Query 008833
Match_columns 552
No_of_seqs 194 out of 870
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 2.3E-46 7.8E-51 386.3 19.7 232 303-535 20-318 (323)
2 1th0_A SMT3-, sentrin-specific 100.0 1.7E-37 5.9E-42 306.0 20.1 217 285-529 2-222 (226)
3 2xph_A Sentrin-specific protea 100.0 3.3E-37 1.1E-41 306.4 21.3 219 282-529 11-234 (238)
4 1euv_A ULP1 protease; SUMO hyd 100.0 1.6E-36 5.5E-41 298.3 19.0 207 284-529 3-217 (221)
5 2bkr_A Sentrin-specific protea 100.0 3E-34 1E-38 280.0 16.7 190 314-532 9-211 (212)
6 2oix_A Xanthomonas outer prote 100.0 1.9E-29 6.6E-34 242.1 5.6 178 328-530 1-181 (186)
7 2oix_A Xanthomonas outer prote 86.9 0.085 2.9E-06 49.9 -1.1 20 491-510 124-143 (186)
8 2bkr_A Sentrin-specific protea 86.5 0.08 2.7E-06 50.7 -1.6 43 491-533 151-208 (212)
9 1th0_A SMT3-, sentrin-specific 84.7 0.11 3.8E-06 50.3 -1.5 19 492-510 174-192 (226)
10 1euv_A ULP1 protease; SUMO hyd 83.8 0.13 4.4E-06 49.8 -1.6 19 492-510 169-187 (221)
11 2xph_A Sentrin-specific protea 81.8 0.13 4.5E-06 50.3 -2.4 20 491-510 185-204 (238)
12 3eay_A Sentrin-specific protea 67.2 0.62 2.1E-05 48.0 -2.0 13 518-530 305-317 (323)
13 4ekf_A Adenain; alpha and beta 30.3 66 0.0023 30.6 5.3 27 409-441 52-78 (204)
14 3v1a_A Computational design, M 26.4 66 0.0022 23.9 3.6 43 64-106 2-45 (48)
15 3j21_W 50S ribosomal protein L 20.2 40 0.0014 26.9 1.6 51 60-110 6-64 (72)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=386.28 Aligned_cols=232 Identities=24% Similarity=0.476 Sum_probs=183.4
Q ss_pred ceeecCCCCCCCCeEEecchhcccCCCCCcCHHHHHHHHHHHHHhcCCCCcCCCcEEEEchhhHHHHHHhhhcC-CCC--
Q 008833 303 AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHK-GGD-- 379 (552)
Q Consensus 303 ~~i~yp~~~~~~~i~Lt~~DL~~L~p~~WLND~IInFYl~~L~~~~~~~~~~~~~v~~fnTfFy~kL~~~~~~k-g~d-- 379 (552)
..|+||+++.+++++|+.+||.||.+++||||+||||||+||..+... .....++|+||||||++|....... +.+
T Consensus 20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~-~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~ 98 (323)
T 3eay_A 20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKAS-DELVERSHIFSSFFYKCLTRKENNLTEDNPN 98 (323)
T ss_dssp EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSC-HHHHHTEEECCTHHHHHHSCC--------CC
T ss_pred eeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhcc-ccccCcEEEEchHHHHHHHhccccccccccc
Confidence 369999998899999999999999999999999999999999755432 1234789999999999997642100 000
Q ss_pred ---chhhhHHHhhhhccccccccceEEEeeecCcceEEEEEEcCCCCC--------------------------------
Q 008833 380 ---KDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKED-------------------------------- 424 (552)
Q Consensus 380 ---~~~~y~~VkrWtk~~dLfekd~IfIPIn~~~HWsLvVI~~p~k~~-------------------------------- 424 (552)
...+|.+|+|||+++|||++||||||||.+.||+|+|||+|.++.
