Query 008831
Match_columns 552
No_of_seqs 17 out of 19
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 17:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12718 Tropomyosin_1: Tropom 91.6 11 0.00025 34.9 15.5 123 26-175 7-129 (143)
2 PF09789 DUF2353: Uncharacteri 88.6 12 0.00025 39.6 13.9 158 282-452 2-227 (319)
3 PRK04863 mukB cell division pr 86.7 57 0.0012 40.7 20.0 74 9-82 265-342 (1486)
4 PRK11637 AmiB activator; Provi 86.0 49 0.0011 34.9 17.1 94 124-221 94-197 (428)
5 PF10168 Nup88: Nuclear pore c 85.8 12 0.00027 42.8 13.3 151 42-215 560-710 (717)
6 smart00502 BBC B-Box C-termina 84.4 20 0.00043 29.8 10.8 114 38-166 5-124 (127)
7 PF12128 DUF3584: Protein of u 83.4 1.1E+02 0.0024 36.8 20.3 228 2-246 625-907 (1201)
8 PF05667 DUF812: Protein of un 82.7 93 0.002 35.3 18.7 47 173-220 485-531 (594)
9 PF06160 EzrA: Septation ring 80.9 93 0.002 34.5 17.1 163 69-281 272-454 (560)
10 KOG0804 Cytoplasmic Zn-finger 80.3 27 0.00058 38.9 12.5 63 9-76 355-418 (493)
11 KOG2991 Splicing regulator [RN 77.9 67 0.0015 34.0 13.9 57 6-62 87-158 (330)
12 PF15397 DUF4618: Domain of un 77.3 94 0.002 32.2 15.7 86 49-152 8-107 (258)
13 PF05667 DUF812: Protein of un 77.2 1.1E+02 0.0024 34.8 16.4 105 38-170 326-435 (594)
14 PRK02224 chromosome segregatio 76.8 1.4E+02 0.0031 33.9 19.5 27 124-150 658-684 (880)
15 PHA02562 46 endonuclease subun 74.4 1.3E+02 0.0027 32.2 20.6 27 124-150 172-198 (562)
16 KOG0161 Myosin class II heavy 74.1 2.8E+02 0.0061 36.1 25.4 302 33-346 1379-1735(1930)
17 KOG0996 Structural maintenance 73.6 2.4E+02 0.0052 35.1 24.9 182 23-221 824-1025(1293)
18 KOG0977 Nuclear envelope prote 73.4 75 0.0016 36.0 13.8 97 40-151 42-138 (546)
19 PLN02939 transferase, transfer 73.1 2.2E+02 0.0049 34.5 19.4 31 21-51 151-181 (977)
20 KOG1029 Endocytic adaptor prot 71.5 2.4E+02 0.0051 34.1 21.1 67 152-218 540-609 (1118)
21 COG2433 Uncharacterized conser 71.5 50 0.0011 38.0 12.0 37 42-78 417-453 (652)
22 PF06160 EzrA: Septation ring 70.1 1.8E+02 0.004 32.3 20.1 55 427-481 471-525 (560)
23 PF05308 Mito_fiss_reg: Mitoch 68.3 4.3 9.4E-05 41.1 2.9 28 117-145 114-141 (253)
24 COG1579 Zn-ribbon protein, pos 67.5 1.5E+02 0.0033 30.3 16.1 130 122-267 85-225 (239)
25 PF04849 HAP1_N: HAP1 N-termin 67.1 85 0.0018 33.3 11.9 175 13-208 83-301 (306)
26 PF00038 Filament: Intermediat 66.1 1.5E+02 0.0031 29.6 21.8 51 41-91 5-55 (312)
27 PF06005 DUF904: Protein of un 66.0 46 0.001 28.2 8.1 45 306-350 18-62 (72)
28 TIGR02169 SMC_prok_A chromosom 65.4 2.6E+02 0.0056 32.2 23.8 15 521-535 1071-1085(1164)
29 PF06657 Cep57_MT_bd: Centroso 65.3 31 0.00066 29.5 7.0 53 121-173 12-73 (79)
30 PRK09039 hypothetical protein; 64.7 1.9E+02 0.0041 30.4 14.2 26 126-151 137-162 (343)
31 PF04156 IncA: IncA protein; 63.8 1.3E+02 0.0027 28.1 15.6 41 38-78 93-133 (191)
32 PF10224 DUF2205: Predicted co 63.1 39 0.00085 29.4 7.3 56 303-358 13-68 (80)
33 PRK10884 SH3 domain-containing 62.3 96 0.0021 30.8 10.7 50 33-82 118-167 (206)
34 cd07596 BAR_SNX The Bin/Amphip 62.1 1E+02 0.0022 28.1 10.3 84 12-98 103-193 (218)
35 PF10186 Atg14: UV radiation r 60.6 1.6E+02 0.0036 28.3 15.0 17 11-27 15-31 (302)
36 PF04111 APG6: Autophagy prote 59.5 2.2E+02 0.0048 29.6 13.2 33 130-176 110-142 (314)
37 PF01920 Prefoldin_2: Prefoldi 58.9 77 0.0017 26.4 8.2 33 119-151 55-87 (106)
38 PF00038 Filament: Intermediat 58.1 2E+02 0.0044 28.6 23.7 109 111-219 154-284 (312)
39 KOG0161 Myosin class II heavy 58.1 5.5E+02 0.012 33.6 27.4 251 39-347 1469-1764(1930)
40 TIGR00309 V_ATPase_subD H(+)-t 57.8 1.9E+02 0.0041 28.2 11.8 37 17-58 19-55 (209)
41 PRK03918 chromosome segregatio 57.2 3.4E+02 0.0073 30.8 22.6 23 127-149 315-337 (880)
42 PF08385 DHC_N1: Dynein heavy 56.9 2E+02 0.0043 30.6 12.7 35 35-69 219-253 (579)
43 PF08172 CASP_C: CASP C termin 56.1 1.4E+02 0.003 30.5 10.9 114 43-171 2-124 (248)
44 cd00632 Prefoldin_beta Prefold 55.6 1.4E+02 0.003 25.9 10.7 29 121-149 58-86 (105)
45 PRK09039 hypothetical protein; 53.8 2.9E+02 0.0063 29.1 17.8 39 182-220 168-206 (343)
46 KOG2685 Cystoskeletal protein 53.7 3.2E+02 0.0069 30.5 13.7 103 101-203 195-302 (421)
47 KOG0963 Transcription factor/C 53.7 3.4E+02 0.0073 31.7 14.3 29 124-152 247-275 (629)
48 PF06005 DUF904: Protein of un 52.8 1.1E+02 0.0025 25.9 8.2 59 142-200 6-67 (72)
49 TIGR02168 SMC_prok_B chromosom 52.6 4.1E+02 0.0088 30.4 20.9 25 312-336 1013-1037(1179)
50 PF07889 DUF1664: Protein of u 51.6 1.8E+02 0.004 27.2 10.1 88 116-221 27-123 (126)
51 PF07047 OPA3: Optic atrophy 3 50.9 28 0.0006 32.0 4.7 34 28-61 100-133 (134)
52 PF10481 CENP-F_N: Cenp-F N-te 50.9 1E+02 0.0022 32.7 9.2 23 127-149 96-118 (307)
53 PF05064 Nsp1_C: Nsp1-like C-t 50.4 53 0.0011 29.5 6.3 26 2-28 30-55 (116)
54 PRK04863 mukB cell division pr 48.5 6.8E+02 0.015 31.8 18.2 18 176-193 517-534 (1486)
55 PF00170 bZIP_1: bZIP transcri 47.7 70 0.0015 25.4 6.0 37 41-77 27-63 (64)
56 KOG0933 Structural maintenance 47.2 6.6E+02 0.014 31.3 17.6 28 126-153 843-870 (1174)
57 PRK10884 SH3 domain-containing 47.1 1.9E+02 0.0042 28.7 10.1 24 128-151 134-157 (206)
58 cd07651 F-BAR_PombeCdc15_like 46.9 2.8E+02 0.0062 27.0 11.2 45 2-46 97-141 (236)
59 PF00992 Troponin: Troponin; 46.1 69 0.0015 29.6 6.5 44 275-324 46-89 (132)
60 PF05557 MAD: Mitotic checkpoi 45.5 1.3E+02 0.0029 34.1 9.8 122 47-184 503-636 (722)
61 PF02388 FemAB: FemAB family; 44.9 1.7E+02 0.0037 31.0 10.0 64 101-177 226-289 (406)
62 PRK02224 chromosome segregatio 44.1 5.5E+02 0.012 29.4 20.4 26 127-152 483-508 (880)
63 PF11629 Mst1_SARAH: C termina 43.9 73 0.0016 26.0 5.4 38 162-199 9-46 (49)
64 PRK04778 septation ring format 43.6 5E+02 0.011 28.9 18.8 80 69-149 276-371 (569)
65 PF05557 MAD: Mitotic checkpoi 43.2 1.1E+02 0.0024 34.7 8.7 62 282-350 506-582 (722)
66 PF07083 DUF1351: Protein of u 43.1 3.4E+02 0.0074 26.8 12.8 108 29-146 60-168 (215)
67 PF14131 DUF4298: Domain of un 42.6 86 0.0019 27.1 6.2 64 49-113 2-70 (90)
68 KOG0977 Nuclear envelope prote 41.2 6.1E+02 0.013 29.2 14.2 126 54-188 99-231 (546)
69 TIGR00606 rad50 rad50. This fa 41.1 7.7E+02 0.017 30.3 21.9 11 110-120 296-306 (1311)
70 PF10474 DUF2451: Protein of u 39.2 4.1E+02 0.0089 26.6 11.2 100 89-194 53-154 (234)
71 PF08580 KAR9: Yeast cortical 39.0 6.9E+02 0.015 29.2 14.6 46 126-171 276-323 (683)
72 PTZ00046 rifin; Provisional 38.9 1.9E+02 0.0042 31.4 9.3 38 35-72 65-109 (358)
73 cd00632 Prefoldin_beta Prefold 38.5 2.4E+02 0.0052 24.5 8.3 26 124-149 68-93 (105)
74 PF01813 ATP-synt_D: ATP synth 38.4 2.8E+02 0.0061 26.5 9.5 38 17-59 11-48 (196)
75 PRK11637 AmiB activator; Provi 38.3 5.2E+02 0.011 27.5 23.3 87 124-215 168-254 (428)
76 TIGR02338 gimC_beta prefoldin, 38.1 2.8E+02 0.0061 24.4 9.3 26 125-150 80-105 (110)
77 PF07352 Phage_Mu_Gam: Bacteri 37.9 1.7E+02 0.0037 26.9 7.7 60 36-95 6-66 (149)
78 PF09738 DUF2051: Double stran 37.7 2.2E+02 0.0047 30.0 9.3 78 8-85 92-171 (302)
79 TIGR03185 DNA_S_dndD DNA sulfu 37.6 6.4E+02 0.014 28.4 15.6 43 128-170 232-278 (650)
80 PF15066 CAGE1: Cancer-associa 37.5 1.3E+02 0.0029 34.0 8.0 69 283-356 366-440 (527)
81 PF07798 DUF1640: Protein of u 36.7 3.6E+02 0.0078 25.5 9.9 74 126-199 73-158 (177)
82 cd07624 BAR_SNX7_30 The Bin/Am 35.7 4.1E+02 0.0089 25.6 13.7 80 41-120 15-96 (200)
83 PHA02562 46 endonuclease subun 34.5 6.1E+02 0.013 27.2 22.4 64 127-198 307-370 (562)
84 smart00338 BRLZ basic region l 34.4 1.3E+02 0.0028 23.9 5.6 36 41-76 27-62 (65)
85 TIGR00606 rad50 rad50. This fa 34.1 9.7E+02 0.021 29.5 27.2 106 41-151 495-602 (1311)
86 PF05266 DUF724: Protein of un 33.7 4.7E+02 0.01 25.7 10.7 71 6-76 87-167 (190)
87 PF08172 CASP_C: CASP C termin 33.5 88 0.0019 31.8 5.6 42 37-78 83-124 (248)
88 PF00170 bZIP_1: bZIP transcri 33.4 1.1E+02 0.0025 24.2 5.2 35 314-348 27-61 (64)
89 KOG0612 Rho-associated, coiled 33.1 1.1E+03 0.024 29.9 20.0 63 38-100 492-554 (1317)
90 PF01166 TSC22: TSC-22/dip/bun 33.1 35 0.00076 28.7 2.2 32 130-162 11-42 (59)
91 PF10805 DUF2730: Protein of u 32.6 79 0.0017 28.0 4.5 39 124-162 63-106 (106)
92 COG5185 HEC1 Protein involved 32.3 8.5E+02 0.018 28.2 21.4 157 62-231 265-430 (622)
93 TIGR01477 RIFIN variant surfac 32.2 2.4E+02 0.0053 30.6 8.7 37 35-71 68-111 (353)
94 PF13094 CENP-Q: CENP-Q, a CEN 32.1 2.3E+02 0.005 26.1 7.6 34 118-151 19-52 (160)
95 PF06008 Laminin_I: Laminin Do 32.1 5.2E+02 0.011 25.7 17.6 144 3-152 57-211 (264)
96 PF13118 DUF3972: Protein of u 31.9 62 0.0013 30.5 3.9 34 420-453 87-124 (126)
97 PF07106 TBPIP: Tat binding pr 31.9 2.8E+02 0.0061 25.7 8.2 26 125-150 115-140 (169)
98 PHA02047 phage lambda Rz1-like 31.8 2.1E+02 0.0045 26.4 7.0 57 127-208 28-84 (101)
99 PF04065 Not3: Not1 N-terminal 31.6 1E+02 0.0022 31.4 5.6 83 124-220 127-209 (233)
100 PRK13729 conjugal transfer pil 31.4 1.4E+02 0.0031 33.4 7.1 66 11-84 55-120 (475)
101 COG2900 SlyX Uncharacterized p 31.3 2.1E+02 0.0045 25.0 6.6 53 43-98 4-63 (72)
102 PF08232 Striatin: Striatin fa 31.1 1.1E+02 0.0024 28.3 5.3 56 7-76 6-61 (134)
103 KOG1853 LIS1-interacting prote 31.0 6.9E+02 0.015 26.8 12.4 47 32-78 26-76 (333)
104 PF03962 Mnd1: Mnd1 family; I 30.5 3.5E+02 0.0075 26.3 8.8 45 103-151 47-94 (188)
105 KOG4673 Transcription factor T 29.2 1.1E+03 0.024 28.6 16.7 70 9-78 369-440 (961)
106 KOG0250 DNA repair protein RAD 28.9 1.2E+03 0.027 29.0 21.8 47 124-170 406-452 (1074)
107 cd07627 BAR_Vps5p The Bin/Amph 28.8 5.1E+02 0.011 25.1 9.7 75 127-201 116-194 (216)
108 PF15619 Lebercilin: Ciliary p 28.6 5.8E+02 0.013 25.1 16.1 78 124-201 87-179 (194)
109 PF14193 DUF4315: Domain of un 28.6 1.4E+02 0.0031 26.1 5.3 37 128-171 3-39 (83)
110 PF12808 Mto2_bdg: Micro-tubul 28.6 89 0.0019 25.5 3.8 28 121-148 24-51 (52)
111 PF10174 Cast: RIM-binding pro 28.3 1.1E+03 0.023 28.2 21.4 51 11-75 113-163 (775)
112 PF09006 Surfac_D-trimer: Lung 28.3 79 0.0017 25.5 3.4 24 128-151 1-24 (46)
113 TIGR03789 pdsO proteobacterial 28.1 1.5E+02 0.0033 30.1 6.1 48 277-325 80-127 (239)
114 PF12709 Kinetocho_Slk19: Cent 28.1 1.6E+02 0.0035 26.3 5.5 41 43-83 45-85 (87)
115 PF04977 DivIC: Septum formati 27.8 2.2E+02 0.0049 22.5 6.0 34 42-75 19-52 (80)
116 PF12777 MT: Microtubule-bindi 27.7 2.7E+02 0.0059 28.9 8.1 100 31-131 233-335 (344)
117 PF10779 XhlA: Haemolysin XhlA 27.7 3.5E+02 0.0076 22.3 8.2 46 37-82 3-48 (71)
118 COG1196 Smc Chromosome segrega 27.7 1.2E+03 0.026 28.4 31.0 39 29-67 175-213 (1163)
119 PRK04778 septation ring format 27.5 9E+02 0.019 27.0 30.0 193 10-220 73-294 (569)
120 TIGR02894 DNA_bind_RsfA transc 27.4 2E+02 0.0044 28.2 6.6 46 306-351 104-149 (161)
121 COG2433 Uncharacterized conser 27.3 1.1E+03 0.024 27.9 14.8 45 38-82 420-464 (652)
122 TIGR03752 conj_TIGR03752 integ 26.9 5.7E+02 0.012 28.9 10.7 34 37-70 63-96 (472)
123 COG0216 PrfA Protein chain rel 26.1 5E+02 0.011 28.5 9.8 98 37-151 4-101 (363)
124 COG1711 DNA replication initia 26.1 2E+02 0.0043 29.6 6.5 84 126-220 32-115 (223)
125 PF06810 Phage_GP20: Phage min 25.7 1.7E+02 0.0037 27.7 5.7 40 39-78 26-68 (155)
126 KOG0963 Transcription factor/C 25.2 1.2E+03 0.025 27.6 15.5 85 125-220 120-208 (629)
127 KOG4572 Predicted DNA-binding 25.1 1.4E+03 0.03 28.4 14.7 50 121-170 1131-1180(1424)
128 COG1196 Smc Chromosome segrega 25.0 1.3E+03 0.028 28.0 30.2 43 294-337 972-1015(1163)
129 KOG1850 Myosin-like coiled-coi 25.0 9.6E+02 0.021 26.5 15.6 68 41-109 117-184 (391)
130 PRK14147 heat shock protein Gr 24.9 6.5E+02 0.014 24.4 10.0 45 126-170 18-63 (172)
131 cd00890 Prefoldin Prefoldin is 24.8 4.5E+02 0.0098 22.6 10.5 30 121-150 82-111 (129)
132 PF05266 DUF724: Protein of un 24.8 5.5E+02 0.012 25.3 9.1 70 282-351 89-176 (190)
133 PF15035 Rootletin: Ciliary ro 24.7 5.2E+02 0.011 25.3 8.9 45 38-82 65-116 (182)
134 KOG3119 Basic region leucine z 24.2 1.7E+02 0.0036 29.9 5.7 32 42-73 217-248 (269)
135 PF01025 GrpE: GrpE; InterPro 23.9 1.8E+02 0.0038 26.6 5.3 126 126-265 11-149 (165)
136 smart00353 HLH helix loop heli 23.9 82 0.0018 23.4 2.7 40 85-136 13-52 (53)
137 KOG3540 Beta amyloid precursor 23.9 6.4E+02 0.014 29.1 10.4 17 154-170 348-364 (615)
138 cd07596 BAR_SNX The Bin/Amphip 23.9 5.6E+02 0.012 23.4 15.9 70 129-200 120-195 (218)
139 PRK15422 septal ring assembly 23.7 4.9E+02 0.011 23.1 7.6 58 293-350 5-69 (79)
140 PF07412 Geminin: Geminin; In 23.7 2.3E+02 0.0051 28.6 6.4 58 37-98 122-179 (200)
141 cd04766 HTH_HspR Helix-Turn-He 23.5 94 0.002 26.1 3.2 26 124-150 64-89 (91)
142 KOG4687 Uncharacterized coiled 23.5 2E+02 0.0044 30.9 6.3 44 278-324 19-62 (389)
143 PF05911 DUF869: Plant protein 22.8 7.8E+02 0.017 29.3 11.2 45 34-78 618-662 (769)
144 PF06156 DUF972: Protein of un 22.7 2.5E+02 0.0055 25.4 5.9 44 303-347 13-56 (107)
145 COG5374 Uncharacterized conser 22.6 1.7E+02 0.0036 29.5 5.1 77 83-175 94-178 (192)
146 PF06698 DUF1192: Protein of u 22.5 90 0.0019 26.0 2.8 38 108-147 12-49 (59)
147 PRK00888 ftsB cell division pr 22.5 3.2E+02 0.0069 24.4 6.5 36 41-76 28-63 (105)
148 TIGR00019 prfA peptide chain r 22.5 3.8E+02 0.0081 29.1 8.1 92 36-151 3-100 (360)
149 PF14389 Lzipper-MIP1: Leucine 22.3 3E+02 0.0066 23.9 6.1 29 39-67 7-35 (88)
150 PF12711 Kinesin-relat_1: Kine 22.2 3.1E+02 0.0067 24.4 6.2 57 289-348 9-65 (86)
151 KOG0243 Kinesin-like protein [ 22.2 1.6E+03 0.034 28.0 25.3 56 33-88 448-503 (1041)
152 KOG4603 TBP-1 interacting prot 21.5 5.4E+02 0.012 26.1 8.4 67 127-193 87-170 (201)
153 PLN02939 transferase, transfer 21.3 1.6E+03 0.035 27.7 14.7 39 284-322 298-340 (977)
154 KOG1962 B-cell receptor-associ 20.9 8.4E+02 0.018 25.0 9.7 27 126-152 186-212 (216)
155 PF12711 Kinesin-relat_1: Kine 20.9 6E+02 0.013 22.6 7.9 57 128-186 26-84 (86)
156 COG5244 NIP100 Dynactin comple 20.9 2.1E+02 0.0046 32.8 6.0 47 124-170 227-283 (669)
157 PHA02629 A-type inclusion body 20.7 2.3E+02 0.005 23.7 4.8 49 38-90 1-58 (61)
158 COG3937 Uncharacterized conser 20.4 1.1E+02 0.0023 28.5 3.1 42 102-150 66-107 (108)
159 PF04156 IncA: IncA protein; 20.1 7.1E+02 0.015 23.2 14.7 44 38-81 79-122 (191)
160 PF02841 GBP_C: Guanylate-bind 20.1 9.2E+02 0.02 24.5 10.7 28 8-35 180-209 (297)
161 PF08826 DMPK_coil: DMPK coile 20.0 4.5E+02 0.0096 22.0 6.4 39 41-79 19-57 (61)
No 1
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.60 E-value=11 Score=34.88 Aligned_cols=123 Identities=26% Similarity=0.342 Sum_probs=84.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhh
Q 008831 26 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK 105 (552)
Q Consensus 26 mEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eK 105 (552)
+|++-|-++-+..-+++.+++.|.....-.+.....-|..|..++..+.++......-.. ..+.
