Query 008831
Match_columns 552
No_of_seqs 17 out of 19
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 12:44:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0z_A RHO-associated protein 84.8 26 0.0009 32.9 17.6 125 28-189 29-153 (168)
2 2v71_A Nuclear distribution pr 84.0 30 0.001 32.9 15.9 90 28-150 19-112 (189)
3 1i84_S Smooth muscle myosin he 80.4 3.3 0.00011 47.1 7.9 40 311-350 1121-1160(1184)
4 1deq_A Fibrinogen (alpha chain 80.2 4.8 0.00016 42.0 8.3 88 97-187 39-139 (390)
5 1m1j_B Fibrinogen beta chain; 75.6 24 0.00083 37.4 12.1 51 124-174 91-141 (464)
6 1am9_A Srebp-1A, protein (ster 72.7 4.6 0.00016 32.9 4.7 53 83-149 21-73 (82)
7 3tnu_B Keratin, type II cytosk 72.6 47 0.0016 28.7 11.8 20 126-145 82-101 (129)
8 1nkp_A C-MYC, MYC proto-oncoge 72.0 5.5 0.00019 33.0 5.1 54 82-147 20-73 (88)
9 3tnu_A Keratin, type I cytoske 69.0 45 0.0015 29.0 10.5 22 125-146 83-104 (131)
10 4h22_A Leucine-rich repeat fli 68.9 27 0.00093 30.7 8.9 64 15-78 19-82 (103)
11 1fxk_A Prefoldin; archaeal pro 68.8 24 0.00081 28.7 8.2 83 37-149 5-88 (107)
12 1hlo_A Protein (transcription 68.5 6.5 0.00022 31.6 4.7 52 83-147 27-78 (80)
13 3ghg_A Fibrinogen alpha chain; 67.1 6 0.00021 42.9 5.4 81 136-220 67-150 (562)
14 1m1j_A Fibrinogen alpha subuni 66.7 16 0.00054 39.2 8.3 55 142-196 92-146 (491)
15 1nkp_B MAX protein, MYC proto- 66.5 9.2 0.00032 30.8 5.2 53 83-148 17-69 (83)
16 2dfs_A Myosin-5A; myosin-V, in 65.0 45 0.0016 38.2 12.2 33 41-73 922-954 (1080)
17 3oja_B Anopheles plasmodium-re 62.3 31 0.0011 35.0 9.4 60 33-92 530-589 (597)
18 1ytz_T Troponin T; muscle, THI 62.3 24 0.00081 30.8 7.3 45 275-325 45-89 (107)
19 2dfs_A Myosin-5A; myosin-V, in 61.6 39 0.0013 38.7 10.9 22 36-57 924-945 (1080)
20 1wt6_A Myotonin-protein kinase 61.5 47 0.0016 28.2 8.7 65 15-79 2-70 (81)
21 3oja_B Anopheles plasmodium-re 60.9 85 0.0029 31.8 12.2 18 130-147 541-558 (597)
22 3mq9_A Bone marrow stromal ant 58.6 62 0.0021 32.2 10.6 60 272-335 367-432 (471)
23 1zme_C Proline utilization tra 58.1 9.5 0.00032 28.7 3.7 27 124-150 42-68 (70)
24 2zqm_A Prefoldin beta subunit 57.0 61 0.0021 26.5 8.7 85 36-150 9-94 (117)
25 3s4r_A Vimentin; alpha-helix, 56.9 25 0.00085 29.6 6.4 45 305-349 48-92 (93)
26 1ic2_A Tropomyosin alpha chain 56.3 71 0.0024 25.8 8.8 55 26-80 13-67 (81)
27 2efk_A CDC42-interacting prote 53.4 1.4E+02 0.0048 27.6 14.4 50 3-52 107-156 (301)
28 2wt7_A Proto-oncogene protein 52.6 41 0.0014 26.1 6.5 47 302-348 6-58 (63)
29 1t2k_D Cyclic-AMP-dependent tr 51.9 43 0.0015 25.7 6.5 47 302-348 5-57 (61)
30 1f5n_A Interferon-induced guan 51.8 2.6E+02 0.0087 30.1 14.9 53 8-60 463-521 (592)
31 1i84_S Smooth muscle myosin he 50.2 91 0.0031 35.6 11.4 12 11-22 825-836 (1184)
32 1deq_A Fibrinogen (alpha chain 49.5 69 0.0024 33.6 9.4 82 135-221 69-154 (390)
33 1nlw_A MAD protein, MAX dimeri 49.0 18 0.00063 29.5 4.2 55 83-149 16-70 (80)
34 2wt7_A Proto-oncogene protein 46.6 48 0.0017 25.7 6.1 38 47-84 23-60 (63)
35 2wvr_A Geminin; DNA replicatio 46.2 74 0.0025 30.9 8.4 61 36-100 111-171 (209)
36 1ci6_A Transcription factor AT 45.9 39 0.0013 26.4 5.5 38 48-85 24-61 (63)
37 1l8d_A DNA double-strand break 45.2 62 0.0021 26.6 6.9 25 126-150 64-88 (112)
38 3vem_A Helicase protein MOM1; 44.5 1.5E+02 0.005 26.6 9.5 55 62-152 33-87 (115)
39 3t98_B Nucleoporin NUP58/NUP45 44.4 88 0.003 26.6 7.8 58 37-94 9-74 (93)
40 2akf_A Coronin-1A; coiled coil 44.3 11 0.00037 27.1 1.8 22 128-149 1-22 (32)
41 3swy_A Cyclic nucleotide-gated 43.8 58 0.002 24.9 5.9 40 130-169 2-45 (46)
42 1j1d_B Troponin T, TNT; THIN f 43.6 18 0.0006 31.6 3.5 45 275-325 45-89 (106)
43 2pms_C Pneumococcal surface pr 43.5 61 0.0021 29.3 7.0 42 37-78 10-61 (125)
44 1t2k_D Cyclic-AMP-dependent tr 43.0 53 0.0018 25.2 5.7 35 49-83 24-58 (61)
45 2jo8_A Serine/threonine-protei 42.6 49 0.0017 25.9 5.4 39 162-200 11-49 (51)
46 2fxo_A Myosin heavy chain, car 41.5 1.5E+02 0.005 25.8 9.0 53 33-85 69-121 (129)
47 4ati_A MITF, microphthalmia-as 39.7 13 0.00043 32.4 2.0 68 84-168 43-112 (118)
48 3ghg_A Fibrinogen alpha chain; 39.7 96 0.0033 33.9 9.0 114 97-221 36-162 (562)
49 2fxo_A Myosin heavy chain, car 39.4 1.1E+02 0.0037 26.6 7.8 49 31-79 74-122 (129)
50 3m91_A Proteasome-associated A 39.2 90 0.0031 24.2 6.4 42 46-87 8-49 (51)
51 3na7_A HP0958; flagellar bioge 38.6 2.6E+02 0.0088 26.4 17.4 46 124-169 88-133 (256)
52 3u59_A Tropomyosin beta chain; 37.1 1.8E+02 0.0062 24.2 8.8 52 27-78 17-68 (101)
53 1joc_A EEA1, early endosomal a 36.7 1.1E+02 0.0038 26.4 7.5 51 20-70 5-55 (125)
54 1lrz_A FEMA, factor essential 36.6 95 0.0032 31.0 8.0 54 124-178 245-298 (426)
55 1j1d_C Troponin I, TNI; THIN f 36.5 81 0.0028 28.5 6.7 41 275-321 61-101 (133)
56 2fic_A Bridging integrator 1; 34.5 2.7E+02 0.0091 25.5 10.0 24 15-38 147-170 (251)
57 3ghg_B Fibrinogen beta chain; 34.1 1.7E+02 0.0057 31.3 9.6 116 104-220 61-182 (461)
58 3d5a_X RF1, peptide chain rele 34.0 78 0.0027 32.6 6.9 95 38-152 1-95 (354)
59 3swk_A Vimentin; cytoskeleton, 33.7 44 0.0015 27.7 4.2 35 315-349 2-36 (86)
60 3ryc_E Stathmin-4; alpha-tubul 33.3 2.7E+02 0.0094 25.6 9.7 63 282-345 46-114 (143)
61 1jnm_A Proto-oncogene C-JUN; B 32.6 46 0.0016 25.6 4.0 37 47-83 22-58 (62)
62 3ajw_A Flagellar FLIJ protein; 32.4 2.2E+02 0.0076 23.8 10.7 29 124-152 72-100 (150)
63 3swf_A CGMP-gated cation chann 32.1 89 0.003 26.1 5.7 42 130-171 4-49 (74)
64 1go4_E MAD1 (mitotic arrest de 31.7 2.2E+02 0.0077 24.7 8.4 27 125-151 67-93 (100)
65 3a7o_A Autophagy protein 16; c 31.6 62 0.0021 27.1 4.7 35 125-159 17-64 (75)
66 1jnm_A Proto-oncogene C-JUN; B 31.0 61 0.0021 25.0 4.4 45 304-348 7-57 (62)
67 3ol1_A Vimentin; structural ge 30.9 83 0.0028 27.2 5.7 45 305-349 12-56 (119)
68 1g6u_A Domain swapped dimer; d 30.9 46 0.0016 25.4 3.5 25 127-151 21-45 (48)
69 3na7_A HP0958; flagellar bioge 30.9 3.4E+02 0.012 25.5 19.1 26 126-151 60-85 (256)
70 3ssb_C IMPI alpha, inducible m 30.8 13 0.00045 27.8 0.5 14 239-252 21-34 (40)
71 3mq7_A Bone marrow stromal ant 29.3 1.3E+02 0.0044 27.2 6.7 48 302-350 61-108 (121)
72 1m1j_C Fibrinogen gamma chain; 28.9 3.4E+02 0.011 28.3 10.7 26 125-150 83-108 (409)
73 3hnw_A Uncharacterized protein 28.7 1.5E+02 0.0052 26.4 7.1 50 302-351 71-120 (138)
