BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008834
(551 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FF10|HPSE1_ARATH Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2
SV=1
Length = 543
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/554 (61%), Positives = 427/554 (77%), Gaps = 17/554 (3%)
Query: 1 MGIFLSLFIYLISYLPVI----LARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKC 56
MG + + + + L ++ +A+++ R +I + + V DE+F+CAT+DWWPHDKC
Sbjct: 1 MGFRVCVIVVFLGCLLLVPEKTMAQEMKRASIVIQGARRVCETDENFVCATLDWWPHDKC 60
Query: 57 NYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLK 116
NY+ CPWG SSVIN+ DL+ PLL AI+AF+ LRIRIGGSLQDQV+YDVG+LK
Sbjct: 61 NYDQCPWGYSSVINM--------DLTRPLLTKAIKAFKPLRIRIGGSLQDQVIYDVGNLK 112
Query: 117 APCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGG 176
PC PF+KM GLFGFSKGCLHM+RWDELN T A+V+FGLNAL GRH +R AWGG
Sbjct: 113 TPCRPFQKMNSGLFGFSKGCLHMKRWDELNSFLTATGAVVTFGLNALRGRHKLRGKAWGG 172
Query: 177 AWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELY 236
AWD N +DFL YT+S GY IDSWE+GNELSG + +GASV AELYGKDLI LK++IN++Y
Sbjct: 173 AWDHINTQDFLNYTVSKGYVIDSWEFGNELSG-SGVGASVSAELYGKDLIVLKDVINKVY 231
Query: 237 KNS-SSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQ 295
KNS KP ++APGGF++Q+WY K L++SG +VV+ VTHHIYNLG G DP LV KI++P
Sbjct: 232 KNSWLHKPILVAPGGFYEQQWYTKLLEISGPSVVDVVTHHIYNLGSGNDPALVKKIMDPS 291
Query: 296 RLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSK 355
LS+VS+TF ++ QTI++HGPWAS WVGESGGAYNSGGRHVS+TF++SFWYLDQLGMS++
Sbjct: 292 YLSQVSKTFKDVNQTIQEHGPWASPWVGESGGAYNSGGRHVSDTFIDSFWYLDQLGMSAR 351
Query: 356 YNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAH 415
+NTKVYCRQTLVGG YGLL TF+PNPDYYSALLWHRLMGKGVL+V TDG LR YAH
Sbjct: 352 HNTKVYCRQTLVGGFYGLLEKGTFVPNPDYYSALLWHRLMGKGVLAVQTDGPPQLRVYAH 411
Query: 416 CSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGST 475
CSK R G+TLLLINLSNQ+D+ +SV N +N+ L + + + SL +KR SW+GS
Sbjct: 412 CSKGRAGVTLLLINLSNQSDFTVSVSNGINVVLNAESRK---KKSLLDTLKRPFSWIGSK 468
Query: 476 ASDGHLTREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLS 535
ASDG+L REEYHLTP++G L+S+TMVLNG L+ IP L+PV VNSP+ + LS
Sbjct: 469 ASDGYLNREEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNSPLNVLPLS 528
Query: 536 IAFIVFPNFSARAC 549
++FIV PNF A AC
Sbjct: 529 MSFIVLPNFDASAC 542
>sp|Q8L608|HPSE2_ARATH Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2
SV=1
Length = 539
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/547 (61%), Positives = 418/547 (76%), Gaps = 15/547 (2%)
Query: 3 IFLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCP 62
+FLS + L PV ++ R T+ +D ++ +A DE+FICAT+DWWP +KCNY+ CP
Sbjct: 7 VFLSCLLLLP---PVTFGSNMERTTLVIDGSRRIAETDENFICATLDWWPPEKCNYDQCP 63