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-----------e~~~----- 70 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-----------ESEK----- 70 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHH-----
Confidence 466666777777777888888888777777777777777777777777777664433222 1111
Q ss_pred hchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 008831 106 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK 175 (552)
Q Consensus 106 cs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk 175 (552)
.-+=++ +..+-|.-||++|+.....+.-..-+||=.=.=-.|+-|+|..||.+..-+.+
T Consensus 71 ----------~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 71 ----------RKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred ----------HHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 000011 46788999999999998888888888774322234889999999988765543
No 2
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.57 E-value=12 Score=39.59 Aligned_cols=158 Identities=32% Similarity=0.379 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHh-----------hhHHHHHHHHHHH-----------------Hhhhhh---chHHH
Q 008831 282 QALQEKVAALLLLSQQEERHLLERN-----------VNSALQKKIEELQ-----------------RNLFQV---TTEKV 330 (552)
Q Consensus 282 QALqEKv~ALlLlSQqeER~llE~~-----------~n~~Lq~~ieeLQ-----------------rNl~QV---t~EKV 330 (552)
+-|+-|++||+.||++=|.+-.|+. +.++|.++..++. .+|.|. +-|..
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 3589999999999998887777763 4567777777777 333321 33334
Q ss_pred HHH-HHHHhHHHHHHH-------HHHHhhhhhhhhhcccCCCcccccccccchhhHhhhh--------------------
Q 008831 331 KAL-MELAQLKQDYQL-------LQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLK-------------------- 382 (552)
Q Consensus 331 kaL-mELAqLkqey~l-------L~e~~~~~~k~~h~~~~~~~r~i~~~~rdG~lknilk-------------------- 382 (552)
+.| -|+..|+|.+.- |+++....+-. .-+.|.+ ...|+|...+..|-+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~---~~~~~~~-~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG---DEGIGAR-HFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh---hcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 466677776544 44333211111 1122222 333888877777665
Q ss_pred -----hhhHhhhhccCCCCCCcCcCCCccccCccccccCccchhhhhhchhhHHHHHHhhHHH----HHHHHHHHHHHH
Q 008831 383 -----KTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHL----ISSIRRLRLSLS 452 (552)
Q Consensus 383 -----rtyLr~Wi~~~d~sG~~~~~~~~s~~~~~~~~~~s~D~ARmKvENAtLkEsvesmehL----TSSihRLrl~L~ 452 (552)
|.+.|.=...+| ++=---++++.+ .-+|+.-+-.||--|+|.+...+-= -++|-+..-+|-
T Consensus 158 El~~ERD~yk~K~~RLN---~ELn~~L~g~~~------rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 158 ELVTERDAYKCKAHRLN---HELNYILNGDEN------RIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhCCCCC------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 000000111111 2679999999999999999876643 344555554444
No 3
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.70 E-value=57 Score=40.67 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=63.6
Q ss_pred hhhhHHHHHHh----hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHH
Q 008831 9 FFQGCMAAAFA----ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 82 (552)
Q Consensus 9 FFQs~VA~AFA----ERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~k 82 (552)
-+|+-||++|. ||-.-|=||=+.+++-+....++...+.++.++...+.+.+..-..|+.+.+..++..+...+
T Consensus 265 ~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 265 ESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred hhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999995 788888899999999999999999999999999888888888888888888888877665554
No 4
>PRK11637 AmiB activator; Provisional
Probab=86.03 E-value=49 Score=34.87 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh-------hhh-HHH--HHHHHHHHHHhhhhhHH
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI-------IHS-DKF--ISNAIAELRLCHSQLRV 193 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkq-------i~~-dk~--i~Ngis~Lq~~h~~~R~ 193 (552)
+..-|+.++.+++.+...|+.+|.+|.-- ..-|.+++|.+-+.. ++. +.| +. .+..+-.+..+.|.
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~---~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~-r~~~~l~~i~~~d~ 169 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQ---ERLLAAQLDAAFRQGEHTGLQLILSGEESQRGE-RILAYFGYLNQARQ 169 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHH-HHHHHHHHHHHHHH
Confidence 44666777777777777777776665432 233566777776632 111 111 11 22333344556788
Q ss_pred HHHHhhhhcchhhhhHHHHHHHhhhccc
Q 008831 194 HVVNSLEEGRSHIKSISDVIEEKTQHCD 221 (552)
Q Consensus 194 ~Im~lL~ee~s~iks~v~~ieekl~~~~ 221 (552)
.+++-+.+....+......+++++.++.
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l~ 197 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQK 197 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887777663
No 5
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.83 E-value=12 Score=42.77 Aligned_cols=151 Identities=14% Similarity=0.188 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCC
Q 008831 42 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND 121 (552)
Q Consensus 42 f~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~ 121 (552)
-.+|++|+.-++.....|-.-=..||.+...+.+.. .+.-+||-+++.+-- ....+|..+|.-.. ...
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~a---e~LaeR~e~a~d~Qe-----~L~~R~~~vl~~l~----~~~ 627 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESA---EKLAERYEEAKDKQE-----KLMKRVDRVLQLLN----SQL 627 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh----ccC
Confidence 346777777666665555544444555544443333 355566666654311 34456666655332 223
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 008831 122 TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 201 (552)
Q Consensus 122 tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~e 201 (552)
+..|.+=.+.-+||+.++.++..|++.|.-- -+=+.+..+.++++.-.. .+.+ ..=..|+..|-++|.+
T Consensus 628 P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l---k~k~~~Q~~~i~~~~~~~----~~s~----~L~~~Q~~~I~~iL~~ 696 (717)
T PF10168_consen 628 PVLSEAEREFKKELERMKDQLQDLKASIEQL---KKKLDYQQRQIESQKSPK----KKSI----VLSESQKRTIKEILKQ 696 (717)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcccccc----CCCc----cCCHHHHHHHHHHHHH
Confidence 4455555556666666666655555444321 000111111222111000 0100 1235688899999999
Q ss_pred cchhhhhHHHHHHH
Q 008831 202 GRSHIKSISDVIEE 215 (552)
Q Consensus 202 e~s~iks~v~~iee 215 (552)
....|+.+|+.|..
T Consensus 697 ~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 697 QGEEIDELVKQIKN 710 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 6
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=84.36 E-value=20 Score=29.83 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHH-Hhhhhhhhhccchhhhhchhccccccc
Q 008831 38 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYE-IRQQSLEVLETSWEDKCACLLLDSAEM 116 (552)
Q Consensus 38 m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFye-iR~~~~e~~~~s~~eKcs~LL~DS~e~ 116 (552)
+...++.+..+..+.+..+..... ....++++.+....-|..+|+ ++. -.++.-..||.+-...
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~-------~~~~l~~~~~~~~~~I~~~f~~l~~--------~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLIS-------IIQEVEENAADVEAQIKAAFDELRN--------ALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 344445555555555444443333 333344444444455544443 222 2334444555555554
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhh-----HHHHHHhHHhHHHH
Q 008831 117 WSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG-----LEIENHLKKSVREL 166 (552)
Q Consensus 117 WSfn~tStskyIsALEeEle~lrasi~~LQskLRvG-----LEIEnHLkk~vr~L 166 (552)
+.=...+....+..|+..++.+..-++..+.-|.-| |...+++..+++.|
T Consensus 70 ~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 70 KENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 444445577888888888888888888888888875 44446666665554
No 7
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.42 E-value=1.1e+02 Score=36.84 Aligned_cols=228 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHH
Q 008831 2 EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 81 (552)
Q Consensus 2 e~EKQVkFFQs~VA~AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~ 81 (552)
++|++.+=.+..+..+-.+-..+-.+.+.++..-+..-......+.+..+.... -...++..+..++.+...+.
T Consensus 625 ~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 625 ELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEE------RKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh---------h
Q 008831 82 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRM---------G 152 (552)
Q Consensus 82 kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRv---------G 152 (552)
+=+.+|=+=...........+..+...+..+ ....|+++.+++...++..+.-...|.. |
T Consensus 699 ~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~-----------~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~G 767 (1201)
T PF12128_consen 699 QELEELLEELKEQLKELRNELKAQWQELEAE-----------LDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKG 767 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred HHHHHH--hHHhHHHHHHhh----------hhhHHHHHHH-------------------------------HHHHHHhhh
Q 008831 153 LEIENH--LKKSVRELEKKI----------IHSDKFISNA-------------------------------IAELRLCHS 189 (552)
Q Consensus 153 LEIEnH--Lkk~vr~LEKkq----------i~~dk~i~Ng-------------------------------is~Lq~~h~ 189 (552)
....-. |++.+..|+++. +-|++|+..- +..++..+.
T Consensus 768 vD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 847 (1201)
T PF12128_consen 768 VDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVK 847 (1201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHH---HHhhhhcchhhhhHHHHHHHhhhcccccccccccCCCccccccccccccce
Q 008831 190 QLRVHV---VNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDV 246 (552)
Q Consensus 190 ~~R~~I---m~lL~ee~s~iks~v~~ieekl~~~~d~~~e~n~~P~q~e~~~~e~ecrDV 246 (552)
..|..+ .+.+++.-..+......+..-+..+.++....+..++.++..-+-..|.+.
T Consensus 848 ~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1201)
T PF12128_consen 848 QRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAEGSVDERLRDLEDL 907 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHHHHHHHHH
No 8
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.66 E-value=93 Score=35.34 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhcc
Q 008831 173 SDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHC 220 (552)
Q Consensus 173 ~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~~ 220 (552)
.-.....+|.+|=+---+|+++|.++|.|-+. |..=||.+..||.+.
T Consensus 485 ~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~-lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 485 NRSAYTRRILEIVKNIRKQKEEIEKILSDTRE-LQKEINSLTGKLDRT 531 (594)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhH
Confidence 34455677888888888999999999999875 555678888888655
No 9
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.87 E-value=93 Score=34.51 Aligned_cols=163 Identities=18% Similarity=0.288 Sum_probs=101.8
Q ss_pred hHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 008831 69 DLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 148 (552)
Q Consensus 69 dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQsk 148 (552)
++..-++.++....-|+.+|++=.+...+... ..... ..+..||..+.+....|...++.+++.
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~-V~~~~---------------~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKY-VEKNL---------------KELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677778888888899999887766655532 11111 125689999999999999999999988
Q ss_pred hhhh---HHHHHHhHHhHHHHHHhhhhhHHHH-----------------HHHHHHHHHhhhhhHHHHHHhhhhcchhhhh
Q 008831 149 LRMG---LEIENHLKKSVRELEKKIIHSDKFI-----------------SNAIAELRLCHSQLRVHVVNSLEEGRSHIKS 208 (552)
Q Consensus 149 LRvG---LEIEnHLkk~vr~LEKkqi~~dk~i-----------------~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks 208 (552)
-..- ++.-+.|.+++..|+++-.....-| ...|..+...|......+.+|=.+| ...+.