74 1a93_B MAX protein, coiled coi 28.0 58 0.002 23.8 3.5 22 49-70 9-30 (34)
75 3nmd_A CGMP dependent protein 27.9 1.6E+02 0.0056 24.3 6.6 26 62-87 41-66 (72)
76 2er8_A Regulatory protein Leu3 27.6 29 0.001 26.3 2.0 25 123-147 46-70 (72)
77 3u59_A Tropomyosin beta chain; 27.6 2.7E+02 0.0091 23.2 12.3 35 30-64 6-40 (101)
78 3ra3_A P1C; coiled coil domain 27.4 30 0.001 24.0 1.8 22 128-149 2-23 (28)
79 1j1e_C Troponin I, TNI; THIN f 27.1 1.1E+02 0.0039 28.9 6.3 44 275-324 61-104 (180)
80 1gd2_E Transcription factor PA 26.8 1.1E+02 0.0038 24.8 5.4 38 41-78 30-67 (70)
81 3u1c_A Tropomyosin alpha-1 cha 26.5 2.9E+02 0.0098 23.2 9.3 52 27-78 17-68 (101)
82 2oqq_A Transcription factor HY 26.3 1.5E+02 0.005 22.6 5.5 25 126-150 3-27 (42)
83 1p9i_A Cortexillin I/GCN4 hybr 26.0 85 0.0029 22.2 3.9 26 124-149 4-29 (31)
84 3hnw_A Uncharacterized protein 25.8 2.1E+02 0.0071 25.5 7.5 35 41-75 97-131 (138)
85 2zdi_C Prefoldin subunit alpha 25.7 3.3E+02 0.011 23.7 9.4 29 121-149 93-121 (151)
86 3a5c_G V-type ATP synthase sub 25.5 3.8E+02 0.013 25.3 9.6 38 17-59 19-56 (223)
87 1m1j_B Fibrinogen beta chain; 25.3 6.3E+02 0.022 26.8 14.6 9 241-249 214-222 (464)
88 3i00_A HIP-I, huntingtin-inter 24.3 1.7E+02 0.0058 25.8 6.5 74 20-93 12-100 (120)
89 2zxx_A Geminin; coiled-coil, c 23.9 3.2E+02 0.011 22.9 8.1 46 37-86 31-76 (79)
90 3ghg_C Fibrinogen gamma chain; 23.7 6.4E+02 0.022 26.4 11.7 87 124-219 29-137 (411)
91 2efr_A General control protein 23.7 4.3E+02 0.015 24.3 10.7 26 28-53 30-55 (155)
92 3fx7_A Putative uncharacterize 23.2 2E+02 0.0068 24.8 6.5 29 50-78 9-37 (94)
93 2v71_A Nuclear distribution pr 22.9 4.9E+02 0.017 24.6 13.9 34 31-64 40-73 (189)
94 1hjb_A Ccaat/enhancer binding 22.6 1.6E+02 0.0055 24.8 5.7 35 43-84 39-73 (87)
95 1hjb_A Ccaat/enhancer binding 22.5 1.7E+02 0.0056 24.7 5.8 39 29-67 32-70 (87)
96 4f61_I Stathmin-like domain R4 21.8 3.9E+02 0.014 26.4 9.1 75 249-345 25-113 (240)
97 3oja_A Leucine-rich immune mol 21.7 1.2E+02 0.0039 30.4 5.6 29 59-87 433-461 (487)
98 1gu4_A CAAT/enhancer binding p 20.9 1.6E+02 0.0056 24.2 5.4 34 41-81 37-70 (78)
99 1ik9_A DNA repair protein XRCC 20.8 4.1E+02 0.014 25.2 8.8 46 37-82 122-167 (213)
100 3cvf_A Homer-3, homer protein 20.6 3.7E+02 0.013 22.4 8.5 49 42-93 22-70 (79)
101 3viq_B Mating-type switching p 20.3 1E+02 0.0036 26.1 4.1 29 122-150 4-32 (85)
No 1
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.78 E-value=26 Score=32.88 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=88.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhc
Q 008831 28 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 107 (552)
Q Consensus 28 aEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs 107 (552)
+.|.|-..-.+....+.++.-++|++..|.-.....+.|+.+++.+-.+++.= -|.++. ..+
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE---------r~~r~q-~se-------- 90 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE---------RRDRGH-DSE-------- 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HHH--------
Confidence 45667777788889999999999999999999999999999999999888721 111111 000
Q ss_pred hhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 008831 108 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 187 (552)
Q Consensus 108 ~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~ 187 (552)
++. -+..-|.+|++|++.++....+++..- ++|+.++..|||...-+.==+.=.|-.+|+-
T Consensus 91 -~~~-----------elq~ri~~L~~El~~~k~~~~k~~~e~-------r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 91 -MIG-----------DLQARITSLQEEVKHLKHNLEKVEGER-------KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp -HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 000 022368888888888888887776654 3689999999999876653333455666655
Q ss_pred hh
Q 008831 188 HS 189 (552)
Q Consensus 188 h~ 189 (552)
|-
T Consensus 152 ~e 153 (168)
T 3o0z_A 152 LE 153 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.02 E-value=30 Score=32.89 Aligned_cols=90 Identities=27% Similarity=0.291 Sum_probs=52.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchh
Q 008831 28 AEKAKEKEELMSQKFNEFQTRLEELSSENIE----LKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE 103 (552)
Q Consensus 28 aEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~----qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~ 103 (552)
|++.+.+=+.+-..|++|+.=-+||+..+.. ....|..|+...+.++...+ +|-
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e----------------------~~k 76 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVE----------------------ALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH
Confidence 4455556666667777777766665544433 33345555555555544444 555
Q ss_pred hhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 104 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 104 eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLR 150 (552)
.|....-.+ -.+-|+.|+.|+..|+...+.|+.+||
T Consensus 77 ~K~~~~~~e-----------~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 77 EKLEHQYAQ-----------SYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554322111 125688999999988877766665554
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=80.42 E-value=3.3 Score=47.09 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHh
Q 008831 311 LQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKI 350 (552)
Q Consensus 311 Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~~ 350 (552)
|+..+++|+..|.....+.-+.-.+...|.++...|++.+
T Consensus 1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~I 1160 (1184)
T 1i84_S 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160 (1184)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544333333444455555555555433
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.20 E-value=4.8 Score=42.03 Aligned_cols=88 Identities=17% Similarity=0.304 Sum_probs=40.1
Q ss_pred hhccchhhhh--chhccccccccccCCcchHHHHHHHHHHHHHH-----------HHhHHHHHhhhhhhHHHHHHhHHhH
Q 008831 97 VLETSWEDKC--ACLLLDSAEMWSFNDTSTSKYISALEDELEKT-----------RSSVENLQSKLRMGLEIENHLKKSV 163 (552)
Q Consensus 97 ~~~~s~~eKc--s~LL~DS~e~WSfn~tStskyIsALEeEle~l-----------rasi~~LQskLRvGLEIEnHLkk~v 163 (552)
|.++.|-.|| .|=|.+.-+-|..+ ..+-|..|-++|+.+ ++-.+.|..++...-..+|-...-.