Query: 63 WGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPF 122
WG +S+INL +L+ PLLA AIQAF++LRIRIGGSLQDQV+YDVGDLK PC F
Sbjct: 64 WGYASLINL--------NLASPLLAKAIQAFRTLRIRIGGSLQDQVIYDVGDLKTPCTQF 115
Query: 123 RKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNN 182
+K DGLFGFS+GCL+M+RWDE+N FN T AIV+FGLNALHGR+ + AWGG WD N
Sbjct: 116 KKTDDGLFGFSEGCLYMKRWDEVNHFFNATGAIVTFGLNALHGRNKLNGTAWGGDWDHTN 175
Query: 183 ARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSK 242
+DF+ YT+S GY IDSWE+GNELSG + I ASV ELYGKDLI LKN+I +YKNS +K
Sbjct: 176 TQDFMNYTVSKGYAIDSWEFGNELSG-SGIWASVSVELYGKDLIVLKNVIKNVYKNSRTK 234
Query: 243 PTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSE 302
P ++APGGFF+++WY++ L++SG V++ +THHIYNLGPG DP LV+KIL+P LS +SE
Sbjct: 235 PLVVAPGGFFEEQWYSELLRLSGPGVLDVLTHHIYNLGPGNDPKLVNKILDPNYLSGISE 294
Query: 303 TFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYC 362
F N+ QTI++HGPWA+AWVGE+GGA+NSGGR VS TF+NSFWYLDQLG+SSK+NTKVYC
Sbjct: 295 LFANVNQTIQEHGPWAAAWVGEAGGAFNSGGRQVSETFINSFWYLDQLGISSKHNTKVYC 354
Query: 363 RQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREG 422
RQ LVGG YGLL TF+PNPDYYSALLWHRLMGKG+L V T S LR+Y HCSK R G
Sbjct: 355 RQALVGGFYGLLEKETFVPNPDYYSALLWHRLMGKGILGVQTTASEYLRAYVHCSKRRAG 414
Query: 423 ITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLT 482
IT+LLINLS T + ++V N +K+ ++ + + +S L IK VSWVG+ ASDG+L
Sbjct: 415 ITILLINLSKHTTFTVAVSNG--VKVVLQAESMKRKSFL-ETIKSKVSWVGNKASDGYLN 471
Query: 483 REEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFP 542
REEYHL+PKDG L+S+ M+LNG PL IPKL+PVR V SP+YI LSI+FIV P
Sbjct: 472 REEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPVRHGVKSPVYINPLSISFIVLP 531
Query: 543 NFSARAC 549
F A AC
Sbjct: 532 TFDAPAC 538
>sp|Q9FZP1|HPSE3_ARATH Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2
SV=2
Length = 536
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/549 (47%), Positives = 347/549 (63%), Gaps = 24/549 (4%)
Query: 5 LSLFIYLISYLPVILARDVTRV-TIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPW 63
+ LF+ + +L ++ V T+FV V T DE FICAT+DWWP +KC+Y C W
Sbjct: 9 IVLFLCVFQFLDCTVSSAVEENGTVFVYGRAAVGTIDEDFICATLDWWPPEKCDYGSCSW 68
Query: 64 GNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFR 123
++S++NL DL++ +L NAI+AF L+IRIGG+LQD V+Y+ D K PC PF
Sbjct: 69 DHASILNL--------DLNNVILQNAIKAFAPLKIRIGGTLQDIVIYETPDSKQPCLPFT 120
Query: 124 KMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNA 183
K LFG+++GCL M+RWDELN F +T V FGLNAL GR + GAW+ NA
Sbjct: 121 KNSSILFGYTQGCLPMRRWDELNAFFRKTGTKVIFGLNALSGRSIKSNGEAIGAWNYTNA 180
Query: 184 RDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKP 243