T Consensus 336 Y~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE-~~Ar~ 414 (560)
T PF06160_consen 336 YTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDE-KEARE 414 (560)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 7763 3444456777777777664333322 2344555555555555554443333 33344
Q ss_pred HHHHHHHhhhcccccccccccCCCccccccccccccceeeccCCCCccccCCCCCccchhhhcccCCchHHHH
Q 008831 209 ISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLA 281 (552)
Q Consensus 209 ~v~~ieekl~~~~d~~~e~n~~P~q~e~~~~e~ecrDVHvs~d~~p~~~~k~~~ps~~~~~~d~~~d~S~alA 281 (552)
.+..++.+|..+. -.+.+.|+|+++...-|..++.++-+-
T Consensus 415 ~l~~~~~~l~~ik---------------------------------R~lek~nLPGlp~~y~~~~~~~~~~i~ 454 (560)
T PF06160_consen 415 KLQKLKQKLREIK---------------------------------RRLEKSNLPGLPEDYLDYFFDVSDEIE 454 (560)
T ss_pred HHHHHHHHHHHHH---------------------------------HHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4444455544442 235688999998877777777766543
No 10
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.28 E-value=27 Score=38.92 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=43.7
Q ss_pred hhhhHHHHHHh-hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 008831 9 FFQGCMAAAFA-ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 76 (552)
Q Consensus 9 FFQs~VA~AFA-ERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq 76 (552)
+|-...--|=+ +-|.+.+|++| ..|.++..+++.+++..+++...+++.|-.|+.++-....+
T Consensus 355 ~~e~~~~e~~~l~~~~~~~e~~k-----k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 355 YYELLITEADSLKQESSDLEAEK-----KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333333333 56677777543 57888888899999999998888888888887776554433
No 11
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=77.93 E-value=67 Score=33.99 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=30.4
Q ss_pred hhhhhhhHHHHHHhhhcchhH-HH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008831 6 QVKFFQGCMAAAFAERDNSVM-EA--------------EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 62 (552)
Q Consensus 6 QVkFFQs~VA~AFAERD~slm-Ea--------------EKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~l 62 (552)
+-+-|++-|+++=+-|-.-+. +. +-|+.+|....-.++.-++-+-||.|++-+.|.+
T Consensus 87 s~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~q 158 (330)
T KOG2991|consen 87 SWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQ 158 (330)
T ss_pred HHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777776655433221 23 3344444444445555555566666666665543
No 12
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.34 E-value=94 Score=32.19 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHhH-----------HhHHH---HHHHHHHHhhhhhhhhccchhhhhchhccccc
Q 008831 49 LEELSSENIELKKQNATLRFDLEKQEELN-----------ESFKE---VINKFYEIRQQSLEVLETSWEDKCACLLLDSA 114 (552)
Q Consensus 49 ~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~-----------e~~~k---VI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~ 114 (552)
++||.+-+......|..|....--.++.+ +.|.. +|+..+.-+-....+-..+|++|-
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~-------- 79 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKE-------- 79 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH--------
Confidence 56777778888888888877665544433 33333 444455555555666556787773
Q ss_pred cccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 008831 115 EMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 152 (552)
Q Consensus 115 e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvG 152 (552)
.+=++.|+++++.|++.|.+.|-.|++=
T Consensus 80 ----------e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 80 ----------ESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred ----------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999983
No 13
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.24 E-value=1.1e+02 Score=34.81 Aligned_cols=105 Identities=30% Similarity=0.353 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhcc--chhhhhchhcccccc
Q 008831 38 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET--SWEDKCACLLLDSAE 115 (552)
Q Consensus 38 m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~--s~~eKcs~LL~DS~e 115 (552)
--+++.++++.+.++.+++.....--..|+..+....+.++.... ..+.... ...+|---||.|+..
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~-----------~~~~le~~~~l~~k~~~lL~d~e~ 394 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEA-----------ENEELEEELKLKKKTVELLPDAEE 394 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhcCcHH
Confidence 344555555555555555555555555555555444444432211 1112222 445566667777765
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH---hHHhHHHHHHhh
Q 008831 116 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH---LKKSVRELEKKI 170 (552)
Q Consensus 116 ~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnH---Lkk~vr~LEKkq 170 (552)
| |+.|+.-++.-.+.+..|+++.- .| |....|.|+.+.
T Consensus 395 n-----------i~kL~~~v~~s~~rl~~L~~qWe------~~R~pL~~e~r~lk~~~ 435 (594)
T PF05667_consen 395 N-----------IAKLQALVEASEQRLVELAQQWE------KHRAPLIEEYRRLKEKA 435 (594)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHH
Confidence 5 78899999999999999888652 33 555555555443
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=76.76 E-value=1.4e+02 Score=33.93 Aligned_cols=27 Identities=22% Similarity=0.585 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLR 150 (552)
....+..++++++.++..++.|..++.
T Consensus 658 ~~~~~~~l~~~l~~~~~~~~~l~~~i~ 684 (880)
T PRK02224 658 AEEYLEQVEEKLDELREERDDLQAEIG 684 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666777777776664
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.38 E-value=1.3e+02 Score=32.18 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLR 150 (552)
...|+..++++++.+++++..+++++.
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888774
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.07 E-value=2.8e+02 Score=36.06 Aligned_cols=302 Identities=22% Similarity=0.228 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhh---chh
Q 008831 33 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKC---ACL 109 (552)
Q Consensus 33 EkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKc---s~L 109 (552)
|--...-+.+.+.+++++.+...+...++..-.||.++..+.--++....++ -|.+-.+...+-..+.|..|| ++.
T Consensus 1379 e~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~-~~le~k~k~f~k~l~e~k~~~e~l~~E 1457 (1930)
T KOG0161|consen 1379 ELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAV-AALEKKQKRFEKLLAEWKKKLEKLQAE 1457 (1930)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456778889999999999999998888888888776655554333222 244444444444555665555 566
Q ss_pred ccccccccccCCcchHHHHHHHHHHHH---HHHHhHHHHHhhhhhhHHHHHH-------hHHhHHHHHHh----hhhhHH
Q 008831 110 LLDSAEMWSFNDTSTSKYISALEDELE---KTRSSVENLQSKLRMGLEIENH-------LKKSVRELEKK----IIHSDK 175 (552)
Q Consensus 110 L~DS~e~WSfn~tStskyIsALEeEle---~lrasi~~LQskLRvGLEIEnH-------Lkk~vr~LEKk----qi~~dk 175 (552)
++-....|.=-+|...++--+|++-++ .++..-.+|++.+.=--.=.+- |++..|.||.. |.-++.
T Consensus 1458 ld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE 1537 (1930)
T KOG0161|consen 1458 LDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE 1537 (1930)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777776554 3333333444433211000011 23333333333 111111
Q ss_pred HHH------HHHHHHHHhhhhhHHHHHHhhhhcc-----------hhhhhHHHHHHHhhhcccccccccccCCCcc----
Q 008831 176 FIS------NAIAELRLCHSQLRVHVVNSLEEGR-----------SHIKSISDVIEEKTQHCDDVIRGQNTGTYQR---- 234 (552)
Q Consensus 176 ~i~------Ngis~Lq~~h~~~R~~Im~lL~ee~-----------s~iks~v~~ieekl~~~~d~~~e~n~~P~q~---- 234 (552)
.-. ...--++--+.+.|.+|..-|.+-. ..|.++.+.+++..+ .-.+....|.--
T Consensus 1538 lE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r----~k~e~~r~KKkle~di 1613 (1930)
T KOG0161|consen 1538 LEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETR----SKSEALRSKKKLEGDI 1613 (1930)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHhhhhhhhcch
Confidence 111 1111144456677777766653311 112222222222111 111222332100
Q ss_pred ---ccccccccccceeeccCCCCccccCCCCCccchhhhcccCCchHHHHHHH--HHHHHHHH---------hhchHHHH
Q 008831 235 ---ETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQAL--QEKVAALL---------LLSQQEER 300 (552)
Q Consensus 235 ---e~~~~e~ecrDVHvs~d~~p~~~~k~~~ps~~~~~~d~~~d~S~alAQAL--qEKv~ALl---------LlSQqeER 300 (552)
+++++.+.-. .+...++...-...+|.+..-.-|...-..+++||.. ..|.+||- +=+..-.|
T Consensus 1614 ~elE~~ld~ank~---~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rar 1690 (1930)
T KOG0161|consen 1614 NELEIQLDHANKA---NEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERAR 1690 (1930)
T ss_pred HHHHHHHHHHHHh---hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1111222333344455555555566666677776542 33444331 22233455
Q ss_pred HHHHHhhhHHHHHHHHHHHHhh---hhhchHHHHHHHHHHhHHHHHHHH
Q 008831 301 HLLERNVNSALQKKIEELQRNL---FQVTTEKVKALMELAQLKQDYQLL 346 (552)
Q Consensus 301 ~llE~~~n~~Lq~~ieeLQrNl---~QVt~EKVkaLmELAqLkqey~lL 346 (552)
-.+|...+.. .|.++... +..+++|-|.=-+|++|..++..-
T Consensus 1691 r~aE~e~~E~----~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~ 1735 (1930)
T KOG0161|consen 1691 RQAELELEEL----AERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEE 1735 (1930)
T ss_pred HhhHHHHHHH----HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 5666655544 66777755 557889999999999999887653
No 17
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.64 E-value=2.4e+02 Score=35.11 Aligned_cols=182 Identities=20% Similarity=0.204 Sum_probs=110.4
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhh
Q 008831 23 NSVMEAEKAKEKEELMSQKFNEFQTR----------LEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 92 (552)
Q Consensus 23 ~slmEaEKAKEkEE~m~qkf~~f~~R----------~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~ 92 (552)
.-.|++-.+.+.++.+-+.+++.+.+ +++++..+.+.++.=+++|-.-++ +++.+.+...|..-+.++.
T Consensus 824 ~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~ 902 (1293)
T KOG0996|consen 824 KLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKV 902 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhh
Confidence 34455556666666666666666544 577777777777777888855555 7888888889988887765
Q ss_pred hhhhhhccc---hhh-------hhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHh
Q 008831 93 QSLEVLETS---WED-------KCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 162 (552)
Q Consensus 93 ~~~e~~~~s---~~e-------Kcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~ 162 (552)
+-...-.++ --+ ||++-+--+. |. -+...+-++-||.+.+.++.+++.|-. -.+|+...
T Consensus 903 q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~--~~--i~k~q~~l~~le~~~~~~e~e~~~L~e-------~~~~~~~k 971 (1293)
T KOG0996|consen 903 QAQKDKVEKINEQLDKLEADIAKLTVAIKTSD--RN--IAKAQKKLSELEREIEDTEKELDDLTE-------ELKGLEEK 971 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCc--cc--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHH
Confidence 544333332 222 3333332221 11 223445566666666666666666543 33455555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhccc
Q 008831 163 VRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCD 221 (552)
Q Consensus 163 vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~~~ 221 (552)
+-+++++-- =-.++|-+++.-|...+..+-++=+.+-..-...|+ |+.|+..++
T Consensus 972 ~~E~~~~~~----e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~ 1025 (1293)
T KOG0996|consen 972 AAELEKEYK----EAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAIN 1025 (1293)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHH
Confidence 555555432 235788888888888888877766555554444666 777776653
No 18
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=73.35 E-value=75 Score=36.02 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhcccccccccc
Q 008831 40 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 119 (552)
Q Consensus 40 qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSf 119 (552)
+.+.+++.|+--|=...--.+.+|..|++|+..+..---.-..=|.-+|+.=- -.|.-+|++.+.-
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El-----------~~ar~~l~e~~~~--- 107 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAEL-----------ATARKLLDETARE--- 107 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhH-----------HHHHHHHHHHHHH---
Confidence 34677888999998888889999999999999886543322234555665422 2344455554322
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 120 NDTSTSKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 120 n~tStskyIsALEeEle~lrasi~~LQskLRv 151 (552)
-+....=|..|++|++.++.++++.+.-++.
T Consensus 108 -ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~ 138 (546)
T KOG0977|consen 108 -RAKLEIEITKLREELKELRKKLEKAEKERRG 138 (546)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 0112234788899999999999888665544
No 19
>PLN02939 transferase, transferring glycosyl groups
Probab=73.13 E-value=2.2e+02 Score=34.52 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.2
Q ss_pred hcchhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008831 21 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEE 51 (552)
Q Consensus 21 RD~slmEaEKAKEkEE~m~qkf~~f~~R~eE 51 (552)
|=++|=+++|+--..|+.-.+++-++.|+.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 151 RLQALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 5567777888766667788899999999998
No 20
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.52 E-value=2.4e+02 Score=34.11 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=42.8
Q ss_pred hHHHHHHhHHhHHHHHHhhh-hhH--HHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhh
Q 008831 152 GLEIENHLKKSVRELEKKII-HSD--KFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQ 218 (552)
Q Consensus 152 GLEIEnHLkk~vr~LEKkqi-~~d--k~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~ 218 (552)
-=+|-|||+..+-+|+|... .+. ..+.|-+.+|+-.|..+-..--.+.+-+..-++-+--.+-+++.
T Consensus 540 ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~ 609 (1118)
T KOG1029|consen 540 KELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIG 609 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999875 222 34578889999888776555555555444444433333333333
No 21
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.49 E-value=50 Score=38.05 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 42 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 42 f~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
+....+|+..+......+++.|..|+..++.++.-.+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie 453 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIE 453 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777777766666654433
No 22
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=70.13 E-value=1.8e+02 Score=32.28 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=43.0
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccchhHhHHHHHHHHHHH
Q 008831 427 NATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLV 481 (552)
Q Consensus 427 NAtLkEsvesmehLTSSihRLrl~L~Kv~e~v~s~~t~~~~~eal~~ii~EA~l~ 481 (552)
|..|.+....|++|...++-|.-.-.-|-...--+--..+..+-++.-+++|..+
T Consensus 471 ~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~ 525 (560)
T PF06160_consen 471 NKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEAEDL 525 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 6778888888999988888887776666666666777778888888888888653
No 23
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=68.31 E-value=4.3 Score=41.15 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=21.7
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhHHHH
Q 008831 117 WSFNDTSTSKYISALEDELEKTRSSVENL 145 (552)
Q Consensus 117 WSfn~tStskyIsALEeEle~lrasi~~L 145 (552)
+.-|.+. .+=|+|||.||-.||++|+++
T Consensus 114 ~~~~~~A-lqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 114 LPANEAA-LQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred cCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 356899999999999999975
No 24
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.46 E-value=1.5e+02 Score=30.34 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHH-------hHHHHHHhhhhhHHHHHHHHHHHH---Hhhhhh
Q 008831 122 TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKK-------SVRELEKKIIHSDKFISNAIAELR---LCHSQL 191 (552)
Q Consensus 122 tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk-------~vr~LEKkqi~~dk~i~Ngis~Lq---~~h~~~ 191 (552)
.++.+-.+||+.|.++++..+..|-..|.=-.+...+|.+ ++..+|+...-+-.-+...+..++ +-|.++
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~ 164 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSK 164 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477788888888888877777777777655555555443 444444444444455555555554 467777
Q ss_pred HHHHHHhhhhcchhhhhHHHHHHHhhhcccccccccccCCCccccccccccccceeec-cCCCCccccCCCCCccch
Q 008831 192 RVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHIN-NDADTNLVSQRNDPAYCD 267 (552)
Q Consensus 192 R~~Im~lL~ee~s~iks~v~~ieekl~~~~d~~~e~n~~P~q~e~~~~e~ecrDVHvs-~d~~p~~~~k~~~ps~~~ 267 (552)
|+++..=|..+ +.-.++.-...- -..+..++...-|.--||- |...-+.|.+.|.+..|.
T Consensus 165 ~~~L~~~l~~e------ll~~yeri~~~~----------kg~gvvpl~g~~C~GC~m~l~~~~~~~V~~~d~iv~CP 225 (239)
T COG1579 165 REELKEKLDPE------LLSEYERIRKNK----------KGVGVVPLEGRVCGGCHMKLPSQTLSKVRKKDEIVFCP 225 (239)
T ss_pred HHHHHHhcCHH------HHHHHHHHHhcC----------CCceEEeecCCcccCCeeeecHHHHHHHhcCCCCccCC
Confidence 77776555433 222222222111 0134455667788888874 333444556666555543
No 25
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.10 E-value=85 Score=33.28 Aligned_cols=175 Identities=19% Similarity=0.250 Sum_probs=100.1
Q ss_pred HHHHHHhhhcchhHHHHH-----hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------------------Hh-h
Q 008831 13 CMAAAFAERDNSVMEAEK-----AKEKEELMSQKFNEFQTRLEE---LSSENIELK--------------------KQ-N 63 (552)
Q Consensus 13 ~VA~AFAERD~slmEaEK-----AKEkEE~m~qkf~~f~~R~eE---~~S~~~~qK--------------------~l-N 63 (552)
.+.++.-++-+.|+|-=. -...-+.+.|-=+++..|-+- |+++.++-. .. -
T Consensus 83 ~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (306)
T PF04849_consen 83 RIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQL 162 (306)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhH
Confidence 455666677777764311 122335566666777788776 443332211 11 2
Q ss_pred HHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHH--------
Q 008831 64 ATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDEL-------- 135 (552)
Q Consensus 64 ~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEl-------- 135 (552)
++||.-+..+++.|..+..=.++ ++. -..++++|-+-|+.|-..+- ++.+.=|+.|.+||
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~---L~~-----et~~~EekEqqLv~dcv~QL----~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQ---LKT-----ETDTYEEKEQQLVLDCVKQL----SEANQQIASLSEELARKTEENR 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhH-----HHhhccHHHHHHHHHHHHHh----hhcchhHHHHHHHHHHHHHHHH
Confidence 78999999999999854432221 111 01188999999998876653 23456677777776
Q ss_pred ------HHHHHhHHHHHhhhhh-hHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhh
Q 008831 136 ------EKTRSSVENLQSKLRM-GLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKS 208 (552)
Q Consensus 136 ------e~lrasi~~LQskLRv-GLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks 208 (552)
.+|.++|..||++++. |.|=|..-+.=+..-+- +.-+..-+.+||--|. +++.+|.|-...+++
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~-----Q~~L~aEL~elqdkY~----E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKES-----QRQLQAELQELQDKYA----ECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 6678999999999987 44433221111111111 1112334666666553 566666665555544
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=66.09 E-value=1.5e+02 Score=29.56 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHh
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 91 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR 91 (552)
.++.++.|+..|=...-.....|..|+.++..+......-..-+..+|+--
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~e 55 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEE 55 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhH
Confidence 456777788888777777788899999888888776433233355555543
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.04 E-value=46 Score=28.19 Aligned_cols=45 Identities=29% Similarity=0.269 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHh
Q 008831 306 NVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKI 350 (552)
Q Consensus 306 ~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~~ 350 (552)
.++..||..+++|++.-.+..++.-..--|..||++++...++++
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777776655556666666667777777776666554
No 28
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=65.40 E-value=2.6e+02 Score=32.17 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=7.2
Q ss_pred ccccccchhhHHHHH
Q 008831 521 KMDSVSAAGFEMVEL 535 (552)
Q Consensus 521 k~D~vsaAg~EMVEL 535 (552)
.+..+|++=-.+|-|
T Consensus 1071 ~~~~lSgge~~~~~l 1085 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTAL 1085 (1164)
T ss_pred cchhcCcchHHHHHH
Confidence 344555544445544
No 29
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=65.33 E-value=31 Score=29.50 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=44.4
Q ss_pred CcchHHHHHHHHHHHHHHHHhHHHHHhhhh---------hhHHHHHHhHHhHHHHHHhhhhh
Q 008831 121 DTSTSKYISALEDELEKTRSSVENLQSKLR---------MGLEIENHLKKSVRELEKKIIHS 173 (552)
Q Consensus 121 ~tStskyIsALEeEle~lrasi~~LQskLR---------vGLEIEnHLkk~vr~LEKkqi~~ 173 (552)
+.+.+.-|.+||.|++.++-....||..++ ..=.+++||.+-|..||.|--.+
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999976664 35789999999999999986433
No 30
>PRK09039 hypothetical protein; Validated
Probab=64.75 E-value=1.9e+02 Score=30.42 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 126 KYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLRv 151 (552)
.-|..|.+|++.||+++..||.-|..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666554
No 31
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.83 E-value=1.3e+02 Score=28.05 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 38 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 38 m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
+-+++.+++++..++++....++.....++.++...++..+
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 133 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLD 133 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555555555555555555444444433333333333
No 32
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=63.08 E-value=39 Score=29.41 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=40.2
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 008831 303 LERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEK 358 (552)
Q Consensus 303 lE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~~~~~~k~~h 358 (552)
+++.-+..|...|.+||.-|.-..+.=-.+=.|-.+|+++-+-|++|+++-|...+
T Consensus 13 ~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~ 68 (80)
T PF10224_consen 13 LEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSS 68 (80)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455667777888898877655443333346788999999999999997665544
No 33
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.29 E-value=96 Score=30.75 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHH
Q 008831 33 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 82 (552)
Q Consensus 33 EkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~k 82 (552)
++-..|.+++++-++-+.++..++.+.++....+|.+...++.+++...+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555556666666666666666666666666666666554
No 34
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.14 E-value=1e+02 Score=28.06 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=50.4
Q ss_pred hHHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHH
Q 008831 12 GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQ-------TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 84 (552)
Q Consensus 12 s~VA~AFAERD~slmEaEKAKEkEE~m~qkf~~f~-------~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI 84 (552)
++|=.+|..|+..+.+.+.+...-...-+++..++ .|+.++++++.+.++.-..+..++... ++..+.=+
T Consensus 103 ~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El 179 (218)
T cd07596 103 QAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEEL 179 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45667899999999999988877777766665554 355555555555444333333333333 33334555
Q ss_pred HHHHHHhhhhhhhh
Q 008831 85 NKFYEIRQQSLEVL 98 (552)
Q Consensus 85 ~KFyeiR~~~~e~~ 98 (552)
..|..-|..+..+.