T Consensus 39 C~DeDwG~kCPsGCrLqg~Ldk~er~---~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s 115 (390)
T 1deq_A 39 CSDEDWNTKCPSGCRMKGLIDEVDQD---FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN 115 (390)
T ss_pred CchhhccCCCCccchHHHHHHHhhhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 4444666666 34444444444322 223344444444333 2223333333333344444444444
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHh
Q 008831 164 RELEKKIIHSDKFISNAIAELRLC 187 (552)
Q Consensus 164 r~LEKkqi~~dk~i~Ngis~Lq~~ 187 (552)
..||++++++++-|.+.|..|+-.
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLL 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 555666655555555555544433
No 5
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.56 E-value=24 Score=37.35 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhH
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSD 174 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~d 174 (552)
.++|-..++..++.|++.++.|-++-.-..++.++|+......|++.--+.
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~ 141 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDND 141 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchh
Confidence 578888888889999999999988888778888888777777766544333
No 6
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=72.69 E-value=4.6 Score=32.93 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 83 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 83 VI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskL 149 (552)
+=+.|.++|.-.|.+ ++-.+|+++|-. +-.||..|+.++..|....+.|+..+
T Consensus 21 in~~f~~L~~lvP~~--~~k~~Ka~IL~~------------Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 21 INDKIIELKDLVVGT--EAKLNKSAVLRK------------AIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHTCS--SCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335788888877653 255667777632 66899999999999998888887654
No 7
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.61 E-value=47 Score=28.74 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 008831 126 KYISALEDELEKTRSSVENL 145 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~L 145 (552)
.-|+.||.++..+|..+...
T Consensus 82 ~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 82 NKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 55888999999998887764
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.05 E-value=5.5 Score=33.03 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 008831 82 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 147 (552)
Q Consensus 82 kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQs 147 (552)
++=+.|..+|.-.|.+..+.-..|.++|-. +-.||..|+++...+...++.|+.
T Consensus 20 ~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~------------A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 20 ELKRSFFALRDQIPELENNEKAPKVVILKK------------ATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTCTTCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999988766666677777632 568999999999888887776554
No 9
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.98 E-value=45 Score=28.98 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 008831 125 SKYISALEDELEKTRSSVENLQ 146 (552)
Q Consensus 125 skyIsALEeEle~lrasi~~LQ 146 (552)
..-|+.||.++..+|..+....
T Consensus 83 q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999988877643
No 10
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=68.89 E-value=27 Score=30.69 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=56.7
Q ss_pred HHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 15 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 15 A~AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
||-.-|+-+-+-+++--|-+=|.|-..|++++...+|-.+++..+|+..+.|+.++..+++|..
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777788898999999999999999999999999999999999999999999988765
No 11
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=68.82 E-value=24 Score=28.70 Aligned_cols=83 Identities=8% Similarity=0.157 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhcc-chhhhhchhcccccc
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET-SWEDKCACLLLDSAE 115 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~-s~~eKcs~LL~DS~e 115 (552)
.++.+|+.++.++..+.+++...+ .++... ..|++ .+.. ..+.+|--++++.-.
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~-------~~~~e~-------~~~~~-----------EL~~l~~d~~vy~~iG~vfv 59 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVE-------MQINET-------QKALE-----------ELSRAADDAEVYKSSGNILI 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH-----------HHHHSCTTCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH-----------HHHcCCCCchHHHHHhHHHH
Confidence 467788888888887766543332 222222 22332 2222 223455555554322
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 116 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 116 ~WSfn~tStskyIsALEeEle~lrasi~~LQskL 149 (552)
..+...++..|++..+.+...|+.|+.++
T Consensus 60 -----~~~~~e~~~~L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 60 -----RVAKDELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp -----EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777666666666554
No 12
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=68.51 E-value=6.5 Score=31.63 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 008831 83 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 147 (552)
Q Consensus 83 VI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQs 147 (552)
+=..|.++|.-.|.+.. .-..|.++|-. +-.||..|++++..|...++.|+.
T Consensus 27 in~~f~~Lr~lvP~~~~-~k~sK~~iL~~------------Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 27 IKDSFHSLRDSVPSLQG-EKASRAQILDK------------ATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHSGGGTT-SCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCcCCCC-CCccHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578888988876552 22455555532 668999999999999999988874
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.05 E-value=6 Score=42.88 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=50.8
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhH--HHHHHHHH-HHHHhhhhhHHHHHHhhhhcchhhhhHHHH
Q 008831 136 EKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSD--KFISNAIA-ELRLCHSQLRVHVVNSLEEGRSHIKSISDV 212 (552)
Q Consensus 136 e~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~d--k~i~Ngis-~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ 212 (552)
+.||++++.+|.+= -+|+++.+.-...|.++|.... .-..|-++ +|++.|...+..|.+-+ .--.-|.++|..
T Consensus 67 NELKnqLEdlsKns---Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsnLed 142 (562)
T 3ghg_A 67 NKLKNSLFEYQKNN---KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHTHHHHHH---HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55666666664433 3567776666666666664322 12456666 88888888888888877 444555666666
Q ss_pred HHHhhhcc
Q 008831 213 IEEKTQHC 220 (552)
Q Consensus 213 ieekl~~~ 220 (552)
+--+|.+|
T Consensus 143 q~~kIQRL 150 (562)
T 3ghg_A 143 QLVDMKRL 150 (562)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666666
No 14
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=66.73 E-value=16 Score=39.21 Aligned_cols=55 Identities=13% Similarity=0.320 Sum_probs=32.7
Q ss_pred HHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 008831 142 VENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 196 (552)
Q Consensus 142 i~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im 196 (552)
.+.|..++...-..+|-...-...||+++++++.-|-+.|.-|+-.-.-.|+...
T Consensus 92 ~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~s 146 (491)
T 1m1j_A 92 INILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVV 146 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455566666666788888888777777776665554444444333
No 15
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=66.51 E-value=9.2 Score=30.77 Aligned_cols=53 Identities=11% Similarity=0.263 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 008831 83 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 148 (552)
Q Consensus 83 VI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQsk 148 (552)
+=+.|.++|.-.|.+.. +-..|.++|-. +-.||..|++++..+...++.|...