T Consensus 99 ~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 178 (323)
T 3eay_A 99 LSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRT 178 (323)
T ss_dssp SCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC----------------------------
T ss_pred chhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccccccc
Confidence 124699999999999999999999999999999999999997520
Q ss_pred ------------------------CCCCeEEEEcCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCCccccccccccCCC
Q 008833 425 ------------------------ESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPR 480 (552)
Q Consensus 425 ------------------------e~~p~I~~~DSL~~~~~~~i~~~l~~yL~~E~~~k~~~~~~~d~pi~~~~w~~vP~ 480 (552)
.+.|||+|||||+++.+..++..|++||..||+.+.+....++..-.....+.+|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~~~~P~ 258 (323)
T 3eay_A 179 TSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPK 258 (323)
T ss_dssp ---------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCCCTTTSCEECCBCCC
T ss_pred ccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCCCHhHceeccCCCCC
Confidence 13579999999999876789999999999999988654322221110112357999
Q ss_pred ccCCCchhhhhhcccccc-----cCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhhhc
Q 008833 481 RIDDRIIPRFMEEAPERL-----KKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISS 535 (552)
Q Consensus 481 Q~N~~Dcg~Fi~~~PqQ~-----n~~DCGvF~~~wF~~edi~~lR~~I~~LIl~L~~~~~ 535 (552)
|.|++|||.|++.+.+.+ ..++-.|+...||++++|..+|..|++||++|.....
T Consensus 259 Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~ 318 (323)
T 3eay_A 259 QDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHLQQQ 318 (323)
T ss_dssp CCSTTCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998654332 2233457778999999999999999999999986653
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1.7e-37 Score=306.03 Aligned_cols=217 Identities=24% Similarity=0.371 Sum_probs=168.3
Q ss_pred CCccchHHHHHHHHhhccc---eeecCCCCCCCCeEEecchhcccCCCCCcCHHHHHHHHHHHHHhcCCCCcCCCcEEEE
Q 008833 285 LHIETTEQADEFAECMIDA---KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 361 (552)
Q Consensus 285 ~~~~~~e~~~~~~~~~~~~---~i~yp~~~~~~~i~Lt~~DL~~L~p~~WLND~IInFYl~~L~~~~~~~~~~~~~v~~f 361 (552)
++|.++|+..+|..+|.+. .+.. ...++.|+.+|+.+|.+++||||+|||||++||.++... ...+++|+|
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~--~~~~~~~~f 75 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILS----SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKK--QGYPALHVF 75 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEE----EETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHH--HTCCCEEEC
T ss_pred CCCCCHHHHHHHHHHhccCCccceee----ccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhh--ccCCcEEEE
Confidence 5778888889998888531 1222 147899999999999999999999999999999876532 125789999
Q ss_pred chhhHHHHHHhhhcCCCCchhhhHHHhhhhccccccccceEEEeeecCcceEEEEEEcCCCCCCCCCeEEEEcCCCCCCC
Q 008833 362 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 441 (552)
Q Consensus 362 nTfFy~kL~~~~~~kg~d~~~~y~~VkrWtk~~dLfekd~IfIPIn~~~HWsLvVI~~p~k~~e~~p~I~~~DSL~~~~~ 441 (552)
|||||.+|... +|..|++|+++++||++++||||||.+.||+|+||+.+.+ +|+|||||++.+
T Consensus 76 ~s~f~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~l~vi~~~~~------~i~~~DSl~~~~- 138 (226)
T 1th0_A 76 STFFYPKLKSG----------GYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLKYLDSMGQKG- 138 (226)
T ss_dssp CTTHHHHHHHH----------TGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCCCC-
T ss_pred eHHHHHHhhhc----------ccHHHHHHhhcCCcccCCEEEEeEEeCcEEEEEEEEcCCC------ceEEEcCCCCCc-
Confidence 99999999763 4889999999999999999999999999999999999887 999999999876
Q ss_pred hhHHHHHHHHHHHHHHhhhccCC-CCCccccccccccCCCccCCCchhhhhhcccccccCCCCCcccccccCHHHHHHHH
Q 008833 442 LSIFSNIRSFLKEEWNYLKQEVS-PSDLPIAERIWQHLPRRIDDRIIPRFMEEAPERLKKKDLAMFGKRWFRPEEASGLR 520 (552)
Q Consensus 442 ~~i~~~l~~yL~~E~~~k~~~~~-~~d~pi~~~~w~~vP~Q~N~~Dcg~Fi~~~PqQ~n~~DCGvF~~~wF~~edi~~lR 520 (552)
..++..|++||..++..+.+... ..+|.+.......+|+|.|++|||.|+....+.+... ....|++++|+.+|
T Consensus 139 ~~~~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~-----~~~~f~q~dm~~~R 213 (226)
T 1th0_A 139 HRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRD-----KPITFTQHQMPLFR 213 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTT-----CCCCCCGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCC-----CCCccChhhHHHHH
Confidence 46889999999999876543210 0112211001235677777777777776655544321 13469999999999
Q ss_pred HHHHHHHHH
Q 008833 521 IKIRNLLKK 529 (552)
Q Consensus 521 ~~I~~LIl~ 529 (552)
++|...|+.
