BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008833
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 300 MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH 359
++ I YP + + D+ L +L I++FY++YL L+ + ++ + H
Sbjct: 17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSH 75
Query: 360 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWS 413
F+++FY L ++ D + + RR W + +NIF K Y+ +P++E HW
Sbjct: 76 IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWY 135
Query: 414 LVIICIP 420
L +IC P
Sbjct: 136 LAVICFP 142
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 20/106 (18%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
+ I DI L +L ++NFY+ L + Q P H F+T+FY KLK
Sbjct: 38 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 91
Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
GG + +RW KGVN+F++ +L+PIH VHWSLV+I
Sbjct: 92 -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI 127
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 20/106 (18%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
+ I DI L +L ++NFY+ L + Q P H F+T+FY KLK
Sbjct: 32 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 85
Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
GG + +RW KGVN+F++ +L+PIH VHWSLV+I
Sbjct: 86 -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI 121
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 44 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 99
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ +RW K V++F +L+PIH VHW L ++
Sbjct: 100 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 133
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 36 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 91
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ +RW K V++F +L+PIH VHW L ++
Sbjct: 92 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 125
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ +RW K V++F +L+PIH VHW L ++
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 121
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ +RW K V++F +L+PIH VHW L ++
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 121
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ +RW K V++F +L+PIH VHW L ++
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 121
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L + + H FNT+F++KLK A
Sbjct: 11 LTITRKDIQTLNHLNWLNDEIINFYMN--MLMERSKEKGLPSVHAFNTFFFTKLKTAG-- 66
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ +RW K V++F +L+PIH VHW L ++
Sbjct: 67 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 100
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAV 373
+++EI D LAP +L I+ F+++Y++ +++P A FN++FY+ L E
Sbjct: 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIE-KSTPNTVA------FNSFFYTNLSER- 82
Query: 374 SHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIH-EDVHWSLVIICIPDKEDESGPII 430
++G RRW K I + + PI+ HW+L II + K I
Sbjct: 83 GYQG---------VRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKT------I 127
Query: 431 LHLDSLK---LHCSLSIFSNIRSFLKEE 455
++DSL S +I ++++ ++ EE
Sbjct: 128 GYVDSLSNGPNAMSFAILTDLQKYVMEE 155
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAV 373
+++EI D LAP +L I+ F+++Y++ +++P A FN++FY+ L E
Sbjct: 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIE-KSTPNTVA------FNSFFYTNLSER- 82
Query: 374 SHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIH-EDVHWSLVIICIPDKEDESGPII 430
++G RRW K I + + PI+ HW+L II + K I
Sbjct: 83 GYQG---------VRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKT------I 127
Query: 431 LHLDSLK---LHCSLSIFSNIRSFLKEE 455
++DSL S +I ++++ ++ EE
Sbjct: 128 GYVDSLSNGPNAMSFAILTDLQKYVMEE 155
>pdb|3MT0|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Pa17 Pseudomonas Aeruginosa Pao1
Length = 290
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 32 LIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGK 91
LI+K+ P P +K++ DD +L R P L + AR P G
Sbjct: 92 LIIKQHFPDNPLKKAILTPDD----WKLLRFAPCPVLXTKTAR------------PWTGG 135
Query: 92 KILATVTRLEKECERRRL-AGAVPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQS 145
KILA V + E R L AG + DI G K T S PSP + S
Sbjct: 136 KILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVIS-----AHPSPXLSS 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,675,792
Number of Sequences: 62578
Number of extensions: 712011
Number of successful extensions: 1291
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1272
Number of HSP's gapped (non-prelim): 14
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)