T Consensus 17 in~~f~~Lr~lvP~~~~-~k~sK~~iL~~------------Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQG-EKASRAQILDK------------ATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHTTSGGGTT-SCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-CCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889988887652 22456655532 6689999998888887776666543
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.00 E-value=45 Score=38.21 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=1.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 73 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~ 73 (552)
.-.+++.++.|++..+.+.++-|..|+..+..+
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~ 954 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954 (1080)
T ss_dssp -----------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777666666666554433
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.30 E-value=31 Score=34.98 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhh
Q 008831 33 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 92 (552)
Q Consensus 33 EkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~ 92 (552)
+..+..-+++..+++.+++++..+.++|+.-..|+.+.+..+.+...+.+.+++=|+-|.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 530 TEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 333444455555556666666666677777777777777777777766666666666554
No 18
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=62.26 E-value=24 Score=30.81 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 008831 275 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 325 (552)
Q Consensus 275 d~S~alAQALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QV 325 (552)
+.=..+|+-||+++..| ++|||=||..|..- ...|.+|...+.++
T Consensus 45 ~~L~e~~keLh~~I~~l-----EeEKYDlE~kv~kq-~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQL-----QTEKYDFAEQIKRK-KYEIVTLRNRIDQA 89 (107)
T ss_dssp SHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHhh-hhHHHHHHHHHHHh
Confidence 66678999999998775 89999999988775 33477776655553
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=61.64 E-value=39 Score=38.75 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008831 36 ELMSQKFNEFQTRLEELSSENI 57 (552)
Q Consensus 36 E~m~qkf~~f~~R~eE~~S~~~ 57 (552)
..+-.++.+++.|+++.+..+.
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~ 945 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYK 945 (1080)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666665544443
No 20
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=61.48 E-value=47 Score=28.18 Aligned_cols=65 Identities=26% Similarity=0.259 Sum_probs=38.7
Q ss_pred HHHHhhhcchhHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHh
Q 008831 15 AAAFAERDNSVMEAEKAKEKEELMSQ----KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 79 (552)
Q Consensus 15 A~AFAERD~slmEaEKAKEkEE~m~q----kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~ 79 (552)
|-+|++-|-++.|+--|=+.|----| ++..+..-..-.+|.+.+-+..|..|+.++..++++++-
T Consensus 2 ~~~~~~~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 2 AMAEAEAEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788889899988877776643333 333333333334555666677888899999999888874
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.85 E-value=85 Score=31.83 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHHHHHh
Q 008831 130 ALEDELEKTRSSVENLQS 147 (552)
Q Consensus 130 ALEeEle~lrasi~~LQs 147 (552)
.|++|.+.++..++.-+.
T Consensus 541 ~~~~~~~~le~~~~~~~~ 558 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRA 558 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHhhhhh
Confidence 344444444444444333
No 22
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.60 E-value=62 Score=32.19 Aligned_cols=60 Identities=25% Similarity=0.241 Sum_probs=41.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhc------hHHHHHHHH
Q 008831 272 RKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVT------TEKVKALME 335 (552)
Q Consensus 272 ~~~d~S~alAQALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QVt------~EKVkaLmE 335 (552)
|..+..+ .+..+++++.++|==...+. =-+|+++.||+++.++|+|+.|+. |--|-+||+
T Consensus 367 G~~t~ee-al~~~~~~i~~~l~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 367 GRQTVDE-ALKDAQTRITAARDGLRAVM---EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp SSSCHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHHHHHHHHhhHHHH---HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 3344444 45667888888763222221 125999999999999999999964 455777875
No 23
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=58.11 E-value=9.5 Score=28.71 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLR 150 (552)
..+||..||++++.|...|..|++.|.
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999998763
No 24
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.05 E-value=61 Score=26.55 Aligned_cols=85 Identities=13% Similarity=0.263 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhcc-chhhhhchhccccc
Q 008831 36 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET-SWEDKCACLLLDSA 114 (552)
Q Consensus 36 E~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~-s~~eKcs~LL~DS~ 114 (552)
..++.+|+.++.++..+.+++...+ .++..+ ..|++ .+.. .-+.+|-.++.+-
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~-------~~~~e~-------~~~~~-----------eL~~l~~d~~vy~~iG~v- 62 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQ-------LELTEA-------KKALD-----------EIESLPDDAVVYKTVGTL- 62 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH-----------HHHTSCTTCCEEEEETTE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH-----------HHHcCCCCcHhHHHhhHH-
Confidence 4567788888888887766654332 222222 23333 2222 2234565555543
Q ss_pred cccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 115 EMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 115 e~WSfn~tStskyIsALEeEle~lrasi~~LQskLR 150 (552)
|=..+...++..|++..+.+...|..|..++.
T Consensus 63 ----fv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 63 ----IVKTTKDKAVAELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp ----EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344667777777777777777777766653
No 25
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=56.95 E-value=25 Score=29.55 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=38.8
Q ss_pred HhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHH
Q 008831 305 RNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEK 349 (552)
Q Consensus 305 ~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~ 349 (552)
.+.....+..|.+|++.|.+++.||.++..|+..|..+...++.|
T Consensus 48 ~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 48 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556678899999999999999999999999999998888753
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=56.26 E-value=71 Score=25.75 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=47.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhH
Q 008831 26 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 80 (552)
Q Consensus 26 mEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~ 80 (552)
+|.+.|.++-+..-+++.+.+.|.......+...++-+..|+.|+...+++....
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999999999999999888888888899998888876643
No 27
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=53.45 E-value=1.4e+02 Score=27.57 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=34.2
Q ss_pred hhhhhhhhhhHHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008831 3 AEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEEL 52 (552)
Q Consensus 3 ~EKQVkFFQs~VA~AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~ 52 (552)
.++..|=+..-+..+-.++....-+.+|+|.+=+..-++........+..
T Consensus 107 ~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a 156 (301)
T 2efk_A 107 MKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERL 156 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666677777888888888888888877666666665555555444
No 28
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.65 E-value=41 Score=26.15 Aligned_cols=47 Identities=28% Similarity=0.223 Sum_probs=39.3
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 008831 302 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 348 (552)
Q Consensus 302 llE~~~n~~Lq------~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e 348 (552)
-+|+|..+|.. ..+.+|+....+.+.+.-..-.++++|++++..|+.
T Consensus 6 rrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 6 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788877753 348899999999999999999999999999999885
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.94 E-value=43 Score=25.66 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=38.5
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 008831 302 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 348 (552)
Q Consensus 302 llE~~~n~~Lq------~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e 348 (552)
.+|+|.-+|.. ..+++|+......+.+.-..-.++.+|++++..|+.
T Consensus 5 r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 5 FLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888877764 238889988888888888888999999999988874
No 30
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=51.77 E-value=2.6e+02 Score=30.12 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=33.3
Q ss_pred hhhhhH--HHHHHhhhcchhHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 008831 8 KFFQGC--MAAAFAERDNSVMEAEKAKEKEEL----MSQKFNEFQTRLEELSSENIELK 60 (552)
Q Consensus 8 kFFQs~--VA~AFAERD~slmEaEKAKEkEE~----m~qkf~~f~~R~eE~~S~~~~qK 60 (552)
.|+++. ++.+|---|.+|.+.||+.+.|.+ +-++-..++++.++++..+..|+
T Consensus 463 ~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~ 521 (592)
T 1f5n_A 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE 521 (592)
T ss_dssp HHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366654 577888999999999988776655 33444444444444444444443
No 31
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.18 E-value=91 Score=35.62 Aligned_cols=12 Identities=8% Similarity=-0.103 Sum_probs=4.6
Q ss_pred hhHHHHHHhhhc
Q 008831 11 QGCMAAAFAERD 22 (552)
Q Consensus 11 Qs~VA~AFAERD 22 (552)
|..+-.-.+-|+
T Consensus 825 Q~~~r~~~~~k~ 836 (1184)
T 1i84_S 825 QYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 444433334343
No 32
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.54 E-value=69 Score=33.59 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHHHHHhHHHHHhhhhhh----HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHH
Q 008831 135 LEKTRSSVENLQSKLRMG----LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSIS 210 (552)
Q Consensus 135 le~lrasi~~LQskLRvG----LEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks~v 210 (552)
+++|++.|+.+|..=.-- -.|-+-|+++...-......+..+ ..+|+++|.+.+..|.+-|- .=..|.++|
T Consensus 69 Ie~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~----s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l 143 (390)
T 1deq_A 69 INKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQI----NEDLRSRIEILRRKVIEQVQ-RINLLQKNV 143 (390)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHH----HHHHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 355555555554443322 344444555554444444444443 56899999998888888777 444566666
Q ss_pred HHHHHhhhccc
Q 008831 211 DVIEEKTQHCD 221 (552)
Q Consensus 211 ~~ieekl~~~~ 221 (552)
..+--+|.+|.