F+++T Y ID WE GNEL G + +GA V A Y D INL+NI+N +YKN S P
Sbjct: 181 ESFIRFTAENNYTIDGWELGNELCG-SGVGARVGANQYAIDTINLRNIVNRVYKNVSPMP 239
Query: 244 TILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSET 303
++ PGGFF+ +W+ ++L N +N T HIY+LGPGVD +L+ KILNP L + +++
Sbjct: 240 LVIGPGGFFEVDWFTEYLN-KAENSLNATTRHIYDLGPGVDEHLIEKILNPSYLDQEAKS 298
Query: 304 FGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCR 363
F +LK I+ A AWVGESGGAYNSG VSN FV SFWYLDQLGM+S Y+TK YCR
Sbjct: 299 FRSLKNIIKNSSTKAVAWVGESGGAYNSGRNLVSNAFVYSFWYLDQLGMASLYDTKTYCR 358
Query: 364 QTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREGI 423
Q+L+GGNYGLLN T F PNPDYYSAL+W +LMG+ L G+ +RSY HC+++ +GI
Sbjct: 359 QSLIGGNYGLLNTTNFTPNPDYYSALIWRQLMGRKALFTTFSGTKKIRSYTHCARQSKGI 418
Query: 424 TLLLINLSNQTDYV--ISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHL 481
T+LL+NL N T V + ++NS +++ T K KRA S + +G +
Sbjct: 419 TVLLMNLDNTTTVVAKVELNNSFSLRHTKHMK----------SYKRASSQLFG-GPNGVI 467
Query: 482 TREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVF 541
REEYHLT KDG L SQTM+LNG LQ+ +P ++P+ ++ PI I SI F+
Sbjct: 468 QREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSIVFVHM 527
Query: 542 PNFSARACV 550
N AC
Sbjct: 528 RNVVVPACA 536
>sp|Q9LRC8|BAGLU_SCUBA Baicalin-beta-D-glucuronidase OS=Scutellaria baicalensis GN=SGUS
PE=1 SV=1
Length = 527
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 208/553 (37%), Positives = 301/553 (54%), Gaps = 64/553 (11%)
Query: 5 LSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWG 64
L + + + ++ ++ + T V I VA DE+++CAT+D WP KCNY +CPWG
Sbjct: 10 LCVLCFSLIFICGVIGEETTIVKI---EENPVAQTDENYVCATLDLWPPTKCNYGNCPWG 66
Query: 65 NSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHP-FR 123
SS +NL DL++ ++ NA++ F L++R GG+LQD+++Y PC F
Sbjct: 67 KSSFLNL--------DLNNNIIRNAVKEFAPLKLRFGGTLQDRLVYQTSR-DEPCDSTFY 117
Query: 124 KMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHN-----IRHNAW---- 174
+ + FS CL + RWDE+NQ T + FGLNAL G+ I+ +
Sbjct: 118 NNTNLILDFSHACLSLDRWDEINQFILETGSEAVFGLNALRGKTVEIKGIIKDGQYLGET 177
Query: 175 ---GGAWDSNNARDFLKYTISMGYQ-IDSWEYGNELSGRTSIGASVDAELYGKDLINLKN 230
G WD +N++ ++Y++ GY+ I W GNEL G T + V E Y D L
Sbjct: 178 TTAVGEWDYSNSKFLIEYSLKKGYKHIRGWTLGNELGGHT-LFIGVSPEDYANDAKKLHE 236
Query: 231 IINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSK 290
++ E+Y++ + P I+APG FD EWY +F+ + ++ THH+YNLG G D L
Sbjct: 237 LVKEIYQDQGTMPLIIAPGAIFDLEWYTEFIDRTPE--LHVATHHMYNLGSGGDDALKDV 294
Query: 291 ILNPQRLSRVSET-FGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQ 349
+L +++ + L++ + + G A AW+GE+GGA+NSG +SNTF+N FWYL+
Sbjct: 295 LLTASFFDEATKSMYEGLQKIVNRPGTKAVAWIGEAGGAFNSGQDGISNTFINGFWYLNM 354
Query: 350 LGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSS 409
