Query 008835
Match_columns 551
No_of_seqs 487 out of 2795
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 17:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 9.2E-29 2E-33 252.0 24.8 278 266-543 109-393 (514)
2 PLN03200 cellulose synthase-in 100.0 5.7E-28 1.2E-32 279.4 33.0 280 264-543 11-312 (2102)
3 PLN03200 cellulose synthase-in 100.0 3E-27 6.5E-32 273.5 31.7 284 262-546 442-767 (2102)
4 KOG4224 Armadillo repeat prote 100.0 2.3E-27 5E-32 226.3 20.0 283 262-545 122-407 (550)
5 COG5064 SRP1 Karyopherin (impo 99.9 3.7E-27 8E-32 223.1 15.9 281 263-543 111-398 (526)
6 KOG0166 Karyopherin (importin) 99.9 5.1E-26 1.1E-30 232.0 25.2 285 263-547 149-440 (514)
7 KOG4224 Armadillo repeat prote 99.9 2.6E-26 5.6E-31 219.1 20.2 279 263-543 164-446 (550)
8 COG5064 SRP1 Karyopherin (impo 99.9 1.8E-24 3.9E-29 204.9 18.8 281 262-544 153-444 (526)
9 PF05804 KAP: Kinesin-associat 99.8 4.7E-18 1E-22 183.3 27.2 265 269-542 253-519 (708)
10 PF05804 KAP: Kinesin-associat 99.8 6.5E-18 1.4E-22 182.2 27.5 272 263-542 287-563 (708)
11 PF04564 U-box: U-box domain; 99.8 1.1E-19 2.5E-24 140.3 4.7 72 170-241 1-72 (73)
12 KOG1048 Neural adherens juncti 99.7 8.8E-17 1.9E-21 169.5 20.1 279 264-543 231-595 (717)
13 KOG2122 Beta-catenin-binding p 99.7 3.5E-16 7.6E-21 171.0 18.6 261 284-545 316-603 (2195)
14 KOG4199 Uncharacterized conser 99.7 1.7E-14 3.6E-19 137.6 26.0 276 266-542 145-443 (461)
15 PF04826 Arm_2: Armadillo-like 99.6 1.8E-14 3.8E-19 138.7 20.9 194 263-461 9-206 (254)
16 PF04826 Arm_2: Armadillo-like 99.6 3.3E-14 7.3E-19 136.8 21.1 226 305-534 9-253 (254)
17 KOG1048 Neural adherens juncti 99.6 6.4E-14 1.4E-18 148.1 23.7 284 264-548 273-689 (717)
18 smart00504 Ubox Modified RING 99.6 7.6E-16 1.7E-20 116.2 5.3 63 173-236 1-63 (63)
19 KOG4199 Uncharacterized conser 99.6 1.3E-12 2.8E-17 124.8 24.3 265 275-543 116-403 (461)
20 PF10508 Proteasom_PSMB: Prote 99.5 5.2E-12 1.1E-16 135.0 28.3 275 266-542 77-365 (503)
21 KOG2122 Beta-catenin-binding p 99.5 5.4E-13 1.2E-17 146.6 16.3 225 281-505 366-605 (2195)
22 PF10508 Proteasom_PSMB: Prote 99.4 2.6E-10 5.6E-15 122.0 27.8 274 269-546 41-322 (503)
23 KOG4500 Rho/Rac GTPase guanine 99.3 1E-10 2.3E-15 115.2 19.9 282 264-546 85-434 (604)
24 PRK09687 putative lyase; Provi 99.3 1.1E-10 2.5E-15 114.8 19.7 223 266-539 54-278 (280)
25 cd00020 ARM Armadillo/beta-cat 99.3 4.9E-11 1.1E-15 102.1 13.0 117 303-419 2-120 (120)
26 cd00020 ARM Armadillo/beta-cat 99.3 1.2E-10 2.7E-15 99.6 14.9 117 426-542 2-119 (120)
27 PF15227 zf-C3HC4_4: zinc fing 99.2 3.7E-12 8.1E-17 86.3 2.8 39 176-214 1-42 (42)
28 KOG1222 Kinesin associated pro 99.2 1E-09 2.2E-14 109.7 20.6 268 266-541 260-532 (791)
29 PRK09687 putative lyase; Provi 99.2 6.1E-10 1.3E-14 109.7 19.0 226 266-542 23-249 (280)
30 KOG1222 Kinesin associated pro 99.2 7.3E-09 1.6E-13 103.6 26.3 278 265-546 303-666 (791)
31 PLN03208 E3 ubiquitin-protein 99.2 1.1E-11 2.4E-16 111.2 4.3 61 168-228 13-88 (193)
32 cd00256 VATPase_H VATPase_H, r 99.2 7.2E-09 1.6E-13 106.3 23.6 275 267-541 102-423 (429)
33 KOG4500 Rho/Rac GTPase guanine 99.2 3.3E-09 7.2E-14 104.8 20.1 278 266-544 223-520 (604)
34 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.7E-09 3.7E-14 109.0 16.9 230 309-538 56-309 (312)
35 KOG0168 Putative ubiquitin fus 99.1 8.4E-09 1.8E-13 109.5 21.1 258 265-526 166-438 (1051)
36 TIGR00599 rad18 DNA repair pro 99.1 6.9E-11 1.5E-15 119.2 5.5 70 168-238 21-90 (397)
37 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.8E-10 6E-15 76.3 2.8 38 176-214 1-39 (39)
38 PRK13800 putative oxidoreducta 99.0 6.4E-08 1.4E-12 111.0 23.7 238 264-539 619-895 (897)
39 PF03224 V-ATPase_H_N: V-ATPas 99.0 3E-08 6.5E-13 100.0 18.1 221 270-491 62-304 (312)
40 PRK13800 putative oxidoreducta 98.9 2E-07 4.4E-12 106.9 26.0 204 264-497 650-895 (897)
41 KOG0946 ER-Golgi vesicle-tethe 98.9 7.4E-07 1.6E-11 94.5 27.7 275 264-542 20-345 (970)
42 KOG0823 Predicted E3 ubiquitin 98.9 4.3E-10 9.3E-15 102.7 3.1 59 170-228 44-104 (230)
43 KOG0287 Postreplication repair 98.9 5.4E-10 1.2E-14 106.3 2.4 69 169-238 19-87 (442)
44 KOG0317 Predicted E3 ubiquitin 98.9 1E-09 2.3E-14 103.2 3.8 55 168-223 234-288 (293)
45 KOG2160 Armadillo/beta-catenin 98.9 2.9E-07 6.3E-12 90.4 20.7 184 277-461 94-283 (342)
46 PF13445 zf-RING_UBOX: RING-ty 98.9 1.3E-09 2.9E-14 73.7 2.4 36 176-212 1-43 (43)
47 PF00097 zf-C3HC4: Zinc finger 98.8 3.4E-09 7.3E-14 72.1 3.2 39 176-214 1-41 (41)
48 KOG2759 Vacuolar H+-ATPase V1 98.8 9.1E-07 2E-11 88.1 21.2 274 268-542 116-437 (442)
49 PHA02929 N1R/p28-like protein; 98.8 4.9E-09 1.1E-13 98.8 4.9 48 171-219 172-227 (238)
50 KOG3678 SARM protein (with ste 98.8 2.8E-07 6.1E-12 92.2 17.1 268 263-543 177-452 (832)
51 PF13920 zf-C3HC4_3: Zinc fing 98.8 5.3E-09 1.2E-13 74.4 3.0 47 172-219 1-48 (50)
52 PF01602 Adaptin_N: Adaptin N 98.8 6.3E-07 1.4E-11 97.4 20.5 218 267-503 80-298 (526)
53 PF14835 zf-RING_6: zf-RING of 98.7 2.4E-09 5.2E-14 77.3 0.9 59 172-233 6-65 (65)
54 KOG2973 Uncharacterized conser 98.7 2.6E-06 5.6E-11 81.5 21.1 270 267-543 4-315 (353)
55 KOG2160 Armadillo/beta-catenin 98.7 9.5E-07 2.1E-11 86.8 18.8 180 362-541 96-281 (342)
56 KOG4646 Uncharacterized conser 98.7 9.8E-08 2.1E-12 80.0 10.1 156 386-541 12-168 (173)
57 PF01602 Adaptin_N: Adaptin N 98.7 1.1E-06 2.4E-11 95.5 20.3 256 266-545 114-371 (526)
