 VGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN--LIPPLVKLLEV-AEYK 398 (530)
T ss_dssp HHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--CHHHHHHHHHH-SCHH
T ss_pred HHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHhc-CCHH
Confidence 9999874 355677788889999999999999999999999999999998887888888777 79999999987 8899
Q ss_pred HHHHHHHHHHhhcCC-Ch--hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCC-------CCCH
Q 008827 438 IEIQGMYVLGNVATG-KE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS-------PGSS 507 (552)
Q Consensus 438 v~~~a~~~L~~la~~-~~--~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~-------~~~~ 507 (552)
++..++|+|+|++.+ .+ .+...+++ .|+++.|+.++.++++.++..|+++|.+++.... .+..
T Consensus 399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~-------~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~ 471 (530)
T 1wa5_B 399 TKKEACWAISNASSGGLQRPDIIRYLVS-------QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN 471 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCTHHHHHHHH-------TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 999999999999874 33 45666665 7899999999999999999999999999985210 0112
Q ss_pred HHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827 508 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 508 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~ 548 (552)
.....+.+.|+++.|..++.+++++++++|.++|.++....
T Consensus 472 ~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 472 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 35667889999999999999999999999999999988653
No 10
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2e-38 Score=334.58 Aligned_cols=449 Identities=14% Similarity=0.066 Sum_probs=364.5
Q ss_pred HhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhh
Q 008827 74 FDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNA 151 (552)
Q Consensus 74 ~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~ 151 (552)
...|+++.|+.+|++ ++.+|..|+.+|++++.+++.. ..+.. ..+.++.+++++++ +++.+|..|+.+|.+++..
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~--~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMR--SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHh--CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 557899999999996 6799999999999999765433 33322 24789999998875 5899999999999999875
Q ss_pred CCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827 152 SPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA 230 (552)
Q Consensus 152 ~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a 230 (552)
.. .+..+...|++|.|++++++ ++.++..|+++|.+++.+++..+..+.+.|++|.|++++.++ ++.++..+..+
T Consensus 91 ~~--~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~ 166 (529)
T 1jdh_A 91 RE--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDC 166 (529)
T ss_dssp HH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHH
T ss_pred ch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHH
Confidence 32 46667888999999999984 567899999999999988777777788999999999999875 47888999999
Q ss_pred HHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHH
Q 008827 231 LADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 309 (552)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~ 309 (552)
|.+++..+++.+..+.+.|+++.++.+++++ +...+..++.+|++++.+ +..+.. +.+.|+++.|+.++.+++++++
T Consensus 167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~-~~~~g~~~~L~~ll~~~~~~~~ 244 (529)
T 1jdh_A 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRLV 244 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH-HHHTTHHHHHHTTTTSSCHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHH-HHHCCCHHHHHHHHhCCChHHH
Confidence 9999988889999999999999999999865 456777889999999976 444555 7889999999999999999999
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-
Q 008827 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD- 388 (552)
Q Consensus 310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~- 388 (552)
..++++|.|++.+.+.. ....|+++.|+++++++++.++..++++|++++.+ +++.+..+.+.++++.+++++.+
T Consensus 245 ~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~L~~ll~~~ 320 (529)
T 1jdh_A 245 QNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRA 320 (529)
T ss_dssp HHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHHcc
Confidence 99999999999765432 12347899999999999999999999999999874 46788999999999999999975
Q ss_pred -CChhHHHHHHHHHHHhhcCCcch---HHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHh
Q 008827 389 -PEPSVQEQALALVRNLVDGRINS---VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL 464 (552)
Q Consensus 389 -~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~ 464 (552)
++++++..++++|+|++.++++. ...+...+ .++.+.++|.+..++.++..++|+|+|++.+++ .+..+++
T Consensus 321 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~-- 395 (529)
T 1jdh_A 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY--GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE-- 395 (529)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT--CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC--ChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHH--
Confidence 34799999999999998876542 34566666 689999999984446999999999999998655 4566665
Q ss_pred hHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCC------------------CHHHHHHHHHCCcHHHHHhhh
Q 008827 465 LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG------------------SSGRLVKLHDAGIVSHVKNMV 526 (552)
Q Consensus 465 ~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~------------------~~~~~~~l~~~g~~~~L~~ll 526 (552)
.|+++.|+.+|+++++.+|+.|+|+++|.+.. +++ ..+....+.+.|++++|++++
T Consensus 396 -----~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~-~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll 469 (529)
T 1jdh_A 396 -----QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV-EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL 469 (529)
T ss_dssp -----TTHHHHHHHHHHHHHHHHC-----------CB-TTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG
T ss_pred -----cCCHHHHHHHHHHHhHHHHHHHhcccCchhhh-ccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHH
Confidence 79999999999998999999888888872110 111 234456789999999999999
Q ss_pred cCCCccHHHHHHHHHHHHhh
Q 008827 527 NDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 527 ~~~~~~v~~~a~~al~~~~~ 546 (552)
.++++++++.+.++|.++..
T Consensus 470 ~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 470 YSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp GCSCHHHHHHHHHHHHHHTT
T ss_pred cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998763
No 11
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=334.10 Aligned_cols=492 Identities=12% Similarity=0.098 Sum_probs=400.1
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCccccc-ccchHHHHHhhcCC-CCcchHHHHHHHHhhcCChhhHHHHHhcCchHH
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQ-EENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQKLLFDAGVLKR 81 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~-~~~i~~l~~ll~~~-~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~ 81 (552)
..+++.+...|+.+|.+++...... ..++. .+.++.|+++|.+. ++.++..++.+|.+++..++++..+.+.|+++.
T Consensus 24 ~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~ 102 (644)
T 2z6h_A 24 NDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPA 102 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHH
Confidence 4578899999999999998776533 34443 47899999999864 788999999999999999889999999999999
Q ss_pred HHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827 82 LTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG 160 (552)
Q Consensus 82 L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~ 160 (552)
|+.+|++ ++.++..|+.+|.+++..++.....+.+ .+.++.++.+++++++.++..++.+|.+++...+ ..+..+
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~~i 178 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL---AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLII 178 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH---TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH---CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc-HHHHHH
Confidence 9999997 6799999999999999876555444432 6889999999999999999999999999997433 245667
Q ss_pred hHHhHHHHHHHhcCCC--CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC
Q 008827 161 IKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL 238 (552)
Q Consensus 161 ~~~g~i~~Lv~ll~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~ 238 (552)
...|+++.|++++.+. ..++..++.+|.+++. ++..+..+++.|+++.|++++.+. ++.++..++++|.+++...
T Consensus 179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGC
T ss_pred HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcc
Confidence 8889999999999844 3567788999999985 456678888999999999998876 4889999999999999754
Q ss_pred hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-C-CHHHHHHHHHHH
Q 008827 239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-T-STAVQVAALGAI 316 (552)
Q Consensus 239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~-~~~v~~~a~~aL 316 (552)
+.. ....+++|.|+.+++++++.++..++++|++|+......+.. +.+.|+++.|+.+|.+ + .++++..|+++|
T Consensus 256 ~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~-v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 256 TKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM-VCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp TTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH-HHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 321 223478999999999999999999999999998875444555 7889999999999985 3 389999999999
Q ss_pred HHhhcCCc---hhHHHHHhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC--
Q 008827 317 SNIVVDFT---TRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE-- 390 (552)
Q Consensus 317 ~nl~~~~~---~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~-- 390 (552)
+|++...+ ..+..+.+.|+++.|++++.+++ +.++..++|+|+|++.+ ++.+..+.+.++++.|++++.+.+
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchh
Confidence 99997543 23445788999999999999875 69999999999999874 456788889999999999997633
Q ss_pred --------------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827 391 --------------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 450 (552)
Q Consensus 391 --------------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la 450 (552)
.+++..++.+|++++... .....+.+.+ +++.|+++|.+ ++++++..++++|.+++
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~--~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLN--TIPLFVQLLYS-PIENIQRVAAGVLCELA 485 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTT--CHHHHHHHTTC-SCHHHHHHHHHHHHHHH
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCC--cHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 456778888888888653 3444555556 78999999988 88999999999999998
Q ss_pred CCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC
Q 008827 451 TGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND 528 (552)
Q Consensus 451 ~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~ 528 (552)
.. +..+..+.+ .|+++.|+.+++++++.+|..|+++|.+++.. ......+.+ .++.+..+..+
T Consensus 486 ~~-~~~~~~i~~-------~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~---~~~~~~~~~----~~~il~~~~~~ 548 (644)
T 2z6h_A 486 QD-KEAAEAIEA-------EGATAPLTELLHSRNEGVATYAAAVLFRMSED---KPQDYKKRL----SVELTSSLFRT 548 (644)
T ss_dssp TS-HHHHHHHHH-------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT---SCHHHHHHH----HHHHHHHHSCC
T ss_pred cC-HHHHHHHHH-------cCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc---CcHhhhccc----chHHHHHHHhC
Confidence 64 445555544 88999999999999999999999999999962 333333332 25666666653
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=5e-37 Score=317.05 Aligned_cols=413 Identities=16% Similarity=0.185 Sum_probs=353.6
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH-hHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHHH
Q 008827 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT-KLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~-g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~ 198 (552)
.++.+++.++++++.+|..|+.+|..+.........+..+.. |++|.|++++++ ++.++..|+++|.+++..+++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378899999999999999999999998653222223445566 999999999984 46789999999999999888877
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC-CCHHHHHHHHHHHHHhh
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVS 277 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~-~~~~v~~~a~~~L~~ls 277 (552)
+.+++.|+++.|+++|.++ ++.+++.|+++|++++.+++..+..+.+.|++|.++.++++ .++.++..++++|++++
T Consensus 101 ~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 7788899999999999875 48899999999999999888889999999999999999995 78999999999999999
Q ss_pred ccc-ccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827 278 RSI-KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 356 (552)
Q Consensus 278 ~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 356 (552)
... +..... + ..+++|.|+.++.+++++++..|+++|++++......+..+.+.|+++.|++++.++++.++..+++
T Consensus 179 ~~~~~~~~~~-~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 179 RGKSPPPEFA-K-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CCSSSCCCGG-G-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCCHH-H-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 764 232323 3 3799999999999999999999999999999877777778888999999999999999999999999
Q ss_pred HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCch
Q 008827 357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 436 (552)
Q Consensus 357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~ 436 (552)
+|++++.+. +.....+.+.++++.+++++.++++.++..++++|++++.+.++..+.+++.+ +++.+..+|.+ +++
T Consensus 257 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~~l~~-~~~ 332 (450)
T 2jdq_A 257 AVGNIVTGD-DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN--IFPALISILQT-AEF 332 (450)
T ss_dssp HHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHHHH-SCH
T ss_pred HHHHHhhCC-hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHhc-CCH
Confidence 999998743 45667788889999999999999999999999999999998877778888776 89999999988 889
Q ss_pred hHHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCC-------CCHH
Q 008827 437 EIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSSG 508 (552)
Q Consensus 437 ~v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~-------~~~~ 508 (552)
.++..++|+|+|++.+ ++...+.+++ .|+++.|+.+++++++.++..|+++|.+++..... ....
T Consensus 333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~ 405 (450)
T 2jdq_A 333 RTRKEAAWAITNATSGGSAEQIKYLVE-------LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINP 405 (450)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHH-------HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHH-------CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhH
Confidence 9999999999999974 5556666665 79999999999999999999999999999851100 0113
Q ss_pred HHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827 509 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 509 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~ 549 (552)
....+.+.|+++.|..+.++++.+++++|..+|.++....+
T Consensus 406 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 406 YCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 45678889999999999988889999999999999886543
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.9e-38 Score=329.13 Aligned_cols=369 Identities=15% Similarity=0.168 Sum_probs=325.3
Q ss_pred HHHHHHHhcC-CCCchhchHHHHHHHhhcC--CHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827 165 LINNLLELLD-DPGRVGDEASFAFSSLIAE--KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 241 (552)
Q Consensus 165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~ 241 (552)
.++.+++.+. ++.+.+..|+..+.++.+. +|.. ..+++.|+||+|+++|+.. .++.++..|+++|++++..+++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi-~~ii~~G~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI-DNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH-HHHHHTTHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH-HHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHH
Confidence 4788888888 5678899999999988754 3333 5678999999999999866 35889999999999999988899
Q ss_pred HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC-----HHHHHHHHHHH
Q 008827 242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS-----TAVQVAALGAI 316 (552)
Q Consensus 242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-----~~v~~~a~~aL 316 (552)
++.+++.|++|.|+.+|++++..++..|+++|++++...+..+.. +.+.|++++|+.++.+++ ..++..+++++
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~-v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH-HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875666655 789999999999998653 46788999999
Q ss_pred HHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHH
Q 008827 317 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ 396 (552)
Q Consensus 317 ~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~ 396 (552)
.|++.+...........|+++.|+++++++++.++..++|+|.+++.+ +++....+.+.|+++.|++++.++++.++..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-hhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 999986655444455578999999999999999999999999999874 4456677888999999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHH
Q 008827 397 ALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 476 (552)
Q Consensus 397 a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~L 476 (552)
++++|+|++.+++.....+++.+ +++.|..+|.+ ++++++..++|+|+|++.+++.++..+++ .|+++.|
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g--~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~-------~g~i~~L 363 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAG--ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVN-------HGLVPFL 363 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTT--GGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHhhcc--chHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHh-------cCCHHHH
Confidence 99999999999888888888887 68888888887 88999999999999999999888888876 8999999
Q ss_pred HHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827 477 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 550 (552)
Q Consensus 477 v~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~ 550 (552)
+.+|++++..+|++|+|+|+|++. +++.++...+.+.|++++|+++++++++++...+.++|.+|.+.+++
T Consensus 364 v~lL~~~~~~v~~~Aa~aL~Nl~~---~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 434 (510)
T 3ul1_B 364 VGVLSKADFKTQKEAAWAITNYTS---GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434 (510)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHc---cCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 999999999999999999999995 46788999999999999999999998999999999999999987664
No 14
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.8e-37 Score=336.63 Aligned_cols=477 Identities=14% Similarity=0.080 Sum_probs=381.9
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 114 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~ 114 (552)
..++.++..|.++++.++..++..+... ++..+ ..|+++.|+.+|.+ +..+|..|+.+|++|+...+.. ..+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~-~~i 187 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHH-HHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhH-HHH
Confidence 3578899999998888888888887744 23333 38999999999987 6789999999999999865433 333
Q ss_pred ccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhc
Q 008827 115 VGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA 192 (552)
Q Consensus 115 ~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~ 192 (552)
.. ..+.++.++.++++ +++.+|..|+.+|.+++.... .+..+...|++|.|+++|++ ++.++..|+++|.+++.
T Consensus 188 ~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~--~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 188 MR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE--GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp TT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred Hh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 32 24689999998875 499999999999999887532 35567788999999999994 56799999999999999
Q ss_pred CCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH-HHHHHHHH
Q 008827 193 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACM 271 (552)
Q Consensus 193 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~-~v~~~a~~ 271 (552)
+.+..++.+.+.|+++.|+++|.+. +..++..++.+|..++..+++.+..+.+.|+++.++.++++++. ..+..++.
T Consensus 264 ~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~ 341 (780)
T 2z6g_A 264 HQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341 (780)
T ss_dssp HSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8777778788899999999999875 47888999999999998788899999999999999999997654 56678899
Q ss_pred HHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHH
Q 008827 272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR 351 (552)
Q Consensus 272 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 351 (552)
+|.+++.+ ...+.. +.+.|+++.|+.++.+.+++++..|+++|.+++...... ....++++.|++++++.++.+|
T Consensus 342 aL~~Ls~~-~~~~~~-i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr 416 (780)
T 2z6g_A 342 VLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVV 416 (780)
T ss_dssp HHHHHHTS-TTHHHH-HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhhcC-hHHHHH-HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHH
Confidence 99999976 444545 788999999999999999999999999999999765431 1234789999999999999999
Q ss_pred HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-CC-hhHHHHHHHHHHHhhcCCcch---HHHHHhhcCchHHHH
Q 008827 352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PE-PSVQEQALALVRNLVDGRINS---VEYIFAEDGIILDAV 426 (552)
Q Consensus 352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~~~~~~l 426 (552)
..|+++|++++.+ +++.+..+.+.++++.|++++.+ ++ ..++..++++|+|++..+++. ...+...+ .++.|
T Consensus 417 ~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~--~l~~L 493 (780)
T 2z6g_A 417 TCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY--GLPVV 493 (780)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC--CHHHH
Confidence 9999999999874 45788889999999999999975 33 489999999999998765542 23555555 68999
Q ss_pred HHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChh--------------------
Q 008827 427 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR-------------------- 486 (552)
Q Consensus 427 ~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~-------------------- 486 (552)
.++|.+...+.++..++|+|+|++.+++ .+..+.+ .|+++.|+.+|.+++..
T Consensus 494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~ 565 (780)
T 2z6g_A 494 VKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE-------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 565 (780)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHH-------TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHH-------CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence 9999884446999999999999998654 4555655 79999999999876544
Q ss_pred --HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 487 --LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 487 --~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
++..++.+|.+++. ..+....+.+.|++++|++++.+++++++..|..+|.++..
T Consensus 566 ~~v~~~a~~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 566 EEIVEACTGALHILAR-----DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp HHHHHHHHHHHHHHTT-----SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc-----ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 44556666666663 34556678899999999999999999999999999988753
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=4e-37 Score=323.31 Aligned_cols=370 Identities=15% Similarity=0.167 Sum_probs=325.2
Q ss_pred HHHHHHHhcC-CCCchhchHHHHHHHhhcCCHH-HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH
Q 008827 165 LINNLLELLD-DPGRVGDEASFAFSSLIAEKED-MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242 (552)
Q Consensus 165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~ 242 (552)
.++.+++.+. ++.+.+..|+..+.++.+.+.. ....+++.|++|.|+++|... .++.++..|+++|++++.++++.+
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4677888877 5667888999999887654321 235678999999999999766 368899999999999999888888
Q ss_pred HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC-----HHHHHHHHHHHH
Q 008827 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS-----TAVQVAALGAIS 317 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-----~~v~~~a~~aL~ 317 (552)
..+++.|++|.|+.+|++++..++..|+++|++++...+..+.. +.+.|++++|+.+|..++ ..++..++|++.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~-i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH-HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999875666666 789999999999997543 467889999999
Q ss_pred HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHH
Q 008827 318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA 397 (552)
Q Consensus 318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a 397 (552)
|++.+..+........|++|.|++++.++++.++..++|+|.+++.+ +++....+.+.|+++.|+.++.++++.++..+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh-hhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 99987655444455578999999999999999999999999999874 45667778899999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHH
Q 008827 398 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII 477 (552)
Q Consensus 398 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv 477 (552)
+++|+|++.+++.....++..+ +++.|..+|.+ ++++++..++|+|+|++.+++.++..+++ .|+++.|+
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g--~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~-------~g~i~~Lv 383 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAG--ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVN-------HGLVPFLV 383 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTT--GGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------TTHHHHHH
T ss_pred HHHHHHHHccchHHHHHHhhcc--cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHh-------cCcHHHHH
Confidence 9999999998888888888887 78999999988 89999999999999999999888888876 89999999
Q ss_pred HhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827 478 KFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 550 (552)
Q Consensus 478 ~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~ 550 (552)
.+|++++..++..|+|+|+|++. +++.++...+.+.|++++|+++++++++++...+.+||.+|.+.+++
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl~~---~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 453 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNYTS---GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 453 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHH---HSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999995 46788999999999999999999998999999999999999987654
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.3e-35 Score=307.04 Aligned_cols=407 Identities=14% Similarity=0.163 Sum_probs=346.8
Q ss_pred cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCCh-hhhhhhccccCCccHHHHHHHHhcCC-hhhHHHHHHHHHHHhhhC
Q 008827 76 AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP-EVVSQFVGPDTGRTLSCIIEIVKDRF-ARTRLLASLCLIVIRNAS 152 (552)
Q Consensus 76 ~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~~~~l~~l~~ll~~~~-~~vr~~A~~~L~~l~~~~ 152 (552)
...++.|+..|.+ ++.+|..|+.+|++++...+ .....+. ..+.++.++.++++++ +.+|..|+++|.+++...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVI---QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHH---HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH---HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3458999999987 67899999999999975543 2223333 2689999999999887 999999999999999854
Q ss_pred CCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHH
Q 008827 153 PCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL 231 (552)
Q Consensus 153 ~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL 231 (552)
+. ....++..|++|.|+++|.+ ++.++..|+++|++++.+++.++..+.+.|+++.|+.+|... .++.++..++++|
T Consensus 150 ~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L 227 (528)
T 4b8j_A 150 SE-NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTL 227 (528)
T ss_dssp HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHH
T ss_pred HH-HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 43 45667788999999999984 568999999999999999999888899999999999988544 3588999999999
Q ss_pred HHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHH
Q 008827 232 ADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVA 311 (552)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~ 311 (552)
.+++...+.. ......|++|.|+.++.++++.++..++++|.+++...+..... +.+.|+++.|+.+|.++++.++..
T Consensus 228 ~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~v~~~ 305 (528)
T 4b8j_A 228 SNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA-VIEAGVCPRLVELLLHPSPSVLIP 305 (528)
T ss_dssp HHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHH-HHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred HHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH-HHHcCHHHHHHHHHcCCChhHHHH
Confidence 9999865333 23445799999999999999999999999999999774433334 678899999999999999999999
Q ss_pred HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827 312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE 390 (552)
Q Consensus 312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~ 390 (552)
|+++|+|++.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.+ +++....+++.++++.|++++.+.+
T Consensus 306 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~ 384 (528)
T 4b8j_A 306 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAE 384 (528)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 99999999998888888899999999999999998 999999999999999874 5567778888999999999999999
Q ss_pred hhHHHHHHHHHHHhhcC-CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-----------hHH
Q 008827 391 PSVQEQALALVRNLVDG-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-----------HKE 458 (552)
Q Consensus 391 ~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-----------~~~ 458 (552)
++++..|+++|+|++.+ .++...++++.+ +++.|..+|.+ ++++++..++++|.++....+. ...
T Consensus 385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~--~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 461 (528)
T 4b8j_A 385 FDIKKEAAWAISNATSGGSHDQIKYLVSEG--CIKPLCDLLIC-PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ 461 (528)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTT--CHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCC--CHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHH
Confidence 99999999999999876 667778888777 79999999988 8999999999999999863322 233
Q ss_pred HHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 459 AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 459 ~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.+. +.|+++.+..+..+++.+++..|.+++.++..
T Consensus 462 ~i~-------~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 462 MID-------EAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHH-------HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHH-------HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 333 37888999999999999999999999999875
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.2e-34 Score=299.21 Aligned_cols=404 Identities=15% Similarity=0.168 Sum_probs=340.1
Q ss_pred chHHHHHhhcC-CHHHHHHHHHHHHHHhc--CChhhhhhhccccCC-ccHHHHHHHHhcC-ChhhHHHHHHHHHHHhhhC
Q 008827 78 VLKRLTSLLGG-SLIQRDASLESIATIFK--NNPEVVSQFVGPDTG-RTLSCIIEIVKDR-FARTRLLASLCLIVIRNAS 152 (552)
Q Consensus 78 ~i~~L~~lL~~-~~~v~~~al~~L~~l~~--~~~~~~~~~~~~~~~-~~l~~l~~ll~~~-~~~vr~~A~~~L~~l~~~~ 152 (552)
.++.|++.|++ ++.+|..|+.+|+.++. .++... .+. .. +.++.++++++++ ++.+|..|+++|.+++...
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~-~~~---~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID-EVI---STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHH-HHH---TSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHH-HHH---HcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 37889999986 67899999999999764 333332 222 24 7899999999988 8999999999999998754
Q ss_pred CCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHH
Q 008827 153 PCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL 231 (552)
Q Consensus 153 ~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL 231 (552)
+. ....++..|++|.|++++++ ++.++..|+++|.+++.+++..+..+++.|+++.|++++.+. .++.++..++++|
T Consensus 97 ~~-~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L 174 (450)
T 2jdq_A 97 SL-QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWAL 174 (450)
T ss_dssp HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 33 23456678999999999994 568999999999999999988888888999999999999864 3588999999999
Q ss_pred HHhhcCC-hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHH
Q 008827 232 ADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQV 310 (552)
Q Consensus 232 ~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~ 310 (552)
++++.+. +..+..+ ..+++|.++.+++++++.++..++++|.+++...+..... +...|++|.|+.+|.+++++++.
T Consensus 175 ~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~ 252 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQA-VIDAGVCRRLVELLMHNDYKVVS 252 (450)
T ss_dssp HHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHH-HHHTTTHHHHHHHTTCSCHHHHH
T ss_pred HHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHH-HHHcCcHHHHHHHHCCCchhHHH
Confidence 9999754 3332222 3789999999999999999999999999999864433333 67789999999999999999999
Q ss_pred HHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827 311 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE 390 (552)
Q Consensus 311 ~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~ 390 (552)
.|+++|++++.+.+...+.+.+.|+++.|+.++.++++.+|..|+++|++++.+ .++....+++.++++.+++++.+++
T Consensus 253 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 999999999988877777888899999999999999999999999999999874 3566777888899999999999999
Q ss_pred hhHHHHHHHHHHHhhcC-CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-----------hHH
Q 008827 391 PSVQEQALALVRNLVDG-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-----------HKE 458 (552)
Q Consensus 391 ~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-----------~~~ 458 (552)
++++..++++|+|++.+ .++..+.+++.+ +++.|.+++.+ ++++++..++++|.+++...+. ...
T Consensus 332 ~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~--~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~ 408 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGGSAEQIKYLVELG--CIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCA 408 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHT--CHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCC--CHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHH
Confidence 99999999999999875 566777788777 79999999988 7899999999999999874332 122
Q ss_pred HHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 459 AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 459 ~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.+. +.|+++.|..++.+++..++..|..+|.++..
T Consensus 409 ~l~-------~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 409 LIE-------EAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHH-------HHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-------HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 332 27888999999999999999999999999885
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=6.1e-35 Score=301.41 Aligned_cols=378 Identities=16% Similarity=0.134 Sum_probs=309.5
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcC-CHHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAE-KEDM 197 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~-~~~~ 197 (552)
...++.++.+++++++.+|..|+.+|.+++.... ..+..++..|+||.|+++|+ .+.+++..|+++|.+|+.+ ++++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 5689999999999999999999999999997543 24667888999999999998 4578999999999999985 6889
Q ss_pred HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC------------------
Q 008827 198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA------------------ 259 (552)
Q Consensus 198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~------------------ 259 (552)
+..++++|+||.|+++|... .+..+++.++.+|++|+. +++++..+++ +++|.|++++.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999875 247789999999999987 5678888885 67999999871
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccchhhhc-cCcHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCch-------
Q 008827 260 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMN-ETIVIPLVRLLDD------TSTAVQVAALGAISNIVVDFTT------- 325 (552)
Q Consensus 260 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~-~~~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~~~------- 325 (552)
..+..+++.|+++|+||+...++.+.. +.+ .|+++.|+.++++ .+...++.|+++|.||+.....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~-i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRK-LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHH-HHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHH-HHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 235799999999999999876565666 555 5778899999963 4678999999999999865210
Q ss_pred ------------------hHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCCh---HhHHHHHHhhcHHHHH
Q 008827 326 ------------------RRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED---KCKEEIFMELTASLLA 383 (552)
Q Consensus 326 ------------------~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~---~~~~~i~~~~~~~~l~ 383 (552)
..+.+.+.++++.|+.++. +.++.++++|+++|.|++.+..+ ..+..+.+.++++.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 0111223456788899996 56899999999999999875432 2344555688999999
Q ss_pred hhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccC-------chhHHHHHHHHHHhhcCCChhh
Q 008827 384 SLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS-------KAEIEIQGMYVLGNVATGKESH 456 (552)
Q Consensus 384 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~-------~~~v~~~a~~~L~~la~~~~~~ 456 (552)
++|.+++..+++.++++|+|++.+.. .+.++..+ +++.|+++|.+.. ++++...++++|.|++.+++.+
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g--~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~ 437 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDAR--NKELIGKH--AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHH--HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhC--CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999998653 34556666 7999999998732 3578999999999999988888
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCc
Q 008827 457 KEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI 518 (552)
Q Consensus 457 ~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~ 518 (552)
++.+++ .|+++.|+.+++++ .+.+++.|+++|++++. ..+.+..+.+.|.
T Consensus 438 ~~~I~~-------~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~-----~~elr~~~kk~G~ 489 (584)
T 3l6x_A 438 AKKLRE-------TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-----YKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHH-------TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTTTC
T ss_pred HHHHHH-------CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc-----CHHHHHHHHHcCC
Confidence 888886 89999999999986 78999999999999984 4555555555553
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=296.77 Aligned_cols=365 Identities=18% Similarity=0.155 Sum_probs=291.1
Q ss_pred HHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCC----------ChhhHHHHHHHHHHh
Q 008827 165 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL----------HPRRFEGILLALADM 234 (552)
Q Consensus 165 ~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~----------~~~~~~~a~~aL~~l 234 (552)
.++.|++.+...+.- +..+.|..+.... ..+..+++.|++|.|+++|...+. +++++..|+++|.++
T Consensus 33 ~~~~l~~~~~~~~~~--~~~~~ll~~~~~~-~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKD--DMSRTLLAMSSSQ-DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp ------------CCH--HHHHHHHHHHSST-THHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHcCC-cHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 356666666522111 4666677776544 455778899999999999986532 268999999999999
Q ss_pred hcCChhHHHHHHhcccH----------HHHHHhcCCCC--HH-----HHH-------HHHHHHHHhhcccccccchhhhc
Q 008827 235 CSKLECCRSRCLSLQVL----------KLVVDALAHDS--SD-----VRS-------AACMCLRSVSRSIKNLSAGSFMN 290 (552)
Q Consensus 235 ~~~~~~~~~~~~~~~~l----------~~lv~~L~~~~--~~-----v~~-------~a~~~L~~ls~~~~~~~~~~~~~ 290 (552)
+..+++......+.+++ +.+++++.+.. .+ ++. .|+++|.+++.+ +..|.. +.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~-i~~ 187 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA-MNE 187 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH-HHH
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH-HHH
Confidence 99777766666666666 66777787542 12 444 899999999887 566766 899
Q ss_pred cCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCchhHHHHHh-hCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 291 ETIVIPLVRLLDD-----------TSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRAL 358 (552)
Q Consensus 291 ~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL 358 (552)
.|++++|+.+|.. .++.++..|+|+|.|++.+.+..+..+.. .|++|.|+++|.+++++++..|+|+|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999941 35789999999999999887767766654 46699999999999999999999999
Q ss_pred HHhcccCChHhHHHHHHhhcHHHHHhhh-cCCChhHHHHHHHHHHHhhcCCcchHHHHH-hhcCchHHHHHHHhcccCch
Q 008827 359 RNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYIF-AEDGIILDAVGRQLRIASKA 436 (552)
Q Consensus 359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~~~~~~l~~~L~~~~~~ 436 (552)
.|++...++++|..+.+.|+++.|+++| .+.++.+++.++.+|+|++.+.++....+. ..| .++.|+++|.+..+.
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G--al~~Lv~LL~~~~~~ 345 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG--ALAFLVGTLTYRSQT 345 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT--HHHHHHHHTTCCCSS
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC--cHHHHHHHhcCCCCc
Confidence 9998855567899999999999999974 667899999999999999985544445555 445 799999999873322
Q ss_pred ---hHHHHHHHHHHhhcC---CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHH
Q 008827 437 ---EIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL 510 (552)
Q Consensus 437 ---~v~~~a~~~L~~la~---~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 510 (552)
++++.++|+|.|++. +++.+++.+++ .|+++.|+.+|++++..++++|+|+|.|++. ++.+++
T Consensus 346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-------~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~----~~~~~~ 414 (458)
T 3nmz_A 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRE-------NNCLQTLLQHLKSHSLTIVSNACGTLWNLSA----RNPKDQ 414 (458)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS----SCHHHH
T ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-------cccHHHHHHHHcCCChHHHHHHHHHHHHHHc----CCHHHH
Confidence 589999999999996 77778888876 8999999999999999999999999999995 578889
Q ss_pred HHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 511 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 511 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
..+.+.|++++|+++++++++.+++.|.+||.++...
T Consensus 415 ~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999864
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.5e-34 Score=304.57 Aligned_cols=409 Identities=13% Similarity=0.122 Sum_probs=346.4
Q ss_pred ccchHHHHHhhcCCCCcchHHHHHHHHhhcCC--hhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhh
Q 008827 35 EENMEFLLSLLNNESENVSGLGASIISHSCKT--SLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEV 110 (552)
Q Consensus 35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~--~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~ 110 (552)
...++.++..|+++++.++..|+..|.++... ...+..+.+.|+++.|+.+|.+ ++.+|..|+.+|++++..+++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 46789999999999999999999999998543 3345678889999999999986 5789999999999999887766
Q ss_pred hhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHH
Q 008827 111 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSS 189 (552)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~ 189 (552)
...+.. .++++.++.+++++++.+|..|+++|.+++...+. ..+.+...|++|.|++++.+ +..++..|+++|++
T Consensus 166 ~~~~~~---~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 166 TKVVVD---ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHH---TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc-chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 555543 68899999999999999999999999999976432 35567778999999999985 45789999999999
Q ss_pred hhcCC-HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHH
Q 008827 190 LIAEK-EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA 268 (552)
Q Consensus 190 l~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~ 268 (552)
++.+. +.. ......++++.|+++|.++ ++.++..++++|++++...++....+.+.|++|.++.+|.++++.++..
T Consensus 242 L~~~~~~~~-~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~ 318 (530)
T 1wa5_B 242 LCRGKKPQP-DWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318 (530)
T ss_dssp HHCCSSSCC-CHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HhCCCCCCC-cHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHH
Confidence 99765 322 3345678999999998876 4889999999999999877777788888999999999999999999999
Q ss_pred HHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH
Q 008827 269 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 348 (552)
Q Consensus 269 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 348 (552)
++++|++++...+..... +.+.|+++.|+.+|.++++.++..|+++|+|++.+.....+.+++.|+++.|+.++.++++
T Consensus 319 a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 397 (530)
T 1wa5_B 319 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY 397 (530)
T ss_dssp HHHHHHHHTTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred HHHHHHHHHcCCHHHHHH-HHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 999999999765544444 6778999999999999999999999999999998777777788899999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc-----------hHHHH
Q 008827 349 TIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN-----------SVEYI 415 (552)
Q Consensus 349 ~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----------~~~~i 415 (552)
.++..++|+|++++...++ +....+.+.++++.|+.++.++++.++..++++|.+++...+. ....+
T Consensus 398 ~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l 477 (530)
T 1wa5_B 398 KTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 477 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHH
Confidence 9999999999999886555 6778888999999999999999999999999999999864322 22333
Q ss_pred HhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827 416 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454 (552)
Q Consensus 416 ~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~ 454 (552)
.+.+ .++.+..++.+ +++.+++.+.++|.++....+
T Consensus 478 ~~~g--~~~~L~~L~~~-~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 478 EKAG--GMEKIFNCQQN-ENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHTT--HHHHHHGGGGC-SCHHHHHHHHHHHHHHSSSCC
T ss_pred HHcC--cHHHHHHHHcC-CCHHHHHHHHHHHHHHCCccc
Confidence 3444 57888776666 899999999999999886443
No 21
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-34 Score=299.60 Aligned_cols=366 Identities=15% Similarity=0.165 Sum_probs=302.2
Q ss_pred HHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC-Ch
Q 008827 162 KTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LE 239 (552)
Q Consensus 162 ~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~ 239 (552)
..+.+|.|+++|. .+++++..|+++|.+++..++.++..+++.|+||.|+++|.+++ +.+++.|+++|.+++.. ++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~--~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK--KEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS--HHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC--HHHHHHHHHHHHHHHccCCH
Confidence 4578999999998 45678999999999999989999999999999999999998864 88999999999999984 68
Q ss_pred hHHHHHHhcccHHHHHHhcCC-CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------------
Q 008827 240 CCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD---------------- 302 (552)
Q Consensus 240 ~~~~~~~~~~~l~~lv~~L~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~---------------- 302 (552)
+++..+.+.|++|.|+++|++ .+.++++.++.+|++|+.+ +..+.. +.. +++|+|++++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~-I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKME-IVD-HALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHH-HHH-HTHHHHHHHTHHHHHCCC---------
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHH-HHh-ccHHHHHHHHhcccccccccccccccc
Confidence 899999999999999999996 6889999999999999986 455555 564 57999999871
Q ss_pred --CCCHHHHHHHHHHHHHhhcCCchhHHHHHhh-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhcccCChHh----
Q 008827 303 --DTSTAVQVAALGAISNIVVDFTTRRSTFIRL-GGVKLLVQLSKS------MDSTIRLNALRALRNLIFLAEDKC---- 369 (552)
Q Consensus 303 --~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~~~~---- 369 (552)
.+++++++.|+++|.||+...+..++.+.+. |+++.|+.++++ .+...+++|+|+|.||++....+.
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 2368999999999999998877778888885 566899999874 467899999999999987421100
Q ss_pred --------------------HHHHHHhhcHHHHHhhhc-CCChhHHHHHHHHHHHhhcCCcc---hHHHHHhhcCchHHH
Q 008827 370 --------------------KEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRIN---SVEYIFAEDGIILDA 425 (552)
Q Consensus 370 --------------------~~~i~~~~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~~~~~~~ 425 (552)
.+.+.+.++++.++.++. +.++.++++|+++|+|++.++.. .++.++.+.+ .++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~-glp~ 359 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK-ALSA 359 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH-HHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC-cHHH
Confidence 011122345678888995 56899999999999999987632 2333444322 6999
Q ss_pred HHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--------ChhHHHHHHHHHHh
Q 008827 426 VGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--------DSRLRTAAVWAVLN 497 (552)
Q Consensus 426 l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--------~~~~~~~a~~~l~~ 497 (552)
|+.+|.+ +++.++..++|+|+|++.+.. .+. ++. .++++.|+.+|.++ ..++...|+++|.|
T Consensus 360 Lv~LL~s-~~~~v~~~A~~aL~nLs~~~~-~~~-~I~-------~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 360 IADLLTN-EHERVVKAASGALRNLAVDAR-NKE-LIG-------KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp HHHGGGC-SCHHHHHHHHHHHHHHHTTCS-CHH-HHH-------HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHhCChh-HHH-HHH-------hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 9999988 889999999999999998654 344 445 78999999999986 35788999999999
Q ss_pred hcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC--CccHHHHHHHHHHHHhhh
Q 008827 498 LTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 498 l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~al~~~~~~ 547 (552)
++. ++.++.+.+.+.|++++|+++++++ .+.+++.|.++|.++...
T Consensus 430 L~a----~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 430 VIA----ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHT----TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred Hhc----CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 985 6788999999999999999999875 678899999999988643
No 22
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=297.79 Aligned_cols=361 Identities=16% Similarity=0.148 Sum_probs=286.8
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--C-----------CchhchHHHHHH
Q 008827 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--P-----------GRVGDEASFAFS 188 (552)
Q Consensus 122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~-----------~~v~~~a~~~L~ 188 (552)
.++.+...+.+.++.. ..+.|..+....+ ....+++.|++|.|+++|.. . ++++.+|+|+|.
T Consensus 33 ~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~--~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDD---MSRTLLAMSSSQD--SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp ------------CCHH---HHHHHHHHHSSTT--HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHH---HHHHHHHHHcCCc--HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 4555666666655552 4555555655433 23567889999999999983 2 378999999999
Q ss_pred HhhcCCHHHHHHHHHhCcH----------HHHHHhhhcCC--CC-h--hhHH-------HHHHHHHHhhcCChhHHHHHH
Q 008827 189 SLIAEKEDMQKLAFEVNGV----------DKLYNHLQKGS--LH-P--RRFE-------GILLALADMCSKLECCRSRCL 246 (552)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~i----------~~L~~~L~~~~--~~-~--~~~~-------~a~~aL~~l~~~~~~~~~~~~ 246 (552)
|++...++..+...+.+.+ +.+++++.... .+ . .+++ +|+++|++++. ++++|+.+.
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~ 186 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMN 186 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 9999888777766677776 55666665542 01 0 0333 89999999975 589999999
Q ss_pred hcccHHHHHHhcCC-----------CCHHHHHHHHHHHHHhhcccccccchhhh-ccCcHHHHHHhhcCCCHHHHHHHHH
Q 008827 247 SLQVLKLVVDALAH-----------DSSDVRSAACMCLRSVSRSIKNLSAGSFM-NETIVIPLVRLLDDTSTAVQVAALG 314 (552)
Q Consensus 247 ~~~~l~~lv~~L~~-----------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~ 314 (552)
+.|+++.|+.+|.. .++.++..|+++|.+|+...+..+.. +. ..|.+|+|+++|.++++++++.|+|
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~-i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 265 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-LCSMKGCMRALVAQLKSESEDLQQVIAS 265 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHH-HHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999941 34689999999999999875444433 43 4567999999999999999999999
Q ss_pred HHHHhhcC-CchhHHHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCChHhHHHHH-HhhcHHHHHhhhcCCCh
Q 008827 315 AISNIVVD-FTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIF-MELTASLLASLICDPEP 391 (552)
Q Consensus 315 aL~nl~~~-~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~-~~~~~~~l~~ll~~~~~ 391 (552)
+|.||+.+ ...++..+.+.|+++.|+++ +.++++.+++.++.+|.|++.+. .+.+..+. ..|+++.|+++|.+++.
T Consensus 266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~-~~nk~~I~~~~Gal~~Lv~LL~~~~~ 344 (458)
T 3nmz_A 266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-TENKADICAVDGALAFLVGTLTYRSQ 344 (458)
T ss_dssp HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence 99999975 46788899999999999997 45678899999999999998733 35677777 78999999999987654
Q ss_pred ----hHHHHHHHHHHHhhc---CCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHh
Q 008827 392 ----SVQEQALALVRNLVD---GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL 464 (552)
Q Consensus 392 ----~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~ 464 (552)
++++.++++|+|++. ++++..+.+.+.+ .++.|+.+|.+ ++.++++.|+|+|.|++.++++.+..+++
T Consensus 345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G--~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-- 419 (458)
T 3nmz_A 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWD-- 419 (458)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc--cHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHH--
Confidence 499999999999996 6777777777777 79999999988 88899999999999999888888888886
Q ss_pred hHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 465 LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 465 ~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.|+++.|+.+|++++..+++.|+|+|.||+.
T Consensus 420 -----~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 420 -----MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp -----HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999996
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.4e-35 Score=300.68 Aligned_cols=363 Identities=15% Similarity=0.191 Sum_probs=302.1
Q ss_pred HHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827 165 LINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS 243 (552)
Q Consensus 165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~ 243 (552)
.+|.|+++|+ .+++++..|+++|.+++.+++..+..+.+.|++|.|+++|.++ ++.+++.|+++|.+++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4788999998 5578999999999999988887777889999999999999875 488999999999999988789999
Q ss_pred HHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh--------cC--------CCH
Q 008827 244 RCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL--------DD--------TST 306 (552)
Q Consensus 244 ~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL--------~~--------~~~ 306 (552)
.+++.|++|.|+++|+ ++++++++.++++|++++.. +..+.. +.+ |++|+|+++| .+ .++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~-i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEE-LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHH-HHH-HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHH-HHh-ccHHHHHHHHhccccccccCccchhcccccH
Confidence 9999999999999999 88999999999999999988 566655 777 9999999999 32 356
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhh-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhcccCC-------------
Q 008827 307 AVQVAALGAISNIVVDFTTRRSTFIRL-GGVKLLVQLSKS------MDSTIRLNALRALRNLIFLAE------------- 366 (552)
Q Consensus 307 ~v~~~a~~aL~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~------------- 366 (552)
+++..|+|+|.|++.+ +..++.+.+. |+++.|+.++++ .+..++++++++|.|+++..+
T Consensus 158 ~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 7778999999999987 7788888887 999999999985 456788999999999874210
Q ss_pred ------------------------------------hHhHHHHHHhhcHHHHHhhhcC-CChhHHHHHHHHHHHhhcCCc
Q 008827 367 ------------------------------------DKCKEEIFMELTASLLASLICD-PEPSVQEQALALVRNLVDGRI 409 (552)
Q Consensus 367 ------------------------------------~~~~~~i~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 409 (552)
++..+.+++.++++.++.+|.+ .++.+++.|+|+|+|++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~ 316 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC
Confidence 0011223445678888898874 568999999999999998765
Q ss_pred ch---H-HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh
Q 008827 410 NS---V-EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 485 (552)
Q Consensus 410 ~~---~-~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~ 485 (552)
.. + +.++...| .++.|+++|.+ ++++++..++|+|.|++.+. ... .++. .++++.|+++|.++++
T Consensus 317 ~~~~~~~~~~v~~~~-~l~~Lv~LL~~-~~~~v~~~A~~aL~nls~~~-~~~-~~i~-------~~~i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 317 LMSSGMSQLIGLKEK-GLPQIARLLQS-GNSDVVRSGASLLSNMSRHP-LLH-RVMG-------NQVFPEVTRLLTSHTG 385 (457)
T ss_dssp SHHHHHHHHHHTTSC-CHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSG-GGH-HHHH-------HHTHHHHHHTTTSCCS
T ss_pred cchHHHHHHHHHHcC-CchHHHHHHhC-CCHhHHHHHHHHHHHHhcCH-HHH-HHHH-------HhhhHHHHHhccCCCC
Confidence 43 2 34554323 68999999998 89999999999999999854 334 4454 5789999999998754
Q ss_pred ------hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC-CccHHHHHHHHHHHHhhhc
Q 008827 486 ------RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP-CLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 486 ------~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~-~~~v~~~a~~al~~~~~~~ 548 (552)
++...++++|.|+.. +..++...+.+.|++++|++++.++ ++++++.|.+.|.++....
T Consensus 386 ~~~~~~~v~~~~l~~l~ni~~----~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 386 NTSNSEDILSSACYTVRNLMA----SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp CSTTHHHHHHHHHHHHHHHHT----TCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred CCCCcHHHHHHHHHHHHHHHh----cCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 588899999999985 4567889999999999999999988 8899999999999987543
No 24
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.4e-34 Score=297.56 Aligned_cols=362 Identities=13% Similarity=0.133 Sum_probs=300.2
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHH
Q 008827 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL 200 (552)
Q Consensus 122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 200 (552)
.++.++.+++++++.+|..|+.+|.+++..++. .+..++..|++|.|+++|+. ++.++..|+++|.+|+.++++++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 578999999999999999999999999865432 34578899999999999984 5678999999999999988999999
Q ss_pred HHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC--------C--------CCHH
Q 008827 201 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA--------H--------DSSD 264 (552)
Q Consensus 201 ~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~--------~--------~~~~ 264 (552)
+++.|++|.|+++|... .++.+++.++++|++++.+ ++.+..+.+ |++|.|+++|. + .+..
T Consensus 82 i~~~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 99999999999999833 3588999999999999987 678888899 99999999993 2 2456
Q ss_pred HHHHHHHHHHHhhcccccccchhhhcc-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCC--------------
Q 008827 265 VRSAACMCLRSVSRSIKNLSAGSFMNE-TIVIPLVRLLDD------TSTAVQVAALGAISNIVVDF-------------- 323 (552)
Q Consensus 265 v~~~a~~~L~~ls~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~-------------- 323 (552)
++..|+++|++|+.. +..+.. +.+. |++++|+.+|++ .+..+++.|+++|.|++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQT-MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHH-HTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHccC-HHHHHH-HHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 777999999999987 555555 7776 999999999975 45678899999999986310
Q ss_pred ------------------------------------chhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC
Q 008827 324 ------------------------------------TTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE 366 (552)
Q Consensus 324 ------------------------------------~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~ 366 (552)
+...+.+.+.|+++.|+.++.+ +++.+++.|+|+|.|++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~ 316 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC
Confidence 0111234456789999999875 468999999999999997554
Q ss_pred hH---h-HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccC-----chh
Q 008827 367 DK---C-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS-----KAE 437 (552)
Q Consensus 367 ~~---~-~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~-----~~~ 437 (552)
+. . +..+.+.++++.|+++|.+++.+++..|+|+|+|++.+. ....++..+ +++.|+++|.+.. .++
T Consensus 317 ~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~--~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQ--VFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHH--THHHHHHTTTSCCSCSTTHHH
T ss_pred cchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHh--hhHHHHHhccCCCCCCCCcHH
Confidence 32 2 333446899999999999999999999999999998753 456666666 6899999998731 246
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-ChhHHHHHHHHHHhhcC
Q 008827 438 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 438 v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~a~~~l~~l~~ 500 (552)
+...++++|.|+..+++.+...+.+ .|+++.|+.+++++ +.++++.|+++|.++..
T Consensus 393 v~~~~l~~l~ni~~~~~~~~~~i~~-------~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQPQLAKQYFS-------SSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHCC-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHH-------cCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 8889999999999888777776664 89999999999999 99999999999999985
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.4e-29 Score=248.86 Aligned_cols=272 Identities=19% Similarity=0.180 Sum_probs=234.5
Q ss_pred CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827 262 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-----------TSTAVQVAALGAISNIVVDFTTRRSTF 330 (552)
Q Consensus 262 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~ 330 (552)
+...+..|+++|.+++.+ +..|.. +.+.|++++|+.+|.. .+++++..|+++|.|++.+....+..+
T Consensus 45 ~~~~~~~A~~aL~nls~d-~e~R~~-i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFD-EEHRHA-MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGTHHHHHHHHHHHHTS-HHHHHH-HHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCC-HHHHHH-HHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345666899999999988 556666 8999999999999942 247899999999999998877777666
Q ss_pred Hh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCC
Q 008827 331 IR-LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 331 ~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
.. .|++|.|+++|.++++.+++.|+|+|.|++...++++|..+.+.|+++.|+++ +++.++++++.++++|+|++...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 54 45699999999999999999999999999885456789999999999999997 46788999999999999999866
Q ss_pred cchHHHHH-hhcCchHHHHHHHhcccCch---hHHHHHHHHHHhhcC---CChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827 409 INSVEYIF-AEDGIILDAVGRQLRIASKA---EIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQ 481 (552)
Q Consensus 409 ~~~~~~i~-~~~~~~~~~l~~~L~~~~~~---~v~~~a~~~L~~la~---~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~ 481 (552)
++....+. ..| .++.|+++|.+..+. ++++.++++|.|++. +++..++.+.+ .|+++.|+.+|+
T Consensus 203 ~~nk~~i~~~~G--ai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-------~g~i~~Lv~lL~ 273 (354)
T 3nmw_A 203 TENKADICAVDG--ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-------NNCLQTLLQHLK 273 (354)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-------TTHHHHHHHHTT
T ss_pred hhhhHHHHHhcC--cHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-------cCCHHHHHHHHc
Confidence 55555555 445 799999999873222 599999999999996 67777887775 899999999999
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827 482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~ 548 (552)
+++..++++|+|+|.|++. ++.++++.+.+.|++++|+++++++++.+++.|.+||.++....