LG S+ +TK +CRQTL GGNYGLL T+IPNPDYYSALLWHRLMG VL G+ +
Sbjct: 355 LGYSALLDTKTFCRQTLTGGNYGLLQTGTYIPNPDYYSALLWHRLMGSKVLKTEIVGTKN 414
Query: 410 LRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAV 469
+ YAHC+K+ GIT+L++N +GESS+ I
Sbjct: 415 VYIYAHCAKKSNGITMLVLNH-------------------------DGESSVK--ISLDP 447
Query: 470 SWVGSTASDGHLTREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPI 529
S GS REEYHLTP + LQS+ + LNG L L IP L+PV D + +
Sbjct: 448 SKYGSK-------REEYHLTPVNNNLQSRLVKLNGELLHLDPSGVIPALNPVEKDNSKQL 500
Query: 530 YITHLSIAFIVFP 542
+ S F+ P
Sbjct: 501 EVAPYSFMFVHLP 513
>sp|Q90YK5|HPSE_CHICK Heparanase OS=Gallus gallus GN=HPSE PE=1 SV=1
Length = 523
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 190/408 (46%), Gaps = 64/408 (15%)
Query: 158 FGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNEL-SGRTSIGASV 216
FGLNAL R ++ WDS+NA+ L Y Y I SWE GNE S R G +
Sbjct: 165 FGLNALLRRAGLQ-------WDSSNAKQLLGYCAQRSYNI-SWELGNEPNSFRKKSGICI 216
Query: 217 DAELYGKDLINLKNIINE--LYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVT- 273
D G+D ++L+ ++++ LY+++ + Q F++ SG ++ VT
Sbjct: 217 DGFQLGRDFVHLRQLLSQHPLYRHAELYGLDVGQPRKHTQHLLRSFMK-SGGKAIDSVTW 275
Query: 274 HHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGG 333
HH Y G L+P+ L + ++ +E P W+GE+G AY G
Sbjct: 276 HHYYVNGRSATRE---DFLSPEVLDSFATAIHDVLGIVEATVPGKKVWLGETGSAYGGGA 332
Query: 334 RHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVG-GNYGLLNATTFIPNPDYYSALLWH 392
+SNT+V F +LD+LG++++ V RQ G G+Y L++A F P PDY+ +LL+
Sbjct: 333 PQLSNTYVAGFMWLDKLGLAARRGIDVVMRQVSFGAGSYHLVDA-GFKPLPDYWLSLLYK 391
Query: 393 RLMGKGVLSVATDGSSSLRS--YAHCS-----KEREG-ITLLLINLSNQTDYVISVHNSM 444
RL+G VL + + + + R Y HC+ K REG +TL +NLSN T S+
Sbjct: 392 RLVGTRVLQASVEQADARRPRVYLHCTNPRHPKYREGDVTLFALNLSNVT-------QSL 444
Query: 445 NMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTP--KDGYLQSQTMVL 502
+ + K ++ +Y L P KD L S+ + L
Sbjct: 445 QLPKQLWSKSVD----------------------------QYLLLPHGKDSIL-SREVQL 475
Query: 503 NGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACV 550
NG LQ+ +DE +P L + + S + + S F V N A AC+
Sbjct: 476 NGRLLQMVDDETLPALHEMALAPGSTLGLPAFSYGFYVIRNAKAIACI 523
>sp|Q9Y251|HPSE_HUMAN Heparanase OS=Homo sapiens GN=HPSE PE=1 SV=2
Length = 543
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 182/407 (44%), Gaps = 63/407 (15%)
Query: 158 FGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNEL-SGRTSIGASV 216
FGLNAL +++ W+S+NA+ L Y S GY I SWE GNE S +
Sbjct: 186 FGLNALLRTADLQ-------WNSSNAQLLLDYCSSKGYNI-SWELGNEPNSFLKKADIFI 237
Query: 217 DAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQV---SGSNVVNGVT 273
+ G+D I L + L K++ + P + AK L+ +G V++ VT
