BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008833
(552 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana
GN=ULP1D PE=1 SV=1
Length = 584
Score = 351 bits (901), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 228/593 (38%), Positives = 320/593 (53%), Gaps = 96/593 (16%)
Query: 10 KRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELG 69
K+ IDW + + D+VP EL + + PTP SDD +L + D++L
Sbjct: 16 KKDFVIDWSSAM-DKEDEVP-ELEIVNTTKPTPPPPPTFFSDDQTDSPKL---LTDRDLD 70
Query: 70 VRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGA----------------- 112
++ R K + + LPDKG+KI + LE+E +RR L G+
Sbjct: 71 EQLERKKAILT-LGPGLPDKGEKIRLKIADLEEEKQRRVLEGSKMEVDRSSKVVSSTSSG 129
Query: 113 ---VPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAF 169
+P + + S D Q + S+S+F++VF + D + AF
Sbjct: 130 SDVLPQGNAVSKDTSRGNADSKDTSRQGNADSKEVSRSTFSAVFSKP---KTDSQSKKAF 186
Query: 170 DKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKW--------------PFHKGDKSFN 215
KEL L C+RRK ++ GR+ V S W F G K
Sbjct: 187 GKELEDLG-CERRKHKA-------GRKPVTRLSNGWRLLPDVGKAEHSAKQFDSGLKESK 238
Query: 216 SNGSQKDRASLTCPSHQSG---------------ENSSSCLPKKKESFEVLPSKNPRLRK 260
N K+ P S ++S ++ S+E PS++ R RK
Sbjct: 239 GNKKSKEPYGKKRPMESSTYSLIDDDDDDDDDDDNDTSGHETPREWSWEKSPSQSSRRRK 298
Query: 261 EQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICY 320
+ +++ DE EE++ S EQA E E + + I YP+R DP V++C
Sbjct: 299 KSEDTVINVDE-------EEAQPST---VAEQAAELPEGLQE-DICYPTRDDPHFVQVCL 347
Query: 321 TDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDK 380
D+ LAP YLTSP+MNFY+R+LQ Q S +N+ DCHFFNTYFY KL +AV++KG DK
Sbjct: 348 KDLECLAPREYLTSPVMNFYMRFLQQQISSSNQISADCHFFNTYFYKKLSDAVTYKGNDK 407
Query: 381 DSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHC 440
D+FF++FRRWWKG+++F+K+Y+ IPIHED+HWSLVI+CIPDK+DESG ILHLDSL LH
Sbjct: 408 DAFFVRFRRWWKGIDLFRKAYIFIPIHEDLHWSLVIVCIPDKKDESGLTILHLDSLGLHS 467
Query: 441 SLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRI-------------- 486
SI N++ FLK+EWNYL Q+ DLPI+E++W++LPRRI + +
Sbjct: 468 RKSIVENVKRFLKDEWNYLNQDDYSLDLPISEKVWKNLPRRISEAVVQVPQQKNDFDCGP 527
Query: 487 -----IPRFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQIS 534
I RF+EEAP+RLK+KDL MF K+WFRP+EAS LRIKIRN L + F++S
Sbjct: 528 FVLFFIKRFIEEAPQRLKRKDLGMFDKKWFRPDEASALRIKIRNTLIELFRVS 580
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana
GN=ULP1C PE=1 SV=1
Length = 571
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 212/595 (35%), Positives = 298/595 (50%), Gaps = 115/595 (19%)
Query: 10 KRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELD---RQIPDQ 66
K LNIDW++ L +++VP I+ A +P + SG E R + D
Sbjct: 14 KTMLNIDWDDALG--DEEVPELEII--------ATDKIPPREPTLSGYEPAVSVRSLRDN 63
Query: 67 ELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLT 126
EL + R + +++ L DKG+KI + LE E +RR + +GC L
Sbjct: 64 ELDDHLKRQRSLLTRLGDKLADKGEKIRNRIGELEYEKQRRMFQQRTKMQDADNGCQILE 123
Query: 127 QSPSSDCFT-----------QRTPSPQIQSKSSFTSVFREKM------------------ 157
+ SSD F Q T + S+S+F + F + +
Sbjct: 124 KPKSSDVFMRASTASKDTSGQGTSGSKDVSRSTFAAHFSDNLKMGPQPVKLVNDKLQDLG 183
Query: 158 ------EENRD-CREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKG 210
+ NRD E N + L L+ C + +N S S+ KG
Sbjct: 184 RGSWISKANRDSIIEKNNVWRSLPRLSKC------------KVSLKNFYSESKD---PKG 228
Query: 211 DKSFN-SNGSQKDRAS----LTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQN-- 263
D+ N + G K S L + + S + P ++ RK+ +
Sbjct: 229 DRRPNEAYGKGKPNESSPYLLVDDDDGDDDKVIGYETPRHWSLKASPLQSSSCRKKSDDK 288
