Query 008831
Match_columns 552
No_of_seqs 17 out of 19
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 12:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008831.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008831hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 70.5 5.2 0.00038 30.5 6.5 55 83-149 21-75 (88)
2 d1am9a_ a.38.1.1 (A:) SREBP-1a 59.0 5.6 0.00041 30.1 4.6 51 85-149 23-73 (80)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 57.5 6.8 0.0005 28.4 4.7 51 85-149 6-56 (61)
4 d1nlwa_ a.38.1.1 (A:) Mad prot 48.1 9.7 0.00071 28.4 4.3 52 85-148 18-69 (79)
5 d1nkpb_ a.38.1.1 (B:) Max prot 38.6 24 0.0018 26.3 5.3 52 83-147 17-68 (83)
6 d1vcsa1 a.47.2.1 (A:8-96) Vesi 28.2 1E+02 0.0075 23.6 7.6 43 19-61 27-81 (89)
7 d2jn6a1 a.4.1.19 (A:1-89) Unch 23.1 9.6 0.0007 28.8 0.4 46 382-433 36-81 (89)
8 d1lrza1 a.2.7.4 (A:245-309) Me 20.8 42 0.0031 25.1 3.7 27 125-151 2-28 (65)
9 d1gqea_ e.38.1.1 (A:) Polypept 20.0 1.7E+02 0.012 27.3 8.8 23 127-149 92-114 (362)
10 d1pjqa3 e.37.1.1 (A:114-215) S 16.0 34 0.0025 26.6 2.2 41 270-310 12-52 (102)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.50 E-value=5.2 Score=30.53 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 83 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 83 VI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskL 149 (552)
+=+.|.++|.-.|.+..+.=..|.++|-. +.+||..|++++..+...++.|+.+.
T Consensus 21 in~~f~~Lr~llP~~~~~~k~sK~~iL~~------------A~~yI~~L~~~~~~l~~~~~~l~~~~ 75 (88)
T d1nkpa_ 21 LKRSFFALRDQIPELENNEKAPKVVILKK------------ATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCccCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33578888887776554433457666642 67999999999998888777776544
No 2
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.01 E-value=5.6 Score=30.06 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 85 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 85 ~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskL 149 (552)
+.|.++|.-.|.+. .-.+|+++|-. +-.||..|+++++.|......|+..+
T Consensus 23 ~~~~~L~~llP~~~--~k~~K~~iL~~------------a~~yI~~L~~~~~~L~~e~~~lk~~~ 73 (80)
T d1am9a_ 23 DKIIELKDLVVGTE--AKLNKSAVLRK------------AIDYIRFLQHSNQKLKQENLSLRTAV 73 (80)
T ss_dssp HHHHHHHHHHTCSS--CCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC--CCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777776544322 33457776632 66899999999999988888876554
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.54 E-value=6.8 Score=28.42 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=36.2
Q ss_pred HHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008831 85 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 85 ~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskL 149 (552)
++|-.+|.-.|-+. +=.+|+++|=. +-.||..|+.+...|......|+...
T Consensus 6 ~~f~~L~~lvP~~~--~K~~Ka~iL~~------------Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 6 DKIIELKDLVMGTD--AKMHKSGVLRK------------AIDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHSCSS--CCCCTTTHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCC--CcccHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778877665332 23456666632 55899999999999998888877643
No 4
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.14 E-value=9.7 Score=28.38 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=36.3
Q ss_pred HHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 008831 85 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 148 (552)
Q Consensus 85 ~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQsk 148 (552)
..|.++|.-.|.+....=..|.++|-. +-.||..|++++..+...++.|+.+
T Consensus 18 ~~f~~L~~llP~~~~~~k~sK~~iL~~------------A~~yI~~L~~~~~~l~~~~~~L~~~ 69 (79)
T d1nlwa_ 18 LSLEKLKGLVPLGPDSSRHTTLSLLTK------------AKLHIKKLEDSDRKAVHQIDQLQRE 69 (79)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCCCCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778877765544433456666632 5689999999998888877777654
No 5
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.55 E-value=24 Score=26.30 Aligned_cols=52 Identities=12% Similarity=0.257 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 008831 83 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 147 (552)
Q Consensus 83 VI~KFyeiR~~~~e~~~~s~~eKcs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQs 147 (552)
+=+.|.++|.--|.+... -..|.++|-. +..||.-|++++..+...+..|+.