58 KOG0320 Predicted E3 ubiquitin 98.7 9.6E-09 2.1E-13 89.7 2.6 54 171-225 129-184 (187)
59 PF13639 zf-RING_2: Ring finge 98.7 1.1E-08 2.4E-13 70.7 2.3 40 175-215 2-44 (44)
60 cd00256 VATPase_H VATPase_H, r 98.6 1.2E-05 2.5E-10 83.0 24.2 236 308-543 53-308 (429)
61 COG5432 RAD18 RING-finger-cont 98.6 1.7E-08 3.7E-13 94.2 2.7 68 170-238 22-89 (391)
62 KOG4646 Uncharacterized conser 98.6 3.6E-07 7.8E-12 76.7 10.1 152 349-500 16-169 (173)
63 cd00162 RING RING-finger (Real 98.6 5.3E-08 1.1E-12 67.4 3.8 43 175-217 1-44 (45)
64 KOG4642 Chaperone-dependent E3 98.6 4.4E-07 9.5E-12 83.8 10.7 78 166-243 204-281 (284)
65 PF11789 zf-Nse: Zinc-finger o 98.5 3.2E-08 6.8E-13 71.7 1.5 44 172-215 10-55 (57)
66 KOG0978 E3 ubiquitin ligase in 98.5 2.3E-07 5.1E-12 99.0 8.4 55 171-225 641-695 (698)
67 KOG0168 Putative ubiquitin fus 98.5 4E-06 8.7E-11 89.7 17.0 215 265-483 210-437 (1051)
68 PHA02926 zinc finger-like prot 98.5 8E-08 1.7E-12 87.2 3.6 50 170-219 167-230 (242)
69 smart00184 RING Ring finger. E 98.5 1.2E-07 2.5E-12 63.3 3.6 39 176-214 1-39 (39)
70 KOG2171 Karyopherin (importin) 98.5 8.2E-06 1.8E-10 90.6 19.3 236 266-503 348-596 (1075)
71 PTZ00429 beta-adaptin; Provisi 98.5 4E-05 8.6E-10 84.9 24.5 257 266-542 68-325 (746)
72 KOG0946 ER-Golgi vesicle-tethe 98.5 6.8E-06 1.5E-10 87.4 17.1 212 310-524 24-264 (970)
73 KOG0311 Predicted E3 ubiquitin 98.4 4.4E-08 9.6E-13 94.5 0.3 71 169-239 39-111 (381)
74 KOG1293 Proteins containing ar 98.4 1.7E-05 3.6E-10 83.2 19.0 142 402-543 389-533 (678)
75 KOG2023 Nuclear transport rece 98.4 6.5E-06 1.4E-10 86.0 15.5 263 266-544 128-464 (885)
76 KOG2177 Predicted E3 ubiquitin 98.4 1.7E-07 3.7E-12 95.2 3.5 69 169-240 9-77 (386)
77 KOG2171 Karyopherin (importin) 98.4 0.0001 2.2E-09 82.2 24.2 150 393-543 351-504 (1075)
78 COG5574 PEX10 RING-finger-cont 98.3 2.2E-07 4.8E-12 86.6 2.6 52 171-222 213-265 (271)
79 PF14634 zf-RING_5: zinc-RING 98.3 3.4E-07 7.4E-12 63.0 2.8 41 175-216 1-44 (44)
80 TIGR00570 cdk7 CDK-activating 98.3 5.9E-07 1.3E-11 87.2 5.3 52 172-223 2-58 (309)
81 KOG2164 Predicted E3 ubiquitin 98.3 4.2E-07 9.1E-12 92.4 3.3 69 173-241 186-262 (513)
82 PTZ00429 beta-adaptin; Provisi 98.2 0.00055 1.2E-08 76.1 26.6 208 224-461 79-286 (746)
83 TIGR02270 conserved hypothetic 98.2 0.00012 2.6E-09 75.8 20.1 187 310-543 88-296 (410)
84 KOG1293 Proteins containing ar 98.2 9.5E-05 2.1E-09 77.7 19.1 226 277-502 388-628 (678)
85 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00066 1.4E-08 69.6 25.1 273 267-543 26-364 (371)
86 PF05536 Neurochondrin: Neuroc 98.2 4E-05 8.8E-10 82.5 16.8 189 350-541 6-211 (543)
87 KOG2759 Vacuolar H+-ATPase V1 98.2 0.0009 1.9E-08 67.2 24.0 234 308-541 65-319 (442)
88 PF05536 Neurochondrin: Neuroc 98.2 0.00015 3.2E-09 78.2 19.8 235 265-500 4-260 (543)
89 PF12678 zf-rbx1: RING-H2 zinc 98.1 2E-06 4.2E-11 66.3 3.7 39 176-215 22-73 (73)
90 KOG2973 Uncharacterized conser 98.1 9.7E-05 2.1E-09 71.0 15.0 193 311-507 6-210 (353)
91 PF00514 Arm: Armadillo/beta-c 98.1 5.3E-06 1.1E-10 56.2 4.3 40 297-336 1-40 (41)
92 KOG2734 Uncharacterized conser 98.0 0.00092 2E-08 67.3 20.7 238 284-523 102-370 (536)
93 COG5222 Uncharacterized conser 98.0 6.9E-06 1.5E-10 77.3 4.8 67 174-240 275-343 (427)
94 KOG0212 Uncharacterized conser 98.0 0.00016 3.4E-09 74.7 14.3 233 266-501 208-444 (675)
95 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0011 2.5E-08 67.8 20.2 252 288-543 5-269 (371)
96 COG1413 FOG: HEAT repeat [Ener 97.9 0.0013 2.8E-08 67.1 20.7 187 266-501 43-242 (335)
97 KOG2660 Locus-specific chromos 97.9 5.4E-06 1.2E-10 80.0 2.9 66 169-235 11-81 (331)
98 COG5231 VMA13 Vacuolar H+-ATPa 97.9 0.00039 8.4E-09 67.1 15.3 228 315-542 156-427 (432)
99 KOG2023 Nuclear transport rece 97.9 0.00022 4.8E-09 74.9 14.3 267 265-543 173-505 (885)
100 KOG4413 26S proteasome regulat 97.9 0.0014 3E-08 63.7 18.2 242 272-514 88-345 (524)
101 KOG4159 Predicted E3 ubiquitin 97.9 8.8E-06 1.9E-10 82.7 3.7 73 166-239 77-154 (398)
102 KOG1242 Protein containing ada 97.8 0.004 8.6E-08 65.7 21.7 266 266-541 134-442 (569)
103 PF12348 CLASP_N: CLASP N term 97.8 0.00017 3.6E-09 69.3 11.0 184 274-461 15-207 (228)
104 KOG0297 TNF receptor-associate 97.8 1.4E-05 3.1E-10 82.4 3.6 67 169-236 17-85 (391)
105 COG5369 Uncharacterized conser 97.8 0.00028 6.2E-09 72.4 12.6 259 284-542 407-740 (743)
106 PF12348 CLASP_N: CLASP N term 97.8 0.00025 5.4E-09 68.1 11.6 183 359-546 17-209 (228)
107 KOG0212 Uncharacterized conser 97.8 0.0016 3.5E-08 67.5 17.5 271 266-543 167-444 (675)
108 PF13646 HEAT_2: HEAT repeats; 97.7 0.00014 3E-09 58.2 8.0 86 310-415 1-88 (88)
109 TIGR02270 conserved hypothetic 97.7 0.0033 7.1E-08 65.3 19.7 153 308-501 54-207 (410)
110 PF10165 Ric8: Guanine nucleot 97.7 0.0071 1.5E-07 63.9 22.1 250 265-514 21-350 (446)
111 COG1413 FOG: HEAT repeat [Ener 97.7 0.0023 4.9E-08 65.3 17.9 184 308-540 43-239 (335)
112 KOG1517 Guanine nucleotide bin 97.7 0.0025 5.5E-08 70.4 18.6 208 305-512 509-743 (1387)
113 KOG3678 SARM protein (with ste 97.7 0.00069 1.5E-08 68.5 12.9 181 301-483 173-359 (832)
114 PF12861 zf-Apc11: Anaphase-pr 97.7 4.8E-05 1E-09 59.0 3.7 46 174-219 33-82 (85)
115 PF00514 Arm: Armadillo/beta-c 97.7 7.5E-05 1.6E-09 50.5 4.3 41 461-501 1-41 (41)
116 KOG4628 Predicted E3 ubiquitin 97.7 2.7E-05 5.9E-10 77.0 2.9 48 174-221 230-280 (348)