T Consensus 274 ~~~~~v~~~A~~aL~nLa~----~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 274 SHSLTIVSNACGTLWNLSA----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp CSCHHHHHHHHHHHHHHTS----SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHHhC----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999995 57888999999999999999999999999999999999998764
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.3e-29 Score=247.27 Aligned_cols=266 Identities=18% Similarity=0.168 Sum_probs=231.9
Q ss_pred hhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC-----------CCHHHHHHHHHHHHHhhcccccccchhhh-
Q 008827 222 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-----------DSSDVRSAACMCLRSVSRSIKNLSAGSFM- 289 (552)
Q Consensus 222 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~-----------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~- 289 (552)
..+..|+++|++++.+ +++|+.+++.|+++.|+.+|.. .++.++..|+++|.+|+...+..+.. +.
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~-i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-LCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence 4567899999999975 7899999999999999999952 24789999999999999875544444 43
Q ss_pred ccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCCh
Q 008827 290 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAED 367 (552)
Q Consensus 290 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~ 367 (552)
..|++|+|+++|+++++++++.|+++|.||+.+ .+.+|..+.+.|+++.|+++ ++++++.+++.++++|.|++... +
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-T 203 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-H
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-h
Confidence 456799999999999999999999999999975 46778899999999999997 56778999999999999998733 4
Q ss_pred HhHHHHH-HhhcHHHHHhhhcCCCh----hHHHHHHHHHHHhhc---CCcchHHHHHhhcCchHHHHHHHhcccCchhHH
Q 008827 368 KCKEEIF-MELTASLLASLICDPEP----SVQEQALALVRNLVD---GRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 439 (552)
Q Consensus 368 ~~~~~i~-~~~~~~~l~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~ 439 (552)
+.+..+. ..|+++.|++++.++++ ++++.++++|+|++. ++++..+.+.+.+ .++.|+++|.+ ++.+++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g--~i~~Lv~lL~~-~~~~v~ 280 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKS-HSLTIV 280 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT--HHHHHHHHTTC-SCHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC--CHHHHHHHHcC-CChHHH
Confidence 5677777 78999999999987654 599999999999996 6677777777777 79999999998 889999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 440 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 440 ~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
+.|+|+|.|++.+++..++.+++ .|+++.|+++|++++..+++.|+|+|.||+.
T Consensus 281 ~~A~~aL~nLa~~~~~~~~~i~~-------~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 281 SNACGTLWNLSARNPKDQEALWD-------MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHH-------TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999999888888888876 8999999999999999999999999999996
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=242.75 Aligned_cols=488 Identities=12% Similarity=0.113 Sum_probs=338.3
Q ss_pred HHHHHHHHHcCCCCCC--ccc-ccccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 008827 14 GARSLKMIYQSKMAPK--YDF-LQEENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS 89 (552)
Q Consensus 14 ~l~~l~~l~~~~~~~~--~~~-~~~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~ 89 (552)
++.++..+ +|..|. ..+ ..++..+.+.+.+.+ .+..+...+...+...|.....|..+. .++++.|.+++++
T Consensus 232 ~~~~l~~l--fPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~-~~~~~~L~~~l~~- 307 (778)
T 3opb_A 232 IVKTLSEL--YPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYIT-ENYLQLLERSLNV- 307 (778)
T ss_dssp HHHHHHHH--TTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHH-HHHHHHHHHHTTS-
T ss_pred HHHHHHHH--hcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHH-HhHHHHHHHHhcc-
Confidence 34444444 444441 133 377888999988864 445677888999999999888888884 5667999999976
Q ss_pred HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH-HhHHHH
Q 008827 90 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINN 168 (552)
Q Consensus 90 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~g~i~~ 168 (552)
..+|..|+..|..+...+......+ ......+.+.+.+++...|..|+..|..++.... .++.++. .|+++.
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si-----~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~--VKe~L~~d~~~L~~ 380 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINL-----KQLSEIFINAISRRIVPKVEMSVEALAYLSLKAS--VKIMIRSNESFTEI 380 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCH-----HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH--HHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcH-----HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH--HHHHHHhCHHHHHH
Confidence 5788899999999876543211111 2334555667777777779999999999987543 3444544 678999
Q ss_pred HHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q 008827 169 LLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL 246 (552)
Q Consensus 169 Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 246 (552)
|+++++. +..+...++.+|.|+..+.+... .+...+..|-++..... |....... .+..-....+..+..+.
T Consensus 381 Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~---~e~~~l~~Lk~~A~~~~--p~~~~~d~-~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 381 LLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX---XXXXXXXXXXXXXXXXX--PAADKVGA-EKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC---CCCC--------------------CCT-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCCcccc---hhhhhhhhhhhhccccC--cccCcccc-cccchHHHHHHHHHHHH
Confidence 9999983 56788999999999998655321 01224444444333221 11100000 01110111122456778
Q ss_pred hcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHH---HHHHHHHHHHHhhcCC
Q 008827 247 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA---VQVAALGAISNIVVDF 323 (552)
Q Consensus 247 ~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~---v~~~a~~aL~nl~~~~ 323 (552)
+.|++|.|+.+++++++.+|..++++|.+++.. ...+.. +++.|++++|+.+|.+.... .+..|+.+|.++....
T Consensus 455 eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~-lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHH-HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH-HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999987 555655 88999999999999876443 8999999999998544
Q ss_pred chhHHHHH---hhCcHHHHHHhhcC-CCH-------------HHHHHHHHHHHHhcccCCh---HhHHHHHHh-hcHHHH
Q 008827 324 TTRRSTFI---RLGGVKLLVQLSKS-MDS-------------TIRLNALRALRNLIFLAED---KCKEEIFME-LTASLL 382 (552)
Q Consensus 324 ~~~~~~~~---~~g~i~~L~~ll~~-~~~-------------~v~~~a~~aL~~l~~~~~~---~~~~~i~~~-~~~~~l 382 (552)
.+.. .+- ..|++++|+++|.. +.. .-+.+|+.||.|++...++ +.+..++++ ++++.|
T Consensus 533 np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 533 NPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp CHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred CHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 3321 111 13899999999983 211 2377999999999986533 457888884 999999
Q ss_pred HhhhcCCChhHHHHHHHHHHHhhcCCcchH-HHHHhhcCc----hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhH
Q 008827 383 ASLICDPEPSVQEQALALVRNLVDGRINSV-EYIFAEDGI----ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK 457 (552)
Q Consensus 383 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~~----~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~ 457 (552)
..++.+++..+|..|++++.|++.+ ++.+ +.++..++. -++.|+.++.+ .+.+++..|+|+|+|++++++...
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia 689 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIA 689 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHH
Confidence 9999999999999999999999974 3332 233322211 27789898877 899999999999999987777667
Q ss_pred HHHHHHhhHhhhhhhHHHHHHhhcC--CChhHHHHHHHHHHhhcC-CCCCCCHHHHHHHH-HCCcHHHHHhhhcCC
Q 008827 458 EAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLTC-SSSPGSSGRLVKLH-DAGIVSHVKNMVNDP 529 (552)
Q Consensus 458 ~~i~~~~~~~~~~~~v~~Lv~lL~~--~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~l~-~~g~~~~L~~ll~~~ 529 (552)
+.+++ ..++++.++.++++ ++.+++..++.++.|++. ..+++..+....+. ....+..|.++++++
T Consensus 690 ~~ll~------~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 690 KELLT------KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHTT------CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HHHHH------ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 77776 25788999999999 899999999999999994 21223222333444 334556777777644
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=7e-26 Score=214.31 Aligned_cols=243 Identities=24% Similarity=0.335 Sum_probs=223.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827 292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 371 (552)
Q Consensus 292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 371 (552)
|.+|.|+++|++++++++..|+++|.+++...+..+..+.+.|+++.|+++++++++.++..++++|.+++.. +++.+.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHH
Confidence 5789999999999999999999999999988877888999999999999999999999999999999999873 467899
Q ss_pred HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827 372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 451 (552)
Q Consensus 372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~ 451 (552)
.+.+.++++.+++++.++++.++..++++|++++...++....+++.+ .++.+.++|.+ +++.++..++++|+|++.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG--GVEVLVKLLTS-TDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999988777777888877 79999999988 889999999999999999
Q ss_pred CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCc
Q 008827 452 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL 531 (552)
Q Consensus 452 ~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~ 531 (552)
+++..++.+++ .|+++.|+.+++++++.++..|+++|.+++. +..+..+.+.+.|+++.|.++++++++
T Consensus 158 ~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l~~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 158 GPDEAIKAIVD-------AGGVEVLVKLLTSTDSEVQKEAARALANIAS----GPTSAIKAIVDAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp SCHHHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT----SBHHHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred CCHHHHHHHHH-------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHCCCcH
Confidence 88776677775 8999999999999999999999999999995 577888999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhcC
Q 008827 532 DVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 532 ~v~~~a~~al~~~~~~~~ 549 (552)
++++.|.++|.++.....
T Consensus 227 ~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999987653
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=5.5e-26 Score=215.03 Aligned_cols=241 Identities=24% Similarity=0.314 Sum_probs=220.9
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 328 (552)
Q Consensus 249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 328 (552)
|.+|.++++|++++++++..|+++|.+++...+..+.. +.+.|+++.|+++|++++++++..|+++|++++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999999999999999999998875545555 78899999999999999999999999999999988788888
Q ss_pred HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
.+.+.|+++.++.+++++++.++..++++|.+++. .+++.+..+.+.++++.+++++.++++.++..++++|+|++.+.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999986 34678889999999999999999999999999999999999987
Q ss_pred cchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHH
Q 008827 409 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 488 (552)
Q Consensus 409 ~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~ 488 (552)
++....+.+.+ +++.+.++|.+ +++.++..++++|++++.+++..++.+.+ .|+++.|+++++++++.++
T Consensus 160 ~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-------~~~i~~L~~ll~~~~~~v~ 229 (252)
T 4hxt_A 160 DEAIKAIVDAG--GVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAIKAIVD-------AGGVEVLQKLLTSTDSEVQ 229 (252)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHHHHHHH-------TTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHCc--CHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-------CCCHHHHHHHHCCCcHHHH
Confidence 77777788777 89999999997 88999999999999999987777777775 8999999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 008827 489 TAAVWAVLNLTCS 501 (552)
Q Consensus 489 ~~a~~~l~~l~~~ 501 (552)
..|+++|.|++..
T Consensus 230 ~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 230 KEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999963
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1.5e-25 Score=212.15 Aligned_cols=242 Identities=21% Similarity=0.328 Sum_probs=218.4
Q ss_pred ccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh
Q 008827 290 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 369 (552)
Q Consensus 290 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 369 (552)
.....+.++..|++++++++..|+++|.++.......+..+.+.|+++.|+++++++++.++..++++|.+++.+ +++.
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~ 88 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQ 88 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHH
Confidence 345689999999999999999999999887765666777899999999999999999999999999999999874 4678
Q ss_pred HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhh
Q 008827 370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNV 449 (552)
Q Consensus 370 ~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~l 449 (552)
+..+.+.|+++.++++++++++.++..++++|+|++.+.+.....+.+.+ +++.++++|.+ +++.++..++++|+|+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~-~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC--CHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765557777777 79999999988 8899999999999999
Q ss_pred cCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827 450 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP 529 (552)
Q Consensus 450 a~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 529 (552)
+.+++.....+++ .|+++.|+.+|+++++.++..|+++|.+++. +..+....+.+.|+++.|.++++++
T Consensus 166 ~~~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 166 ASGGNEQIQAVID-------AGALPALVQLLSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp TTSCHHHHHHHHH-------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT----SCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HcCChHHHHHHHH-------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc----CCHHHHHHHHHCCcHHHHHHHhCCC
Confidence 9988777777765 7999999999999999999999999999995 5677888999999999999999999
Q ss_pred CccHHHHHHHHHHHHhh
Q 008827 530 CLDVKLRVKTALEQFNS 546 (552)
Q Consensus 530 ~~~v~~~a~~al~~~~~ 546 (552)
++++++.|.++|.++..
T Consensus 235 ~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 235 NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SSHHHHTHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998864
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1.4e-25 Score=212.44 Aligned_cols=239 Identities=21% Similarity=0.250 Sum_probs=214.5
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 328 (552)
Q Consensus 249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 328 (552)
..++.+...|++++++++..|+++|+++.......+.. +.+.|++|.|+++|++++++++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 36899999999999999999999997764433344444 78899999999999999999999999999999988888888
Q ss_pred HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhH-HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
.+.+.|+++.|++++.++++.++..++++|+|++... ..+ ..+.+.++++.|++++.++++.++..++++|++++.+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998743 345 7888999999999999999999999999999999998
Q ss_pred CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhH
Q 008827 408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487 (552)
Q Consensus 408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~ 487 (552)
.++....+++.+ +++.|.++|.+ +++.++..++++|+|++.+++..+..+++ .|+++.|+.+++++++.+
T Consensus 169 ~~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~v 238 (252)
T 4db8_A 169 GNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKE-------AGALEKLEQLQSHENEKI 238 (252)
T ss_dssp CHHHHHHHHHTT--CHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTHHHHHHTTTTCSSSHH
T ss_pred ChHHHHHHHHCC--CHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHH-------CCcHHHHHHHhCCCCHHH
Confidence 877777777777 79999999988 79999999999999999888877777776 799999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 008827 488 RTAAVWAVLNLTC 500 (552)
Q Consensus 488 ~~~a~~~l~~l~~ 500 (552)
+..|+++|.|++.
T Consensus 239 ~~~A~~~L~~l~~ 251 (252)
T 4db8_A 239 QKEAQEALEKLQS 251 (252)
T ss_dssp HHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999983
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-23 Score=218.59 Aligned_cols=430 Identities=11% Similarity=0.071 Sum_probs=313.8
Q ss_pred HHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHh
Q 008827 94 DASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL 172 (552)
Q Consensus 94 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~l 172 (552)
..++.++..+----++.+..+.- ..+..+.+.+.+++ .+..+....+.+|...+.... ....+..++++.|.++
T Consensus 230 ~~~~~~l~~lfPi~p~~~s~lfl--~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~---cR~~I~~~~~~~L~~~ 304 (778)
T 3opb_A 230 SIIVKTLSELYPSLTTLCSEIFL--TKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET---MRTYITENYLQLLERS 304 (778)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHS--TTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHc--cccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcH---HHHHHHHhHHHHHHHH
Confidence 34555555543333444444432 35566767777754 444555555555555444322 2345577889999999
Q ss_pred cCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhc-ccH
Q 008827 173 LDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL-QVL 251 (552)
Q Consensus 173 l~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~-~~l 251 (552)
++. ..++..|+-+|.++..........+ ....+.+.++|.++. .+-++.|+..|++++. +++.|..+.+. |.+
T Consensus 305 l~~-~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~--~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L 378 (778)
T 3opb_A 305 LNV-EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRI--VPKVEMSVEALAYLSL-KASVKIMIRSNESFT 378 (778)
T ss_dssp TTS-GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHH
T ss_pred hcc-HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHH
Confidence 975 5788899999999876432210001 123456667776653 4458999999999986 56778777754 669
Q ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHhhcccccc-------------------------------------cchhhhccCc
Q 008827 252 KLVVDALAH-DSSDVRSAACMCLRSVSRSIKNL-------------------------------------SAGSFMNETI 293 (552)
Q Consensus 252 ~~lv~~L~~-~~~~v~~~a~~~L~~ls~~~~~~-------------------------------------~~~~~~~~~~ 293 (552)
+.|+++++. ++..+.+.++.+|.|++...+.. +...+.+.|+
T Consensus 379 ~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv 458 (778)
T 3opb_A 379 EILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL 458 (778)
T ss_dssp HHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence 999999995 78889999999999998754321 1122578999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHH---HHHHHHHHHHHhcccCChHhH
Q 008827 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST---IRLNALRALRNLIFLAEDKCK 370 (552)
Q Consensus 294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~---v~~~a~~aL~~l~~~~~~~~~ 370 (552)
+|.|+.++.++++.+++.|+++|.|++.+ ..+|..+++.|+++.|+.++.+.... .|.+|+.+|.+++...+|..
T Consensus 459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~- 536 (778)
T 3opb_A 459 ISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL- 536 (778)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-
Confidence 99999999999999999999999999965 77898999999999999999987554 89999999999987666543
Q ss_pred HHHHH----hhcHHHHHhhhcC-CCh-------------hHHHHHHHHHHHhhcCCc----chHHHHHhh-cCchHHHHH
Q 008827 371 EEIFM----ELTASLLASLICD-PEP-------------SVQEQALALVRNLVDGRI----NSVEYIFAE-DGIILDAVG 427 (552)
Q Consensus 371 ~~i~~----~~~~~~l~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~----~~~~~i~~~-~~~~~~~l~ 427 (552)
++. .++++.|+++|.. ++. -.+..|+.+|.|++.... +....++++ + +++.+.
T Consensus 537 --~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g--a~~~L~ 612 (778)
T 3opb_A 537 --IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV--YWSTIE 612 (778)
T ss_dssp --HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH--HHHHHH
T ss_pred --HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC--HHHHHH
Confidence 121 3789999999983 221 126789999999998752 234667875 6 799999
Q ss_pred HHhcccCchhHHHHHHHHHHhhcCCChhhH-HHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCC
Q 008827 428 RQLRIASKAEIEIQGMYVLGNVATGKESHK-EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGS 506 (552)
Q Consensus 428 ~~L~~~~~~~v~~~a~~~L~~la~~~~~~~-~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~ 506 (552)
.+|.+ .+..++..|+++++|++...+ .+ +.++..--+ ...+-++.|+.++.++|..+|.+|+|+|.|++. +.
T Consensus 613 ~LL~s-~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~-~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts----~~ 685 (778)
T 3opb_A 613 NLMLD-ENVPLQRSTLELISNMMSHPL-TIAAKFFNLENP-QSLRNFNILVKLLQLSDVESQRAVAAIFANIAT----TI 685 (778)
T ss_dssp HGGGC-SSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSH-HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH----HC
T ss_pred HHHhC-CCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCc-hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CC
Confidence 99988 788999999999999997443 32 223210000 012236899999999999999999999999974 34
Q ss_pred HHHHHHHHHC-CcHHHHHhhhcC--CCccHHHHHHHHHHHHhhh
Q 008827 507 SGRLVKLHDA-GIVSHVKNMVND--PCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 507 ~~~~~~l~~~-g~~~~L~~ll~~--~~~~v~~~a~~al~~~~~~ 547 (552)
....+.+.+. ++++.++.++++ ++++++.++..++.++.++
T Consensus 686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 5566777777 799999999987 7899999999999999974
No 33
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.92 E-value=9.2e-23 Score=217.52 Aligned_cols=456 Identities=14% Similarity=0.146 Sum_probs=320.6
Q ss_pred hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827 38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG 116 (552)
Q Consensus 38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~ 116 (552)
++.+..+..+++..++..++.++..++..-... .....++.+..++++ ++.+|..++.+|+.++...+.. ..
T Consensus 128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~-- 200 (588)
T 1b3u_A 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NV-- 200 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HH--
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hH--
Confidence 344444444444444444444444443221110 112345666666665 6789999999999987653221 11
Q ss_pred ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCC-
Q 008827 117 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK- 194 (552)
Q Consensus 117 ~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~- 194 (552)
....++.+..+++++++.+|..|+.+|..++...+. ......++|.+.++++++ ..+|..++.+|..++...
T Consensus 201 --~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~ 274 (588)
T 1b3u_A 201 --KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG 274 (588)
T ss_dssp --HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC
Confidence 134667788888999999999999999998875432 233456788888888754 568999999998887521
Q ss_pred HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh-hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHH
Q 008827 195 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 273 (552)
Q Consensus 195 ~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L 273 (552)
++ .+....++.+++++.++ ++.+|..++.+|+.++..-. ..+....-..++|.+..+++++++.+|..++++|
T Consensus 275 ~~----~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l 348 (588)
T 1b3u_A 275 PE----ITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI 348 (588)
T ss_dssp HH----HHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTG
T ss_pred cc----cchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11 12345678888888765 48899999999999886422 2121122346789999999999999999999999
Q ss_pred HHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827 274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353 (552)
Q Consensus 274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 353 (552)
..++...+. . .....++|.+..+++++++++|..++.++..+....+.. ......+|.+..++.+++..+|..
T Consensus 349 ~~l~~~~~~---~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~ 421 (588)
T 1b3u_A 349 MGLSPILGK---D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLA 421 (588)
T ss_dssp GGGHHHHCH---H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhhH---h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHH
Confidence 998764321 1 223457888999999999999999999999887643321 123467888999999999999999
Q ss_pred HHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc
Q 008827 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA 433 (552)
Q Consensus 354 a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~ 433 (552)
++.++..++...+++ ......++.+..++.++++.+++.++.+++.++..... ...+. . +++.+..++.+
T Consensus 422 ~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~-~--llp~l~~~~~~- 491 (588)
T 1b3u_A 422 IIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHA-T--IIPKVLAMSGD- 491 (588)
T ss_dssp HHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHH-H--THHHHHHTTTC-
T ss_pred HHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHH-H--HHHHHHHHhhC-
Confidence 999999987532221 11234578888999999999999999999999754221 11222 1 67777776665
Q ss_pred CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 008827 434 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL 513 (552)
Q Consensus 434 ~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l 513 (552)
+++.++..++++++.++.... ...+. ..+++.|..+++++++.+|..++++++.+... -|. .+
T Consensus 492 ~~~~~R~~a~~~l~~l~~~~~--~~~~~--------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~--~~~-----~~ 554 (588)
T 1b3u_A 492 PNYLHRMTTLFCINVLSEVCG--QDITT--------KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI--LDN-----ST 554 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH--HHHHH--------HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG--SCH-----HH
T ss_pred CCHHHHHHHHHHHHHHHHhcC--HHHHH--------HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH--hch-----hh
Confidence 888999999999999875221 11122 46778999999999999999999999999852 121 12
Q ss_pred HHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 514 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 514 ~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
....+++.|.++++|++++||+.|..|+..+.+
T Consensus 555 ~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 555 LQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 223457788888899999999999999988754
No 34
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.92 E-value=1.7e-22 Score=215.54 Aligned_cols=460 Identities=13% Similarity=0.075 Sum_probs=316.0
Q ss_pred chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhc
Q 008827 37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 115 (552)
Q Consensus 37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~ 115 (552)
.++.+..++.++++.++..++..|.+++...... ......++.+..+..+ ++.+|..+..+++.++..-+...
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~---- 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---- 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH----
Confidence 3444444444455555555555555554332211 0112233444444443 34555555555555543321110
Q ss_pred cccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCC
Q 008827 116 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK 194 (552)
Q Consensus 116 ~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~ 194 (552)
....++.+..+++|+++.||..|+.+|..++...+. .......+|.+..++++ ++.+|..|+.+|..++...
T Consensus 162 ---~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 162 ---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp ---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence 023456666788999999999999999999875432 23346789999999984 4678999999999887543
Q ss_pred HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHH
Q 008827 195 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 274 (552)
Q Consensus 195 ~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~ 274 (552)
+.. ......+|.+.+++.+. ++.+|..++.+|+.++..-. .......++|.+..+++++++.+|..++.++.
T Consensus 235 ~~~---~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 235 PQE---DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 306 (588)
T ss_dssp CHH---HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 221 12234567777776654 48899999999999875211 11233467999999999999999999999999
Q ss_pred HhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHH
Q 008827 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNA 354 (552)
Q Consensus 275 ~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a 354 (552)
.++...+...........++|.+..+++++++.+|..++++|+.++...+. .......++.+..+++++++.+|..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 998753321100012356788899999999999999999999998753322 12234578899999999999999999
Q ss_pred HHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccC
Q 008827 355 LRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS 434 (552)
Q Consensus 355 ~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~ 434 (552)
+.++..+....+++ ......++.+.+++.++++.++..++.++..++..-... .+... +++.+.+.|.+ +
T Consensus 384 ~~~l~~l~~~~~~~----~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~--l~~~l~~~l~d-~ 453 (588)
T 1b3u_A 384 ISNLDCVNEVIGIR----QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEK--LNSLCMAWLVD-H 453 (588)
T ss_dssp HTTCHHHHHHSCHH----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHH--HHHHHHHGGGC-S
T ss_pred HHHHHHHHHhcCHH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHH--HHHHHHHHhcC-C
Confidence 99999887644332 123456788888999999999999999999887431110 01111 67888888877 7
Q ss_pred chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 008827 435 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 514 (552)
Q Consensus 435 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~ 514 (552)
++.|+..++.+++.++..... .... ..++|.|..++++++..+|..++++++.++. .- .....
T Consensus 454 ~~~Vr~~a~~~l~~l~~~~~~--~~~~--------~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~-----~~--~~~~~ 516 (588)
T 1b3u_A 454 VYAIREAATSNLKKLVEKFGK--EWAH--------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSE-----VC--GQDIT 516 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCH--HHHH--------HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH-----HH--HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCc--hhHH--------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-----hc--CHHHH
Confidence 889999999999998863221 1122 4667888899999999999999999999984 11 11122
Q ss_pred HCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 515 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 515 ~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
...+++.|.++++|++++||..+.++|..+...
T Consensus 517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999988753
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1.6e-22 Score=185.67 Aligned_cols=202 Identities=20% Similarity=0.256 Sum_probs=182.9
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh
Q 008827 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 367 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 367 (552)
....++.+.|+.+|++++++++..|+++|.+++.+.+..+..+.+.|+++.|+++++++++.++..|+++|+|++.+ ++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~ 86 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GN 86 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-Cc
Confidence 34578899999999999999999999999999988888888999999999999999999999999999999999863 46
Q ss_pred HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827 368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG 447 (552)
Q Consensus 368 ~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~ 447 (552)
+.+..+.+.++++.+++++.++++.++..++++|+|++.++++....+++.+ .++.|+++|.+ ++++++..++++|.
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALS 163 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC--cHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999998887778888777 89999999998 78999999999999
Q ss_pred hhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 448 NVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 448 ~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
|++.+++..+..+.+ .|+++.|+.+++++++.++..|+++|.+++.
T Consensus 164 ~l~~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKE-------AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHH-------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999987777777765 7999999999999999999999999999983
No 36
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.91 E-value=1.7e-22 Score=224.72 Aligned_cols=514 Identities=13% Similarity=0.124 Sum_probs=335.0
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCC-cccc---cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPK-YDFL---QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 79 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~-~~~~---~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i 79 (552)
.+++....+.++.+|..++....... .+.+ -...++.++.+++++++.+|..|+.++..+.........-.-.+.+
T Consensus 138 ~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l 217 (852)
T 4fdd_A 138 DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFI 217 (852)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34567788889999988865421110 0010 1346788888888888999999999999876543221110112467
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827 80 KRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQD 158 (552)
Q Consensus 80 ~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~ 158 (552)
+.+..++.+ ++.+|..++.+|..++...+....... .+.++.++..+++.++.+|..|..++..++........-
T Consensus 218 ~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l----~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 218 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM----HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH----HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 778887776 679999999999999987655432221 345667778889999999999999999987643211100
Q ss_pred hhhHHhHHHHHHHhc-----------CC------------CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhh
Q 008827 159 VGIKTKLINNLLELL-----------DD------------PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ 215 (552)
Q Consensus 159 ~~~~~g~i~~Lv~ll-----------~~------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~ 215 (552)
.-.....+|.+++.+ .+ ...++..|+.+|..++...+. .+. ...++.+.+.+.
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~~l~~~l~ 369 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILPLLKELLF 369 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhc
Confidence 112346788888887 22 113577788888888743221 011 123566666666
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHH
Q 008827 216 KGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI 295 (552)
Q Consensus 216 ~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~ 295 (552)
++ ++.+|+.+++++++++....+.-. -.-.+++|.++..++++++.||..+++++++++......... -...++++
T Consensus 370 ~~--~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~~~~ll~ 445 (852)
T 4fdd_A 370 HH--EWVVKESGILVLGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-TYLKPLMT 445 (852)
T ss_dssp CS--SHHHHHHHHHHHHHTTTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT-TTHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHH
Confidence 54 589999999999999875433111 122468999999999999999999999999998753221111 23457889
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc-----------
Q 008827 296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL----------- 364 (552)
Q Consensus 296 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~----------- 364 (552)
.|+..+.++++.++..|+++|.+++...+....... .+.++.|+..++..+......++.+++.++..
T Consensus 446 ~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~ 524 (852)
T 4fdd_A 446 ELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence 999999999999999999999999864332111111 34555666666554444433333444433210
Q ss_pred ----------------CChHhHHHHHH----------h-------hcHHHHHhhhc-----------------CCChhHH
Q 008827 365 ----------------AEDKCKEEIFM----------E-------LTASLLASLIC-----------------DPEPSVQ 394 (552)
Q Consensus 365 ----------------~~~~~~~~i~~----------~-------~~~~~l~~ll~-----------------~~~~~v~ 394 (552)
.+++.+ .+++ . ..++.++.++. .++.+++
T Consensus 525 ~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~ 603 (852)
T 4fdd_A 525 QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM 603 (852)
T ss_dssp HHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred HHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHH
Confidence 011110 0000 0 01222222221 2356788
Q ss_pred HHHHHHHHHhhcCCcchHHHHH-hhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhH
Q 008827 395 EQALALVRNLVDGRINSVEYIF-AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473 (552)
Q Consensus 395 ~~a~~~L~~l~~~~~~~~~~i~-~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v 473 (552)
..++++++.++..-.......+ ... +++.+...+++ +++.++..+.++++.++..........+ ..++
T Consensus 604 ~~~l~~l~~l~~~l~~~~~~~~~~~~--~~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~l--------~~~l 672 (852)
T 4fdd_A 604 IVALDLLSGLAEGLGGNIEQLVARSN--ILTLMYQCMQD-KMPEVRQSSFALLGDLTKACFQHVKPCI--------ADFM 672 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHTCC--HHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCGGGTGGGH--------HHHH
T ss_pred HHHHHHHHHHHHHHhHhHHHHhcCCc--HHHHHHHHhCC-CChhHHHHHHHHHHHHHHHhhHHHHHHH--------HHHH
Confidence 8888888888765434444444 333 78888888877 7899999999999999875544444444 3577
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCC--ccHHHHHHHHHHHHhhh
Q 008827 474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQFNSF 547 (552)
Q Consensus 474 ~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~al~~~~~~ 547 (552)
|.+.+.|..+++.+|..|+|+++.++... + +...... ..+++.|.+++++++ ..+++.+..+++++...
T Consensus 673 p~l~~~l~~~~~~v~~~a~~alg~i~~~~--~--~~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 673 PILGTNLNPEFISVCNNATWAIGEISIQM--G--IEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHHHH--G--GGGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHh--h--HhHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh
Confidence 88999998888999999999999997411 1 1111221 356889999887653 36899999999998764
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=2e-22 Score=184.96 Aligned_cols=200 Identities=19% Similarity=0.195 Sum_probs=181.4
Q ss_pred HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc
Q 008827 203 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 282 (552)
Q Consensus 203 ~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~ 282 (552)
..+..+.|..+|.++ ++.++..|+++|++++..+++.+..+.+.|++|.++++|+++++.++..|+++|++++...+.
T Consensus 10 ~~~~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 356788999988876 488999999999999988888999999999999999999999999999999999999976555
Q ss_pred ccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 283 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 283 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
.+.. +.+.|++|.|+.+|+++++.++..|+++|+|++.+.+..++.+.+.|+++.|++++.++++.++..++++|.|++
T Consensus 88 ~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHH-HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5555 788999999999999999999999999999999888888888899999999999999999999999999999998
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 406 (552)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (552)
.. +++.+..+.+.|+++.|++++.++++++++.|+++|++++.
T Consensus 167 ~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 74 46788889999999999999999999999999999999874
No 38
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.89 E-value=1.1e-21 Score=218.31 Aligned_cols=513 Identities=12% Similarity=0.063 Sum_probs=332.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHh-------
Q 008827 3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD------- 75 (552)
Q Consensus 3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~------- 75 (552)
|..++..+...+..++..+.... .+ ..+ ++.++.++..++++++.+++.+..+|..+|+..... +..
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~~-~~w--p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~--~~~~~~~~~~ 172 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-EL-QNW--PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI--LDSDVLDRPL 172 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-TT-TTC--TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH--HHHCSSSSCH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-Cc-ccc--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH--hchhhhcchH
Confidence 34566777888888888887653 22 233 578899999999988899999999999988543321 111
Q ss_pred cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827 76 AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154 (552)
Q Consensus 76 ~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~ 154 (552)
.+.++.++.++++ +..+|..|+.+|..+....+...... -...++.++.++.++++.+|..|+.+|..++...+.
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~----~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH----IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS----HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 2356777777776 67999999999998775543221111 135677888889999999999999999999986543
Q ss_pred cchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHH--HHhCcHHHHHHhhh----------cC---C
Q 008827 155 YLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLA--FEVNGVDKLYNHLQ----------KG---S 218 (552)
Q Consensus 155 ~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~i~~L~~~L~----------~~---~ 218 (552)
.... . -.++++.+++++++ ++.++..|+..+..++.... .++.+ +-...+|.+++.+. .. +
T Consensus 249 ~~~~-~-l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 249 RLLP-H-MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp HHGG-G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred HHHH-H-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 2221 1 24688888888884 45789999999998876432 11211 01133566666552 11 0
Q ss_pred -------CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhcc
Q 008827 219 -------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE 291 (552)
Q Consensus 219 -------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~ 291 (552)
....+|..+..+|..++...++ .+ -..++|.+.+.++++++.+|.+|+.+++.++......-.. .-.
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~--~l~ 399 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRD---EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP--YLP 399 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGG---GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG--GHH
T ss_pred cccccccccchHHHHHHHHHHHHHHhccH---HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH--HHH
Confidence 1235688899999988753221 11 1247888888999999999999999999998764431111 335
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827 292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 371 (552)
Q Consensus 292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 371 (552)
+++|.++..++++++.+|..|++++++++...........-.+.++.+++.+.++++.+|.+|++++.+++...++....
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~ 479 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 479 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh
Confidence 78899999999999999999999999988532211001112367888999999999999999999999998643322111
Q ss_pred HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc----------------------------CCcch------HHHHHh
Q 008827 372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVD----------------------------GRINS------VEYIFA 417 (552)
Q Consensus 372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~----------------------------~~~~~------~~~i~~ 417 (552)
. + ...++.+..+++..+......+..+++.++. .+++. ...+..
T Consensus 480 ~-l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~ 557 (852)
T 4fdd_A 480 Y-L-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557 (852)
T ss_dssp G-H-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHH
T ss_pred H-H-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1 1 2234444444444333333333333333321 01100 000000
Q ss_pred hcC--------chHHHHHHHhcc----------------cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhH
Q 008827 418 EDG--------IILDAVGRQLRI----------------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473 (552)
Q Consensus 418 ~~~--------~~~~~l~~~L~~----------------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v 473 (552)
..| .+++.+...+.. .++.+++..++.+++.++.+...+....+. +.+++
T Consensus 558 ~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~------~~~~~ 631 (852)
T 4fdd_A 558 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA------RSNIL 631 (852)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHH------TCCHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhc------CCcHH
Confidence 000 022322233221 124567788888888887643333444442 15778
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 474 ~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
+.+..++.++++.+|..+.++++.++.. ..+........ +++.+.+.+.++...++..|.|+++.+...
T Consensus 632 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~l~~-~lp~l~~~l~~~~~~v~~~a~~alg~i~~~ 700 (852)
T 4fdd_A 632 TLMYQCMQDKMPEVRQSSFALLGDLTKA----CFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQ 700 (852)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHH----CGGGTGGGHHH-HHHHHHHTCCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHH----hhHHHHHHHHH-HHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999841 11112222122 577888888777789999999999988654
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=5.3e-21 Score=182.81 Aligned_cols=186 Identities=23% Similarity=0.286 Sum_probs=168.6
Q ss_pred hhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH-hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh
Q 008827 222 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 300 (552)
Q Consensus 222 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l 300 (552)
+-+..|+..|.+++. +.++...+.+.|++|.++. +|+++++.+|..|+++|++++.+.+..++. +.+.|++|+|+.+
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~-vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ-VLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH-HHHCCCHHHHHHH
Confidence 467788999999986 4567778889999999999 999999999999999999999876655555 8889999999999
Q ss_pred hc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcH
Q 008827 301 LD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 379 (552)
Q Consensus 301 L~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~ 379 (552)
|+ ++++.++..|+|+|+|++.++++..+.+.+.|+++.|+.++++++..++..|+|+|++++.+ +++.+..+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98 46899999999999999998888888899999999999999999999999999999999886 56789999999999
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 380 SLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 380 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
+.|+.+|.++++.+++.++++|+|++.+.+.
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence 9999999999999999999999999988543
No 40
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=5.4e-21 Score=174.68 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=169.7
Q ss_pred HHHHHHHhcC-CCC--chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827 165 LINNLLELLD-DPG--RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 241 (552)
Q Consensus 165 ~i~~Lv~ll~-~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~ 241 (552)
.+|.|+++|. +++ .++..|++++.+++..++..+..+++.|+||.|+++|.++ ++.+++.|+++|.+++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHH
Confidence 5899999998 444 6788999999999998888888999999999999999876 4889999999999999888899
Q ss_pred HHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------------CC
Q 008827 242 RSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------------DT 304 (552)
Q Consensus 242 ~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------------~~ 304 (552)
+..+.+.|++|.|+++|+ .++.++++.++.+|++|+.. +..+.. +.+ +++|+|++++. ..
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~-i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNL-MIT-EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHH-HHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHH-HHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence 999999999999999998 57999999999999999987 444555 555 56999998762 13
Q ss_pred CHHHHHHHHHHHHHhhcCCchhHHHHHhh-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhcccC
Q 008827 305 STAVQVAALGAISNIVVDFTTRRSTFIRL-GGVKLLVQLSKS------MDSTIRLNALRALRNLIFLA 365 (552)
Q Consensus 305 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~ 365 (552)
+++++++|+++|.|++...++.|+.+.+. |+|+.|+.+++. .+...+++++.+|.||++.-
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 77999999999999998777889889876 678999999875 25689999999999998753
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=8.4e-20 Score=174.47 Aligned_cols=225 Identities=14% Similarity=0.178 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827 306 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 384 (552)
Q Consensus 306 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 384 (552)
.+-+..|+..|.+++.+ .++...+.+.|+++.|+. +|.++++.+|..|+|+|++++. .++.++..+++.|+++.|++
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~-~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ-NVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHH
Confidence 46788999999999964 456667889999999999 9999999999999999999987 45679999999999999999
Q ss_pred hhcC-CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHH
Q 008827 385 LICD-PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ 463 (552)
Q Consensus 385 ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~ 463 (552)
+|++ +++.+++.|+|+|+|++.++++..+.+...+ .++.|+.+|.+ +++.++..++|+|++++.+++..++.+++
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g--gi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~- 207 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD--GFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCS- 207 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC--CHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHH-
Confidence 9985 5889999999999999999887777777776 68999999988 89999999999999999988888888886
Q ss_pred hhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC--CcHHHH---Hhhhc-C-CCccHHHH
Q 008827 464 LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA--GIVSHV---KNMVN-D-PCLDVKLR 536 (552)
Q Consensus 464 ~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~--g~~~~L---~~ll~-~-~~~~v~~~ 536 (552)
.|+++.|+.+|.+++..++..|+++|.+++. +........... .....| .+-++ . .+.+..+.
T Consensus 208 ------~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~----~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~ 277 (296)
T 1xqr_A 208 ------MGMVQQLVALVRTEHSPFHEHVLGALCSLVT----DFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEF 277 (296)
T ss_dssp ------TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT----TCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred ------cCCHHHHHHHHcCCChhHHHHHHHHHHHHHh----CChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 8999999999999999999999999999995 223222222211 111222 11222 2 24566777
Q ss_pred HHHHHHHHhh
Q 008827 537 VKTALEQFNS 546 (552)
Q Consensus 537 a~~al~~~~~ 546 (552)
+...+.+++.
T Consensus 278 ~~~il~~~f~ 287 (296)
T 1xqr_A 278 CEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcC
Confidence 7777777763
No 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.85 E-value=2.8e-19 Score=189.82 Aligned_cols=357 Identities=15% Similarity=0.124 Sum_probs=230.5
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT 83 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~ 83 (552)
.+.+......+++-+..++.... +. ..+.+.+++++.+++..++..+...+..+++...... .-++..+.
T Consensus 23 ~~~~~~~k~~~~~kli~~~~~G~----d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~ 92 (591)
T 2vgl_B 23 NNEKKEKRKEAVKKVIAAMTVGK----DV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFV 92 (591)
T ss_dssp TSSCHHHHHHHHHHHHHHHHTTC----CC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHG
T ss_pred cCCCHHHHHHHHHHHHHHHHCCC----Ch--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHH
Confidence 34455555566655555544332 11 2456778889999999999888888888765322111 22456666
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH
Q 008827 84 SLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK 162 (552)
Q Consensus 84 ~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 162 (552)
+-|++ ++.+|..|+.+|+++. .++.. ...++.+.++++|+++.||..|+.++..++...++. +..
T Consensus 93 kdL~~~n~~ir~~AL~~L~~i~--~~~~~--------~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~----~~~ 158 (591)
T 2vgl_B 93 KDCEDPNPLIRALAVRTMGCIR--VDKIT--------EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM----VED 158 (591)
T ss_dssp GGSSSSSHHHHHHHHHHHHTCC--SGGGH--------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC----HHH
T ss_pred HHcCCCCHHHHHHHHHHHHcCC--hHHHH--------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh----ccc
Confidence 66776 6789999999999875 33332 234567888999999999999999999999865542 333
Q ss_pred HhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827 163 TKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 241 (552)
Q Consensus 163 ~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~ 241 (552)
.++++.|.++|++ ++.|+..|+.+|..+..+++.........+.++.|++.+.+.+ +-.+...+++++.++..++..
T Consensus 159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~--~~~q~~il~~l~~l~~~~~~~ 236 (591)
T 2vgl_B 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT--EWGQIFILDCLSNYNPKDDRE 236 (591)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHTSCCCSHHH
T ss_pred ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC--chHHHHHHHHHHHhCCCChHH
Confidence 6899999999985 4578999999999998776531000011234667777776653 667778888998888654432
Q ss_pred HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccc---ccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSI---KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 318 (552)
Q Consensus 242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~---~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 318 (552)
. ..+++.+..++++.++.|+..|++++..+.... +..-+ .....+.++|+.++. +++++|..|+.+|..
T Consensus 237 ~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~--~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 237 A-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN--MLLKKLAPPLVTLLS-GEPEVQYVALRNINL 308 (591)
T ss_dssp H-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH--HHHHHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH--HHHHHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 2 346888889999999999999999999987531 11111 122456678887664 889999999999999
Q ss_pred hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHH
Q 008827 319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQAL 398 (552)
Q Consensus 319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~ 398 (552)
++...+.. +. ..+..+.... +++..+|..+++.+.+++...+ -. ..++.|...+.+.|.+++..++
T Consensus 309 i~~~~p~~----~~-~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~~n---v~-----~iv~~L~~~l~~~d~~~r~~~v 374 (591)
T 2vgl_B 309 IVQKRPEI----LK-QEIKVFFVKY-NDPIYVKLEKLDIMIRLASQAN---IA-----QVLAELKEYATEVDVDFVRKAV 374 (591)
T ss_dssp HHHHCCST----TT-TCTTTTSCCT-TSCHHHHHHHHHHHHHTCCSST---HH-----HHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHhChHH----HH-HHHHhheecc-CChHHHHHHHHHHHHHHCChhh---HH-----HHHHHHHHHHhcCCHHHHHHHH
Confidence 87543321 00 0111111111 2235566666666666543221 11 1233444555555666666666
Q ss_pred HHHHHhhcCC
Q 008827 399 ALVRNLVDGR 408 (552)
Q Consensus 399 ~~L~~l~~~~ 408 (552)
+++++++...
T Consensus 375 ~aI~~la~~~ 384 (591)
T 2vgl_B 375 RAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 6666665443
No 43
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=5.5e-20 Score=168.01 Aligned_cols=198 Identities=21% Similarity=0.189 Sum_probs=169.8
Q ss_pred cHHHHHHhcCCCCH--HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827 250 VLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 327 (552)
Q Consensus 250 ~l~~lv~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 327 (552)
.+|.++++|+++++ .++..++++|.+++...+..+.. +.+.|++|+|+++|+++++++++.|+++|.||+.+.+.++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~-I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKR-VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999887 89999999999999765555655 7889999999999999999999999999999998888899
Q ss_pred HHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc----------------CCC
Q 008827 328 STFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC----------------DPE 390 (552)
Q Consensus 328 ~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~----------------~~~ 390 (552)
..+.+.|++|.|+++|. +++..++++++.+|.||+.. ++.|..+.+. +++.|++++. ..+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 99999999999999998 57899999999999999763 4578888775 6899988763 136
Q ss_pred hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-----CchhHHHHHHHHHHhhcCC
Q 008827 391 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-----SKAEIEIQGMYVLGNVATG 452 (552)
Q Consensus 391 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-----~~~~v~~~a~~~L~~la~~ 452 (552)
++++++|.++|+|++..+++..+.+.+.+| +++.|+.++++. .+.+.++.|..+|.|++..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~G-li~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDG-LIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTT-HHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCC-cHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 799999999999999887766666666656 789999988752 3568899999999999864
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.83 E-value=7.4e-18 Score=187.89 Aligned_cols=506 Identities=14% Similarity=0.135 Sum_probs=328.8
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCC--cccccccchHHHHHhhcCC--CCcchHHHHHHHHhhcCChh-h-HHHHHhcCchH
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPK--YDFLQEENMEFLLSLLNNE--SENVSGLGASIISHSCKTSL-E-QKLLFDAGVLK 80 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~~--~~~~~~~a~~~l~~~~~~~~-~-~~~l~~~g~i~ 80 (552)
+..+...+++++..++..-.... ..-+-...++.+...+.++ ++.++..++.++..+...-. + .........++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 77888999999998875421110 0111234567778888876 67899999999988643111 1 00001122456
Q ss_pred HHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCC-ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC----
Q 008827 81 RLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTG-RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC---- 154 (552)
Q Consensus 81 ~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~-~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~---- 154 (552)
.+...+.+ ++.+|..++.+|..++...+....... . ..++.+...+.+.+..+|..|..++..++.....
T Consensus 228 ~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM----EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH----HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66666665 679999999999998865433211111 2 3455566678899999999999999988764210
Q ss_pred ------------cchhhhhHHhHHHHHHHhcCCC--------CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhh
Q 008827 155 ------------YLQDVGIKTKLINNLLELLDDP--------GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 214 (552)
Q Consensus 155 ------------~~~~~~~~~g~i~~Lv~ll~~~--------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L 214 (552)
+... ..-..++|.++..+.+. ..++..+..+|..++..... .+. ...++.+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l 378 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFAL-SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNI 378 (861)
T ss_dssp HHHCTTCSCCCCCHHH-HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHT
T ss_pred hhhccCCchhhHHHHH-HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHc
Confidence 0011 11256888998888631 24677888888887742211 000 11234444555
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCCh-hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc-cchhhhccC
Q 008827 215 QKGSLHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL-SAGSFMNET 292 (552)
Q Consensus 215 ~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~ 292 (552)
.+. ++..|+.++.+++.++.... ..-.... ..++|.++..++++++.+|..+++++..++...... ... -.-..
T Consensus 379 ~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~ 454 (861)
T 2bpt_A 379 TAD--NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ-QHLPG 454 (861)
T ss_dssp TCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT-TTHHH
T ss_pred CCC--ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH-HHHHH
Confidence 543 48899999999999986432 2111122 257899999999999999999999999998653221 001 12346
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-----hhHHHHHhhCcHHHHHHhhcCCC--HHHHHHHHHHHHHhcccC
Q 008827 293 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFT-----TRRSTFIRLGGVKLLVQLSKSMD--STIRLNALRALRNLIFLA 365 (552)
Q Consensus 293 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~ 365 (552)
++|.++..+.++ +.++..|++++.+++.... .... .+ ...++.|+..+.+.+ +.+|..++.+++.++...
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~-~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN-FY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG-GH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH-HH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 788888888776 9999999999999876421 1111 11 356788888887543 789999999999998765
Q ss_pred ChHhHHHHHHhhcHHHHHhhhcC---------------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 008827 366 EDKCKEEIFMELTASLLASLICD---------------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 430 (552)
Q Consensus 366 ~~~~~~~i~~~~~~~~l~~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L 430 (552)
+.+.... +. ..++.+++.+.+ ....++..++.++.+++............ .+++.+...+
T Consensus 532 ~~~~~~~-~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~l~~~l~~~l 606 (861)
T 2bpt_A 532 TDTVAET-SA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD---MLMGLFFRLL 606 (861)
T ss_dssp CGGGHHH-HH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH---HHHHHHHHHH
T ss_pred chhhHHH-HH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHH
Confidence 5433222 22 234455554432 13457888999999988654432221111 1677777888
Q ss_pred cccCch-hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHH
Q 008827 431 RIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR 509 (552)
Q Consensus 431 ~~~~~~-~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 509 (552)
++ .+. .+++.++.+++.++..........+ ..+++.+...+.++++.+|..++.+++.++... + +.