T Consensus 17 in~~f~~L~~llP~~~~~-k~sK~~iL~~------------A~~yI~~L~~~~~~l~~~~~~l~~ 68 (83)
T d1nkpb_ 17 IKDSFHSLRDSVPSLQGE-KASRAQILDK------------ATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHTTSGGGTTS-CCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCC-CCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888877644332 2356666633 678999988888777766665544
No 6
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.17 E-value=1e+02 Score=23.61 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=34.2
Q ss_pred hhhcchhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 008831 19 AERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELKK 61 (552)
Q Consensus 19 AERD~slmEaEKAKEkEE~m~qkf------------~~f~~R~eE~~S~~~~qK~ 61 (552)
.+|...|-++|+.-+--+.++++. +.++.|++.|.+++...|+
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~ 81 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 81 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999888777777765 4788899999888776653
No 7
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=23.11 E-value=9.6 Score=28.78 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=26.8
Q ss_pred hhhhHhhhhccCCCCCCcCcCCCccccCccccccCccchhhhhhchhhHHHH
Q 008831 382 KKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKES 433 (552)
Q Consensus 382 krtyLr~Wi~~~d~sG~~~~~~~~s~~~~~~~~~~s~D~ARmKvENAtLkEs 433 (552)
..+.|++|++.-..-|..... . ........-.+++|+-||+-|+.-
T Consensus 36 s~~tl~~W~k~~~~~~~~~~~---~---~~~~~~~~~ei~~L~~En~~Lk~~ 81 (89)
T d2jn6a1 36 NRVTLKNWIIKYGSNHNVQGT---T---PSAAVSEAEQIRQLKKENALQRAR 81 (89)
T ss_dssp CHHHHHHHHHHHCCCSTTCSC---C---CCHHHHTHHHHHHHHHCGGGGGGT
T ss_pred CHHHHHHHHHHHhhcccccCC---C---CCcchhHHHHHHHHHHHHHHHHHH
Confidence 456689999876533331110 0 111122345689999999988763
No 8
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=20.77 E-value=42 Score=25.11 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 008831 125 SKYISALEDELEKTRSSVENLQSKLRM 151 (552)
Q Consensus 125 skyIsALEeEle~lrasi~~LQskLRv 151 (552)
..||.-|+.+.+.|.++|+++...|.-
T Consensus 2 ~eYl~~L~~~~~~L~~~i~k~~~~lek 28 (65)
T d1lrza1 2 DEYIKELNEERDILNKDLNKALKDIEK 28 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999887765
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=19.99 E-value=1.7e+02 Score=27.35 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhh
Q 008831 127 YISALEDELEKTRSSVENLQSKL 149 (552)
Q Consensus 127 yIsALEeEle~lrasi~~LQskL 149 (552)
.+.-++.+++.+...++.|+-.+
T Consensus 92 l~~e~~~~l~~l~~~l~~le~~l 114 (362)
T d1gqea_ 92 TFNEAVAELDALEEKLAQLEFRR 114 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhhhhhHHHHhh
Confidence 45556666777777777666443
No 10
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=16.02 E-value=34 Score=26.64 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=26.7
Q ss_pred hcccCCchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHH
Q 008831 270 ADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSA 310 (552)
Q Consensus 270 ~d~~~d~S~alAQALqEKv~ALlLlSQqeER~llE~~~n~~ 310 (552)
+=+|++.|-+||..|.+++++++==+=.+---++-+.++.+
T Consensus 12 AISTgG~sP~lar~lR~~lE~~lp~~~~~l~~~~~~~R~~v 52 (102)
T d1pjqa3 12 AVSSGGTSPVLARLLREKLESLLPQHLGQVARYAGQLRARV 52 (102)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHH
T ss_pred EEeCCCcChHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Confidence 34588999999999999999875322222223344444444
Done!