Sbjct: 238 NGSQLGEDFIQLHKL---LRKSTFKNAKLYGPDVGQPRRKTAKMLKSFLKAGGEVIDSVT 294
Query: 274 HHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGG 333
H Y L LNP L + + Q +E P W+GE+ AY G
Sbjct: 295 WHHYYLNGRTATK--EDFLNPDVLDIFISSVQKVFQVVESTRPGKKVWLGETSSAYGGGA 352
Query: 334 RHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVG-GNYGLLNATTFIPNPDYYSALLWH 392
+S+TF F +LD+LG+S++ +V RQ G GNY L++ F P PDY+ +LL+
Sbjct: 353 PLLSDTFAAGFMWLDKLGLSARMGIEVVMRQVFFGAGNYHLVDE-NFDPLPDYWLSLLFK 411
Query: 393 RLMGKGVLSVATDGSS--SLRSYAHCS-----KEREG-ITLLLINLSNQTDYVISVHNSM 444
+L+G VL + GS LR Y HC+ + +EG +TL INL N T Y+ +
Sbjct: 412 KLVGTKVLMASVQGSKRRKLRVYLHCTNTDNPRYKEGDLTLYAINLHNVTKYLRLPYPFS 471
Query: 445 NMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTPKDGY-LQSQTMVLN 503
N ++ ++Y L P + L S+++ LN
Sbjct: 472 NKQV-----------------------------------DKYLLRPLGPHGLLSKSVQLN 496
Query: 504 GIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACV 550
G+ L++ +D+ +P L + S + + S +F V N AC+
Sbjct: 497 GLTLKMVDDQTLPPLMEKPLRPGSSLGLPAFSYSFFVIRNAKVAACI 543
>sp|Q9MYY0|HPSE_BOVIN Heparanase OS=Bos taurus GN=HPSE PE=2 SV=2
Length = 545
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 189/410 (46%), Gaps = 69/410 (16%)
Query: 158 FGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNEL-SGRTSIGASV 216
FG+NAL ++ WDS+NA+ L Y S Y I SWE GNE S + G +
Sbjct: 188 FGVNALLRTTDMH-------WDSSNAQLLLDYCSSKNYNI-SWELGNEPNSFQRKAGIFI 239
Query: 217 DAELYGKDLINLKNIINE-LYKNSS-SKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVT- 273
+ G+D I + ++ + +KN+ P I P + FL+ +G V++ VT
Sbjct: 240 NGRQLGEDFIEFRKLLGKSAFKNAKLYGPDIGQPRRN-TVKMLKSFLK-AGGEVIDSVTW 297
Query: 274 HHIYNLGPGVDPNLVSK--ILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNS 331
HH Y V+ + +K LNP L + + +EK P W+GE+ A+
Sbjct: 298 HHYY-----VNGRIATKEDFLNPDILDTFISSVQKTLRIVEKIRPLKKVWLGETSSAFGG 352
Query: 332 GGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVG-GNYGLLNATTFIPNPDYYSALL 390
G +SNTF F +LD+LG+S++ +V RQ L G GNY L++ F P PDY+ +LL
Sbjct: 353 GAPFLSNTFAAGFMWLDKLGLSARMGIEVVMRQVLFGAGNYHLVDG-NFEPLPDYWLSLL 411
Query: 391 WHRLMGKGVLSVATDGS--SSLRSYAHCS-----KEREG-ITLLLINLSNQTDYVISVHN 442
+ +L+G VL + G S R Y HC+ + +EG +TL +NL N T ++ H+
Sbjct: 412 FKKLVGNKVLMASVKGPDRSKFRVYLHCTNTKHPRYKEGDLTLYALNLHNVTKHLELPHH 471
Query: 443 SMNMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTPK--DGYLQSQTM 500
N ++ ++Y + P DG L S+++
Sbjct: 472 LFNKQV-----------------------------------DKYLIKPSGTDGLL-SKSV 495
Query: 501 VLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACV 550
LNG L++ +++ +P L + S + + S F V N AC+
Sbjct: 496 QLNGQILKMVDEQTLPALTEKPLHPGSSLGMPPFSYGFFVIRNAKVAACI 545