T Consensus 214 ~~~~~ei~~ 222 (226)
T 1th0_A 214 KKMVWEILH 222 (226)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 3
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=3.3e-37 Score=306.42 Aligned_cols=219 Identities=23% Similarity=0.348 Sum_probs=171.4
Q ss_pred cCCCCccchHHHHHHHHhhccc----eeecCCCCCCCCeEEecchhcccCCCCCcCHHHHHHHHHHHHHhcCCCCcCCCc
Q 008833 282 EGSLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRD 357 (552)
Q Consensus 282 ~~~~~~~~~e~~~~~~~~~~~~----~i~yp~~~~~~~i~Lt~~DL~~L~p~~WLND~IInFYl~~L~~~~~~~~~~~~~ 357 (552)
...+|+.+.|...+|..++.+. .+.+ +.++.|+.+||.+|.+++||||+|||||++||.+.... ....+
T Consensus 11 ~~~~~~lt~e~~~~v~~~l~~~~~~~vl~~-----~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~--~~~~~ 83 (238)
T 2xph_A 11 EDEFPEITEEMEKEIKNVFRNGNQDEVLSE-----AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPS 83 (238)
T ss_dssp -CCCCCCCHHHHHHHHHHSSSSCTTCCCEE-----ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTS--TTSCC
T ss_pred ccCCCCCCHHHHHHHHHHHcCCChhheeec-----CCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhh--cCCCc
Confidence 3457888888888888877531 1221 45899999999999999999999999999999887643 23578
Q ss_pred EEEEchhhHHHHHHhhhcCCCCchhhhHHHhhhhccccccccceEEEeeecCcceEEEEEEcCCCCCCCCCeEEEEcCCC
Q 008833 358 CHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLK 437 (552)
Q Consensus 358 v~~fnTfFy~kL~~~~~~kg~d~~~~y~~VkrWtk~~dLfekd~IfIPIn~~~HWsLvVI~~p~k~~e~~p~I~~~DSL~ 437 (552)
+|+||||||++|... +|..|++|+++++||++++||||||.+.||+|+||+.+.+ +|+|||||+
T Consensus 84 ~~~f~sff~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~~~------~i~~~DSl~ 147 (238)
T 2xph_A 84 VHAFNTFFFTKLKTA----------GYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKK------NITYYDSMG 147 (238)
T ss_dssp EEECCTTTTHHHHTT----------CHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTC
T ss_pred eeeeecHHHHHhhhc----------ccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEcccc------eEEEeeccc
Confidence 999999999999763 4889999999999999999999999999999999999987 999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhccC-CCCCccccccccccCCCccCCCchhhhhhcccccccCCCCCcccccccCHHHH
Q 008833 438 LHCSLSIFSNIRSFLKEEWNYLKQEV-SPSDLPIAERIWQHLPRRIDDRIIPRFMEEAPERLKKKDLAMFGKRWFRPEEA 516 (552)
Q Consensus 438 ~~~~~~i~~~l~~yL~~E~~~k~~~~-~~~d~pi~~~~w~~vP~Q~N~~Dcg~Fi~~~PqQ~n~~DCGvF~~~wF~~edi 516 (552)
+.+. .++..|++||..+|..+.+.. ...+|.+.......+|+|.|++|||.|+....+.+... ....|++++|
T Consensus 148 ~~~~-~~~~~l~~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~-----~~~~f~q~dm 221 (238)
T 2xph_A 148 GINN-EACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKD-----RPINFTQQHM 221 (238)
T ss_dssp CCCH-HHHHHHHHHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTT-----CCCCCCGGGH
T ss_pred CCCH-HHHHHHHHHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcC-----CCCCcChhhH
Confidence 8764 678899999999998764421 11233221111245677777777777776655544321 1246999999
Q ss_pred HHHHHHHHHHHHH
Q 008833 517 SGLRIKIRNLLKK 529 (552)
Q Consensus 517 ~~lR~~I~~LIl~ 529 (552)
+.+|++|...|+.