T Consensus 607 ~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--------~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~--~--~~ 673 (861)
T 2bpt_A 607 EK-KDSAFIEDDVFYAISALAASLGKGFEKYL--------ETFSPYLLKALNQVDSPVSITAVGFIADISNSL--E--ED 673 (861)
T ss_dssp HS-TTGGGTHHHHHHHHHHHHHHHGGGGHHHH--------HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT--G--GG
T ss_pred cc-CCCCcHHHHHHHHHHHHHHHHhhhHHHHH--------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--c--hh
Confidence 77 555 8999999999998863332233333 357788999998888999999999999988421 1 11
Q ss_pred HHHHHHCCcHHHHHhhhcCCC--ccHHHHHHHHHHHHhhh
Q 008827 510 LVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQFNSF 547 (552)
Q Consensus 510 ~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~al~~~~~~ 547 (552)
.... -..+++.+.+.+++++ +++|+.+..+++.+...
T Consensus 674 ~~~~-~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 674 FRRY-SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp GHHH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred ccch-HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 1111 1345677777777654 78999999999888764
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.82 E-value=1.3e-16 Score=162.70 Aligned_cols=452 Identities=12% Similarity=0.122 Sum_probs=327.6
Q ss_pred ccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC---CHHHHHHHHHHHHHHhcCChhh
Q 008827 35 EENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEV 110 (552)
Q Consensus 35 ~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~ 110 (552)
.++|+.|..-+++ .-.+-|+.|..-|..+++. ++.. +..++++.|+..|+. +.++-..++.+|.++...+++.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~--y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK--YRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT--TTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH--hHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 5678888888764 4467889999999999764 3332 346678999999985 3466677999998865443221
Q ss_pred h-------------hhhcc--ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH-HhHHHHHHHhcC
Q 008827 111 V-------------SQFVG--PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLELLD 174 (552)
Q Consensus 111 ~-------------~~~~~--~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~g~i~~Lv~ll~ 174 (552)
. ..+.+ ..+.+.++.++.++++++..+|..++.+|..++...+...++.+.. .++++.|+.+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 0 01110 1246788999999999999999999999999999887666777775 499999999999
Q ss_pred CC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCC--ChhhHHHHHHHHHHhhcCChhHHHHHHhcccH
Q 008827 175 DP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL--HPRRFEGILLALADMCSKLECCRSRCLSLQVL 251 (552)
Q Consensus 175 ~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l 251 (552)
++ ..+|.++...|.++..++++.++.+.-.|++++|++++..+.. -..+.+.++..+.+|...++.++..+.+.|++
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 65 4579999999999999999999999889999999999976531 13577899999999999999999999999999
Q ss_pred HHHHHhcCCCCHH------H---HHHHHHHHHHhhccccc-----ccchhhhccCcHHHHHHhhcCC--CHHHHHHHHHH
Q 008827 252 KLVVDALAHDSSD------V---RSAACMCLRSVSRSIKN-----LSAGSFMNETIVIPLVRLLDDT--STAVQVAALGA 315 (552)
Q Consensus 252 ~~lv~~L~~~~~~------v---~~~a~~~L~~ls~~~~~-----~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~a 315 (552)
|.+..+++.+... . ...+..+++-+...... ..+..+.+.|+++.|++++..+ ...++..|..+
T Consensus 257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t 336 (651)
T 3grl_A 257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT 336 (651)
T ss_dssp GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 9999999744311 1 12345566666443111 1222378899999999998754 67899999999
Q ss_pred HHHhhcCCchhHHHHHhhC---------cHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHhh--------
Q 008827 316 ISNIVVDFTTRRSTFIRLG---------GVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMEL-------- 377 (552)
Q Consensus 316 L~nl~~~~~~~~~~~~~~g---------~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~-------- 377 (552)
++.+..+++..+..+.+.. .+..|+.++.+ ....+|..++.++..+..+ +++.+..+....
T Consensus 337 la~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~-N~~~Q~~i~~~llp~~~~~~ 415 (651)
T 3grl_A 337 VSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK-NQKGQGEIVSTLLPSTIDAT 415 (651)
T ss_dssp HHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTSSCCCCCT
T ss_pred HHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC-CHHHHHHHHHhcCCcccccC
Confidence 9999999988887776532 34444555544 4578999999999988774 345555555431
Q ss_pred ----cH-HHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-----cC----chHHHHHHHhcccCchhHHHHHH
Q 008827 378 ----TA-SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-----DG----IILDAVGRQLRIASKAEIEIQGM 443 (552)
Q Consensus 378 ----~~-~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~----~~~~~l~~~L~~~~~~~v~~~a~ 443 (552)
.. ..+..-+.+.|+.-..-|..++.++..++++..+.+++- .| ..++.++..|....++.++..-+
T Consensus 416 ~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL 495 (651)
T 3grl_A 416 GNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLL 495 (651)
T ss_dssp TSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHH
Confidence 01 124455556677655668888999998877665555441 11 25777777776546778888888
Q ss_pred HHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC--CC--hhHHHHHHHHHH
Q 008827 444 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--ND--SRLRTAAVWAVL 496 (552)
Q Consensus 444 ~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~--~~--~~~~~~a~~~l~ 496 (552)
..|..+..+++.....+++ +..-++.|+..+.+ ++ .-++--++..|+
T Consensus 496 ~LL~~WL~e~p~AV~dFL~------~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLG 546 (651)
T 3grl_A 496 MLLCTWLSNCPIAVTHFLH------NSANVPFLTGQIAENLGEEEQLVQGLCALLLG 546 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHH------STTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHc------CCchHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 8888888888888887876 24567899988753 22 334444444444
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.81 E-value=6.3e-18 Score=188.44 Aligned_cols=511 Identities=15% Similarity=0.108 Sum_probs=332.8
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCC-CCcchHHHHHHHHhhcCChhhHH---HHHhcCch
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQK---LLFDAGVL 79 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~a~~~l~~~~~~~~~~~---~l~~~g~i 79 (552)
.+++..+...+..++..+....... ..+ ++.++.++..++++ ++.+++.+..++..+++...... .-.....+
T Consensus 105 ~~~~~~vr~~~~~~l~~i~~~~~p~-~~w--~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 105 VSIEPRIANAAAQLIAAIADIELPH-GAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHGGG-TCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhhCcc-ccc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 3456677777778887775442110 112 46789999999887 88899999999998876321100 00112245
Q ss_pred HHHHHhhcC---CHHHHHHHHHHHHHHhcCChhhhh-hhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc
Q 008827 80 KRLTSLLGG---SLIQRDASLESIATIFKNNPEVVS-QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY 155 (552)
Q Consensus 80 ~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~ 155 (552)
+.+...+.+ +..+|..++.+++.+...-..... ... ....++.+...+.++++.+|..|..+|..+....+..
T Consensus 182 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~---~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE---RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHH---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666765 468999999999987543221100 000 0124556667888999999999999999998765432
Q ss_pred chhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHH-----------------HHHHHHhCcHHHHHHhhhcC
Q 008827 156 LQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDM-----------------QKLAFEVNGVDKLYNHLQKG 217 (552)
Q Consensus 156 ~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~-----------------~~~~~~~~~i~~L~~~L~~~ 217 (552)
... .....+++.+...+.+ +.+++..+...+..++...... .+.. -...+|.++..+...
T Consensus 259 ~~~-~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 259 MKP-YMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQ 336 (861)
T ss_dssp CHH-HHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCC
T ss_pred HHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhc
Confidence 221 2222567777777764 4578888988888876542210 0111 134567888777653
Q ss_pred C-----CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc-cccchhhhcc
Q 008827 218 S-----LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-NLSAGSFMNE 291 (552)
Q Consensus 218 ~-----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~ 291 (552)
+ .++.++..+..+|..++...+ ..+ -..+++.+.+.+++.++.+|.+++.+++.++.... ..-.. .-.
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~--~l~ 410 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNCG---NHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTY--YVH 410 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHHG---GGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH--HHH
T ss_pred ccccccccCcHHHHHHHHHHHHHHHcc---HhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHH--HHH
Confidence 2 235688899999998875221 111 12467788888889999999999999999986532 11111 123
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC----
Q 008827 292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE---- 366 (552)
Q Consensus 292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---- 366 (552)
.+++.++..+.++++.+|..+++++++++....... ..-.-...++.+++.+++. +.+|..+++++.+++...+
T Consensus 411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~ 489 (861)
T 2bpt_A 411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATP 489 (861)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccc
Confidence 578889999999999999999999999885322100 0001135678888888776 8999999999999876421
Q ss_pred hHhHHHHHHhhcHHHHHhhhcCCC--hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-----------
Q 008827 367 DKCKEEIFMELTASLLASLICDPE--PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA----------- 433 (552)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~----------- 433 (552)
...... + ...++.+++++.+.+ +.++..++.+++.+....++.....+.. +++.+...|...
T Consensus 490 ~~l~~~-~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~---l~~~l~~~l~~~~~~~~~i~~~~ 564 (861)
T 2bpt_A 490 SPIYNF-Y-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS---ISTFVMDKLGQTMSVDENQLTLE 564 (861)
T ss_dssp CGGGGG-H-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH---HHHHHHHHHHHHTTSCGGGCCHH
T ss_pred hhhHHH-H-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHH---HHHHHHHHHHHHHhhhcccCChh
Confidence 111111 1 234677888887544 7899999999999987655433333332 455555555421
Q ss_pred ---CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh-hHHHHHHHHHHhhcCCCCCCCHHH
Q 008827 434 ---SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS-RLRTAAVWAVLNLTCSSSPGSSGR 509 (552)
Q Consensus 434 ---~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~ 509 (552)
....++..++.+|++++.+........+ ..+++.+...+++.+. .++..+..+++.++... + .+.
T Consensus 565 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--------~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~--~-~~~ 633 (861)
T 2bpt_A 565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVA--------DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL--G-KGF 633 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--------HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH--G-GGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH--h-hhH
Confidence 2345778899999988864432222222 3566788888988877 89999999999998411 1 111
Q ss_pred HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
...+ ..+++.|.+.+++++++++..+..++..+.+.
T Consensus 634 ~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 634 EKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 1222 22678888888877888999888888877654
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.80 E-value=6.3e-17 Score=171.75 Aligned_cols=467 Identities=12% Similarity=0.109 Sum_probs=322.8
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT 83 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~ 83 (552)
.+++..+.+.+-.++..+.... .+.. .-++..+..-|+++++.++..|..+++++. .++.-. ..++.+.
T Consensus 59 ~s~~~~~Krl~yl~l~~~~~~~----~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~-----~l~~~l~ 127 (591)
T 2vgl_B 59 QTDNLELKKLVYLYLMNYAKSQ----PDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITE-----YLCEPLR 127 (591)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHS----HHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHH-----HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcccC----chHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHH-----HHHHHHH
Confidence 4566677777777777665421 1221 235677888888999999999999999986 333221 2357788
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH
Q 008827 84 SLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK 162 (552)
Q Consensus 84 ~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 162 (552)
.+|.+ ++.||..|+.|+..++..+++... +.+.++.+..++.|+++.|+..|+.+|..++...+... .....
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~~~------~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-~~~l~ 200 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDINAQMVE------DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-LLDLN 200 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSSCCCHH------HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-SCCCH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhhChhhcc------cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-chhcc
Confidence 88887 789999999999999876655421 13466788889999999999999999999988654321 01223
Q ss_pred HhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC---C
Q 008827 163 TKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK---L 238 (552)
Q Consensus 163 ~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~---~ 238 (552)
.+.++.|++.+. .++..+.....+++++...++... ...++.+..++++. ++.++..|++++..+... +
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBT
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCC
Confidence 456777777776 345567778888888876554322 23466777777765 478999999999998641 2
Q ss_pred hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 318 (552)
Q Consensus 239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 318 (552)
++....+ -..+.+.++.++. +++.+|..++.++..+....+.. .. ..+..+.... +++..++..|+..+.+
T Consensus 274 ~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~-----~~-~~~~~~~~~~-~d~~~Ir~~al~~L~~ 344 (591)
T 2vgl_B 274 SDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEI-----LK-QEIKVFFVKY-NDPIYVKLEKLDIMIR 344 (591)
T ss_dssp TBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCST-----TT-TCTTTTSCCT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHH-----HH-HHHHhheecc-CChHHHHHHHHHHHHH
Confidence 2322222 2345677776664 88999999999999997653332 11 1122222222 4449999999999999
Q ss_pred hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHH
Q 008827 319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQAL 398 (552)
Q Consensus 319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~ 398 (552)
++... . .+ .+++.|.+++.+.+..+|..+++++++++...++ . ....++.+++++.+....+...++
T Consensus 345 l~~~~-n-v~-----~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-~-----~~~~v~~Ll~ll~~~~~~v~~e~i 411 (591)
T 2vgl_B 345 LASQA-N-IA-----QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-S-----AERCVSTLLDLIQTKVNYVVQEAI 411 (591)
T ss_dssp TCCSS-T-HH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-H-----HHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HCChh-h-HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-H-----HHHHHHHHHHHHcccchHHHHHHH
Confidence 88543 2 21 3567788999999999999999999999874321 1 234578999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 008827 399 ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK 478 (552)
Q Consensus 399 ~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~ 478 (552)
..++++....++.. +. +++.|...+.+...++++..++|+||.++...++ . ..++..+++
T Consensus 412 ~~l~~ii~~~p~~~-----~~--~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-~------------~~~l~~l~~ 471 (591)
T 2vgl_B 412 VVIRDIFRKYPNKY-----ES--IIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-A------------DELLESFLE 471 (591)
T ss_dssp HHHHHHHHHSCSSC-----CT--THHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-H------------HHHHHHHST
T ss_pred HHHHHHHHHCcchH-----HH--HHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-H------------HHHHHHHHH
Confidence 89999876555321 11 5677777787657789999999999999865432 1 233345555
Q ss_pred hhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh-hcC-CCccHHHHHHHHHHHHhh
Q 008827 479 FLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM-VND-PCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 479 lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l-l~~-~~~~v~~~a~~al~~~~~ 546 (552)
.+.+.++.+|..++.++..+.....+...+ .+..+.+. ..| .++|||+||...+.-+..
T Consensus 472 ~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~---------~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 472 GFHDESTQVQLTLLTAIVKLFLKKPSETQE---------LVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHTTCCSTTHH---------HHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCchHHHH---------HHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 555678899999999999998521111111 23334443 344 678999999888776643
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.79 E-value=1.5e-16 Score=177.67 Aligned_cols=506 Identities=12% Similarity=0.088 Sum_probs=326.2
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCccc--ccccchHHHHHhhcCC--CCcchHHHHHHHHhhcCChh-h-HHHHHhcCchH
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDF--LQEENMEFLLSLLNNE--SENVSGLGASIISHSCKTSL-E-QKLLFDAGVLK 80 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~--~~~~~i~~l~~ll~~~--~~~~~~~a~~~l~~~~~~~~-~-~~~l~~~g~i~ 80 (552)
+..+...++++|..+...-. + ..+ +-+..++.+...++++ +..++..+..++..+...-. + .........++
T Consensus 143 ~~~~r~~al~~l~~l~~~~~-~-~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~ 220 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDID-P-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSC-H-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-H-hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67788999999998875421 1 111 1235677788888876 56789999999998764211 1 10111122566
Q ss_pred HHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCC------
Q 008827 81 RLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP------ 153 (552)
Q Consensus 81 ~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~------ 153 (552)
.+...+.+ ++++|..++.+|..++...+....... ....++.++..+++.+..+|..|..++..++....
T Consensus 221 ~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 297 (876)
T 1qgr_A 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH---TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 67776765 678999999999999865543321111 12566777778889999999999999988876420
Q ss_pred -------------CcchhhhhHHhHHHHHHHhcCC--------CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHH
Q 008827 154 -------------CYLQDVGIKTKLINNLLELLDD--------PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYN 212 (552)
Q Consensus 154 -------------~~~~~~~~~~g~i~~Lv~ll~~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 212 (552)
........-...+|.+++.+.+ +..+|..|+.++..++..... .++ ...++.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~ 373 (876)
T 1qgr_A 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKE 373 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHH
T ss_pred ccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHH
Confidence 0000000124578888888851 235677888888887643211 011 123455555
Q ss_pred hhhcCCCChhhHHHHHHHHHHhhcCCh-hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-chhhhc
Q 008827 213 HLQKGSLHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS-AGSFMN 290 (552)
Q Consensus 213 ~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~-~~~~~~ 290 (552)
.+.+. ++.+|+.++++++.++.... +..... -.+++|.++..++++++.+|..|++++.+++...+... .. -.-
T Consensus 374 ~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~l 449 (876)
T 1qgr_A 374 HIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND-VYL 449 (876)
T ss_dssp HTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST-TTH
T ss_pred HccCC--ChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH-HHH
Confidence 55554 58999999999999986533 221122 23589999999999999999999999999987643210 01 123
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc---------------hhHHHHHhhCcHHHHHHhhcCC---CHHHHH
Q 008827 291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT---------------TRRSTFIRLGGVKLLVQLSKSM---DSTIRL 352 (552)
Q Consensus 291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~---------------~~~~~~~~~g~i~~L~~ll~~~---~~~v~~ 352 (552)
..+++.++..+.++ +.++..|+++|.+++.... ... ... ...++.|...+... +..+|.
T Consensus 450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-SSF-ELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-TTH-HHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-HhH-HHHHHHHHHHHhCcCcchhhHHH
Confidence 46778888888875 9999999999999885321 011 111 35778888887764 357888
Q ss_pred HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc-----------CCC----hhHHHHHHHHHHHhhcCCc-chHHHHH
Q 008827 353 NALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-----------DPE----PSVQEQALALVRNLVDGRI-NSVEYIF 416 (552)
Q Consensus 353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~-----------~~~----~~v~~~a~~~L~~l~~~~~-~~~~~i~ 416 (552)
.+..+++.++...+.+... .+ ...++.+++.+. +.| ++++..++.++..++..-. +.....+
T Consensus 527 ~~~~~l~~l~~~~~~~~~~-~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 527 SAYESLMEIVKNSAKDCYP-AV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHTCCSTTHH-HH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHCchhhHH-HH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 8999998887654433222 22 223444444332 222 4567888999999987654 3333222
Q ss_pred hhcCchHHHHHHHhcccC-chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-ChhHHHHHHHH
Q 008827 417 AEDGIILDAVGRQLRIAS-KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWA 494 (552)
Q Consensus 417 ~~~~~~~~~l~~~L~~~~-~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~a~~~ 494 (552)
.. +++.+...+.+.. +..++..++.+++.++..........+ ..+++.+...|.+. +..+|..|+++
T Consensus 605 ~~---l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~vr~~a~~~ 673 (876)
T 1qgr_A 605 DV---VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--------EAFKPFLGIGLKNYAEYQVCLAAVGL 673 (876)
T ss_dssp HH---HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--------HHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 21 6788888887632 247899999999998863222222223 34668888888886 88999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC--CCccHHHHHHHHHHHHhh
Q 008827 495 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND--PCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 495 l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~a~~al~~~~~ 546 (552)
++.++... + +..... -..+++.|.+.+++ .+.+++..+.++++.+..
T Consensus 674 l~~l~~~~--~--~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 674 VGDLCRAL--Q--SNIIPF-CDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHH--G--GGGHHH-HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHH--H--Hhhhhh-HHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 99998411 1 111221 13457778787765 356899999999998875
No 49
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.78 E-value=2.5e-16 Score=181.90 Aligned_cols=513 Identities=13% Similarity=0.096 Sum_probs=342.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHH
Q 008827 3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRL 82 (552)
Q Consensus 3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L 82 (552)
+.++|+.....|+..|.+....+...-.+......++.+++.|.++++.+|..|+.+|..++...... .....++.+
T Consensus 15 l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~~~i~~~L 91 (1230)
T 1u6g_C 15 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTL 91 (1230)
T ss_dssp TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHHHHHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHH
Confidence 46789999999999999887654332111122356788999999888999999999999987543221 112356677
Q ss_pred HHhhcC-CHHHHHHHHHHHHHHhcCChhhh--hhhccccCCccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827 83 TSLLGG-SLIQRDASLESIATIFKNNPEVV--SQFVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQD 158 (552)
Q Consensus 83 ~~lL~~-~~~v~~~al~~L~~l~~~~~~~~--~~~~~~~~~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~~~~~ 158 (552)
...+.+ ++.+|..+..+|+.++..-.... ..+........++.++..++ ++++.+|..|..+|..++...+.....
T Consensus 92 l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~ 171 (1230)
T 1u6g_C 92 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN 171 (1230)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH
Confidence 777765 56889999999999875432210 00000001356778888888 588999999999999998654332221
Q ss_pred hhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC
Q 008827 159 VGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK 237 (552)
Q Consensus 159 ~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~ 237 (552)
.....++.|++.+.+ ++.+|..|+.++..++...+.. . -...++.+++.|.+.. ++..+..++.+++.++..
T Consensus 172 --~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 172 --FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp --THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHH
Confidence 235688888888874 4578999999999998755431 1 1235788888887653 245677788888888753
Q ss_pred ChhHHHHHH--hcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC------------
Q 008827 238 LECCRSRCL--SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD------------ 303 (552)
Q Consensus 238 ~~~~~~~~~--~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~------------ 303 (552)
.+. .+. -..++|.++..++++++++|..+..++..++...+..-.. .-..++|.++..+..
T Consensus 245 ~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 245 AGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP--HVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp SSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCCC-----------
T ss_pred hHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHH--hHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 221 111 1358999999999999999999999999997754321111 223455555555531
Q ss_pred -------------------------CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 304 -------------------------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 358 (552)
Q Consensus 304 -------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL 358 (552)
..+++|..|+.++..++...+.....++ ...++.++..+.+.++.+|..++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l 398 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAY 398 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1245788999999998875443222333 46778888888888999999999988
Q ss_pred HHhcccCCh---------------HhHHHH--HHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 008827 359 RNLIFLAED---------------KCKEEI--FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 421 (552)
Q Consensus 359 ~~l~~~~~~---------------~~~~~i--~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~ 421 (552)
..++..... .+...+ .-...++.+.+.++++++.++..++.+++.++...++.....+..
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~--- 475 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV--- 475 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH---
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHH---
Confidence 877642110 011111 112346667777999999999999999999886544322211211
Q ss_pred hHHHHHHHhcccCc--hhHHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhh
Q 008827 422 ILDAVGRQLRIASK--AEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL 498 (552)
Q Consensus 422 ~~~~l~~~L~~~~~--~~v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l 498 (552)
+++.+...|.+ ++ ..++..++..+..+... .+......+ ..+++.++..+++.+..++..|+.++..+
T Consensus 476 ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--------~~llp~L~~~l~d~~~~v~~~al~~l~~l 546 (1230)
T 1u6g_C 476 LVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHV--------QALVPPVVACVGDPFYKITSEALLVTQQL 546 (1230)
T ss_dssp HHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--------TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 67788888876 43 47899999998888642 222223333 46778999999999999988898888888
Q ss_pred cCCCCC-------CCHHHHHHHHHCCcHHHHHhhh--cCCCccHHHHHHHHHHHHhhhc
Q 008827 499 TCSSSP-------GSSGRLVKLHDAGIVSHVKNMV--NDPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 499 ~~~~~~-------~~~~~~~~l~~~g~~~~L~~ll--~~~~~~v~~~a~~al~~~~~~~ 548 (552)
+..-.. ....... .+++.+.+.+ .|+++++|+.|..+++.+.+..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~-----~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 547 VKVIRPLDQPSSFDATPYIK-----DLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHCCSSSCCCCCCHHHHH-----HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCcccccccchHHHHH-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 721000 1122222 2467777777 5677889999999999988763
No 50
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.77 E-value=1.1e-16 Score=178.77 Aligned_cols=508 Identities=12% Similarity=0.108 Sum_probs=312.2
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-----CCccc--cc----ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHh
Q 008827 7 YMEVVDAGARSLKMIYQSKMA-----PKYDF--LQ----EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD 75 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~-----~~~~~--~~----~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~ 75 (552)
+..+...|...|++....... .+..| +. ...-+.++..|.++++.+ ..++.++..++....... .-
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~--~w 126 (876)
T 1qgr_A 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVN--QW 126 (876)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGT--CC
T ss_pred CHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccc--cc
Confidence 456667777788876533210 00111 11 123345888888888888 899999988874321100 01
Q ss_pred cCchHHHHHhhcC---CHHHHHHHHHHHHHHhcCC-hhhhhhhccccCCccHHHHHHHHhcC--ChhhHHHHHHHHHHHh
Q 008827 76 AGVLKRLTSLLGG---SLIQRDASLESIATIFKNN-PEVVSQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIR 149 (552)
Q Consensus 76 ~g~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~vr~~A~~~L~~l~ 149 (552)
...++.++..+.+ ++.+|..++.+|+.++... ++..... ....++.+...++++ ++.+|..|.+++..+.
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~----~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK----SNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG----HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 2356778887765 4578999999999998642 2211111 134456666777776 6899999999999887
Q ss_pred hhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHH
Q 008827 150 NASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGIL 228 (552)
Q Consensus 150 ~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~ 228 (552)
..-..+.........+++.+.+++.+ +.+++..++.+|..++...+..-...+....++.++..+.+. ++.++..++
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al 280 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGI 280 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHH
Confidence 53211111111123478888887763 467888999999998865543222222235567777766543 477899999
Q ss_pred HHHHHhhcCChhH---------------H---HHH--HhcccHHHHHHhcC-------CCCHHHHHHHHHHHHHhhcccc
Q 008827 229 LALADMCSKLECC---------------R---SRC--LSLQVLKLVVDALA-------HDSSDVRSAACMCLRSVSRSIK 281 (552)
Q Consensus 229 ~aL~~l~~~~~~~---------------~---~~~--~~~~~l~~lv~~L~-------~~~~~v~~~a~~~L~~ls~~~~ 281 (552)
..+..++...... + ... .-..++|.+++.+. ++++.+|.++..++..++...+
T Consensus 281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~ 360 (876)
T 1qgr_A 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc
Confidence 8888887531100 0 000 01246777888875 3467899999999999987643
Q ss_pred cccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 282 NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT-TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 360 (552)
Q Consensus 282 ~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 360 (552)
. . + -..+++.+...+.++++.+|..|++++++++.+.. ....... .+.++.++..+.++++.+|..|++++++
T Consensus 361 ~---~-~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~ 434 (876)
T 1qgr_A 361 D---D-I-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (876)
T ss_dssp G---G-G-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred H---h-h-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1 1 2 23567777788889999999999999999997665 2222222 4688999999999999999999999999
Q ss_pred hcccCChHh-HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCc--------------chHHHHHhhcCchHHH
Q 008827 361 LIFLAEDKC-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI--------------NSVEYIFAEDGIILDA 425 (552)
Q Consensus 361 l~~~~~~~~-~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~i~~~~~~~~~~ 425 (552)
++....+.. .... -...++.++..+.++ +.++..+++++.+++.... +.....+. .+++.
T Consensus 435 ~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---~il~~ 509 (876)
T 1qgr_A 435 ICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE---LIVQK 509 (876)
T ss_dssp HHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH---HHHHH
T ss_pred HHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHH---HHHHH
Confidence 987533211 0011 124567788888774 8899999999999875311 00000011 04444
Q ss_pred HHHHhcccC--chhHHHH--------------------------------------------------------HHHHHH
Q 008827 426 VGRQLRIAS--KAEIEIQ--------------------------------------------------------GMYVLG 447 (552)
Q Consensus 426 l~~~L~~~~--~~~v~~~--------------------------------------------------------a~~~L~ 447 (552)
+.+.+.... +..++.. ++.++.
T Consensus 510 L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 589 (876)
T 1qgr_A 510 LLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQ 589 (876)
T ss_dssp HHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHH
Confidence 544444311 1233333 334444
Q ss_pred hhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcCCC--hhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh
Q 008827 448 NVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSND--SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN 524 (552)
Q Consensus 448 ~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ 524 (552)
.++.... ......+ ..+++.+...+++.+ ..++..++.+++.++.. ..+....... .+++.|..
T Consensus 590 ~l~~~~~~~~~~~~~--------~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~-~~~~~l~~ 656 (876)
T 1qgr_A 590 NVLRKVQHQDALQIS--------DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV----LGGEFLKYME-AFKPFLGI 656 (876)
T ss_dssp HHHTTSCHHHHHTTH--------HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH----HGGGGGGGHH-HHHHHHHH
T ss_pred HHHHHhChhhhhHHH--------HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH----HHhhHHHHHH-HHHHHHHH
Confidence 4333221 1111111 345677788887764 47899999999998841 1111111111 25677888
Q ss_pred hhcCC-CccHHHHHHHHHHHHhhh
Q 008827 525 MVNDP-CLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 525 ll~~~-~~~v~~~a~~al~~~~~~ 547 (552)
.+++. +++++..+.+++..+...
T Consensus 657 ~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 657 GLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHHHHHHHHHHH
Confidence 77765 788999999988887653
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.77 E-value=6e-16 Score=164.78 Aligned_cols=396 Identities=13% Similarity=0.088 Sum_probs=277.7
Q ss_pred chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhc
Q 008827 37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 115 (552)
Q Consensus 37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~ 115 (552)
+....+.++.+++...+..+.-.+..+++.+..... -++..+.+-|++ ++.+|..|+.+|+.+.. ++..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~---- 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC---- 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH----
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH----
Confidence 345566777777777777777777777765433211 235566666776 67899999999999873 3332
Q ss_pred cccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCC
Q 008827 116 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK 194 (552)
Q Consensus 116 ~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~ 194 (552)
...++.+.+++++.++.||..|+.++..++...++. + .++++.+.+++.+ ++.|+..|+.+|..+...+
T Consensus 141 ----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~-----v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 141 ----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL-----M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp ----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-----G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-----H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 245677888999999999999999999999865531 1 3678888888885 4578999999999998776
Q ss_pred HHHHHHHHHhCcHHHHHHhhhcC-------------CCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC--
Q 008827 195 EDMQKLAFEVNGVDKLYNHLQKG-------------SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-- 259 (552)
Q Consensus 195 ~~~~~~~~~~~~i~~L~~~L~~~-------------~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-- 259 (552)
++.... -...+|.+++.|.+- ..++-.+..++.+|+.++..++.... ...+.+..+++
T Consensus 211 ~~~~~~--~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~ 283 (618)
T 1w63_A 211 PDMLAH--FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT 283 (618)
T ss_dssp HHHHHH--HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence 653111 135688888877641 12466778889999999876654332 23444544442
Q ss_pred ----CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827 260 ----HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 335 (552)
Q Consensus 260 ----~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~ 335 (552)
+.+..+...+++++..+... +. +. ..+++.|..++.+++++++..|..+|..++...+ ..+ ...
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~-~~-----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p----~~~-~~~ 351 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSE-SG-----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH----NAV-QRH 351 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCC-HH-----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH----HHH-GGG
T ss_pred ccccchHHHHHHHHHHHHHhcCCC-HH-----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH----HHH-HHH
Confidence 34568999999999887543 11 11 2467889999999999999999999999985432 222 246
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 415 (552)
Q Consensus 336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 415 (552)
.+.++..+.+++..+|..++.+|..++...+ . .. .++.+...+.+.+.+++..++.+++.++...+....+
T Consensus 352 ~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~- 422 (618)
T 1w63_A 352 RSTIVDCLKDLDVSIKRRAMELSFALVNGNN--I-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW- 422 (618)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--T-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH-
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHccccc--H-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH-
Confidence 6788899999999999999999999987433 1 12 3466777777889999999999999999764433333
Q ss_pred HhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC--CChhHHHHHHH
Q 008827 416 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVW 493 (552)
Q Consensus 416 ~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~--~~~~~~~~a~~ 493 (552)
.++.+.++|.. ....++..++..+..+....++.+..+ ++.|..++.+ ....+...++|
T Consensus 423 ------~v~~ll~lL~~-~~~~v~~~~~~~l~~ii~~~p~l~~~~------------v~~L~~~l~~~~~~~~~~~~~~w 483 (618)
T 1w63_A 423 ------HIDTIMRVLTT-AGSYVRDDAVPNLIQLITNSVEMHAYT------------VQRLYKAILGDYSQQPLVQVAAW 483 (618)
T ss_dssp ------HHHHHHHHHHH-TGGGSCSSHHHHHHHHHHHSCSTHHHH------------HHHHHHHHHHCCSCSHHHHHHHH
T ss_pred ------HHHHHHHHHHh-ccchhHHHHHHHHHHHHhcChhHHHHH------------HHHHHHHHhcccccHHHHHHHHH
Confidence 45666677766 445555556666666655444434333 3567777764 23444557999
Q ss_pred HHHhhc
Q 008827 494 AVLNLT 499 (552)
Q Consensus 494 ~l~~l~ 499 (552)
+|+.++
T Consensus 484 ilGEy~ 489 (618)
T 1w63_A 484 CIGEYG 489 (618)
T ss_dssp HHHHHH
T ss_pred HHhhhH
Confidence 999997
No 52
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.76 E-value=9.1e-16 Score=156.51 Aligned_cols=373 Identities=13% Similarity=0.130 Sum_probs=276.7
Q ss_pred CccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC---CCchhchHHHHHHHhhcCCH
Q 008827 120 GRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD---PGRVGDEASFAFSSLIAEKE 195 (552)
Q Consensus 120 ~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~---~~~v~~~a~~~L~~l~~~~~ 195 (552)
.++++.++. +-.+.-.+-|..|+..|..+++..+ ..+..++++.|+..|++ +.++-..+..+|.++...++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 345666665 3346777889999999999987533 24567899999999973 33455567788877665433
Q ss_pred H-----------------HHHHH-HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChh-HHHHHHhc-ccHHHHH
Q 008827 196 D-----------------MQKLA-FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC-CRSRCLSL-QVLKLVV 255 (552)
Q Consensus 196 ~-----------------~~~~~-~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~-~~~~~~~~-~~l~~lv 255 (552)
+ +...+ .+.+.++.|+++|... +..+|..++..|..++...+. +++.+... ++++.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~--df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF--DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 2 11122 3467899999998765 488999999999999987766 78888854 8999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCchhHHHHH
Q 008827 256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFI 331 (552)
Q Consensus 256 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~~ 331 (552)
.+|++....+|-.+...|..++++..+++.. +.-+|+++.|+.+++.+ ...+..-|...+.||...+..++..+.
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQkl-VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKI-VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHH-HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999997777665 66779999999999754 348899999999999999888898999
Q ss_pred hhCcHHHHHHhhcCCCH------HHHHH---HHHHHHHhcccCC-----hHhHHHHHHhhcHHHHHhhhcCC--ChhHHH
Q 008827 332 RLGGVKLLVQLSKSMDS------TIRLN---ALRALRNLIFLAE-----DKCKEEIFMELTASLLASLICDP--EPSVQE 395 (552)
Q Consensus 332 ~~g~i~~L~~ll~~~~~------~v~~~---a~~aL~~l~~~~~-----~~~~~~i~~~~~~~~l~~ll~~~--~~~v~~ 395 (552)
|.|.++.|..+++.+.+ ....+ ++.++.-++.... +.++..+.+.|+++.+++++.++ ...++.
T Consensus 252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~ 331 (651)
T 3grl_A 252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT 331 (651)
T ss_dssp HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence 99999999999975432 23334 4444455554322 24677888999999999998865 678999
Q ss_pred HHHHHHHHhhcCCcchHHHHHhhc-------CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhh
Q 008827 396 QALALVRNLVDGRINSVEYIFAED-------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 468 (552)
Q Consensus 396 ~a~~~L~~l~~~~~~~~~~i~~~~-------~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~ 468 (552)
.|+.+++.+..+++...+++.+.. ..++..+..++.+.....+|..+++++..+..+++.....++...+|..
T Consensus 332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~ 411 (651)
T 3grl_A 332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPST 411 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcc
Confidence 999999999999876655554432 1255666666666456789999999999999988765555655322211
Q ss_pred hhh------hHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 469 ENK------AQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 469 ~~~------~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
..+ .-..+...+-+.|+.--.-|+.++.++..
T Consensus 412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~ 449 (651)
T 3grl_A 412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ 449 (651)
T ss_dssp CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence 000 11234556666777555668888888886
No 53
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.72 E-value=1.4e-15 Score=175.75 Aligned_cols=511 Identities=12% Similarity=0.095 Sum_probs=329.1
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhH------HHHHhcC
Q 008827 4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQ------KLLFDAG 77 (552)
Q Consensus 4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~------~~l~~~g 77 (552)
..++..+...|+++|..+...- + . -.-+..++.++..+.++++.+|..++.+|..++...... ..-.-..
T Consensus 58 ~d~~~~vR~~A~~~L~~l~~~~--~-~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~ 133 (1230)
T 1u6g_C 58 EDKNGEVQNLAVKCLGPLVSKV--K-E-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK 133 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTS--C-H-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhC--C-H-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH
Confidence 4567888889999999887432 1 1 122356788888888888899999999988876422111 1112234
Q ss_pred chHHHHHhhc-C-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc
Q 008827 78 VLKRLTSLLG-G-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY 155 (552)
Q Consensus 78 ~i~~L~~lL~-~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~ 155 (552)
.+|.|+..+. + ++.++..|+.+|+.++...+..... .....++.++..+.++++.+|..|+.++..++...+..
T Consensus 134 llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~----~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~ 209 (1230)
T 1u6g_C 134 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN----FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209 (1230)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT----THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH
Confidence 6888888887 3 5789999999999988542221100 01345566667788999999999999999998754332
Q ss_pred chhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 008827 156 LQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALAD 233 (552)
Q Consensus 156 ~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~ 233 (552)
+ ....++.+++.+.+ +..++..++.+++.++...+..-. -+-...++.+++.+.+. ++.+|+.++.++..
T Consensus 210 ----~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~ 281 (1230)
T 1u6g_C 210 ----V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVD--DDELREYCIQAFES 281 (1230)
T ss_dssp ------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 2 23478888888762 246788889999888753321000 01134578888877764 47789999999888
Q ss_pred hhcCCh-hHHHHHHhcccHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHH
Q 008827 234 MCSKLE-CCRSRCLSLQVLKLVVDALA-------------------------------------HDSSDVRSAACMCLRS 275 (552)
Q Consensus 234 l~~~~~-~~~~~~~~~~~l~~lv~~L~-------------------------------------~~~~~v~~~a~~~L~~ 275 (552)
++...+ ..+..+ ..++|.++..+. +..+.+|..|+.++..
T Consensus 282 l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~ 359 (1230)
T 1u6g_C 282 FVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 359 (1230)
T ss_dssp HHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHH
T ss_pred HHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHH
Confidence 876322 111111 123444444432 1235789999999999
Q ss_pred hhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch----------------hHHHH--HhhCcHH
Q 008827 276 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT----------------RRSTF--IRLGGVK 337 (552)
Q Consensus 276 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~----------------~~~~~--~~~g~i~ 337 (552)
++...+..-.. .-..++|.++..+.+.++++|..+..++..++..... ....+ .-...++
T Consensus 360 l~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 437 (1230)
T 1u6g_C 360 VVSTRHEMLPE--FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVK 437 (1230)
T ss_dssp HHTTCCTTHHH--HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHH
T ss_pred HHHhchhHHHH--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHH
Confidence 98753321111 3356788888888888999999999998877642110 01111 1124566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCCh--hHHHHHHHHHHHhhcC-CcchHHH
Q 008827 338 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP--SVQEQALALVRNLVDG-RINSVEY 414 (552)
Q Consensus 338 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~--~v~~~a~~~L~~l~~~-~~~~~~~ 414 (552)
.+.+.+++++..+|..++.+++.++......... . -...++.+...+.++.+ .++..++..+..+... .++....
T Consensus 438 ~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~-l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 515 (1230)
T 1u6g_C 438 ALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-H-IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP 515 (1230)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-G-HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-H-HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHh
Confidence 7777799999999999999999887643211111 1 12356788888887764 8999999999998753 2332333
Q ss_pred HHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC--CC-----hhhHHHHHHHhhHhhhhhhHHHHHHhh--cCCCh
Q 008827 415 IFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT--GK-----ESHKEAVMDQLLLRAENKAQSCIIKFL--QSNDS 485 (552)
Q Consensus 415 i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~--~~-----~~~~~~i~~~~~~~~~~~~v~~Lv~lL--~~~~~ 485 (552)
.+.. +++.+...+.+ +++.++..+++++..++. +. +......+ ..+++.++..+ .+.++
T Consensus 516 ~l~~---llp~L~~~l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--------~~ll~~ll~~l~~~d~~~ 583 (1230)
T 1u6g_C 516 HVQA---LVPPVVACVGD-PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI--------KDLFTCTIKRLKAADIDQ 583 (1230)
T ss_dssp HHTT---THHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--------HHHHHHHHHHHSCSSSCH
T ss_pred HHHH---HHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhcCcccccccchHHHH--------HHHHHHHHHHHhccCCCH
Confidence 3332 68888888877 778888888888887773 21 01122233 35667888888 66788
Q ss_pred hHHHHHHHHHHhhcCCCCCC-C---HHHHHHHH-------------------------------HCCcHHHHHhhhcCCC
Q 008827 486 RLRTAAVWAVLNLTCSSSPG-S---SGRLVKLH-------------------------------DAGIVSHVKNMVNDPC 530 (552)
Q Consensus 486 ~~~~~a~~~l~~l~~~~~~~-~---~~~~~~l~-------------------------------~~g~~~~L~~ll~~~~ 530 (552)
.+|..|+.+++.++....+. . ......+. -..+++.|.+.+++++
T Consensus 584 ~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~ 663 (1230)
T 1u6g_C 584 EVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQ 663 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCC
Confidence 99999999999987421100 0 11111110 0123455666666777
Q ss_pred ccHHHHHHHHHHHHhhhc
Q 008827 531 LDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 531 ~~v~~~a~~al~~~~~~~ 548 (552)
..+|+.+..++..+....
T Consensus 664 ~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 664 RALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 888999999998887653
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.72 E-value=2.7e-15 Score=159.73 Aligned_cols=440 Identities=14% Similarity=0.133 Sum_probs=300.1
Q ss_pred chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhc
Q 008827 37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 115 (552)
Q Consensus 37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~ 115 (552)
++..+..-|+++++.++..|..+++++.. ++ +. ...++.+..+|.+ ++.||.+|+.|++.+...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--- 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--- 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH---
Confidence 45677788888999999999999999973 22 11 2456788888886 789999999999999877666532
Q ss_pred cccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC----------------CCch
Q 008827 116 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD----------------PGRV 179 (552)
Q Consensus 116 ~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~----------------~~~v 179 (552)
+.++.+..++.|.++.|+..|+.+|..++..+++. . ..-...+|.++++|.+ ++..
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~--~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-L--AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-H--HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-H--HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 34556677889999999999999999988643210 0 1123567777776642 3455
Q ss_pred hchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcC----CCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHH
Q 008827 180 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG----SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV 255 (552)
Q Consensus 180 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv 255 (552)
+.....+|..+...++.... ..++.|..++... +....+...+++++..+.. ++..+. ..++.+.
T Consensus 251 q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a~~~L~ 319 (618)
T 1w63_A 251 QVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV-----LAINILG 319 (618)
T ss_dssp HHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-----HHHHHHH
Confidence 77788899998887765422 2334444444321 1124577788888888753 333222 4577888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827 256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 335 (552)
Q Consensus 256 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~ 335 (552)
.++.++++.+|+.++.+|..+....+. .+ ....+.++..+.+++..++..|...|..++.... .. .+
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~------~i 386 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTDHN-----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IR------GM 386 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHHHH-----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-TH------HH
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhCHH-----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HH------HH
Confidence 899999999999999999999875332 12 2456788999999999999999999999986432 21 24
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 415 (552)
Q Consensus 336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 415 (552)
++.|.+++.+.+.++|..++.+++.++....+. . .-.++.+++++++....+...+...+..+....|+...+
T Consensus 387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-~-----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~- 459 (618)
T 1w63_A 387 MKELLYFLDSCEPEFKADCASGIFLAAEKYAPS-K-----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY- 459 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC-H-----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc-H-----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-
Confidence 578888888899999999999999998743322 1 123677888887766667777777777777666654443
Q ss_pred HhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChh----hHH--HHHHHhhHhhhhhhHHHHHHhhc--CCChh
Q 008827 416 FAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKES----HKE--AVMDQLLLRAENKAQSCIIKFLQ--SNDSR 486 (552)
Q Consensus 416 ~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~----~~~--~i~~~~~~~~~~~~v~~Lv~lL~--~~~~~ 486 (552)
+++.+...+.+. ........++|+||.++..-.. ..+ .+. ...+++.|..+++ +.++.
T Consensus 460 ------~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~ 526 (618)
T 1w63_A 460 ------TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVT-------EDEVLDILESVLISNMSTSV 526 (618)
T ss_dssp ------HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCC-------HHHHHHHHHHHHHSTTCCHH
T ss_pred ------HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCC-------HHHHHHHHHHHHhccCCCHH
Confidence 344555666542 2344555799999988631000 000 000 0233455666665 46889
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 487 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 487 ~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
+|..+.+++..+.... +...+.. ...|....++.++|||+||...+.-+..
T Consensus 527 vr~~~lta~~Kl~~~~-~~~~~~l--------~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 527 TRGYALTAIMKLSTRF-TCTVNRI--------KKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHTTC-SSCHHHH--------HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC-cchHHHH--------HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999998621 1212221 2223444567889999999998877654
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.70 E-value=3.9e-15 Score=153.39 Aligned_cols=385 Identities=14% Similarity=0.126 Sum_probs=253.8
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc--CChhhHHHHHHHHHHHhhhCCC-------
Q 008827 84 SLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNASPC------- 154 (552)
Q Consensus 84 ~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~vr~~A~~~L~~l~~~~~~------- 154 (552)
.++..+..+|..|-..|..+...+ . .+.+..++..+.+ .++.+|..|+..|.++......
T Consensus 9 ~~~s~d~~~r~~Ae~~L~~~~~~~--~---------~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 9 KTVSPDRLELEAAQKFLERAAVEN--L---------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhC--h---------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 334446678888888887754321 0 2233445555554 3688999999999988643210
Q ss_pred ---cchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827 155 ---YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA 230 (552)
Q Consensus 155 ---~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a 230 (552)
...+.-....+-..|++.+. +++.+ ..++.+++.++....... .-.+.++.|++.+.++..++.+++.++.+
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 00111223445566777777 45678 889999999875421100 01356788888887751147899999999
Q ss_pred HHHhhcCC-hhHHHHHHhcccHHHHHHhcCCC--CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHH
Q 008827 231 LADMCSKL-ECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 307 (552)
Q Consensus 231 L~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 307 (552)
|+.++.+. +..-.. .-..+++.+..+++++ ++.+|..|++++.++...............-+++.+...+.+++++
T Consensus 154 l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 154 IGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHhCCchhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 99998632 111011 1124788899999988 7999999999999875321110000011112466777778889999
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh-----------------H
Q 008827 308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC-----------------K 370 (552)
Q Consensus 308 v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-----------------~ 370 (552)
++..++.+|..++...+......+..+.++.++..+++.++.+|..++.++..++... ... .
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-MDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH-HHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH-HHHHHhcccccccCCCccchh
Confidence 9999999999998755432112222267788888888999999999999998887531 000 0
Q ss_pred HHHHH---hhcHHHHHhhhcC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHH
Q 008827 371 EEIFM---ELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI 440 (552)
Q Consensus 371 ~~i~~---~~~~~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~ 440 (552)
..+.+ ...++.+++.+.+ +++.++..+..+|..++...++ .++.. +++.+...+.+ +++.++.
T Consensus 312 ~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~---~~~~l~~~l~~-~~~~~r~ 384 (462)
T 1ibr_B 312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPH---VLPFIKEHIKN-PDWRYRD 384 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHH---HHHHHHHHTTC-SSHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHH---HHHHHHHHhcC-CChHHHH
Confidence 00111 2345667666643 3457899999999998765432 22221 56777777777 8999999
Q ss_pred HHHHHHHhhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 441 QGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 441 ~a~~~L~~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.++++++.++.+.. ......+ ..++|.++..|.++++.+|..|+|+|++++.
T Consensus 385 aal~~l~~l~~~~~~~~~~~~l--------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLKPLV--------IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTT--------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999998654 2111122 4678999999999999999999999999984
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.68 E-value=1.1e-14 Score=139.69 Aligned_cols=257 Identities=16% Similarity=0.123 Sum_probs=197.1
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQ 198 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~ 198 (552)
...++.++..++++++.+|..|+.+|.++.. .+.++.|++++++ ++.++..|+++|+++........
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 4578899999999999999999999998752 3588999999985 46789999999998864332211
Q ss_pred HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827 199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 278 (552)
Q Consensus 199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~ 278 (552)
..++.|.+.+.+. .++.+|..++++|+.++..++.. ....++.++..++++++.+|..++.+|+.+..
T Consensus 90 ------~l~~~L~~~~~~d-~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 90 ------NVFNILNNMALND-KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp ------HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 1223333222222 35889999999999997533221 12468999999999999999999999976543
Q ss_pred ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827 279 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 358 (552)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL 358 (552)
.+.++.|+.++.++++.++..|+++|+++.... ..+++.|..+++++++.+|..++++|
T Consensus 158 ------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 ------------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 357899999999999999999999999885322 24678899999999999999999999
Q ss_pred HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhH
Q 008827 359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 438 (552)
Q Consensus 359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v 438 (552)
+++.. ...++.+..++.+++ ++..++.+|+.+.. +. +++.|..++.+++++++
T Consensus 217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~--~~-----------~~~~L~~~l~~~~~~~~ 269 (280)
T 1oyz_A 217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD--KT-----------LLPVLDTMLYKFDDNEI 269 (280)
T ss_dssp HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC--GG-----------GHHHHHHHHTTSSCCHH
T ss_pred HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc--hh-----------hhHHHHHHHhcCCCcHH
Confidence 99852 236788888888755 88899999998853 21 68888888877677777
Q ss_pred HHHHHHHHHh
Q 008827 439 EIQGMYVLGN 448 (552)
Q Consensus 439 ~~~a~~~L~~ 448 (552)
...+...|.+
T Consensus 270 ~~~~~~~l~~ 279 (280)
T 1oyz_A 270 ITSAIDKLKR 279 (280)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 7777766653
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.67 E-value=1.3e-14 Score=139.01 Aligned_cols=258 Identities=15% Similarity=0.106 Sum_probs=198.9
Q ss_pred HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc
Q 008827 202 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK 281 (552)
Q Consensus 202 ~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~ 281 (552)
...+.++.|++.|.++ ++.+|..|+++|+.+.. + +.++.++.+++++++.+|..++++|..+.....