>sp|Q71RP1|HPSE_RAT Heparanase OS=Rattus norvegicus GN=Hpse PE=2 SV=1
Length = 536
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 192/422 (45%), Gaps = 63/422 (14%)
Query: 143 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEY 202
D L +R + FGLNAL ++R W+S+NA+ L Y S GY I SWE
Sbjct: 164 DMLYSFAKCSRLDLIFGLNALLRTPDLR-------WNSSNAQLLLNYCSSKGYNI-SWEL 215
Query: 203 GNEL-SGRTSIGASVDAELYGKDLINLKNIINE-LYKNSS-SKPTILAPGGFFDQEWYAK 259
GNE S S+D G+D + L ++ + ++N+ P I P G +
Sbjct: 216 GNEPNSFWKKAHISIDGLQLGEDFVELHKLLQKSAFQNAKLYGPDIGQPRGK-TVKLLRS 274
Query: 260 FLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWAS 319
FL+ +G V++ +T H Y L V L+ L + + + ++ P
Sbjct: 275 FLK-AGGEVIDSLTWHHYYLNGRVATK--EDFLSSDVLDTFILSVQKILKVTKEMTPGKK 331
Query: 320 AWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVG-GNYGLLNATT 378
W+GE+ AY G +S+TF F +LD+LG+S++ +V RQ G GNY L++
Sbjct: 332 VWLGETSSAYGGGAPLLSDTFAAGFMWLDKLGLSAQLGIEVVMRQVFFGAGNYHLVDE-N 390
Query: 379 FIPNPDYYSALLWHRLMGKGVLSVATDGS--SSLRSYAHCS-----KEREGITLLLINLS 431
F P PDY+ +LL+ +L+G VL G S LR Y HC+ + REG
Sbjct: 391 FEPLPDYWLSLLFKKLVGPKVLMSRVKGPDRSKLRVYLHCTNVYHPRYREG--------- 441
Query: 432 NQTDYVISVHN-SMNMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTP 490
+ T YV+++HN + ++KL SR + ++Y L P
Sbjct: 442 DLTLYVLNLHNVTKHLKLP--------PPMFSRPV------------------DKYLLKP 475
Query: 491 --KDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARA 548
DG L S+++ LNG L++ +++ +P L + S + + S F V N A
Sbjct: 476 FGSDGLL-SKSVQLNGQTLKMVDEQTLPALTEKPLPAGSSLSVPAFSYGFFVIRNAKIAA 534
Query: 549 CV 550
C+
Sbjct: 535 CI 536
>sp|Q6YGZ1|HPSE_MOUSE Heparanase OS=Mus musculus GN=Hpse PE=1 SV=3
Length = 535
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 181/407 (44%), Gaps = 63/407 (15%)
Query: 158 FGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNEL-SGRTSIGASV 216
FGLNAL ++R W+S+NA+ L Y S GY I SWE GNE S +
Sbjct: 178 FGLNALLRTPDLR-------WNSSNAQLLLDYCSSKGYNI-SWELGNEPNSFWKKAHILI 229
Query: 217 DAELYGKDLINLKNIINE-LYKNSS-SKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTH 274
D G+D + L ++ ++N+ P I P G + FL+ +G V++ +T
Sbjct: 230 DGLQLGEDFVELHKLLQRSAFQNAKLYGPDIGQPRGK-TVKLLRSFLK-AGGEVIDSLTW 287
Query: 275 HIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGR 334
H Y L + L+ L + + + ++ P W+GE+ AY G
Sbjct: 288 HHYYLNGRIATK--EDFLSSDVLDTFILSVQKILKVTKEITPGKKVWLGETSSAYGGGAP 345
Query: 335 HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVG-GNYGLLNATTFIPNPDYYSALLWHR 393
+SNTF F +LD+LG+S++ +V RQ G GNY L++ F P PDY+ +LL+ +
Sbjct: 346 LLSNTFAAGFMWLDKLGLSAQMGIEVVMRQVFFGAGNYHLVDE-NFEPLPDYWLSLLFKK 404
Query: 394 LMGKGVLSVATDGS--SSLRSYAHCS-----KEREG-ITLLLINLSNQTDYVISVHNSMN 445