T Consensus 144 ~~q~~kiqRLE 154 (390)
T 1deq_A 144 RDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHH
Confidence 66666777774
No 33
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=49.01 E-value=18 Score=29.52 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 83 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 83 VI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskL 149 (552)
+=+.|+.+|...|....++-..|-++|=. .-.||..|+++...+...++.|+.+.
T Consensus 16 lk~~f~~Lr~~vP~~~~~~k~sk~~iL~k------------A~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 16 LRLSLEKLKGLVPLGPDSSRHTTLSLLTK------------AKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHSSCCCSSSCCCTTHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999998886654432234333311 34899999999888877776665543
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.63 E-value=48 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHH
Q 008831 47 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 84 (552)
Q Consensus 47 ~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI 84 (552)
.++.+++......+..|..|+.++..+.++...+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666667778888888888888877666554
No 35
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=46.21 E-value=74 Score=30.94 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhcc
Q 008831 36 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET 100 (552)
Q Consensus 36 E~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~ 100 (552)
+..+++-..+.++++.++..+...|+-|. +|..+-+|.+-+..||+.+-.=...+++.+++
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~----eLkeLae~~q~la~vi~~l~~~~~~~~e~~~~ 171 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENK----ELAEVAEHVQYMAELIERLNGEPLDNFESLDN 171 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCcccccCchh
Confidence 34567778889999999888888888887 45678888888999999887766666666655
No 36
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.92 E-value=39 Score=26.43 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHH
Q 008831 48 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 85 (552)
Q Consensus 48 R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~ 85 (552)
|+.+++....+.+.-|+.|...+..++.++..++.+|-
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555566677777777777777776666553
No 37
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.24 E-value=62 Score=26.64 Aligned_cols=25 Identities=12% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 126 KYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLR 150 (552)
..|+..+.++..+++.+..|...+.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~ 88 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKS 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665543
No 38
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=44.54 E-value=1.5e+02 Score=26.58 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=41.6
Q ss_pred hhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHh
Q 008831 62 QNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSS 141 (552)
Q Consensus 62 lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lras 141 (552)
.+|-|+.+|+++.-.++...| .+++| .+..++.+|+|++.++.+
T Consensus 33 ~sDPL~~ELeRLr~~~d~~~K------------------~HE~k------------------klqLkse~e~E~ae~k~K 76 (115)
T 3vem_A 33 FNDPFLHELEKLRRESENSKK------------------TFEEK------------------KSILKAELERKMAEVQAE 76 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH------------------HHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH------------------HHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 567899999998877774443 33444 668889999999999999
Q ss_pred HHHHHhhhhhh
Q 008831 142 VENLQSKLRMG 152 (552)
Q Consensus 142 i~~LQskLRvG 152 (552)
-|-+=.++-+-
T Consensus 77 YD~~lqe~ese 87 (115)
T 3vem_A 77 FRRKFHEVEAE 87 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98877766554
No 39
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=44.39 E-value=88 Score=26.56 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHhhhHHHHHHhHHhHHHHHHHHHHHhhhh
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQN--------ATLRFDLEKQEELNESFKEVINKFYEIRQQS 94 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN--------~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~ 94 (552)
-+.+.+++|++|+..|.+.+.+.++.= .+.|.=...+..|.++|.-+..+...|-.+.
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V 74 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENV 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999998876541 1234455678888899998888888876654
No 40
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=44.34 E-value=11 Score=27.08 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 008831 128 ISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 128 IsALEeEle~lrasi~~LQskL 149 (552)
|+.|||++-.|.+-+.+||.++
T Consensus 1 isrlee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 4679999998888888877654
No 41
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=43.82 E-value=58 Score=24.91 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhHHHHHhhhhh---hHHH-HHHhHHhHHHHHHh
Q 008831 130 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKK 169 (552)
Q Consensus 130 ALEeEle~lrasi~~LQskLRv---GLEI-EnHLkk~vr~LEKk 169 (552)
.|||-++.|.++++.||.++.= .++- ...||.|+-.||++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999998742 2222 23488888888875
No 42
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=43.60 E-value=18 Score=31.63 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=26.3
Q ss_pred CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 008831 275 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 325 (552)
Q Consensus 275 d~S~alAQALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~QV 325 (552)
+.=..+|+-||+++..| ++|||=||..+..- ...|.+|...+.++
T Consensus 45 ~~L~e~~keLh~~I~~L-----EeEKYDlE~kv~kq-~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNL-----EAEKFDLQEKFKQQ-KYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHhh-hHHHHHHHHHHHHh
Confidence 34456666666666554 66777777666554 22466665555553
No 43
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=43.47 E-value=61 Score=29.25 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHhhhHHHHHHhHH
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNA----------TLRFDLEKQEELNE 78 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~----------aLQ~dl~~~~eq~e 78 (552)
..-+++++.++.+.+|++...+++..+. .+|.+|..-++..+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe 61 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLS 61 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567899999999999998888887665 26666666555555
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.04 E-value=53 Score=25.18 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHH
Q 008831 49 LEELSSENIELKKQNATLRFDLEKQEELNESFKEV 83 (552)
Q Consensus 49 ~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kV 83 (552)
+.+++.........|..|+.++..+.+++..++.+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555556777777777777777665544
No 45
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=42.62 E-value=49 Score=25.93 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=34.7
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 008831 162 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 200 (552)
Q Consensus 162 ~vr~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ 200 (552)
.+.+|+.+.+.+|..|.--|.+|+..|...|.=|...++
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 456788888999999999999999999999999887765
No 46
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.50 E-value=1.5e+02 Score=25.76 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHH
Q 008831 33 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 85 (552)
Q Consensus 33 EkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~ 85 (552)
|+=+.+...-.+++..+.++++.+.+....|..|+..-.+++.+...+.+=|+
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666788888888888888888888888888888888777766554
No 47
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=39.72 E-value=13 Score=32.39 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhhhhhcc-chhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH-hHH
Q 008831 84 INKFYEIRQQSLEVLET-SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH-LKK 161 (552)
Q Consensus 84 I~KFyeiR~~~~e~~~~-s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnH-Lkk 161 (552)
=++|.++|.-.|.|... .-.+|.++|-. +-.||..|+++...+......+ + -|+-.|. |+.
T Consensus 43 n~~~~~L~~lvP~~~~~~~k~~Ka~IL~~------------aieYIk~Lq~~~~~l~~~~~~~----~-~l~~~n~~L~~ 105 (118)
T 4ati_A 43 NDRIKELGTLIPKSNDPDMRWNKGTILKA------------SVDYIRKLQREQQRAKDLENRQ----K-KLEHANRHLLL 105 (118)
T ss_dssp HHHHHHHHHHSCCC----CCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHhhccCccccCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHH
Confidence 35788999888877532 33456666532 6789999999998886532221 1 1334443 677
Q ss_pred hHHHHHH
Q 008831 162 SVRELEK 168 (552)
Q Consensus 162 ~vr~LEK 168 (552)
++.+||.
T Consensus 106 riqeLE~ 112 (118)
T 4ati_A 106 RVQELEM 112 (118)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 7777776
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.68 E-value=96 Score=33.86 Aligned_cols=114 Identities=17% Similarity=0.324 Sum_probs=77.5
Q ss_pred hhccchhhhh--chhccccccccccCCcchHHHHHHHHHHHHHH-----------HHhHHHHHhhhhhhHHHHHHhHHhH
Q 008831 97 VLETSWEDKC--ACLLLDSAEMWSFNDTSTSKYISALEDELEKT-----------RSSVENLQSKLRMGLEIENHLKKSV 163 (552)
Q Consensus 97 ~~~~s~~eKc--s~LL~DS~e~WSfn~tStskyIsALEeEle~l-----------rasi~~LQskLRvGLEIEnHLkk~v 163 (552)
|.++.|-.|| .|-|-.-.+-+.-+ .-+.|.-|-.+++.+ ++..+.|+.++..--..+|....-.