T Consensus 20 ~~~~~i~~L~~~L~~~--~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDH--NSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHTSCHHHHHHHTTCS--SHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHhhHHHHHHHHHcC--CHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 3467899999999875 48899999999999862 2 358899999999999999999999988864311
Q ss_pred cccchhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 282 NLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 360 (552)
Q Consensus 282 ~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 360 (552)
. ...+++.|.. +++++++.++..|+++|+++....+... ...++.|..++.++++.+|..++++|++
T Consensus 87 ~-------~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 87 C-------EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp T-------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred c-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 1 0123344442 4578999999999999999874332211 2467899999999999999999999998
Q ss_pred hcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHH
Q 008827 361 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI 440 (552)
Q Consensus 361 l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~ 440 (552)
+.. ...++.|..++.++++.++..++++|+.+....+. +++.+...+.+ +++.++.
T Consensus 155 ~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-----------~~~~L~~~l~d-~~~~vR~ 210 (280)
T 1oyz_A 155 IND------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD-----------IRDCFVEMLQD-KNEEVRI 210 (280)
T ss_dssp C---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH-----------HHHHHHHHTTC-SCHHHHH
T ss_pred cCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH-----------HHHHHHHHhcC-CCHHHHH
Confidence 843 13688999999999999999999999998543332 57778888877 8899999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHH
Q 008827 441 QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS 520 (552)
Q Consensus 441 ~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~ 520 (552)
.++++|+++.. ...++.|...+++++ +|..|+++|+++.. ..+++
T Consensus 211 ~A~~aL~~~~~------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------~~~~~ 255 (280)
T 1oyz_A 211 EAIIGLSYRKD------------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------KTLLP 255 (280)
T ss_dssp HHHHHHHHTTC------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------GGGHH
T ss_pred HHHHHHHHhCC------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------hhhhH
Confidence 99999998852 244577888888755 89999999999873 14688
Q ss_pred HHHhhhcC-CCccHHHHHHHHHHH
Q 008827 521 HVKNMVND-PCLDVKLRVKTALEQ 543 (552)
Q Consensus 521 ~L~~ll~~-~~~~v~~~a~~al~~ 543 (552)
.|.+++++ +++++...+..+|.+
T Consensus 256 ~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 256 VLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCcHHHHHHHHHhhc
Confidence 89998864 456777776666654
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.64 E-value=5.9e-14 Score=144.57 Aligned_cols=388 Identities=13% Similarity=0.089 Sum_probs=260.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC---CCchhchHHHHHHHhhcCCHHHH--
Q 008827 124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD---PGRVGDEASFAFSSLIAEKEDMQ-- 198 (552)
Q Consensus 124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~---~~~v~~~a~~~L~~l~~~~~~~~-- 198 (552)
..++..+.+++..+|..|-..|..+.... ..+....|..++.+ +..+|..|+..|.++........
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 44566667889999999999988765410 24567777777763 34689999999998875431100
Q ss_pred ---HH--HH---H-hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC--CHHHHH
Q 008827 199 ---KL--AF---E-VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVRS 267 (552)
Q Consensus 199 ---~~--~~---~-~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~--~~~v~~ 267 (552)
.. .+ . ...-..|+..|.+++ +.+ ..+..+++.++...-.. . .-.+++|.+++.+.++ ++.+|.
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~--~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l~~~~~~~~~r~ 148 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTET--YRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANVTNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCC--SSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCCC--chh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHhccCCCCHHHHH
Confidence 00 00 0 111245677676653 456 77778888887532110 0 1135899999999988 899999
Q ss_pred HHHHHHHHhhccc-ccccchhhhccCcHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhHH-HHHhhCcHHHHHHhh
Q 008827 268 AACMCLRSVSRSI-KNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALGAISNIVVDFTTRRS-TFIRLGGVKLLVQLS 343 (552)
Q Consensus 268 ~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~-~~~~~g~i~~L~~ll 343 (552)
.++.++..++... +..-.. ....+++.++..++++ ++++|..|+.+++++......... .....-.++.+.+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 226 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCchhhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 9999999998653 111111 2245788889999887 799999999999997643322110 111112466777788
Q ss_pred cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCc--------------
Q 008827 344 KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI-------------- 409 (552)
Q Consensus 344 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-------------- 409 (552)
.++++.+|..+++++..++.......+. .+....++.++..+.+.+++++..++.++..++....
T Consensus 227 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 227 QCPDTRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTT-TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 8889999999999999987543211111 1111456677777889999999999999988875310
Q ss_pred -------chHHHHHhhcCchHHHHHHHhcc------cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHH
Q 008827 410 -------NSVEYIFAEDGIILDAVGRQLRI------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 476 (552)
Q Consensus 410 -------~~~~~i~~~~~~~~~~l~~~L~~------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~L 476 (552)
...+..+. .+++.+.+.|.. +.++.++..++.+|..++....+ .++ ..+++.+
T Consensus 306 ~~~~~~~~~~~~~~~---~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~--------~~~~~~l 371 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQ---YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV--------PHVLPFI 371 (462)
T ss_dssp CSSCCCCCHHHHHHH---HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH--------HHHHHHH
T ss_pred CccchhHHHHHHHhh---hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH--------HHHHHHH
Confidence 01111111 156666666643 13457899999999998864332 233 3566888
Q ss_pred HHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 477 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 477 v~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
...+++++..+|..|+.+++.++.... .+..... -..+++.+.+.++|+++.||..|.++|+++.+.
T Consensus 372 ~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 372 KEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999995211 1111111 146789999999999999999999999999875
No 59
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.58 E-value=4.2e-12 Score=134.67 Aligned_cols=402 Identities=15% Similarity=0.140 Sum_probs=270.1
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 114 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~ 114 (552)
.+....+.++.+++...+..+.-.+..+++.+.....+ ++..+.+-|++ ++-+|..|+.+|+++.. ++..+
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-- 145 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-- 145 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH--
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH--
Confidence 34577788888888888888888888888664432211 23444444555 67889999999999853 44432
Q ss_pred ccccCCccHHHHHHHH--hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhh
Q 008827 115 VGPDTGRTLSCIIEIV--KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLI 191 (552)
Q Consensus 115 ~~~~~~~~l~~l~~ll--~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~ 191 (552)
..++.+.+.+ .|.++.||..|+.++..++...++. +...++++.+.++|++ ++.|+..|..++..++
T Consensus 146 ------~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~----~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 146 ------AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL----VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp ------HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG----CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh----cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 3456788888 8999999999999999999976532 1124789999999985 4578888889999988
Q ss_pred cCCHHHHHHHHHhCcHHHHHHhh----hcCCC-----------ChhhHHHHHHHHHHhhcC-ChhHHHHHHhcccHHHHH
Q 008827 192 AEKEDMQKLAFEVNGVDKLYNHL----QKGSL-----------HPRRFEGILLALADMCSK-LECCRSRCLSLQVLKLVV 255 (552)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~L~~~L----~~~~~-----------~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~l~~lv 255 (552)
..++... ...+|.+++.| ..+.. +|-.+...+..|..++.. +++.+..+.+ .++.++
T Consensus 216 ~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il 288 (621)
T 2vgl_A 216 QKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL 288 (621)
T ss_dssp HHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred HhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence 7766421 12344444433 22211 355778888888888863 3454444332 344444
Q ss_pred HhcC---------CCCH--HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 008827 256 DALA---------HDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT 324 (552)
Q Consensus 256 ~~L~---------~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 324 (552)
..+. +.+. .|...++.++..+... +. ....++..|..+|.++++++|..|..+|..++...+
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~------~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~ 361 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PN------LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF 361 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HH------HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HH------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence 3321 2233 8888899998888532 11 123567889999999999999999999999987553
Q ss_pred hhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHH
Q 008827 325 TRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN 403 (552)
Q Consensus 325 ~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~ 403 (552)
. . .++ ....+.++..+. +++..+|..++..|..++.. .+-.. .+..+.+.+.+.|.+++..++..++.
T Consensus 362 ~-~-~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~ 430 (621)
T 2vgl_A 362 S-H-EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAI 430 (621)
T ss_dssp T-H-HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred c-H-HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 1 122 345677788888 89999999999999999752 23333 34566677777899999999999998
Q ss_pred hhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC
Q 008827 404 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 483 (552)
Q Consensus 404 l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~ 483 (552)
++..-+....+ +++.+.+++.. ....+...++..+..+....++.+...+ ..+...+.++
T Consensus 431 la~k~~~~~~~-------~v~~Ll~ll~~-~~~~v~~ev~~~l~~ii~~~~~~~~~~~------------~~l~~~l~~~ 490 (621)
T 2vgl_A 431 LAEKYAVDYTW-------YVDTILNLIRI-AGDYVSEEVWYRVIQIVINRDDVQGYAA------------KTVFEALQAP 490 (621)
T ss_dssp HHHHHCSSTHH-------HHHHHHHHHHH-HGGGSCSHHHHHHHHHHGGGCSCHHHHH------------HHHHHHHTSS
T ss_pred HHHhcCCcHHH-------HHHHHHHHHHh-hcccchHHHHHHHHHHHhCChhHHHHHH------------HHHHHHHcCc
Confidence 87542222222 46667777765 2333444555555555544444443333 4667777765
Q ss_pred C--hhHHHHHHHHHHhhcC
Q 008827 484 D--SRLRTAAVWAVLNLTC 500 (552)
Q Consensus 484 ~--~~~~~~a~~~l~~l~~ 500 (552)
. ..+...++|.++.++.
T Consensus 491 ~~~~~li~~~~wilGEy~~ 509 (621)
T 2vgl_A 491 ACHENLVKVGGYILGEFGN 509 (621)
T ss_dssp SCCHHHHHHHHHHHHHHTH
T ss_pred cchHHHHHHHHHHhcchHH
Confidence 4 3466678899999864
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.53 E-value=4.4e-13 Score=122.52 Aligned_cols=189 Identities=21% Similarity=0.196 Sum_probs=157.4
Q ss_pred ccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh
Q 008827 290 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 369 (552)
Q Consensus 290 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 369 (552)
+.+.++.|+.+|+++++.+|..|+.+|+.+.. .+.++.|++++.++++.+|..++++|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 45788999999999999999999999987643 3678999999999999999999999999843
Q ss_pred HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhh
Q 008827 370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNV 449 (552)
Q Consensus 370 ~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~l 449 (552)
...++.+.+++.++++.++..++++|+++... + .++.|...|.+ +++.++..++++|+++
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE--R-----------AVEPLIKALKD-EDWFVRIAAAFALGEI 139 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--H-----------HHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 13678899999999999999999999998532 1 57888888877 8999999999999998
Q ss_pred cCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827 450 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP 529 (552)
Q Consensus 450 a~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 529 (552)
.. ...++.|..+++++++.+|..|+.+|.++.. ..+++.|.++++|+
T Consensus 140 ~~------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~ 186 (211)
T 3ltm_A 140 GD------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETG 186 (211)
T ss_dssp CC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHC
T ss_pred CC------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCC
Confidence 42 2345788889999999999999999999973 12477888899889
Q ss_pred CccHHHHHHHHHHHHhhhc
Q 008827 530 CLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 530 ~~~v~~~a~~al~~~~~~~ 548 (552)
++.||..|..+|.++....
T Consensus 187 ~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 187 TGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp CHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHhcCCCC
Confidence 9999999999999876543
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.53 E-value=4.2e-13 Score=121.58 Aligned_cols=189 Identities=20% Similarity=0.181 Sum_probs=158.8
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 368 (552)
...+..+.++++|+++++.+|..|+.+|+.+.. .+.++.|++++.++++.+|..++++|+.+.. +
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---~- 75 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---E- 75 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G-
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---H-
Confidence 456778999999999999999999999987653 2578999999999999999999999999843 1
Q ss_pred hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHh
Q 008827 369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 448 (552)
Q Consensus 369 ~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~ 448 (552)
..++.+..++.++++.++..++++|+++... + .++.+...|.+ +++.++..++++|++
T Consensus 76 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 76 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE--R-----------AVEPLIKALKD-EDWFVRIAAAFALGE 133 (201)
T ss_dssp --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 3678899999999999999999999998532 1 57788888877 899999999999998
Q ss_pred hcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC
Q 008827 449 VATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND 528 (552)
Q Consensus 449 la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~ 528 (552)
+.. ...++.|..++.++++.+|..|+++|.++.. . .+++.|.++++|
T Consensus 134 ~~~------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------~---------~~~~~L~~~l~d 180 (201)
T 3ltj_A 134 IGD------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------E---------RVRAAMEKLAET 180 (201)
T ss_dssp HTC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------H---------HHHHHHHHHHHH
T ss_pred hCC------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------h---------hHHHHHHHHHhC
Confidence 853 2345788899999999999999999999962 1 247788888888
Q ss_pred CCccHHHHHHHHHHHHhhh
Q 008827 529 PCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 529 ~~~~v~~~a~~al~~~~~~ 547 (552)
+++.||..|..+|.++...
T Consensus 181 ~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 181 GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp CCHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 8999999999999987643
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.53 E-value=2e-11 Score=129.43 Aligned_cols=447 Identities=11% Similarity=0.076 Sum_probs=287.2
Q ss_pred chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhh--cC-CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827 37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL--GG-SLIQRDASLESIATIFKNNPEVVSQ 113 (552)
Q Consensus 37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL--~~-~~~v~~~al~~L~~l~~~~~~~~~~ 113 (552)
++..+..-|+++++.++..|..+++++.. ++. . ...++.+.++| .+ ++-||..|+.|+..+...+++...
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~----~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~- 184 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS-REM----A-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP- 184 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHH----H-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHH----H-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-
Confidence 34566677778888899999999999863 331 2 23567888888 55 789999999999999876665531
Q ss_pred hccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--------------CCch
Q 008827 114 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--------------PGRV 179 (552)
Q Consensus 114 ~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--------------~~~v 179 (552)
..+.++.+..++.|.++.|+..|+.++..++...+.... ......+..|-+++.. ++..
T Consensus 185 -----~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 185 -----MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp -----CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred -----chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 136788889999999999999999999999876432111 0112233333344321 2345
Q ss_pred hchHHHHHHHhhcC-CHHHHHHHHHhCcHHHHHHhhhcCCC---------ChhhHHHHHHHHHHhhcCChhHHHHHHhcc
Q 008827 180 GDEASFAFSSLIAE-KEDMQKLAFEVNGVDKLYNHLQKGSL---------HPRRFEGILLALADMCSKLECCRSRCLSLQ 249 (552)
Q Consensus 180 ~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~---------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~ 249 (552)
+......+..+... ++.....+.+ .++.+++.+.+... ...+...++.++..+.. +++.+. .
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~ 329 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----R 329 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----H
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----H
Confidence 67777777777753 4554433333 34444433322110 12566677788888753 333332 3
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRS 328 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~ 328 (552)
.++.+..++.++++.+|+.++..|..+....+.. . ++ ....+.++..|. ++|..++..|...|..++.. .+.
T Consensus 330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv- 402 (621)
T 2vgl_A 330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNA- 402 (621)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHH-
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhH-
Confidence 5677889999999999999999999997653211 1 22 356677888888 99999999999999999843 222
Q ss_pred HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
..++..|.+++...+.+++..++.+++.++..-.+.. .-.++.+++++......+...+...+..+....
T Consensus 403 ----~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 403 ----QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp ----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 2456778888888899999999999998875322111 124667777776555556666666777776665
Q ss_pred cchHHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhH
Q 008827 409 INSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487 (552)
Q Consensus 409 ~~~~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~ 487 (552)
++...+. +..+...+... ....+...++|++|..+..-+.. ..+. | ...+..+..-+...++.+
T Consensus 473 ~~~~~~~-------~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-~~~~----p---~~~l~~l~~~~~~~~~~v 537 (621)
T 2vgl_A 473 DDVQGYA-------AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD-PRSS----P---LIQFNLLHSKFHLCSVPT 537 (621)
T ss_dssp CSCHHHH-------HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-TTSC----H---HHHHHHHHHHHTTSCHHH
T ss_pred hhHHHHH-------HHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc-CCCC----H---HHHHHHHHHHhccCCHHH
Confidence 5544443 34455556552 23356677889999875311000 0000 0 123345555566778899
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc--CCCccHHHHHHHHHHHHhh
Q 008827 488 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 488 ~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~al~~~~~ 546 (552)
|..+..++..+... .++.... +...|..... |.++|+|+||.....-+..
T Consensus 538 ~~~~Lta~~Kl~~~----~p~~~~~-----i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 538 RALLLSTYIKFVNL----FPEVKAT-----IQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHHHHHHHH----CGGGHHH-----HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH----ChHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 99999999988741 1111111 1222222334 7899999999888776653
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.52 E-value=1.5e-12 Score=117.95 Aligned_cols=184 Identities=21% Similarity=0.218 Sum_probs=156.8
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 328 (552)
Q Consensus 249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 328 (552)
+..+.++++|+++++.+|..|+.+|..+.. .+.++.|+.+|.++++.++..|+.+|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 578999999999999999999999976543 2567899999999999999999999988742
Q ss_pred HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
.+.++.|+.++.++++.+|..++++|+++.. + ..++.+..++.++++.++..++++|+++...
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~- 137 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE- 137 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-
Confidence 2578899999999999999999999999843 1 3678889999999999999999999998532
Q ss_pred cchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHH
Q 008827 409 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 488 (552)
Q Consensus 409 ~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~ 488 (552)
. .++.|..++.+ +++.++..++++|+.+.. ..+++.|..+++++++.+|
T Consensus 138 -~-----------~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~------------------~~~~~~L~~~l~d~~~~vr 186 (201)
T 3ltj_A 138 -R-----------AVEPLIKALKD-EDGWVRQSAADALGEIGG------------------ERVRAAMEKLAETGTGFAR 186 (201)
T ss_dssp -G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHHCS------------------HHHHHHHHHHHHHCCHHHH
T ss_pred -H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------hhHHHHHHHHHhCCCHHHH
Confidence 1 67888888887 889999999999999842 2334678888899999999
Q ss_pred HHHHHHHHhhc
Q 008827 489 TAAVWAVLNLT 499 (552)
Q Consensus 489 ~~a~~~l~~l~ 499 (552)
..|..+|.++.
T Consensus 187 ~~A~~aL~~l~ 197 (201)
T 3ltj_A 187 KVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 64
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.52 E-value=1.7e-12 Score=118.63 Aligned_cols=186 Identities=22% Similarity=0.210 Sum_probs=156.6
Q ss_pred cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827 248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 327 (552)
Q Consensus 248 ~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 327 (552)
.+.++.++..|+++++.+|..++..|..+.. ...++.|+.+|.++++.++..|+++|+++..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 3579999999999999999999999976532 3568999999999999999999999998752
Q ss_pred HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 328 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 328 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
.+.++.|++++.++++.+|..++++|+.+.. ...++.|.+++.++++.++..++++|+++..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 3578899999999999999999999999843 1367889999999999999999999999843
Q ss_pred CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhH
Q 008827 408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487 (552)
Q Consensus 408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~ 487 (552)
++ .++.|..++.+ +++.++..++.+|+.+.. ..+++.|..+++++++.+
T Consensus 142 -~~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~------------------~~~~~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 142 -ER-----------AVEPLIKALKD-EDGWVRQSAADALGEIGG------------------ERVRAAMEKLAETGTGFA 190 (211)
T ss_dssp -GG-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHHCS------------------HHHHHHHHHHHHHCCHHH
T ss_pred -HH-----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------hhHHHHHHHHHhCCCHHH
Confidence 21 57888888877 889999999999999853 233467888899999999
Q ss_pred HHHHHHHHHhhcC
Q 008827 488 RTAAVWAVLNLTC 500 (552)
Q Consensus 488 ~~~a~~~l~~l~~ 500 (552)
|..|..+|.++..
T Consensus 191 r~~A~~aL~~~~~ 203 (211)
T 3ltm_A 191 RKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999985
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.28 E-value=5.3e-08 Score=104.61 Aligned_cols=218 Identities=13% Similarity=0.153 Sum_probs=148.1
Q ss_pred ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH-HhhcC-CHHHHHHHHHHHHHHhcC-Chhhh
Q 008827 35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT-SLLGG-SLIQRDASLESIATIFKN-NPEVV 111 (552)
Q Consensus 35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~-~lL~~-~~~v~~~al~~L~~l~~~-~~~~~ 111 (552)
...+.+++..|+|+++..|..|+.+|.+++.++..+..+.+.|+|.+++ .+|.+ +..||..|..+|++|+.+ ..+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3456678888999999999999999999999888898899999888765 45665 779999999999999865 45555
Q ss_pred hhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhh
Q 008827 112 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLI 191 (552)
Q Consensus 112 ~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~ 191 (552)
..+.+ .+.++++..+++..... +. ................+.. +...+..+|.+|+
T Consensus 113 ~~l~~---~~il~~L~~~l~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~----------~~~~~l~lL~~L~ 168 (684)
T 4gmo_A 113 VHLYR---LDVLTAIEHAAKAVLET--------LT---TSEPPFSKLLKAQQRLVWD----------ITGSLLVLIGLLA 168 (684)
T ss_dssp HHHHH---TTHHHHHHHHHHHHHHH--------HH---CBTTBGGGSCHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred HHHHH---cChHHHHHHHHHhhHHH--------Hh---hhccccccccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 44443 56788888877631111 11 1110000000001111111 1234556677777
Q ss_pred cCCHHHHHHHHHhCcHHHHHHhhhcCC-CChhhHHHHHHHHHHhhcCChhHHHHHHhcccH---HHHHHhcCCCCHHHHH
Q 008827 192 AEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQVL---KLVVDALAHDSSDVRS 267 (552)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l---~~lv~~L~~~~~~v~~ 267 (552)
..+......+...++++.|+..|.+.+ ....++..++.+|..++.+++.....+.+.+.. ..+..+.++ +...+.
T Consensus 169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~ 247 (684)
T 4gmo_A 169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAV 247 (684)
T ss_dssp HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHH
T ss_pred hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHH
Confidence 777776667778889999999885432 345789999999999999888888888776643 333333333 334567
Q ss_pred HHHHHHHHhh
Q 008827 268 AACMCLRSVS 277 (552)
Q Consensus 268 ~a~~~L~~ls 277 (552)
.+++.|.|+.
T Consensus 248 la~giL~Ni~ 257 (684)
T 4gmo_A 248 MACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHh
Confidence 7888888874
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.03 E-value=1.3e-09 Score=117.22 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=150.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHH-HhhcCCCHHHHHHHHHHHHHhcccCChHhHHH
Q 008827 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV-QLSKSMDSTIRLNALRALRNLIFLAEDKCKEE 372 (552)
Q Consensus 294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 372 (552)
+.|+++.|++++++.|..|+++|+|++. .+..++.+...|++..++ .++.+++..+|.+|+++|.||+...+++....
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 4567788999999999999999999996 466677888888887765 57889999999999999999998777888899
Q ss_pred HHHhhcHHHHHhhhcCCC---------------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc
Q 008827 373 IFMELTASLLASLICDPE---------------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR 431 (552)
Q Consensus 373 i~~~~~~~~l~~ll~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~ 431 (552)
++..++++.|..+++... .++..+++.+|++++.+..+..+.+...+ .++.++..|.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~--~l~~l~~~L~ 192 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQ--TILRLLFRLI 192 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCH--HHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcc--cHHHHHHHHH
Confidence 999999999988874211 24556788999999988877777777766 5677776664
Q ss_pred cc--CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhh---hHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 432 IA--SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK---AQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 432 ~~--~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~---~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
+. ...+++..++.+|..++..+....+.+.+ .+ ....+..+.. .+...+..+++.+.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-------~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-------DQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-------CCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-------cchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence 32 23579999999999999988876666654 33 2233333333 34456778888988874
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.95 E-value=5.5e-07 Score=96.79 Aligned_cols=309 Identities=12% Similarity=0.058 Sum_probs=203.1
Q ss_pred HHHHHHHhcC----CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCC------ChhhHHHHHHHHHHh
Q 008827 165 LINNLLELLD----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL------HPRRFEGILLALADM 234 (552)
Q Consensus 165 ~i~~Lv~ll~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~------~~~~~~~a~~aL~~l 234 (552)
++..|-+.|. +++.++.-|+.+|+.+..+... ..+..|...|.+.+. .+.++..|...|+-.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4566666664 1234566677777766544321 135566676765420 256788888888876
Q ss_pred hcC--ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh-cCCCHHHHHH
Q 008827 235 CSK--LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVA 311 (552)
Q Consensus 235 ~~~--~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~ 311 (552)
... +++ +++.|.+.+.+++..++..|+.+++.+-... ....++..|++.+ .+.+..++..
T Consensus 465 ~~GS~~ee---------v~e~L~~~L~dd~~~~~~~AalALGli~vGT--------gn~~ai~~LL~~~~e~~~e~vrR~ 527 (963)
T 4ady_A 465 AMGSANIE---------VYEALKEVLYNDSATSGEAAALGMGLCMLGT--------GKPEAIHDMFTYSQETQHGNITRG 527 (963)
T ss_dssp STTCCCHH---------HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC--------CCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred hcCCCCHH---------HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc--------CCHHHHHHHHHHHhccCcHHHHHH
Confidence 432 232 4777888888888777878887877653221 1224566777765 4668899999
Q ss_pred HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh-cCC
Q 008827 312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDP 389 (552)
Q Consensus 312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll-~~~ 389 (552)
++.+|+.+..+.+ ..++.+++.+. +.++.+|..++.+++.-..+... ...++.|++.+ .+.
T Consensus 528 aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--------~~aIq~LL~~~~~d~ 590 (963)
T 4ady_A 528 LAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--------NSAVKRLLHVAVSDS 590 (963)
T ss_dssp HHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--------HHHHHHHHHHHHHCS
T ss_pred HHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHhccCC
Confidence 9999998876544 35566666655 57889999999888754333331 12344444443 577
Q ss_pred ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhh
Q 008827 390 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE 469 (552)
Q Consensus 390 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~ 469 (552)
+..++..|+..|+.+..+.++. ++.+..+|..+.++.+|..++++|+.+..|++. .
T Consensus 591 ~d~VRraAViaLGlI~~g~~e~-----------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~----------- 646 (963)
T 4ady_A 591 NDDVRRAAVIALGFVLLRDYTT-----------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q----------- 646 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSCSS-----------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----------
T ss_pred cHHHHHHHHHHHHhhccCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----------
Confidence 8889999999999998777653 334444455558999999999999999988762 2
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC--CCccHHHHHHHHHHHHh
Q 008827 470 NKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND--PCLDVKLRVKTALEQFN 545 (552)
Q Consensus 470 ~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~a~~al~~~~ 545 (552)
.++..|..++++.|..||.+|+.+++.+.....+....+...+ +..|.+...+ .++..+.-|..|.+.+-
T Consensus 647 -~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~-----l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 647 -SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI-----NKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp -HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH-----HHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 2335778888999999999999999999852111111133333 4456666654 34557777777777654
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.93 E-value=4.3e-07 Score=76.33 Aligned_cols=218 Identities=18% Similarity=0.168 Sum_probs=164.5
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCCh
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED 367 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~ 367 (552)
.+..++..++++|.|.-+.++.+|...+.+++...++... ..+..|+-+++ ++..........+++.++.-. |
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H
Confidence 5677889999999999999999999999999988876553 34566777654 566667677788888887633 3
Q ss_pred HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827 368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG 447 (552)
Q Consensus 368 ~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~ 447 (552)
+++. ..+|.++.-.+-.++.++-+...+|..+...+|.....+++ -+..++.+ ++..-+..++..++
T Consensus 103 ----e~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r-------di~smlts-kd~~Dkl~aLnFi~ 169 (253)
T 2db0_A 103 ----ELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR-------DFMSMLSS-KNREDKLTALNFIE 169 (253)
T ss_dssp ----HHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-------HHHHHTSC-SSHHHHHHHHHHHH
T ss_pred ----HHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH-------HHHHHhcC-CChHHHHHHHHHHH
Confidence 2222 35777887788889999999999999999988876555544 34456665 88888888888888
Q ss_pred hhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc
Q 008827 448 NVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN 527 (552)
Q Consensus 448 ~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~ 527 (552)
.+..... +.+ ..++|.|..+|.+.|.-||..|+.+|.+++.. . ...+.. ++..+ +-++
T Consensus 170 alGen~~---~yv---------~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~----n-pklRki----i~~kl-~e~~ 227 (253)
T 2db0_A 170 AMGENSF---KYV---------NPFLPRIINLLHDGDEIVRASAVEALVHLATL----N-DKLRKV----VIKRL-EELN 227 (253)
T ss_dssp TCCTTTH---HHH---------GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS----C-HHHHHH----HHHHH-HHCC
T ss_pred HHhccCc---ccc---------CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc----C-HHHHHH----HHHHH-HHhc
Confidence 8876433 222 46789999999999999999999999999952 2 222232 12333 3347
Q ss_pred CCCccHHHHHHHHHHHHhhh
Q 008827 528 DPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 528 ~~~~~v~~~a~~al~~~~~~ 547 (552)
|++..|+..+..+|..+.-.
T Consensus 228 D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 228 DTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 88999999999999987643
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.93 E-value=3.6e-07 Score=98.22 Aligned_cols=302 Identities=18% Similarity=0.153 Sum_probs=199.5
Q ss_pred hHHHHHhhc---C-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCC--------hhhHHHHHHHHH
Q 008827 79 LKRLTSLLG---G-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRF--------ARTRLLASLCLI 146 (552)
Q Consensus 79 i~~L~~lL~---~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~--------~~vr~~A~~~L~ 146 (552)
+..|-..|. + ++.++.-|+.+||.+.....+ ..+..|...+.+++ +.+|..|+..|.
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----------HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 444555554 2 456777888888886544311 12344455555444 778888888888
Q ss_pred HHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhh--cCCHHHHHHHHHhCcHHHHHHhhhcCCCChhh
Q 008827 147 VIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLI--AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRR 223 (552)
Q Consensus 147 ~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~ 223 (552)
..+..... ..+++.|.+++.++ ..++..|+.+|+-+. +.+.. .+..|+..+.+. .+..+
T Consensus 463 la~~GS~~--------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~---------ai~~LL~~~~e~-~~e~v 524 (963)
T 4ady_A 463 LAAMGSAN--------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE---------AIHDMFTYSQET-QHGNI 524 (963)
T ss_dssp HHSTTCCC--------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH---------HHHHHHHHHHHC-SCHHH
T ss_pred HHhcCCCC--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH---------HHHHHHHHHhcc-CcHHH
Confidence 75442211 34677788888644 345667777777552 33322 355666665544 35678
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh-
Q 008827 224 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL- 301 (552)
Q Consensus 224 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL- 301 (552)
+..++.+|+-+...+++ .++.+++.|. +.++-+|..++.+++--.-.. .....++.|++.+
T Consensus 525 rR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGT--------Gn~~aIq~LL~~~~ 587 (963)
T 4ady_A 525 TRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGT--------GNNSAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS--------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHhc
Confidence 88899999987655443 4667777776 678999999988876432221 2234567777766
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHH
Q 008827 302 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS 380 (552)
Q Consensus 302 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~ 380 (552)
.+.+..+|..|+.+|+.+..+.+ ..++.+++ ++++.++.+|..+.+||+.++.+.+. ..+++
T Consensus 588 ~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--------~~aid 650 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--------QSAID 650 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--------HHHHH
T ss_pred cCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--------HHHHH
Confidence 47788999999999998876543 35667776 55678999999999999999764431 22566
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhcCCcch----HHHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHhhc
Q 008827 381 LLASLICDPEPSVQEQALALVRNLVDGRINS----VEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVA 450 (552)
Q Consensus 381 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~la 450 (552)
.|..++.+++..|+..|+.+|+.+..+.++. +.. ....|.+.+.+ +.++..+-.+..+.+-+-
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-------~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD-------INKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH-------HHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHH-------HHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 7888889999999999999999998775443 222 23444454443 245667777777666543
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=1.2e-07 Score=88.06 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=141.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRST 329 (552)
Q Consensus 251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~ 329 (552)
-+.+.+.+++.+|..|..++..|..+....+..... .-..+++.|...+. +++..++..|+.+++.++.........
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345788889999999999999999997653222212 12366888888995 999999999999999998643322112
Q ss_pred HHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC-
Q 008827 330 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR- 408 (552)
Q Consensus 330 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~- 408 (552)
. -...++.++..+.+.+..+|..+..+|.+++...+. ...++.+...+.+.++.++..++..|..+....
T Consensus 95 ~-~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 Y-ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp H-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1 235889999999999999999999999999764431 135677888899999999999999999976543
Q ss_pred cch-HHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827 409 INS-VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 451 (552)
Q Consensus 409 ~~~-~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~ 451 (552)
++. ....+.. +++.+...|++ ++++++..|..+++.++.
T Consensus 166 ~~~~~~~~l~~---l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTALNKKLLKL---LTTSLVKTLNE-PDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGCCHHHHHH---HHHHHHHHHTS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHH---HHHHHHHHhcC-CChHHHHHHHHHHHHHHH
Confidence 331 1222221 78899999987 899999999999998774
No 71
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.82 E-value=2.6e-05 Score=87.52 Aligned_cols=505 Identities=11% Similarity=0.048 Sum_probs=261.9
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCC--cccccc---cch-HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchH
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPK--YDFLQE---ENM-EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLK 80 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~--~~~~~~---~~i-~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~ 80 (552)
+..+...|+..|++.....-... ...+++ ..| ..++..+.+++..++..++.+++.+++.+-...+ -+.++
T Consensus 50 ~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W---p~ll~ 126 (960)
T 1wa5_C 50 PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW---PTLLS 126 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC---TTHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch---hHHHH
Confidence 45666777888887754321110 011211 122 3466666555678888999999888642110000 12456
Q ss_pred HHHHhhcC-CHHHHHHHHHHHHHHhcCCh------hhhhhhccccCCccHHHHHH-------HHhcCCh---------hh
Q 008827 81 RLTSLLGG-SLIQRDASLESIATIFKNNP------EVVSQFVGPDTGRTLSCIIE-------IVKDRFA---------RT 137 (552)
Q Consensus 81 ~L~~lL~~-~~~v~~~al~~L~~l~~~~~------~~~~~~~~~~~~~~l~~l~~-------ll~~~~~---------~v 137 (552)
.|++.+++ +...+..++.+|..+++... +....+... -....+.++. .+++... .+
T Consensus 127 ~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~-l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~ 205 (960)
T 1wa5_C 127 DLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLV-LDVFTAPFLNLLKTVDEQITANENNKASLNILFDV 205 (960)
T ss_dssp HHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 77777765 45677889999999986431 111111000 0112232322 2343322 22
Q ss_pred HHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC----------C------chhchHHHHHHHhhcCCHHHHHHH
Q 008827 138 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP----------G------RVGDEASFAFSSLIAEKEDMQKLA 201 (552)
Q Consensus 138 r~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~----------~------~v~~~a~~~L~~l~~~~~~~~~~~ 201 (552)
...+.++++.+....-...... .-...++.+.+++... . .++..++.++..+....+..-..
T Consensus 206 ~~~~~k~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~- 283 (960)
T 1wa5_C 206 LLVLIKLYYDFNCQDIPEFFED-NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP- 283 (960)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHH-THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred HHHHHHHHHHHhhccchHHHHH-HHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2335666665543221111100 1134566667766421 0 13556677777776554432111
Q ss_pred HHhCcHHHHHHhhhc---CCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHH-----HHHhcC--------------
Q 008827 202 FEVNGVDKLYNHLQK---GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKL-----VVDALA-------------- 259 (552)
Q Consensus 202 ~~~~~i~~L~~~L~~---~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~-----lv~~L~-------------- 259 (552)
+-...++...+.+.+ ...+..++..++..+..++.. +..+..+...+.++. ++..+.
T Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~ 362 (960)
T 1wa5_C 284 MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPI 362 (960)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHH
Confidence 112234444554532 223466788888888887742 333322211122333 333331
Q ss_pred ---------CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCCc
Q 008827 260 ---------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFT 324 (552)
Q Consensus 260 ---------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~ 324 (552)
+.....|.+|..+|..++...+. .+-..+++.+.+.+. ++++..+++|..+++.++.+..
T Consensus 363 e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~-----~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 363 EYIRRDLEGSDTDTRRRACTDFLKELKEKNEV-----LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp HHHHHHHHC----CHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred HHHHhccCcccccCcHHHHHHHHHHHHHHcch-----hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 11235788999999998876321 122233444444454 5678899999999999975321
Q ss_pred --h----------hHHHHHhhCcHHHHHHhhcCC---CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCC
Q 008827 325 --T----------RRSTFIRLGGVKLLVQLSKSM---DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP 389 (552)
Q Consensus 325 --~----------~~~~~~~~g~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~ 389 (552)
. .-..++. ..++..+.++ ++.+|..++|+++.++....++. -...++.+++.+.++
T Consensus 438 ~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~-----l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 438 ITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ-----LIELMPILATFLQTD 508 (960)
T ss_dssp CBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH-----HHHHHHHHHHHTTCS
T ss_pred cccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHhCCC
Confidence 0 0111111 1223334555 88999999999999987653321 233567788888888
Q ss_pred ChhHHHHHHHHHHHhhcCCc-----------chHHHHHhhcCchHHHHHHHhcccC----chhHHHHHHHHHHhhcCCCh
Q 008827 390 EPSVQEQALALVRNLVDGRI-----------NSVEYIFAEDGIILDAVGRQLRIAS----KAEIEIQGMYVLGNVATGKE 454 (552)
Q Consensus 390 ~~~v~~~a~~~L~~l~~~~~-----------~~~~~i~~~~~~~~~~l~~~L~~~~----~~~v~~~a~~~L~~la~~~~ 454 (552)
++.|+..|+++|.+++.... +.+...+. .+++.|..+++..+ +....+.++.+|+.++....
T Consensus 509 ~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~---~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 509 EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE---ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH---HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH---HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 89999999999999987421 11111111 15666666666521 11133455555555443111
Q ss_pred hhHHHHHHHhhHhhhhhhHHHHHHhh----cC-CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827 455 SHKEAVMDQLLLRAENKAQSCIIKFL----QS-NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP 529 (552)
Q Consensus 455 ~~~~~i~~~~~~~~~~~~v~~Lv~lL----~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 529 (552)
+.....+ ..+++.|...+ ++ .+...+..+..+|+.++.. ..++....+ +..+.+.+..+++..
T Consensus 586 ~~~~p~~--------~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~---~~~~~~~~~-~~~~~p~~~~iL~~~ 653 (960)
T 1wa5_C 586 DSIQPLF--------PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY---TQRQNLPLL-VDSMMPTFLTVFSED 653 (960)
T ss_dssp TTTGGGH--------HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT---SCGGGHHHH-HHHHHHHHHHHHHTT
T ss_pred HhhhhHH--------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc---CCcchHHHH-HHHHHHHHHHHHHhh
Confidence 1111111 12223333333 33 3566777788888888752 112222222 344567888877655
Q ss_pred CccHHHHHHHHHHHHhhh
Q 008827 530 CLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 530 ~~~v~~~a~~al~~~~~~ 547 (552)
..+..+.+...+..+.+.
T Consensus 654 ~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 654 IQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp CTTTHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHh
Confidence 556666666666655544
No 72
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.80 E-value=6.2e-06 Score=92.52 Aligned_cols=388 Identities=11% Similarity=0.064 Sum_probs=213.8
Q ss_pred cHHHHHHHHhc--CChhhHHHHHHHHHHHhhhCCC-----cchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcC
Q 008827 122 TLSCIIEIVKD--RFARTRLLASLCLIVIRNASPC-----YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAE 193 (552)
Q Consensus 122 ~l~~l~~ll~~--~~~~vr~~A~~~L~~l~~~~~~-----~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~ 193 (552)
....++..+.+ .+..+|..|+-.|.|.....-. ..........+=..+++.+. ++..++..++.+++.++..
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~ 115 (960)
T 1wa5_C 36 FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS 115 (960)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 34455665533 4679999999999998754211 01111112222333344333 4567888999999888753
Q ss_pred C-HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC------hhHHHHHH--hcccHHHHHH-------h
Q 008827 194 K-EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL------ECCRSRCL--SLQVLKLVVD-------A 257 (552)
Q Consensus 194 ~-~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~------~~~~~~~~--~~~~l~~lv~-------~ 257 (552)
+ +. +. .+.++.|++.+.++ ++..++.++.++..++... ++.+..+. -....+.+++ .
T Consensus 116 d~p~-~W----p~ll~~L~~~l~s~--~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~ 188 (960)
T 1wa5_C 116 DFPD-RW----PTLLSDLASRLSND--DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQ 188 (960)
T ss_dssp HSTT-TC----TTHHHHHHTTCCSS--CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcc-ch----hHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 10 00 35577888877665 3667899999999998632 12222221 1122333333 3
Q ss_pred cCCCCH---------HHHHHHHHHHHHhhcccccccchhhhc--cCcHHHHHHhhcCC------C---------HHHHHH
Q 008827 258 LAHDSS---------DVRSAACMCLRSVSRSIKNLSAGSFMN--ETIVIPLVRLLDDT------S---------TAVQVA 311 (552)
Q Consensus 258 L~~~~~---------~v~~~a~~~L~~ls~~~~~~~~~~~~~--~~~i~~Lv~lL~~~------~---------~~v~~~ 311 (552)
+++... .+...+++++++++... .... +.+ ...++.+.+++... + ..++..
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~ 265 (960)
T 1wa5_C 189 ITANENNKASLNILFDVLLVLIKLYYDFNCQD--IPEF-FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSS 265 (960)
T ss_dssp TTCCC--CHHHHHHHHHHHHHHHHHHHHHSSC--CCHH-HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc--chHH-HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHH
Confidence 554321 33344667777665321 1111 111 23445556665321 1 257788
Q ss_pred HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-----CCCHHHHHHHHHHHHHhcccCChHhHH-----HHHHhhcHHH
Q 008827 312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-----SMDSTIRLNALRALRNLIFLAEDKCKE-----EIFMELTASL 381 (552)
Q Consensus 312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~-----~i~~~~~~~~ 381 (552)
++.++..++..++..-.... ...++..++.+. ..++.++..++..+..++.. +..+. ..+....-..
T Consensus 266 ~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~--~~~~~~~~~~~~l~~li~~~ 342 (960)
T 1wa5_C 266 IQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI--PKYFEIFNNESAMNNITEQI 342 (960)
T ss_dssp HHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS--HHHHGGGCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc--HhHHHHHcCchHHHHHHHHH
Confidence 88888887765543221111 234555555553 34678899999999887652 11111 1111111122
Q ss_pred HHhhhc---------CCC--------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-----c
Q 008827 382 LASLIC---------DPE--------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-----A 433 (552)
Q Consensus 382 l~~ll~---------~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-----~ 433 (552)
++..+. ++| ...+..|..+|..++...++ .++.. +++.+.+.+.. +
T Consensus 343 i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~~~---~l~~i~~~l~~~~~~~~ 416 (960)
T 1wa5_C 343 ILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVTNI---FLAHMKGFVDQYMSDPS 416 (960)
T ss_dssp HHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHHHH---HHHHHHHHHHHHHC---
T ss_pred hHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHHHH---HHHHHHHHHHHhccCcc
Confidence 223321 011 13455666677666654321 12211 34555555551 3
Q ss_pred CchhHHHHHHHHHHhhcCCC--hh----------hHHHHHHHhhHhhhhhhHHHHHHhhcCC---ChhHHHHHHHHHHhh
Q 008827 434 SKAEIEIQGMYVLGNVATGK--ES----------HKEAVMDQLLLRAENKAQSCIIKFLQSN---DSRLRTAAVWAVLNL 498 (552)
Q Consensus 434 ~~~~v~~~a~~~L~~la~~~--~~----------~~~~i~~~~~~~~~~~~v~~Lv~lL~~~---~~~~~~~a~~~l~~l 498 (552)
+++..++.|+.+++.++.+. .. ....++ ...+...|+++ ++.+|..|+|+++.+
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l-----------~~~v~p~l~~~~~~~p~vr~~a~~~lg~~ 485 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF-----------TKEIAPDLTSNNIPHIILRVDAIKYIYTF 485 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH-----------HHHTHHHHHCSSCSCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH-----------HHHhHHHhcCCCCCCceehHHHHHHHHHH
Confidence 67789999999999998532 10 111121 12344455666 889999999999999
Q ss_pred cCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 499 TCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 499 ~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
+.. -.++.. ..+++.+.+.+.|+++.|+..|++||.+|.+.
T Consensus 486 ~~~---~~~~~l-----~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 486 RNQ---LTKAQL-----IELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp GGG---SCHHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred Hhh---CCHHHH-----HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 841 122222 23467778878887888999999999998874
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.79 E-value=2.7e-06 Score=71.60 Aligned_cols=216 Identities=14% Similarity=0.148 Sum_probs=164.8
Q ss_pred hcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch
Q 008827 247 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT 325 (552)
Q Consensus 247 ~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~ 325 (552)
+..++..++.+|.++-|.|+++|...+..++...+.+. ...+..|+.+++ ++.-..-.+.+.+++.++...+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~------epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH------HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 44578999999999999999999999999988755432 244566777765 56666667788899988876554
Q ss_pred hHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 326 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 326 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
.. .+.+|.+..-..-+++.+|.+...+|..++.. .|+.-. ++..-+..++.++|..-+..|+.++.-+.
T Consensus 104 ~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 104 LV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 22 36788888888888999999999999999874 343332 34456777888998777777777777776
Q ss_pred cCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh
Q 008827 406 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 485 (552)
Q Consensus 406 ~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~ 485 (552)
.+. ..++.- .++.+..+|.+ .+.-|+.++.-+|++++..+++.|..+.. -+.-+.+++.
T Consensus 173 en~---~~yv~P----fLprL~aLL~D-~deiVRaSaVEtL~~lA~~npklRkii~~-------------kl~e~~D~S~ 231 (253)
T 2db0_A 173 ENS---FKYVNP----FLPRIINLLHD-GDEIVRASAVEALVHLATLNDKLRKVVIK-------------RLEELNDTSS 231 (253)
T ss_dssp TTT---HHHHGG----GHHHHHGGGGC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------------HHHHCCCSCH
T ss_pred ccC---ccccCc----chHHHHHHHcC-cchhhhHHHHHHHHHHHHcCHHHHHHHHH-------------HHHHhcCcHH
Confidence 554 445444 57888888887 88899999999999999988876654442 3455678888
Q ss_pred hHHHHHHHHHHhhcC
Q 008827 486 RLRTAAVWAVLNLTC 500 (552)
Q Consensus 486 ~~~~~a~~~l~~l~~ 500 (552)
.+++.....|+.++.
T Consensus 232 lv~~~V~egL~rl~l 246 (253)
T 2db0_A 232 LVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999888988874
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.77 E-value=7.6e-07 Score=78.32 Aligned_cols=187 Identities=18% Similarity=0.197 Sum_probs=145.1
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHH
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 413 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 413 (552)
+.+..|.+++++.|+.++.+++.++..+....+...+...++. .++.+++++.+.|..+.-.|+.+++.+..+-|-.-+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 5778899999999999999999999999876554455555544 689999999999999999999999999988654434
Q ss_pred HHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHH
Q 008827 414 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW 493 (552)
Q Consensus 414 ~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~ 493 (552)
.... +...+..++.+ +++-.+..++-.++.+-..+. . ..++..+.+++.|.|..++..|..
T Consensus 112 ~y~K----l~~aL~dlik~-~~~il~~eaae~Lgklkv~~~--~------------~~V~~~l~sLl~Skd~~vK~agl~ 172 (265)
T 3b2a_A 112 TFLK----AAKTLVSLLES-PDDMMRIETIDVLSKLQPLED--S------------KLVRTYINELVVSPDLYTKVAGFC 172 (265)
T ss_dssp HHHH----HHHHHHHHTTS-CCHHHHHHHHHHHHHCCBSCC--C------------HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHH----HHHHHHHHhcC-CCchHHHHHHHHhCcCCcccc--h------------HHHHHHHHHHHhCCChhHHHHHHH
Confidence 3333 56778888885 899999999999998843222 2 233457888889999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 494 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 494 ~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
++.+++... +.++. -.+++..+-.++++.++.++++|..++..++..
T Consensus 173 ~L~eia~~S--~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 173 LFLNMLNSS--ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHGGGC--SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhhccc--CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999998521 11111 123556677788888999999999999888654
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.74 E-value=1.1e-06 Score=77.28 Aligned_cols=225 Identities=13% Similarity=0.155 Sum_probs=162.2
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhH
Q 008827 291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK 370 (552)
Q Consensus 291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 370 (552)
.+.+..|..+|.+.|+.++..|..+|.++....+.......-...++.+++++++.|+.+...|+.+|..+..+.+.. .
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-S 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-H
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-H
Confidence 457788999999999999999999999998764443334444678999999999999999999999999998765432 1
Q ss_pred HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827 371 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 450 (552)
Q Consensus 371 ~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la 450 (552)
..+. .....+..++.++++-+++.+...++.+--..+ ... +++++.+++.| ++..++..++.++.+++
T Consensus 111 ~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~~~-------V~~~l~sLl~S-kd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 111 KTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--SKL-------VRTYINELVVS-PDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--CHH-------HHHHHHHHHTC-SSHHHHHHHHHHHHHHG
T ss_pred HHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--hHH-------HHHHHHHHHhC-CChhHHHHHHHHHHHhh
Confidence 1111 145678888899999999999999999832221 111 67888888855 99999999999999999
Q ss_pred CCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhh-c
Q 008827 451 TGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-N 527 (552)
Q Consensus 451 ~~~~--~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~ 527 (552)
..+. .+.. +++.-+-.+|++.|+.++..|..++-.+.... -..+-...+. ++......+. .