L+G VL G S LR Y HC+ + +EG +TL ++NL N ++ H +
Sbjct: 405 LVGPRVLLSRVKGPDRSKLRVYLHCTNVYHPRYQEGDLTLYVLNLHN-----VTKHLKVP 459
Query: 446 MKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTPK--DGYLQSQTMVLN 503
L K D Y L P DG L S+++ LN
Sbjct: 460 PPLFRKPVDT------------------------------YLLKPSGPDGLL-SKSVQLN 488
Query: 504 GIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACV 550
G L++ +++ +P L + S + + S F V N AC+
Sbjct: 489 GQILKMVDEQTLPALTEKPLPAGSALSLPAFSYGFFVIRNAKIAACI 535
>sp|Q8WWQ2|HPSE2_HUMAN Inactive heparanase-2 OS=Homo sapiens GN=HPSE2 PE=1 SV=3
Length = 592
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 164/389 (42%), Gaps = 72/389 (18%)
Query: 188 KYTISMGYQIDSWEYGNELSG-RTSIGASVDAELYGKDLINLKNIINELYKNSSSK---P 243
KY+ S Y I SWE GNE + RT G +V+ GKD I LK+++ + S + P
Sbjct: 246 KYSASKKYNI-SWELGNEPNNYRTMHGRAVNGSQLGKDYIQLKSLLQPIRIYSRASLYGP 304
Query: 244 TILAPG----GFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSR 299
I P D F++V+GS V H Y G V V L + L
Sbjct: 305 NIGRPRKNVIALLD-----GFMKVAGSTVDAVTWQHCYIDGRVVK---VMDFLKTRLLDT 356
Query: 300 VSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTK 359
+S+ +++ + + P W+ G ++S+++ F +L+ LGM +
Sbjct: 357 LSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGID 416
Query: 360 VYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDG-----------SS 408
V R + Y L F P PDY+ +LL+ RL+G VL+V G
Sbjct: 417 VVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRD 476
Query: 409 SLRSYAHCSKE------REGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLS 462
LR YAHC+ R ITL +INL +++ I + ++ KL
Sbjct: 477 KLRIYAHCTNHHNHNYVRGSITLFIINL-HRSRKKIKLAGTLRDKLV------------- 522
Query: 463 RDIKRAVSWVGSTASDGHLTREEYHLTP--KDGYLQSQTMVLNGIPLQLAEDEGIPKLDP 520
+Y L P ++G L+S+++ LNG PL + +D +P+L P
Sbjct: 523 ---------------------HQYLLQPYGQEG-LKSKSVQLNGQPLVMVDDGTLPELKP 560
Query: 521 VRVDVNSPIYITHLSIAFIVFPNFSARAC 549
+ + I +++ F V N +A AC
Sbjct: 561 RPLRAGRTLVIPPVTMGFYVVKNVNALAC 589
>sp|B2RY83|HPSE2_MOUSE Inactive heparanase-2 OS=Mus musculus GN=Hpse2 PE=2 SV=1
Length = 592
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 164/389 (42%), Gaps = 72/389 (18%)
Query: 188 KYTISMGYQIDSWEYGNELSGRTSI-GASVDAELYGKDLINLKNIINELYKNSSSK---P 243
KY+ S Y I SWE GNE + SI G +V+ GKD I LK+++ + S + P
Sbjct: 246 KYSASKKYNI-SWELGNEPNNYRSIHGRAVNGSQLGKDYIQLKSLLQPIRVYSRASLYGP 304
Query: 244 TILAPG----GFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSR 299
I P D F++V+GS V H Y G V V L + L
Sbjct: 305 NIGRPRKNVIALLD-----GFMKVAGSTVDAVTWQHCYIDGRVVK---VMDFLKTRLLDT 356
Query: 300 VSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTK 359
+S+ +++ + + P W+ G ++S+++ F +L+ LGM +
Sbjct: 357 LSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGID 416