Query: 264 LVLLDEDE--SP--VEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPES---V 316
++ LDEDE SP VE+A E EG + IYYPS + V
Sbjct: 289 VINLDEDEPLSPMVVEEACELPEG-----------------LPEDIYYPSSDQSDGRDLV 331
Query: 317 EICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHK 376
++ D+ L+P YLTSP++NFYIRY+Q ++ +CHFFNT+FY KL EAVS+K
Sbjct: 332 QVSLKDLKCLSPGEYLTSPVINFYIRYVQHHVFSADKTAANCHFFNTFFYKKLTEAVSYK 391
Query: 377 GGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSL 436
G D+D++F+KFRRWWKG ++F KSY+ IPIHED+HWSLVIICIPDKEDESG I+HLDSL
Sbjct: 392 GNDRDAYFVKFRRWWKGFDLFCKSYIFIPIHEDLHWSLVIICIPDKEDESGLTIIHLDSL 451
Query: 437 KLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDR----------- 485
LH IF+N++ FL+EEWNYL Q+ +P DLPI+ ++W+ LP I++
Sbjct: 452 GLHPRNLIFNNVKRFLREEWNYLNQD-APLDLPISAKVWRDLPNMINEAEVQVPQQKNDF 510
Query: 486 --------IIPRFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQ 532
I RF+EEAP+RL +DL M K+WF+PEEAS LRIKI N+L F+
Sbjct: 511 DCGLFLLFFIRRFIEEAPQRLTLQDLKMIHKKWFKPEEASALRIKIWNILVDLFR 565
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis
thaliana GN=ULP2B PE=2 SV=3
Length = 931
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 35/268 (13%)
Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
+ YP + DP++V IC D+ L P ++ I++FYI YL+ Q + +
Sbjct: 384 VVYP-KGDPDAVSICKRDVELLQPETFVNDTIIDFYINYLKNQIQTEEKHRFHFFNSFFF 442
Query: 365 FYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDK-- 422
+ D + F++ R+W + V++F K Y+ +P++ ++HWSL++IC P +
Sbjct: 443 RKLADLDKDPSSIADGKAAFLRVRKWTRKVDMFGKDYIFVPVNYNLHWSLIVICHPGEVA 502
Query: 423 --------EDESGPIILHLDSLK-LHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAER 473
+ + P ILH+DS+K H L ++++L EEW +E S I+ R
Sbjct: 503 NRTDLDLDDSKKVPCILHMDSIKGSHAGLKNL--VQTYLCEEWKERHKETSDD---ISSR 557
Query: 474 IWQ------HLPRRIDD--------RIIPRFMEEAPER---LKKKDLAMFGK-RWFRPEE 515
LP++ + + F+ EAP K + + F WF P E
Sbjct: 558 FMNLRFVSLELPQQENSFDCGLFLLHYLELFLAEAPLNFSPFKIYNASNFLYLNWFPPAE 617
Query: 516 ASGLRIKIRNLLKKQFQISSAECCNSKS 543
AS R I+ L+ + + S E N ++
Sbjct: 618 ASLKRTLIQKLIFELLENRSREVSNEQN 645
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis
thaliana GN=ULP2A PE=2 SV=2
Length = 774
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 128/271 (47%), Gaps = 33/271 (12%)
Query: 285 LHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYL 344
L T AD F + + YP + +P++V + DI L P ++ I++FYI+YL
Sbjct: 281 LGTSLTNLADSFED------LVYP-QGEPDAVVVRKQDIELLKPRRFINDTIIDFYIKYL 333
Query: 345 QLQASPTNRA-IRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVL 403
+ + SP R + F + L + G ++++ + ++W K V++F+K Y+
Sbjct: 334 KNRISPKERGRFHFFNCFFFRKLANLDKGTPSTCGGREAY-QRVQKWTKNVDLFEKDYIF 392
Query: 404 IPIHEDVHWSLVIICIPD-------KEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEW 456
IPI+ HWSLVIIC P + + P ILHLDS+K + + S+L+EEW
Sbjct: 393 IPINCSFHWSLVIICHPGELVPSHVENPQRVPCILHLDSIKGSHKGGLINIFPSYLREEW 452
Query: 457 NYLKQEVS--PSDLPIAERIWQHLPRRIDD--------RIIPRFMEEAPER----LKKKD 502
+ + S P + I LP++ + + F+ +AP + L +
Sbjct: 453 KARHENTTNDSSRAPNMQSISLELPQQENSFDCGLFLLHYLDLFVAQAPAKFNPSLISRS 512
Query: 503 LAMFGKRWFRPEEASGLRIKIRNLLKKQFQI 533
+ WF +EAS +K RN+L+ + +
Sbjct: 513 ANFLTRNWFPAKEAS---LKRRNILELLYNL 540
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2
Length = 638
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 16/115 (13%)
Query: 315 SVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAI-RDCHFFNTYFYSKLKEA- 372