T Consensus 36 CaDeDwGvkCPSGCrLQglLdkqErD---ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S 112 (562)
T 3ghg_A 36 CSDEDWNYKCPSGCRMKGLIDEVNQD---FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVS 112 (562)
T ss_dssp CCSSSBTTEEECHHHHHHHHHHHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCCCcccchhhhHHhhcCc---HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 4455777777 35444443333322 447788888888665 6777888888888778899777777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhccc
Q 008831 164 RELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCD 221 (552)
Q Consensus 164 r~LEKkqi~~dk~i~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~~~ 221 (552)
.+||+++++++.=|-|-|+-|+..-.-.|+.+.+| +..=.-|.-||+.|.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kI--------QRLEvDIdiqirsCK 162 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDM--------KRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcc
Confidence 79999999888888888777766655555555444 333345777887763
No 49
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.42 E-value=1.1e+02 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHh
Q 008831 31 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 79 (552)
Q Consensus 31 AKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~ 79 (552)
-..+.-.+-.++++++.|+++....+.+.-.-...|+.+...++++.+-
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778888888888888888888888888888888888877764
No 50
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.19 E-value=90 Score=24.15 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHH
Q 008831 46 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 87 (552)
Q Consensus 46 ~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KF 87 (552)
+.|+++++.++...-..|..|-.-|..-.+|...++..|+++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888899999999999999999888888875
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.55 E-value=2.6e+02 Score=26.36 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKK 169 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKk 169 (552)
+.+=..||+.|++.+...+..|...+.=-.+--..++..+..++.+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777777777766554443333344444444333
No 52
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=37.07 E-value=1.8e+02 Score=24.19 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=26.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 27 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 27 EaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
|++.|-++-+..-+++...+.|.......+...++-+..|+.++....++..
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555555555555455555555555544444
No 53
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.69 E-value=1.1e+02 Score=26.45 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=26.6
Q ss_pred hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Q 008831 20 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 70 (552)
Q Consensus 20 ERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl 70 (552)
|||..+=.|=++..-=+..-.+..++..++++.++.+.+..+.|..||++.
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 555444333333332333444555666666666666665556666666553
No 54
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=36.57 E-value=95 Score=30.95 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHH
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 178 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~ 178 (552)
..+|++.|+++++.+.+.+++++.+|.-.-.- .=.+++.+.|+++....++-|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRPEN-KKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999887321000 0134556666666655555444
No 55
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=36.48 E-value=81 Score=28.52 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=29.3
Q ss_pred CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHh
Q 008831 275 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRN 321 (552)
Q Consensus 275 d~S~alAQALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrN 321 (552)
+.=..+|+-||+++..| ++|||=||..|+.- ...|.+|...
T Consensus 61 ~~L~e~~keLh~~I~~L-----EeEKYDlE~kvkkq-~yEI~dL~~r 101 (133)
T 1j1d_C 61 AELQDLARQLHARVDKV-----DEERYDIEAKVTKN-ITEIADLTQK 101 (133)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHc-chHHHHHHHH
Confidence 55677888899988775 78999999888765 2235555443
No 56
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=34.46 E-value=2.7e+02 Score=25.46 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=15.2
Q ss_pred HHHHhhhcchhHHHHHhHHHHHHH
Q 008831 15 AAAFAERDNSVMEAEKAKEKEELM 38 (552)
Q Consensus 15 A~AFAERD~slmEaEKAKEkEE~m 38 (552)
-.+...||+.++..++++.+-+.+
T Consensus 147 ~~~ikKR~~k~lDyD~~~~~l~kl 170 (251)
T 2fic_A 147 KSRIAKRGRKLVDYDSARHHYESL 170 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356667777777777666654443
No 57
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=34.09 E-value=1.7e+02 Score=31.32 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=66.3
Q ss_pred hhhchhccccccccccCCc------chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 008831 104 DKCACLLLDSAEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 177 (552)
Q Consensus 104 eKcs~LL~DS~e~WSfn~t------StskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i 177 (552)
|-..|+..| .++-+|+-| -.+||-......|..|+..|+.+-|.=.--.+.-++||-..+.-||..--.|.++
T Consensus 61 d~g~c~~~~-~~fG~yCPTtCglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~ 139 (461)
T 3ghg_B 61 DAGGCLHAD-PDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVV 139 (461)
T ss_dssp CCCCCBCSS-TTTCBCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCccccC-cccCCcCCCcchHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHH
Confidence 334555554 356788822 3788888888888888888888888777778888888776666655443223333
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhcc
Q 008831 178 SNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHC 220 (552)
Q Consensus 178 ~Ngis~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~~ 220 (552)
..-=..|.+.|.....-+..-.+..=..|.++++.+..||..+
T Consensus 140 ~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l 182 (461)
T 3ghg_B 140 NEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKL 182 (461)
T ss_dssp SCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333333333333444444444444443
No 58
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=33.99 E-value=78 Score=32.60 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhchhcccccccc
Q 008831 38 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 117 (552)
Q Consensus 38 m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~W 117 (552)
|..++..+.+|.+|++..+.+-.=.+| +....++....-.+..+++.|-+++...-+.- ...+ |+.|+
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d--~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~--~~~e----l~~D~---- 68 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKD--KGRYQSLSRRYAEMGEVIGLIREYRKVLEDLE--QAES----LLDDP---- 68 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHT----STTCH----
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH----HhcCH----
Confidence 456777888888888776543221111 11122222222334456666665554221111 1100 11122
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 008831 118 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 152 (552)
Q Consensus 118 Sfn~tStskyIsALEeEle~lrasi~~LQskLRvG 152 (552)
...+-.++|+..+...++.|..+|+.-
T Consensus 69 --------e~~~~a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 69 --------ELKEMAKAEREALLARKEALEKELERH 95 (354)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667889999999999998887763
No 59
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.73 E-value=44 Score=27.70 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHH
Q 008831 315 IEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEK 349 (552)
Q Consensus 315 ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~ 349 (552)
|++|++.|.+.|.+|.++..|+-.++.+..-++.|
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~K 36 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 36 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
No 60
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=33.31 E-value=2.7e+02 Score=25.55 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhchHHHH----HHHHH--hhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHH
Q 008831 282 QALQEKVAALLLLSQQEER----HLLER--NVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQL 345 (552)
Q Consensus 282 QALqEKv~ALlLlSQqeER----~llE~--~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~l 345 (552)
..+|.|++|=-=--+.+|- +|-|+ ....+||+.+|+ +.|.+..|.||+..=||..+-+.++++
T Consensus 46 eEIqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~Ee-n~~F~k~aeEkL~~KME~~kEnReA~l 114 (143)
T 3ryc_E 46 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEE-NNNFIKMAKEKLAQKMESNKENREAHL 114 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4588999886221111111 22222 334567777766 777888899999999999877777665
No 61
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.61 E-value=46 Score=25.64 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHH
Q 008831 47 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 83 (552)
Q Consensus 47 ~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kV 83 (552)
.++.+++.........|..|+.++..+.+++..++..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556667777777777777777655443
No 62
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=32.37 E-value=2.2e+02 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMG 152 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvG 152 (552)
...||..|+..++..+..|..++..+.-.
T Consensus 72 ~~~fi~~L~~~I~~q~~~l~~~~~~~e~~ 100 (150)
T 3ajw_A 72 YQQFIQTLEKAIEQHRLQLTQWTQKVDLA 100 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888877776654
No 63
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.08 E-value=89 Score=26.07 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhHHHHHhhhhh---hHHH-HHHhHHhHHHHHHhhh
Q 008831 130 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKKII 171 (552)
Q Consensus 130 ALEeEle~lrasi~~LQskLRv---GLEI-EnHLkk~vr~LEKkqi 171 (552)
.||+-++.|.++++.||.|+.= .++- .+.||.|+-.||++-.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999998742 2222 2237888888887654
No 64
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.72 E-value=2.2e+02 Score=24.65 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 125 SKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 125 skyIsALEeEle~lrasi~~LQskLRv 151 (552)
+-...+.++++++|++.++.|..++|.