117 KOG0824 Predicted E3 ubiquitin 97.7 2E-05 4.3E-10 74.9 1.9 48 175-222 9-56 (324)
118 PF10165 Ric8: Guanine nucleot 97.6 0.0067 1.4E-07 64.1 20.4 258 287-545 2-339 (446)
119 KOG2734 Uncharacterized conser 97.6 0.032 6.9E-07 56.6 23.5 237 264-501 123-400 (536)
120 KOG4413 26S proteasome regulat 97.6 0.0046 9.9E-08 60.1 16.7 277 264-541 126-437 (524)
121 PF13646 HEAT_2: HEAT repeats; 97.5 0.00026 5.6E-09 56.7 6.7 86 268-374 1-88 (88)
122 KOG0802 E3 ubiquitin ligase [P 97.5 5.1E-05 1.1E-09 82.2 2.2 48 171-219 289-341 (543)
123 KOG2879 Predicted E3 ubiquitin 97.5 0.00012 2.5E-09 68.9 4.0 51 169-219 235-287 (298)
124 COG5369 Uncharacterized conser 97.4 0.0029 6.3E-08 65.3 13.5 197 328-524 409-618 (743)
125 smart00185 ARM Armadillo/beta- 97.4 0.00044 9.5E-09 46.4 5.2 39 298-336 2-40 (41)
126 COG5243 HRD1 HRD ubiquitin lig 97.3 0.00016 3.4E-09 70.6 3.7 48 171-219 285-345 (491)
127 KOG1242 Protein containing ada 97.3 0.019 4.2E-07 60.6 19.0 224 266-502 216-445 (569)
128 KOG2259 Uncharacterized conser 97.3 0.0038 8.3E-08 65.9 13.6 219 266-499 198-473 (823)
129 KOG2042 Ubiquitin fusion degra 97.3 0.0011 2.3E-08 73.7 9.9 73 168-241 865-938 (943)
130 COG5152 Uncharacterized conser 97.3 8.3E-05 1.8E-09 66.0 1.0 46 173-219 196-241 (259)
131 KOG1059 Vesicle coat complex A 97.3 0.027 6E-07 60.3 19.4 252 266-540 181-440 (877)
132 KOG3036 Protein involved in ce 97.3 0.1 2.2E-06 49.1 20.8 233 267-502 27-292 (293)
133 KOG1789 Endocytosis protein RM 97.3 0.07 1.5E-06 59.5 22.6 256 267-525 1772-2141(2235)
134 COG5540 RING-finger-containing 97.2 0.00017 3.7E-09 68.5 2.6 47 174-220 324-373 (374)
135 KOG1813 Predicted E3 ubiquitin 97.2 0.00015 3.2E-09 69.0 1.2 46 173-219 241-286 (313)
136 PF04063 DUF383: Domain of unk 97.1 0.0036 7.8E-08 57.8 9.9 122 403-524 8-157 (192)
137 COG5113 UFD2 Ubiquitin fusion 97.1 0.0013 2.9E-08 68.6 7.1 100 131-242 823-923 (929)
138 KOG1059 Vesicle coat complex A 97.1 0.069 1.5E-06 57.3 19.7 219 265-503 143-367 (877)
139 KOG1789 Endocytosis protein RM 97.1 0.12 2.6E-06 57.7 21.9 139 282-421 1741-1885(2235)
140 KOG1002 Nucleotide excision re 97.0 0.00031 6.8E-09 71.5 2.3 52 170-221 533-588 (791)
141 KOG2259 Uncharacterized conser 97.0 0.0062 1.3E-07 64.4 11.2 215 313-542 203-474 (823)
142 KOG1241 Karyopherin (importin) 97.0 0.053 1.2E-06 58.6 18.1 230 267-501 365-626 (859)
143 KOG1824 TATA-binding protein-i 97.0 0.015 3.3E-07 64.0 14.1 265 270-543 9-286 (1233)
144 PF13513 HEAT_EZ: HEAT-like re 96.9 0.0019 4.1E-08 46.6 5.0 55 363-417 1-55 (55)
145 KOG1241 Karyopherin (importin) 96.9 0.066 1.4E-06 57.9 18.2 266 266-544 129-436 (859)
146 PF11841 DUF3361: Domain of un 96.9 0.023 5.1E-07 50.3 12.5 121 384-504 5-134 (160)
147 KOG1824 TATA-binding protein-i 96.9 0.045 9.8E-07 60.4 17.0 238 263-508 44-293 (1233)
148 smart00185 ARM Armadillo/beta- 96.9 0.0022 4.8E-08 42.9 4.8 39 381-419 3-41 (41)
149 KOG0804 Cytoplasmic Zn-finger 96.9 0.00057 1.2E-08 68.7 2.4 48 169-219 171-222 (493)
150 KOG0289 mRNA splicing factor [ 96.8 0.0028 6.2E-08 63.5 6.4 51 174-225 1-52 (506)
151 PF09759 Atx10homo_assoc: Spin 96.8 0.0095 2.1E-07 48.7 8.4 67 447-513 2-71 (102)
152 PF13513 HEAT_EZ: HEAT-like re 96.7 0.002 4.3E-08 46.6 4.0 55 322-376 1-55 (55)
153 COG5231 VMA13 Vacuolar H+-ATPa 96.7 0.092 2E-06 51.2 16.0 224 276-500 159-427 (432)
154 KOG1734 Predicted RING-contain 96.7 0.00049 1.1E-08 64.4 0.7 57 171-227 222-289 (328)
155 KOG1062 Vesicle coat complex A 96.7 0.11 2.4E-06 56.6 18.1 220 312-545 111-381 (866)
156 KOG0826 Predicted E3 ubiquitin 96.7 0.0014 3E-08 63.4 3.6 54 165-219 292-346 (357)
157 COG5181 HSH155 U2 snRNP splice 96.7 0.12 2.7E-06 54.5 17.8 231 265-502 603-871 (975)
158 COG5240 SEC21 Vesicle coat com 96.7 0.25 5.3E-06 52.0 19.8 263 267-545 265-557 (898)
159 KOG1248 Uncharacterized conser 96.7 0.084 1.8E-06 59.9 17.6 220 318-543 664-898 (1176)
160 KOG1517 Guanine nucleotide bin 96.7 0.028 6.1E-07 62.5 13.5 189 351-543 474-671 (1387)
161 KOG0213 Splicing factor 3b, su 96.7 0.048 1E-06 58.7 14.7 151 391-543 800-954 (1172)
162 KOG0213 Splicing factor 3b, su 96.7 0.18 3.9E-06 54.5 18.9 229 267-503 800-1067(1172)
163 KOG1061 Vesicle coat complex A 96.7 0.02 4.3E-07 62.0 12.2 244 266-527 49-293 (734)
164 COG5096 Vesicle coat complex, 96.6 0.049 1.1E-06 60.0 15.2 138 311-460 58-195 (757)
165 PF11841 DUF3361: Domain of un 96.6 0.043 9.3E-07 48.6 12.1 117 425-541 5-129 (160)
166 KOG1077 Vesicle coat complex A 96.6 0.12 2.7E-06 55.3 17.4 262 266-544 111-399 (938)
167 KOG1061 Vesicle coat complex A 96.6 0.037 8E-07 60.0 13.7 71 266-339 121-191 (734)
168 KOG1062 Vesicle coat complex A 96.6 0.49 1.1E-05 51.8 21.9 67 266-337 142-208 (866)
169 KOG4367 Predicted Zn-finger pr 96.6 0.00087 1.9E-08 66.7 1.3 35 171-205 2-36 (699)
170 COG5096 Vesicle coat complex, 96.6 0.27 5.8E-06 54.4 20.2 142 266-420 55-196 (757)
171 PF04078 Rcd1: Cell differenti 96.4 0.14 3.1E-06 49.0 15.3 143 403-545 8-170 (262)
172 KOG4172 Predicted E3 ubiquitin 96.4 0.00086 1.9E-08 46.5 0.0 46 174-219 8-54 (62)
173 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0026 5.6E-08 62.2 3.4 54 169-224 109-166 (260)
174 PF11698 V-ATPase_H_C: V-ATPas 96.4 0.014 3E-07 49.0 7.0 71 265-335 42-113 (119)
175 KOG3039 Uncharacterized conser 96.3 0.0029 6.2E-08 58.5 2.7 53 172-225 220-276 (303)