T Consensus 179 ~~S~D~~i~~------------~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p--i~~~~~~~~~--~~~~~v~~l~~~ 242 (265)
T 3b2a_A 179 NSSADSGHLT------------LILDEIPSLLQNDNEFIVELALDVLEKALSFP--LLENVKIELL--KISRIVDGLVYR 242 (265)
T ss_dssp GGCSSCCCGG------------GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC--CCSCCHHHHH--HHHHHHHHGGGC
T ss_pred cccCCHHHHH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc--ccHhHHHHHH--HHHHHHHHHHHh
Confidence 8443 3333 33345678899999999999999999998522 1111111111 1223333344 4
Q ss_pred CCCccHHHHHHHHHHHH
Q 008827 528 DPCLDVKLRVKTALEQF 544 (552)
Q Consensus 528 ~~~~~v~~~a~~al~~~ 544 (552)
.+.|.++++|...-..+
T Consensus 243 ~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 243 EGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHH
Confidence 67888999987665544
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.74 E-value=1e-07 Score=88.58 Aligned_cols=184 Identities=11% Similarity=0.171 Sum_probs=136.7
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhh
Q 008827 210 LYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSF 288 (552)
Q Consensus 210 L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~ 288 (552)
+.+.+.+. ++..|..++..|..+....+..... .-..+++.+...+. +.+..++..|+.++..++......-. -
T Consensus 20 l~~~l~s~--~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~--~ 94 (242)
T 2qk2_A 20 FYDKLEEK--KWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS--N 94 (242)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH--H
T ss_pred HHhhhccC--CHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH--H
Confidence 55556544 5889999999999887642221000 01246788888894 99999999999999999865332111 1
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 368 (552)
.-..++|.++..+.++++.+|..|..+|.+++...+. ...++.+...+++.++.+|..++..+..+....+++
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 3356889999999999999999999999999865431 236788889999999999999999999975543332
Q ss_pred h-HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827 369 C-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 406 (552)
Q Consensus 369 ~-~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~ 406 (552)
. -...+ ...++.+..++.+++++++..|..+++.+..
T Consensus 168 ~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1 11222 2468899999999999999999999988864
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.65 E-value=2.9e-07 Score=89.05 Aligned_cols=276 Identities=11% Similarity=0.073 Sum_probs=153.9
Q ss_pred hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827 38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG 116 (552)
Q Consensus 38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~ 116 (552)
...+++++.+++...+....-.+.++++.++.- .=++..+.+=+++ ++-+|-.|+++|+++... +..
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~-----iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~----- 137 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV-----IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TML----- 137 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG-----GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTH-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH-----HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHH-----
Confidence 345667888999999999988888888763321 1234555555665 678999999999998643 222
Q ss_pred ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCH
Q 008827 117 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKE 195 (552)
Q Consensus 117 ~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~ 195 (552)
....+.+.+.+.|.+|.||..|+.+...+....++ .+ .++++.+-+++.+ ++-|+..|..+|..+...+.
T Consensus 138 ---~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-----~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 138 ---QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-----VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-----HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-----HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 23445677789999999999999999999875432 22 4688999999985 45678888888888876543
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCC-CChhhHHHHHHHHHHhhcCC-hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHH
Q 008827 196 DMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 273 (552)
Q Consensus 196 ~~~~~~~~~~~i~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L 273 (552)
. .+.+++..+.... .++-.+-..++.+..++..+ +. .....++.+.++|++.++.|...|++++
T Consensus 209 ~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 209 L---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp H---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 2 3456666555431 12333334455555555433 22 2345788889999999999999999999
Q ss_pred HHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827 274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353 (552)
Q Consensus 274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 353 (552)
..+....... -..++..|..+|.++++++|..|...|..++...+. .+. ..-.-+.+++.++|..+...
T Consensus 275 ~~l~~~~~~~------~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---~v~--~~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAKE------LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---AVT--ACNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC-----------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHHH------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---HHH--HHHHHHHHHccCCcHhHHHH
Confidence 9886532211 124456778888899999999999999888865543 121 23445678888888888877
Q ss_pred HHHHHH
Q 008827 354 ALRALR 359 (552)
Q Consensus 354 a~~aL~ 359 (552)
|+.+|-
T Consensus 344 Aittll 349 (355)
T 3tjz_B 344 AITTLL 349 (355)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 776654
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.65 E-value=2.4e-06 Score=82.62 Aligned_cols=246 Identities=11% Similarity=0.068 Sum_probs=158.5
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 328 (552)
Q Consensus 249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 328 (552)
.+.+.+++++.+++..+|+-..-.+.+++...+. .. =++..+.+=++++++-+|..|..+++++.... ..
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-----~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~- 137 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-----VI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--ML- 137 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-----GG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--TH-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-----HH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HH-
Confidence 3567788899999999999999889888776211 11 34677888889999999999999999998532 22
Q ss_pred HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
....+.+.+.+.+.++.||..|+.+..++... .|+ +++ +.++.+.+++.+.++-++..|+.++..+...+
T Consensus 138 ----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 138 ----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp ----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 13556777889999999999999999999763 343 232 57889999999999999999999999998765
Q ss_pred cchHHHHHhhcCchHHHHHHHhccc--CchhHHHHHHHHHHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh
Q 008827 409 INSVEYIFAEDGIILDAVGRQLRIA--SKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 485 (552)
Q Consensus 409 ~~~~~~i~~~~~~~~~~l~~~L~~~--~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~ 485 (552)
+.. +..++..+... .++-.+...+..+..+..++ +... ..+++.+...|++.++
T Consensus 208 ~~a-----------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~------------~~~~~~l~~~L~~~~~ 264 (355)
T 3tjz_B 208 RLA-----------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD------------SPLFDFIESCLRNKHE 264 (355)
T ss_dssp HHH-----------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------------CCCCCSSH
T ss_pred hHH-----------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH------------HHHHHHHHHHHcCCCh
Confidence 432 33333333321 13434444445554555443 2222 3444677888899999
Q ss_pred hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 486 RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 486 ~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
.|.-+|+.+|..+... .. . . ...++..|..++.++++++|..|...|..+..
T Consensus 265 aVvyEa~k~I~~l~~~---~~--~---~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 265 MVVYEAASAIVNLPGC---SA--K---E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp HHHHHHHHHHTC--------------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred HHHHHHHHHHHhccCC---CH--H---H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 9999999999887631 11 1 1 12345667777777778888776655544443
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.63 E-value=8.2e-09 Score=85.96 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=91.0
Q ss_pred hcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhh
Q 008827 377 LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH 456 (552)
Q Consensus 377 ~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~ 456 (552)
...+.+..+|+++++.++..++++|+++... .++.|...|.+ +++.++..++++|+++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE--------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST--------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS-----
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC-----
Confidence 4577888999999999999999888766422 24677788887 899999999999999863
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHH
Q 008827 457 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR 536 (552)
Q Consensus 457 ~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 536 (552)
...++.|+.+|+++++.+|..|+++|+++.. ..+++.|.++++|+++.||..
T Consensus 72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~ 123 (131)
T 1te4_A 72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKV 123 (131)
T ss_dssp -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHH
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHH
Confidence 1234778888999999999999999999872 124788999999999999999
Q ss_pred HHHHHHHH
Q 008827 537 VKTALEQF 544 (552)
Q Consensus 537 a~~al~~~ 544 (552)
|.+||.+|
T Consensus 124 A~~aL~~i 131 (131)
T 1te4_A 124 AVNYLETH 131 (131)
T ss_dssp HHHHGGGC
T ss_pred HHHHHHhC
Confidence 99998764
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.5e-06 Score=80.78 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=139.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH-hhcccccccchhhhc-cCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCc-hhHH-
Q 008827 254 VVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMN-ETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFT-TRRS- 328 (552)
Q Consensus 254 lv~~L~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~~~~-~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~-~~~~- 328 (552)
+.+.+.+.+|.-|..+...|.. +..+.+.+... -.+ ..++..|.+.+ ++++..++..|+.+|+.++.+.. +...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 5667789999999999999999 86543333210 011 35677888888 79999999999999999986443 2111
Q ss_pred HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827 329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408 (552)
Q Consensus 329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 408 (552)
... .-.++.+++.+++....++..+..++..++...++..- .-.-...++.++..+++.++.+++.++.+|..++...
T Consensus 100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~-~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS-SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT-TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 111 24789999999999999999999999888765432100 0000125678888899999999999999999998655
Q ss_pred c---chHHHHH-hhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827 409 I---NSVEYIF-AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 451 (552)
Q Consensus 409 ~---~~~~~i~-~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~ 451 (552)
+ ......+ .. +++.+.+.+++ .++++|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~---iip~l~~~l~D-~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDE---VVPIVIQIVND-TQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTT---HHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH---HHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 4 2233333 22 79999999988 899999999999988764
No 81
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.53 E-value=0.0001 Score=82.81 Aligned_cols=481 Identities=11% Similarity=0.066 Sum_probs=241.6
Q ss_pred ccchHHHHHhhcCC------CCcchHHHHHHHHhhcCC-----h-hhH----HHHHhcCchHHHHHhh----cC--CH--
Q 008827 35 EENMEFLLSLLNNE------SENVSGLGASIISHSCKT-----S-LEQ----KLLFDAGVLKRLTSLL----GG--SL-- 90 (552)
Q Consensus 35 ~~~i~~l~~ll~~~------~~~~~~~a~~~l~~~~~~-----~-~~~----~~l~~~g~i~~L~~lL----~~--~~-- 90 (552)
++.++.++..++++ ++..++.+..++..+++. . ..| ..+. ..++.++.++ .. ++
T Consensus 121 p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~~~l~~~~~~~~ 198 (971)
T 2x1g_F 121 PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVERYLKLQMNRVW 198 (971)
T ss_dssp -----HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCC
Confidence 34667788888754 455778888888877642 0 111 2222 2244444443 31 22
Q ss_pred -----HHHHHHHHHHHHHhc--CChhhhhhhccccCCccHHHHHHHH----------------hcCChhhHHHHHHHHHH
Q 008827 91 -----IQRDASLESIATIFK--NNPEVVSQFVGPDTGRTLSCIIEIV----------------KDRFARTRLLASLCLIV 147 (552)
Q Consensus 91 -----~v~~~al~~L~~l~~--~~~~~~~~~~~~~~~~~l~~l~~ll----------------~~~~~~vr~~A~~~L~~ 147 (552)
.++..++.|+..... .-+.. . ....++.++. + .++++..|..|+.|+..
T Consensus 199 ~~~~~~~~~~al~~l~~~~~~~~ip~~---~----~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 270 (971)
T 2x1g_F 199 DAEAYSNMNRAVKCVGTWIKNIGYTIE---G----CVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVN 270 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCGG---G----HHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHhhCCcCcc---c----cccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHH
Confidence 688899999987554 21111 1 1234455555 3 12567899999999999
Q ss_pred HhhhCCCcchhhhhHHhHHHHHHHhc-------C-CCC---chhchHHHHHHHhhcCCHHHHH-H---------HHHhCc
Q 008827 148 IRNASPCYLQDVGIKTKLINNLLELL-------D-DPG---RVGDEASFAFSSLIAEKEDMQK-L---------AFEVNG 206 (552)
Q Consensus 148 l~~~~~~~~~~~~~~~g~i~~Lv~ll-------~-~~~---~v~~~a~~~L~~l~~~~~~~~~-~---------~~~~~~ 206 (552)
+............+ ...+|.++.+. . ++. +.....+..+..++......-. . -.-...
T Consensus 271 i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (971)
T 2x1g_F 271 IIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRI 349 (971)
T ss_dssp HHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHH
Confidence 88743211111111 23444444422 2 222 4445556666666543322110 0 000122
Q ss_pred HHHHHHhhhcC---CCChhhHHHHHHHHHHhhcC---------ChhHHHHHHh--cccHHHHHHhcCCC-C---------
Q 008827 207 VDKLYNHLQKG---SLHPRRFEGILLALADMCSK---------LECCRSRCLS--LQVLKLVVDALAHD-S--------- 262 (552)
Q Consensus 207 i~~L~~~L~~~---~~~~~~~~~a~~aL~~l~~~---------~~~~~~~~~~--~~~l~~lv~~L~~~-~--------- 262 (552)
++.++.+...+ ..++++...++..+..++.. .+..+..+.. ..+++.++..+.-+ +
T Consensus 350 l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~ 429 (971)
T 2x1g_F 350 VQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD 429 (971)
T ss_dssp HHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHH
T ss_pred HHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHh
Confidence 34444433231 12466888888888777531 1111111111 13555555555321 1
Q ss_pred -----HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008827 263 -----SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDFTTRRSTFIR 332 (552)
Q Consensus 263 -----~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~ 332 (552)
...|..+..++..++...+. . .-.-+++.+-..+.+ +++..+++|+.+++.++.+........+.
T Consensus 430 e~~~f~~~R~~~~~~l~~~~~~~~~---~--~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~ 504 (971)
T 2x1g_F 430 DLECFRCYRQDISDTFMYCYDVLND---Y--ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP 504 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTT---H--HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---H--HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 14667777788777654221 1 111222333333332 57889999999999998765432211111
Q ss_pred hCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch
Q 008827 333 LGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS 411 (552)
Q Consensus 333 ~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 411 (552)
..++.+..+.. ++++.+|..++|+++.++...... . ..+ ...++.++..+ + +.++..|++++.+++......
T Consensus 505 -~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~-~~l-~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 505 -RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-P-AYI-PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp -HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CH-HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred -HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-H-HHH-HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence 12332223332 358899999999999987643211 1 111 13456666666 2 789999999999999765433
Q ss_pred HHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhH
Q 008827 412 VEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRL 487 (552)
Q Consensus 412 ~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~ 487 (552)
....+.. +++.+...+.+. -+.+.+..+..+++.++... +......+..++ ..++..+...++.. +...
T Consensus 578 l~p~~~~---ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll----~~l~~~l~~~~~~~~~~~~~ 650 (971)
T 2x1g_F 578 LKPYADP---LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV----SPCFEELQAICQADSKTPAA 650 (971)
T ss_dssp HHHHHHH---HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH----HHHHHHHHHHHTC---CHHH
T ss_pred ccccHHH---HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----HHHHHHHHHHHhcCCCChhh
Confidence 3332322 567777777652 24567778888888776532 223333443111 12223333444333 3333
Q ss_pred HHHHHHHHHhhc---CCCCCC----C-----HHHHHHHHHCCcHHHHHhhhcC--CCccHHHHHHHHHHHHhh
Q 008827 488 RTAAVWAVLNLT---CSSSPG----S-----SGRLVKLHDAGIVSHVKNMVND--PCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 488 ~~~a~~~l~~l~---~~~~~~----~-----~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~a~~al~~~~~ 546 (552)
+.....++..++ ..-... . .+... -....+.+.+..++++ .+.++.+++..+++.+..
T Consensus 651 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 651 RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 334344443333 100000 0 00111 1123456666666643 356899999999988654
No 82
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.52 E-value=5.1e-07 Score=83.92 Aligned_cols=192 Identities=10% Similarity=0.065 Sum_probs=136.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH-hhcCCchhHHHHHh-hCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcccCC-hHhHH
Q 008827 296 PLVRLLDDTSTAVQVAALGAISN-IVVDFTTRRSTFIR-LGGVKLLVQLS-KSMDSTIRLNALRALRNLIFLAE-DKCKE 371 (552)
Q Consensus 296 ~Lv~lL~~~~~~v~~~a~~aL~n-l~~~~~~~~~~~~~-~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~-~~~~~ 371 (552)
.+...++++++.-|.+|...|.. ++.+.+.....-.+ ...+..|.+.+ ++.+..++..|+.+++.++.+.. +....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667789999999999999999 87543321100000 14567778888 78999999999999999986443 22221
Q ss_pred HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH-HhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827 372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI-FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 450 (552)
Q Consensus 372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la 450 (552)
-.....++.++..+.+..+.|+..+..++..++...++...+- ++ .+++.+...|++ +++.++..++..|..++
T Consensus 100 -~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~---~ll~~l~~~l~~-k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 100 -DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE---DMLKDILEHMKH-KTPQIRMECTQLFNASM 174 (249)
T ss_dssp -HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH---HHHHHHHHHTTC-SSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH---HHHHHHHHHHcC-CChHHHHHHHHHHHHHH
Confidence 1122368889999999999999999999988886432100000 00 167777788887 79999999999999988
Q ss_pred CCChh---hHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 451 TGKES---HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 451 ~~~~~---~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
..... .....+. ..++|.|.+++.++++.+|.+|..+++.++
T Consensus 175 ~~~~~~~~~l~~~l~-------~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLK-------DEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHCCSCSHHHHHHHT-------TTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 64331 1112220 367799999999999999999999999887
No 83
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.49 E-value=5.3e-05 Score=85.16 Aligned_cols=473 Identities=12% Similarity=0.086 Sum_probs=247.1
Q ss_pred ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHHhcCCh
Q 008827 35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNP 108 (552)
Q Consensus 35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~~~~~v~~~al~~L~~l~~~~~ 108 (552)
++....+..+|. +.+..+|..|+.+|.+..+. ++....-.+...++.+...-.++..+|.+...++..++...-
T Consensus 38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~ 117 (971)
T 2x1g_F 38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHML 117 (971)
T ss_dssp THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc
Confidence 456667888886 45678999999999986432 222222334444555544433356788888899999875431
Q ss_pred hhhhhhccccCCccHHHHHHHHhcC------ChhhHHHHHHHHHHHhhh----CCCcch----hhhh--HHhHHHHHHHh
Q 008827 109 EVVSQFVGPDTGRTLSCIIEIVKDR------FARTRLLASLCLIVIRNA----SPCYLQ----DVGI--KTKLINNLLEL 172 (552)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~ll~~~------~~~vr~~A~~~L~~l~~~----~~~~~~----~~~~--~~g~i~~Lv~l 172 (552)
..+ .+.++.++..++++ ++..+..+...|..+... .+...+ +.+. -..+++.+.++
T Consensus 118 p~W--------p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~ 189 (971)
T 2x1g_F 118 GEW--------PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERY 189 (971)
T ss_dssp CC--------------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ccc--------cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 45677888888765 567788888888876641 110000 0110 11234444444
Q ss_pred cC--CCC-------chhchHHHHHHHhhc--CCHHHHHHHHHhCcHHHHHHhhh--------------cCCCChhhHHHH
Q 008827 173 LD--DPG-------RVGDEASFAFSSLIA--EKEDMQKLAFEVNGVDKLYNHLQ--------------KGSLHPRRFEGI 227 (552)
Q Consensus 173 l~--~~~-------~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~~L~--------------~~~~~~~~~~~a 227 (552)
+. +.+ .++..+..++..... .-+.. .....++.+.. |. ....+++.++.|
T Consensus 190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a 264 (971)
T 2x1g_F 190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC 264 (971)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence 43 222 456666666654433 11111 12233455554 31 000236788999
Q ss_pred HHHHHHhhcCChh-HHHHHHhcccHHHHHH-------hcCCCC---HHHHHHHHHHHHHhhcccccccc---------hh
Q 008827 228 LLALADMCSKLEC-CRSRCLSLQVLKLVVD-------ALAHDS---SDVRSAACMCLRSVSRSIKNLSA---------GS 287 (552)
Q Consensus 228 ~~aL~~l~~~~~~-~~~~~~~~~~l~~lv~-------~L~~~~---~~v~~~a~~~L~~ls~~~~~~~~---------~~ 287 (552)
+.++..+....+. -+.... ...+|.++. .+.+++ .......+..+..+.......-. ..
T Consensus 265 ~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (971)
T 2x1g_F 265 LKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELS 343 (971)
T ss_dssp HHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 9999998864221 011111 112333332 224444 36777778877777643211100 00
Q ss_pred hhccCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC---------chhHH---HHHhhCcHHHHHHhhcCCC---
Q 008827 288 FMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDF---------TTRRS---TFIRLGGVKLLVQLSKSMD--- 347 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~---------~~~~~---~~~~~g~i~~L~~ll~~~~--- 347 (552)
-.-..+++.++.+..+ .++++...+++....++... ..... .++ ...++.++..+..++
T Consensus 344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~~~~p~~~~ 422 (971)
T 2x1g_F 344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY-AHLTRILVRKSEQPDEKS 422 (971)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH-HHHHHHHHHHTSCCCTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH-HHHHHHHHHHhcCCCccc
Confidence 0011345555555433 46788888988887775411 11111 111 245555555553221
Q ss_pred ------------HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-----CChhHHHHHHHHHHHhhcCCcc
Q 008827 348 ------------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-----PEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 348 ------------~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
...|..+..++..++...+. .++. ..++.+.+.+.+ .++..++.++.+++.++.+..+
T Consensus 423 ~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~----~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~ 497 (971)
T 2x1g_F 423 LAKWSSDDLECFRCYRQDISDTFMYCYDVLND----YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGG 497 (971)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT----HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH----HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcCh
Confidence 13455566666666543221 1111 122333333332 6788999999999999877543
Q ss_pred hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHH
Q 008827 411 SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTA 490 (552)
Q Consensus 411 ~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~ 490 (552)
.....+.. +++.+..+..+.+++.++..++|+++.++.--..+. ..+ ..+++.|+..| + +.++..
T Consensus 498 ~~~~~l~~---l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l--------~~vl~~l~~~l-~--~~v~~~ 562 (971)
T 2x1g_F 498 EEKRQIPR---LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI--------PPAINLLVRGL-N--SSMSAQ 562 (971)
T ss_dssp ---CHHHH---HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH--------HHHHHHHHHHH-H--SSCHHH
T ss_pred hhhHHHHH---HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH--------HHHHHHHHHHh-C--hHHHHH
Confidence 22111111 344332222112478899999999999885111111 122 34556777777 3 789999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC--CccHHHHHHHHHHHHhhh
Q 008827 491 AVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 491 a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~al~~~~~~ 547 (552)
|++++.+++. .......... ..++..|.++++.+ ..+.+..+..|+..+...
T Consensus 563 A~~al~~l~~----~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 563 ATLGLKELCR----DCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHH----HCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH----HHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 9999999994 2222222221 23455666666653 346778888888887653
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.49 E-value=6.3e-05 Score=74.46 Aligned_cols=344 Identities=13% Similarity=0.077 Sum_probs=189.8
Q ss_pred CccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCC--cchhhhhHH-hHH-HHHHHhcCCCC-chhchHHHHHHHhhcC
Q 008827 120 GRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPC--YLQDVGIKT-KLI-NNLLELLDDPG-RVGDEASFAFSSLIAE 193 (552)
Q Consensus 120 ~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~--~~~~~~~~~-g~i-~~Lv~ll~~~~-~v~~~a~~~L~~l~~~ 193 (552)
+.+...++.+++ ..+.++.......+..+....+- .....+... ... +.+-.++..++ -....++.+++.++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 456666777666 45566666666666666665430 000111111 111 12222232222 2344555555555432
Q ss_pred CHHHHHHHHHhCcHH--HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcc--cHHHHHHhcCC---------
Q 008827 194 KEDMQKLAFEVNGVD--KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ--VLKLVVDALAH--------- 260 (552)
Q Consensus 194 ~~~~~~~~~~~~~i~--~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~--~l~~lv~~L~~--------- 260 (552)
.+..... -...+. .++..|.... ....+..++.+|..+.. .+++|..+.+.+ .+|.++..++.
T Consensus 156 ~~~~~~~--l~~l~~~~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 156 GLHNVKL--VEKLLKNNNLINILQNIE-QMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TTCCHHH--HHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CCccHhH--HHHHhhhHHHHHHhcccc-CCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 2211000 001122 3555565531 23445678888888876 578998887654 46776554331
Q ss_pred --------CCHHHHHHHHHHHHHhhcccccccchhhhccCcH--HHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchh---
Q 008827 261 --------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV--IPLVRLLD-DTSTAVQVAALGAISNIVVDFTTR--- 326 (552)
Q Consensus 261 --------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i--~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~--- 326 (552)
....+++.++-|++-|+.+. ..... +...++. +.|+.+++ ...+.+..-+..+|.|+....+..
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~-l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANE-LVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSH-HHHHH-HHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCH-HHHHH-HHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence 13567899999999999984 34444 5555543 66777787 567889999999999999754211
Q ss_pred --HHHHHhhCcHHHHHHhhcC---CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827 327 --RSTFIRLGGVKLLVQLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV 401 (552)
Q Consensus 327 --~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L 401 (552)
.+.++..+++ ++++.|.. +|+++..-.-.....|-. . ++-+.+ .-+....+.
T Consensus 310 ~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~--------~----------~~~lts----fDeY~~El~ 366 (480)
T 1ho8_A 310 VIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILEN--------E----------YQELTS----FDEYVAELD 366 (480)
T ss_dssp HHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHH--------H----------HHTCCH----HHHHHHHHH
T ss_pred HHHHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHH--------H----------HHhccc----HHHHHHHHh
Confidence 2223334454 45554443 355554432221111100 0 000000 001111111
Q ss_pred HHhhcCCcchHH-HHHhhc--------CchHHHHHHHhcc---------cCchhHHHHHHHHHHhhcCCChhhHHHHHHH
Q 008827 402 RNLVDGRINSVE-YIFAED--------GIILDAVGRQLRI---------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQ 463 (552)
Q Consensus 402 ~~l~~~~~~~~~-~i~~~~--------~~~~~~l~~~L~~---------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~ 463 (552)
.......|.+.. ..+.+. ..++..|..+|.+ +.++.+..-||+-|+.++...|..+. ++++
T Consensus 367 sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-i~~~ 445 (480)
T 1ho8_A 367 SKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-VLDK 445 (480)
T ss_dssp HTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-HHHH
T ss_pred cCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-HHHH
Confidence 111112222211 222221 1277888888874 35788899999999999987775554 5553
Q ss_pred hhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 464 LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 464 ~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
-|+-..+++++.++|++||.+|..|+..+.
T Consensus 446 ------lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 446 ------TGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp ------HSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 788899999999999999999999998775
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.49 E-value=3.5e-08 Score=82.07 Aligned_cols=122 Identities=12% Similarity=0.084 Sum_probs=91.3
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch
Q 008827 332 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS 411 (552)
Q Consensus 332 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 411 (552)
....++.+..+++++++.+|..|+++|+++.. . .++.|.+++.++++.++..++++|+++.. +.
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~- 73 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--E-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER- 73 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS--T-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH-
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH-
Confidence 34678889999999999999999999887632 1 25788899999999999999999998853 11
Q ss_pred HHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHH
Q 008827 412 VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA 491 (552)
Q Consensus 412 ~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a 491 (552)
.++.|...|.+ +++.|+..++++|+++.. ...++.|..+++++++.+|..|
T Consensus 74 ----------a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~------------------~~a~~~L~~~l~d~~~~vr~~A 124 (131)
T 1te4_A 74 ----------AVEPLIKLLED-DSGFVRSGAARSLEQIGG------------------ERVRAAMEKLAETGTGFARKVA 124 (131)
T ss_dssp ----------HHHHHHHHHHH-CCTHHHHHHHHHHHHHCS------------------HHHHHHHHHHTTSCCTHHHHHH
T ss_pred ----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------HHHHHHHHHHHhCCCHHHHHHH
Confidence 56777778877 899999999999998852 2335788899999999999999
Q ss_pred HHHHHhh
Q 008827 492 VWAVLNL 498 (552)
Q Consensus 492 ~~~l~~l 498 (552)
+++|.++
T Consensus 125 ~~aL~~i 131 (131)
T 1te4_A 125 VNYLETH 131 (131)
T ss_dssp HHHGGGC
T ss_pred HHHHHhC
Confidence 9998754
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.41 E-value=0.00021 Score=80.28 Aligned_cols=466 Identities=13% Similarity=0.111 Sum_probs=242.4
Q ss_pred ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHHhcC-C
Q 008827 35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKN-N 107 (552)
Q Consensus 35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~~~~~v~~~al~~L~~l~~~-~ 107 (552)
++..+.+..+|. +.+..+|..|+.+|.+..+. ++......+...++.+...-.++..+|.+...++..++.. .
T Consensus 56 p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~ 135 (963)
T 2x19_B 56 PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMM 135 (963)
T ss_dssp TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC
Confidence 456677888886 45677999999999986432 1222222333344444442212567888888899888754 2
Q ss_pred hhhhhhhccccCCccHHHHHHHHhc-----CChhhHHHHHHHHHHHhhhC-CCcc--------hhhhh--HHhHHHHHHH
Q 008827 108 PEVVSQFVGPDTGRTLSCIIEIVKD-----RFARTRLLASLCLIVIRNAS-PCYL--------QDVGI--KTKLINNLLE 171 (552)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~vr~~A~~~L~~l~~~~-~~~~--------~~~~~--~~g~i~~Lv~ 171 (552)
++.+ .+.++.++.++++ +++..+..+...|..+.... .... .+.+. -..+++.+..
T Consensus 136 p~~W--------p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~ 207 (963)
T 2x19_B 136 PDAW--------PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQ 207 (963)
T ss_dssp TTTS--------TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHH
T ss_pred cccc--------chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 4677888888876 35667788888888776421 0000 00011 1234555555
Q ss_pred hcCCCC---chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh--hHHHH--
Q 008827 172 LLDDPG---RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE--CCRSR-- 244 (552)
Q Consensus 172 ll~~~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~--~~~~~-- 244 (552)
++.+.. .+...+..++.....-.... ......++.+++.+. +++.++.++.++..+....+ .....
T Consensus 208 ~l~~~~~~~~~~~~~l~~l~~wi~~~~~~---~~~~~ll~~l~~~l~----~~~~~~~a~~~l~~i~~~~~~~~~~~~~~ 280 (963)
T 2x19_B 208 LLQQPSSPSCVRQKVLKCFSSWVQLEVPL---QDCEALIQAAFAALQ----DSELFDSSVEAIVNAISQPDAQRYVNTLL 280 (963)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHTSSCCG---GGTHHHHHHHHHHTT----STTTHHHHHHHHHHHHTCTTGGGCHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHHHHcCCCCc---ccchHHHHHHHHHhC----CchHHHHHHHHHHHHHcccccccCHHHHH
Confidence 565321 24455555554322111000 001233555666553 25688999999999876422 11111
Q ss_pred -HHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------chhhhccCcHHHHHHhhcC-----CCHHHHH
Q 008827 245 -CLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS------AGSFMNETIVIPLVRLLDD-----TSTAVQV 310 (552)
Q Consensus 245 -~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~------~~~~~~~~~i~~Lv~lL~~-----~~~~v~~ 310 (552)
+.. .+..+.+...+..++.......+.++..+.......- .. .-..+++.++.+..+ .+.++..
T Consensus 281 ~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--~~~~~l~~ll~~~~~~~~~~~~~~v~~ 358 (963)
T 2x19_B 281 KLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ--SFLALVNMIMFCTGIPGHYPVNETTSS 358 (963)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHTCSSCTTTTCGGGG
T ss_pred HHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH--HHHHHHHHHHHHHcCCCCCCchhhhhh
Confidence 111 1122223333344555666667777777654311100 00 011445555555554 3455666
Q ss_pred HHHHHHHHhhcCC--------chhHHHHHh--hCcHHHHHHhhcCCCH---------------HHHHHHHHHHHHhcccC
Q 008827 311 AALGAISNIVVDF--------TTRRSTFIR--LGGVKLLVQLSKSMDS---------------TIRLNALRALRNLIFLA 365 (552)
Q Consensus 311 ~a~~aL~nl~~~~--------~~~~~~~~~--~g~i~~L~~ll~~~~~---------------~v~~~a~~aL~~l~~~~ 365 (552)
.+......++.+. +.....+.. ...++.++..+..+++ ..|..+..+|..++...
T Consensus 359 ~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~ 438 (963)
T 2x19_B 359 LTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML 438 (963)
T ss_dssp GGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6665555554311 111111100 1344555554443221 12333444444443211
Q ss_pred ChHhHHHHHHhhcHHHHHhhh----cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh---cccCchhH
Q 008827 366 EDKCKEEIFMELTASLLASLI----CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL---RIASKAEI 438 (552)
Q Consensus 366 ~~~~~~~i~~~~~~~~l~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L---~~~~~~~v 438 (552)
. ..++ ...++.+.+.+ .+.++..++.++.+++.++.+..+.... .++.+...+ .+ +++.+
T Consensus 439 ~----~~~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~-------~l~~l~~~l~~l~~-~~~~v 505 (963)
T 2x19_B 439 G----AELL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSD-------VVPGLIGLIPRISI-SNVQL 505 (963)
T ss_dssp T----HHHH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCS-------HHHHHHHHGGGSCC-CSHHH
T ss_pred c----HHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhH-------HHHHHHHHHHhCCC-CcHHH
Confidence 1 1111 12233444445 5678899999999999998774321111 222333333 22 46789
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCc
Q 008827 439 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI 518 (552)
Q Consensus 439 ~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~ 518 (552)
+..++|+++.++.--..+. ..+ ..+++.++..|++ +.++..|++++.+++.. ........ -..+
T Consensus 506 r~~~~~~l~~~~~~l~~~~-~~l--------~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~----~~~~l~p~-~~~i 569 (963)
T 2x19_B 506 ADTVMFTIGALSEWLADHP-VMI--------NSVLPLVLHALGN--PELSVSSVSTLKKICRE----CKYDLPPY-AANI 569 (963)
T ss_dssp HHHHHHHHHHTHHHHHHCH-HHH--------TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH----TGGGCTTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHhCH-HHH--------HHHHHHHHHHhCC--chHHHHHHHHHHHHHHH----HHHHHHhh-HHHH
Confidence 9999999999875211111 222 4677888888864 88999999999999841 11111010 0123
Q ss_pred HHHHHhhhcCC--CccHHHHHHHHHHHHhh
Q 008827 519 VSHVKNMVNDP--CLDVKLRVKTALEQFNS 546 (552)
Q Consensus 519 ~~~L~~ll~~~--~~~v~~~a~~al~~~~~ 546 (552)
+..|.+++..+ ..+.+..+..|+..+..
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 44455555432 34677778888887764
No 87
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.40 E-value=0.002 Score=72.91 Aligned_cols=431 Identities=11% Similarity=0.038 Sum_probs=228.2
Q ss_pred ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC------hhhHHHHHhcCchHHHHHhhcC------CHHHHHHHHHHHH
Q 008827 35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT------SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIA 101 (552)
Q Consensus 35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~------~~~~~~l~~~g~i~~L~~lL~~------~~~v~~~al~~L~ 101 (552)
++....+..+|. +.+..+|..|+.+|.+..+. .+.|.. .+...++.+...-.+ +..++.+...++.
T Consensus 47 p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~-ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia 125 (1049)
T 3m1i_C 47 PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIG-IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125 (1049)
T ss_dssp TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHH-HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHH-HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHH
Confidence 345566667775 45678999999999986432 122322 233333333322211 2467777778888
Q ss_pred HHhcC-ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCC----Cc-c--h-----hhhhH--HhHH
Q 008827 102 TIFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP----CY-L--Q-----DVGIK--TKLI 166 (552)
Q Consensus 102 ~l~~~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~----~~-~--~-----~~~~~--~g~i 166 (552)
.++.. .++.+ .+.++.++..++ .++..+..+..+|..+...-. .. . + +.+.. ..++
T Consensus 126 ~Ia~~~~p~~W--------p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~ 196 (1049)
T 3m1i_C 126 QILKQEWPQNW--------PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIF 196 (1049)
T ss_dssp HHHHHHTTTTC--------TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccc--------hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 87754 23333 467788888886 555667777777777663211 00 0 0 11111 1233
Q ss_pred HHHHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC--hh--
Q 008827 167 NNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL--EC-- 240 (552)
Q Consensus 167 ~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~--~~-- 240 (552)
+.+..++.+ +..++..+..++......-+. ..+.+...++.+++.+.. ++.++..++.+|..+.... +.
T Consensus 197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~ 271 (1049)
T 3m1i_C 197 KLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDND 271 (1049)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchh
Confidence 344444442 345677777887765543321 123445556666643332 3778999999999887641 21
Q ss_pred -HHHHHHh--cccHHHHHH-h-------------cCCCCHHHHHHHHHHHHHhhcccccc------cchhhhccCcHHHH
Q 008827 241 -CRSRCLS--LQVLKLVVD-A-------------LAHDSSDVRSAACMCLRSVSRSIKNL------SAGSFMNETIVIPL 297 (552)
Q Consensus 241 -~~~~~~~--~~~l~~lv~-~-------------L~~~~~~v~~~a~~~L~~ls~~~~~~------~~~~~~~~~~i~~L 297 (552)
....+.. .+.+..+.. + -.+.+.+.....+..+..+....... ... . -..+++.+
T Consensus 272 ~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-l~~~l~~l 349 (1049)
T 3m1i_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE-L-LLNAHQYL 349 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH-H-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH-H-HHHHHHHH
Confidence 1111111 122222211 1 12234455556666665543321100 001 0 12356666
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhc----CCc--hhHHHHHhhCcHHHHHHhhcCC-------------------CH---H
Q 008827 298 VRLLDDTSTAVQVAALGAISNIVV----DFT--TRRSTFIRLGGVKLLVQLSKSM-------------------DS---T 349 (552)
Q Consensus 298 v~lL~~~~~~v~~~a~~aL~nl~~----~~~--~~~~~~~~~g~i~~L~~ll~~~-------------------~~---~ 349 (552)
+.....++.++...|......++. ... .....++ ...++.++..+..+ +. .
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~ 428 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ 428 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence 666677788898888877777664 111 1111111 13445555444221 11 2
Q ss_pred HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHHHHhhcCCcchHH-HHHhhcCchHHHH
Q 008827 350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVE-YIFAEDGIILDAV 426 (552)
Q Consensus 350 v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~~~~~~~~l 426 (552)
.+..+..+|..++.-. + ..++ ....+.+.+.+. +.++..++.++++++.++.......+ ..+.. +++.+
T Consensus 429 ~~~~~~~~L~~l~~~~-~---~~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~---v~~~l 500 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLN-V---IDTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT---VIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHC-H---HHHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHccC-H---HHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHH---HHHHH
Confidence 2334444555554311 1 1111 123344445554 46788999999999999865432211 11111 45555
Q ss_pred HHHhcc----cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 427 GRQLRI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 427 ~~~L~~----~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
..+... .+++-++..++|+++.++.-...+- ..+ ..+++.++..+.++++.++..|++++.+++.
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l--------~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL--------RTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH--------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 543321 1344555568999998774211111 122 3566788888998899999999999999994
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.32 E-value=0.00041 Score=77.90 Aligned_cols=451 Identities=9% Similarity=0.008 Sum_probs=233.6
Q ss_pred hcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCcc
Q 008827 45 LNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT 122 (552)
Q Consensus 45 l~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 122 (552)
..+++...+..|-..|.+.-+. -++...+..+|.+ +..+|..|+..|.+....+ +..+-. .+...
T Consensus 34 ~~~~~~~~r~~A~~~L~~~~~~---------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~---w~~l~~-~~~~~ 100 (963)
T 2x19_B 34 YYDPNIENKNLAQKWLMQAQVS---------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRY---WSDIPT-DQYES 100 (963)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHS---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHC---GGGSCG-GGHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhcC---------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhC---HHhCCH-HHHHH
Confidence 3356666777777777665433 2455667777764 5689999999998866432 111100 01111
Q ss_pred H-HHHHHHHhc---CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC------CCchhchHHHHHHHhhc
Q 008827 123 L-SCIIEIVKD---RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD------PGRVGDEASFAFSSLIA 192 (552)
Q Consensus 123 l-~~l~~ll~~---~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~------~~~v~~~a~~~L~~l~~ 192 (552)
+ ..++..+.+ .++.+|...+.++..++...-- ..+.+.++.|+++++. +......+...|..+..
T Consensus 101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-----~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-----DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-----TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-----cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence 2 234444332 4688999999999999875311 1145788999998874 22244555666665553
Q ss_pred CC-----HHHHHHHHH---hCcHHHH----HHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC
Q 008827 193 EK-----EDMQKLAFE---VNGVDKL----YNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH 260 (552)
Q Consensus 193 ~~-----~~~~~~~~~---~~~i~~L----~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~ 260 (552)
+- +..++.... ...++.+ ..++.....+..++..++.++.....-+... ......++.+.+.+.
T Consensus 176 e~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~---~~~~~ll~~l~~~l~- 251 (963)
T 2x19_B 176 EFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPL---QDCEALIQAAFAALQ- 251 (963)
T ss_dssp HHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCG---GGTHHHHHHHHHHTT-
T ss_pred HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCc---ccchHHHHHHHHHhC-
Confidence 10 101111111 1223333 3444443222246777777775543211110 012346777777774
Q ss_pred CCHHHHHHHHHHHHHhhcccccc-cchhhhccCcHHHHHH-------hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008827 261 DSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPLVR-------LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR 332 (552)
Q Consensus 261 ~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~Lv~-------lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~ 332 (552)
+++++..|+.++..+....... ... . -...++.++. .+...|.+.....+..+..+...... .+.+
T Consensus 252 -~~~~~~~a~~~l~~i~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~---~l~~ 325 (963)
T 2x19_B 252 -DSELFDSSVEAIVNAISQPDAQRYVN-T-LLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSR---ALLD 325 (963)
T ss_dssp -STTTHHHHHHHHHHHHTCTTGGGCHH-H-HHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred -CchHHHHHHHHHHHHHcccccccCHH-H-HHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHH---HHHc
Confidence 6789999999999986542111 111 1 1112222222 22344556656666666655432111 1110
Q ss_pred --------hCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhcccC---C----hHhHH---HHHHhhcHHHHHhhhcCC
Q 008827 333 --------LGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLA---E----DKCKE---EIFMELTASLLASLICDP 389 (552)
Q Consensus 333 --------~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~---~----~~~~~---~i~~~~~~~~l~~ll~~~ 389 (552)
...++.++..... .++.+...++.....++... + +..+. ..+. ..++.++..+..+
T Consensus 326 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~ll~~~~~p 404 (963)
T 2x19_B 326 QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYF-QLVDVLLHKAQFP 404 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH-HHHHHHHHHHSCC
T ss_pred CccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHcCC
Confidence 1345555555553 34556666666555554311 0 11111 1111 1234444444322
Q ss_pred Chh---------------HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc---ccCchhHHHHHHHHHHhhcC
Q 008827 390 EPS---------------VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR---IASKAEIEIQGMYVLGNVAT 451 (552)
Q Consensus 390 ~~~---------------v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~---~~~~~~v~~~a~~~L~~la~ 451 (552)
+.+ .+..+..+|..++...++ .++.. +++.+...++ ++.++..++.++++++.++.
T Consensus 405 ~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l~~---~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~ 478 (963)
T 2x19_B 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELLSN---LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAE 478 (963)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHHHH---HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTT
T ss_pred CcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHHHH---HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence 211 122333444444321110 11110 3445555552 22678899999999999998
Q ss_pred CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCc
Q 008827 452 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL 531 (552)
Q Consensus 452 ~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~ 531 (552)
+........+. .+++.+.. +.++++.+|..++|+++.++. -.....+. -..+++.|.+.+.+ +
T Consensus 479 ~~~~~~~~~l~--------~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~----~l~~~~~~--l~~vl~~l~~~l~~--~ 541 (963)
T 2x19_B 479 TIDVNYSDVVP--------GLIGLIPR-ISISNVQLADTVMFTIGALSE----WLADHPVM--INSVLPLVLHALGN--P 541 (963)
T ss_dssp SCCSSCCSHHH--------HHHHHGGG-SCCCSHHHHHHHHHHHHHTHH----HHHHCHHH--HTTTHHHHHHHTTC--G
T ss_pred hcCchhhHHHH--------HHHHHHHh-CCCCcHHHHHHHHHHHHHHHH----HHHhCHHH--HHHHHHHHHHHhCC--c
Confidence 65421111221 22232222 234678899999999999983 01111122 24667888887764 8
Q ss_pred cHHHHHHHHHHHHhhh
Q 008827 532 DVKLRVKTALEQFNSF 547 (552)
Q Consensus 532 ~v~~~a~~al~~~~~~ 547 (552)
.|+..|..|+.++.+.
T Consensus 542 ~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 542 ELSVSSVSTLKKICRE 557 (963)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.28 E-value=0.01 Score=66.17 Aligned_cols=465 Identities=11% Similarity=0.058 Sum_probs=241.1
Q ss_pred ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhcC------CHHHHHHHHHHHHH
Q 008827 35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIAT 102 (552)
Q Consensus 35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~~------~~~v~~~al~~L~~ 102 (552)
++.......+|. +.++.++..|+.+|.+..+. +.......+...++.+...-.+ +.-++.+...++..
T Consensus 47 p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~ 126 (1023)
T 4hat_C 47 PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQ 126 (1023)
T ss_dssp TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHH
Confidence 345556666765 45788999999999886542 2222233344445544443322 23455556677777
Q ss_pred HhcC-ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhh----CCCc---c-----hhhhhH--HhHHH
Q 008827 103 IFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNA----SPCY---L-----QDVGIK--TKLIN 167 (552)
Q Consensus 103 l~~~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~----~~~~---~-----~~~~~~--~g~i~ 167 (552)
++.. .+..+ .+.++.++.+++++ +.........|..+... .... . ++.+.. ..+++
T Consensus 127 I~~~~~p~~W--------p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ 197 (1023)
T 4hat_C 127 ILKQEWPQNW--------PEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFK 197 (1023)
T ss_dssp HHHHHTTTTC--------TTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhc--------hHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 7643 23333 45678888887653 34455566666655442 1010 0 011111 12344
Q ss_pred HHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHH-HhhhcCCCChhhHHHHHHHHHHhhcCC---h--
Q 008827 168 NLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSKL---E-- 239 (552)
Q Consensus 168 ~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~~---~-- 239 (552)
.+.+++. .++++...+..++....+.-+- ..+++.+.++.++ .+|.. +..+..|+.+|..+...+ +
T Consensus 198 ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i--~~i~~~~ll~~l~~~~L~~----~~~r~~A~ecL~eIv~~~~~~~~~ 271 (1023)
T 4hat_C 198 LCFQVLEQGASSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMTS----PDTRAITLKCLTEVSNLKIPQDND 271 (1023)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHHS----HHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH--HHhcchhHHHHHHHHHcCC----HHHHHHHHHHHHHHHccccCCchH
Confidence 4444443 3345666677777766654221 3456677788888 76653 668999999999988632 2
Q ss_pred hHHHHHHh--cccHHHH--------------HHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhc----cCcHH----
Q 008827 240 CCRSRCLS--LQVLKLV--------------VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN----ETIVI---- 295 (552)
Q Consensus 240 ~~~~~~~~--~~~l~~l--------------v~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~----~~~i~---- 295 (552)
.+...+.. .+.++.+ ...-.+.+.+....-+..+..+....... +.. .+.+.
T Consensus 272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~l----i~~~~~~~~~l~~~l~ 347 (1023)
T 4hat_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRAL----LESDESLRELLLNAHQ 347 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGG----GTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH----HhCCcchhHHHHHHHH
Confidence 12211111 0111111 11112234566666777776665542211 111 11222
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcC---CchhH---HHHHhhCcHHHHHHhhcCCC---------------------H
Q 008827 296 PLVRLLDDTSTAVQVAALGAISNIVVD---FTTRR---STFIRLGGVKLLVQLSKSMD---------------------S 348 (552)
Q Consensus 296 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~---~~~~~---~~~~~~g~i~~L~~ll~~~~---------------------~ 348 (552)
.|+..-..++.++-..+...=..++.+ .+..+ ..+. ...++.+++-+..+. .
T Consensus 348 ~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~-~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~ 426 (1023)
T 4hat_C 348 YLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDT 426 (1023)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH-HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGG
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHH
Confidence 333333456777766665433333321 00011 0111 135555555554432 0
Q ss_pred -----HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC--CChhHHHHHHHHHHHhhcCCcch-HHHHHhhcC
Q 008827 349 -----TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINS-VEYIFAEDG 420 (552)
Q Consensus 349 -----~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~ 420 (552)
..| ..+..+.++.. + ..+ ...++.+.+.+.+ .++...+.++++++.++.+-.+. ....+..
T Consensus 427 ~~~f~~~R-d~L~~l~~l~~---~----~~~-~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~-- 495 (1023)
T 4hat_C 427 IQLYKSER-EVLVYLTHLNV---I----DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT-- 495 (1023)
T ss_dssp HHHHHHHH-HHHHHHHHHCH---H----HHH-HHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--
T ss_pred HHHHHHHH-HHHHHHhccCH---H----HHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--
Confidence 111 22222222211 1 111 1123333334443 68999999999999999775432 2222222
Q ss_pred chHHHHHHHhcc----cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHH
Q 008827 421 IILDAVGRQLRI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 496 (552)
Q Consensus 421 ~~~~~l~~~L~~----~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~ 496 (552)
+++.|..++.+ .++..++..++|+++.++.--..+- ..+ ..++..|...+.++++.++..|++++.
T Consensus 496 -vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~L--------~~vl~~L~~~l~~~~~~v~~~A~~al~ 565 (1023)
T 4hat_C 496 -VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL--------RTVILKLFEFMHETHEGVQDMACDTFI 565 (1023)
T ss_dssp -HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HHH--------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HHH--------HHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 67777777653 1234456678899998765111111 122 355667788888888999999999999
Q ss_pred hhcCCCCCCCHHHHHHHHH------CCcHHHHH----hhhcCCCccHHHHHHHHHHHHhhh
Q 008827 497 NLTCSSSPGSSGRLVKLHD------AGIVSHVK----NMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 497 ~l~~~~~~~~~~~~~~l~~------~g~~~~L~----~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
+++. +....+.. .-.++.++ +...+-.......+..|+..+.+.