S+ I TD+ L +L I++FY+RYL + N ++ D H FNT+FY++L
Sbjct: 346 SIAITNTDLTRLNEGEFLNDTIVDFYLRYLYCKLQTQNPSLANDTHIFNTFFYNRLTSKD 405
Query: 373 -----VSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDK 422
+ H+G R+W + V++F K Y+++PI+E HW L IIC D+
Sbjct: 406 KDGKRLGHRG---------VRKWTQKVDLFHKKYIIVPINETFHWYLAIICNIDR 451
>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1
Length = 1037
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
I YP + + D+ L +L I++FY++YL L+ + ++ + H F+++
Sbjct: 736 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLLLEKA-SDELVERSHIFSSF 794
Query: 365 FYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWSLVIIC 418
FY L ++ D + RR W + +NIF K Y+ +P++E HW L +IC
Sbjct: 795 FYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINIFNKDYIFVPVNESSHWYLAVIC 854
Query: 419 IP 420
P
Sbjct: 855 FP 856
>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4
Length = 1050
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 300 MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH 359
++ I YP + + D+ L +L I++FY++YL L+ + ++ + H
Sbjct: 744 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSH 802
Query: 360 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWS 413
F+++FY L ++ D + + RR W + +NIF K Y+ +P++E HW
Sbjct: 803 IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWY 862
Query: 414 LVIICIP 420
L +IC P
Sbjct: 863 LAVICFP 869
>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus GN=Senp7 PE=2 SV=1
Length = 1037
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
I YP + + D+ L +L I++FY++YL L+ + ++ + H F+++
Sbjct: 736 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLLLEKA-SDELVERSHIFSSF 794
Query: 365 FYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWSLVIIC 418
FY L ++ D + RR W + +NIF K Y+ +P++E HW L +IC
Sbjct: 795 FYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINIFNKDYIFVPVNESSHWYLAVIC 854
Query: 419 IP 420
P
Sbjct: 855 FP 856
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 46/197 (23%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
+ I DI L +L ++NFY+ L + Q P H F+T+FY KLK
Sbjct: 395 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 448
Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIIL 431
GG + +RW KGVN+F++ +L+PIH VHWSLV+I + K +
Sbjct: 449 -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLK 492
Query: 432 HLDSL--KLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPR 489
+LDS+ K H I + +L++E + SDL + E W H + P
Sbjct: 493 YLDSMGQKGH---RICEILLQYLQDE----SKTKRNSDLNLLE--WTH------HSMKP- 536
Query: 490 FMEEAPERLKKKDLAMF 506
E P++L D MF
Sbjct: 537 --HEIPQQLNGSDCGMF 551
>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1
Length = 1047
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
I YP + + D+ L +L I++FY++YL L+ + ++ + H F+++
Sbjct: 746 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSHIFSSF 804
Query: 365 FYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWSLVIIC 418
FY L ++ D + + RR W + +NIF K Y+ +P++E HW L +IC
Sbjct: 805 FYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVIC 864
Query: 419 IP 420
P
Sbjct: 865 FP 866
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 20/106 (18%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
+ I DI L +L ++NFY+ L + Q P H F+T+FY KLK
Sbjct: 395 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 448
Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
GG + +RW KGVN+F++ +L+PIH VHWSLV+I