T Consensus 180 ~~f~~~~~~dlk~~ 193 (218)
T cd07596 180 KRFHEERARDLKAA 193 (218)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666665555443
No 35
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.58 E-value=1.6e+02 Score=28.34 Aligned_cols=17 Identities=12% Similarity=0.346 Sum_probs=9.2
Q ss_pred hhHHHHHHhhhcchhHH
Q 008831 11 QGCMAAAFAERDNSVME 27 (552)
Q Consensus 11 Qs~VA~AFAERD~slmE 27 (552)
..|+..-+.++...|..
T Consensus 15 ~~C~~~~L~~~~~~l~~ 31 (302)
T PF10186_consen 15 ANCVNNRLLELRSELQQ 31 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666655555555444
No 36
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.53 E-value=2.2e+02 Score=29.62 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHH
Q 008831 130 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKF 176 (552)
Q Consensus 130 ALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~ 176 (552)
.+++|.+++.++++..++.| ..|+|-.|+.|-|
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L--------------~~L~ktNv~n~~F 142 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQL--------------DRLRKTNVYNDTF 142 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HCHHT--TTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHhcCchhcee
Confidence 45667777777776655543 3455566655554
No 37
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.94 E-value=77 Score=26.35 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=26.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 119 FNDTSTSKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 119 fn~tStskyIsALEeEle~lrasi~~LQskLRv 151 (552)
|=-.+...++..|++..+.+...+++|..++.-
T Consensus 55 fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~ 87 (106)
T PF01920_consen 55 FVKQDKEEAIEELEERIEKLEKEIKKLEKQLKY 87 (106)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567889999999999999999998887653
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=58.13 E-value=2e+02 Score=28.57 Aligned_cols=109 Identities=13% Similarity=0.216 Sum_probs=49.2
Q ss_pred cccccccccCCcchHHHHHHHHHHHHHH------------HHhHHHHHhhhhhh------HHHHH-HhHHhHHHHHHhhh
Q 008831 111 LDSAEMWSFNDTSTSKYISALEDELEKT------------RSSVENLQSKLRMG------LEIEN-HLKKSVRELEKKII 171 (552)
Q Consensus 111 ~DS~e~WSfn~tStskyIsALEeEle~l------------rasi~~LQskLRvG------LEIEn-HLkk~vr~LEKkqi 171 (552)
..+.+++.|-.+-.+..+..+-.+.+.. ..++..++...... +--|. .+++.+..|+.+..
T Consensus 154 ~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~ 233 (312)
T PF00038_consen 154 SVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELE 233 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhh
Confidence 3444556555555555555554444322 33444444433331 11111 24444444444432
Q ss_pred ---hhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhc
Q 008831 172 ---HSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQH 219 (552)
Q Consensus 172 ---~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~ 219 (552)
--.....+.|.++.+.|...+...-..+..=...|..+-..++..+.+
T Consensus 234 ~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 234 SLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 223566788888888888877766655555555555555555544433
No 39
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.09 E-value=5.5e+02 Score=33.62 Aligned_cols=251 Identities=24% Similarity=0.272 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccccc
Q 008831 39 SQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWS 118 (552)
Q Consensus 39 ~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WS 118 (552)
..+......+++|+.-++....+.|..|+.++..++.+..-.-+.+.
T Consensus 1469 ~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~--------------------------------- 1515 (1930)
T KOG0161|consen 1469 STELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVH--------------------------------- 1515 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 33444445555555555666666666666666666665554444331
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh---------------hHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHH
Q 008831 119 FNDTSTSKYISALEDELEKTRSSVENLQSKLRM---------------GLEIENHLKKSVRELEKKIIHSDKFISNAIAE 183 (552)
Q Consensus 119 fn~tStskyIsALEeEle~lrasi~~LQskLRv---------------GLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~ 183 (552)
...+-..+||.+++-|++.++-+...|++ =.+|+--|.-+....|..---....|.+=.+.
T Consensus 1516 ----elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~ 1591 (1930)
T KOG0161|consen 1516 ----ELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAE 1591 (1930)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 12234455555555555555555544443 13444445555555554444444444443333
Q ss_pred HHHhhhhhHHHHHHh-------hhhcchhhhhHHHHHHHhhhcccccccccccCCCccccccccccccceeeccCCCCcc
Q 008831 184 LRLCHSQLRVHVVNS-------LEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNL 256 (552)
Q Consensus 184 Lq~~h~~~R~~Im~l-------L~ee~s~iks~v~~ieekl~~~~d~~~e~n~~P~q~e~~~~e~ecrDVHvs~d~~p~~ 256 (552)
|- --...|..+..+ +++=..+++.......+-+.++. -.|..++-.-.+|.|.+-..+
T Consensus 1592 Le-~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lk---------k~q~~~k~lq~~~e~~~~~~~----- 1656 (1930)
T KOG0161|consen 1592 LE-AETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLK---------KLQAQLKELQRELEDAQRARE----- 1656 (1930)
T ss_pred hh-HHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHH-----
Confidence 32 334445555555 44445555555555555555553 112222222223333333222
Q ss_pred ccCCCCCccchhhhcccCCchHHHHHHHHHHHHHHHhhchHHHHHHHHH----------------------hhhHHHHHH
Q 008831 257 VSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLER----------------------NVNSALQKK 314 (552)
Q Consensus 257 ~~k~~~ps~~~~~~d~~~d~S~alAQALqEKv~ALlLlSQqeER~llE~----------------------~~n~~Lq~~ 314 (552)
++-.-.+ .++....+-.+=-.-|..+.+++.-==.+=|+-+.|- ...+.||..
T Consensus 1657 ----e~~~q~~-~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~e 1731 (1930)
T KOG0161|consen 1657 ----ELLEQLA-EAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSE 1731 (1930)
T ss_pred ----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence 1111111 1222222222222334444444444444444433331 123345555
Q ss_pred HHHHHHhhhhhchHHH-HHHHHHHhHHHHHHHHH
Q 008831 315 IEELQRNLFQVTTEKV-KALMELAQLKQDYQLLQ 347 (552)
Q Consensus 315 ieeLQrNl~QVt~EKV-kaLmELAqLkqey~lL~ 347 (552)
++|-++++.= -+||+ ||.|..|++..+...=+
T Consensus 1732 lee~~~~~~~-~~Er~kka~~~a~~~~~el~~Eq 1764 (1930)
T KOG0161|consen 1732 LEEEQSELRA-AEERAKKAQADAAKLAEELRKEQ 1764 (1930)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHhHHHHHHHH
Confidence 5666665554 56777 58999999988876544
No 40
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=57.81 E-value=1.9e+02 Score=28.20 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008831 17 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 58 (552)
Q Consensus 17 AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~ 58 (552)
+.|.|=+.+++ .|-+++.++|..+-..+.++...+.+
T Consensus 19 ~~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 55 (209)
T TIGR00309 19 KMAKRGYSLLK-----LKRDALIMEFRQILERAKDIKNKMEQ 55 (209)
T ss_pred HHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888887 88899999999888888887766553
No 41
>PRK03918 chromosome segregation protein; Provisional
Probab=57.17 E-value=3.4e+02 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhh
Q 008831 127 YISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskL 149 (552)
.+..++++++.+...+..++..+
T Consensus 315 ~~~~l~~~~~~l~~~l~~~e~~~ 337 (880)
T PRK03918 315 RLSRLEEEINGIEERIKELEEKE 337 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333
No 42
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=56.85 E-value=2e+02 Score=30.61 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 008831 35 EELMSQKFNEFQTRLEELSSENIELKKQNATLRFD 69 (552)
Q Consensus 35 EE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~d 69 (552)
+..+-.+++.|.+|+.++..-+....++..-+...
T Consensus 219 ~~~vf~~~~~f~~Rl~~i~~i~~~~~~f~~l~~~~ 253 (579)
T PF08385_consen 219 EKKVFGRLDAFKERLEDIKEIRETHEQFSRLLKSE 253 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35777889999999999988888888887766666
No 43
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=56.12 E-value=1.4e+02 Score=30.46 Aligned_cols=114 Identities=21% Similarity=0.254 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhcc--chhhhhchhccccccccc--
Q 008831 43 NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET--SWEDKCACLLLDSAEMWS-- 118 (552)
Q Consensus 43 ~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~--s~~eKcs~LL~DS~e~WS-- 118 (552)
+++++++.+++.++.+|+++|..|-.||+......... . .+.+ +...-.+-.+.++...-+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~-----------~----~~~~~~s~~~~~~~~~~~~~~~g~~s 66 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSAS-----------R----SFNDGASMASGATRQIPNSGRSGSLS 66 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----------c----CCCCcccccccchhhccCccccCCCC
Confidence 57889999999999999999999999999875432200 0 0000 000000000111100000
Q ss_pred -----cCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhh
Q 008831 119 -----FNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII 171 (552)
Q Consensus 119 -----fn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi 171 (552)
.+++.-+..+.-+-.+-|..|.....|...+|--..--+.|+..+..|.+-++
T Consensus 67 p~ss~~~~~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 67 PTSSIIGGGGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122334444555566777777777777776665555556666666666665
No 44
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.62 E-value=1.4e+02 Score=25.91 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=16.2
Q ss_pred CcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 121 DTSTSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 121 ~tStskyIsALEeEle~lrasi~~LQskL 149 (552)
..+....+..|++.++.+...++.|..++
T Consensus 58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~ 86 (105)
T cd00632 58 KQEKEEARTELKERLETIELRIKRLERQE 86 (105)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666655555555544
No 45
>PRK09039 hypothetical protein; Validated
Probab=53.82 E-value=2.9e+02 Score=29.09 Aligned_cols=39 Identities=8% Similarity=0.013 Sum_probs=23.7
Q ss_pred HHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhcc
Q 008831 182 AELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHC 220 (552)
Q Consensus 182 s~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~~ 220 (552)
.+.+..-...+..|-+.|.+...-|...-..|-.+|+++
T Consensus 168 ~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~ 206 (343)
T PRK09039 168 RESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREI 206 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555555566666777666666666666666666544
No 46
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=53.72 E-value=3.2e+02 Score=30.48 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=72.7
Q ss_pred chhhhhchhccccccc-cccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh----hHHHHHHhHHhHHHHHHhhhhhHH
Q 008831 101 SWEDKCACLLLDSAEM-WSFNDTSTSKYISALEDELEKTRSSVENLQSKLRM----GLEIENHLKKSVRELEKKIIHSDK 175 (552)
Q Consensus 101 s~~eKcs~LL~DS~e~-WSfn~tStskyIsALEeEle~lrasi~~LQskLRv----GLEIEnHLkk~vr~LEKkqi~~dk 175 (552)
+.++||..|=.+|..- .+-+++-.-.-++++|.=.+-.++-++.-|+..-- +-.+++-|-.-++.|..+....+.
T Consensus 195 ~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ve~ 274 (421)
T KOG2685|consen 195 EIDEKCLALNNNSPNISYKPDPTRVPPNSSSPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADAVEL 274 (421)
T ss_pred eechhhhhhcCCCCCeeccCCCccCCCCCCCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999998887654 22222211222233555555555555555554332 455677788889999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhhcc
Q 008831 176 FISNAIAELRLCHSQLRVHVVNSLEEGR 203 (552)
Q Consensus 176 ~i~Ngis~Lq~~h~~~R~~Im~lL~ee~ 203 (552)
-+.++|++.+.-....-.+.-+.|+|=.
T Consensus 275 af~~ri~etqdar~kL~~ql~k~leEi~ 302 (421)
T KOG2685|consen 275 AFKKRIRETQDARNKLEWQLAKTLEEIA 302 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888888743
No 47
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=53.70 E-value=3.4e+02 Score=31.66 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMG 152 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvG 152 (552)
+..-|-.||.|.+.|+.++.+--+..+.|
T Consensus 247 aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 56788999999999999998887777776
No 48
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.75 E-value=1.1e+02 Score=25.88 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=39.2
Q ss_pred HHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhH---HHHHHHHHHHHHhhhhhHHHHHHhhh
Q 008831 142 VENLQSKLRMGLEIENHLKKSVRELEKKIIHSD---KFISNAIAELRLCHSQLRVHVVNSLE 200 (552)
Q Consensus 142 i~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~d---k~i~Ngis~Lq~~h~~~R~~Im~lL~ 200 (552)
++.|+.|+...++--..|+..+..|..+..-+. .-++.-...|++.|.....+|-+||.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666776777777777777877777654322 23344556677778888888777775
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=52.57 E-value=4.1e+02 Score=30.40 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHH
Q 008831 312 QKKIEELQRNLFQVTTEKVKALMEL 336 (552)
Q Consensus 312 q~~ieeLQrNl~QVt~EKVkaLmEL 336 (552)
+..|+++.+...++-.++-.+++.+
T Consensus 1013 ~~~i~~i~~~~~~~f~~~~~~F~~v 1037 (1179)
T TIGR02168 1013 TEAKETLEEAIEEIDREARERFKDT 1037 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 50
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.60 E-value=1.8e+02 Score=27.16 Aligned_cols=88 Identities=24% Similarity=0.412 Sum_probs=63.0
Q ss_pred ccccCC------cchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh---hhhHHHHHHHHHHHHH
Q 008831 116 MWSFND------TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI---IHSDKFISNAIAELRL 186 (552)
Q Consensus 116 ~WSfn~------tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkq---i~~dk~i~Ngis~Lq~ 186 (552)
-|||.| .|.++.++++-.+|+.|-.+|..- -.||..|+..|..++ .-..+.|.+.+++++.
T Consensus 27 Gws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~t----------KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 27 GWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSST----------KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 378873 457777777777777776666543 357777777777765 4667788899999988
Q ss_pred hhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhccc
Q 008831 187 CHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCD 221 (552)
Q Consensus 187 ~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~~~ 221 (552)
.=++-+..|- .+..+|-.++.||.++.
T Consensus 97 dv~~i~~dv~--------~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 97 DVSQIGDDVD--------SVQQMVEGLEGKIDEIE 123 (126)
T ss_pred hHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence 8887777664 45677888888886663
No 51
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=50.94 E-value=28 Score=31.95 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=29.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008831 28 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 61 (552)
Q Consensus 28 aEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~ 61 (552)
+.|.+.||+..-+.+.+++.++++++..+.+|++
T Consensus 100 ~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 100 ARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788899999999999999999999888864
No 52
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.88 E-value=1e+02 Score=32.75 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhh
Q 008831 127 YISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskL 149 (552)
-|.-||.+|.+.+.+|++|.+.|
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777776665544
No 53
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=50.38 E-value=53 Score=29.46 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=6.3
Q ss_pred hhhhhhhhhhhHHHHHHhhhcchhHHH
Q 008831 2 EAEKQVKFFQGCMAAAFAERDNSVMEA 28 (552)
Q Consensus 2 e~EKQVkFFQs~VA~AFAERD~slmEa 28 (552)
++|+|+|.|+. .|.-++..|..||+.