T Consensus 222 ~~~R~~m~~eil~ 234 (238)
T 2xph_A 222 PYFRKRMVWEILH 234 (238)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988875
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=1.6e-36 Score=298.34 Aligned_cols=207 Identities=21% Similarity=0.347 Sum_probs=167.0
Q ss_pred CCCccchHHHHHHHHhhccce--eecCCCCCCCCeEEecchhcccCCCCCcCHHHHHHHHHHHHHhcCCCCcCCCcEEEE
Q 008833 284 SLHIETTEQADEFAECMIDAK--IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 361 (552)
Q Consensus 284 ~~~~~~~e~~~~~~~~~~~~~--i~yp~~~~~~~i~Lt~~DL~~L~p~~WLND~IInFYl~~L~~~~~~~~~~~~~v~~f 361 (552)
.+|+.+.|+..+|.+++.... +.. ...++.|+.+||.+|.+++||||+|||||++||.... +++|+|
T Consensus 3 ~~~~l~~~~~~~v~~~l~~~~~~~l~----~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f 71 (221)
T 1euv_A 3 LVPELNEKDDDQVQKALASRENTQLM----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAF 71 (221)
T ss_dssp SSCCCCHHHHHHHHHHHTCSSCCEEE----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEEC
T ss_pred cCCCCCHHHHHHHHHHhcCCCCeeee----cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEE
Confidence 367788889999988886521 111 2578999999999999999999999999999998753 579999
Q ss_pred chhhHHHHHHhhhcCCCCchhhhHHHhhhhc--cccccccceEEEeeec-CcceEEEEEEcCCCCCCCCCeEEEEcCCCC
Q 008833 362 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWK--GVNIFQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKL 438 (552)
Q Consensus 362 nTfFy~kL~~~~~~kg~d~~~~y~~VkrWtk--~~dLfekd~IfIPIn~-~~HWsLvVI~~p~k~~e~~p~I~~~DSL~~ 438 (552)
+||||++|... +|..|++|++ +++||++++||||||. +.||+|+||+.+.+ +|+|||||++
T Consensus 72 ~s~f~~~l~~~----------~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~ 135 (221)
T 1euv_A 72 NSFFYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK------TIGYVDSLSN 135 (221)
T ss_dssp CTHHHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTT------EEEEECSSCC
T ss_pred EcHHHHHhhhh----------ccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCC------EEEEEecCCC
Confidence 99999999863 5889999997 6799999999999998 59999999999987 9999999986
Q ss_pred CCCh---hHHHHHHHHHHHHHHhhhccCCCCCccccccccccCCCccCCCchhhhhhcccccccCCCCCcccccccCHHH
Q 008833 439 HCSL---SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPRFMEEAPERLKKKDLAMFGKRWFRPEE 515 (552)
Q Consensus 439 ~~~~---~i~~~l~~yL~~E~~~k~~~~~~~d~pi~~~~w~~vP~Q~N~~Dcg~Fi~~~PqQ~n~~DCGvF~~~wF~~ed 515 (552)
.+.. .++..|+.||..+++.+. +.++++. ...+|+|.|++|||.|+....+.+... ...+|++++
T Consensus 136 ~~~~~~~~i~~~l~~~l~~e~~~~~----~~~~~~~---~~~~PqQ~N~~DCGvfv~~~~~~~~~~-----~~l~f~~~d 203 (221)
T 1euv_A 136 GPNAMSFAILTDLQKYVMEESKHTI----GEDFDLI---HLDCPQQPNGYDCGIYVCMNTLYGSAD-----APLDFDYKD 203 (221)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTSSS----CTTCEEE---EECCCCCSSSSTHHHHHHHHHHHHHTT-----CCCCCCHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhc----CCCceEe---ecCCCCCCCCcCHHHHHHHHHHHHhCC-----CCCCcCHHH
Confidence 5432 578889999998876532 2334332 246888888888888887665544321 134799999
Q ss_pred HHHHHHHHHHHHHH
Q 008833 516 ASGLRIKIRNLLKK 529 (552)
Q Consensus 516 i~~lR~~I~~LIl~ 529 (552)
|+.+|++|+.+|+.