Query: 360 VYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDG-----------SS 408
V R + Y L F P PDY+ +LL+ RL+G VL+V G
Sbjct: 417 VVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRD 476
Query: 409 SLRSYAHCSKE------REGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLS 462
LR YAHC+ R ITL +INL +++ I + ++ KL
Sbjct: 477 KLRIYAHCTNHHNHNYVRGSITLFIINL-HRSRKKIKLAGTLRDKLV------------- 522
Query: 463 RDIKRAVSWVGSTASDGHLTREEYHLTP--KDGYLQSQTMVLNGIPLQLAEDEGIPKLDP 520
+Y L P ++G L+S+++ LNG PL + +D +P+L P
Sbjct: 523 ---------------------HQYLLQPYGQEG-LKSKSVQLNGQPLVMVDDGTLPELKP 560
Query: 521 VRVDVNSPIYITHLSIAFIVFPNFSARAC 549
+ + I +++ F V N +A AC
Sbjct: 561 RPLRAGRTLVIPPVTMGFYVVKNVNALAC 589
>sp|C5CXH6|HISZ_VARPS ATP phosphoribosyltransferase regulatory subunit OS=Variovorax
paradoxus (strain S110) GN=hisZ PE=3 SV=1
Length = 386
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 84 PLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLF--GFSKGCLHMQR 141
P ++ A+ + L +G Q+ +D+ DL+ + + M+ G++ G + + R
Sbjct: 235 PAVSAALAGLKQLAASLGADPARQISFDLADLRGYAY-YSGMRFGIYVPGAADALVRGGR 293
Query: 142 WDELNQLFNRTRAIVSFGLN 161
+DE+ +F R R V F L+
Sbjct: 294 YDEVGAVFGRNRPAVGFSLD 313
>sp|B0TQE8|GLMU_SHEHH Bifunctional protein GlmU OS=Shewanella halifaxensis (strain
HAW-EB4) GN=glmU PE=3 SV=1
Length = 454
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 416 CSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDI---------K 466
++E G+ +L +NL N T Y V N+ V+ KD N E +I K
Sbjct: 116 AAREDNGLAILTVNLPNPTGYGRIVREDGNVVGIVEQKDANAEQLAISEINTGIMATPGK 175
Query: 467 RAVSWVGSTASDGHLTREEYHLT 489
+ +W+G +SD + EY+LT
Sbjct: 176 QLKAWLGQLSSDN--AQGEYYLT 196
>sp|P19263|MED14_YEAST Mediator of RNA polymerase II transcription subunit 14
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RGR1 PE=1 SV=2
Length = 1082
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 4 FLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPW 63
FL L I+L + ++ + V T+T+ N+ H + ++W+ N N+C W
Sbjct: 130 FLQLIIFLRTQF--------LKLYVLVKWTRTIKQNNFHVLIDLLNWFRTTNMNVNNCIW 181
Query: 64 GNSSVIN 70
S +N
Sbjct: 182 ALKSSLN 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,678,170
Number of Sequences: 539616
Number of extensions: 9044510
Number of successful extensions: 20054
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 20009
Number of HSP's gapped (non-prelim): 37
length of query: 551
length of database: 191,569,459
effective HSP length: 123
effective length of query: 428
effective length of database: 125,196,691
effective search space: 53584183748
effective search space used: 53584183748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)