T Consensus 67 ~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 67 SVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344678888888888888777764
No 65
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=31.56 E-value=62 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh-------------hHHHHHHh
Q 008831 125 SKYISALEDELEKTRSSVENLQSKLRM-------------GLEIENHL 159 (552)
Q Consensus 125 skyIsALEeEle~lrasi~~LQskLRv-------------GLEIEnHL 159 (552)
-+-|++|.++|..-...|..|+--+.+ ++-|||.|
T Consensus 17 ~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNl 64 (75)
T 3a7o_A 17 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNV 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHH
Confidence 357899999998888899988887776 57788764
No 66
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.02 E-value=61 Score=24.96 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHhhhHHHH------HHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHH
Q 008831 304 ERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 348 (552)
Q Consensus 304 E~~~n~~Lq------~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e 348 (552)
++|.-+|-. ..|++|+....+.+.+.-..-.++.+|+++...|+.
T Consensus 7 ~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 7 MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555532 358899999999999999999999999999888763
No 67
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.94 E-value=83 Score=27.17 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHH
Q 008831 305 RNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEK 349 (552)
Q Consensus 305 ~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~ 349 (552)
++.-...+..|++|++.|..++.||.++..|+..++.+..-++.|
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K 56 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 68
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.89 E-value=46 Score=25.41 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 127 YISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskLRv 151 (552)
-++|||-|+..|..+++-|.+||..
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.89 E-value=3.4e+02 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 126 KYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLRv 151 (552)
+-|..+|.+++.+++.+++.+.+|--
T Consensus 60 ~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 60 LQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556666666666666666666544
No 70
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=30.83 E-value=13 Score=27.77 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.4
Q ss_pred ccccccceeeccCC
Q 008831 239 DEFECRDVHINNDA 252 (552)
Q Consensus 239 ~e~ecrDVHvs~d~ 252 (552)
|+++|+|+|+-+..
T Consensus 21 c~n~c~~~~~qn~t 34 (40)
T 3ssb_C 21 CDNVCADLHIQNKT 34 (40)
T ss_dssp CCCBGGGTTTCCSS
T ss_pred Hhhhhhhhhccccc
Confidence 89999999998764
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.30 E-value=1.3e+02 Score=27.18 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=33.6
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHh
Q 008831 302 LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKI 350 (552)
Q Consensus 302 llE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~~ 350 (552)
-|++.+-++ |++++|||-.|-..+-.==++.+|+-+|+-+.+-|.-++
T Consensus 61 SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 61 SLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 355555555 666777777776654444568899999999988877555
No 72
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.94 E-value=3.4e+02 Score=28.25 Aligned_cols=26 Identities=4% Similarity=0.181 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 125 SKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 125 skyIsALEeEle~lrasi~~LQskLR 150 (552)
.++++.+.+|+.++.+.+..-...++
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~ 108 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQ 108 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 46777788888887776665555544
No 73
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.68 E-value=1.5e+02 Score=26.40 Aligned_cols=50 Identities=14% Similarity=0.313 Sum_probs=37.4
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHhh
Q 008831 302 LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKIC 351 (552)
Q Consensus 302 llE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkqey~lL~e~~~ 351 (552)
+-.+..+..|+..++++.+.+.-.+.|=+++-|++..++++...|+++..
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566677788888888888888888888888877777777776543
No 74
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.97 E-value=58 Score=23.76 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhHHHhhhH
Q 008831 49 LEELSSENIELKKQNATLRFDL 70 (552)
Q Consensus 49 ~eE~~S~~~~qK~lN~aLQ~dl 70 (552)
.-..+.+++++|++|..|....
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 3456778888888888776554
No 75
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.89 E-value=1.6e+02 Score=24.30 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=14.2
Q ss_pred hhHHHhhhHHHHHHhHHhHHHHHHHH
Q 008831 62 QNATLRFDLEKQEELNESFKEVINKF 87 (552)
Q Consensus 62 lN~aLQ~dl~~~~eq~e~~~kVI~KF 87 (552)
.-..|+..|....+....+...++||
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555666666
No 76
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=27.61 E-value=29 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHh
Q 008831 123 STSKYISALEDELEKTRSSVENLQS 147 (552)
Q Consensus 123 StskyIsALEeEle~lrasi~~LQs 147 (552)
....||+.||++++.|...|..|++
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999998887654
No 77
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.55 E-value=2.7e+02 Score=23.17 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008831 30 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNA 64 (552)
Q Consensus 30 KAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~ 64 (552)
+.|.|=.+|-....+...|++.++.++.....-+.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~ 40 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCK 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888889999988887766654444
No 78
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.43 E-value=30 Score=24.03 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 008831 128 ISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 128 IsALEeEle~lrasi~~LQskL 149 (552)
|.|||=|.+.|..+|+-|.+|+
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 4677888888877777777665
No 79
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=27.14 E-value=1.1e+02 Score=28.93 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=31.8
Q ss_pred CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 008831 275 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 324 (552)
Q Consensus 275 d~S~alAQALqEKv~ALlLlSQqeER~llE~~~n~~Lq~~ieeLQrNl~Q 324 (552)
+.=..+|+-||+++..| ++|||=||..|..-- ..|.+|...+..
T Consensus 61 ~~L~e~ckELh~~I~~L-----EeEKYDlE~kvkkqd-yEI~dL~~rV~D 104 (180)
T 1j1e_C 61 AELQDLARQLHARVDKV-----DEERYDIEAKVTKNI-TEIADLTQKIFD 104 (180)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHhcc-hhHHHHHHHHHH
Confidence 55678899999998775 899999999887652 236666544433
No 80
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.80 E-value=1.1e+02 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
.+.+++.++.+++........-|..|...+..+...+.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444445555555555544443
No 81
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.48 E-value=2.9e+02 Score=23.19 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 27 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 27 EaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
|++.|.++-+..-+++...+.|.......+....+-+..|+.|+....++..
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555554444444444444555555444444
No 82
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.29 E-value=1.5e+02 Score=22.61 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 126 KYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 126 kyIsALEeEle~lrasi~~LQskLR 150 (552)
.|++.||.....+....+.|.+++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999988888877777766543
No 83
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=26.04 E-value=85 Score=22.23 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskL 149 (552)
....+++||-|...|+++++.|-.|+
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688999999999999999886553
No 84
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.85 E-value=2.1e+02 Score=25.51 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 75 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~e 75 (552)
++...+.+++++...+.+.++-+.+||....+++.
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555543
No 85
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.66 E-value=3.3e+02 Score=23.67 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=19.6
Q ss_pred CcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 121 DTSTSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 121 ~tStskyIsALEeEle~lrasi~~LQskL 149 (552)
..+....++-|+..++.++..+++|+..+
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l 121 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGAL 121 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777766666554
No 86
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=25.52 E-value=3.8e+02 Score=25.29 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008831 17 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIEL 59 (552)
Q Consensus 17 AFAERD~slmEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~q 59 (552)
++|.|=+.|++ .|..+...+|-++-.++.++...+.+.
T Consensus 19 ~~a~rG~~LLk-----~Krd~L~~ef~~i~~~~~~~r~~~~~~ 56 (223)
T 3a5c_G 19 RLAQKGVDLLK-----KKRDALVAEFFGLVREAMEARKALDQA 56 (223)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899998 888999999999999999887776553
No 87
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.26 E-value=6.3e+02 Score=26.78 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=5.5
Q ss_pred ccccceeec
Q 008831 241 FECRDVHIN 249 (552)
Q Consensus 241 ~ecrDVHvs 249 (552)
..|.|+...