T Consensus 30 eLe~q~k~F~~-qA~~V~~wDr~Lv~n 55 (116)
T PF05064_consen 30 ELEEQEKEFNE-QATQVNAWDRQLVEN 55 (116)
T ss_dssp --------------------TCHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 78999999985 688899999999994
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.51 E-value=6.8e+02 Score=31.83 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhhhHH
Q 008831 176 FISNAIAELRLCHSQLRV 193 (552)
Q Consensus 176 ~i~Ngis~Lq~~h~~~R~ 193 (552)
-+++++++|+..|-++|.
T Consensus 517 ~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 517 QLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366777777776555543
No 55
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.72 E-value=70 Score=25.44 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhH
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 77 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~ 77 (552)
.+.+++.++..+++.+...+..+..|+..+..+..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455666666666665555555555555555554443
No 56
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.21 E-value=6.6e+02 Score=31.28 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhH
Q 008831 126 KYISALEDELEKTRSSVENLQSKLRMGL 153 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLRvGL 153 (552)
+-|+.|+.|++.+++++++.+..+.-.+
T Consensus 843 ~~~~~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 843 KQISSLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 4567777777777777777776655443
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.05 E-value=1.9e+02 Score=28.66 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 128 ISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 128 IsALEeEle~lrasi~~LQskLRv 151 (552)
|+.|++|+..|+.++..+|++++.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555888888888888888888765
No 58
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=46.88 E-value=2.8e+02 Score=26.96 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=35.0
Q ss_pred hhhhhhhhhhhHHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHH
Q 008831 2 EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQ 46 (552)
Q Consensus 2 e~EKQVkFFQs~VA~AFAERD~slmEaEKAKEkEE~m~qkf~~f~ 46 (552)
+.++..|-+++-+.-+...+...+-.++|+|.+=+..-+++..+.
T Consensus 97 ~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~ 141 (236)
T cd07651 97 SYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYT 141 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356777888888888899999999999999988776666655443
No 59
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=46.14 E-value=69 Score=29.61 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 008831 275 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 324 (552)
Q Consensus 275 d~S~alAQALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~Q 324 (552)
++=..++.-||+++..| ++|||=+|..++.- ...|++|...+..
T Consensus 46 ~eL~~~~k~lh~ri~~l-----eeEryd~E~kv~k~-~~Ei~elk~kv~d 89 (132)
T PF00992_consen 46 AELQELCKELHERIDKL-----EEERYDLEEKVAKQ-DYEIEELKKKVND 89 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh-cccHHHHHhHHHH
Confidence 56677899999999987 89999999999887 3458999887755
No 60
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=45.53 E-value=1.3e+02 Score=34.10 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHH
Q 008831 47 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSK 126 (552)
Q Consensus 47 ~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStsk 126 (552)
+++..|+..+....+-+..|+.++..++.+.+.. .+|+ .-+...-||=.|=+.|.-.|-+.- ..
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~--------~L~g-----~~~~~~trVL~lr~NP~~~~~~~k---~~ 566 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKL--------TLQG-----EFNPSKTRVLHLRDNPTSKAEQIK---KS 566 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCT-------BTTTEEEEEESS-HHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcc-----ccCCCCceeeeeCCCcHHHHHHHH---HH
Confidence 4444454455555555555555555555544410 0111 112344466666666666655543 24
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh--------hHHHH----HHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 008831 127 YISALEDELEKTRSSVENLQSKLRM--------GLEIE----NHLKKSVRELEKKIIHSDKFISNAIAEL 184 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskLRv--------GLEIE----nHLkk~vr~LEKkqi~~dk~i~Ngis~L 184 (552)
-+.+|..|++.|++.+..|...-.. ++..- +-|++.+..+||+.--+-.++...+.++
T Consensus 567 ~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eF 636 (722)
T PF05557_consen 567 TLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEF 636 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777666432211 12222 2367777777777766666666666554
No 61
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=44.86 E-value=1.7e+02 Score=31.01 Aligned_cols=64 Identities=30% Similarity=0.508 Sum_probs=42.4
Q ss_pred chhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 008831 101 SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 177 (552)
Q Consensus 101 s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i 177 (552)
+|.++|-+++-.- | ..+|++.|+++++.+.+.+++|..+|.-.= +.+++.+.++++...+++=|
T Consensus 226 ~f~d~a~~~~A~l------~---~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~ 289 (406)
T PF02388_consen 226 AFGDKAKFFLAEL------N---GKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRI 289 (406)
T ss_dssp HCCCCEEEEEEEE------C---CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEE------c---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHH
Confidence 6666655444322 2 349999999999999999999998864432 55555555655555544433
No 62
>PRK02224 chromosome segregation protein; Provisional
Probab=44.05 E-value=5.5e+02 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhh
Q 008831 127 YISALEDELEKTRSSVENLQSKLRMG 152 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskLRvG 152 (552)
.++.|+.+++.++..++.+.+.+...
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~ 508 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAE 508 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554443
No 63
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=43.85 E-value=73 Score=25.96 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=32.9
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 008831 162 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSL 199 (552)
Q Consensus 162 ~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL 199 (552)
.+.+|+++.+.+|..|.--|.+|+..|..-|.=|..-+
T Consensus 9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 46789999999999999999999999999998876544
No 64
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.59 E-value=5e+02 Score=28.90 Aligned_cols=80 Identities=19% Similarity=0.372 Sum_probs=37.7
Q ss_pred hHHHHHHhHHhHHHHHHHHHHHhhhhhhhhcc----------------chhhhhchhccccccccccCCcchHHHHHHHH
Q 008831 69 DLEKQEELNESFKEVINKFYEIRQQSLEVLET----------------SWEDKCACLLLDSAEMWSFNDTSTSKYISALE 132 (552)
Q Consensus 69 dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~----------------s~~eKcs~LL~DS~e~WSfn~tStskyIsALE 132 (552)
++....+.++...+-|+.+|++=.+...+... .-.+.|..-++.-..+..+|+.-+ .-+.+++
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~-~~~~~le 354 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL-ESVRQLE 354 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhH-HHHHHHH
Confidence 45555566666666666666654443333211 112233444444444555553321 2344555
Q ss_pred HHHHHHHHhHHHHHhhh
Q 008831 133 DELEKTRSSVENLQSKL 149 (552)
Q Consensus 133 eEle~lrasi~~LQskL 149 (552)
++++.+.+.+..++..+
T Consensus 355 keL~~Le~~~~~~~~~i 371 (569)
T PRK04778 355 KQLESLEKQYDEITERI 371 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555444433
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=43.24 E-value=1.1e+02 Score=34.74 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHH--Hh-------hhh------hchHHHHHHHHHHhHHHHHHHH
Q 008831 282 QALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQ--RN-------LFQ------VTTEKVKALMELAQLKQDYQLL 346 (552)
Q Consensus 282 QALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQ--rN-------l~Q------Vt~EKVkaLmELAqLkqey~lL 346 (552)
..|+.++..| +.|.-.|+. .+..|+.+++-++ -. +++ ...+.+| .-+|..|+.|+..|
T Consensus 506 ~~L~~~~~~L-----e~e~~~L~~-~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k-~~~l~~L~~En~~L 578 (722)
T PF05557_consen 506 NELQKEIEEL-----ERENERLRQ-ELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIK-KSTLEALQAENEDL 578 (722)
T ss_dssp HHHHHHHHHH-----HHHHHHHHH-HHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHH-HHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3477787766 444444444 3445555555421 11 111 2234455 57899999999999
Q ss_pred HHHh
Q 008831 347 QEKI 350 (552)
Q Consensus 347 ~e~~ 350 (552)
..+.
T Consensus 579 ~~~l 582 (722)
T PF05557_consen 579 LARL 582 (722)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9766
No 66
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=43.11 E-value=3.4e+02 Score=26.77 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhH-HHHHHHHHHHhhhhhhhhccchhhhhc
Q 008831 29 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF-KEVINKFYEIRQQSLEVLETSWEDKCA 107 (552)
Q Consensus 29 EKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~-~kVI~KFyeiR~~~~e~~~~s~~eKcs 107 (552)
.+.|+....+++=+.+|+.++.++...+.+-- +.+-..+...+++-.-. +.+|..+|+=.|....-....|+++
T Consensus 60 ~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~---~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~-- 134 (215)
T PF07083_consen 60 DKRKEIKKEYSKPIKEFEAKIKELIAPIDEAS---DKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYGVDPEPFERI-- 134 (215)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHhhh--
Confidence 45678888999999999999999987765443 44444444444433322 3355656655554443222245544
Q ss_pred hhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHH
Q 008831 108 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQ 146 (552)
Q Consensus 108 ~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQ 146 (552)
-...|.=.+.|..+-+..++..+..+...+.-+-
T Consensus 135 -----~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~ 168 (215)
T PF07083_consen 135 -----IKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIK 168 (215)
T ss_pred -----cchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778887877776666655554444433
No 67
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=42.60 E-value=86 Score=27.15 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHH--HHhhhhhhhhcc---chhhhhchhcccc
Q 008831 49 LEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFY--EIRQQSLEVLET---SWEDKCACLLLDS 113 (552)
Q Consensus 49 ~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFy--eiR~~~~e~~~~---s~~eKcs~LL~DS 113 (552)
+.|.++-..+..++...|+..+...++.-..+.+. .+|| .--..+.+...+ ..+-+|+||=-|.
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L-~~YY~s~~w~~d~e~~e~g~~~~~~~~gVLSEDa 70 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKL-RDYYGSEEWMEDYEASEQGDLPTDGKCGVLSEDA 70 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCcHhHHHHHHHHhCCCCCCCcccCccCchH
Confidence 33344444444444555555555555554444443 3466 111222223322 3467899985554
No 68
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=41.16 E-value=6.1e+02 Score=29.16 Aligned_cols=126 Identities=22% Similarity=0.256 Sum_probs=67.1
Q ss_pred HHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHH
Q 008831 54 SENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 133 (552)
Q Consensus 54 S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEe 133 (552)
..+++..+--..++.++.++.++++.+.+-..|=..-|....+-..+ |...-+-|- ++ ..-+-.-|..||+
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~-~~~~l~~le---Ae-----~~~~krr~~~le~ 169 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDD-YLSRLSELE---AE-----INTLKRRIKALED 169 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH-Hhhhhhhhh---hH-----HHHHHHHHHHHHH
Confidence 34444444455677788888888877776665555555444443332 111111000 00 0013356899999
Q ss_pred HHHHHHHhHHHHHhhhhh---hHHH----HHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 008831 134 ELEKTRSSVENLQSKLRM---GLEI----ENHLKKSVRELEKKIIHSDKFISNAIAELRLCH 188 (552)
Q Consensus 134 Ele~lrasi~~LQskLRv---GLEI----EnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h 188 (552)
|+..|+...+.|..-|-- -|+= .+-++-++..|-++...++..-.--|-+++++|
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999888888776532 1211 122344555555555555544444444444443
No 69
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.07 E-value=7.7e+02 Score=30.30 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=6.6
Q ss_pred ccccccccccC
Q 008831 110 LLDSAEMWSFN 120 (552)
Q Consensus 110 L~DS~e~WSfn 120 (552)
+.+|.+.|.-.
T Consensus 296 l~~s~eEL~~l 306 (1311)
T TIGR00606 296 FQGTDEQLNDL 306 (1311)
T ss_pred CCCCHHHHHHH
Confidence 66666666533
No 70
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=39.18 E-value=4.1e+02 Score=26.63 Aligned_cols=100 Identities=13% Similarity=0.225 Sum_probs=65.3
Q ss_pred HHhhhhhhhhccchhhhhchhccccccccccCCcch--HHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHH
Q 008831 89 EIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST--SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVREL 166 (552)
Q Consensus 89 eiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tSt--skyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~L 166 (552)
|+|.....|.-...-+--+++-.=+...|..++..+ |.||+.|=++.......++.+=...++--++.+.|=..+=.
T Consensus 53 dLr~~iy~~~a~~~l~~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~- 131 (234)
T PF10474_consen 53 DLREPIYKCVASRLLDLEQILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIF- 131 (234)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Confidence 566665555433111111333333556799996665 99999999999999999988776666666666655332211
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhHHH
Q 008831 167 EKKIIHSDKFISNAIAELRLCHSQLRVH 194 (552)
Q Consensus 167 EKkqi~~dk~i~Ngis~Lq~~h~~~R~~ 194 (552)
..-..++.|.+.++++-..-|+-
T Consensus 132 -----~~~~~Lveg~s~vkKCs~eGRal 154 (234)
T PF10474_consen 132 -----FAFETLVEGYSRVKKCSNEGRAL 154 (234)
T ss_pred -----HHHHHHHHHHHhccCCChhhHHH
Confidence 34455678888888888777763
No 71
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=39.01 E-value=6.9e+02 Score=29.16 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhHH--HHHHhHHhHHHHHHhhh
Q 008831 126 KYISALEDELEKTRSSVENLQSKLRMGLE--IENHLKKSVRELEKKII 171 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLRvGLE--IEnHLkk~vr~LEKkqi 171 (552)
..+..++...|.|..++.+||...-.|+- +.--|-+++...+|+..
T Consensus 276 ~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~ 323 (683)
T PF08580_consen 276 NLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKS 323 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHh
Confidence 34555666666666666677766644432 22335666666666553
No 72
>PTZ00046 rifin; Provisional
Probab=38.91 E-value=1.9e+02 Score=31.38 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHhhhHHH
Q 008831 35 EELMSQKFNEFQTRLEELSSENIELKK-------QNATLRFDLEK 72 (552)
Q Consensus 35 EE~m~qkf~~f~~R~eE~~S~~~~qK~-------lN~aLQ~dl~~ 72 (552)
..--+|.|.|..+||.+....|+||-. |+|+|.-+|+.
T Consensus 65 ~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~e 109 (358)
T PTZ00046 65 DRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELME 109 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Confidence 445689999999999999999988742 45555554443
No 73
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.51 E-value=2.4e+02 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskL 149 (552)
..+.+..|+.+++.+..+++.++..+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~ 93 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKL 93 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555543
No 74
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=38.39 E-value=2.8e+02 Score=26.47 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=29.8
Q ss_pred HHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008831 17 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIEL 59 (552)
Q Consensus 17 AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~q 59 (552)
++|+|=+.|++ .|-+++.++|.++-..+.++...+.+.
T Consensus 11 ~~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~~ 48 (196)
T PF01813_consen 11 KLAKRGHKLLK-----KKRDALIREFRKLIKEAEELREELEEL 48 (196)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888988 888899998888888888776654443
No 75
>PRK11637 AmiB activator; Provisional
Probab=38.26 E-value=5.2e+02 Score=27.48 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcc
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 203 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~ 203 (552)
-.+||..+......|.+....|+..+.-=-....-++.....|+..+.-.+. -+..|......+...|-. |+...
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~----~l~~L~~~~~~~~~~l~~-l~~~~ 242 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKK----TLTGLESSLQKDQQQLSE-LRANE 242 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4466766666666665555555444332111111122222223222222111 244455544444445433 34445
Q ss_pred hhhhhHHHHHHH
Q 008831 204 SHIKSISDVIEE 215 (552)
Q Consensus 204 s~iks~v~~iee 215 (552)
+.|...+..++.
T Consensus 243 ~~L~~~I~~l~~ 254 (428)
T PRK11637 243 SRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 76
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.15 E-value=2.8e+02 Score=24.37 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 125 SKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 125 skyIsALEeEle~lrasi~~LQskLR 150 (552)
..-|.+|++..+.++.++.++|++||
T Consensus 80 e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655
No 77
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=37.89 E-value=1.7e+02 Score=26.91 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhh
Q 008831 36 ELMSQKFNEFQTRLEELSSENIELK-KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSL 95 (552)
Q Consensus 36 E~m~qkf~~f~~R~eE~~S~~~~qK-~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~ 95 (552)
...++++.+++..+.++.+.+.++- +++..++...+.+..+.+-+...|.-|++-....+
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~ 66 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDEL 66 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhc
Confidence 4568899999999999999988775 78888999999999999999999999988766444
No 78
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.74 E-value=2.2e+02 Score=30.03 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=54.5
Q ss_pred hhhhhHHHHHHh--hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHH
Q 008831 8 KFFQGCMAAAFA--ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 85 (552)
Q Consensus 8 kFFQs~VA~AFA--ERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~ 85 (552)
||=.--|..|=- |+-+=+-+++--|-+=+.|-..+++++.-.+|-..++..||+..+.|+.++..++++..--...|.
T Consensus 92 kyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 92 KYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444544433 333334466666666666666677777777788888999999999999999999999875555554
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.64 E-value=6.4e+02 Score=28.39 Aligned_cols=43 Identities=33% Similarity=0.569 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhh-hHHHHH---HhHHhHHHHHHhh
Q 008831 128 ISALEDELEKTRSSVENLQSKLRM-GLEIEN---HLKKSVRELEKKI 170 (552)
Q Consensus 128 IsALEeEle~lrasi~~LQskLRv-GLEIEn---HLkk~vr~LEKkq 170 (552)
+++++.+++.+.+.++.|+.++|- |=.+.+ .|.++...++.+.