T Consensus 566 ~l~~-------~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 566 KIVQ-------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHH-------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHH-------HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9994 12223321 11233333 333333445556777777777654
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.28 E-value=0.00072 Score=76.49 Aligned_cols=455 Identities=11% Similarity=0.075 Sum_probs=238.0
Q ss_pred CCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccH-
Q 008827 47 NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTL- 123 (552)
Q Consensus 47 ~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l- 123 (552)
+++...+..|-..|....+. -+....+..+|.+ +..+|..|+..|.+....+ +..+-. .....+
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~---------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~---W~~l~~-~~~~~ir 93 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRK---WKLLPN-DHRIGIR 93 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHS---------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT---GGGSCH-HHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhC---------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh---CccCCH-HHHHHHH
Confidence 45555666666666655432 2455566666753 5689999999998865321 111100 001111
Q ss_pred HHHHHHHhc----C-----ChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCC
Q 008827 124 SCIIEIVKD----R-----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEK 194 (552)
Q Consensus 124 ~~l~~ll~~----~-----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~ 194 (552)
..++..+.+ + ++.+|...+.++..++...-. ..+.+.++.|+++++.++..+..+..+|..+..+-
T Consensus 94 ~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-----~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev 168 (1049)
T 3m1i_C 94 NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-----QNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEV 168 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-----TTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-----ccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 223443332 1 467888889999998875311 12457889999998743334445555665554221
Q ss_pred H--------HHH-----HHHHH--hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH-hc
Q 008827 195 E--------DMQ-----KLAFE--VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-AL 258 (552)
Q Consensus 195 ~--------~~~-----~~~~~--~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~-~L 258 (552)
. ..+ ..+.+ ...++.+...+... .++.++..++.++.+....-+. ..+.+...++.+.+ ++
T Consensus 169 ~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM 245 (1049)
T ss_dssp HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC
Confidence 0 000 11111 11123334455544 3467888999999876553321 22455667777663 33
Q ss_pred CCCCHHHHHHHHHHHHHhhccc-ccc--c-chhhhc--cCcHHHHHH-hh-------------cCCCHHHHHHHHHHHHH
Q 008827 259 AHDSSDVRSAACMCLRSVSRSI-KNL--S-AGSFMN--ETIVIPLVR-LL-------------DDTSTAVQVAALGAISN 318 (552)
Q Consensus 259 ~~~~~~v~~~a~~~L~~ls~~~-~~~--~-~~~~~~--~~~i~~Lv~-lL-------------~~~~~~v~~~a~~aL~n 318 (552)
.+++++..|+.+|..+.... +.. + ..++.. .+++..+.. ++ .+.+.+.....+..+..
T Consensus 246 --~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 246 --TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp --HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred --CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence 37899999999999886541 111 0 000000 112222211 11 12344544444444443
Q ss_pred hhcC-------CchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc----cCC-hHhHHHHHHhhcHHHHHhhh
Q 008827 319 IVVD-------FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF----LAE-DKCKEEIFMELTASLLASLI 386 (552)
Q Consensus 319 l~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~----~~~-~~~~~~i~~~~~~~~l~~ll 386 (552)
+... .+..+..+ ...++.++.....++..+...++.....++. ... ...-..++.. .++.++..+
T Consensus 324 ~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~-Lv~~ll~~m 400 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ-LRLVIIENM 400 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHH-HHHHHHHTC
T ss_pred HHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHhc
Confidence 3221 11111111 2456666666677788888888877777654 111 1111122222 234444444
Q ss_pred cCC-------------------Ch---hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCchhHHHHHH
Q 008827 387 CDP-------------------EP---SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGM 443 (552)
Q Consensus 387 ~~~-------------------~~---~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~ 443 (552)
.-+ +. .....+..+|..++.-.++ .++.. +++.+.+.+.+ +.++..++.++
T Consensus 401 ~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~---v~~~l~~~l~~~~~~W~~~eaal 474 (1049)
T 3m1i_C 401 VRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEI---MISKLARQIDGSEWSWHNINTLS 474 (1049)
T ss_dssp CCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHH---HHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHH---HHHHHHHHhCCCCCCHHHHHHHH
Confidence 211 10 1222344555555532221 11111 34555555543 35788999999
Q ss_pred HHHHhhcCCChhhHH-HHHHHhhHhhhhhhHHHHHHhhcC-----CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC
Q 008827 444 YVLGNVATGKESHKE-AVMDQLLLRAENKAQSCIIKFLQS-----NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG 517 (552)
Q Consensus 444 ~~L~~la~~~~~~~~-~i~~~~~~~~~~~~v~~Lv~lL~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g 517 (552)
++++.++.+...... .++ ..+++.+..+... +.+.++..++|+++.++. -...+.+.+ ..
T Consensus 475 ~algsia~~~~~~~e~~~l--------~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~----~~~~~~~~l--~~ 540 (1049)
T 3m1i_C 475 WAIGSISGTMSEDTEKRFV--------VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPR----FLKAHWNFL--RT 540 (1049)
T ss_dssp HHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHH----HHHHCHHHH--HH
T ss_pred HHHHHHhcccCchhhHHHH--------HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH----HHHhHHHHH--HH
Confidence 999999865432211 222 2344555554332 344566679999998873 001111222 13
Q ss_pred cHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 518 IVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 518 ~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
+++.|.+.+.++++.|+..|+.|+.+|.+.
T Consensus 541 vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 466677777888899999999999998864
No 91
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.21 E-value=0.0003 Score=69.61 Aligned_cols=320 Identities=15% Similarity=0.147 Sum_probs=191.6
Q ss_pred cccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChh---hHHHH-HhcCch-HHHHH-hhcCC-HHHHHHHHHHHHHHhc
Q 008827 34 QEENMEFLLSLLNN-ESENVSGLGASIISHSCKTSL---EQKLL-FDAGVL-KRLTS-LLGGS-LIQRDASLESIATIFK 105 (552)
Q Consensus 34 ~~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~---~~~~l-~~~g~i-~~L~~-lL~~~-~~v~~~al~~L~~l~~ 105 (552)
+......++.+|+. ..+++.+++...+..+...+. .+..+ .+.... ..+.. .+..+ .-....+..++..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 45567889999984 557788888888888766554 34333 333222 11222 22233 3455666666666653
Q ss_pred CChhhhhhhccccCCccHH--HHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHH--hHHHHHHHhcC---C--
Q 008827 106 NNPEVVSQFVGPDTGRTLS--CIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKT--KLINNLLELLD---D-- 175 (552)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~--~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~--g~i~~Lv~ll~---~-- 175 (552)
........+ ...+. .++..+++ ++...+..++.+|..+..... .+..+... +.+|.+++++. +
T Consensus 155 ~~~~~~~~l-----~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~--~R~~f~~~~~~~~~~l~~il~~~~~~~ 227 (480)
T 1ho8_A 155 NGLHNVKLV-----EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE--YRDVIWLHEKKFMPTLFKILQRATDSQ 227 (480)
T ss_dssp TTTCCHHHH-----HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH--HHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred cCCccHhHH-----HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh--HHHHHHHcccchhHHHHHHHHHhhccc
Confidence 322211000 11222 34555555 345667889999998877432 23333322 35777765443 0
Q ss_pred ---------C----CchhchHHHHHHHhhcCCHHHHHHHHHhCcH--HHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh-
Q 008827 176 ---------P----GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV--DKLYNHLQKGSLHPRRFEGILLALADMCSKLE- 239 (552)
Q Consensus 176 ---------~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~- 239 (552)
. -.++.++..+++-++-..+ ....+...+.. +.|++.++... -.++..-++.+|.|+...++
T Consensus 228 ~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~-KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 228 LATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSST
T ss_pred cccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcccch
Confidence 1 1246788888887775544 33444444433 67777777763 46677778889999987542
Q ss_pred ---hH-HHHHHhcccHHHHHHhcCC---CCHHHHHHHHHHHHHhhcccc---------------cccch-----------
Q 008827 240 ---CC-RSRCLSLQVLKLVVDALAH---DSSDVRSAACMCLRSVSRSIK---------------NLSAG----------- 286 (552)
Q Consensus 240 ---~~-~~~~~~~~~l~~lv~~L~~---~~~~v~~~a~~~L~~ls~~~~---------------~~~~~----------- 286 (552)
.. ...++..++ +.+++.|.. .++++....-.....|..... .+++.
T Consensus 306 ~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~E 384 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSD 384 (480)
T ss_dssp THHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHH
T ss_pred hhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHH
Confidence 11 222333445 445555543 355554433332222221100 01100
Q ss_pred ---hhhc--cCcHHHHHHhhcC----------CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHH
Q 008827 287 ---SFMN--ETIVIPLVRLLDD----------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR 351 (552)
Q Consensus 287 ---~~~~--~~~i~~Lv~lL~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 351 (552)
+|.+ ..++..|+++|++ .|+.+..-||.=|+.++..++..|..+-+.|+=..+++++.++|++||
T Consensus 385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 1232 3467889999973 378899999999999999999888777778998899999999999999
Q ss_pred HHHHHHHHHhcc
Q 008827 352 LNALRALRNLIF 363 (552)
Q Consensus 352 ~~a~~aL~~l~~ 363 (552)
.+|+.++..+..
T Consensus 465 ~~AL~avQklm~ 476 (480)
T 1ho8_A 465 YEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 92
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.13 E-value=0.0013 Score=73.17 Aligned_cols=439 Identities=11% Similarity=0.094 Sum_probs=228.8
Q ss_pred ccchHHHHHhhcCC---CCcchHHHHHHHHhhcC--Chh----hHHHHHhcCchHHHHHhh--cCCHHHHHHHHHHHHHH
Q 008827 35 EENMEFLLSLLNNE---SENVSGLGASIISHSCK--TSL----EQKLLFDAGVLKRLTSLL--GGSLIQRDASLESIATI 103 (552)
Q Consensus 35 ~~~i~~l~~ll~~~---~~~~~~~a~~~l~~~~~--~~~----~~~~l~~~g~i~~L~~lL--~~~~~v~~~al~~L~~l 103 (552)
+++......+|..+ ++.++..++.+|.+.-+ ..+ .+ ...+...++.+...- .....++.+...++..+
T Consensus 39 p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~-~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l 117 (980)
T 3ibv_A 39 STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL-QMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLL 117 (980)
T ss_dssp TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH-HHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 45667777788653 57899999999987543 122 22 223333444444311 11346888888888887
Q ss_pred hcC-ChhhhhhhccccCCccHHHHHHHHhcCCh-hhHHHHHHHHHHHhhhCCC----c-----c-----hhhhhHH---h
Q 008827 104 FKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFA-RTRLLASLCLIVIRNASPC----Y-----L-----QDVGIKT---K 164 (552)
Q Consensus 104 ~~~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~vr~~A~~~L~~l~~~~~~----~-----~-----~~~~~~~---g 164 (552)
+.. .+..| .+.++.++.++++++. .......+.|..+..--.. . . ++.+... .
T Consensus 118 ~~~~~p~~W--------p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~ 189 (980)
T 3ibv_A 118 FLQLYPSNW--------NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD 189 (980)
T ss_dssp HHHHTTTTC--------TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHhCcccC--------chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence 643 23433 4567778887775444 2333444444433221000 0 0 1111111 1
Q ss_pred HHHHHHHhcC-----CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827 165 LINNLLELLD-----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 239 (552)
Q Consensus 165 ~i~~Lv~ll~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 239 (552)
+.+....+|. .++.+...+..++......-+- ..+++.+.++.+.++|.. +.++..|+.+|..+.....
T Consensus 190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~----~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI----EELRCAACETMTEIVNKKM 263 (980)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC----hHHHHHHHHHHHHHHHcCC
Confidence 1333333332 3345666777777766654222 335556667777776654 6789999999999876432
Q ss_pred --hHHHHHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhcccccc---c--------ch-hhhccCcHHHHHHhhcC
Q 008827 240 --CCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNL---S--------AG-SFMNETIVIPLVRLLDD 303 (552)
Q Consensus 240 --~~~~~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~~~~---~--------~~-~~~~~~~i~~Lv~lL~~ 303 (552)
+.+..++..=.+..++..+. +++.++.+..++.+..++...-.. . .. .-.-.++++.++..+.+
T Consensus 264 ~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~ 343 (980)
T 3ibv_A 264 KPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD 343 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC
T ss_pred ChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC
Confidence 22222222211122222222 467777666665554442210000 0 00 00123678888888988
Q ss_pred CCHHHHHHHHHHHHHhhcCC---------chhHHHHHhhCcHHHHHHhhcCC------C----------HHHHHHHHHHH
Q 008827 304 TSTAVQVAALGAISNIVVDF---------TTRRSTFIRLGGVKLLVQLSKSM------D----------STIRLNALRAL 358 (552)
Q Consensus 304 ~~~~v~~~a~~aL~nl~~~~---------~~~~~~~~~~g~i~~L~~ll~~~------~----------~~v~~~a~~aL 358 (552)
++.++-..+...+..+.... ......++ ...++.+++-++-+ + .+.|.... ++
T Consensus 344 ~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l 421 (980)
T 3ibv_A 344 DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IF 421 (980)
T ss_dssp SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HH
Confidence 88888877766665544211 01111111 13444444444321 1 12344333 33
Q ss_pred HHhcccCChHhHHHHHHhhcHHHHHhhhc---CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc----CchHHHHHHHhc
Q 008827 359 RNLIFLAEDKCKEEIFMELTASLLASLIC---DPEPSVQEQALALVRNLVDGRINSVEYIFAED----GIILDAVGRQLR 431 (552)
Q Consensus 359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~----~~~~~~l~~~L~ 431 (552)
...+....++.-...+-....+.+.+.+. +.++...+.++.+++.++++.+.....+ .+. ..+++.+..+++
T Consensus 422 ~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~~ll~~ll~ 500 (980)
T 3ibv_A 422 QDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLSQILALVTT 500 (980)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHHHHHHHHHh
Confidence 32222112211111000112223333332 3468899999999999998754322111 111 125677777665
Q ss_pred c----cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHH--hhcCCChhHHHHHHHHHHhhcC
Q 008827 432 I----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK--FLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 432 ~----~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~--lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
+ .+++.|+..++++++.++.-...+.+ .+ ..+++.++. -+.+++..++..|+.++.+++.
T Consensus 501 s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~-~l--------~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 501 SQVCRHPHPLVQLLYMEILVRYASFFDYESA-AI--------PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp SSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT-TH--------HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhcCch-hH--------HHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 2 36789999999999998863221111 11 233345555 5567788999999999999985
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.05 E-value=0.00059 Score=74.49 Aligned_cols=285 Identities=13% Similarity=0.144 Sum_probs=184.4
Q ss_pred hchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh---hHHHHHHhcccHHHHHH
Q 008827 180 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE---CCRSRCLSLQVLKLVVD 256 (552)
Q Consensus 180 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~~l~~lv~ 256 (552)
+..++..++.+...+.... ....+.+..|.+.+.+. .++ +.|+.++..+|.... ..--.+ .+.+|.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k-~~~---~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~ 102 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDK-KTA---ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICT 102 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSH-HHH---HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhcc-CCH---HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHH
Confidence 3455666666544321100 01113445555555443 122 899999999985331 111112 257899999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827 257 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGG 335 (552)
Q Consensus 257 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~ 335 (552)
...+....||.+|..++..+....+.. .-..++|.|+..|.+. .+..+..|+..+..++...+..- ...=...
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~-~~~~~~~ 176 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVNPV-----AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV-ALRMPEL 176 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSCGG-----GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH-HHhccch
Confidence 999999999999999988887664322 2257899999999754 69999999999999997543221 1222468
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 415 (552)
Q Consensus 336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 415 (552)
+|.+.+.+.+..++++..|..++..+|.-.++ ++ -+..+|.|++.+.+++. ...++..|+.-+.-.. .....
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n--~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~-v~~~~ 248 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDN--KD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAE-VTPAT 248 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC--TT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC-CCHHH
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHhcCCC--cc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee-ecchh
Confidence 89999999999999999999999888763221 10 02468889998988743 3334444443332211 11111
Q ss_pred HhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC--CChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-CChhHHHHHH
Q 008827 416 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT--GKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAV 492 (552)
Q Consensus 416 ~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~--~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-~~~~~~~~a~ 492 (552)
+. .+.|+|.+-|.. +...+++.++-++.||+. .++.....++ ...+|.+.+.... .+|++|.-|.
T Consensus 249 l~---~~~p~l~r~l~~-~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--------~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 249 LS---IMVPLLSRGLNE-RETGIKRKSAVIIDNMCKLVEDPQVIAPFL--------GKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp HH---HHHHHHHHHHTS-SSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------TTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred HH---HHHHHHHhhhcc-CcchhheeeEEEEcchhhhcCCHHHHhhhh--------hhhhhHHHHHhhccCCHHHHHHHH
Confidence 11 157888888876 778899999999999997 5554344443 3444555554443 6899998887
Q ss_pred HHHHhh
Q 008827 493 WAVLNL 498 (552)
Q Consensus 493 ~~l~~l 498 (552)
.++..|
T Consensus 317 ~a~~~l 322 (986)
T 2iw3_A 317 RALKTL 322 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.97 E-value=0.002 Score=70.37 Aligned_cols=293 Identities=10% Similarity=0.056 Sum_probs=192.0
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC
Q 008827 224 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD 303 (552)
Q Consensus 224 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 303 (552)
+..+...++.+...+... .....+++..+.+.+.+.... +.|+.++..++..........-+--+.+|.++..+.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d 106 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN 106 (986)
T ss_dssp HHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC
Confidence 455566666664432111 112236788888888876555 8999999999865322110001222567888888889
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827 304 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382 (552)
Q Consensus 304 ~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l 382 (552)
....|+.+|..++..++...++.. + ...+|.|+..+.+.. =..+..|+..+..++... ++.- ...-...+|.+
T Consensus 107 k~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~-~~~~~~~~p~~ 180 (986)
T 2iw3_A 107 KDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQV-ALRMPELIPVL 180 (986)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHH-HHhccchhcch
Confidence 899999999888877766544432 1 467899999887654 568889999999998643 3211 11112468888
Q ss_pred HhhhcCCChhHHHHHHHHHHHhhcC--CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHH
Q 008827 383 ASLICDPEPSVQEQALALVRNLVDG--RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAV 460 (552)
Q Consensus 383 ~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i 460 (552)
.+.+.+..++|..+|..++..+|.- +.| ++. .++.|++-+.+ | +-...+...|+.-+--.+ .-...
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~-------~~~~~~~~~~~-p--~~~~~~~~~l~~~tfv~~-v~~~~ 248 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVDNKD-IER-------FIPSLIQCIAD-P--TEVPETVHLLGATTFVAE-VTPAT 248 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-TGG-------GHHHHHHHHHC-T--THHHHHHHHHTTCCCCSC-CCHHH
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCCCcc-hhh-------hHHHHHHHhcC-h--hhhHHHHHHhhcCeeEee-ecchh
Confidence 9999999999999999999998842 221 111 46777777765 3 335556677765443221 11111
Q ss_pred HHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc-CCCccHHHHHHH
Q 008827 461 MDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVKLRVKT 539 (552)
Q Consensus 461 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~a~~ 539 (552)
+ .=.+|.|.+-|......++..++-.+-|++.-. ..+.-...+. -..+|.+.+..+ -.+|++|+.+..
T Consensus 249 l--------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv--~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~ 317 (986)
T 2iw3_A 249 L--------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV--EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLR 317 (986)
T ss_dssp H--------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC--CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHH
T ss_pred H--------HHHHHHHHhhhccCcchhheeeEEEEcchhhhc--CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHH
Confidence 1 234588888898889999999999999999632 2333334442 335677777654 368999999999
Q ss_pred HHHHHhhhcC
Q 008827 540 ALEQFNSFDD 549 (552)
Q Consensus 540 al~~~~~~~~ 549 (552)
|+..+.+.++
T Consensus 318 a~~~l~~~~~ 327 (986)
T 2iw3_A 318 ALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 9999877643
No 95
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.95 E-value=0.014 Score=64.87 Aligned_cols=423 Identities=10% Similarity=0.041 Sum_probs=223.1
Q ss_pred CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcC---ChhhHHHHHHHHHHHhhhCCCc-c--hhhhhH
Q 008827 89 SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR---FARTRLLASLCLIVIRNASPCY-L--QDVGIK 162 (552)
Q Consensus 89 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~vr~~A~~~L~~l~~~~~~~-~--~~~~~~ 162 (552)
+...|..|-..|..+-+. ++.+ .....++.++ ++.+|..|+..|.+....-+.. . ....++
T Consensus 21 d~~~r~~A~~~L~~~q~s-p~aw------------~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr 87 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-STGW------------KICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR 87 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-TTHH------------HHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-hhHH------------HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH
Confidence 457788888877775433 3332 2334455443 7899999999999877732222 0 223444
Q ss_pred HhHHHHHHHhcC--CCCchhchHHHHHHHhhcCC-HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC--
Q 008827 163 TKLINNLLELLD--DPGRVGDEASFAFSSLIAEK-EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-- 237 (552)
Q Consensus 163 ~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-- 237 (552)
..+++.+.+.-. ++..++.+.+.+++.++... +.. =.+.++.++..+..++. .......++.|..+..+
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-----Wp~~i~~l~~~~~~~~~-~~~~~~~LriL~~i~EEv~ 161 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-----WNDFFASLQGVIAASSQ-SEFSNFYLKVLLSIGDEIA 161 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-----CchHHHHHHHHhcCCCh-hHHHHHHHHHHHHhHHHHH
Confidence 556666666221 34568889999888886421 100 02456667776655421 12334445555533221
Q ss_pred ------Ch--hH-----HHHHHhc---ccHHHHHHhc----CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHH
Q 008827 238 ------LE--CC-----RSRCLSL---QVLKLVVDAL----AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPL 297 (552)
Q Consensus 238 ------~~--~~-----~~~~~~~---~~l~~lv~~L----~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~L 297 (552)
++ .. ++.+.+. .+.+.+..+| ...++.++..+..++.......+. ..+...+.++.+
T Consensus 162 ~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~---~~i~~~~ll~~l 238 (980)
T 3ibv_A 162 DSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI---NLIVNEPCMNLL 238 (980)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH---HHHHCHHHHHHH
T ss_pred hcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH---HhhhcchHHHHH
Confidence 00 01 1222221 1233344444 346888889999999888664222 225667888889
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHHhhCcHHHHHHhhc--CCCHHHHHHHHHHHHHhc------ccCC-
Q 008827 298 VRLLDDTSTAVQVAALGAISNIVVDFT--TRRSTFIRLGGVKLLVQLSK--SMDSTIRLNALRALRNLI------FLAE- 366 (552)
Q Consensus 298 v~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l~------~~~~- 366 (552)
+++|.+ ++++..|+.+|..+..... ..+..+++.=.+...+..+. ..|.+..+.-+..+..++ ...+
T Consensus 239 ~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~ 316 (980)
T 3ibv_A 239 YSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPS 316 (980)
T ss_dssp HHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 988865 7999999999999876443 22223332211122222222 356665544333332221 1111
Q ss_pred ---hHhHHHHHH--hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC----------------------------------
Q 008827 367 ---DKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDG---------------------------------- 407 (552)
Q Consensus 367 ---~~~~~~i~~--~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~---------------------------------- 407 (552)
++.+.+... ...++.++..+.+++.++-..++..+..+...
T Consensus 317 ~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d 396 (980)
T 3ibv_A 317 ELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDES 396 (980)
T ss_dssp --CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence 122222211 24566777777766665554443333322210
Q ss_pred ---Cc----chHHH-------------HHhhcC--chHH----HHHHHhcc------cCchhHHHHHHHHHHhhcCCChh
Q 008827 408 ---RI----NSVEY-------------IFAEDG--IILD----AVGRQLRI------ASKAEIEIQGMYVLGNVATGKES 455 (552)
Q Consensus 408 ---~~----~~~~~-------------i~~~~~--~~~~----~l~~~L~~------~~~~~v~~~a~~~L~~la~~~~~ 455 (552)
+. +..+. ++.-.| .+++ .+...+.+ +.++...+.++++|+.++.+...
T Consensus 397 ~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~ 476 (980)
T 3ibv_A 397 QEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRG 476 (980)
T ss_dssp CCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCS
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccc
Confidence 00 00000 000000 1233 33333321 24577888999999998876432
Q ss_pred hHHHHHH--HhhHhhhhhhHHHHHHhhc-----CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh---
Q 008827 456 HKEAVMD--QLLLRAENKAQSCIIKFLQ-----SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM--- 525 (552)
Q Consensus 456 ~~~~i~~--~~~~~~~~~~v~~Lv~lL~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l--- 525 (552)
....+.+ .. ...+++.+..+++ .+++.+|..++++++.++.- -.. ....++++.+.
T Consensus 477 ~~~~~~~~~~~----lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~-~~~---------~~~~l~~~L~~ll~ 542 (980)
T 3ibv_A 477 PDAFFNEVDKS----PTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASF-FDY---------ESAAIPALIEYFVG 542 (980)
T ss_dssp GGGTBCSSSCC----BCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG-GGT---------CCTTHHHHHHHHTS
T ss_pred cccccCcccch----hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH-Hhc---------CchhHHHHHHHHhc
Confidence 1110000 00 0134456666665 67899999999999999730 001 11334444443
Q ss_pred ---hcCCCccHHHHHHHHHHHHhhhcC
Q 008827 526 ---VNDPCLDVKLRVKTALEQFNSFDD 549 (552)
Q Consensus 526 ---l~~~~~~v~~~a~~al~~~~~~~~ 549 (552)
+.++++.|+.+|..|+.+|-+...
T Consensus 543 ~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 543 PRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp TTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred cccccCCChhHHHHHHHHHHHHHHHhh
Confidence 335678899999999999977643
No 96
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.93 E-value=0.017 Score=64.36 Aligned_cols=466 Identities=12% Similarity=0.087 Sum_probs=231.0
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhc-C-CHHHHHHHHHHHHHHhcC-----Ch
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-G-SLIQRDASLESIATIFKN-----NP 108 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~-~-~~~v~~~al~~L~~l~~~-----~~ 108 (552)
..+..++..+.+++...+..|-..|...-+. .++......+|. + ++.+|.-|+..|.+.... ++
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s---------p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~ 86 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC---------TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcC---------ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 4455555555555545666666666555433 234455556665 2 678999999999876532 11
Q ss_pred hhhhhhccccCCccHHHHHHHHhcC-----ChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchH
Q 008827 109 EVVSQFVGPDTGRTLSCIIEIVKDR-----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEA 183 (552)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~ll~~~-----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a 183 (552)
+....+. ...+..+.....++ .+.++..-+.++..++...-- ..+...++.++++++.++......
T Consensus 87 e~~~~Ir----~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-----~~Wp~~l~dL~~~l~~~~~~~~~~ 157 (1023)
T 4hat_C 87 DHRIGIR----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-----QNWPEFIPELIGSSSSSVNVCENN 157 (1023)
T ss_dssp HHHHHHH----HHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-----TTCTTHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-----hhchHHHHHHHHHhcCCHHHHHHH
Confidence 1111111 11122222222221 345666677778877765310 124678889999987554434444
Q ss_pred HHHHHHhhcC---------CHH----HHHHHHH--hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhc
Q 008827 184 SFAFSSLIAE---------KED----MQKLAFE--VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 248 (552)
Q Consensus 184 ~~~L~~l~~~---------~~~----~~~~~~~--~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~ 248 (552)
...|..+..+ ... .+..+.+ ...++.+..+|..+ ..+.+...++.++......-+ -..+.+.
T Consensus 158 L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~--i~~i~~~ 234 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIP--YRYIYET 234 (1023)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSC--THHHHSS
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCC--HHHhcch
Confidence 4555444322 111 1111111 11233444555544 356778889999998876422 2446677
Q ss_pred ccHHHHH-HhcCCCCHHHHHHHHHHHHHhhcc-c-ccc--cchhhh--ccCcHHHH--------------HHhhcCCCHH
Q 008827 249 QVLKLVV-DALAHDSSDVRSAACMCLRSVSRS-I-KNL--SAGSFM--NETIVIPL--------------VRLLDDTSTA 307 (552)
Q Consensus 249 ~~l~~lv-~~L~~~~~~v~~~a~~~L~~ls~~-~-~~~--~~~~~~--~~~~i~~L--------------v~lL~~~~~~ 307 (552)
+.++.+. .++. ++.++..|+.||..+... . ... ....+. -.+.++.+ +.--.+.|.+
T Consensus 235 ~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e 312 (1023)
T 4hat_C 235 NILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQS 312 (1023)
T ss_dssp SHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHH
T ss_pred hHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHH
Confidence 8899998 8874 678999999999998752 1 110 000000 00111111 1111223455
Q ss_pred HHHHHHHHHHHhhcCC-------chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc--CChHhH---HHHHH
Q 008827 308 VQVAALGAISNIVVDF-------TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL--AEDKCK---EEIFM 375 (552)
Q Consensus 308 v~~~a~~aL~nl~~~~-------~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~---~~i~~ 375 (552)
....-+..+..+.... +..+. ++ ..++..++.....++.++-..++..=..++.. .++..+ ..+..
T Consensus 313 ~~~~l~~l~~~~~e~~~~li~~~~~~~~-~l-~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~ 390 (1023)
T 4hat_C 313 FLQDLAMFLTTYLARNRALLESDESLRE-LL-LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS 390 (1023)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTSCGGGHH-HH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcchhH-HH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 5555555554333211 11111 11 12233455554556666655544332222210 111011 01111
Q ss_pred hhcHHHHHhhhcCCC-------------------hh--HHHHHH-HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-
Q 008827 376 ELTASLLASLICDPE-------------------PS--VQEQAL-ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI- 432 (552)
Q Consensus 376 ~~~~~~l~~ll~~~~-------------------~~--v~~~a~-~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~- 432 (552)
..++.+++-+.-|+ .+ ..-... .+|..++.-..+ .++.. .++.+.+.+.+
T Consensus 391 -~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~---~~~~~---~~~~l~~~l~~~ 463 (1023)
T 4hat_C 391 -QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEI---MISKLARQIDGS 463 (1023)
T ss_dssp -HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH---HHHHH---HHHHHHHHHSST
T ss_pred -HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH---HHHHH---HHHHHHHHhcCC
Confidence 12333443333221 01 111011 222222211110 01110 23444444443
Q ss_pred cCchhHHHHHHHHHHhhcCCChhh-HHHHHHHhhHhhhhhhHHHHHHhhcC-----CChhHHHHHHHHHHhhcCCCCCCC
Q 008827 433 ASKAEIEIQGMYVLGNVATGKESH-KEAVMDQLLLRAENKAQSCIIKFLQS-----NDSRLRTAAVWAVLNLTCSSSPGS 506 (552)
Q Consensus 433 ~~~~~v~~~a~~~L~~la~~~~~~-~~~i~~~~~~~~~~~~v~~Lv~lL~~-----~~~~~~~~a~~~l~~l~~~~~~~~ 506 (552)
+.++..++.++|+++.++.+.... -...+ ..+++.|+.++.+ +...++..++|+++.++. =.
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l--------~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~----wl 531 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFV--------VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPR----FL 531 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHH----HH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchhHHHHH--------HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHH----HH
Confidence 257899999999999999865432 22333 3567788888863 334566778899999873 00
Q ss_pred HHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 507 SGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 507 ~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
..+.+.| ..++..|.+-+.++++.|++.|++|+.++.+.
T Consensus 532 ~~~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 532 KAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 1111111 12244455555667788999999999998764
No 97
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.91 E-value=0.00066 Score=63.87 Aligned_cols=153 Identities=15% Similarity=0.212 Sum_probs=116.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH-hhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHH-
Q 008827 254 VVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFI- 331 (552)
Q Consensus 254 lv~~L~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~- 331 (552)
+++-|.+++.+.++.+..-|.. ++.. ...... |+..+++..|+.+..+.+.+.+..+..|+.++.. +......++
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~E-FI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs 199 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPE-FVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHH-HHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHH-HHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhC
Confidence 4455556667777777777777 5544 445555 8999999999999999999999999999999996 444444444
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh----------cHHHHHhhhc---CCChhHHHHHH
Q 008827 332 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL----------TASLLASLIC---DPEPSVQEQAL 398 (552)
Q Consensus 332 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~----------~~~~l~~ll~---~~~~~v~~~a~ 398 (552)
....|..+..++.+.+..+...|+..|..++..++. ....+.++- .++.++.+|. +.|.+++.+++
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 456889999999988899999999999999876532 333333322 2788999997 78999999999
Q ss_pred HHHHHhhcCCcc
Q 008827 399 ALVRNLVDGRIN 410 (552)
Q Consensus 399 ~~L~~l~~~~~~ 410 (552)
.++..+..+.++
T Consensus 279 tLIN~lL~~apd 290 (339)
T 3dad_A 279 TLINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHHCSS
T ss_pred HHHHHHHhcCCC
Confidence 999888766553
No 98
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.90 E-value=0.0012 Score=62.10 Aligned_cols=191 Identities=17% Similarity=0.160 Sum_probs=134.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHH
Q 008827 295 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF 374 (552)
Q Consensus 295 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~ 374 (552)
..++.-|.+.+.+.+..+...|..+..........+++.+|+..|+......+..++..++.|+.++-.+. +--..++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v--~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV--DGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH--HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc--ccccchh
Confidence 34555666677788899999999855455677788999999999999999999999999999999986532 1222333
Q ss_pred -HhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc--------CchHHHHHHHhc--ccCchhHHHHHH
Q 008827 375 -MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED--------GIILDAVGRQLR--IASKAEIEIQGM 443 (552)
Q Consensus 375 -~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--------~~~~~~l~~~L~--~~~~~~v~~~a~ 443 (552)
+...+..+..++.+.+..|...|+.+|..++..++.....+.++- ...++.++.+|+ ++.+.+++.+++
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 556788999999999999999999999999877665544443321 124678888887 237889999988
Q ss_pred HHHHhhcCCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHH
Q 008827 444 YVLGNVATGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTA 490 (552)
Q Consensus 444 ~~L~~la~~~~--~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~ 490 (552)
..|..+..+.+ +.+..+.+. +. ..|+-..+.+.+++. +++++..
T Consensus 279 tLIN~lL~~apd~d~~~di~d~-Le--~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDA-LE--QQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHH-HH--HTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHH-HH--HccHHHHHHHHHhccCCCHHHHHH
Confidence 87776655333 223344331 11 245545666666654 5555544
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.55 E-value=0.13 Score=57.25 Aligned_cols=461 Identities=10% Similarity=0.103 Sum_probs=228.5
Q ss_pred ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCC-----
Q 008827 35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNN----- 107 (552)
Q Consensus 35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~----- 107 (552)
...+..++..+.+++...+..|-..|...-+.++ +......+|.+ ++.+|.-|+..|.+....+
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 3456667766666776777778888877765433 33444555653 5789999999998865421
Q ss_pred hhhhhhhccccCCccHHHHHHHHhc-----CChhhHHHHHHHHHHHhhhC-CCcchhhhhHHhHHHHHHHhcCCCCchhc
Q 008827 108 PEVVSQFVGPDTGRTLSCIIEIVKD-----RFARTRLLASLCLIVIRNAS-PCYLQDVGIKTKLINNLLELLDDPGRVGD 181 (552)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~vr~~A~~~L~~l~~~~-~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~ 181 (552)
++....+. ...+..+.....+ .++.++..-+.++..++... +. .+...++-++++++.++....
T Consensus 98 ~e~~~~LR----~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~------~Wp~fi~dLv~~~~~~~~~~~ 167 (1073)
T 3gjx_A 98 RNQCEGIK----KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK------HWPTFISDIVGASRTSESLCQ 167 (1073)
T ss_dssp HHHHHHHH----HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh------hccHHHHHHHHHhCCCHHHHH
Confidence 11111111 1111222222222 24566666777777777643 11 234577777777753333333
Q ss_pred hHHHHHHHhhcC---CH----------HHHHHHHHh--CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q 008827 182 EASFAFSSLIAE---KE----------DMQKLAFEV--NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL 246 (552)
Q Consensus 182 ~a~~~L~~l~~~---~~----------~~~~~~~~~--~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 246 (552)
....+|..+..+ .. ..+..+.+. ..++.+..+|... .++.+...++.++......-+- ..++
T Consensus 168 ~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~i--~~i~ 244 (1073)
T 3gjx_A 168 NNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIPL--GYIF 244 (1073)
T ss_dssp HHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT--HHHH
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcCH--HHhc
Confidence 444555555432 10 011112211 1122333444444 3577778888999988765332 3566
Q ss_pred hcccHHHHH-HhcCCCCHHHHHHHHHHHHHhhccc-ccccchhhh--ccCcHHHHHHhh-------------cCCCHHHH
Q 008827 247 SLQVLKLVV-DALAHDSSDVRSAACMCLRSVSRSI-KNLSAGSFM--NETIVIPLVRLL-------------DDTSTAVQ 309 (552)
Q Consensus 247 ~~~~l~~lv-~~L~~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~--~~~~i~~Lv~lL-------------~~~~~~v~ 309 (552)
+.+.++.++ .+| +++.+|..|+.||..+.... +..... +. -.+++..+-.++ .+.|++..
T Consensus 245 ~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~-~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~ 321 (1073)
T 3gjx_A 245 ETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQ-FETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFI 321 (1073)
T ss_dssp SSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHH-HHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHH
T ss_pred cchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHH
Confidence 778888874 666 46789999999999986531 111111 10 011121111222 12233444
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhhC---------cHHHHHHhhcCCCHHHHHHHHHHHH----HhcccC------Ch---
Q 008827 310 VAALGAISNIVVDFTTRRSTFIRLG---------GVKLLVQLSKSMDSTIRLNALRALR----NLIFLA------ED--- 367 (552)
Q Consensus 310 ~~a~~aL~nl~~~~~~~~~~~~~~g---------~i~~L~~ll~~~~~~v~~~a~~aL~----~l~~~~------~~--- 367 (552)
..-+..+..+...+ . .+++.+ ++..++.....++.++-..+...=. .+.... ++
T Consensus 322 ~~l~~~f~~~~e~~---~-~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~ 397 (1073)
T 3gjx_A 322 QNLSLFLCTFLKEH---G-QLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLS 397 (1073)
T ss_dssp HHHHHHHHHHHHHH---H-HHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTT
T ss_pred HHHHHHHHHHHHHH---H-HHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 44444444433211 1 122221 3344555556677776665543321 222111 00
Q ss_pred -------HhHHHHHHh---hcHHHHHhhhcCCC--------------------h-----hHHHHHHHHHHHhhcCCcchH
Q 008827 368 -------KCKEEIFME---LTASLLASLICDPE--------------------P-----SVQEQALALVRNLVDGRINSV 412 (552)
Q Consensus 368 -------~~~~~i~~~---~~~~~l~~ll~~~~--------------------~-----~v~~~a~~~L~~l~~~~~~~~ 412 (552)
..+..+... .....++.-+.-|+ . +....++..+.++. ++..
T Consensus 398 ~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~---~~~~ 474 (1073)
T 3gjx_A 398 GSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLD---YVDT 474 (1073)
T ss_dssp SSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHC---HHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCC---HHHH
Confidence 011111110 11222222222121 0 12222333333322 1111
Q ss_pred HHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHhhcCCChhh-HHHHHHHhhHhhhhhhHHHHHHhhcCC---C--h
Q 008827 413 EYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESH-KEAVMDQLLLRAENKAQSCIIKFLQSN---D--S 485 (552)
Q Consensus 413 ~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~la~~~~~~-~~~i~~~~~~~~~~~~v~~Lv~lL~~~---~--~ 485 (552)
..+ +++.+.+.+.+ ..++...+.++|+++.++..-... -+.++ ..+++.|+.+...+ + .
T Consensus 475 ~~i------~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L--------p~vi~~Ll~L~e~~~~kd~k~ 540 (1073)
T 3gjx_A 475 EII------MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL--------VTVIKDLLGLCEQKRGKDNKA 540 (1073)
T ss_dssp HHH------HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHHHHSCSHHHHH
T ss_pred HHH------HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH--------HHHHHHHhcccccccccchhH
Confidence 111 23444444443 246889999999999998532211 12233 35667777777554 2 2
Q ss_pred hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827 486 RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547 (552)
Q Consensus 486 ~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~ 547 (552)
.++...+|+++++.. =...+.+.| ..++..|.+.+.++++.|++.|+.|+..|.+-
T Consensus 541 ~vas~i~~vlgrY~~----wl~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 541 IIASNIMYIVGQYPR----FLRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHHHHHHHHHHCHH----HHHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHH----HHHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 355556689988862 011111222 12345555666788999999999999888654
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0082 Score=56.41 Aligned_cols=187 Identities=10% Similarity=0.084 Sum_probs=123.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCchhH--HHHH--hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH----
Q 008827 297 LVRLLDDTSTAVQVAALGAISNIVVDFTTRR--STFI--RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK---- 368 (552)
Q Consensus 297 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~--~~~~--~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~---- 368 (552)
+-.-|.+.++..|.+|...+..+........ .... -....+.+-..+.+.|..++..++.++..++......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 6678889999999999999988775433211 1111 0134455667888999999999999999887543221
Q ss_pred hHHHHHHhhcHHHHHh-hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827 369 CKEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG 447 (552)
Q Consensus 369 ~~~~i~~~~~~~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~ 447 (552)
......-...++.|+. .+.+..+.++..+..++..++...... .. +++.+...+.+ .+|.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-------~~e~l~~~l~~-Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-------SVELVIPFFEK-KLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-------HHHHHGGGGGC-SCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-------HHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 1122223345666665 578888999999988887776432110 11 34555566666 89999999998888
Q ss_pred hhcC--CChh-hHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827 448 NVAT--GKES-HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 448 ~la~--~~~~-~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~ 500 (552)
.+.. |... .....+ ..+++.+..++.+.|+.||.+|..++..+-.
T Consensus 165 ~~l~~fg~~~~~~k~~l--------~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL--------PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHH--------HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHH--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 7654 1110 122222 2345678889999999999999999987753
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.01 Score=55.75 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=124.0
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc--chhhh-ccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS--AGSFM-NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR 326 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~--~~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 326 (552)
-+| +-+-|.+.+|..|..+...+..+-....... ...+. -....+.+-..+.|.+..++..++.++..++......
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 355 6688999999999999998887654322111 00000 1234555667888999999999999999887543211
Q ss_pred ---H--HHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHH
Q 008827 327 ---R--STFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL 400 (552)
Q Consensus 327 ---~--~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~ 400 (552)
+ ....-...++.|++- +.+....++..+..++..++....+ . ...++.+...+.+.++.++..++..
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~-----~~~~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--I-----TQSVELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--S-----HHHHHHHGGGGGCSCHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--H-----HHHHHHHHHHHhccCHHHHHHHHHH
Confidence 1 111223567778764 7888899999998888777653221 0 1235667778899999999999988
Q ss_pred HHHhhcC--Cc-chHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827 401 VRNLVDG--RI-NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 451 (552)
Q Consensus 401 L~~l~~~--~~-~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~ 451 (552)
|..+... .. -.....+.. +++.+..+|.+ ++++||..|..+++.+-.
T Consensus 163 l~~~l~~fg~~~~~~k~~l~~---i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFLPE---LLKHVPQLAGH-GDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHHHH---HGGGHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCCchhHHHH---HHHHHHHHHhC-CcHHHHHHHHHHHHHHHH
Confidence 8877532 11 011222211 44566677777 999999999998876653
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.27 E-value=0.0053 Score=61.32 Aligned_cols=254 Identities=14% Similarity=0.069 Sum_probs=151.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHH
Q 008827 124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFE 203 (552)
Q Consensus 124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 203 (552)
..++.-+-++.+++|.-|+..|..+.+..... .|.. ..... .-|++.+.-++
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N~--DLAvRLLCVLA------------ 228 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVDS--KLFSKIYEILV------------ 228 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCCT--THHHHHHHHHH------------
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------ccccH--HHHHHHHHHHH------------
Confidence 34455566899999999999999988764321 0100 10001 22333332222
Q ss_pred hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc
Q 008827 204 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL 283 (552)
Q Consensus 204 ~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~ 283 (552)
+.++.++..+. .-..+||.+..+|+.+ ..-++- ..++..++..+..+.|++|..+.-.|..+. +-+
T Consensus 229 ---LDRFGDYVSDq-VVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL 294 (800)
T 3oc3_A 229 ---TDKFNDFVDDR-TVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFV 294 (800)
T ss_dssp ---HBCCBBCSSSS-CBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGC
T ss_pred ---hccccccccCe-eeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHH
Confidence 11222333333 2245899999999998 543321 345666666668889999999999999881 111
Q ss_pred cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCC-HH-HHHHHHHHHHHh
Q 008827 284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-ST-IRLNALRALRNL 361 (552)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~-v~~~a~~aL~~l 361 (552)
. . -.++++.++..|++.|.+|+..|+.+|.-++ .. ... ..++..+...|.+-+ -. -....+..|+.+
T Consensus 295 ~-~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p-~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL 363 (800)
T 3oc3_A 295 E-D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT-DSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKI 363 (800)
T ss_dssp C-C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS-STH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHH
T ss_pred H-H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch-hhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Confidence 1 1 2577888999999999999999999999888 22 211 234555665555421 11 112233344554
Q ss_pred cccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHH
Q 008827 362 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ 441 (552)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~ 441 (552)
+.... ... .....+|.|..+++++-+.|+..++.++..+.. .+ ++.++-+-+--+++++|+..
T Consensus 364 ~s~p~-~a~---~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~--~~-----------~LRLIFQNILLE~neeIl~l 426 (800)
T 3oc3_A 364 YRENP-ELS---IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE--ES-----------IDFLVAEVVLIEEKDEIREM 426 (800)
T ss_dssp HHHCT-TCC---CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC--HH-----------HHHHHHHHHHHCSCHHHHHH
T ss_pred HcCCc-ccc---cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh--hh-----------HHHHHHHHHHhCCcHHHHHH
Confidence 43221 000 012578899999999999999999999988772 11 33333332222267777777
Q ss_pred HHHHHH
Q 008827 442 GMYVLG 447 (552)
Q Consensus 442 a~~~L~ 447 (552)
+..+-.
T Consensus 427 S~~VWk 432 (800)
T 3oc3_A 427 AIKLLK 432 (800)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.20 E-value=0.00031 Score=64.29 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=25.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHH
Q 008827 254 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGA 315 (552)
Q Consensus 254 lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~a 315 (552)
+..+++++++.||..++..+ + .+.|..+++++++.||..++..
T Consensus 79 l~~L~~D~~~~VR~~aA~~L-------~------------~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL-------P------------REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------C------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHccCcCHHHHHHHHHHC-------C------------HHHHHHHHcCCCHHHHHHHHHh
Confidence 45566677777777766431 0 0235556666777777666663
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.02 E-value=0.023 Score=52.27 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=117.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh--cHHHHHhhhcCCChhHHHHHHHHHHHhhcC----Ccch
Q 008827 338 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL--TASLLASLICDPEPSVQEQALALVRNLVDG----RINS 411 (552)
Q Consensus 338 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~--~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~ 411 (552)
.+...+-+.+..-+..++..|...... . .+.++... .+..+.--+.+.++.+...++.+|..+... ....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~-~---~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADT-S---PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH-C---HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhh-C---hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445556666777778888777765432 2 22332211 233333234577999999999998887532 1111
Q ss_pred HHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHH
Q 008827 412 VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA 491 (552)
Q Consensus 412 ~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a 491 (552)
..+- .+.++|.|+..+.+ +++.++..+-.++..+.. +.. ...+.+.+..-+++.|...|.++
T Consensus 126 ~~~e---a~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~--------v~~------~~~v~~~l~~g~ksKN~R~R~e~ 187 (266)
T 2of3_A 126 SQEE---VSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSD--------VVG------PLKMTPMLLDALKSKNARQRSEC 187 (266)
T ss_dssp CHHH---HHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHH--------HHC------HHHHHHHHHHGGGCSCHHHHHHH
T ss_pred hHHH---HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHH--------HCC------HHHHHHHHHHHHccCCHHHHHHH
Confidence 1111 11267888888876 778899888877765542 111 13455778888899999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHCCcH---HHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827 492 VWAVLNLTCSSSPGSSGRLVKLHDAGIV---SHVKNMVNDPCLDVKLRVKTALEQFNS 546 (552)
Q Consensus 492 ~~~l~~l~~~~~~~~~~~~~~l~~~g~~---~~L~~ll~~~~~~v~~~a~~al~~~~~ 546 (552)
+..+..+... .|.. ...++ +.+.+++.|++..||+.|..++..+..
T Consensus 188 l~~l~~li~~--~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 188 LLVIEYYITN--AGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHHHH--HCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999852 2443 13467 999999999999999999988876544
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.00 E-value=0.024 Score=52.11 Aligned_cols=170 Identities=11% Similarity=0.032 Sum_probs=111.6
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHhcc-cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc--cccchhhhccCcHHHH
Q 008827 221 PRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLRSVSRSIK--NLSAGSFMNETIVIPL 297 (552)
Q Consensus 221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~-~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~--~~~~~~~~~~~~i~~L 297 (552)
.+.+..++..|......+++. .+.... +++-+.-.+.+.+..+...++..|..+..... ..+.......-++|.|
T Consensus 60 ~k~~~~ale~L~~~l~~~~~~--~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L 137 (266)
T 2of3_A 60 FKQHLAALDSLVRLADTSPRS--LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL 137 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH--HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhChHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 566666776666654322211 111111 22322323447899999999888887632211 1111101125678999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh
Q 008827 298 VRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL 377 (552)
Q Consensus 298 v~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~ 377 (552)
+.-+.++...+|..+-..+..+..-+++. .+.+.+.+-+++.|..+|..++..+..+....+.. -..
T Consensus 138 veKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~------~~~ 204 (266)
T 2of3_A 138 LLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS------PLK 204 (266)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG------GGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC------ccc
Confidence 99999999999999998887776433332 35677888889999999999999888875432211 123
Q ss_pred cH---HHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 378 TA---SLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 378 ~~---~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
.+ +.+..++.++|..|+..|+.++..+.
T Consensus 205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57 89999999999999999998876554
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.80 E-value=0.029 Score=50.01 Aligned_cols=145 Identities=18% Similarity=0.078 Sum_probs=106.1
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CCchhH
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVV-DFTTRR 327 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~-~~~~~~ 327 (552)
.++....+.+++..++|..|+.+|..+ .. ....++.+-. +-.+++..|++.++.++..++. ..+.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~----------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SK----------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TT----------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cC----------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 466677788888899999999988877 21 1245666666 5568899999999999998874 2221
Q ss_pred HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 328 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 328 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
..++.+...+.++++.+|..|+..+.-.+.. +..+ .--...++.+-.+..+++..||....+.|+.++..