T Consensus 214 ~dC~di~~~ 222 (464)
T 1m1j_B 214 RECEDIYRK 222 (464)
T ss_dssp SSHHHHHHT
T ss_pred CCHHHHHhc
Confidence 367777543
No 88
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.31 E-value=1.7e+02 Score=25.80 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhcchh----HHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh-------hHHHhhhHHHHHHhHHhHHHHH
Q 008831 20 ERDNSV----MEAEKAKEKEELMSQK----FNEFQTRLEELSSENIELKKQ-------NATLRFDLEKQEELNESFKEVI 84 (552)
Q Consensus 20 ERD~sl----mEaEKAKEkEE~m~qk----f~~f~~R~eE~~S~~~~qK~l-------N~aLQ~dl~~~~eq~e~~~kVI 84 (552)
+||.-| .|++..|-.=+.+..+ +.++..|+-+|+.++..++.+ |..|.++++.+..+...-.++.
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q 91 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQ 91 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHhhh
Q 008831 85 NKFYEIRQQ 93 (552)
Q Consensus 85 ~KFyeiR~~ 93 (552)
-++-++..+
T Consensus 92 ~~~~e~E~k 100 (120)
T 3i00_A 92 RSLSEIERK 100 (120)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 89
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.86 E-value=3.2e+02 Score=22.90 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHH
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 86 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~K 86 (552)
..+++=..++++++.++..|...|+-|..| ..+-++++-+..||..
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L----~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 356677788999999999988888888744 6677778888888864
No 90
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.70 E-value=6.4e+02 Score=26.38 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHh-------------------HHhHHHHHHhhhhhHHHH---HHHH
Q 008831 124 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHL-------------------KKSVRELEKKIIHSDKFI---SNAI 181 (552)
Q Consensus 124 tskyIsALEeEle~lrasi~~LQskLRvGLEIEnHL-------------------kk~vr~LEKkqi~~dk~i---~Ngi 181 (552)
.+||-......|..|+..|+.+-|.=.--.+.-++| ++.-..||++..+ +..| .+-|
T Consensus 29 L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~-~~~~~~~~~~i 107 (411)
T 3ghg_C 29 LSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKY-EASILTHDSSI 107 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHH-HHHHHhhHHHH
Confidence 567766666666666666666655444444444444 2223345555433 4444 4556
Q ss_pred HHHHHhhhhhHHHHHHhhhhcchhhhhHHHHHHHhhhc
Q 008831 182 AELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQH 219 (552)
Q Consensus 182 s~Lq~~h~~~R~~Im~lL~ee~s~iks~v~~ieekl~~ 219 (552)
..||.-....+..| ..|+..|..++.+..+
T Consensus 108 ~~l~~~~~~~~~~i--------~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 108 RYLQEIYNSNNQKI--------VNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 66666554444433 4445555555555544
No 91
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.69 E-value=4.3e+02 Score=24.25 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008831 28 AEKAKEKEELMSQKFNEFQTRLEELS 53 (552)
Q Consensus 28 aEKAKEkEE~m~qkf~~f~~R~eE~~ 53 (552)
.|+|-|+-+..-.++.+++.-+.-..
T Consensus 30 LEraEERae~aE~k~~eLEeeL~~v~ 55 (155)
T 2efr_A 30 LERAEERAELSEGKSAELEEELKTVT 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665554433
No 92
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.22 E-value=2e+02 Score=24.78 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhHHHhhhHHHHHHhHH
Q 008831 50 EELSSENIELKKQNATLRFDLEKQEELNE 78 (552)
Q Consensus 50 eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e 78 (552)
+|+...-...++.|+.||-....+..|-+
T Consensus 9 eElr~Fa~~L~~F~d~Lq~~~~~L~~~f~ 37 (94)
T 3fx7_A 9 EEVREFVGHLERFKELLREEVNSLSNHFH 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666778888888888777765554
No 93
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.89 E-value=4.9e+02 Score=24.64 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008831 31 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNA 64 (552)
Q Consensus 31 AKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~ 64 (552)
-+|-|..|=+.+...++|...+++.+...+.-.+
T Consensus 40 SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e 73 (189)
T 2v71_A 40 SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVE 73 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888888777666554443333
No 94
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.59 E-value=1.6e+02 Score=24.77 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHH
Q 008831 43 NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 84 (552)
Q Consensus 43 ~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI 84 (552)
.+++.|+++|+. -|..|+..+..++.++..+..++
T Consensus 39 ~e~~~r~~~Le~-------EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 39 LETQHKVLELTA-------ENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666644 46666666666666666555443
No 95
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.52 E-value=1.7e+02 Score=24.69 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008831 29 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 67 (552)
Q Consensus 29 EKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ 67 (552)
+|+|.++..+-+++.+++.-=..|...+..++.....|.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888887777776666666555444444443
No 96
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=21.81 E-value=3.9e+02 Score=26.37 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=0.0
Q ss_pred ccCCCCc---cccCCCCCccchhhhcccCCchHHHHHHHHHHHHHHHhhchHHHHHHHHH-----------hhhHHHHHH
Q 008831 249 NNDADTN---LVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLER-----------NVNSALQKK 314 (552)
Q Consensus 249 s~d~~p~---~~~k~~~ps~~~~~~d~~~d~S~alAQALqEKv~ALlLlSQqeER~llE~-----------~~n~~Lq~~ 314 (552)
+++.+|. +.|+.-.||+-. +|.|++|= ++=|-.+|. ....+||+.
T Consensus 25 s~~~~~~~~~s~P~kk~~SleE----------------IqkKLeAA-----EERRks~Ea~~lk~laekrEhe~evlqKa 83 (240)
T 4f61_I 25 SFDGVPEFNASLPRRRDPSLEE----------------IQKKLEAA-----EERRKYQEAELLKHLAEKREHEREVIQRA 83 (240)
T ss_dssp SSCSSCCCC------CCCCHHH----------------HHHHHHHH-----HHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHH----------------HHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHhHHHHHHH
Q 008831 315 IEELQRNLFQVTTEKVKALMELAQLKQDYQL 345 (552)
Q Consensus 315 ieeLQrNl~QVt~EKVkaLmELAqLkqey~l 345 (552)
+|+ ..|.+-.|.||+..=||..+-+.++++
T Consensus 84 ~Ee-n~~F~k~aeEkL~~KME~~kEnReA~l 113 (240)
T 4f61_I 84 IEE-NNNWIKMAKEKLAQKMESNKENREAHF 113 (240)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhHHHHH
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.69 E-value=1.2e+02 Score=30.40 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=16.0
Q ss_pred HHHhhHHHhhhHHHHHHhHHhHHHHHHHH
Q 008831 59 LKKQNATLRFDLEKQEELNESFKEVINKF 87 (552)
Q Consensus 59 qK~lN~aLQ~dl~~~~eq~e~~~kVI~KF 87 (552)
.++.-...|.+...+++.++...++|.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 33445555555555666666666655543
No 98
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.95 E-value=1.6e+02 Score=24.22 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHH
Q 008831 41 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 81 (552)
Q Consensus 41 kf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~ 81 (552)
+..+++.|+.+|+.. |..|+..+..++.++..+.
T Consensus 37 r~~e~~~r~~~L~~e-------N~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 37 RNLETQHKVLELTAE-------NERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344556677777555 5555555555555554443
No 99
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.84 E-value=4.1e+02 Score=25.19 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHH
Q 008831 37 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 82 (552)
Q Consensus 37 ~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~k 82 (552)
++.+-|.-.-.-+.+++..+......|..|+.+..++.+|.|-|.+
T Consensus 122 ~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 122 VIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445566666666677788888888888888885554
No 100
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.60 E-value=3.7e+02 Score=22.40 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhh
Q 008831 42 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQ 93 (552)
Q Consensus 42 f~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~ 93 (552)
=.+++.|++.++.++.+-+.--..++.++..+.++.+ .=|...-++|+.
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld---~KI~eL~elRqg 70 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD---VSLFELSELREG 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHH
Confidence 3456666666666666656556667777777766665 556666666663
No 101
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.35 E-value=1e+02 Score=26.14 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 008831 122 TSTSKYISALEDELEKTRSSVENLQSKLR 150 (552)
Q Consensus 122 tStskyIsALEeEle~lrasi~~LQskLR 150 (552)
++...=|++|+++...|.+.+..+..+|+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667789999999999999999988887
Done!