176 KOG3036 Protein involved in ce 96.3 0.18 3.9E-06 47.5 14.3 137 407-543 96-247 (293)
177 PF07814 WAPL: Wings apart-lik 96.2 0.19 4.1E-06 51.7 16.3 274 266-547 21-359 (361)
178 PF09759 Atx10homo_assoc: Spin 96.2 0.017 3.7E-07 47.2 6.8 65 283-347 3-70 (102)
179 PF04063 DUF383: Domain of unk 96.2 0.027 5.9E-07 52.0 9.0 121 362-482 8-157 (192)
180 PF13764 E3_UbLigase_R4: E3 ub 96.2 0.64 1.4E-05 52.3 21.2 241 303-545 112-408 (802)
181 PF04078 Rcd1: Cell differenti 96.2 0.13 2.7E-06 49.4 13.5 142 362-503 8-170 (262)
182 PF08569 Mo25: Mo25-like; Int 96.1 0.12 2.7E-06 52.1 13.7 197 266-464 76-287 (335)
183 KOG1077 Vesicle coat complex A 96.1 1.1 2.4E-05 48.4 20.7 255 273-542 153-432 (938)
184 KOG0567 HEAT repeat-containing 96.0 0.32 6.9E-06 46.5 15.0 195 307-542 66-279 (289)
185 KOG1078 Vesicle coat complex C 96.0 0.53 1.2E-05 51.4 18.1 260 266-546 245-535 (865)
186 KOG0828 Predicted E3 ubiquitin 95.9 0.0047 1E-07 62.7 2.6 50 170-219 568-634 (636)
187 COG5194 APC11 Component of SCF 95.9 0.0074 1.6E-07 45.6 2.9 45 174-219 32-81 (88)
188 KOG1039 Predicted E3 ubiquitin 95.9 0.0048 1E-07 61.7 2.4 49 171-219 159-221 (344)
189 PF05004 IFRD: Interferon-rela 95.8 0.72 1.6E-05 46.3 17.6 192 351-544 45-258 (309)
190 KOG3800 Predicted E3 ubiquitin 95.7 0.0067 1.5E-07 57.9 2.6 49 175-223 2-55 (300)
191 smart00744 RINGv The RING-vari 95.7 0.012 2.6E-07 41.2 3.2 41 175-215 1-49 (49)
192 KOG4151 Myosin assembly protei 95.7 0.4 8.7E-06 52.5 16.1 239 297-540 493-738 (748)
193 KOG4151 Myosin assembly protei 95.7 0.14 3E-06 55.9 12.6 196 337-537 492-693 (748)
194 PF11793 FANCL_C: FANCL C-term 95.6 0.0036 7.8E-08 47.6 0.2 47 173-219 2-66 (70)
195 KOG1060 Vesicle coat complex A 95.6 0.72 1.6E-05 50.4 17.1 211 267-501 36-246 (968)
196 COG5181 HSH155 U2 snRNP splice 95.6 0.22 4.8E-06 52.7 13.1 155 307-464 687-874 (975)
197 PF14668 RICTOR_V: Rapamycin-i 95.5 0.062 1.4E-06 41.0 6.7 66 407-472 4-70 (73)
198 PF05004 IFRD: Interferon-rela 95.5 0.66 1.4E-05 46.6 16.1 185 315-501 50-257 (309)
199 PF12755 Vac14_Fab1_bd: Vacuol 95.5 0.091 2E-06 42.8 8.1 70 472-542 27-96 (97)
200 KOG2817 Predicted E3 ubiquitin 95.5 0.0096 2.1E-07 59.5 2.8 46 171-216 332-382 (394)
201 PF12755 Vac14_Fab1_bd: Vacuol 95.5 0.055 1.2E-06 44.1 6.8 69 389-458 26-94 (97)
202 COG5219 Uncharacterized conser 95.5 0.0056 1.2E-07 66.8 1.2 51 169-219 1465-1523(1525)
203 PF08045 CDC14: Cell division 95.5 0.23 5E-06 47.9 12.0 95 447-541 107-205 (257)
204 KOG1645 RING-finger-containing 95.5 0.0072 1.6E-07 60.2 1.9 60 173-232 4-69 (463)
205 KOG3039 Uncharacterized conser 95.3 0.012 2.6E-07 54.6 2.7 38 168-205 38-75 (303)
206 KOG0827 Predicted E3 ubiquitin 95.3 0.013 2.8E-07 58.0 2.9 52 172-223 3-60 (465)
207 KOG1493 Anaphase-promoting com 95.2 0.0088 1.9E-07 44.8 1.3 50 170-219 28-81 (84)
208 KOG4653 Uncharacterized conser 95.2 0.3 6.4E-06 53.8 13.1 215 319-542 738-963 (982)
209 PF08569 Mo25: Mo25-like; Int 95.2 1.2 2.6E-05 45.1 16.8 158 385-542 71-237 (335)
210 KOG0211 Protein phosphatase 2A 95.1 0.5 1.1E-05 52.7 15.0 258 276-541 247-506 (759)
211 KOG2999 Regulator of Rac1, req 95.1 0.72 1.6E-05 48.4 14.9 154 350-503 84-244 (713)
212 PF14447 Prok-RING_4: Prokaryo 95.1 0.012 2.5E-07 41.6 1.4 47 172-221 6-52 (55)
213 KOG4692 Predicted E3 ubiquitin 95.1 0.026 5.6E-07 55.1 4.2 48 171-219 420-467 (489)
214 COG5215 KAP95 Karyopherin (imp 95.0 2.1 4.6E-05 45.3 17.8 266 266-544 133-438 (858)
215 KOG1785 Tyrosine kinase negati 95.0 0.011 2.3E-07 58.6 1.4 47 175-221 371-418 (563)
216 PF11701 UNC45-central: Myosin 94.9 0.12 2.7E-06 46.3 8.0 146 349-498 3-156 (157)
217 PF12717 Cnd1: non-SMC mitotic 94.8 1.5 3.2E-05 40.2 15.2 111 279-401 1-112 (178)
218 KOG0825 PHD Zn-finger protein 94.8 0.0067 1.4E-07 65.0 -0.5 49 172-221 122-173 (1134)
219 PF12719 Cnd3: Nuclear condens 94.8 0.46 1E-05 47.5 12.6 187 308-501 26-233 (298)
220 KOG1571 Predicted E3 ubiquitin 94.8 0.019 4.1E-07 56.8 2.5 52 164-219 296-347 (355)
221 PF14570 zf-RING_4: RING/Ubox 94.8 0.021 4.5E-07 39.4 1.9 43 176-218 1-47 (48)
222 KOG1240 Protein kinase contain 94.6 0.68 1.5E-05 52.9 14.0 226 266-501 462-725 (1431)
223 PF06371 Drf_GBD: Diaphanous G 94.6 0.24 5.3E-06 45.6 9.4 75 426-500 102-186 (187)
224 COG5215 KAP95 Karyopherin (imp 94.5 3.7 8E-05 43.6 18.2 269 270-543 370-668 (858)
225 KOG2611 Neurochondrin/leucine- 94.4 2.7 5.9E-05 43.6 16.8 145 354-500 16-181 (698)
226 KOG4265 Predicted E3 ubiquitin 94.3 0.026 5.7E-07 55.8 2.4 48 172-220 289-337 (349)
227 PF12031 DUF3518: Domain of un 94.2 0.077 1.7E-06 49.9 5.1 120 323-443 81-228 (257)
228 KOG2979 Protein involved in DN 94.0 0.043 9.2E-07 51.8 3.0 45 172-216 175-221 (262)
229 PF12717 Cnd1: non-SMC mitotic 94.0 1.7 3.7E-05 39.8 13.6 92 321-420 1-93 (178)
230 KOG0567 HEAT repeat-containing 94.0 3.8 8.1E-05 39.4 15.7 196 264-500 65-279 (289)
231 KOG1248 Uncharacterized conser 93.9 2 4.3E-05 49.3 16.0 220 277-501 665-898 (1176)
232 KOG1240 Protein kinase contain 93.9 0.7 1.5E-05 52.8 12.4 230 309-545 423-687 (1431)
233 KOG2999 Regulator of Rac1, req 93.9 1.2 2.6E-05 46.8 13.2 153 390-542 83-241 (713)
234 COG5209 RCD1 Uncharacterized p 93.8 1.9 4.1E-05 40.2 13.0 147 324-470 116-278 (315)
235 KOG2611 Neurochondrin/leucine- 93.7 4.8 0.0001 41.8 16.9 225 271-499 16-272 (698)
236 KOG1001 Helicase-like transcri 93.6 0.017 3.8E-07 63.5 -0.4 48 174-222 455-503 (674)