Sbjct: 449 -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI 484
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3
Length = 1132
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 25/173 (14%)
Query: 257 RLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESV 316
+LR +Q L D+DE E + + I E+ I YP +
Sbjct: 644 QLRSKQELQFFDDDEEAGESHT------IFIGPVEKL-----------IVYPPPPAKGGI 686
Query: 317 EICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHK 376
+ D++ L+ +L I++FY++YL L+ A R H F+++FY +L + +
Sbjct: 687 SVTNEDLHCLSEGEFLNDVIIDFYLKYLVLEKLKKEDADR-IHIFSSFFYKRLNQR-ERR 744
Query: 377 GGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKE 423
+ + I+ +R W + V+IF+K ++ +P++E HW L ++C P E
Sbjct: 745 NPETTNLSIQQKRHGRVKTWTRHVDIFEKDFIFVPLNEAAHWFLAVVCFPGLE 797
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L ++NFY+ L ++ + H F+T+FY KLK
Sbjct: 394 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERSK--KQGYPALHAFSTFFYPKLKS---- 447
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
GG + +RW KGVN+F++ VL+PIH VHWSLV++
Sbjct: 448 -GG-----YQAVKRWTKGVNLFEQELVLVPIHRKVHWSLVVM 483
>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2
Length = 1112
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 301 IDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHF 360
++ I YP + + D++ L +L I++FY++YL L+ A R H
Sbjct: 651 VEKLIVYPPPPAKGGISVTNEDLHCLNEGEFLNDVIIDFYLKYLVLEKLKKEDADR-IHI 709
Query: 361 FNTYFYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWSL 414
F+++FY +L + + + + I+ +R W + V+IF+K ++ +P++E HW L
Sbjct: 710 FSSFFYKRLNQR-ERRNHETTNLSIQQKRHGRVKTWTRHVDIFEKDFIFVPLNEAAHWFL 768
Query: 415 VIICIPDKE 423
++C P E
Sbjct: 769 AVVCFPGLE 777
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L ++NFY+ L ++ + H +T+FY KLK
Sbjct: 394 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERSK--KQGYPALHALSTFFYPKLKS---- 447
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
GG + +RW KGVN+F + VL+PIH VHWSLV++
Sbjct: 448 -GG-----YQAVKRWTKGVNLFDQELVLVPIHRKVHWSLVVM 483
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
VD S++IC D+ L+ +L I+NFY++ + +++ ++ + + FNT+FYS
Sbjct: 496 VDAFSIQICKKDLATLSGLHWLNDEIINFYLQLICDRSNGDSKYPK-IYAFNTFFYSN-- 552
Query: 371 EAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPII 430
+ KG + +RW + V+IF VL+P+H +HW + +I + +K+ I
Sbjct: 553 --IVSKG------YASVKRWTRKVDIFAFDIVLVPVHLGMHWCMAVIDMGEKK------I 598
Query: 431 LHLDSLKLHCSLSIFSNIRSFLKEE 455
DSL + ++ +R +L+ E
Sbjct: 599 EFYDSL-YDGNTAVLPALRGYLEAE 622
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 17/126 (13%)
Query: 315 SVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVS 374
+++I + L P+A+L ++N Y+ L+ + + + CH+FNT+FY KL VS
Sbjct: 287 NIDITGEVLQCLTPSAWLNDEVINVYLELLKERETREPKKYLKCHYFNTFFYKKL---VS 343
Query: 375 HKGGDKDSFFIKFRRWWK----GVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPII 430
G + F RRW G + + +PIH VHW+L + I ++E + +
Sbjct: 344 DSGYN----FKAVRRWTTQRKLGYALIDCDMIFVPIHRGVHWTLAV--INNRESK----L 393
Query: 431 LHLDSL 436
L+LDSL
Sbjct: 394 LYLDSL 399
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 33/187 (17%)
Query: 250 VLPSKNPRLRKEQNLVLLD---------EDESPVEDASEESEGSLHIETTEQADEFAECM 300
L +N RL+++++ VL E E PV A E + S + T+ DEF E
Sbjct: 363 ALQLQNQRLQEQEHAVLDSVELHLRVPLEKEIPVTAAQETRKKSHQL--TDSEDEFPEIT 420
Query: 301 --IDAKIYYPSR------VDPESVEICYT--DINHLAPAAYLTSPIMNFYIRYLQLQASP 350
++ +I R V E+ + T DI L +L I+NFY+ L ++