T Consensus 232 i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~ 278 (650)
T TIGR03185 232 IAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAAR 278 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666665554 322322 5666666666554
No 80
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=37.53 E-value=1.3e+02 Score=33.97 Aligned_cols=69 Identities=32% Similarity=0.524 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhchHHH--HHHHHHh----hhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 008831 283 ALQEKVAALLLLSQQEE--RHLLERN----VNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKE 356 (552)
Q Consensus 283 ALqEKv~ALlLlSQqeE--R~llE~~----~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~~~~~~k~ 356 (552)
-|.+||+.|. |+ |-+||+| .++-||.....-|+-|--..+||=-.-|||-++|-.|-.|+|+-...+-+
T Consensus 366 kLk~niEeLI-----edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq 440 (527)
T PF15066_consen 366 KLKENIEELI-----EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ 440 (527)
T ss_pred HHHHHHHHHH-----HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4556666654 34 3467774 67888888999999999999999999999999999999999976555533
No 81
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=36.75 E-value=3.6e+02 Score=25.53 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhh-----------HHHHH-HhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 008831 126 KYISALEDELEKTRSSVENLQSKLRMG-----------LEIEN-HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 193 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLRvG-----------LEIEn-HLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~ 193 (552)
.-++.|..+.+.|+..+++|.++||-- +..+. ..+...+.++.+..-.+.=|...|++|+-.--..|.
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666665542 21111 123333344444444444455666677766666666
Q ss_pred HHHHhh
Q 008831 194 HVVNSL 199 (552)
Q Consensus 194 ~Im~lL 199 (552)
.+++.+
T Consensus 153 ~~lr~~ 158 (177)
T PF07798_consen 153 DTLRWL 158 (177)
T ss_pred HHHHHH
Confidence 666543
No 82
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.74 E-value=4.1e+02 Score=25.59 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhcc--chhhhhchhccccccccc
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET--SWEDKCACLLLDSAEMWS 118 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~--s~~eKcs~LL~DS~e~WS 118 (552)
.|.++...+.+++..+....+.+..|-.....+-.-+.-|.++++.+=.+=..-..++.. .-.++|+.++.+-.+.|.
T Consensus 15 eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~ 94 (200)
T cd07624 15 EFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDHE 94 (200)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777788888888887788888888777777777777888888765433322222333 566899999999999987
Q ss_pred cC
Q 008831 119 FN 120 (552)
Q Consensus 119 fn 120 (552)
++
T Consensus 95 ~~ 96 (200)
T cd07624 95 FV 96 (200)
T ss_pred HH
Confidence 65
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.52 E-value=6.1e+02 Score=27.19 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHh
Q 008831 127 YISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNS 198 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~l 198 (552)
-|..|+.+++.++..++.++...+ + -+.+++++..++++..... ..|..+.......+.+|-++
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~---~-~~~~~~~i~el~~~i~~~~----~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMD---E-FNEQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555544 1 2223444444444433222 22344444444445555444
No 84
>smart00338 BRLZ basic region leucin zipper.
Probab=34.41 E-value=1.3e+02 Score=23.94 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 76 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq 76 (552)
.+.+++.++..|++.+.+.......|+.++..++.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666555555555555555555444444
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.12 E-value=9.7e+02 Score=29.47 Aligned_cols=106 Identities=12% Similarity=0.241 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHH--hhhhhhhhccchhhhhchhccccccccc
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEI--RQQSLEVLETSWEDKCACLLLDSAEMWS 118 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyei--R~~~~e~~~~s~~eKcs~LL~DS~e~WS 118 (552)
..+.+.+++.+.++.+......-+.|+.++..+..+-+...+.=-+.=++ +...+...-..+.++-.-++. .|.
T Consensus 495 ~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~----~~~ 570 (1311)
T TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG----YFP 570 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCC
Confidence 45667777777777777777777777777777776666555532222222 222222222233333333443 332
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 119 FNDTSTSKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 119 fn~tStskyIsALEeEle~lrasi~~LQskLRv 151 (552)
-+ +....++.++..++..++..++.++.++--
T Consensus 571 ~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~ 602 (1311)
T TIGR00606 571 NK-KQLEDWLHSKSKEINQTRDRLAKLNKELAS 602 (1311)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 556788888888888888888888877743
No 86
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.67 E-value=4.7e+02 Score=25.71 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=41.6
Q ss_pred hhhhhhhHHHHHHhhhcchhHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Q 008831 6 QVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQK----------FNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 75 (552)
Q Consensus 6 QVkFFQs~VA~AFAERD~slmEaEKAKEkEE~m~qk----------f~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~e 75 (552)
.|+|.|+-+-....=+|.+.-=.+..|..|+.+.++ +.+++..+.|++-.....+..+.+-..++..++.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999998888887665555666666665544 4444444444444433333334444444444443
Q ss_pred h
Q 008831 76 L 76 (552)
Q Consensus 76 q 76 (552)
.
T Consensus 167 ~ 167 (190)
T PF05266_consen 167 E 167 (190)
T ss_pred H
Confidence 3
No 87
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=33.52 E-value=88 Score=31.81 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
-+.++=.-|-.|..||+.++..+++....||.++..++.-|-
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566789999999999999999999999999999999987
No 88
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.45 E-value=1.1e+02 Score=24.23 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 008831 314 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 348 (552)
Q Consensus 314 ~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e 348 (552)
.|++|+..+...+.+-...-.++..|++++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999988888888888999999999999873
No 89
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.15 E-value=1.1e+03 Score=29.89 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhcc
Q 008831 38 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET 100 (552)
Q Consensus 38 m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~ 100 (552)
.-+.+++-++++.+......+.++++..++.++...+.-+.....-..|--..|..-...-+|
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d 554 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELD 554 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 335677788888888888888899999999999888877776665566666677665555555
No 90
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=33.10 E-value=35 Score=28.66 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHh
Q 008831 130 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 162 (552)
Q Consensus 130 ALEeEle~lrasi~~LQskLRvGLEIEnHLkk~ 162 (552)
|.-||+|.||.+|..|+.+.+ -||.||.+.|.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~-~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNS-QLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 456899999999999998876 48999987654
No 91
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.62 E-value=79 Score=28.02 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhh-----hHHHHHHhHHh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRM-----GLEIENHLKKS 162 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRv-----GLEIEnHLkk~ 162 (552)
|.+=+..|+-++..++-.++.+-.+|+- +|.+||+||+.
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~lk~~ 106 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENELKKD 106 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444555555555555555555555543 78899988763
No 92
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.26 E-value=8.5e+02 Score=28.20 Aligned_cols=157 Identities=17% Similarity=0.234 Sum_probs=76.9
Q ss_pred hhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHh
Q 008831 62 QNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSS 141 (552)
Q Consensus 62 lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lras 141 (552)
++-.+--|.+.++.||+ ..+++.-+.|.-|..-- ..++|--.|=+|+.-- ..|+.++++..++--+.
T Consensus 265 ~~~~i~~~i~~lk~~n~---~l~e~i~ea~k~s~~i~--~l~ek~r~l~~D~nk~--------~~~~~~mk~K~~~~~g~ 331 (622)
T COG5185 265 FVHIINTDIANLKTQND---NLYEKIQEAMKISQKIK--TLREKWRALKSDSNKY--------ENYVNAMKQKSQEWPGK 331 (622)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHH--------HHHHHHHHHHHHhcchH
Confidence 34445556666666666 66666666665443322 6677777777776432 23444455444444444
Q ss_pred HHHHHhhhhhhHHHHHHhHHhHHHH----HHhhhhhHHH---HHHH--HHHHHHhhhhhHHHHHHhhhhcchhhhhHHHH
Q 008831 142 VENLQSKLRMGLEIENHLKKSVREL----EKKIIHSDKF---ISNA--IAELRLCHSQLRVHVVNSLEEGRSHIKSISDV 212 (552)
Q Consensus 142 i~~LQskLRvGLEIEnHLkk~vr~L----EKkqi~~dk~---i~Ng--is~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ 212 (552)
+.+||+++---=|=-+-|+-+...| +|+-|-...| .... |+-=-.--.-+-+..|+-..+-+.-+.-+++.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s 411 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS 411 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 4444444332211111122222222 2222211111 1000 10000111223344555666667777778888
Q ss_pred HHHhhhcccccccccccCC
Q 008831 213 IEEKTQHCDDVIRGQNTGT 231 (552)
Q Consensus 213 ieekl~~~~d~~~e~n~~P 231 (552)
++.++.+++...-++-.+|
T Consensus 412 lek~~~~~~sl~~~i~~~~ 430 (622)
T COG5185 412 LEKTLRQYDSLIQNITRSR 430 (622)
T ss_pred HHHHHHHHHHHHHHhcccH
Confidence 8888888865555566666
No 93
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=32.18 E-value=2.4e+02 Score=30.60 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHhhhHH
Q 008831 35 EELMSQKFNEFQTRLEELSSENIELKK-------QNATLRFDLE 71 (552)
Q Consensus 35 EE~m~qkf~~f~~R~eE~~S~~~~qK~-------lN~aLQ~dl~ 71 (552)
..--+|.|.|..+|+.+....|+||-. |+|+|.-+|+
T Consensus 68 ~rqTsQRF~EYdERM~~kRqKcKeqCDKeIQKIILKDKiEKeL~ 111 (353)
T TIGR01477 68 DRQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILKDKLEKELT 111 (353)
T ss_pred hHHHHHHHHhHHHHHHHhhhhhHHhhchHHHHHHHHHHHHHHHH
Confidence 445689999999999999999888742 4555555443
No 94
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.10 E-value=2.3e+02 Score=26.11 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=28.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 118 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 118 Sfn~tStskyIsALEeEle~lrasi~~LQskLRv 151 (552)
.||=.+..+...+||..|.....+|+.||..++-
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~ 52 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEK 52 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565567899999999999999999999987664
No 95
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=32.09 E-value=5.2e+02 Score=25.68 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=70.6
Q ss_pred hhhhhhhhhhHHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHhhhHHHHHHhHHhHH
Q 008831 3 AEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKK-QNATLRFDLEKQEELNESFK 81 (552)
Q Consensus 3 ~EKQVkFFQs~VA~AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~-lN~aLQ~dl~~~~eq~e~~~ 81 (552)
++.++.-+|..+-.+.+-=+.---.++.-..+-+...+.+..+...+.++-+++...-. ....-..++...-++-+..+
T Consensus 57 L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL 136 (264)
T PF06008_consen 57 LEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRML 136 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHH
Confidence 45666667777766666666666666666666666666666666666666555543333 11111222333333333333
Q ss_pred HHHHHHHHHhhhhhhhhcc---chhhhhchhccccccccccCCcchHHHHHHHHHHH-------HHHHHhHHHHHhhhhh
Q 008831 82 EVINKFYEIRQQSLEVLET---SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDEL-------EKTRSSVENLQSKLRM 151 (552)
Q Consensus 82 kVI~KFyeiR~~~~e~~~~---s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEl-------e~lrasi~~LQskLRv 151 (552)
+ +||.|++..... .-...|.-||.-....+..--..+.....++.+.| .-++..+..-+.+.|-
T Consensus 137 ~------emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~e 210 (264)
T PF06008_consen 137 E------EMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTRE 210 (264)
T ss_pred H------HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344444333222 33355666665554443444222333444444444 4444444444445554
Q ss_pred h
Q 008831 152 G 152 (552)
Q Consensus 152 G 152 (552)
.
T Consensus 211 a 211 (264)
T PF06008_consen 211 A 211 (264)
T ss_pred H
Confidence 4
No 96
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=31.92 E-value=62 Score=30.50 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=29.5
Q ss_pred hhhhhhchhhHHHHHHhhHHHH----HHHHHHHHHHHH
Q 008831 420 FARMRIENATLKESLENMDHLI----SSIRRLRLSLSK 453 (552)
Q Consensus 420 ~ARmKvENAtLkEsvesmehLT----SSihRLrl~L~K 453 (552)
..-+|-||..|||++.+|+-+- .+|+.||.-|-+
T Consensus 87 I~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 87 IEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3678999999999999999997 789999987754
No 97
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.92 E-value=2.8e+02 Score=25.74 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 125 SKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 125 skyIsALEeEle~lrasi~~LQskLR 150 (552)
...|..|++|+..+.+++..|++.-.
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 47789999999999999999987443
No 98
>PHA02047 phage lambda Rz1-like protein
Probab=31.76 E-value=2.1e+02 Score=26.37 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhh
Q 008831 127 YISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHI 206 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~i 206 (552)
|.-.-.++-+.+.++++.++-++ +|+++.|..|+.+ -.++|.+|.+-|++..+|-
T Consensus 28 ~~g~~h~~a~~la~qLE~a~~r~-------~~~Q~~V~~l~~k------------------ae~~t~Ei~~aL~~n~~Wa 82 (101)
T PHA02047 28 ALGIAHEEAKRQTARLEALEVRY-------ATLQRHVQAVEAR------------------TNTQRQEVDRALDQNRPWA 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH------------------HHHHHHHHHHHHHhCCCcc
Confidence 33345667788888888776655 3789999999887 4578999999999999997
Q ss_pred hh
Q 008831 207 KS 208 (552)
Q Consensus 207 ks 208 (552)
++
T Consensus 83 D~ 84 (101)
T PHA02047 83 DR 84 (101)
T ss_pred cC
Confidence 65
No 99
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.58 E-value=1e+02 Score=31.38 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcc
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 203 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~ 203 (552)
.+.+|+.|..++|.+.+.++.|++..+=+ ++.... +.+...+..+| +-.++|...=-.|+.+|+.+.
T Consensus 127 l~~~Id~L~~QiE~~E~E~E~L~~~~kKk----k~~~~~----~~r~~~l~~~i-----erhk~Hi~kLE~lLR~L~N~~ 193 (233)
T PF04065_consen 127 LKDSIDELNRQIEQLEAEIESLSSQKKKK----KKDSTK----QERIEELESRI-----ERHKFHIEKLELLLRLLDNDE 193 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCccc----hhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999865432 111110 11111111111 123455555566788899998
Q ss_pred hhhhhHHHHHHHhhhcc
Q 008831 204 SHIKSISDVIEEKTQHC 220 (552)
Q Consensus 204 s~iks~v~~ieekl~~~ 220 (552)
..-..| +.|.+-|.-.
T Consensus 194 l~~e~V-~~ikedieyY 209 (233)
T PF04065_consen 194 LDPEQV-EDIKEDIEYY 209 (233)
T ss_pred CCHHHH-HHHHHHHHHH
Confidence 766444 4577777555
No 100
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.35 E-value=1.4e+02 Score=33.42 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=39.0
Q ss_pred hhHHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHH
Q 008831 11 QGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 84 (552)
Q Consensus 11 Qs~VA~AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI 84 (552)
=|-|-+.|.++++ +-+-+++-.+.++++++++.++.++....+.+..+|..+.++++.+..+..=+
T Consensus 55 ~~vV~~~FddkVn--------qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 55 TGVVDTTFDDKVR--------QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred cceecchhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566666632 22233344456666777776666655555666677777777777777665544
No 101
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.31 E-value=2.1e+02 Score=24.99 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HhhHHH---hhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhh
Q 008831 43 NEFQTRLEELSSENIELK----KQNATL---RFDLEKQEELNESFKEVINKFYEIRQQSLEVL 98 (552)
Q Consensus 43 ~~f~~R~eE~~S~~~~qK----~lN~aL---Q~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~ 98 (552)
..++.|+.||+...--|. ++|++| |..++++.+|.. -+++||-+++....+..
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr---~L~~kl~~~~~~~~~~~ 63 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR---LLTEKLKDLQPSAIASP 63 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcccccCCC
Confidence 357888888888776665 466655 444444444444 78899988876554443
No 102
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=31.08 E-value=1.1e+02 Score=28.31 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=42.5
Q ss_pred hhhhhhHHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 008831 7 VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 76 (552)
Q Consensus 7 VkFFQs~VA~AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq 76 (552)
++|-|+=-+. =|||.+-=|.||| +++.|+-.|+-+..-|+.+|.+|..-..+|+--
T Consensus 6 l~fLQ~Ew~r--~ErdR~~WeiERa------------EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 6 LHFLQTEWHR--FERDRNQWEIERA------------EMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHH--HHHHHHHhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665443 3899999999886 466788889999999999888887777777543
No 103
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=30.99 E-value=6.9e+02 Score=26.80 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 32 KEKEELMSQKFNEFQTRLEELS----SENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 32 KEkEE~m~qkf~~f~~R~eE~~----S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
|-.=..|-.+|++||+--+||+ +++...+..|..|+.+-..++-..+
T Consensus 26 kq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e 76 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQE 76 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567778999998777654 5556667778888777665554444
No 104
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.48 E-value=3.5e+02 Score=26.34 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=30.7
Q ss_pred hhhhchhccccccccccCCcc---hHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 103 EDKCACLLLDSAEMWSFNDTS---TSKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 103 ~eKcs~LL~DS~e~WSfn~tS---tskyIsALEeEle~lrasi~~LQskLRv 151 (552)
.+||+. |.--|+|.+.. ...-+..|+.+++.++++++.|+.+|-.