237 KOG2274 Predicted importin 9 [ 93.5 1.3 2.8E-05 49.3 13.4 216 320-542 462-688 (1005)
238 COG5240 SEC21 Vesicle coat com 93.4 6.4 0.00014 41.9 17.5 110 265-381 222-335 (898)
239 PF12031 DUF3518: Domain of un 93.4 0.42 9.1E-06 45.1 8.2 87 447-533 140-235 (257)
240 PF02985 HEAT: HEAT repeat; I 93.2 0.13 2.7E-06 32.1 3.2 28 310-337 2-29 (31)
241 PF02891 zf-MIZ: MIZ/SP-RING z 93.1 0.099 2.1E-06 36.8 2.9 45 173-217 2-50 (50)
242 KOG4275 Predicted E3 ubiquitin 93.1 0.02 4.4E-07 54.5 -0.7 42 172-218 299-341 (350)
243 KOG1941 Acetylcholine receptor 93.1 0.51 1.1E-05 47.1 8.7 44 172-215 364-412 (518)
244 KOG4653 Uncharacterized conser 93.1 2.7 5.9E-05 46.7 14.9 187 264-460 725-918 (982)
245 PF12719 Cnd3: Nuclear condens 93.0 3.3 7.2E-05 41.4 14.8 169 266-442 26-208 (298)
246 KOG4185 Predicted E3 ubiquitin 92.9 0.1 2.2E-06 52.3 3.9 63 174-236 4-77 (296)
247 PF11698 V-ATPase_H_C: V-ATPas 92.9 0.25 5.3E-06 41.6 5.5 71 472-542 43-114 (119)
248 PF12530 DUF3730: Protein of u 92.9 7.7 0.00017 37.2 16.7 199 310-527 2-216 (234)
249 COG5175 MOT2 Transcriptional r 92.9 0.069 1.5E-06 51.9 2.4 49 175-223 16-68 (480)
250 PF06025 DUF913: Domain of Unk 92.5 9 0.0002 39.6 17.5 220 285-524 3-254 (379)
251 KOG0211 Protein phosphatase 2A 92.5 4.4 9.6E-05 45.4 16.0 265 267-543 356-625 (759)
252 PF05918 API5: Apoptosis inhib 92.4 2.3 5.1E-05 45.7 13.3 166 226-419 35-207 (556)
253 KOG3113 Uncharacterized conser 92.4 0.098 2.1E-06 48.9 2.6 52 170-224 108-163 (293)
254 PF13764 E3_UbLigase_R4: E3 ub 92.1 25 0.00055 39.9 23.7 234 264-503 115-408 (802)
255 KOG2032 Uncharacterized conser 92.0 4.3 9.3E-05 42.4 14.1 226 317-543 267-531 (533)
256 PF08045 CDC14: Cell division 91.9 1.5 3.2E-05 42.4 10.1 96 282-377 107-207 (257)
257 KOG3665 ZYG-1-like serine/thre 91.9 5.7 0.00012 44.5 16.2 169 372-540 494-694 (699)
258 KOG2114 Vacuolar assembly/sort 91.8 0.41 9E-06 52.6 6.9 44 169-216 836-880 (933)
259 COG5220 TFB3 Cdk activating ki 91.8 0.054 1.2E-06 50.1 0.3 49 172-220 9-65 (314)
260 KOG3161 Predicted E3 ubiquitin 91.7 0.085 1.8E-06 55.7 1.6 41 169-212 7-51 (861)
261 KOG1820 Microtubule-associated 91.5 3.4 7.3E-05 46.7 13.9 185 269-460 256-443 (815)
262 PF05918 API5: Apoptosis inhib 91.5 9.6 0.00021 41.2 16.6 133 266-416 23-159 (556)
263 PF12460 MMS19_C: RNAPII trans 91.5 3.4 7.4E-05 43.4 13.5 187 266-462 189-396 (415)
264 KOG0301 Phospholipase A2-activ 91.4 4.1 9E-05 44.0 13.6 166 272-442 550-727 (745)
265 PF06025 DUF913: Domain of Unk 91.4 3.4 7.4E-05 42.7 12.9 96 307-402 105-208 (379)
266 PF02985 HEAT: HEAT repeat; I 91.3 0.29 6.3E-06 30.5 3.2 29 391-419 1-29 (31)
267 PF06371 Drf_GBD: Diaphanous G 91.3 1.2 2.6E-05 41.0 8.8 110 266-377 66-186 (187)
268 KOG0915 Uncharacterized conser 91.3 12 0.00026 44.5 17.9 234 308-541 998-1263(1702)
269 KOG1943 Beta-tubulin folding c 91.2 20 0.00044 41.2 19.1 147 266-420 341-501 (1133)
270 PF05290 Baculo_IE-1: Baculovi 91.1 0.2 4.3E-06 42.3 2.9 50 172-221 79-134 (140)
271 KOG2930 SCF ubiquitin ligase, 91.0 0.15 3.3E-06 40.7 2.1 27 190-217 80-106 (114)
272 KOG1788 Uncharacterized conser 90.8 7.7 0.00017 44.2 15.1 251 287-542 663-981 (2799)
273 KOG2274 Predicted importin 9 [ 90.5 12 0.00026 42.1 16.3 223 277-507 461-695 (1005)
274 KOG0915 Uncharacterized conser 90.3 5.3 0.00011 47.2 14.0 225 266-504 818-1071(1702)
275 KOG1060 Vesicle coat complex A 90.1 17 0.00036 40.4 16.7 195 311-531 38-234 (968)
276 PF08324 PUL: PUL domain; Int 90.0 2.2 4.8E-05 41.8 9.9 182 312-493 67-266 (268)
277 KOG4535 HEAT and armadillo rep 89.9 0.56 1.2E-05 48.4 5.4 180 321-501 404-603 (728)
278 COG5109 Uncharacterized conser 89.9 0.22 4.7E-06 48.2 2.4 48 169-216 332-384 (396)
279 PF12460 MMS19_C: RNAPII trans 89.8 9.2 0.0002 40.2 14.9 129 390-521 271-413 (415)
280 KOG1566 Conserved protein Mo25 89.8 18 0.00039 35.8 15.2 198 265-463 78-289 (342)
281 KOG1058 Vesicle coat complex C 89.7 5.4 0.00012 43.8 12.7 63 308-374 134-197 (948)
282 KOG3002 Zn finger protein [Gen 89.3 0.3 6.5E-06 48.3 3.0 61 169-236 44-105 (299)
283 COG5627 MMS21 DNA repair prote 88.9 0.25 5.3E-06 45.8 1.9 59 173-231 189-251 (275)
284 PF08324 PUL: PUL domain; Int 88.9 6 0.00013 38.7 12.0 136 402-537 122-268 (268)
285 COG5209 RCD1 Uncharacterized p 88.8 2.4 5.2E-05 39.6 8.2 97 407-503 117-220 (315)
286 KOG2956 CLIP-associating prote 88.3 19 0.00042 37.5 15.0 187 266-460 286-477 (516)
287 PF14500 MMS19_N: Dos2-interac 88.2 27 0.00059 34.1 17.0 213 270-503 3-239 (262)
288 PF14668 RICTOR_V: Rapamycin-i 87.9 3 6.6E-05 31.9 7.0 66 448-514 4-70 (73)
289 KOG1820 Microtubule-associated 87.9 9.3 0.0002 43.3 13.7 186 351-542 255-442 (815)
290 KOG1991 Nuclear transport rece 87.5 37 0.00081 38.7 17.6 132 308-442 410-558 (1010)
291 KOG1058 Vesicle coat complex C 87.4 38 0.00083 37.5 17.1 202 279-504 219-466 (948)
292 PF10367 Vps39_2: Vacuolar sor 87.1 0.41 8.8E-06 39.7 2.1 35 167-201 72-108 (109)
293 PF10363 DUF2435: Protein of u 87.1 2.5 5.4E-05 34.0 6.5 70 266-337 3-72 (92)
294 KOG2025 Chromosome condensatio 87.1 20 0.00044 39.3 14.8 113 266-386 85-198 (892)
295 KOG0414 Chromosome condensatio 87.0 6.8 0.00015 45.2 11.9 132 277-421 934-1066(1251)
296 KOG1078 Vesicle coat complex C 86.9 52 0.0011 36.7 17.9 106 309-418 246-367 (865)
297 KOG1967 DNA repair/transcripti 86.7 2.6 5.6E-05 47.1 8.3 147 348-495 866-1018(1030)