Sbjct: 421 EEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSK- 479
Query: 351 TNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDV 410
+ H FNT+F++KLK A + +RW K V++F +L+PIH V
Sbjct: 480 -EKGFPSVHAFNTFFFTKLKTAG----------YQAVKRWTKKVDVFSVDILLVPIHLGV 528
Query: 411 HWSLVII 417
HW L ++
Sbjct: 529 HWCLAVV 535
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 150/360 (41%), Gaps = 68/360 (18%)
Query: 114 PVCLDIDGCDKLTQSPSSDCF-TQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKE 172
PV + G D+ T+ S + T T + + +++ S R + + RE D E
Sbjct: 86 PVRILNSGRDRSTRQGSGNVLGTFLTRNNDMWKRNALDSSLRYRTD-----REVIDVDDE 140
Query: 173 LSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQ 232
L + +M SD D S+ G +NV + +K+ NG + ASL S +
Sbjct: 141 LGDV------EMISD-DTSREGVENVAMEVDEVE----EKAEMGNGLFSEVASLKNGSLR 189
Query: 233 SGE----NSSSCLPKK----KESFE----VLPSKNPRLRKEQNLVLLD------------ 268
GE NSSS + + SFE VL S R K ++ +D
Sbjct: 190 VGECSKANSSSLVVNRPVTDVTSFEAYRKVLESAVNRTSKLKDRGFVDFFKERGRALLRS 249
Query: 269 ------EDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTD 322
+DE PVE E+ L E E A A D+ I + +++I
Sbjct: 250 LSSFWRQDEEPVEVVQREAFVPLSREE-ETAVRRAFSANDSNILVTHK--NSNIDITGKI 306
Query: 323 INHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKL-KEAVSHKGGDKD 381
+ L P +L ++N Y+ L+ + + + CHFFNT+F++KL A + G
Sbjct: 307 LRCLKPGKWLNDEVINLYMVLLKEREAREPKKFLKCHFFNTFFFTKLVNSATGYNYG--- 363
Query: 382 SFFIKFRRWWK----GVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLK 437
RRW G ++ + IPIH ++HW+L +I I D++ + +LDS K
Sbjct: 364 ----AVRRWTSMKRLGYHLKDCDKIFIPIHMNIHWTLAVINIKDQKFQ------YLDSFK 413
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 23/134 (17%)
Query: 322 DINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKD 381
D+ L +L ++N Y L + A P HFFN++F+ +L KG
Sbjct: 573 DLATLDGQNWLNDQVINMYGE-LIMDAVPDK-----VHFFNSFFHRQLVT----KG---- 618
Query: 382 SFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 441
+ +RW K V++F+KS +LIPIH +VHWSL+ + + ++ II DS +H
Sbjct: 619 --YNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITVTLSNR------IISFYDSQGIHFK 670
Query: 442 LSIFSNIRSFLKEE 455
+ NIR +L E
Sbjct: 671 FCV-ENIRKYLLTE 683
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 23/134 (17%)
Query: 322 DINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKD 381
D+ L +L ++N Y L + A P HFFN++F+ +L KG
Sbjct: 573 DLATLDGQNWLNDQVINMYGE-LIMDAVPDK-----VHFFNSFFHRQLVT----KG---- 618
Query: 382 SFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 441
+ +RW K V++F+KS +LIPIH +VHWSL+ + + ++ II DS +H
Sbjct: 619 --YNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITVTLSNR------IISFYDSQGIHFK 670
Query: 442 LSIFSNIRSFLKEE 455
+ NIR +L E
Sbjct: 671 FCV-ENIRKYLLTE 683
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 23/134 (17%)
Query: 322 DINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKD 381
D+ L +L ++N Y L + A P HFFN++F+ +L KG
Sbjct: 567 DLATLDGQNWLNDQVINMYGE-LIMDAVPDK-----VHFFNSFFHRQLVT----KG---- 612
Query: 382 SFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 441
+ +RW K V++F+KS +LIPIH +VHWSL+ + + S II DS +H
Sbjct: 613 --YNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITVTL------SSRIISFYDSQGIHFK 664
Query: 442 LSIFSNIRSFLKEE 455
+ NIR +L E
Sbjct: 665 FCV-ENIRKYLLTE 677
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 450 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSK--EKGLPSVHAFNTFFFTKLKTAG-- 505
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ +RW K V++F +L+PIH VHW L ++