T Consensus 47 ~EKiGs----sn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 47 VEKIGS----SNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred hhhccC----eeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466653 45569998443 3345677777888888888888877654
No 105
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.20 E-value=1.1e+03 Score=28.56 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=55.7
Q ss_pred hhhhHHHHHHhhh--cchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 9 FFQGCMAAAFAER--DNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 9 FFQs~VA~AFAER--D~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
..|...|-|.-|- ||+..|+-|.|+-+-+++---.+|.+|+-+++...--.-+--|||.++...+++...
T Consensus 369 ll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 369 LLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3566777777776 999999999999999999999999999999988766555667888888776655443
No 106
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.94 E-value=1.2e+03 Score=29.02 Aligned_cols=47 Identities=23% Similarity=0.409 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 170 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkq 170 (552)
..+-|..||+++.+|+.+...++++++.+=|=--|++...+.|.|++
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999987555556667777666665
No 107
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=28.78 E-value=5.1e+02 Score=25.13 Aligned_cols=75 Identities=23% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhh----hhHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 008831 127 YISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII----HSDKFISNAIAELRLCHSQLRVHVVNSLEE 201 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi----~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~e 201 (552)
|..+++.+|.+.++++++|...=+-=-+=-+.+++.|+++|.+.. -++.+-.+.-.+|..+|..-.....+.|..
T Consensus 116 ~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~ 194 (216)
T cd07627 116 YWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 108
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.60 E-value=5.8e+02 Score=25.15 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhh--HHH----------H---HHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMG--LEI----------E---NHLKKSVRELEKKIIHSDKFISNAIAELRLCH 188 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvG--LEI----------E---nHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h 188 (552)
+++=|...++++-+++..+..|+.-..-+ .|. + ..-.+++..|+++.-+..+.+..-+..-..-|
T Consensus 87 ~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~ 166 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKH 166 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45556666666666666666655532211 010 0 11256777788888888888888888888888
Q ss_pred hhhHHHHHHhhhh
Q 008831 189 SQLRVHVVNSLEE 201 (552)
Q Consensus 189 ~~~R~~Im~lL~e 201 (552)
...+..+-.+..+
T Consensus 167 ~~~~~~~~~l~~e 179 (194)
T PF15619_consen 167 KEAQEEVKSLQEE 179 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887666543
No 109
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=28.60 E-value=1.4e+02 Score=26.14 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhh
Q 008831 128 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII 171 (552)
Q Consensus 128 IsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi 171 (552)
|.-+..++++.+.+++-+|.+||. |.++-+++|.-+|
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~-------Le~qk~E~EN~EI 39 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKE-------LEAQKTEAENLEI 39 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 567889999999999999999885 4555666666555
No 110
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=28.56 E-value=89 Score=25.49 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 008831 121 DTSTSKYISALEDELEKTRSSVENLQSK 148 (552)
Q Consensus 121 ~tStskyIsALEeEle~lrasi~~LQsk 148 (552)
-+++++-|+.|+.|+..|++++..+|+.
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3457899999999999999999999863
No 111
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=28.34 E-value=1.1e+03 Score=28.21 Aligned_cols=51 Identities=25% Similarity=0.212 Sum_probs=32.3
Q ss_pred hhHHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Q 008831 11 QGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 75 (552)
Q Consensus 11 Qs~VA~AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~e 75 (552)
||-+....||||....|.+... +.+++++..+..|+.-.++.+.++..+.+
T Consensus 113 ~~q~~rl~~E~er~~~El~~lr--------------~~lE~~q~~~e~~q~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 113 QEQFERLQAERERLQRELERLR--------------KTLEELQLRIETQQQTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888888766655 44555555555555555555555555555
No 112
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.27 E-value=79 Score=25.47 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 128 ISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 128 IsALEeEle~lrasi~~LQskLRv 151 (552)
|+||.++++.|..++..||+.+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888887653
No 113
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=28.12 E-value=1.5e+02 Score=30.12 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 008831 277 SETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 325 (552)
Q Consensus 277 S~alAQALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QV 325 (552)
.+++ +.|..+=..|+-|+|++.++.-=.+-++..|.++++||+..-|.
T Consensus 80 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (239)
T TIGR03789 80 DEQQ-QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQL 127 (239)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 77777777778888887777554444555555566666555553
No 114
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.10 E-value=1.6e+02 Score=26.34 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHH
Q 008831 43 NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 83 (552)
Q Consensus 43 ~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kV 83 (552)
+.|++|+.+++.++..+++-|..|+..+..-.+.-..+.++
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34889999999999999999998888887665555544444
No 115
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.79 E-value=2.2e+02 Score=22.48 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Q 008831 42 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 75 (552)
Q Consensus 42 f~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~e 75 (552)
....+..+.++++++.+++.-|+.|+.++..++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566667777777777778888877777733
No 116
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.75 E-value=2.7e+02 Score=28.89 Aligned_cols=100 Identities=22% Similarity=0.227 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhc
Q 008831 31 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLL 110 (552)
Q Consensus 31 AKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL 110 (552)
+.+.=+..-.++.+++.++..|+.+..+..+....|+.+...-+...+...++|.-+=.=|.|=.+. ...+..+...|+
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~-~~~l~~~~~~l~ 311 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQ-IEELEEQLKNLV 311 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHH-HHHHHHHhcccH
Confidence 3344445666788888899999988888887888888888877777777777776443333321111 115566777777
Q ss_pred cccccc---cccCCcchHHHHHHH
Q 008831 111 LDSAEM---WSFNDTSTSKYISAL 131 (552)
Q Consensus 111 ~DS~e~---WSfn~tStskyIsAL 131 (552)
.|+-.. =+|.|+=|..|=..|
T Consensus 312 GD~llaaa~isY~G~f~~~~R~~l 335 (344)
T PF12777_consen 312 GDSLLAAAFISYLGPFTPEYRQEL 335 (344)
T ss_dssp HHHHHHHHHHHCCCCTSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 776554 466687777775444
No 117
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.68 E-value=3.5e+02 Score=22.29 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHH
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 82 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~k 82 (552)
.+.++++.++.|+.+++..+...++-+.++..+.....++.+....
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888787777777777777766665544
No 118
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.66 E-value=1.2e+03 Score=28.42 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=26.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008831 29 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 67 (552)
Q Consensus 29 EKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ 67 (552)
++|..+-+.+.+.+..++..+.|+.+++...+++-...+
T Consensus 175 ~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~ 213 (1163)
T COG1196 175 EEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE 213 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777888877777776655444
No 119
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.51 E-value=9e+02 Score=27.00 Aligned_cols=193 Identities=17% Similarity=0.226 Sum_probs=95.2
Q ss_pred hhhHHHHHHhhhcchhHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhH
Q 008831 10 FQGCMAAAFAERDNSVMEAEK---------AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 80 (552)
Q Consensus 10 FQs~VA~AFAERD~slmEaEK---------AKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~ 80 (552)
|+--|...|++=|.-|.+||. ||..-...-+.+...+.++.+....+.+...+.. ++-.-.
T Consensus 73 ~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~----------~nr~~v 142 (569)
T PRK04778 73 WDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEE----------KNREEV 142 (569)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 455678888888888988884 4444444555555555555555444444443333 333344
Q ss_pred HHHHHHHHHHhhhhhhhhcc------chhhhhchhc--cccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 008831 81 KEVINKFYEIRQQSLEVLET------SWEDKCACLL--LDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 152 (552)
Q Consensus 81 ~kVI~KFyeiR~~~~e~~~~------s~~eKcs~LL--~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvG 152 (552)
..+-++|-++|..-+.-... .++.+=.-+= -+.-+.|+.+|- |+.| .+.++.++..++.|...+.--
T Consensus 143 ~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd----~~~A-~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 143 EQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD----YVEA-REILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC----HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777755443322 1222211111 122344666654 4444 223444444444444444332
Q ss_pred ----------H-HHHHHhHHhHHHHHHhhhhhHHH-HHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhcc
Q 008831 153 ----------L-EIENHLKKSVRELEKKIIHSDKF-ISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHC 220 (552)
Q Consensus 153 ----------L-EIEnHLkk~vr~LEKkqi~~dk~-i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~~ 220 (552)
| .=-+.|+.-.|.|..+.-.++.+ |..-|..|+.-.......|-++ +=-.....++.|+++|..+
T Consensus 218 P~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l---~l~~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 218 PELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL---DLDEAEEKNEEIQERIDQL 294 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHH
Confidence 2 22234555555555555555543 5556666655544444333322 1112334455555555555
No 120
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.42 E-value=2e+02 Score=28.22 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHhh
Q 008831 306 NVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKIC 351 (552)
Q Consensus 306 ~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~~~ 351 (552)
+-|..|+..+++||..+-+...|.-+..-++..++++|..|-.-|-
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766777778888999999886553
No 121
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.33 E-value=1.1e+03 Score=27.89 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHH
Q 008831 38 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 82 (552)
Q Consensus 38 m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~k 82 (552)
.-..+.....+++.|+-.+..+++.+..|+.+.++|+.+.+.|..
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888888888888888888888886654
No 122
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.86 E-value=5.7e+02 Score=28.92 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 70 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl 70 (552)
.+..++.+.++|+.++.++++.++..|..|+...
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777888888888888777777777665433
No 123
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=26.10 E-value=5e+02 Score=28.50 Aligned_cols=98 Identities=14% Similarity=0.272 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccc
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEM 116 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~ 116 (552)
.|..++..+..|.+|++..+.+-.=.++. ..+.++-...-.+..|+++|=+.+...-.-.+ ...+|.++.+.
T Consensus 4 ~~~~kl~~~~~r~~el~~~L~~p~v~~d~--~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~------a~~~l~~~~D~ 75 (363)
T COG0216 4 SLLEKLESLLERYEELEALLSDPEVISDP--DEYRKLSKEYAELEPIVEKYREYKKAQEDLED------AKEMLAEEKDP 75 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcccccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhccCCH
Confidence 56778888888888887666544322221 11122222222234677777776653322211 12344433221
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 117 WSFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 117 WSfn~tStskyIsALEeEle~lrasi~~LQskLRv 151 (552)
....-.++|+..+++++..|...|.+
T Consensus 76 ---------em~ema~~Ei~~~~~~~~~le~~L~~ 101 (363)
T COG0216 76 ---------EMREMAEEEIKELEAKIEELEEELKI 101 (363)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999887
No 124
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=26.09 E-value=2e+02 Score=29.57 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchh
Q 008831 126 KYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSH 205 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~ 205 (552)
+||++||.+.+.--+. .--|+.+-+- .|| -++..+|.+=+ .-+.|++.-.+.++.-.- |-+|+.+|+..
T Consensus 32 ~~I~eLe~~~~~~~~~-~D~e~~~~~~-~~e-t~~~~~r~ifq--rR~~Kiv~~A~~~~~~~~------~~~Lt~eEk~l 100 (223)
T COG1711 32 SFIKELEDEAGRAEEA-RDIEKYLLTD-RIE-TAKSDARSIFQ--RRYGKIVSRAIYDVPGET------ISNLTPEEKEL 100 (223)
T ss_pred HHHHHHHHHhhccccc-cCHHHHHHHH-HHH-HHHHHHHHHHH--HHHHHHHHHHHHhccccc------hhcCCHHHHHH
Confidence 7899999888665443 2222222221 111 12333332221 257788888887775433 88899999999
Q ss_pred hhhHHHHHHHhhhcc
Q 008831 206 IKSISDVIEEKTQHC 220 (552)
Q Consensus 206 iks~v~~ieekl~~~ 220 (552)
+..+++.|++-=-.|
T Consensus 101 y~~l~~~I~~e~~~~ 115 (223)
T COG1711 101 YEDLVNFIEDERISF 115 (223)
T ss_pred HHHHHHHHhhchhhc
Confidence 999999998754444
No 125
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.73 E-value=1.7e+02 Score=27.67 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhHHHhhhHHHHHHhHH
Q 008831 39 SQKFNEFQTRLEELSSENIELKK---QNATLRFDLEKQEELNE 78 (552)
Q Consensus 39 ~qkf~~f~~R~eE~~S~~~~qK~---lN~aLQ~dl~~~~eq~e 78 (552)
-.++..++..+.+...++.+.+. =|..||..++.++..+.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554 45566666666665555
No 126
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=25.24 E-value=1.2e+03 Score=27.55 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh----hhhHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 008831 125 SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI----IHSDKFISNAIAELRLCHSQLRVHVVNSLE 200 (552)
Q Consensus 125 skyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkq----i~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ 200 (552)
+.=+.-|-++++.+++.+.-+.+ ++..|+-|+.+. +.++-+|+|.+...+.--.+.=++.+..|.
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~-----------qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~ 188 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKT-----------QQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLK 188 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhh-----------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544332 233344444444 367888999999999999999999999999
Q ss_pred hcchhhhhHHHHHHHhhhcc
Q 008831 201 EGRSHIKSISDVIEEKTQHC 220 (552)
Q Consensus 201 ee~s~iks~v~~ieekl~~~ 220 (552)
++..-+.+-+...+.++..+
T Consensus 189 ~~~~~~~~q~~~le~ki~~l 208 (629)
T KOG0963|consen 189 DEEQNLQEQLEELEKKISSL 208 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888
No 127
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=25.05 E-value=1.4e+03 Score=28.41 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh
Q 008831 121 DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 170 (552)
Q Consensus 121 ~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkq 170 (552)
|--.|.|++.+|++-+++++-..+.-+==-..+||+-.||-.+-+|..+.
T Consensus 1131 DmcaselfneheeeS~ifdaa~nKiakiHe~AfEieknlkeQaielank~ 1180 (1424)
T KOG4572|consen 1131 DMCASELFNEHEEESGIFDAAGNKIAKIHEIAFEIEKNLKEQAIELANKG 1180 (1424)
T ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44578999999999999877665555545578999999888776666554
No 128
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.98 E-value=1.3e+03 Score=28.05 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=24.8
Q ss_pred hchHHHHHH-HHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 008831 294 LSQQEERHL-LERNVNSALQKKIEELQRNLFQVTTEKVKALMELA 337 (552)
Q Consensus 294 lSQqeER~l-lE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELA 337 (552)
|-.-++||- |..+... |....+.|+.-+..++.++...+|+.-
T Consensus 972 ~e~~~~r~~~l~~~~~d-l~~a~~~l~~~i~~~d~~~~~~f~~~f 1015 (1163)
T COG1196 972 YEEVEERYEELKSQRED-LEEAKEKLLEVIEELDKEKRERFKETF 1015 (1163)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444543 3333333 344467777777777777777777753
No 129
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=24.96 E-value=9.6e+02 Score=26.48 Aligned_cols=68 Identities=24% Similarity=0.223 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchh
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACL 109 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~L 109 (552)
-++++++-+.+-.+.++...+-|-.|--.+..+-+|.+.--++|+|-++--. --+.+...-..+|..|
T Consensus 117 tL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l 184 (391)
T KOG1850|consen 117 TLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLL 184 (391)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHH
Confidence 3567788888888888889999999999999999999999999998877554 3333333444455544
No 130
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.85 E-value=6.5e+02 Score=24.43 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHhHHhHHHHHHhh
Q 008831 126 KYISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKKI 170 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskL-RvGLEIEnHLkk~vr~LEKkq 170 (552)
.-...|+.+++.+++.++.|++++ |.--+++|.=+|-.|+.+.-.
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~ 63 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQAR 63 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888888888888888775 777899999888888877654
No 131
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.82 E-value=4.5e+02 Score=22.60 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=21.0
Q ss_pred CcchHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 121 DTSTSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 121 ~tStskyIsALEeEle~lrasi~~LQskLR 150 (552)
..+....+.-|+..++.+++.++.|++.+.
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~ 111 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLE 111 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777776654
No 132
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.82 E-value=5.5e+02 Score=25.28 Aligned_cols=70 Identities=29% Similarity=0.475 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhchH-----HHHHHHHHhhhHH------HHHHHHHHHHhhhhhch-------HHHHHHHHHHhHHHHH
Q 008831 282 QALQEKVAALLLLSQQ-----EERHLLERNVNSA------LQKKIEELQRNLFQVTT-------EKVKALMELAQLKQDY 343 (552)
Q Consensus 282 QALqEKv~ALlLlSQq-----eER~llE~~~n~~------Lq~~ieeLQrNl~QVt~-------EKVkaLmELAqLkqey 343 (552)
++||.-+.=||-+-.. +++-.+|..+... +..+|.+|+++|.+... +|...=+|+++|+-++
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~ 168 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA 168 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555443 4445566665544 55566666666666544 5777778999999999
Q ss_pred HHHHHHhh
Q 008831 344 QLLQEKIC 351 (552)
Q Consensus 344 ~lL~e~~~ 351 (552)
..+++...
T Consensus 169 ~~l~~~~~ 176 (190)
T PF05266_consen 169 EALKEEIE 176 (190)
T ss_pred HHHHHHHH
Confidence 99887553
No 133
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.71 E-value=5.2e+02 Score=25.29 Aligned_cols=45 Identities=29% Similarity=0.313 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHhhhHHHHHHhHHhHHH
Q 008831 38 MSQKFNEFQTRLEE-------LSSENIELKKQNATLRFDLEKQEELNESFKE 82 (552)
Q Consensus 38 m~qkf~~f~~R~eE-------~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~k 82 (552)
++.++.+=+.|-++ |-.+++..+..|++|+.|+.+++.+-+.+..