298 KOG0414 Chromosome condensatio 86.3 4.6 0.0001 46.4 10.1 140 309-461 920-1065(1251)
299 KOG3665 ZYG-1-like serine/thre 86.1 12 0.00027 41.9 13.6 192 289-498 494-694 (699)
300 KOG2062 26S proteasome regulat 85.5 12 0.00027 41.0 12.4 134 308-455 554-689 (929)
301 KOG1991 Nuclear transport rece 85.4 76 0.0016 36.4 20.6 233 266-503 410-673 (1010)
302 KOG1967 DNA repair/transcripti 85.1 2.2 4.7E-05 47.7 6.7 147 308-455 867-1019(1030)
303 PF11865 DUF3385: Domain of un 85.0 7.4 0.00016 34.9 9.3 144 309-459 11-156 (160)
304 KOG4739 Uncharacterized protei 85.0 0.36 7.7E-06 45.4 0.7 57 176-237 6-64 (233)
305 KOG0298 DEAD box-containing he 84.7 0.31 6.6E-06 56.0 0.2 46 169-215 1149-1195(1394)
306 KOG2933 Uncharacterized conser 84.7 6 0.00013 38.9 8.8 140 351-498 90-231 (334)
307 PF14726 RTTN_N: Rotatin, an a 84.1 9.1 0.0002 31.1 8.4 68 429-496 28-95 (98)
308 KOG1940 Zn-finger protein [Gen 84.1 0.64 1.4E-05 45.1 2.1 43 173-216 158-204 (276)
309 KOG2062 26S proteasome regulat 84.0 30 0.00065 38.2 14.4 133 307-459 518-652 (929)
310 PF01347 Vitellogenin_N: Lipop 83.8 20 0.00043 39.9 14.1 167 309-498 396-586 (618)
311 smart00638 LPD_N Lipoprotein N 83.6 50 0.0011 36.3 17.0 165 309-498 358-542 (574)
312 cd03569 VHS_Hrs_Vps27p VHS dom 83.1 8.5 0.00018 33.7 8.6 73 265-337 40-114 (142)
313 PF11701 UNC45-central: Myosin 83.0 9.3 0.0002 34.1 9.0 142 392-538 5-154 (157)
314 cd03561 VHS VHS domain family; 82.8 9.5 0.00021 33.0 8.7 73 265-337 36-112 (133)
315 KOG2137 Protein kinase [Signal 82.3 6.2 0.00013 43.2 8.7 129 349-485 389-521 (700)
316 KOG1243 Protein kinase [Genera 82.2 13 0.00028 40.6 11.0 254 271-541 259-513 (690)
317 KOG4535 HEAT and armadillo rep 82.1 1.8 3.8E-05 44.9 4.3 173 366-540 408-600 (728)
318 COG5098 Chromosome condensatio 82.0 8.9 0.00019 41.8 9.5 107 392-503 301-417 (1128)
319 PF14225 MOR2-PAG1_C: Cell mor 81.9 54 0.0012 32.0 17.1 174 349-540 60-251 (262)
320 PHA02825 LAP/PHD finger-like p 81.7 1.8 3.8E-05 38.1 3.6 49 171-220 6-60 (162)
321 KOG1566 Conserved protein Mo25 81.5 59 0.0013 32.3 14.4 155 386-541 75-239 (342)
322 PF10363 DUF2435: Protein of u 81.4 6 0.00013 31.8 6.4 72 433-505 5-76 (92)
323 PF11707 Npa1: Ribosome 60S bi 81.2 66 0.0014 32.6 16.8 157 267-423 57-241 (330)
324 COG5098 Chromosome condensatio 81.1 64 0.0014 35.6 15.3 130 278-421 908-1039(1128)
325 KOG1814 Predicted E3 ubiquitin 80.9 1.9 4.1E-05 43.7 4.0 36 171-206 182-220 (445)
326 PF14569 zf-UDP: Zinc-binding 80.8 2.1 4.4E-05 32.7 3.2 48 172-219 8-62 (80)
327 KOG2933 Uncharacterized conser 80.7 8.8 0.00019 37.8 8.3 142 265-417 87-232 (334)
328 KOG4362 Transcriptional regula 80.5 0.61 1.3E-05 50.7 0.5 50 172-221 20-71 (684)
329 KOG2956 CLIP-associating prote 80.0 70 0.0015 33.6 14.8 144 391-541 330-475 (516)
330 cd03568 VHS_STAM VHS domain fa 79.6 12 0.00026 32.9 8.3 73 265-337 36-110 (144)
331 KOG2025 Chromosome condensatio 79.2 12 0.00025 41.1 9.3 126 405-538 61-188 (892)
332 smart00638 LPD_N Lipoprotein N 78.9 56 0.0012 35.9 15.3 205 309-539 312-541 (574)
333 COG5116 RPN2 26S proteasome re 78.8 10 0.00022 40.4 8.5 122 309-444 552-675 (926)
334 smart00288 VHS Domain present 78.8 16 0.00034 31.7 8.7 73 265-337 36-111 (133)
335 cd03569 VHS_Hrs_Vps27p VHS dom 78.6 13 0.00028 32.6 8.2 73 472-544 41-115 (142)
336 KOG0301 Phospholipase A2-activ 78.3 97 0.0021 34.0 15.7 180 354-540 549-744 (745)
337 PF11865 DUF3385: Domain of un 78.2 19 0.00042 32.2 9.4 143 350-499 11-155 (160)
338 cd03561 VHS VHS domain family; 78.0 13 0.00029 32.1 8.1 74 472-545 37-114 (133)
339 KOG1943 Beta-tubulin folding c 77.8 66 0.0014 37.3 14.9 227 307-541 340-609 (1133)
340 KOG0883 Cyclophilin type, U bo 77.7 1.8 3.9E-05 43.3 2.7 52 173-225 40-91 (518)
341 cd03567 VHS_GGA VHS domain fam 77.5 17 0.00037 31.7 8.5 72 265-336 37-115 (139)
342 PF08746 zf-RING-like: RING-li 77.1 2.6 5.5E-05 28.6 2.5 39 176-214 1-43 (43)
343 KOG2032 Uncharacterized conser 76.8 16 0.00035 38.3 9.3 154 348-502 253-416 (533)
344 PF05883 Baculo_RING: Baculovi 76.4 2.2 4.9E-05 36.5 2.6 45 173-218 26-79 (134)
345 COG5656 SXM1 Importin, protein 76.4 1.4E+02 0.0029 33.5 17.6 139 266-406 408-558 (970)
346 PF12906 RINGv: RING-variant d 76.0 2.2 4.7E-05 29.5 2.0 39 176-214 1-47 (47)
347 KOG4464 Signaling protein RIC- 75.4 1.1E+02 0.0023 31.8 17.0 103 279-381 110-234 (532)
348 cd03568 VHS_STAM VHS domain fa 75.1 17 0.00038 31.9 8.0 73 472-544 37-111 (144)
349 PF14500 MMS19_N: Dos2-interac 75.0 87 0.0019 30.6 15.7 219 312-545 3-239 (262)
350 COG3813 Uncharacterized protei 74.9 2.8 6E-05 31.3 2.4 33 192-227 28-60 (84)
351 KOG2137 Protein kinase [Signal 74.8 21 0.00046 39.2 10.0 149 307-460 388-539 (700)
352 PHA03096 p28-like protein; Pro 74.7 1.8 4E-05 42.5 1.9 43 174-216 179-231 (284)
353 KOG1020 Sister chromatid cohes 74.7 37 0.00081 40.6 12.3 113 308-427 816-929 (1692)
354 cd03572 ENTH_epsin_related ENT 74.6 8.9 0.00019 32.6 5.8 72 473-544 39-120 (122)
355 PHA02862 5L protein; Provision 73.4 3 6.5E-05 35.9 2.6 45 175-220 4-54 (156)
356 PF08167 RIX1: rRNA processing 72.9 13 0.00028 33.6 6.8 108 309-419 26-143 (165)
357 PF14446 Prok-RING_1: Prokaryo 71.7 3.5 7.6E-05 29.3 2.2 29 173-201 5-37 (54)
358 smart00288 VHS Domain present 71.7 25 0.00053 30.4 8.1 71 473-543 38-111 (133)
359 KOG3970 Predicted E3 ubiquitin 70.1 8.1 0.00018 35.8 4.7 44 175-218 52-104 (299)