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 2677888999999999999998776544331 1000 00122567777788899999999999999999999
Q ss_pred CcchHHHHHh
Q 008827 408 RINSVEYIFA 417 (552)
Q Consensus 408 ~~~~~~~i~~ 417 (552)
+|+-+...++
T Consensus 209 ~Pd~V~~~~~ 218 (240)
T 3l9t_A 209 FPDLVKIELK 218 (240)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9875544443
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.73 E-value=0.02 Score=57.35 Aligned_cols=244 Identities=16% Similarity=0.147 Sum_probs=150.8
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc--cchhhhccCcHHHHHHhh--c-------C-CCHHHHHHHHHHHH
Q 008827 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL--SAGSFMNETIVIPLVRLL--D-------D-TSTAVQVAALGAIS 317 (552)
Q Consensus 250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~--~~~~~~~~~~i~~Lv~lL--~-------~-~~~~v~~~a~~aL~ 317 (552)
+...++.-|-++.|++|..|+.+|+.+-+....- +.. -......-.|+-++ + | .-..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~-~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQI-RVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCC-CCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceec-cccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 6777888888999999999999999997654321 101 11112222232222 1 1 12479999999999
Q ss_pred HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHH
Q 008827 318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA 397 (552)
Q Consensus 318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a 397 (552)
.+ ..-++. ..++..++..+..+.=++|..++-.|..+..-.. . =.++++.++..|.+.|.+|+..|
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----D--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----C--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----H--HHHHHHHHHhhcCCcccHHHHHH
Confidence 88 544432 3556666666677777899999999998822111 1 13457788888999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh-HHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHH
Q 008827 398 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE-IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 476 (552)
Q Consensus 398 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~-v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~L 476 (552)
+.+|..++ .++.+.. ++..+...|.+..+-. -....+..|+.+...+.... .+...+|.|
T Consensus 320 AetLiPIA--~p~~l~~-------LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~----------~dp~LVPRL 380 (800)
T 3oc3_A 320 AELLCHFP--ITDSLDL-------VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS----------IPPERLKDI 380 (800)
T ss_dssp HHHHTTSC--CSSTHHH-------HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC----------CCSGGGGGT
T ss_pred HHHhhhhc--chhhHHH-------HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc----------cChHHHHHH
Confidence 99999988 4444443 3344444444321111 11222333333332111000 013567899
Q ss_pred HHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHH
Q 008827 477 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541 (552)
Q Consensus 477 v~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al 541 (552)
-.+++++-+.||.++..++..+.. + ..-. -.++.++-++++++++.+..+.
T Consensus 381 ~PFLRHtITSVR~AVL~TL~tfL~----~---~~LR-------LIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 381 FPCFTSPVPEVRTSILNMVKNLSE----E---SIDF-------LVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGGTCSSHHHHHHHHHHTTTCCC----H---HHHH-------HHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhhhcCCcHHHHHHHHHHHHHHHh----h---hHHH-------HHHHHHHhCCcHHHHHHHHHHH
Confidence 999999999999999999988772 1 1111 1344455556778777665554
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.57 E-value=1.4 Score=49.25 Aligned_cols=427 Identities=11% Similarity=0.049 Sum_probs=212.9
Q ss_pred ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhcC------CHHHHHHHHHHHHH
Q 008827 35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIAT 102 (552)
Q Consensus 35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~~------~~~v~~~al~~L~~ 102 (552)
+++.+....+|. +.++.++..|+.+|.+..+. +.....-.+...++.+...-.+ +..++.+...++..
T Consensus 59 p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~ 138 (1073)
T 3gjx_A 59 PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQ 138 (1073)
T ss_dssp SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHH
Confidence 345566666665 45678999999999986542 2222233344445555544322 24556666677777
Q ss_pred HhcC-ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc------------chhhhhH--HhHHH
Q 008827 103 IFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY------------LQDVGIK--TKLIN 167 (552)
Q Consensus 103 l~~~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~------------~~~~~~~--~g~i~ 167 (552)
++.. .++.+ .+.++.++.++++ ++.........|..+...-... .++.+.. ..+++
T Consensus 139 I~k~~~P~~W--------p~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ 209 (1073)
T 3gjx_A 139 ILKQEWPKHW--------PTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQ 209 (1073)
T ss_dssp HHHHHTTTTC--------TTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhChhhc--------cHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7643 23333 4567777777764 3445566777777665531100 0111111 12333
Q ss_pred HHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHH-HhhhcCCCChhhHHHHHHHHHHhhcCC-hhHHH
Q 008827 168 NLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSKL-ECCRS 243 (552)
Q Consensus 168 ~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~~ 243 (552)
.+..++. .++++...+..++....+.-+- ..+++.+.++.++ .+|. ++..+..|+.+|..+...+ +++..
T Consensus 210 ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~L~~~~L~----~~~~r~aA~dcL~eIv~k~~~~~~~ 283 (1073)
T 3gjx_A 210 LCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKLISTLIYKFLN----VPMFRNVSLKCLTEIAGVSVSQYEE 283 (1073)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHHHTSS----SHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHHHHHHHhcC----ChHHHHHHHHHHHHHHhccccchHH
Confidence 3334443 2334555566777777654332 3456677777773 5443 3678999999999987642 22222
Q ss_pred HHHh--cccHHHHHHhcC-------------CCCHHHHHHHHHHHHHhhcccccccchhhhcc-C-------cHHHHHHh
Q 008827 244 RCLS--LQVLKLVVDALA-------------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE-T-------IVIPLVRL 300 (552)
Q Consensus 244 ~~~~--~~~l~~lv~~L~-------------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~-~-------~i~~Lv~l 300 (552)
.+.. .+.+..+..++. +.+.+....-+..+..+...... . +... + ++..++.+
T Consensus 284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~---l-Ie~~p~~~~~l~~~l~~ll~~ 359 (1073)
T 3gjx_A 284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQ---L-LEKRLNLREALMEALHYMLLV 359 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHH---H-HHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH---H-HhcCccchHHHHHHHHHHHHH
Confidence 2211 122222222221 22234445555555555433211 1 1111 1 22223444
Q ss_pred hcCCCHHHHHHHHHHHH----HhhcCC------c-----------hhHHHHH---hhCcHHHHHHhhcCCC---------
Q 008827 301 LDDTSTAVQVAALGAIS----NIVVDF------T-----------TRRSTFI---RLGGVKLLVQLSKSMD--------- 347 (552)
Q Consensus 301 L~~~~~~v~~~a~~aL~----nl~~~~------~-----------~~~~~~~---~~g~i~~L~~ll~~~~--------- 347 (552)
-..++.++.+.+...=. .+.... . ..+..+. =......++.-+..+.
T Consensus 360 s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ 439 (1073)
T 3gjx_A 360 SEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQ 439 (1073)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSS
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCccc
Confidence 45678888777654322 222111 0 0111111 0123333343333221
Q ss_pred -----------HH-----HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHHHHhhcCCc
Q 008827 348 -----------ST-----IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRI 409 (552)
Q Consensus 348 -----------~~-----v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~ 409 (552)
.. +-..++..+.++. ++.-.. ..++.+.+.+. ..++...+.++|+++.++..-.
T Consensus 440 ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~----~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~ 511 (1073)
T 3gjx_A 440 GEVVREFMKDTDSINLYKNMRETLVYLTHLD----YVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMH 511 (1073)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHHHHHHHHC----HHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSC
T ss_pred chHHHHHHhhcchHHHHHHHHHHHHHHhcCC----HHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCC
Confidence 00 1111222222221 111111 12233333333 3468899999999999974432
Q ss_pred ch-HHHHHhhcCchHHHHHHHhcccC----chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCC
Q 008827 410 NS-VEYIFAEDGIILDAVGRQLRIAS----KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND 484 (552)
Q Consensus 410 ~~-~~~i~~~~~~~~~~l~~~L~~~~----~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~ 484 (552)
+. -+..+.. +++.|..+..... ++-+....+|+++.++.--..+- ..+ ..++..|.+.+.+++
T Consensus 512 ~~~E~~~Lp~---vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~-~~L--------~~vl~~L~~~m~~~~ 579 (1073)
T 3gjx_A 512 EEDEKRFLVT---VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW-KFL--------KTVVNKLFEFMHETH 579 (1073)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH--------HHHHHHHHHHTTCCS
T ss_pred cccccchHHH---HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH-HHH--------HHHHHHHHHHHhcCC
Confidence 21 2222222 6777777665421 23355557789988764111121 122 355677888889999
Q ss_pred hhHHHHHHHHHHhhcC
Q 008827 485 SRLRTAAVWAVLNLTC 500 (552)
Q Consensus 485 ~~~~~~a~~~l~~l~~ 500 (552)
+.++..|+.++..++.
T Consensus 580 ~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 580 DGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999985
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.55 E-value=0.31 Score=48.09 Aligned_cols=294 Identities=14% Similarity=0.094 Sum_probs=161.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827 81 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG 160 (552)
Q Consensus 81 ~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~ 160 (552)
.++..-+++.+.+.-|..-+....++.|+.. ..++..++.++.+++..||..|.+.|..+++. ++
T Consensus 33 ~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~--------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~----- 97 (507)
T 3u0r_A 33 VILDGVKGGTKEKRLAAQFIPKFFKHFPELA--------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN----- 97 (507)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHGGGCGGGH--------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC-----
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhH--------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh-----
Confidence 3455566788889999999999888877774 45778899999999999999999999999885 22
Q ss_pred hHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC-C
Q 008827 161 IKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-L 238 (552)
Q Consensus 161 ~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~ 238 (552)
-..+...|+++|+.+ +.-...+-.+|..+...++. +.+..+...+..+ +..+|+.++..|..=... .
T Consensus 98 -i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~--~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 98 -LPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG--EDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp -HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS--CHHHHHHHHHHHHHHGGGSC
T ss_pred -hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcc
Confidence 256888999999943 33344444566655544443 3455566556555 367888888877643321 1
Q ss_pred hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------CCCHHH
Q 008827 239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAV 308 (552)
Q Consensus 239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v 308 (552)
.+....-.+.-++..+-..|++-+..=-......|..+... + . ..+...|+.++. ..|++.
T Consensus 167 ~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~-~----t----~~g~qeLv~ii~eQa~L~~~f~~sD~e~ 237 (507)
T 3u0r_A 167 DEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSL-Q----T----VSGRQQLVELVAEQADLEQTFNPSDPDC 237 (507)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG-S----S----HHHHHHHHHHHHHHHTTTSCCCSSCHHH
T ss_pred hhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccc-c----C----chHHHHHHHHHHHHHhccCCCCCcCHHH
Confidence 11112223334556666666544321111112333322111 0 0 111233444432 135655
Q ss_pred HHHHHHHHHHh----hcCCchhH-HHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCC-hHhHHHHHHhhcHHH
Q 008827 309 QVAALGAISNI----VVDFTTRR-STFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE-DKCKEEIFMELTASL 381 (552)
Q Consensus 309 ~~~a~~aL~nl----~~~~~~~~-~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~i~~~~~~~~ 381 (552)
...-..++... +.+....+ -.++-..++|.+-.+-... .+..+..-+.+++.++.... .+.....+. .+++.
T Consensus 238 vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~ 316 (507)
T 3u0r_A 238 VDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDK 316 (507)
T ss_dssp HHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHH
Confidence 55554444433 22221111 1122234666444333322 22377888888888876544 222222222 23445
Q ss_pred HHhhhcCCC-------------h----hHHHHHHHHHHHhhcCCcc
Q 008827 382 LASLICDPE-------------P----SVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 382 l~~ll~~~~-------------~----~v~~~a~~~L~~l~~~~~~ 410 (552)
|...+-.+. + ...+..+.++..++...|+
T Consensus 317 L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~ 362 (507)
T 3u0r_A 317 LLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPD 362 (507)
T ss_dssp HHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTH
T ss_pred HHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChh
Confidence 555543211 1 2335566777777766554
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.49 E-value=0.0042 Score=56.69 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=14.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q 008827 252 KLVVDALAHDSSDVRSAACMC 272 (552)
Q Consensus 252 ~~lv~~L~~~~~~v~~~a~~~ 272 (552)
+.+..+++++++.||..++..
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 446667777788888777663
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.08 E-value=0.17 Score=49.91 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh
Q 008827 221 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 300 (552)
Q Consensus 221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l 300 (552)
++.+.-|...|...-.+-|+.... .+..++.+..+++..+|..|.+.|..+++. +.. ..+...|+++
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i-------~kiaDvL~Ql 108 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL-------PRVADILTQL 108 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-------hhHHHHHHHH
Confidence 344444444444444433433222 355566666677788999999999888876 322 3567889999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827 301 LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363 (552)
Q Consensus 301 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 363 (552)
|+.+++.-....-.+|..+....+ .+.+..+...+..+++.+|+.++..|..-..
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGG
T ss_pred HhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHh
Confidence 999888888888888887765433 2455566655555789999999998875443
No 112
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.93 E-value=0.59 Score=43.96 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=139.3
Q ss_pred CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc---chhhhhH-HhHHHHHHHhcCCCCchhchHHHHHHHhhcCCH
Q 008827 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY---LQDVGIK-TKLINNLLELLDDPGRVGDEASFAFSSLIAEKE 195 (552)
Q Consensus 120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~---~~~~~~~-~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~ 195 (552)
.+.+..++..+..-+.+.|..++.++.++.+..... ..+.+.. ..++..|++-- +++++-..+...|..++.+ +
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY-e~~diAl~~G~mLRecir~-e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY-ESPEIALNCGIMLRECIRH-E 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG-GSTTTHHHHHHHHHHHHTS-H
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh-ccchhHhHHHHHHHHHHHh-H
Confidence 456667777788888999999999888887754321 1111111 12333333322 4456655666666666654 4
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcc---cHHHHHHhcCCCCHHHHHHHHHH
Q 008827 196 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ---VLKLVVDALAHDSSDVRSAACMC 272 (552)
Q Consensus 196 ~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~---~l~~lv~~L~~~~~~v~~~a~~~ 272 (552)
...+.+...+.+..+.+++..++ -++...|..++..+-.........+.... +....-.+|.+++--.|..+.+.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~--FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMST--FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSS--HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCC--chHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 45566777778888888888764 67888888888888665555555555443 67778889999999999999999
Q ss_pred HHHhhcc--cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827 273 LRSVSRS--IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 273 L~~ls~~--~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 323 (552)
|+.+-.. .......++.+..-+..++.+|++.+..+|..|...+.-.+.++
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 9998543 23333443456677889999999999999999999998777654
No 113
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.89 E-value=0.26 Score=46.12 Aligned_cols=127 Identities=23% Similarity=0.265 Sum_probs=100.2
Q ss_pred HhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHH
Q 008827 233 DMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVA 311 (552)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~ 311 (552)
++..++.+..+-+++..++..+-..++-++.++..+.++.|...+.. ..++.. --...+|-+++.+. +++.++...
T Consensus 268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t--~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKT--PLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTS--CCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhc--cccccchHHHHHhccCCCcceEEe
Confidence 44456666778889999999999999999999999999999999887 445432 23567888888886 889999999
Q ss_pred HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-------C-------HHHHHHHHHHHHHhc
Q 008827 312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-------D-------STIRLNALRALRNLI 362 (552)
Q Consensus 312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~-------~~v~~~a~~aL~~l~ 362 (552)
..+.|+|.+.+..+.++..+..|+++.|....... + ..+..++++++.|+.
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL 409 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL 409 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence 99999999999888898888899999988764331 1 234455666776653
No 114
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.72 E-value=3 Score=47.56 Aligned_cols=220 Identities=13% Similarity=0.051 Sum_probs=113.4
Q ss_pred CCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHHhcCChh-------hhhhhccccCCc
Q 008827 49 SENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPE-------VVSQFVGPDTGR 121 (552)
Q Consensus 49 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~~~v~~~al~~L~~l~~~~~~-------~~~~~~~~~~~~ 121 (552)
...++...+.+++.+.+..-...+ -..++.|++++++++..++.++.+|..++++-.. ....+.+. -..
T Consensus 109 ~~~vr~kla~~la~Ia~~d~p~~W---p~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~-l~~ 184 (1204)
T 3a6p_A 109 ENHIKDALSRIVVEMIKREWPQHW---PDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQT-LTQ 184 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTTC---TTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHH-HHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcccc---hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH-HHH
Confidence 345667777777776532100000 1345677777777666678899999998754111 00000000 001
Q ss_pred cHHHHH----HHHhc-------------------CChhhHHHHHHHHHHHhhhCCCcchhhhhHH--hHHHHHHHhcCCC
Q 008827 122 TLSCII----EIVKD-------------------RFARTRLLASLCLIVIRNASPCYLQDVGIKT--KLINNLLELLDDP 176 (552)
Q Consensus 122 ~l~~l~----~ll~~-------------------~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~--g~i~~Lv~ll~~~ 176 (552)
.++.++ ..+++ ++..++..+..++.+....-+ ...+... ..++.+..++. +
T Consensus 185 ~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~---~~~i~~~~~~ll~~l~~~l~-~ 260 (1204)
T 3a6p_A 185 NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS---MSHITAENCKLLEILCLLLN-E 260 (1204)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC---HHHHHTTTSHHHHHHHHGGG-C
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC---HHHHHhccchHHHHHHHHcC-C
Confidence 122332 22322 233456667777765544322 1112222 37777777665 4
Q ss_pred CchhchHHHHHHHhhcCC--HHHHHHHHH---hCcHHHHHHhhhcC------CCChhhHHHHHHHHHHhhcCChhHHHHH
Q 008827 177 GRVGDEASFAFSSLIAEK--EDMQKLAFE---VNGVDKLYNHLQKG------SLHPRRFEGILLALADMCSKLECCRSRC 245 (552)
Q Consensus 177 ~~v~~~a~~~L~~l~~~~--~~~~~~~~~---~~~i~~L~~~L~~~------~~~~~~~~~a~~aL~~l~~~~~~~~~~~ 245 (552)
++++..|+.+|..+.+.. +..+..++. ...+..++...... +.+.+..+...+.+..++. .....+
T Consensus 261 ~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~ 337 (1204)
T 3a6p_A 261 QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALL 337 (1204)
T ss_dssp TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 678899999999998754 222111111 11233445443211 1123445555555555542 122111
Q ss_pred Hh----------cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827 246 LS----------LQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 279 (552)
Q Consensus 246 ~~----------~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~ 279 (552)
.+ .++++.++.++.+++..+-..++..-..+.+.
T Consensus 338 ~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 338 GADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred hccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11 24788889899888888877777655545554
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.71 E-value=1.5 Score=49.26 Aligned_cols=171 Identities=13% Similarity=0.157 Sum_probs=111.5
Q ss_pred cHHHHHHhcCC----CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh----hcCCCHHHHHHHHHHHHHhhc
Q 008827 250 VLKLVVDALAH----DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL----LDDTSTAVQVAALGAISNIVV 321 (552)
Q Consensus 250 ~l~~lv~~L~~----~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l----L~~~~~~v~~~a~~aL~nl~~ 321 (552)
.+..+..++++ .++.++..+..+++.|.+..-... . .+....++.+.+. +...+.+-+..++.+|+|+-.
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~-~-~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT-V-SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC-S-SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC-C-CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 45666667764 466788888888877764311000 0 1222335555544 456678888999999999864
Q ss_pred CCchhHHHHHhhCcHHHHHHhhcC-------CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh--cCCChh
Q 008827 322 DFTTRRSTFIRLGGVKLLVQLSKS-------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPS 392 (552)
Q Consensus 322 ~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll--~~~~~~ 392 (552)
+ +.++.|..++.. ....+|..|++||.++.... |+ .+-+.++++. ...+++
T Consensus 470 --p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~--------~v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 470 --P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR--------KVQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp --G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH--------HHHHHHHHHHHCTTSCHH
T ss_pred --h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH--------HHHHHHHHHhcCCCCChH
Confidence 2 356677777642 24678999999999997632 21 2344566766 457788
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827 393 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454 (552)
Q Consensus 393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~ 454 (552)
++..|+..|-. .+|+. . .+..+...+..+++.+|.......|.+++....
T Consensus 530 vRiaA~~~Lm~---t~P~~-~--------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 530 LRIRSCIVFFE---SKPSV-A--------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHHHHHH---TCCCH-H--------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHH---HCcCH-H--------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 99888777633 22321 0 456666777777888899999999999998554
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.43 E-value=0.54 Score=41.89 Aligned_cols=145 Identities=14% Similarity=0.002 Sum_probs=100.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh-hhcCCChhHHHHHHHHHHHhhc-CCcchH
Q 008827 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVD-GRINSV 412 (552)
Q Consensus 335 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~-ll~~~~~~v~~~a~~~L~~l~~-~~~~~~ 412 (552)
.++....+.+++...+|..|+..|+.+ . .. ...++.+.. +..+++..|++.+..+++.++. .+++.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~-~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-KD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-TS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c-Cc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence 345555677778889999999988877 2 11 124566666 6678899999999999999985 44432
Q ss_pred HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHH
Q 008827 413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV 492 (552)
Q Consensus 413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~ 492 (552)
.++.+.....+ +++.|+..+.-.+.-.+.. +... .- ...+++.|..+..+++.-||+..+
T Consensus 140 ---------~l~~~~~W~~d-~n~~VRR~Ase~~rpW~~~-~~~k-~d--------p~~ll~iL~~L~~D~s~yVrKSVa 199 (240)
T 3l9t_A 140 ---------ALPIIDEWLKS-SNLHTRRAATEGLRIWTNR-PYFK-EN--------PNEAIRRIADLKEDVSEYVRKSVG 199 (240)
T ss_dssp ---------THHHHHHHHHC-SSHHHHHHHHHHTCSGGGS-TTTT-TC--------HHHHHHHHHTTTTCSCHHHHHHHH
T ss_pred ---------HHHHHHHHhcC-CCHHHHHHHHHhhHHHhcc-chhh-cC--------HHHHHHHHHHhcCChHHHHHHHHH
Confidence 45666666666 8999999888876543322 1000 00 123456777788889999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHH
Q 008827 493 WAVLNLTCSSSPGSSGRLVKLHD 515 (552)
Q Consensus 493 ~~l~~l~~~~~~~~~~~~~~l~~ 515 (552)
|.|..++. ..++.+..+++
T Consensus 200 n~LrD~SK----~~Pd~V~~~~~ 218 (240)
T 3l9t_A 200 NALRDISK----KFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHT----TCHHHHHHHHH
T ss_pred HHHHHHhh----hCHHHHHHHHH
Confidence 99999995 45666555543
No 117
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.02 E-value=1.7 Score=40.83 Aligned_cols=178 Identities=11% Similarity=0.020 Sum_probs=105.9
Q ss_pred hHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHH----HHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827 164 KLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD----KLYNHLQKGSLHPRRFEGILLALADMCSKLE 239 (552)
Q Consensus 164 g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~----~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 239 (552)
..+..+.++++.+.+.+.-+...+.-++. .+.......+.+.-. .+...+... ..+..+.-++++++|+-. ++
T Consensus 103 ~~l~~l~kil~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~-~~p~n~ml~lR~l~NlF~-~~ 179 (304)
T 3ebb_A 103 QQLQILWKAINCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPK-GKPANQLLALRTFCNCFV-GQ 179 (304)
T ss_dssp HHHHHHHHHHTSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHGGG-SH
T ss_pred HHHHHHHHHHcCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCC-CChHHHHHHHHHHHHccC-Cc
Confidence 35667777776555556666665554443 343333333322222 233433332 235568889999999875 45
Q ss_pred hHHHHHHhc--ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHH
Q 008827 240 CCRSRCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAI 316 (552)
Q Consensus 240 ~~~~~~~~~--~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL 316 (552)
..+..+... .+++.+...+.+.+..+|.+++.++.|++-...+.+.. -....++..+..+++ ..|.|....+..||
T Consensus 180 ~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 180 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-EGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 566655542 46677777777789999999999999997542211111 011123444455554 46899999999999
Q ss_pred HHhhcCCchhHHHHHhhCcHHHHHHhhcC
Q 008827 317 SNIVVDFTTRRSTFIRLGGVKLLVQLSKS 345 (552)
Q Consensus 317 ~nl~~~~~~~~~~~~~~g~i~~L~~ll~~ 345 (552)
++++...+..++....-|+-..+-++...
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99997655544433334555544455554
No 118
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.75 E-value=2.8 Score=39.41 Aligned_cols=203 Identities=13% Similarity=0.111 Sum_probs=137.7
Q ss_pred HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccch---hhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG---SFMN-ETIVIPLVRLLDDTSTAVQVAALGAISN 318 (552)
Q Consensus 243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~---~~~~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 318 (552)
..+...+.+..++..|..=+.+.|+.++.++.++-+.....+.. ++.. ..++..|+... +++++-..+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHH
Confidence 34556688999999999999999999999999987653222111 1111 22222333333 344555555566665
Q ss_pred hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh---hcHHHHHhhhcCCChhHHH
Q 008827 319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME---LTASLLASLICDPEPSVQE 395 (552)
Q Consensus 319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~---~~~~~l~~ll~~~~~~v~~ 395 (552)
... ++...+.++..+.+-.+.++.+.++.++..-|..++..+... ....-.+.+.. .......+|+.+++.-.+.
T Consensus 150 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 150 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 554 555666788888888999999999999999999999887542 22222333332 2456677899999999999
Q ss_pred HHHHHHHHhhcCCcc---hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827 396 QALALVRNLVDGRIN---SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG 452 (552)
Q Consensus 396 ~a~~~L~~l~~~~~~---~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~ 452 (552)
+++.+|+.+...... ...|+-+.. -+..++.+|++ +...|+-.|.++.--+.+.
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~--nLkl~M~LL~d-~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPE--NLKLMMNLLRD-KSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHH--HHHHHHHHTTC-SCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHH--HHHHHHHHhcC-chhchhhhhhhheeeeeeC
Confidence 999999999865221 112222222 46777788888 8889999999988877663
No 119
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.15 E-value=3.1 Score=37.42 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=117.4
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHH-------hcCCCC--HHHH---HHHHHHHHHhhcccccccchh
Q 008827 221 PRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVD-------ALAHDS--SDVR---SAACMCLRSVSRSIKNLSAGS 287 (552)
Q Consensus 221 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~-------~L~~~~--~~v~---~~a~~~L~~ls~~~~~~~~~~ 287 (552)
|+.|+.|+..|+.=-..-++..-.+. ..|.+..+++ .+..++ ...- ..|...+..++.+ +..|..
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~- 92 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA- 92 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH-
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH-
Confidence 45688887666653322233333333 3354544433 222221 2222 3344455566665 667766
Q ss_pred hhccCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhhc-CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827 288 FMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVV-DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 361 (552)
|..+.+.-.|.-+|... .+-+|-...+.++.++. +.++....+.+.+.+|..++.++.+++-.+..|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 88888888888888633 35788899999999875 3455566788999999999999999999999999988887
Q ss_pred cccCCh-------HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 362 IFLAED-------KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 362 ~~~~~~-------~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
..+..- ..|-..+..-.-..+.++..++++.+....+++...++++
T Consensus 173 L~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 173 LLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 542110 0111111111122333556788999999999999888876
No 120
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.68 E-value=3 Score=37.47 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 384 (552)
Q Consensus 310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 384 (552)
.+|...+-.++. .++-+..+++++.--.|..++... .+.+|..+++.++.+....+++.-.-+++...+|..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 344444445554 566677889888777777777654 36799999999999998888888888888889999999
Q ss_pred hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHH
Q 008827 385 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE 458 (552)
Q Consensus 385 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~ 458 (552)
.+..++.--+.-|..++..+..++. ...++.... +.++..++..+...+++....+...+-..++. ++..++
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~-GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~ 230 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDT-GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRARE 230 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccch-hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHH
Confidence 9999999999999988888876532 333332211 01333333333344677777777777777775 343444
Q ss_pred HH
Q 008827 459 AV 460 (552)
Q Consensus 459 ~i 460 (552)
.+
T Consensus 231 aL 232 (268)
T 2fv2_A 231 AL 232 (268)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.35 E-value=4.3 Score=36.41 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=92.9
Q ss_pred CChhHHHHHHhcccHHHHHHhcCC----C-------CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC
Q 008827 237 KLECCRSRCLSLQVLKLVVDALAH----D-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 305 (552)
Q Consensus 237 ~~~~~~~~~~~~~~l~~lv~~L~~----~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 305 (552)
.+..+.+.+ ..+|+..|+.+|.. + +......+..||..+.......... +...+++..+...|.+++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~v-l~~~~~i~~l~~~L~s~~ 109 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV 109 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHH-HTSSSHHHHHHTTCCTTS
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHH-HcCcHHHHHHHHHhCCCC
Confidence 445666677 56787777777752 1 3466778888998886653222222 345678899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCc-hh-HHHHH----------hhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC-hHh--
Q 008827 306 TAVQVAALGAISNIVVDFT-TR-RSTFI----------RLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE-DKC-- 369 (552)
Q Consensus 306 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~-~~~-- 369 (552)
+.++..+...|.-++...+ .. -..++ +..-...+++.+++ .+.+.+..++..+..+....+ .+.
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~ 189 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV 189 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 9999999888877765432 12 22222 12244556666663 456666666665555554322 222
Q ss_pred --HHHHHHhhcHHHHHhhhcCCChhHHHH
Q 008827 370 --KEEIFMELTASLLASLICDPEPSVQEQ 396 (552)
Q Consensus 370 --~~~i~~~~~~~~l~~ll~~~~~~v~~~ 396 (552)
|.++...|..+.+-.+=...++++..+
T Consensus 190 ~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 190 HIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 334444454444443333445554443
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.31 E-value=0.95 Score=50.75 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=85.0
Q ss_pred cHHHHHHhhcC----CCHHHHHHHHHHHHHhccc---CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 335 GVKLLVQLSKS----MDSTIRLNALRALRNLIFL---AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 335 ~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~---~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
.+..+..++++ .++.++..++.+++++... ..+.|..+++. -..+.+.+.+...+.+-+.-++.+|+|+..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 44566666665 4677888888888877541 11112212111 123345555667778888889999999964
Q ss_pred CcchHHHHHhhcCchHHHHHHHhcc------cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh-
Q 008827 408 RINSVEYIFAEDGIILDAVGRQLRI------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL- 480 (552)
Q Consensus 408 ~~~~~~~i~~~~~~~~~~l~~~L~~------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL- 480 (552)
+. .++.+.+.+.. +....++..|+++|.+++...+.... +.+.++.
T Consensus 470 -p~-----------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~---------------~il~~i~~ 522 (1056)
T 1lsh_A 470 -PN-----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ---------------EIVLPIFL 522 (1056)
T ss_dssp -GG-----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH---------------HHHHHHHH
T ss_pred -hh-----------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH---------------HHHHHHhc
Confidence 32 45555555532 12346888999999999875442222 3455556
Q ss_pred -cCCChhHHHHHHHHHHhhc
Q 008827 481 -QSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 481 -~~~~~~~~~~a~~~l~~l~ 499 (552)
...++++|.+|+..|..-.
T Consensus 523 n~~e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 523 NVAIKSELRIRSCIVFFESK 542 (1056)
T ss_dssp CTTSCHHHHHHHHHHHHHTC
T ss_pred CCCCChHHHHHHHHHHHHHC
Confidence 3467899999998886544
No 123
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.30 E-value=6.4 Score=38.27 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=96.1
Q ss_pred CChhHHHHHHhcccHHHHHHhcC-----------CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC
Q 008827 237 KLECCRSRCLSLQVLKLVVDALA-----------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 305 (552)
Q Consensus 237 ~~~~~~~~~~~~~~l~~lv~~L~-----------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 305 (552)
.+..+.+.+. .+|+..|+..|. ..+...+..+..||+.+-......... +.....+..++..+.++.
T Consensus 98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~v-l~~~~~i~~l~~~L~s~~ 175 (383)
T 3eg5_B 98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV 175 (383)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHH-HTCSSHHHHHHHTCCTTS
T ss_pred CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHH-HcChHHHHHHHHHhCCCc
Confidence 4456666776 677888888774 123577888889999886653222222 455678999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCc-hh-HHHHH----------hhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC-hHhH-
Q 008827 306 TAVQVAALGAISNIVVDFT-TR-RSTFI----------RLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE-DKCK- 370 (552)
Q Consensus 306 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~-~~~~- 370 (552)
+.++..+...|.-++.... .. -..++ +..-...++..+.+ .+.+.+..++..+..+....+ .+.|
T Consensus 176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~ 255 (383)
T 3eg5_B 176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV 255 (383)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999988876443 21 22222 22345667777776 466777766666655554322 2233
Q ss_pred ---HHHHHhhcHHHHHhhhc-CCChhHHHH
Q 008827 371 ---EEIFMELTASLLASLIC-DPEPSVQEQ 396 (552)
Q Consensus 371 ---~~i~~~~~~~~l~~ll~-~~~~~v~~~ 396 (552)
.++...|..+.+-+ ++ ..++++..+
T Consensus 256 ~lR~ef~~~Gl~~il~~-lr~~~~~~L~~Q 284 (383)
T 3eg5_B 256 HIRSELMRLGLHQVLQE-LREIENEDMKVQ 284 (383)
T ss_dssp HHHHHHHHTTHHHHHHH-HTTSCCHHHHHH
T ss_pred HHHHHHHHCChHHHHHH-HhcCCChhHHHH
Confidence 34444454444444 54 345554443
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.72 E-value=7 Score=37.98 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=87.7
Q ss_pred hhccCcHHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCCchhHHHHHh-hCcHHHHHHhhcCCCHHHHHHHH
Q 008827 288 FMNETIVIPLVRLLD-----------DTSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNAL 355 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~-----------~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~ 355 (552)
|. .+++..|+.+|. ..+...+..+..+|..+.. +......++. .+.+..+...+.+.++.++..++
T Consensus 106 F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~al 183 (383)
T 3eg5_B 106 FG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 183 (383)
T ss_dssp HH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHH
T ss_pred HH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHH
Confidence 55 567788888774 2245788899999988884 4445555554 46889999999999999999999
Q ss_pred HHHHHhcccCChHh-HHHHHHh----------hcHHHHHhhhcC-CChhHHHHHHHHHHHhhcCCcc
Q 008827 356 RALRNLIFLAEDKC-KEEIFME----------LTASLLASLICD-PEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 356 ~aL~~l~~~~~~~~-~~~i~~~----------~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
..|..+|...+++. ...++++ .-+..++..+.+ .+.+.+..++.++..+..+.++
T Consensus 184 eLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 184 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence 99999887654332 4444443 235667777875 6788888888888888877554
No 125
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.64 E-value=4.9 Score=37.65 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=106.1
Q ss_pred cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchH----HHHHhhcC--CHHHHHHHHHHHHHHhcCChh
Q 008827 36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLK----RLTSLLGG--SLIQRDASLESIATIFKNNPE 109 (552)
Q Consensus 36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~----~L~~lL~~--~~~v~~~al~~L~~l~~~~~~ 109 (552)
..+..+.+++ +=..+.+.-+.+++......+.....+.+.+.-. .+...+.+ .+..+..++++++|+... +.
T Consensus 103 ~~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~ 180 (304)
T 3ebb_A 103 QQLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QA 180 (304)
T ss_dssp HHHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HH
T ss_pred HHHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-ch
Confidence 3556666666 3334566777777777665555444444432222 23344433 355688899999996544 34
Q ss_pred hhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHH
Q 008827 110 VVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAF 187 (552)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L 187 (552)
....+... ....+..+...+.+.+..+|.+++..+.|++...... .+.-....++..+..++. ++.+....+..+|
T Consensus 181 g~~~l~~~-~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~-~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMSQ-RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD-HNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHT-HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 43333221 1223344444555778999999999999998743110 011112335566666665 3456778888999
Q ss_pred HHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHH
Q 008827 188 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI 227 (552)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a 227 (552)
+++...+.+....+-.. ++...++-+.+.+.++++.+.+
T Consensus 259 GtL~~~~~~~~~lak~l-~~~~~v~~~~~~~~~~kv~~~~ 297 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSL-GVDSQIKKYSSVSEPAKVSECC 297 (304)
T ss_dssp HHHHTTCHHHHHHHHHT-THHHHGGGGGGCCSSHHHHHHH
T ss_pred HHHHhCChhHHHHHHHc-CHHHHHHHHHhCCCchhHHHHH
Confidence 99998776654433333 3444444344443445555543
No 126
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.50 E-value=6.7 Score=35.11 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=90.9
Q ss_pred HhCcHHHHHHhhhcC---------CCChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827 203 EVNGVDKLYNHLQKG---------SLHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSAACMC 272 (552)
Q Consensus 203 ~~~~i~~L~~~L~~~---------~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~~~~~v~~~a~~~ 272 (552)
..+|+..|+++|... ..+......++.+|..+.... .-...+. ..+.+..+...|.++++.+|..+...
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leL 119 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSH-HHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCCh-HHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence 356666666655431 112455678899999987543 3334444 45689999999999999999999998
Q ss_pred HHHhhccccc-c-cch---------hhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch------hHHHHHhhC
Q 008827 273 LRSVSRSIKN-L-SAG---------SFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT------RRSTFIRLG 334 (552)
Q Consensus 273 L~~ls~~~~~-~-~~~---------~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~------~~~~~~~~g 334 (552)
|..++...+. - ... ...+..-..++++.+. +.+.+.+.++...+-.+....++ .|..+...|
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 8888765331 1 111 0123334556788776 45667776666666555554433 233455566
Q ss_pred cHHHHHHhhcCCCHHHHH
Q 008827 335 GVKLLVQLSKSMDSTIRL 352 (552)
Q Consensus 335 ~i~~L~~ll~~~~~~v~~ 352 (552)
..+.+-.+-...++.+..
T Consensus 200 l~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 200 LHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHhccCCHHHHH
Confidence 666665554445555433
No 127
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=90.06 E-value=30 Score=39.36 Aligned_cols=269 Identities=14% Similarity=0.052 Sum_probs=140.9
Q ss_pred chHHHHHhh--cCCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhc----CCHHHHHHHHHHHHHHhc
Q 008827 37 NMEFLLSLL--NNESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLG----GSLIQRDASLESIATIFK 105 (552)
Q Consensus 37 ~i~~l~~ll--~~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~----~~~~v~~~al~~L~~l~~ 105 (552)
....+...| .+.+..++..|+.+|.+..+. ++......+...++.+...-. .+..+|.+...++..++.
T Consensus 46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~ 125 (1204)
T 3a6p_A 46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIK 125 (1204)
T ss_dssp THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH
Confidence 433444433 345677899999999886422 222222333334444443321 245788888888888775
Q ss_pred C-ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC--CCcc---hh-----hhhH--HhHHHHHHHh
Q 008827 106 N-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS--PCYL---QD-----VGIK--TKLINNLLEL 172 (552)
Q Consensus 106 ~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~--~~~~---~~-----~~~~--~g~i~~Lv~l 172 (552)
. .++.+ .+.++.++.++++ ++..+..+..+|..+.... .... +. .+.. ..+++.+..+
T Consensus 126 ~d~p~~W--------p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~i 196 (1204)
T 3a6p_A 126 REWPQHW--------PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNT 196 (1204)
T ss_dssp HHSTTTC--------TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HhCcccc--------hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 23333 4677888888876 5566778888888876531 0000 00 0000 1233333333
Q ss_pred cCCC--------------------CchhchHHHHHHHhhcCCHHHHHHHHHhC--cHHHHHHhhhcCCCChhhHHHHHHH
Q 008827 173 LDDP--------------------GRVGDEASFAFSSLIAEKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLA 230 (552)
Q Consensus 173 l~~~--------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~L~~~~~~~~~~~~a~~a 230 (552)
+.+. ..+...+..++.+....-+. ..+.+.. .++.++.++.. +.++..|+.+
T Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ec 270 (1204)
T 3a6p_A 197 LQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLNE----QELQLGAAEC 270 (1204)
T ss_dssp HHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGGC----TTTHHHHHHH
T ss_pred HHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcCC----HHHHHHHHHH
Confidence 3210 11333444455444332211 1223332 45666665442 5689999999
Q ss_pred HHHhhcCC--hhHHHHHHh---cccHHHHHHhcC--------CCCHHHHHHHHHHHHHhhcccccc-------cchhhhc
Q 008827 231 LADMCSKL--ECCRSRCLS---LQVLKLVVDALA--------HDSSDVRSAACMCLRSVSRSIKNL-------SAGSFMN 290 (552)
Q Consensus 231 L~~l~~~~--~~~~~~~~~---~~~l~~lv~~L~--------~~~~~v~~~a~~~L~~ls~~~~~~-------~~~~~~~ 290 (552)
|..+.... +..+..++. ..++..++.... +.+.++.+..+.++..+......+ ... -.-
T Consensus 271 L~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~-~~l 349 (1204)
T 3a6p_A 271 LLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETP-SNF 349 (1204)
T ss_dssp HHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCC-TTH
T ss_pred HHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCh-hHH
Confidence 99998743 222222221 112334444431 224567777777777765221100 000 012
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827 291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVV 321 (552)
Q Consensus 291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 321 (552)
.++++.++.+..+++..+-..+...-..+..
T Consensus 350 ~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 350 GKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 3678888888888888888777765554544
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.07 E-value=11 Score=36.78 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHhhcCCchhHHHHHh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh-HHHHHHh------
Q 008827 305 STAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC-KEEIFME------ 376 (552)
Q Consensus 305 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~i~~~------ 376 (552)
+...+..++.+|..++. .......++. .+++..+...+.++++.++..++..|..+|...+++. ...++++
T Consensus 71 d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 46778888999988874 4444445544 4688999999999999999999998888887554332 4444432
Q ss_pred ----hcHHHHHhhhc-CCChhHHHHHHHHHHHhhcCCcc
Q 008827 377 ----LTASLLASLIC-DPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 377 ----~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
.-+..++..+. +.+.+.+..++.++..+..+.++
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 188 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCC
Confidence 13445666665 56778888888888888877654
No 129
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=88.66 E-value=16 Score=34.38 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=93.4
Q ss_pred HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHH
Q 008827 318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA 397 (552)
Q Consensus 318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a 397 (552)
|+..+.++...-++...++..+......++.++.......|-..+...
T Consensus 268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak-------------------------------- 315 (619)
T 3c2g_A 268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK-------------------------------- 315 (619)
T ss_dssp HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG--------------------------------
T ss_pred HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH--------------------------------
Confidence 454455566666777777777777777777776666665554443211
Q ss_pred HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHH
Q 008827 398 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII 477 (552)
Q Consensus 398 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv 477 (552)
.+|...-. + .++.+.+.+.-+++++|..+..+.|+|..+......+..+. .++++.|.
T Consensus 316 -----sL~~t~L~-------e---~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~-------~nAI~LLh 373 (619)
T 3c2g_A 316 -----ALAKTPLE-------N---ILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIR-------SNAIFLLH 373 (619)
T ss_dssp -----GGGTSCCT-------T---HHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHH-------TTHHHHHH
T ss_pred -----HHhhcccc-------c---cchHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhc-------cCcHHHHH
Confidence 12211110 0 56777776766688889999999999999877655555554 68888877
Q ss_pred HhhcC-------CChhHHHHHHHHHHhhc---------CC-C------CCC--CHHHHHHHHHCCcHHHHHhhh
Q 008827 478 KFLQS-------NDSRLRTAAVWAVLNLT---------CS-S------SPG--SSGRLVKLHDAGIVSHVKNMV 526 (552)
Q Consensus 478 ~lL~~-------~~~~~~~~a~~~l~~l~---------~~-~------~~~--~~~~~~~l~~~g~~~~L~~ll 526 (552)
..+.. .+..-|+-||..++|-. |- . .-| .+++..++.+..++..|...+
T Consensus 374 ~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCL 447 (619)
T 3c2g_A 374 TIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCL 447 (619)
T ss_dssp HHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHH
T ss_pred HHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 76542 23344555666665532 21 1 112 244555677767777777755
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.02 E-value=20 Score=34.74 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=93.4
Q ss_pred CChhHHHHHHhcccHHHHHHhcCC----C-------CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC
Q 008827 237 KLECCRSRCLSLQVLKLVVDALAH----D-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 305 (552)
Q Consensus 237 ~~~~~~~~~~~~~~l~~lv~~L~~----~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 305 (552)
.+..+.+.+. .+|+..|+.+|.. + +......++.||+.+.......... +....++..+...|..++
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~v-l~~~~~i~~l~~sL~s~~ 113 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV 113 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHH-HHSSSHHHHHHHTCCTTS
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHH-HcCcHHHHHHHHHhCCCC
Confidence 4455666664 5777777777641 1 3466788889998886653222222 445678899999999899
Q ss_pred HHHHHHHHHHHHHhhcCCc-hh-HHHHH----------hhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCC-hHh--
Q 008827 306 TAVQVAALGAISNIVVDFT-TR-RSTFI----------RLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAE-DKC-- 369 (552)
Q Consensus 306 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~-~~~-- 369 (552)
+.++..++..|.-++.... .. -..++ +..-...+++.+. +.+.+.+..++..+..+....+ .+.
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~ 193 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV 193 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 9999999887777765432 12 22222 2234455666666 4556677666666655554322 122
Q ss_pred --HHHHHHhhcHHHHHhhhcCCChhHHHH
Q 008827 370 --KEEIFMELTASLLASLICDPEPSVQEQ 396 (552)
Q Consensus 370 --~~~i~~~~~~~~l~~ll~~~~~~v~~~ 396 (552)
|.++...|..+.+-.+=...++++..+
T Consensus 194 ~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 194 HIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 344444554444444433455555544
No 131
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.52 E-value=30 Score=33.37 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=103.3
Q ss_pred cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827 248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 327 (552)
Q Consensus 248 ~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 327 (552)
..+++.++++-.+.+.++|+..+..|...+..... + -..+++.|..+|.++++.+.+.+..+.+++- +..-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-----l-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f 132 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-----L-LLKLIANLNMLLRDENVNVVKKAILTMTQLY---KVAL 132 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-----G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHH
Confidence 36899999999999999999999999887654222 1 2466788888999999999988887776642 1111
Q ss_pred HHHHhh---------------CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc--c---CChH-------------------
Q 008827 328 STFIRL---------------GGVKLLVQLSKSMDSTIRLNALRALRNLIF--L---AEDK------------------- 368 (552)
Q Consensus 328 ~~~~~~---------------g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~---~~~~------------------- 368 (552)
+.+... ..-..++.+..+.+..+|..++..+..+.. . .+++
T Consensus 133 ~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp 212 (386)
T 3o2t_A 133 QWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHP 212 (386)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCS
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCC
Confidence 111111 222345566778899999999998887541 1 0100
Q ss_pred -h-HHHHH--HhhcHHHHHhhhcCC--ChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 008827 369 -C-KEEIF--MELTASLLASLICDP--EPSVQEQALALVRNLVDGRINSVEYIFA 417 (552)
Q Consensus 369 -~-~~~i~--~~~~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 417 (552)
. ...+. ..+.++.|+..+.++ ++-....++..|..++...|.....++.
T Consensus 213 ~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~ 267 (386)
T 3o2t_A 213 YIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQ 267 (386)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 0 11222 234677788877753 3434455777777777777765554443
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=82.54 E-value=4.6 Score=33.24 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=59.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC------CChhHHHHHHHHHHHhh
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD------PEPSVQEQALALVRNLV 405 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~------~~~~v~~~a~~~L~~l~ 405 (552)
.++..+.+-+++.++.++..|+..|-.+..+.++..+.++.....++.+++++.. .++.|+..++.++..-.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999998887777778888888888889988864 46789999888877665
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.58 E-value=3.2 Score=33.86 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=57.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~ 405 (552)
.++..+.+-+.+.++.++..|+..|-.+..+.++..+.++.....++.+..++...++.|+..++.++..-.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 456777778888999999999999988887777667767766667777888887778889998888876654
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=81.15 E-value=5.3 Score=32.85 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=59.2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC------CChhHHHHHHHHHHHhh
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD------PEPSVQEQALALVRNLV 405 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~------~~~~v~~~a~~~L~~l~ 405 (552)
.++..|.+-+.+.++.++..|+..|-.+..+.++..+.++.....++.|++++.. .++.|+..++.++..-.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4667788888899999999999999988887777777888777788889988863 56789999888887665
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.63 E-value=4.7 Score=33.77 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l 382 (552)
++|+..-...+..+.. ....- ..++..|.+-+++.++.++..|+..|-.+..+..+..+.++.....++.+
T Consensus 30 ~~Dw~~~leicD~I~~---~~~~~------keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el 100 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGS---TPNGA------KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV 100 (163)
T ss_dssp SCCHHHHHHHHHHHHH---SSSHH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 4566665555555532 11111 24567788888899999999999999988887777777777777778888
Q ss_pred HhhhcC-CChhHHHHHHHHHHHhh
Q 008827 383 ASLICD-PEPSVQEQALALVRNLV 405 (552)
Q Consensus 383 ~~ll~~-~~~~v~~~a~~~L~~l~ 405 (552)
++++.. .++.|+..++.++..-.
T Consensus 101 ~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 101 RAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHH
Confidence 888864 66789998888776654
No 136
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=77.66 E-value=1e+02 Score=34.99 Aligned_cols=327 Identities=14% Similarity=0.086 Sum_probs=157.5
Q ss_pred chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhc-
Q 008827 37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFV- 115 (552)
Q Consensus 37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~- 115 (552)
....++.+++-....+|......|..+.+..++.. ++..|..+|..++....+.+++|++|.-+ ++....+.
T Consensus 158 l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~H~~------v~~~L~~lL~~~~~L~~~iLdaLs~L~Ls-~~~l~~vr~ 230 (1323)
T 3s4w_B 158 LTAQMMQLISVAPVNLQHDFITSLPEILGDSQHAN------VGKELGELLVQNTSLTVPILDVFSSLRLD-PNFLSKIRQ 230 (1323)
T ss_dssp HHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGGHHH------HHHHHHHHHHHCSTTHHHHHHHHHHSCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHhHHHhcchhhHH------HHHHHHHHHhcCcchHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 44567777765556788888888888887766644 45678888887667788999999997543 33222221
Q ss_pred ------cccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHH
Q 008827 116 ------GPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188 (552)
Q Consensus 116 ------~~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~ 188 (552)
...+...+|.+++ ++++-++.--..+...|...-... .-..|..+..- ....+......-+
T Consensus 231 ~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~----------~~~~p~~~~~s--~~~~k~~~~~~~~ 298 (1323)
T 3s4w_B 231 LVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQ----------QFILPSRIQAS--QSKLKSKGLASSS 298 (1323)
T ss_dssp HHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC------------------------------------
T ss_pred HHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCcc----------ccccchhhhhh--hhhhhccccccCC
Confidence 1123456777777 333333221111222222111100 00111100000 0000000000000
Q ss_pred HhhcC-CHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc-CCCCHHHH
Q 008827 189 SLIAE-KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVR 266 (552)
Q Consensus 189 ~l~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L-~~~~~~v~ 266 (552)
.-..+ ...+... .+..|-..++.. ..+.++-++++.+.....+ ...+..++=++ .+.+...+
T Consensus 299 ~~~~~s~~~~~~l-----ild~lks~l~~~---k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~r 362 (1323)
T 3s4w_B 299 GNQENSDKDCIVL-----VFDVIKSAIRYE---KTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTK 362 (1323)
T ss_dssp ----CHHHHHHHH-----HHHHHHHHHHHC---HHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHH
T ss_pred ccccccccchHHH-----HHHHHHHHHhcC---hHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhH
Confidence 00000 0000000 111222222221 3445555555555543111 12333332222 23334455
Q ss_pred HHHHHHHHHhhcccccccchh---------hhccCcHHHHHHh----hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhh
Q 008827 267 SAACMCLRSVSRSIKNLSAGS---------FMNETIVIPLVRL----LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 333 (552)
Q Consensus 267 ~~a~~~L~~ls~~~~~~~~~~---------~~~~~~i~~Lv~l----L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~ 333 (552)
..+-..+.+..+. +.+.... .+-....+.++.+ +.+.++.++..+...-..+-..++. ..+.