T Consensus 204 ~~~~R~~i~~~Il~ 217 (221)
T 1euv_A 204 AIRMRRFIAHLILT 217 (221)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999975
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=3e-34 Score=280.01 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=147.2
Q ss_pred CCeEEecchhcccCCCCCcCHHHHHHHHHHHHHhcCCCCcCCCcEEEEc---hhhHHHHHHhhhcCCCCchhhhHHHhhh
Q 008833 314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN---TYFYSKLKEAVSHKGGDKDSFFIKFRRW 390 (552)
Q Consensus 314 ~~i~Lt~~DL~~L~p~~WLND~IInFYl~~L~~~~~~~~~~~~~v~~fn---TfFy~kL~~~~~~kg~d~~~~y~~VkrW 390 (552)
+++.|+.+|+.+|.+++||||+|||||++||.++...+ ...++|+|+ ||||..+. .|..|++|
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~~~p~~s~f~~~~~------------~~~~v~~~ 74 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHD--SSDHVSFISPEVTQFIKCTS------------NPAEIAMF 74 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGG--GTTTEEEECHHHHHHHHHCC------------CHHHHHHH
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccC--CCCcEEEEChHHHHHHHhCC------------CHHHHHHH
Confidence 67999999999999999999999999999999987532 257899999 99995432 26789999
Q ss_pred hccccccccceEEEeeec-------CcceEEEEEEcCCCCCCCCCeEEEEcCCCCCCChhHHHHHHHHHHHHHHhhhccC
Q 008833 391 WKGVNIFQKSYVLIPIHE-------DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEV 463 (552)
Q Consensus 391 tk~~dLfekd~IfIPIn~-------~~HWsLvVI~~p~k~~e~~p~I~~~DSL~~~~~~~i~~~l~~yL~~E~~~k~~~~ 463 (552)
++++++|++++||||||. +.||+|+||+.+.+ +|+|||||++.+. .....|..+|........
T Consensus 75 ~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~------~i~~~DSl~~~n~-~~~~~l~~~l~~~l~~~~--- 144 (212)
T 2bkr_A 75 LEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKN------SFFHYDSHSRSNS-VHAKQVAEKLEAFLGRKG--- 144 (212)
T ss_dssp HGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGT------EEEEECSSTTTTH-HHHHHHHHHHHHHHSCTT---
T ss_pred hcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCC------eEEEEeCCCCCCH-HHHHHHHHHHHHHhCCcc---
Confidence 999999999999999995 79999999999987 9999999998764 333444444444332211
Q ss_pred CCCCccccccccccCCCccCCCchhhhhhcccccccC--CCCCcc-cccccCHHHHHHHHHHHHHHHHHHHh
Q 008833 464 SPSDLPIAERIWQHLPRRIDDRIIPRFMEEAPERLKK--KDLAMF-GKRWFRPEEASGLRIKIRNLLKKQFQ 532 (552)
Q Consensus 464 ~~~d~pi~~~~w~~vP~Q~N~~Dcg~Fi~~~PqQ~n~--~DCGvF-~~~wF~~edi~~lR~~I~~LIl~L~~ 532 (552)
..+.+ .-..+|+|.|++|||+|+....+.+.. ..++.+ ...||++++|+.+|++|+++|++|..