360 PF10272 Tmpp129: Putative tra 69.9 2.9 6.3E-05 42.4 2.1 29 194-222 314-354 (358)
361 COG5218 YCG1 Chromosome conden 69.8 53 0.0012 35.4 11.1 111 265-383 90-201 (885)
362 PF14666 RICTOR_M: Rapamycin-i 69.6 1.1E+02 0.0023 29.3 12.8 128 404-542 78-224 (226)
363 KOG2034 Vacuolar sorting prote 69.2 3.9 8.5E-05 45.6 3.0 37 169-205 813-851 (911)
364 PF01347 Vitellogenin_N: Lipop 69.2 1.8E+02 0.0039 32.3 16.4 129 310-455 433-584 (618)
365 PF11707 Npa1: Ribosome 60S bi 69.2 1.3E+02 0.0029 30.3 20.2 155 310-464 58-241 (330)
366 KOG3899 Uncharacterized conser 69.1 2.6 5.6E-05 40.5 1.5 30 193-222 327-368 (381)
367 COG5218 YCG1 Chromosome conden 69.0 40 0.00086 36.4 10.0 101 430-537 90-193 (885)
368 PF14726 RTTN_N: Rotatin, an a 68.9 38 0.00083 27.5 8.0 69 388-456 28-96 (98)
369 PF05605 zf-Di19: Drought indu 68.9 2.2 4.7E-05 30.5 0.7 38 172-216 1-39 (54)
370 PF14225 MOR2-PAG1_C: Cell mor 68.6 1.2E+02 0.0026 29.6 17.8 213 272-501 13-254 (262)
371 PF08167 RIX1: rRNA processing 68.5 23 0.00049 31.9 7.5 108 350-460 26-143 (165)
372 KOG1812 Predicted E3 ubiquitin 68.5 3.6 7.7E-05 42.6 2.5 49 173-221 146-205 (384)
373 cd03567 VHS_GGA VHS domain fam 68.3 33 0.00071 30.0 8.1 72 472-543 38-116 (139)
374 PRK14707 hypothetical protein; 68.0 3.4E+02 0.0074 34.5 19.2 255 279-539 178-441 (2710)
375 PF06844 DUF1244: Protein of u 67.4 3.5 7.7E-05 30.3 1.5 13 194-206 11-23 (68)
376 PF14353 CpXC: CpXC protein 67.3 3.3 7.3E-05 35.5 1.7 47 173-219 1-49 (128)
377 PF00790 VHS: VHS domain; Int 66.9 25 0.00054 30.6 7.2 73 473-545 43-120 (140)
378 KOG1788 Uncharacterized conser 66.4 2.7E+02 0.0058 32.7 19.6 81 423-503 900-984 (2799)
379 COG5236 Uncharacterized conser 66.1 4.7 0.0001 39.8 2.6 48 171-218 59-107 (493)
380 PF00790 VHS: VHS domain; Int 66.0 19 0.00041 31.4 6.3 73 265-337 41-118 (140)
381 PRK06266 transcription initiat 65.9 18 0.00039 33.1 6.2 53 171-239 115-168 (178)
382 PF12530 DUF3730: Protein of u 65.2 1.3E+02 0.0028 28.7 15.9 135 270-418 4-150 (234)
383 KOG0825 PHD Zn-finger protein 64.3 6.5 0.00014 43.2 3.4 48 168-215 91-150 (1134)
384 COG5116 RPN2 26S proteasome re 63.5 18 0.00039 38.7 6.3 67 430-504 550-618 (926)
385 COG5656 SXM1 Importin, protein 61.7 2.7E+02 0.0059 31.3 17.1 121 307-429 407-538 (970)
386 PLN02189 cellulose synthase 61.6 6.3 0.00014 45.3 2.9 47 173-219 34-87 (1040)
387 PF04499 SAPS: SIT4 phosphatas 61.5 55 0.0012 35.0 9.8 111 430-544 20-150 (475)
388 COG1675 TFA1 Transcription ini 60.8 24 0.00051 32.1 5.9 51 171-237 111-162 (176)
389 PF10521 DUF2454: Protein of u 60.7 78 0.0017 31.2 10.3 71 390-460 119-203 (282)
390 TIGR00373 conserved hypothetic 60.5 15 0.00032 32.9 4.6 35 171-221 107-141 (158)
391 PF08216 CTNNBL: Catenin-beta- 60.4 12 0.00026 30.9 3.6 43 283-326 63-105 (108)
392 PF06906 DUF1272: Protein of u 60.3 10 0.00022 27.1 2.7 26 193-221 29-54 (57)
393 PLN02436 cellulose synthase A 59.3 7.3 0.00016 44.9 2.9 48 172-219 35-89 (1094)
394 KOG1020 Sister chromatid cohes 58.7 1E+02 0.0022 37.2 11.7 106 349-461 816-922 (1692)
395 PLN03076 ARF guanine nucleotid 57.4 1.6E+02 0.0034 37.0 13.7 135 319-459 1148-1298(1780)
396 KOG3268 Predicted E3 ubiquitin 56.9 8.6 0.00019 34.3 2.3 45 175-219 167-228 (234)
397 KOG4718 Non-SMC (structural ma 56.8 6.9 0.00015 36.0 1.8 49 172-221 180-229 (235)
398 PF10521 DUF2454: Protein of u 56.8 66 0.0014 31.8 9.0 112 349-460 119-253 (282)
399 KOG0309 Conserved WD40 repeat- 56.7 7.4 0.00016 42.6 2.3 44 172-216 1027-1073(1081)
400 PF14666 RICTOR_M: Rapamycin-i 55.7 1.9E+02 0.0041 27.5 13.2 129 322-459 78-224 (226)
401 KOG4445 Uncharacterized conser 55.6 12 0.00027 36.3 3.3 48 173-220 115-187 (368)
402 PF07191 zinc-ribbons_6: zinc- 55.5 0.54 1.2E-05 35.3 -4.5 42 173-220 1-42 (70)
403 PLN02638 cellulose synthase A 54.8 8.7 0.00019 44.4 2.6 47 173-219 17-70 (1079)
404 PLN02195 cellulose synthase A 54.4 9.9 0.00021 43.5 2.9 46 174-219 7-59 (977)
405 PF10497 zf-4CXXC_R1: Zinc-fin 54.4 17 0.00036 30.1 3.6 25 192-216 37-69 (105)
406 PF10235 Cript: Microtubule-as 53.8 7.9 0.00017 30.8 1.5 39 172-220 43-81 (90)
407 cd08050 TAF6 TATA Binding Prot 53.5 90 0.0019 31.9 9.5 141 351-500 180-339 (343)
408 cd00350 rubredoxin_like Rubred 52.8 6.7 0.00015 24.8 0.8 11 207-217 16-26 (33)
409 PF12830 Nipped-B_C: Sister ch 52.7 1.6E+02 0.0034 27.1 10.2 126 390-525 8-141 (187)
410 PF08216 CTNNBL: Catenin-beta- 52.6 17 0.00037 30.0 3.3 42 407-448 63-104 (108)
411 PLN02915 cellulose synthase A 52.6 9.7 0.00021 43.9 2.5 47 173-219 15-68 (1044)
412 PF10274 ParcG: Parkin co-regu 52.6 1.9E+02 0.0041 26.5 10.5 73 389-461 37-110 (183)
413 PF03854 zf-P11: P-11 zinc fin 52.5 5.8 0.00013 27.2 0.4 31 190-221 18-48 (50)
414 KOG1952 Transcription factor N 51.6 13 0.00027 41.6 3.0 46 172-217 190-245 (950)
415 PF12830 Nipped-B_C: Sister ch 51.6 47 0.001 30.6 6.5 67 473-545 9-76 (187)
416 smart00531 TFIIE Transcription 51.0 19 0.00041 31.7 3.7 38 171-220 97-135 (147)
417 PF10274 ParcG: Parkin co-regu 50.8 2E+02 0.0044 26.4 11.3 112 432-544 39-165 (183)
418 PF11864 DUF3384: Domain of un 50.5 3.4E+02 0.0074 28.9 16.6 103 433-541 215-328 (464)
419 PF11791 Aconitase_B_N: Aconit 50.0 17 0.00037 31.9 3.0 45 474-529 96-140 (154)
420 PF12726 SEN1_N: SEN1 N termin 49.8 1.9E+02 0.0041 32.9 12.3 124 390-514 441-568 (727)