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~ 116 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRD 116 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777 5566666678888888888888887776533
No 134
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.21 E-value=1.7e+02 Score=29.94 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 008831 42 FNEFQTRLEELSSENIELKKQNATLRFDLEKQ 73 (552)
Q Consensus 42 f~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~ 73 (552)
.+++..|+.+|+.++...+.....|+.++..+
T Consensus 217 ~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 217 EDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888666555555555555555444
No 135
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.94 E-value=1.8e+02 Score=26.55 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhh-hhhHHHHHHhHHhHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhHHHHHHhhhh--
Q 008831 126 KYISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKKI-IHSDKFISNAIAELRLCHSQLRVHVVNSLEE-- 201 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskL-RvGLEIEnHLkk~vr~LEKkq-i~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~e-- 201 (552)
+-+..|++++..+.++++.|+.++ |.--+++|..++-.+..+... -...+|+..=|.- .+.+...+.-
T Consensus 11 ~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v--------~D~l~~a~~~~~ 82 (165)
T PF01025_consen 11 EEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPV--------LDNLERALEAAK 82 (165)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH--------HHHHHHHHCC-S
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhh
Confidence 344555666666667777776664 344578888777666554333 2444554443322 2222222221
Q ss_pred ----cch---hhhhHHHHHHHhhhcccccccccccCCCcccccccccc--ccceeeccCCCCccccCCCCCcc
Q 008831 202 ----GRS---HIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFE--CRDVHINNDADTNLVSQRNDPAY 265 (552)
Q Consensus 202 ----e~s---~iks~v~~ieekl~~~~d~~~e~n~~P~q~e~~~~e~e--crDVHvs~d~~p~~~~k~~~ps~ 265 (552)
... -+..+.+.|++-|.+.. +-.-+|.| .+.|.+- |-.+--+++..|+++-.---|++
T Consensus 83 ~~~~~~~~~~g~~~~~~~l~~~L~~~G-----v~~i~~~G-~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY 149 (165)
T PF01025_consen 83 SNEEEESLLEGLEMILKQLEDILEKNG-----VEEIEPVG-EPFDPNLHEAVETVPDPDKEPGTIVEVVRPGY 149 (165)
T ss_dssp HHCTCHHHHHHHHHHHHHHHHHHHTTT-----EEEE--TS-SB--TTTEEEEEEECSSSS-CTBEEEECC-EE
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHCC-----CEecCCCC-CCCCHHHheeheecCcCCCCcCeEEEEEecCE
Confidence 111 14444445555554442 32223332 2344444 44444444455777776666666
No 136
>smart00353 HLH helix loop helix domain.
Probab=23.92 E-value=82 Score=23.41 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=29.8
Q ss_pred HHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHH
Q 008831 85 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELE 136 (552)
Q Consensus 85 ~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle 136 (552)
..|.++|.-.|.+....-.+|+++|-. +-.||..|+++++
T Consensus 13 ~~~~~L~~lip~~~~~~k~~k~~iL~~------------ai~yi~~L~~~~~ 52 (53)
T smart00353 13 EAFDELRSLLPTLPNNKKLSKAEILRL------------AIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHH------------HHHHHHHHHHHHh
Confidence 358888887776654567788888754 5689999988764
No 137
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=23.87 E-value=6.4e+02 Score=29.12 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=12.8
Q ss_pred HHHHHhHHhHHHHHHhh
Q 008831 154 EIENHLKKSVRELEKKI 170 (552)
Q Consensus 154 EIEnHLkk~vr~LEKkq 170 (552)
-|.|-|++-||+=+|.+
T Consensus 348 ~Vl~aLkrYvRAEqKdr 364 (615)
T KOG3540|consen 348 RVLQALKRYVRAEQKDR 364 (615)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666888888888876
No 138
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.85 E-value=5.6e+02 Score=23.35 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhh--hhhHHHHHHhHHhHHHHHHhh----hhhHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 008831 129 SALEDELEKTRSSVENLQSKL--RMGLEIENHLKKSVRELEKKI----IHSDKFISNAIAELRLCHSQLRVHVVNSLE 200 (552)
Q Consensus 129 sALEeEle~lrasi~~LQskL--RvGLEIEnHLkk~vr~LEKkq----i~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ 200 (552)
..++..+.+.++++++|+..= |-+ --.-|+..+..+|... -.++.+-.+-..+|.++|..-...+..+|.
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~~~~~--ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~ 195 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPGIKPA--KVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALK 195 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554311 110 1112333444444333 266777778888999999877777776665
No 139
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.71 E-value=4.9e+02 Score=23.13 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhchH-------HHHHHHHHHhHHHHHHHHHHHh
Q 008831 293 LLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTE-------KVKALMELAQLKQDYQLLQEKI 350 (552)
Q Consensus 293 LlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QVt~E-------KVkaLmELAqLkqey~lL~e~~ 350 (552)
+|+|=|++-=-==-+++.||-.|+||...=.+.+.| +...--|-.|||++.+.-++|.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
No 140
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.66 E-value=2.3e+02 Score=28.57 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhh
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVL 98 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~ 98 (552)
..+++-..+.++++.++..|...|+-|..| ..+-+|.+.+..||+.+-.=....++.+
T Consensus 122 eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L----~elae~~~~la~~ie~l~~~~~~~~e~~ 179 (200)
T PF07412_consen 122 EALEENEKLHKEIEQKDEEIAKLKEENEEL----KELAEHVQYLAEVIERLTGQELDNLESL 179 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCcccccCc
Confidence 346677778889999988998888888854 4577888889999997655444444333
No 141
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.55 E-value=94 Score=26.07 Aligned_cols=26 Identities=31% Similarity=0.668 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLR 150 (552)
+..++ .|.++++.|++.++.|+.+||
T Consensus 64 i~~~l-~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 64 VKRIL-ELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 33444 488899999999999999887
No 142
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.53 E-value=2e+02 Score=30.92 Aligned_cols=44 Identities=30% Similarity=0.277 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 008831 278 ETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 324 (552)
Q Consensus 278 ~alAQALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~Q 324 (552)
-||-|-++-|++|+-.|-|.=|.+--|+.--.+ ..|-||+|++-
T Consensus 19 sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~---~aETLeln~ea 62 (389)
T KOG4687|consen 19 SALHQKCGAKTDAIRILGQDLEKFENEKDGLAA---RAETLELNLEA 62 (389)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHH
Confidence 478899999999999999999999888876666 89999999876
No 143
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.76 E-value=7.8e+02 Score=29.31 Aligned_cols=45 Identities=29% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 34 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 34 kEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
.=+.-..+|.+.+.+++++++++.-.++.|..+-..+...++.++
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e 662 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYE 662 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556667777777777777777777666666555544443
No 144
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.66 E-value=2.5e+02 Score=25.41 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=34.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHH
Q 008831 303 LERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 347 (552)
Q Consensus 303 lE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~ 347 (552)
||.++.+.++. |++|...+.++..|=...=||-++||+-...+.
T Consensus 13 le~~l~~l~~~-~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 13 LEQQLGQLLEE-LEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777776665 899999999988888888888888887766654
No 145
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=22.56 E-value=1.7e+02 Score=29.54 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHH-------HHHHHhHHHHHhhhhhhHHH
Q 008831 83 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDEL-------EKTRSSVENLQSKLRMGLEI 155 (552)
Q Consensus 83 VI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEl-------e~lrasi~~LQskLRvGLEI 155 (552)
..-+||.-|+-=... ++--.|+.-.-+-.|+.++=++. |+.+|-.+.|+-++| |--|
T Consensus 94 las~fy~qrnmyl~g---------------~~L~l~~~v~~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~-~~~~ 157 (192)
T COG5374 94 LASRFYAQRNMYLSG---------------SALFLSIVVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLR-KAQI 157 (192)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcchHHHHHHHh-hhhH
Confidence 346899888754443 22223333233557777777787 778888888888999 5445
Q ss_pred HHH-hHHhHHHHHHhhhhhHH
Q 008831 156 ENH-LKKSVRELEKKIIHSDK 175 (552)
Q Consensus 156 EnH-Lkk~vr~LEKkqi~~dk 175 (552)
.-| |+++..+|+|-+-.++.
T Consensus 158 ~le~Lqkn~~~~~k~~d~~ne 178 (192)
T COG5374 158 LLEGLQKNQEELFKLLDKYNE 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 444 88888888886655543
No 146
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.55 E-value=90 Score=25.97 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=28.9
Q ss_pred hhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 008831 108 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 147 (552)
Q Consensus 108 ~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQs 147 (552)
.++...-..||+.+ ...||+.|+.|...+++.+++=+.
T Consensus 12 ~~ig~dLs~lSv~E--L~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 12 HEIGEDLSLLSVEE--LEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred cccCCCchhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566777775 468999999999999988876443
No 147
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.46 E-value=3.2e+02 Score=24.39 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 76 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq 76 (552)
...+++.++.+++..+.+.+.-|.+|+.+...++.-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 345566666667777777777777777777776653
No 148
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=22.45 E-value=3.8e+02 Score=29.06 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchh
Q 008831 36 ELMSQKFNEFQTRLEELSSENIE------LKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACL 109 (552)
Q Consensus 36 E~m~qkf~~f~~R~eE~~S~~~~------qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~L 109 (552)
..|.+++..+.+|+.+++..+.+ +++... +-.++..++...+.+.++.....++.. +. . |
T Consensus 3 ~~~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~-~~k~~~~l~~~v~~~~~~~~~~~~~~~-----~~-e-------l 68 (360)
T TIGR00019 3 PSLLEKLESLLERYEELEALLSDPEVISDQDKLRK-LSKEYSQLEEIVDCYREYQQAQEDIKE-----AK-E-------I 68 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-H-------H
Confidence 35888899999999988877653 222211 223344443333333332222222211 10 0 1
Q ss_pred ccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 110 LLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 110 L~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRv 151 (552)
+.| +|. ...+-+++|+..+.+.+++|..+|.+
T Consensus 69 ~~~-------~D~---e~~~~a~~e~~~l~~~~~~~e~~l~~ 100 (360)
T TIGR00019 69 LEE-------SDP---EMREMAKEELEELEEKIEELEEQLKV 100 (360)
T ss_pred Hhc-------cCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 121 35778889999999999999887655
No 149
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=22.31 E-value=3e+02 Score=23.86 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008831 39 SQKFNEFQTRLEELSSENIELKKQNATLR 67 (552)
Q Consensus 39 ~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ 67 (552)
.+.-..+++.+.+++..+.++..++.+|.
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe 35 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALE 35 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666665554
No 150
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=22.23 E-value=3.1e+02 Score=24.40 Aligned_cols=57 Identities=28% Similarity=0.303 Sum_probs=43.9
Q ss_pred HHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 008831 289 AALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 348 (552)
Q Consensus 289 ~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e 348 (552)
++++==++--+-|+++.| ..|...|+-||..+-+ -.+=.+.-||--+|+++..+|+.
T Consensus 9 E~~~~g~l~~~~~~~~e~--~~L~eEI~~Lr~qve~-nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 9 EKLLDGKLPSESYLEEEN--EALKEEIQLLREQVEH-NPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHhcCCCCccchhHHHH--HHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333344456777776 7888999999999888 66777899999999999999884
No 151
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.20 E-value=1.6e+03 Score=28.02 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHH
Q 008831 33 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFY 88 (552)
Q Consensus 33 EkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFy 88 (552)
++=+.+-.+++..++++++++...--|-+.+..|+.++.++++..+.....+.-++
T Consensus 448 ~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ 503 (1041)
T KOG0243|consen 448 EQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLK 503 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667778888888888877776666777777777777777776655554444
No 152
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.49 E-value=5.4e+02 Score=26.08 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh---hHHHH------HHhHHhHHHHHHhhhhh--------HHHHHHHHHHHHHhhh
Q 008831 127 YISALEDELEKTRSSVENLQSKLRM---GLEIE------NHLKKSVRELEKKIIHS--------DKFISNAIAELRLCHS 189 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskLRv---GLEIE------nHLkk~vr~LEKkqi~~--------dk~i~Ngis~Lq~~h~ 189 (552)
=|.+|++.+.+|..........||+ .|-|| |-|++-|+..+++...+ -+=..|--.+-+++|.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~ 166 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCK 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3667777776665555554444444 23333 34788888777776421 1223344445666777
Q ss_pred hhHH
Q 008831 190 QLRV 193 (552)
Q Consensus 190 ~~R~ 193 (552)
+.|.
T Consensus 167 ~wrk 170 (201)
T KOG4603|consen 167 EWRK 170 (201)
T ss_pred HHHH
Confidence 7664
No 153
>PLN02939 transferase, transferring glycosyl groups
Probab=21.30 E-value=1.6e+03 Score=27.73 Aligned_cols=39 Identities=31% Similarity=0.356 Sum_probs=26.1
Q ss_pred HHHHHHHHHh----hchHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 008831 284 LQEKVAALLL----LSQQEERHLLERNVNSALQKKIEELQRNL 322 (552)
Q Consensus 284 LqEKv~ALlL----lSQqeER~llE~~~n~~Lq~~ieeLQrNl 322 (552)
+-|||+-|-. ..-|.|.+.+=-+-|+-|+.|++.|..-|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASL 340 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 6677776643 35566777777777777777777776543
No 154
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.92 E-value=8.4e+02 Score=25.00 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 008831 126 KYISALEDELEKTRSSVENLQSKLRMG 152 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLRvG 152 (552)
|+.+.+..|-|.|-..-.+||+.+-+|
T Consensus 186 Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 186 KQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555555566555443
No 155
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.91 E-value=6e+02 Score=22.65 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH-hHHhHHHHHHhhh-hhHHHHHHHHHHHHH
Q 008831 128 ISALEDELEKTRSSVENLQSKLRMGLEIENH-LKKSVRELEKKII-HSDKFISNAIAELRL 186 (552)
Q Consensus 128 IsALEeEle~lrasi~~LQskLRvGLEIEnH-Lkk~vr~LEKkqi-~~dk~i~Ngis~Lq~ 186 (552)
.++|.+|...|+.+|+.=.-=. -+-+||| |+...|.|..=.. --..++-.-|++|++
T Consensus 26 ~~~L~eEI~~Lr~qve~nPevt--r~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 26 NEALKEEIQLLREQVEHNPEVT--RFAMENIRLREELRRLQSFYVEGEREMLLQEISELRD 84 (86)
T ss_pred HHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3677777777777766533322 3668888 6555555543321 122344445555553
No 156
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=20.86 E-value=2.1e+02 Score=32.79 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhh----------hHHHHHHhHHhHHHHHHhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRM----------GLEIENHLKKSVRELEKKI 170 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRv----------GLEIEnHLkk~vr~LEKkq 170 (552)
.---|.+|-.|+|.|++++..||++.-. -|+=++-|++.|+.|+++.
T Consensus 227 L~~~Id~ln~eLE~l~~Ql~~L~s~~~ieve~N~R~~~~L~KF~sle~~v~~L~~~~ 283 (669)
T COG5244 227 LDGVIDELNGELERLRRQLVSLMSSHGIEVEENSRLKATLEKFQSLELKVNTLQEEL 283 (669)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999999999999999987643 4677777888888888775
No 157
>PHA02629 A-type inclusion body protein; Provisional
Probab=20.73 E-value=2.3e+02 Score=23.72 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHH
Q 008831 38 MSQKFNEFQTRLEE---------LSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEI 90 (552)
Q Consensus 38 m~qkf~~f~~R~eE---------~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyei 90 (552)
|+.|++.+++.++. -.|.|+=....-.-|..+|.+-.|- .||++||.|.
T Consensus 1 ml~kiadle~klrd~gng~~gngc~s~c~ferk~iavleaelr~~met----ik~lekf~ef 58 (61)
T PHA02629 1 MLRKIADLEKKLRDGGNGNGGNGCTSSCEFERKIIAVLEAELRKSMET----IKALEKFMEF 58 (61)
T ss_pred CchhHHHHHHHHHccCCCCCCCCccchhHhhHHHHHHHHHHHHHHHHH----HHHHHHHHhh
Confidence 67788888888875 5677877666666677666665543 3788999774
No 158
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.43 E-value=1.1e+02 Score=28.47 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=31.8
Q ss_pred hhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 102 WEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 102 ~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLR 150 (552)
..+|-..+++|-. ..+.+-..+|.++++.|+.+|..|||++.
T Consensus 66 ~~r~i~~ml~~~~-------~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 66 IPRKIEEMLSDLE-------VARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred hhHHHHHHHhhcc-------ccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555565554 33667789999999999999999999985
No 159
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.15 E-value=7.1e+02 Score=23.15 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHH
Q 008831 38 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 81 (552)
Q Consensus 38 m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~ 81 (552)
...++.+.+.++.+++..+.+..+...+++.++..+++......
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34577888888888888888888888888888887766655433
No 160
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.13 E-value=9.2e+02 Score=24.48 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=19.3
Q ss_pred hhhhhH--HHHHHhhhcchhHHHHHhHHHH
Q 008831 8 KFFQGC--MAAAFAERDNSVMEAEKAKEKE 35 (552)
Q Consensus 8 kFFQs~--VA~AFAERD~slmEaEKAKEkE 35 (552)
.|++++ ++.+..--|.+|.+.||..+.+
T Consensus 180 ~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~ 209 (297)
T PF02841_consen 180 EFLQSKESMENSILQADQQLTEKEKEIEEE 209 (297)
T ss_dssp HHHHHCHHHHHHHHHH-TTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466664 6778888999999988876644
No 161
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.02 E-value=4.5e+02 Score=22.01 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHh
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 79 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~ 79 (552)
+++.+..--..+++.+.+-...|..|+.++..++++.+-
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555566777788888888777763
Done!