T Consensus 145 --~~~~~---~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~L~~ 211 (212)
T 2bkr_A 145 --DKLAF---VEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIATLAK 211 (212)
T ss_dssp --CCCCE---EECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_pred --ccceE---eECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 11222 125789999999999998865444311 011212 45799999999999999999999963
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.95 E-value=1.9e-29 Score=242.13 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=121.5
Q ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCcCCCcEEEEchhhHHHHHHhhhcCCCCchhhhHHHhhhhccccccccceEEEeee
Q 008833 328 PAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407 (552)
Q Consensus 328 p~~WLND~IInFYl~~L~~~~~~~~~~~~~v~~fnTfFy~kL~~~~~~kg~d~~~~y~~VkrWtk~~dLfekd~IfIPIn 407 (552)
+++||||+|||||++||.++..... ...++|||+++|+..+... ....|..+.+|++..++ +++||||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~-~~~~v~f~~p~~~~~l~~~-------~~~~~~~~~~~~~~~~~--~~~i~iPin 70 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEP-NAHLLHFADSQVVTMLSSA-------DPDQQARAQRLLAGDDI--PPIVFLPIN 70 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTST-TGGGEEECCHHHHHHTTCS-------SHHHHHHHHHHHHSTTS--CSEEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhcc-CcceEEEECHHHHHHHHhC-------CHHHHHHHHHHcccccc--cCEEEEEEe
Confidence 4789999999999999999875422 1245999998766554321 12357788899887766 999999999
Q ss_pred c-CcceEEEEEEcCCCCCCCCCeEEEEcCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCCccccccccccCCCccCCCc
Q 008833 408 E-DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRI 486 (552)
Q Consensus 408 ~-~~HWsLvVI~~p~k~~e~~p~I~~~DSL~~~~~~~i~~~l~~yL~~E~~~k~~~~~~~d~pi~~~~w~~vP~Q~N~~D 486 (552)
. +.||+|+||+.+.+ .-|+|+|||||++.+.. ...|...|...... . ..++ .-..+|+|.|++|
T Consensus 71 ~~~~HWsLlvi~~~~~---~~~~~~~~DSl~~~~~~--~~~l~~~l~~~l~~---~----~~~~---~~~~~PqQ~Ng~D 135 (186)
T 2oix_A 71 QPNAHWSLLVVDRRNK---DAVAAYHYDSMAQKDPQ--QRYLADMAAYHLGL---D----YQQT---HEMPIAIQSDGYS 135 (186)
T ss_dssp ETTTEEEEEEEECSST---TSCEEEEECCCSSCCHH--HHHHHHHHHHHTTC---C----GGGC---EEECBCCCC--CC
T ss_pred CCCCccEEEEEECCCC---eeeeeEEEcCCCCCCHH--HHHHHHHHHHHhCC---C----cccc---ccCCCCCCCCCCC
Confidence 8 89999999999987 12345999999985532 22233333221111 0 0011 1246899999999
Q ss_pred hhhhhhcccccccC--CCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 008833 487 IPRFMEEAPERLKK--KDLAMFGKRWFRPEEASGLRIKIRNLLKKQ 530 (552)
Q Consensus 487 cg~Fi~~~PqQ~n~--~DCGvF~~~wF~~edi~~lR~~I~~LIl~L 530 (552)
||+|+....+.+.. ..+......||++++|..+|+.|+++|+++
T Consensus 136 CGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 136 AGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 99998865443310 011113457999999999999999999876
No 7
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=86.88 E-value=0.085 Score=49.86 Aligned_cols=20 Identities=0% Similarity=-0.394 Sum_probs=14.8
Q ss_pred hhcccccccCCCCCcccccc
Q 008833 491 MEEAPERLKKKDLAMFGKRW 510 (552)
Q Consensus 491 i~~~PqQ~n~~DCGvF~~~w 510 (552)
...+|+|.|++|||||+|.+
T Consensus 124 ~~~~PqQ~Ng~DCGvfv~~~ 143 (186)
T 2oix_A 124 EMPIAIQSDGYSAGDHVLTG 143 (186)
T ss_dssp EECBCCCC--CCHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHH
Confidence 34689999999999998753
No 8
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=86.49 E-value=0.08 Score=50.72 Aligned_cols=43 Identities=19% Similarity=0.059 Sum_probs=28.6
Q ss_pred hhcccccccCCCCCccccccc---C-----------HHHH-HHHHHHHHHHHHHHHhh
Q 008833 491 MEEAPERLKKKDLAMFGKRWF---R-----------PEEA-SGLRIKIRNLLKKQFQI 533 (552)
Q Consensus 491 i~~~PqQ~n~~DCGvF~~~wF---~-----------~edi-~~lR~~I~~LIl~L~~~ 533 (552)
...+|+|.|++|||||+|.+. . ...+ +.-=..+|..|++++..