T Consensus 363 k~aE~ilrkkI~~-G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~----~~qq 437 (1323)
T 3s4w_B 363 KGVEKLLRNKIQS-DCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT----YCQQ 437 (1323)
T ss_dssp HHHHHHHHHHHTT-TCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH----HHHH
T ss_pred HHHHHHHHHHHHc-CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc----hhHH
Confidence 5555555555443 1111110 1224555555544 4578999999988887776655543 3334
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH-hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM-ELTASLLASLICDPEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 407 (552)
.++..|+....+++..-...|+.+|..++... + ..+.. ...+..++..+.+-+..-..+...+|..++.+
T Consensus 438 eVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~-~---~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~ 508 (1323)
T 3s4w_B 438 EVVGALVTHVCSGTEAEVDTALDVLLELIVLN-A---SAMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFS 508 (1323)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-H---HHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC-H---HHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcC
Confidence 55667776665565554555888888887632 2 11111 12344555666677777777888999888754
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=75.69 E-value=6.9 Score=33.04 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l 382 (552)
++|+..-...|..+..= ...- ..++..|.+-+++.++.++..|+..|-.+..+.+...+.++.....++.|
T Consensus 28 ~~Dw~~ileicD~I~~~---~~~~------k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKE---LEGP------QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp SCCHHHHHHHHHHHHHS---TTHH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcC---CccH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 45666655555555321 1111 23567788888899999999999999988877666677777777788888
Q ss_pred HhhhcC------CChhHHHHHHHHHHHhh
Q 008827 383 ASLICD------PEPSVQEQALALVRNLV 405 (552)
Q Consensus 383 ~~ll~~------~~~~v~~~a~~~L~~l~ 405 (552)
++++.. .+..|+..++.++..-.
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 888852 45789999988887665
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=75.47 E-value=7.7 Score=31.89 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=51.9
Q ss_pred hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC------CChhHHHHHHHHH
Q 008827 422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS------NDSRLRTAAVWAV 495 (552)
Q Consensus 422 ~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~------~~~~~~~~a~~~l 495 (552)
++..+.+-|.+ +++.++..|+..|-.+...+-.....-+. ...++..|++++.. .+..|+......+
T Consensus 49 a~ral~krl~~-~n~~v~l~AL~LLe~cvkNCG~~fh~eia------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 49 ATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKRFHDEVG------KFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCCHHHHHHHT------SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 56677777776 99999999999998888744333322232 26788889998863 5778999988888
Q ss_pred Hhhc
Q 008827 496 LNLT 499 (552)
Q Consensus 496 ~~l~ 499 (552)
...+
T Consensus 122 ~~W~ 125 (149)
T 3g2s_A 122 YSWT 125 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 139
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=75.06 E-value=48 Score=29.95 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=74.3
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHh--------h
Q 008827 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI--------V 320 (552)
Q Consensus 249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl--------~ 320 (552)
.+++.++++..+.+.++|+..+..+...+.... .....+++.|..+++++++.+.+.+..+.+++ +
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~------~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV------ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457777787778889999999999988875422 23456788899999999999998888766653 3
Q ss_pred cCCch---hHHHHHh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827 321 VDFTT---RRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRALRNLI 362 (552)
Q Consensus 321 ~~~~~---~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 362 (552)
..... ..+.+-. ...=..++.+..+.+..+|..++..+..+.
T Consensus 127 ~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 22210 1111111 122344566778889999999999888754
No 140
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=73.59 E-value=47 Score=29.15 Aligned_cols=140 Identities=11% Similarity=-0.087 Sum_probs=89.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827 252 KLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTF 330 (552)
Q Consensus 252 ~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 330 (552)
..+..+..++..+.+..++..+....... ....++.+-.++. -++..+....+.+++.+....+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~---------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRF---------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGC---------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhC---------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 44566677788999999998887653220 1122333334444 46777777666666655433221
Q ss_pred HhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 331 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 331 ~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
...+.+.+...+++.-+|..|+-.+.......++ . ..++.+-.++.+++..|+....|+|+.+...+++
T Consensus 124 ---~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~---~-----~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 124 ---ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQ---D-----LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp ---GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCH---H-----HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCH---H-----HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 2446678899999999999887755333222221 1 1244555578899999999999999999998887
Q ss_pred hHHHHH
Q 008827 411 SVEYIF 416 (552)
Q Consensus 411 ~~~~i~ 416 (552)
.+...+
T Consensus 193 ~v~~fl 198 (220)
T 2b6c_A 193 WVEELM 198 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 141
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=69.66 E-value=54 Score=29.00 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=87.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHH-HHHHHhhcCCchhHHH
Q 008827 252 KLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAAL-GAISNIVVDFTTRRST 329 (552)
Q Consensus 252 ~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~-~aL~nl~~~~~~~~~~ 329 (552)
..+-.+..++..+.|..|+..+...... .....++.+-.++. .++..+....+ .+++.+....+
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~---------~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p----- 129 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKH---------INETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHP----- 129 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGG---------CCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCG-----
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCH-----
Confidence 4556677788888998888887543211 11223344444554 45677665442 34444333222
Q ss_pred HHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCc
Q 008827 330 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI 409 (552)
Q Consensus 330 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 409 (552)
....+.+...+.++++-+|..|+..+.......+++ .....+..++.+++..|+....|+|+.+...++
T Consensus 130 ---~~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 130 ---ELISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp ---GGGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred ---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH
Confidence 124467778999999999998876553322222221 233455667889999999999999999999887
Q ss_pred chHHHHHh
Q 008827 410 NSVEYIFA 417 (552)
Q Consensus 410 ~~~~~i~~ 417 (552)
+.+...++
T Consensus 199 ~~v~~fl~ 206 (232)
T 3jxy_A 199 DVVWEYVQ 206 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444433
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.16 E-value=9.5 Score=30.95 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=50.4
Q ss_pred hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 422 ~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
++..+.+-|.+ +++.++..|+..|-.+...+.......+. ...++.-+++++...++.|+......+...+
T Consensus 43 a~rai~Krl~~-~n~~~ql~AL~LLe~~vkNcG~~f~~eva------s~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNH-KDPHVAMQALTLLGACVSNCGKIFHLEVC------SRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHS------SHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CChHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45666667777 88999999999888887644322232222 2567777888887788999999888886554
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=68.90 E-value=16 Score=29.86 Aligned_cols=71 Identities=8% Similarity=0.085 Sum_probs=51.9
Q ss_pred hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC------CChhHHHHHHHHH
Q 008827 422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS------NDSRLRTAAVWAV 495 (552)
Q Consensus 422 ~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~------~~~~~~~~a~~~l 495 (552)
++..+.+-|.+ +++.++..|+..|-.+..++-.....-+. ..+++..|++++.. .+..|+..+...+
T Consensus 39 a~rai~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~eva------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 39 APWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEVA------KFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHh------hHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 56667777777 99999999999999888744333322332 26888889998874 4678999988888
Q ss_pred Hhhc
Q 008827 496 LNLT 499 (552)
Q Consensus 496 ~~l~ 499 (552)
...+
T Consensus 112 ~~W~ 115 (148)
T 1mhq_A 112 FSWT 115 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 144
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=68.80 E-value=17 Score=30.31 Aligned_cols=95 Identities=8% Similarity=0.059 Sum_probs=61.4
Q ss_pred cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhH
Q 008827 387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 466 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~ 466 (552)
.++|+......+..++.= +..... ++..+.+-|.+ +++.++..|+..|-.+...+.......+.
T Consensus 29 ~~~Dw~~~leicD~I~~~----~~~~ke-------A~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~Fh~eva---- 92 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGST----PNGAKD-------CLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIFHLEVC---- 92 (163)
T ss_dssp SSCCHHHHHHHHHHHHHS----SSHHHH-------HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHHHHHHT----
T ss_pred CCcCHHHHHHHHHHHhCC----CccHHH-------HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHHh----
Confidence 345666655555555542 111111 56667777777 89999999999998888744333332222
Q ss_pred hhhhhhHHHHHHhhcC-CChhHHHHHHHHHHhhc
Q 008827 467 RAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 467 ~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l~~l~ 499 (552)
..+++..|++++.. .++.|+..+...|...+
T Consensus 93 --s~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 93 --SRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp --SHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 26777788888865 67889999888776554
No 145
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=68.31 E-value=88 Score=30.14 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 008827 351 RLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 430 (552)
Q Consensus 351 ~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L 430 (552)
+...+.-+..+..+.+|. +=...++.++.+-.+++.+++...+.++...+..+.+.... +++.|..+|
T Consensus 42 Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~-------~l~~L~~LL 109 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK-------LIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 444444444544433332 11246777777777888888888888888777655443222 456666666
Q ss_pred cccCchhHHHHHHHHHHhhc--------CCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827 431 RIASKAEIEIQGMYVLGNVA--------TGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 431 ~~~~~~~v~~~a~~~L~~la--------~~~~--~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~ 499 (552)
++ .++.|...++.+.+++- .+.. +..+.. |. .-..+...++.+..+.+..+|..|...+..+.
T Consensus 110 ~d-~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~----W~-~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 110 RD-ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEAC----WD-MVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp TC-SSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH----HH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHH----HH-HHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 65 67777666555544432 1111 001111 10 11345566777888889999999998877654
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.89 E-value=22 Score=29.92 Aligned_cols=94 Identities=7% Similarity=0.061 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHh
Q 008827 388 DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLR 467 (552)
Q Consensus 388 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~ 467 (552)
++|+......+..++.=.. .... ++..+.+-|.+ +++.++..|+..|-.+..++-.....-+.
T Consensus 28 ~~Dw~~ileicD~I~~~~~----~~k~-------A~ral~krl~~-~n~~vql~AL~LLd~~vkNCG~~Fh~eva----- 90 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKELE----GPQI-------AVRLLAHKIQS-PQEWEALQALTVLEACMKNCGRRFHNEVG----- 90 (171)
T ss_dssp SCCHHHHHHHHHHHHHSTT----HHHH-------HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHHT-----
T ss_pred CcCHHHHHHHHHHHHcCCc----cHHH-------HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHh-----
Confidence 4566655555555544221 1111 56677777777 89999999999999888754333332232
Q ss_pred hhhhhHHHHHHhhcC------CChhHHHHHHHHHHhhc
Q 008827 468 AENKAQSCIIKFLQS------NDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 468 ~~~~~v~~Lv~lL~~------~~~~~~~~a~~~l~~l~ 499 (552)
..+++..|++++.. .+..||..+...|...+
T Consensus 91 -s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 91 -KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp -SHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 26788889998863 46789999888887665
No 147
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=65.95 E-value=1.8e+02 Score=32.97 Aligned_cols=231 Identities=14% Similarity=0.130 Sum_probs=122.9
Q ss_pred hHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHH---HHHHHH------hCcHHHHHHhhhcCCCChhhHHHHHHHHHHh
Q 008827 164 KLINNLLELLDDPGRVGDEASFAFSSLIAEKEDM---QKLAFE------VNGVDKLYNHLQKGSLHPRRFEGILLALADM 234 (552)
Q Consensus 164 g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~------~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l 234 (552)
.+...|.+++.+++........+|++|--+.+.. +..+.+ ...+|.++++|-......+. ..++..|..-
T Consensus 192 ~v~~~L~~lL~~~~~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~-~evI~~LR~~ 270 (1323)
T 3s4w_B 192 NVGKELGELLVQNTSLTVPILDVFSSLRLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTS-LEVIAELREN 270 (1323)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhH-HHHHHHHHHH
Confidence 4677888888877778888889999886444322 222222 24489999977544322222 2222333221
Q ss_pred hcC-----ChhHH---HHHH----------hcc----cHHHHHHhcCC---CCHHHHHHHHHHHHHhhcccccccchhhh
Q 008827 235 CSK-----LECCR---SRCL----------SLQ----VLKLVVDALAH---DSSDVRSAACMCLRSVSRSIKNLSAGSFM 289 (552)
Q Consensus 235 ~~~-----~~~~~---~~~~----------~~~----~l~~lv~~L~~---~~~~v~~~a~~~L~~ls~~~~~~~~~~~~ 289 (552)
-.. ++..+ ..+. +.+ ....+++.++. ....+..++.+.|.+.... .
T Consensus 271 L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~---------~ 341 (1323)
T 3s4w_B 271 LNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESA---------A 341 (1323)
T ss_dssp HHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGS---------T
T ss_pred cCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcc---------c
Confidence 100 00000 0000 001 11224444443 2667777787777776543 1
Q ss_pred ccCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHHH----------HhhCcHHHHH----HhhcCCCHHHHHHH
Q 008827 290 NETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTF----------IRLGGVKLLV----QLSKSMDSTIRLNA 354 (552)
Q Consensus 290 ~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~----------~~~g~i~~L~----~ll~~~~~~v~~~a 354 (552)
++.++..++-++ -+.+...+..|-..+.+.+.... ....+ +-....+.++ .++.+.++.++..+
T Consensus 342 ~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~-it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg 420 (1323)
T 3s4w_B 342 EHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDC-IQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFG 420 (1323)
T ss_dssp TCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTC-SCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred ccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCC-chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 234455544333 23345567777777777654321 11111 1123444444 45677889999988
Q ss_pred HHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827 355 LRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410 (552)
Q Consensus 355 ~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 410 (552)
......+....+.-++++++. .|+..+.+.+..-...|+.+|..++..++.
T Consensus 421 ~~lY~~lF~~fd~~~qqeVl~-----~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~ 471 (1323)
T 3s4w_B 421 SLLYKYAFKFFDTYCQQEVVG-----ALVTHVCSGTEAEVDTALDVLLELIVLNAS 471 (1323)
T ss_dssp HHHHHHHHHSSCHHHHHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhccchhHHHHHH-----HHHhhhcCCCcHHHHHHHHHHHHHHhcCHH
Confidence 877776655445456766654 344444444444445588888888876554
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.66 E-value=14 Score=32.80 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l 382 (552)
++|...-...+..+.. +.... ..++..|.+-+++.++.++..|+..|-.+..+.+...+.++.....++.|
T Consensus 23 ~~dw~~ileicD~I~~---~~~~~------k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l 93 (226)
T 3zyq_A 23 ETDWESILQICDLIRQ---GDTQA------KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL 93 (226)
T ss_dssp SCCHHHHHHHHHHHHT---TSSCH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH
Confidence 4566665555555531 11111 24567788888899999999999999888877666667777777777778
Q ss_pred Hhhhc-CCChhHHHHHHHHHHHhh
Q 008827 383 ASLIC-DPEPSVQEQALALVRNLV 405 (552)
Q Consensus 383 ~~ll~-~~~~~v~~~a~~~L~~l~ 405 (552)
.+++. ..++.|++.++.++....
T Consensus 94 ~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 94 KDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHH
Confidence 77775 466789999998887765
No 149
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=64.10 E-value=83 Score=28.35 Aligned_cols=133 Identities=16% Similarity=0.222 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH
Q 008827 349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428 (552)
Q Consensus 349 ~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~ 428 (552)
+.+...+.-...+..+.+|..-.+ .++.++.+..+++.+++.....++...+..+++.... +++.|..
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~-------~l~~L~~ 97 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEE-----FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH-------VINVVSM 97 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 456666666666555444432222 3455566666777888888888887777555443322 4556666
Q ss_pred HhcccCchhHHHHHHHHHHh--------hcCCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhh
Q 008827 429 QLRIASKAEIEIQGMYVLGN--------VATGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL 498 (552)
Q Consensus 429 ~L~~~~~~~v~~~a~~~L~~--------la~~~~--~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l 498 (552)
++++ .++.|...++.+..+ ++..+. +..+..-+ .-..+...++....+.+..+|..|...+..+
T Consensus 98 Ll~d-~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~-----~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 98 LLRD-NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWN-----ILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp HTTC-SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHH-----HHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH-----HHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 6665 667776665554443 232211 01111111 1134556778888889999999999888775
Q ss_pred c
Q 008827 499 T 499 (552)
Q Consensus 499 ~ 499 (552)
.
T Consensus 172 I 172 (257)
T 3gs3_A 172 V 172 (257)
T ss_dssp H
T ss_pred H
Confidence 4
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=62.86 E-value=23 Score=29.34 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 381 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~ 381 (552)
++|+..-...+..+.. +.... ..++..|.+-++ +.++.++..|+..|-.+..+.++..+.++.....++.
T Consensus 31 ~~Dw~~~leicD~I~~---~~~~~------k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e 101 (157)
T 1elk_A 31 SEDWALNMEICDIINE---TEEGP------KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVES 101 (157)
T ss_dssp SCCHHHHHHHHHHHHH---SSSHH------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred CcCHHHHHHHHHHHhC---CCccH------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHH
Confidence 4566665555555532 11111 245667777786 5889999999999998888777777777777777777
Q ss_pred -HHhhhc---CCChhHHHHHHHHHHHhh
Q 008827 382 -LASLIC---DPEPSVQEQALALVRNLV 405 (552)
Q Consensus 382 -l~~ll~---~~~~~v~~~a~~~L~~l~ 405 (552)
+++++. +++..|++.++.++..-.
T Consensus 102 ~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 102 VLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 778774 234578888887776554
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.48 E-value=21 Score=31.50 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=54.9
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc-CCChhHHHHHHHHHHHhh
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLV 405 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~ 405 (552)
.++..|.+-+++.++.++..|+..|..+..+.++..+.++.....++.+..++. ..+..|++.++.++..-.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 356677778888999999999999998887665556666666667777777775 456788888887776554
No 152
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=52.07 E-value=1.8e+02 Score=28.54 Aligned_cols=233 Identities=14% Similarity=0.070 Sum_probs=123.4
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCC
Q 008827 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE 366 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~ 366 (552)
..+...+..|+.+++++|++-|......|..+=..+...|..+. ...-..+.++.... ...--...+..++.+..+-.
T Consensus 158 ~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa 236 (449)
T 2npp_B 158 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 236 (449)
T ss_dssp TSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHH-HHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCC
T ss_pred hCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccC
Confidence 57788999999999999999999999999887665555553333 23334455555432 22223345566666654422
Q ss_pred hHhHHHHHHhhcHHHHHhhhcCCChh-HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHH
Q 008827 367 DKCKEEIFMELTASLLASLICDPEPS-VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 445 (552)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~ 445 (552)
...+++ ........|+.|.+..... ...+-..++..+...++.....++ ..+.+..-. .++.-..--+.-
T Consensus 237 ~PLKee-hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-------~~LLk~WP~-tns~KevlFL~e 307 (449)
T 2npp_B 237 LPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-------MALLKYWPK-THSPKEVMFLNE 307 (449)
T ss_dssp SSCCHH-HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-------HHHHHTCCS-SCHHHHHHHHHH
T ss_pred CCCcHH-HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-------HHHHHhCCC-CCchHHHHHHHH
Confidence 112211 1112234455555544432 223444555555555554333322 222222211 222223333444
Q ss_pred HHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC---cHHH
Q 008827 446 LGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG---IVSH 521 (552)
Q Consensus 446 L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g---~~~~ 521 (552)
|..+.. -.+.....++ ..+...+.+.+.|.+..|-+.|.....| ++...+.... ++|.
T Consensus 308 leeile~~~~~ef~~i~--------~~lF~~la~ci~S~hfqVAErAL~~w~N----------~~i~~li~~n~~~IlPi 369 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIM--------EPLFRQLAKCVSSPHFQVAERALYYWNN----------EYIMSLISDNAAKILPI 369 (449)
T ss_dssp HHHHHTTCCHHHHHHHH--------HHHHHHHHHHHTCSCHHHHHHHHGGGGC----------HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH--------HHHHHHHHHHHcCCCHHHHHHHHHHHCC----------HHHHHHHHhchhhhHHh
Confidence 444443 2233344444 3566788899999999988887643321 1222232222 2344
Q ss_pred HHhhh-c----CCCccHHHHHHHHHHHHhhhc
Q 008827 522 VKNMV-N----DPCLDVKLRVKTALEQFNSFD 548 (552)
Q Consensus 522 L~~ll-~----~~~~~v~~~a~~al~~~~~~~ 548 (552)
+..-+ + .=+..++..+..++..+.+.+
T Consensus 370 i~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 370 MFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 44433 2 225779999999988777654
No 153
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=51.80 E-value=59 Score=26.16 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=51.4
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc-----CC------CccHHHHHHH
Q 008827 471 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-----DP------CLDVKLRVKT 539 (552)
Q Consensus 471 ~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-----~~------~~~v~~~a~~ 539 (552)
.+...|.+-|.+.++.++..|..+|-.|+. .|+...+..+.+.- ..+..+.+ |+ ...||++|..
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~---~Gs~~f~~~~r~~~--~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVG---KSGSEFRREMQRNS--VAVRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHTT--HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHH---hCCHHHHHHHHHhH--HHHHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 344678888899999999999999999995 47777777776553 23444432 21 1358999999
Q ss_pred HHHHHhhh
Q 008827 540 ALEQFNSF 547 (552)
Q Consensus 540 al~~~~~~ 547 (552)
.+.-+.+.
T Consensus 124 l~~ll~d~ 131 (140)
T 1vdy_A 124 TISAIFSE 131 (140)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhCc
Confidence 88877654
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.17 E-value=15 Score=32.55 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=52.0
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhh
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLI 191 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~ 191 (552)
.++..|.+-+++.++.++..|+..|-.+.++........+.....+..|+++++. +..|+..+...+...+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3566677788899999999999999988887655455556667788888888862 3457777766655443
No 155
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=50.73 E-value=1.8e+02 Score=28.02 Aligned_cols=187 Identities=15% Similarity=0.079 Sum_probs=95.6
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCC
Q 008827 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE 366 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~ 366 (552)
..+...+..|+.+++++|++-|......|..+-..+...|..+ ....-..+.++.... ...--...+..++.+..+-.
T Consensus 170 ~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~I-rk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa 248 (392)
T 2jak_A 170 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYI-RKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 248 (392)
T ss_dssp TSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred hCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccC
Confidence 5677889999999999999999999999987765555555333 333445556665442 22222345556666544332
Q ss_pred hHhHHHHHHhhcHHHHHhhhcCCChh-HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHH
Q 008827 367 DKCKEEIFMELTASLLASLICDPEPS-VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 445 (552)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~ 445 (552)
...+++ ........++.|.+..... ...+-..++..+...++.....++ ..+.+..-. .+..-+.--+.-
T Consensus 249 ~PLKee-hk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-------~~LLk~WP~-tns~KevlFL~e 319 (392)
T 2jak_A 249 LPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-------MALLKYWPK-THSPKEVMFLNE 319 (392)
T ss_dssp SSCCHH-HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHH-------HHHHHSSCS-SCCTTHHHHHHH
T ss_pred CCCcHH-HHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHH-------HHHHHhCCC-CCchHHHHHHHH
Confidence 111221 1111234445555443322 222333444444444544333322 222222211 122222222222
Q ss_pred HHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHH
Q 008827 446 LGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV 492 (552)
Q Consensus 446 L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~ 492 (552)
|..+.. -.+.....++ ..+...+.+.+.|.+..|-+.|.
T Consensus 320 leeiLe~~~~~~f~~i~--------~~lF~~la~ci~S~hfqVAErAL 359 (392)
T 2jak_A 320 LEEILDVIEPSEFVKIM--------EPLFRQLAKCVSSPHFQVAERAL 359 (392)
T ss_dssp HHHHHHTCCHHHHHHHH--------HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH--------HHHHHHHHHHHcCCcHHHHHHHH
Confidence 333322 1222334444 35567888999999998888875
No 156
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=50.01 E-value=1.9e+02 Score=28.01 Aligned_cols=236 Identities=15% Similarity=0.100 Sum_probs=125.0
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhcccCC
Q 008827 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAE 366 (552)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~ 366 (552)
..+...+..|+.+++++|++-|...-..|..+-..+...|. ++....-..+.++..... ..-....+..++.+..+-.
T Consensus 125 ~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~-~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa 203 (403)
T 3fga_B 125 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 203 (403)
T ss_dssp TSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCC
T ss_pred hcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccC
Confidence 56777889999999999999999999999887765555443 333333345555544321 1222234555555544321
Q ss_pred hHhHHHHHHhhcHHHHHhhhcCCChh-HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHH
Q 008827 367 DKCKEEIFMELTASLLASLICDPEPS-VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 445 (552)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~ 445 (552)
...+++ ........|+.|.+..... ...+-..++..+...++.....++ ..+.+..-. .++.-..--+.-
T Consensus 204 ~PLkee-hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-------~~LLk~WP~-tns~KevlFL~E 274 (403)
T 3fga_B 204 LPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-------MALLKYWPK-THSPKEVMFLNE 274 (403)
T ss_dssp SSCCHH-HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-------HHHHHTCCS-SCHHHHHHHHHH
T ss_pred CCchHH-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-------HHHHHhCCC-CCcHHHHHHHHH
Confidence 112211 1111234445555544432 224444555555555554433322 222222211 233333334444
Q ss_pred HHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC---cHHH
Q 008827 446 LGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG---IVSH 521 (552)
Q Consensus 446 L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g---~~~~ 521 (552)
+..+... ++.....+. ..+...+...+.|++..|-+.|..... .++...+.... ++|.
T Consensus 275 le~iLe~~~~~~f~~i~--------~~lf~~la~ci~S~hfqVAErAL~~wn----------Ne~i~~li~~n~~~IlPi 336 (403)
T 3fga_B 275 LEEILDVIEPSEFVKIM--------EPLFRQLAKCVSSPHFQVAERALYYWN----------NEYIMSLISDNAAKILPI 336 (403)
T ss_dssp HHHHHTTCCHHHHHHHH--------HHHHHHHHHHHTCSCHHHHHHHHGGGG----------CHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH--------HHHHHHHHHHHCCCCHHHHHHHHHHhc----------cHHHHHHHHHhHHHHHHH
Confidence 4444432 233344444 356678889999999988888764331 12233333222 2333
Q ss_pred ----HHhhhc-CCCccHHHHHHHHHHHHhhhcCCC
Q 008827 522 ----VKNMVN-DPCLDVKLRVKTALEQFNSFDDSL 551 (552)
Q Consensus 522 ----L~~ll~-~~~~~v~~~a~~al~~~~~~~~~~ 551 (552)
|.+..+ .=+..++..+..++..+.+.+..|
T Consensus 337 i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~l 371 (403)
T 3fga_B 337 MFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKL 371 (403)
T ss_dssp HHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHH
Confidence 333322 236779999999999988877665
No 157
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=49.88 E-value=56 Score=26.91 Aligned_cols=96 Identities=5% Similarity=0.041 Sum_probs=59.4
Q ss_pred cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhH
Q 008827 387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 466 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~ 466 (552)
.++|+..-...+..++.= +..... ++..+.+-|++++++.++..|+..|-.+..++-......+.
T Consensus 30 ~~~Dw~~~leicD~I~~~----~~~~k~-------a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva---- 94 (157)
T 1elk_A 30 QSEDWALNMEICDIINET----EEGPKD-------ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVA---- 94 (157)
T ss_dssp SSCCHHHHHHHHHHHHHS----SSHHHH-------HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHT----
T ss_pred CCcCHHHHHHHHHHHhCC----CccHHH-------HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHh----
Confidence 356666666666655442 111111 56677777775478999999999998888744222332222
Q ss_pred hhhhhhHHH-HHHhhcC---CChhHHHHHHHHHHhhc
Q 008827 467 RAENKAQSC-IIKFLQS---NDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 467 ~~~~~~v~~-Lv~lL~~---~~~~~~~~a~~~l~~l~ 499 (552)
+.+++.. |++++.. ++..|+..+...+...+
T Consensus 95 --~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 95 --SQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp --SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 2677776 7887742 34578888877776554
No 158
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=49.37 E-value=60 Score=27.87 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=71.2
Q ss_pred ccHHHHHHhcCC------CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc--C-CCHHHHHHHHHHHHHh
Q 008827 249 QVLKLVVDALAH------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--D-TSTAVQVAALGAISNI 319 (552)
Q Consensus 249 ~~l~~lv~~L~~------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~-~~~~v~~~a~~aL~nl 319 (552)
..+|.++.++.+ .+.............|..+ +.+.-. ..-+..+|+++..+= + ....+|+.|+..++.+
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N-~~l~le-pYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKN-KHVFID-PYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHC-TTCCCG-GGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcC-CCCChH-HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 367888777653 3666666677777777776 444444 456678888888762 1 2238999999999999
Q ss_pred hcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 008827 320 VVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNL 361 (552)
Q Consensus 320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l 361 (552)
+..++..- .-+...+...+.+.+.++ +.....-|+..|..+
T Consensus 118 ~~~~~~~y-~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 118 YDTYSRSY-KTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHTTTS-TTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCccC-chHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 87543311 111233455566655543 566777788888877
No 159
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=45.38 E-value=1.9e+02 Score=26.75 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=62.6
Q ss_pred CChhhHHHHHHHHHHhhcCChhHHHHHHhc--ccHHH----HHHhcCC---CCHHHHHHHHHHHHHhhcccccccchhhh
Q 008827 219 LHPRRFEGILLALADMCSKLECCRSRCLSL--QVLKL----VVDALAH---DSSDVRSAACMCLRSVSRSIKNLSAGSFM 289 (552)
Q Consensus 219 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~--~~l~~----lv~~L~~---~~~~v~~~a~~~L~~ls~~~~~~~~~~~~ 289 (552)
.++.+++.+.++|++-.+++|.....+.+. .++.. +..++.. ....+++.-+.+|..|..+... |
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~-----F- 155 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED-----L- 155 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT-----C-
T ss_pred CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh-----h-
Confidence 457789999999999888998887766653 23333 3333322 3446677777888888776322 3
Q ss_pred ccCcHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 008827 290 NETIVIPLVRLLDDT--STAVQVAALGAISNIV 320 (552)
Q Consensus 290 ~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~ 320 (552)
....+..|.+++.-. ++.++..+...+..+-
T Consensus 156 ~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 156 PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp --CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 234556777776544 8888888877776543
No 160
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=44.85 E-value=1.9e+02 Score=26.69 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh--cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH
Q 008827 351 RLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428 (552)
Q Consensus 351 ~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~ 428 (552)
-..|+..|..++. +-+...++.+.. .+.|..++ ...++.+++.+.++++....++|+.++.|.+.-...+..+..
T Consensus 45 le~aLD~L~ElSH--Di~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 45 LEDSFDRIMEFAH--DYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHGGGTT--SHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHhhh--hHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 4445555555543 334445555421 23333333 446678999999999999999999998887753323333322
Q ss_pred Hhcc---c---CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHHhhc
Q 008827 429 QLRI---A---SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLT 499 (552)
Q Consensus 429 ~L~~---~---~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~~l~ 499 (552)
-|.. . ....+...-+++|.-+...+.... . .| +..|.+++... +..+|..++..+..+-
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~----~-------~~-m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP----I-------YS-TVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------------CC-HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh----h-------cc-HHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 2221 0 123456667777777776543211 1 12 24455555544 8888888888887765
No 161
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=41.10 E-value=80 Score=28.37 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhH
Q 008827 394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473 (552)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v 473 (552)
+-.++.++|-+..+.+.. +.+...+...+.+ .++..+.-++.+++|+..+....++.+.. +...
T Consensus 71 ~fP~lDllRl~~~~~~~~--------~~l~~~l~~~~~~-~~~~~~ml~lR~l~NlF~~~~~g~~l~~~-------~~~~ 134 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS--------SDIKDYIEEGLGN-KNITLTMLTVRILVNCFNNENWGVKLLES-------NQVY 134 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG--------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTTCTTTHHHHHTS-------HHHH
T ss_pred cchHHHHHHHHHcCCchH--------HHHHHHHHHhcCC-CchhHHHHHHHHHHHcccCCchHHHHHhc-------chhH
Confidence 445677777666543321 1123333333443 56778889999999999765534554432 2233
Q ss_pred HHHHHhhc----C----CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc---------CCCccHHHH
Q 008827 474 SCIIKFLQ----S----NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN---------DPCLDVKLR 536 (552)
Q Consensus 474 ~~Lv~lL~----~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~---------~~~~~v~~~ 536 (552)
..+...+. + .+..+|.+++..+.|++.-...... +......+.+.+. ..+.|...|
T Consensus 135 ~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR 207 (253)
T 3gae_A 135 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-------DLELLPIVADAINTKYGPLEEYQECEEAAYR 207 (253)
T ss_dssp TTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-------CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHhcccccccCCHHHHHH
Confidence 34444332 1 3667999999999999841000000 0122233444332 126678889
Q ss_pred HHHHHHHHhhhc
Q 008827 537 VKTALEQFNSFD 548 (552)
Q Consensus 537 a~~al~~~~~~~ 548 (552)
+..||+++.-.+
T Consensus 208 ~LvAlGtL~~~~ 219 (253)
T 3gae_A 208 LTVAYGNLATVE 219 (253)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhCc
Confidence 999999887543
No 162
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=39.82 E-value=1.9e+02 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=12.0
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHh
Q 008827 381 LLASLICDPEPSVQEQALALVRNL 404 (552)
Q Consensus 381 ~l~~ll~~~~~~v~~~a~~~L~~l 404 (552)
.+..+..++..+.+.-++.++...
T Consensus 59 ~~~~L~~s~~~E~r~la~~~l~~~ 82 (220)
T 2b6c_A 59 EIEAYYQKTEREYQYVAIDLALQN 82 (220)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCchhHHHHHHHHHHHHH
Confidence 334444455555555555555544
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.76 E-value=27 Score=30.69 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=48.0
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHH
Q 008827 121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFS 188 (552)
Q Consensus 121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~ 188 (552)
.++..|.+-+++.++.++..|+..|-.+..+........+.....+..|++++++ +..|+..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~ 111 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3556677788899999999999999988887544444556666788888888763 2356655554443
No 164
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=37.98 E-value=2.3e+02 Score=31.22 Aligned_cols=181 Identities=15% Similarity=0.091 Sum_probs=90.7
Q ss_pred HHHHHhhcCC-HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc----CChhhHHHHHHHHHH--HhhhC
Q 008827 80 KRLTSLLGGS-LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD----RFARTRLLASLCLIV--IRNAS 152 (552)
Q Consensus 80 ~~L~~lL~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~----~~~~vr~~A~~~L~~--l~~~~ 152 (552)
.-|+.+-.+. .+||..|-.+|.......+... .-.++.+++.++. .+.+.-.-|..+|.. +...
T Consensus 136 ~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~--------~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~- 206 (997)
T 1vsy_5 136 VDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSY--------GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK- 206 (997)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHH--------HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-
Confidence 3444444453 4899999888888665443332 2346677775543 333333334444431 1111
Q ss_pred CCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCC---------------------HH----H--HH-----
Q 008827 153 PCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEK---------------------ED----M--QK----- 199 (552)
Q Consensus 153 ~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~---------------------~~----~--~~----- 199 (552)
...+.......++.|++... +.+.++.-+..+...+...- +. . .+
T Consensus 207 --~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~ 284 (997)
T 1vsy_5 207 --LMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKK 284 (997)
T ss_dssp --GGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTH
T ss_pred --HhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 11223334567777777766 55666655544433332100 00 0 00
Q ss_pred --HHHH---hCcHHHHHHhhhcCCCC--hhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827 200 --LAFE---VNGVDKLYNHLQKGSLH--PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC 272 (552)
Q Consensus 200 --~~~~---~~~i~~L~~~L~~~~~~--~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~ 272 (552)
..+. .+....+++.++ .+.+ .+....++..+.++....+. .....++..+++.+.++.+.+|..+..+
T Consensus 285 ~r~~~~~~~~~L~~~l~~~~~-~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~dhp~~R~~a~~~ 359 (997)
T 1vsy_5 285 KREYYLSLLVDLQDKLLDKLD-NEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTKHPEIIHLVVKS 359 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 0000 122233344442 2245 55556656654444421110 1122367788899999999999999877
Q ss_pred HHHh
Q 008827 273 LRSV 276 (552)
Q Consensus 273 L~~l 276 (552)
+..+
T Consensus 360 l~~i 363 (997)
T 1vsy_5 360 LLST 363 (997)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 7444
No 165
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=36.93 E-value=74 Score=28.62 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=63.0
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc----CC----CCHHHHHHHHHHHHHhhcccccccchhhhcc
Q 008827 220 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL----AH----DSSDVRSAACMCLRSVSRSIKNLSAGSFMNE 291 (552)
Q Consensus 220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L----~~----~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~ 291 (552)
.+..+.-++++++|+-.+..-.+..+........+++.+ .+ .+..+|.+++.++.|++-...+.+. +.
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DL 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CT
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hH
Confidence 467888999999998754332455454433344444443 22 3567899999999999764221111 12
Q ss_pred CcHHHHHHhhcC---------CCHHHHHHHHHHHHHhhcCC
Q 008827 292 TIVIPLVRLLDD---------TSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 292 ~~i~~Lv~lL~~---------~~~~v~~~a~~aL~nl~~~~ 323 (552)
.....++..+.. .++|....++.|+++++...
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 334455555542 37899999999999998643
No 166
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=35.02 E-value=3e+02 Score=26.78 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhH
Q 008827 394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473 (552)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v 473 (552)
+-.++.++|-+....+.. +.+...+...+.+ ..+..+.-++.+++|+.......+. ++. .....
T Consensus 243 ~FPaLDLLRl~v~~p~~~--------~~l~~li~~~l~~-~~~an~MltlR~laNlF~~~~~g~~-ll~------~~~~~ 306 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS--------SDIKDYIEEGLGN-KNITLTMLTVRILVNCFNNENWGVK-LLE------SNQVY 306 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG--------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTTCTTTHHH-HHT------SHHHH
T ss_pred ccHHHHHHHHHHcCCchH--------HHHHHHHHHhcCC-CChhHHHHHHHHHHHhcCCcchHHH-Hhh------CchhH
Confidence 444667777666543311 1133344344443 5677888899999999875542333 332 12233
Q ss_pred HHHHHhhc--------CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc---------CCCccHHHH
Q 008827 474 SCIIKFLQ--------SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN---------DPCLDVKLR 536 (552)
Q Consensus 474 ~~Lv~lL~--------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~---------~~~~~v~~~ 536 (552)
..+...+. +.+..++.+++..+.|++.- ..... .+......+.+.+. ..+.|...|
T Consensus 307 ~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~------~~~~~-~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yR 379 (425)
T 3pst_A 307 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL------VTKGN-SDLELLPIVADAINTKYGPLEEYQECEEAAYR 379 (425)
T ss_dssp HHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHH------HHHSC-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHH------Hhccc-chHHHHHHHHHHHHhhccccccccCCHHHHHH
Confidence 44554442 23567999999999999841 00000 01122334444333 236788899
Q ss_pred HHHHHHHHhhh
Q 008827 537 VKTALEQFNSF 547 (552)
Q Consensus 537 a~~al~~~~~~ 547 (552)
+..||+++.-.
T Consensus 380 lLVALGtLv~~ 390 (425)
T 3pst_A 380 LTVAYGNLATV 390 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988743
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=34.69 E-value=2e+02 Score=27.97 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred CChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCC--------CCHHHHHHHHHHHHHhhcccccccchhhh
Q 008827 219 LHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAH--------DSSDVRSAACMCLRSVSRSIKNLSAGSFM 289 (552)
Q Consensus 219 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~--------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~ 289 (552)
..+..+.-++++++|+-.+ +.....+. .......+++.+.. .+..++.+++.++.|++-.....+.
T Consensus 274 ~~~an~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---- 348 (425)
T 3pst_A 274 KNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---- 348 (425)
T ss_dssp SSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS----
T ss_pred CChhHHHHHHHHHHHhcCC-cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----
Confidence 3577888999999998654 44333333 33345556665531 2457899999999999764221111
Q ss_pred ccCcHHHHHHhhc---------CCCHHHHHHHHHHHHHhhcCCc
Q 008827 290 NETIVIPLVRLLD---------DTSTAVQVAALGAISNIVVDFT 324 (552)
Q Consensus 290 ~~~~i~~Lv~lL~---------~~~~~v~~~a~~aL~nl~~~~~ 324 (552)
+......++..+. ..++|....++-||++|+...+
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 1233455666554 2588999999999999986433
No 168
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=28.46 E-value=1.3e+02 Score=24.60 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHH
Q 008827 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 381 (552)
Q Consensus 303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~ 381 (552)
.+|+..-...|..+.. ....- ..++..|.+-+.+ .++.++..|+..|-.+..+.+.....++.....++-
T Consensus 31 ~~Dw~~ileicD~In~---~~~~p------keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e 101 (152)
T 3rru_A 31 TEDWGQFMHICDIINT---TQDGP------KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKE 101 (152)
T ss_dssp SCCHHHHHHHHHHHHH---STTHH------HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTT
T ss_pred CccHHHHHHHHHHHhC---CCccH------HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHH
Confidence 4566665555555532 11111 2456677777764 688888889988888877777666666665556653
Q ss_pred -HHhhhcC---CChhHHHHHHHHHHHhhcC
Q 008827 382 -LASLICD---PEPSVQEQALALVRNLVDG 407 (552)
Q Consensus 382 -l~~ll~~---~~~~v~~~a~~~L~~l~~~ 407 (552)
+++++.. ....|+..++.++..-...
T Consensus 102 ~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 102 NLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp TTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 6677653 3457999999988887643
No 169
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=28.44 E-value=3.9e+02 Score=25.35 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhH
Q 008827 394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473 (552)
Q Consensus 394 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v 473 (552)
+-.++.++|-+....+.. +.+...+...+.+ ..+..+.-++.+++|+-.+....++ ++.. ....
T Consensus 180 ~FP~LDLLRl~v~~~~~~--------~~l~~li~~~~~~-~~~~n~MltlR~laNlF~~~~~g~~-ll~~------~~~~ 243 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS--------SDIKDYIEEGLGN-KNITLTMLTVRILVNCFNNENWGVK-LLES------NQVY 243 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG--------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTTCTTTHHH-HHTS------HHHH
T ss_pred cchHHHHHHHHhcCCChH--------HHHHHHHHHhcCC-CChhHHHHHHHHHHHhccCcchHHH-HHhc------chhH
Confidence 444667777666543311 1123333333443 5677888899999999875542333 3321 1122
Q ss_pred HHHHHhhc--------CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc---------CCCccHHHH
Q 008827 474 SCIIKFLQ--------SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN---------DPCLDVKLR 536 (552)
Q Consensus 474 ~~Lv~lL~--------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~---------~~~~~v~~~ 536 (552)
..+.+.+. +.+..++.+++..+.|++.- ..... .+......+.+.+. ..+.|...|
T Consensus 244 ~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~------~~~~~-~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yR 316 (362)
T 3l3f_X 244 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL------VTKGN-SDLELLPIVADAINTKYGPLEEYQECEEAAYR 316 (362)
T ss_dssp TTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHH------HHHTC-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHH------Hhccc-chHHHHHHHHHHHHhhccccccccCCHHHHHH
Confidence 33344331 23567999999999999841 00000 01122334444433 247788899
Q ss_pred HHHHHHHHhhh
Q 008827 537 VKTALEQFNSF 547 (552)
Q Consensus 537 a~~al~~~~~~ 547 (552)
+..||+++.-.
T Consensus 317 lLVALGtL~~~ 327 (362)
T 3l3f_X 317 LTVAYGNLATV 327 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998743
No 170
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=28.36 E-value=2e+02 Score=27.30 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=62.5
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHhc-ccHHHHHHhcC--------CCCHHHHHHHHHHHHHhhcccccccchhhhc
Q 008827 220 HPRRFEGILLALADMCSKLECCRSRCLSL-QVLKLVVDALA--------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMN 290 (552)
Q Consensus 220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~-~~l~~lv~~L~--------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~ 290 (552)
.+..+.-++++++|+-.+ +.....+... .....+++.+. ..+..++.+++.++.|++-.....+. +
T Consensus 212 ~~~n~MltlR~laNlF~~-~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~----~ 286 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----D 286 (362)
T ss_dssp SHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS----C
T ss_pred ChhHHHHHHHHHHHhccC-cchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----h
Confidence 477888999999998654 4433333332 22344444442 12467899999999999764221111 1
Q ss_pred cCcHHHHHHhhc---------CCCHHHHHHHHHHHHHhhcCC
Q 008827 291 ETIVIPLVRLLD---------DTSTAVQVAALGAISNIVVDF 323 (552)
Q Consensus 291 ~~~i~~Lv~lL~---------~~~~~v~~~a~~aL~nl~~~~ 323 (552)
......++..+. ..++|....++-||++|+...
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 234455666655 358899999999999998643
No 171
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.99 E-value=1.7e+02 Score=25.09 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCC--C-cchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827 7 YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNES--E-NVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT 83 (552)
Q Consensus 7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~--~-~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~ 83 (552)
+......-++..+++..-|... -+.+=...+|.++..+-+.. + .+|+.|+.++..+|+...+...-.+.-+...+.
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~-lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVF-IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCC-CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 5667778888999998777665 45555567787777764221 2 599999999999986533211111112233444
Q ss_pred HhhcC---CHHHHHHHHHHHHHHh
Q 008827 84 SLLGG---SLIQRDASLESIATIF 104 (552)
Q Consensus 84 ~lL~~---~~~v~~~al~~L~~l~ 104 (552)
+.+.+ +...+.-|+..|..+.
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCChHHHHHHHHHHHHhH
Confidence 44432 3456666776666654
No 172
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=23.15 E-value=7.8e+02 Score=27.07 Aligned_cols=189 Identities=13% Similarity=0.107 Sum_probs=104.1
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc----CCCHHHHHHHHHHHH-----
Q 008827 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK----SMDSTIRLNALRALR----- 359 (552)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~aL~----- 359 (552)
.+..++..|+++--+.-++||..|-.+|......+...+.. ++|.+++.|+ +.+.+--..|+..|.
T Consensus 130 l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~ 204 (997)
T 1vsy_5 130 LENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIH 204 (997)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhh
Confidence 44566778888878889999999999999988766544432 3455555543 344444455555443
Q ss_pred HhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCc--c----------------------hHHHH
Q 008827 360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI--N----------------------SVEYI 415 (552)
Q Consensus 360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~----------------------~~~~i 415 (552)
..+. .+.... ...++.+++....+.++++.-+-.+...+...-. . .++..
T Consensus 205 ~~~~-~d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 205 RKLM-TDYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHGG-GCHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHH
T ss_pred hHHh-cChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 1111 111111 1245556666666667776665555444433200 0 01100
Q ss_pred HhhcC-----------chHHHHHHHhcccCc--hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC
Q 008827 416 FAEDG-----------IILDAVGRQLRIASK--AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 482 (552)
Q Consensus 416 ~~~~~-----------~~~~~l~~~L~~~~~--~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~ 482 (552)
-.... .+.+.++...++... +.....++..+.++...... .. ...++..+++.+.+
T Consensus 279 ~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~-------~~~~v~~~~~~l~~ 347 (997)
T 1vsy_5 279 KLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KP-------DKRAVFSIISQIST 347 (997)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CC-------CHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CC-------CHHHHHHHHHhhcC
Confidence 00000 022222333333345 66666666665555532210 01 13455678888999
Q ss_pred CChhHHHHHHHHHHhhc
Q 008827 483 NDSRLRTAAVWAVLNLT 499 (552)
Q Consensus 483 ~~~~~~~~a~~~l~~l~ 499 (552)
+++.+|..|..++..+.
T Consensus 348 dhp~~R~~a~~~l~~il 364 (997)
T 1vsy_5 348 KHPEIIHLVVKSLLSTC 364 (997)
T ss_dssp CCHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887766
No 173
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=21.07 E-value=3.2e+02 Score=21.82 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=34.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh
Q 008827 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME 376 (552)
Q Consensus 334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~ 376 (552)
.+++.|.+-+.+.++.++..|+..|..++...++.....+...
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~ 91 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN 91 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh
Confidence 4567888888888899999999999999987777666666554
No 174
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.96 E-value=1.7e+02 Score=23.85 Aligned_cols=97 Identities=3% Similarity=0.001 Sum_probs=57.2
Q ss_pred cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhH
Q 008827 387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 466 (552)
Q Consensus 387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~ 466 (552)
.++|+......+..++.=. ..... ++..+.+-|.+.+++.++..|+..|-.+..++-......+.
T Consensus 30 ~~~Dw~~ileicD~In~~~----~~pke-------A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eia---- 94 (152)
T 3rru_A 30 QTEDWGQFMHICDIINTTQ----DGPKD-------AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIV---- 94 (152)
T ss_dssp CSCCHHHHHHHHHHHHHST----THHHH-------HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHS----
T ss_pred CCccHHHHHHHHHHHhCCC----ccHHH-------HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHH----
Confidence 3456666555665554421 11111 56666666765368888888888888877643322332332
Q ss_pred hhhhhhHHH-HHHhhcCC---ChhHHHHHHHHHHhhcC
Q 008827 467 RAENKAQSC-IIKFLQSN---DSRLRTAAVWAVLNLTC 500 (552)
Q Consensus 467 ~~~~~~v~~-Lv~lL~~~---~~~~~~~a~~~l~~l~~ 500 (552)
...++.- |++++... ...|+......+...+.
T Consensus 95 --sk~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 95 --KKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp --SHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred --hhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 1455553 66666532 34799998888877763
Done!