Sbjct: 506 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 539
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 451 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSK--EKGLPSVHAFNTFFFTKLKTAG-- 506
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ +RW K V++F +L+PIH VHW L ++
Sbjct: 507 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 540
>sp|Q9EP97|SENP3_MOUSE Sentrin-specific protease 3 OS=Mus musculus GN=Senp3 PE=1 SV=1
Length = 568
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Query: 310 RVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKL 369
RV + + D+ L +L +MN Y L + P HFFN++FY KL
Sbjct: 374 RVSYKRHVLTMDDLGTLYGQNWLNDQVMNMYGD-LVMDTVPEK-----VHFFNSFFYDKL 427
Query: 370 KEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+ KG D +RW K V+IF K +LIPIH +VHWSL+ +
Sbjct: 428 RT----KGYDG------VKRWTKNVDIFNKELLLIPIHLEVHWSLISV 465
>sp|Q9H4L4|SENP3_HUMAN Sentrin-specific protease 3 OS=Homo sapiens GN=SENP3 PE=1 SV=2
Length = 574
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 322 DINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKD 381
D+ L +L +MN Y L + P HFFN++FY KL+ KG D
Sbjct: 392 DLGTLYGQNWLNDQVMNMYGD-LVMDTVP-----EKVHFFNSFFYDKLRT----KGYDG- 440
Query: 382 SFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVII 417
+RW K V+IF K +LIPIH +VHWSL+ +
Sbjct: 441 -----VKRWTKNVDIFNKELLLIPIHLEVHWSLISV 471
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 34/200 (17%)
Query: 315 SVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVS 374
+++I + L P +L + N Y+ L+ + + + CHFFNT+FY KL VS
Sbjct: 138 NIDISGETLQCLRPNQWLNDDVTNLYLELLKERQTRDPQKYFKCHFFNTFFYVKL---VS 194
Query: 375 HKGGDKDSFFIKFRRWWK----GVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPII 430
G + + RW G ++ + +PIH D+HW+L +I +++
Sbjct: 195 GSGYN----YKAVSRWTTKRKLGYDLIDCDIIFVPIHIDIHWTLGVINNRERK------F 244
Query: 431 LHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPRF 490
++LDSL +I + + +L +E +KQ+ S ++ ++ W +
Sbjct: 245 VYLDSLFTGVGHTILNAMAKYLVDE---VKQK-SQKNIDVSS--WGM-----------EY 287
Query: 491 MEEAPERLKKKDLAMFGKRW 510
+EE P++ D MF ++
Sbjct: 288 VEERPQQQNGYDCGMFMLKY 307
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1
Length = 568
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 315 SVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVS 374
++ I D++ L +L ++NFY+ + + S + ++ H FNT+FY+ L+
Sbjct: 376 NIPITLKDLHTLRNRQWLNDEVINFYMNLIS-ERSKIDSSLPRVHGFNTFFYTSLQR--- 431
Query: 375 HKGGDKDSFFIKFRRWWKG--VNIFQKSYVLIPIHEDVHWSLVII 417
+G + RRW K VNI V IP+H DVHW + +I
Sbjct: 432 -RG------YAGVRRWAKKARVNIADMDAVFIPVHLDVHWCMAVI 469
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 29/151 (19%)
Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
++ +++EI D LAP +L I+ F+++Y++ +++P A FN++FY+ L
Sbjct: 428 MNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIE-KSTPNTVA------FNSFFYTNLS 480
Query: 371 EAVSHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIH-EDVHWSLVIICIPDKEDESG 427
E ++G RRW K I + + PI+ HW+L II + K
Sbjct: 481 ER-GYQG---------VRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK----- 525
Query: 428 PIILHLDSLK---LHCSLSIFSNIRSFLKEE 455
I ++DSL S +I ++++ ++ EE
Sbjct: 526 -TIGYVDSLSNGPNAMSFAILTDLQKYVMEE 555
>sp|P40537|ULP2_YEAST Ubiquitin-like-specific protease 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP2 PE=1 SV=1
Length = 1034