T Consensus 151 ~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 151 EEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp ECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999987531 1 1112 22335678888887754
No 9
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=84.69 E-value=0.11 Score=50.30 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=16.7
Q ss_pred hcccccccCCCCCcccccc
Q 008833 492 EEAPERLKKKDLAMFGKRW 510 (552)
Q Consensus 492 ~~~PqQ~n~~DCGvF~~~w 510 (552)
..+|+|.|++|||||+|.+
T Consensus 174 ~~~PqQ~Ng~DCGvfvl~~ 192 (226)
T 1th0_A 174 HEIPQQLNGSDCGMFTCKY 192 (226)
T ss_dssp TTSCCCCSSSCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHH
Confidence 4789999999999999754
No 10
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=83.81 E-value=0.13 Score=49.77 Aligned_cols=19 Identities=11% Similarity=0.115 Sum_probs=16.8
Q ss_pred hcccccccCCCCCcccccc
Q 008833 492 EEAPERLKKKDLAMFGKRW 510 (552)
Q Consensus 492 ~~~PqQ~n~~DCGvF~~~w 510 (552)
..+|+|.|++|||||+|.+
T Consensus 169 ~~~PqQ~N~~DCGvfv~~~ 187 (221)
T 1euv_A 169 LDCPQQPNGYDCGIYVCMN 187 (221)
T ss_dssp ECCCCCSSSSTHHHHHHHH
T ss_pred cCCCCCCCCcCHHHHHHHH
Confidence 4789999999999999864
No 11
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=81.82 E-value=0.13 Score=50.27 Aligned_cols=20 Identities=25% Similarity=0.601 Sum_probs=17.2
Q ss_pred hhcccccccCCCCCcccccc
Q 008833 491 MEEAPERLKKKDLAMFGKRW 510 (552)
Q Consensus 491 i~~~PqQ~n~~DCGvF~~~w 510 (552)
...+|+|.|++|||||+|.+
T Consensus 185 ~~~~PqQ~Ng~DCGvfvl~~ 204 (238)
T 2xph_A 185 SQEIPQQMNGSDCGMFACKY 204 (238)
T ss_dssp SSSSCCCSBGGGHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHH
Confidence 35789999999999999754
No 12
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=67.24 E-value=0.62 Score=47.96 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 008833 518 GLRIKIRNLLKKQ 530 (552)
Q Consensus 518 ~lR~~I~~LIl~L 530 (552)
.+|.-|..|-.+.
T Consensus 305 ei~~LI~~L~~~q 317 (323)
T 3eay_A 305 DIRELILKLHLQQ 317 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444455444433
No 13
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=30.33 E-value=66 Score=30.59 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=23.8
Q ss_pred CcceEEEEEEcCCCCCCCCCeEEEEcCCCCCCC
Q 008833 409 DVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 441 (552)
Q Consensus 409 ~~HWsLvVI~~p~k~~e~~p~I~~~DSL~~~~~ 441 (552)
+.||.-+..+.... +++.||.+|-.+.
T Consensus 52 GvHWiA~Aw~P~s~------~~YmFDPfG~sd~ 78 (204)
T 4ekf_A 52 GVHWMAFAWNPRSK------TCYLFEPFGFSDQ 78 (204)
T ss_dssp CCCEEEEEEETTTT------EEEEECTBTTCSH
T ss_pred ceeEEEeEecCCcc------eEEEeCCCCCCHH
Confidence 79999999888776 9999999998764
No 14
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=26.43 E-value=66 Score=23.91 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=34.1
Q ss_pred CchHHHHHHHHhhhhhc-ccccCCCcchHhHHHHHHHHHHHHHH
Q 008833 64 PDQELGVRIARMKDTYS-KVRHCLPDKGKKILATVTRLEKECER 106 (552)
Q Consensus 64 tD~~L~e~i~r~~~~l~-~~~~rLpD~G~K~r~~i~~~~~E~~r 106 (552)
||..|.|+|-=+++++. .-..|==|-=.-|.+.|..|++|++|
T Consensus 2 ~~dPL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 2 SGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 57799999999999985 33344446677789999999999986
No 15
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.21 E-value=40 Score=26.95 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=37.2
Q ss_pred cCCCCchHHHHHHHHhhhhhc------cccc--CCCcchHhHHHHHHHHHHHHHHHhhh
Q 008833 60 DRQIPDQELGVRIARMKDTYS------KVRH--CLPDKGKKILATVTRLEKECERRRLA 110 (552)
Q Consensus 60 ~~~~tD~~L~e~i~r~~~~l~------~~~~--rLpD~G~K~r~~i~~~~~E~~rR~~~ 110 (552)
++.+|+.||.+++...+..|- .++. -=|-.=..+|+.|.|+.=.+..|.+.
T Consensus 6 lr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~ 64 (72)
T 3j21_W 6 IREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLRE 64 (72)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999888873 2322 22555567888999988777766553
Done!