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 312 DPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIR--DCHFFNTYFYSKL 369
D S I D L ++ I++F+ ++ +++S I+ H +++FY+KL
Sbjct: 438 DGSSYTITNQDFKCLFNKDWVNDSILDFFTKFY-IESSIEKSIIKREQVHLMSSFFYTKL 496
Query: 370 KEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIIC 418
+S+ ++ ++W ++F K YV+IPI+ HW II
Sbjct: 497 ---ISNPAD----YYSNVKKWVNNTDLFSKKYVVIPINISYHWFSCIIT 538
>sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 OS=Caenorhabditis elegans GN=ulp-4
PE=3 SV=2
Length = 382
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 401 YVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLK 460
Y+++P++E HWSL +IC P I + L+ ++ + I SF+K ++Y K
Sbjct: 225 YIVVPVNEWEHWSLAVICHPFTAQARTVIFDSQLTADLNNLQNMATLIESFMK--YSYEK 282
Query: 461 QEVSPSDLPIAERIWQHLPRRIDD--------RIIPRFMEEAPERLKKKDLA 504
+ + P+ + Q +P++ ++ RF+ P+ L D A
Sbjct: 283 RTGNAMPFPLPCILPQRMPQQTNNFDCGIFIAEFARRFLLSPPKDLDNFDFA 334
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus
GN=Polr2b PE=2 SV=2
Length = 1174
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
+YYP + + + Y L PA + + Y Y Q + NR+ D FF +
Sbjct: 751 LYYPQKPLVTTRSMEYLRFREL-PAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSV 809
Query: 365 FYSKLKEAVSHKGGDKDSFFIK 386
FY KE S KG D++ F K
Sbjct: 810 FYRSYKEQESKKGFDQEEVFEK 831
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens
GN=POLR2B PE=1 SV=1
Length = 1174
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
+YYP + + + Y L PA + + Y Y Q + NR+ D FF +
Sbjct: 751 LYYPQKPLVTTRSMEYLRFREL-PAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSV 809
Query: 365 FYSKLKEAVSHKGGDKDSFFIK 386
FY KE S KG D++ F K
Sbjct: 810 FYRSYKEQESKKGFDQEEVFEK 831
>sp|P27884|CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A
OS=Oryctolagus cuniculus GN=CACNA1A PE=1 SV=1
Length = 2424
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 76 KDTYSKVRHCLPDKGKKILATVTRLEKECERRR 108
+D YS HCLP +G+ A++ RL E +RRR
Sbjct: 2080 QDGYSDSEHCLPMEGQARAASMPRLPAENQRRR 2112
>sp|Q9ZA21|HGPA_HAEIF Hemoglobin and hemoglobin-haptoglobin-binding protein A
OS=Haemophilus influenzae GN=hgpA PE=1 SV=1
Length = 1077
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 157 MEENRDCREANAFDKELSILAHCDRRKMRSDG---------DLSQRGRQNVRSSSRKWPF 207
++ NRD + A KELS+ H D + + DLS +GR++V S+ PF
Sbjct: 832 IQPNRDLQPETAKTKELSLTVHNDMGYITTSVFDTRYQNFIDLSYQGRRDVHGHSKLIPF 891
Query: 208 H 208
H
Sbjct: 892 H 892
>sp|Q8C633|CABS1_MOUSE Calcium-binding and spermatid-specific protein 1 OS=Mus musculus
GN=Cabs1 PE=1 SV=1
Length = 391
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 60 DRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDI 119
D IP E I D + V C PD TV +L E+ +L DI
Sbjct: 31 DNTIPKSE--TTITSEGDHVTSVNDCTPDG--DFSTTVNKLTPTKEKLKLED------DI 80
Query: 120 DGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVF 153
+GC KLT P + T T +P + K S T F
Sbjct: 81 EGCLKLTTLPEKE-ITTPTETPNSKPKGSITENF 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,870,571
Number of Sequences: 539616
Number of extensions: 9895558
Number of successful extensions: 25481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 25337
Number of HSP's gapped (non-prelim): 160
length of query: 552
length of database: 191,569,459
effective HSP length: 123
effective length of query: 429
effective length of database: 125,196,691
effective search space: 53709380439
effective search space used: 53709380439
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)