421 PF12231 Rif1_N: Rap1-interact 49.3 1.3E+02 0.0029 31.0 10.1 174 319-500 4-203 (372)
422 PF07814 WAPL: Wings apart-lik 48.9 78 0.0017 32.5 8.3 91 392-482 23-116 (361)
423 PRK12495 hypothetical protein; 48.2 17 0.00037 33.9 2.9 31 111-142 7-37 (226)
424 KOG1243 Protein kinase [Genera 48.2 1.2E+02 0.0026 33.5 9.6 149 387-543 327-476 (690)
425 KOG2038 CAATT-binding transcri 47.9 3.1E+02 0.0067 30.9 12.5 206 267-500 197-408 (988)
426 KOG0396 Uncharacterized conser 47.8 15 0.00033 36.9 2.7 48 174-221 331-381 (389)
427 KOG1100 Predicted E3 ubiquitin 47.2 9.9 0.00021 35.6 1.3 39 176-219 161-200 (207)
428 PF06676 DUF1178: Protein of u 47.1 7.3 0.00016 34.2 0.4 24 190-218 9-42 (148)
429 PRK14707 hypothetical protein; 47.1 7.4E+02 0.016 31.9 20.1 272 266-541 205-486 (2710)
430 KOG0392 SNF2 family DNA-depend 47.1 2.3E+02 0.0049 33.9 11.9 233 265-503 76-327 (1549)
431 KOG1815 Predicted E3 ubiquitin 46.7 16 0.00035 38.7 3.0 37 170-206 67-104 (444)
432 KOG3579 Predicted E3 ubiquitin 46.4 12 0.00026 36.1 1.6 36 171-206 266-305 (352)
433 KOG2932 E3 ubiquitin ligase in 45.7 9 0.00019 37.4 0.8 43 174-219 91-134 (389)
434 cd00197 VHS_ENTH_ANTH VHS, ENT 45.1 1.6E+02 0.0035 24.3 8.4 70 265-334 36-112 (115)
435 COG3492 Uncharacterized protei 45.1 12 0.00025 29.5 1.1 13 194-206 42-54 (104)
436 COG2176 PolC DNA polymerase II 44.6 19 0.00041 42.0 3.1 43 167-221 908-952 (1444)
437 PF07800 DUF1644: Protein of u 43.0 12 0.00026 33.0 1.1 20 172-191 1-20 (162)
438 PF06012 DUF908: Domain of Unk 42.9 1E+02 0.0022 31.2 8.0 76 405-480 237-324 (329)
439 PF11864 DUF3384: Domain of un 42.3 4.5E+02 0.0098 28.0 19.2 63 473-542 214-284 (464)
440 PF04821 TIMELESS: Timeless pr 42.2 1.6E+02 0.0036 28.7 9.0 157 349-541 13-206 (266)
441 PF08506 Cse1: Cse1; InterPro 42.0 4.1E+02 0.0089 27.4 15.0 126 365-496 227-370 (370)
442 PLN02400 cellulose synthase 41.7 16 0.00034 42.4 2.0 48 172-219 35-89 (1085)
443 cd00197 VHS_ENTH_ANTH VHS, ENT 41.4 1.6E+02 0.0035 24.3 7.8 70 473-542 38-114 (115)
444 KOG1949 Uncharacterized conser 41.3 5.6E+02 0.012 28.8 13.8 145 352-501 177-331 (1005)
445 KOG2676 Uncharacterized conser 40.9 76 0.0016 32.1 6.2 64 450-513 375-441 (478)
446 cd00730 rubredoxin Rubredoxin; 40.5 13 0.00029 26.0 0.8 14 168-181 29-42 (50)
447 PF13811 DUF4186: Domain of un 40.4 20 0.00043 29.6 1.8 21 185-206 64-87 (111)
448 PF07539 DRIM: Down-regulated 39.6 2.3E+02 0.005 24.7 8.6 30 388-417 15-44 (141)
449 KOG2462 C2H2-type Zn-finger pr 39.5 17 0.00037 35.1 1.6 51 171-221 159-228 (279)
450 KOG1848 Uncharacterized conser 39.1 1.1E+02 0.0024 36.6 8.0 171 349-527 840-1029(1610)
451 cd03565 VHS_Tom1 VHS domain fa 39.0 2.6E+02 0.0057 24.3 9.1 73 265-337 37-115 (141)
452 PF07923 N1221: N1221-like pro 38.6 74 0.0016 31.6 6.1 57 263-319 57-127 (293)
453 PF13251 DUF4042: Domain of un 37.6 3.3E+02 0.0071 25.0 10.1 140 282-421 2-176 (182)
454 PF14663 RasGEF_N_2: Rapamycin 37.3 86 0.0019 26.3 5.4 39 473-512 9-47 (115)
455 COG5183 SSM4 Protein involved 37.1 31 0.00066 38.4 3.2 50 172-221 11-68 (1175)
456 PF06685 DUF1186: Protein of u 37.0 4E+02 0.0086 25.8 12.0 175 350-547 43-230 (249)
457 PF15616 TerY-C: TerY-C metal 36.9 13 0.00027 32.0 0.3 44 169-219 73-116 (131)
458 PF06012 DUF908: Domain of Unk 36.8 1.1E+02 0.0024 31.0 7.1 75 323-397 237-323 (329)
459 PF09889 DUF2116: Uncharacteri 36.7 34 0.00074 24.9 2.4 14 207-220 2-15 (59)
460 PF00301 Rubredoxin: Rubredoxi 36.6 15 0.00032 25.4 0.5 14 168-181 29-42 (47)
461 PRK11088 rrmA 23S rRNA methylt 36.2 19 0.00041 35.3 1.5 26 173-198 2-30 (272)
462 KOG1087 Cytosolic sorting prot 36.0 2.3E+02 0.005 30.2 9.3 69 266-334 38-109 (470)
463 PF04216 FdhE: Protein involve 36.0 5.4 0.00012 39.6 -2.5 44 173-217 172-220 (290)
464 cd00729 rubredoxin_SM Rubredox 35.6 18 0.00039 23.0 0.8 10 208-217 18-27 (34)
465 PF01603 B56: Protein phosphat 35.6 4.5E+02 0.0097 27.5 11.6 228 310-546 135-373 (409)
466 COG1592 Rubrerythrin [Energy p 35.4 24 0.00052 31.7 1.8 12 173-184 134-145 (166)
467 PRK14892 putative transcriptio 34.7 38 0.00082 27.6 2.7 57 168-239 16-72 (99)
468 PF12726 SEN1_N: SEN1 N termin 34.7 3.2E+02 0.0069 31.1 11.1 110 354-465 446-557 (727)
469 KOG2549 Transcription initiati 34.3 5.1E+02 0.011 28.0 11.4 142 351-501 209-370 (576)
470 PRK04023 DNA polymerase II lar 34.1 25 0.00055 40.3 2.1 48 171-221 624-676 (1121)
471 KOG0314 Predicted E3 ubiquitin 33.7 24 0.00051 36.9 1.7 66 169-236 215-284 (448)
472 TIGR01562 FdhE formate dehydro 33.5 11 0.00023 37.6 -0.8 45 172-217 183-233 (305)
473 KOG4231 Intracellular membrane 33.4 25 0.00054 37.1 1.7 61 483-543 339-399 (763)
474 PF11791 Aconitase_B_N: Aconit 33.4 1.1E+02 0.0024 26.9 5.5 82 393-483 40-137 (154)
475 COG0068 HypF Hydrogenase matur 33.3 37 0.0008 37.5 3.1 53 167-219 95-184 (750)
476 PF00412 LIM: LIM domain; Int 33.2 39 0.00084 23.9 2.3 33 171-203 24-57 (58)
477 cd08050 TAF6 TATA Binding Prot 33.0 3.4E+02 0.0074 27.7 10.0 109 350-458 211-338 (343)
478 PF08506 Cse1: Cse1; InterPro 33.0 5.3E+02 0.011 26.6 11.4 128 282-414 227-370 (370)
479 PF06416 DUF1076: Protein of u 32.6 31 0.00067 28.4 1.8 51 170-221 37-93 (113)
480 KOG1428 Inhibitor of type V ad 32.6 29 0.00062 41.3 2.2 49 172-220 3485-3545(3738)
481 PRK05452 anaerobic nitric oxid 32.5 54 0.0012 35.1 4.3 45 166-217 418-467 (479)
482 COG3357 Predicted transcriptio 32.0 1.3E+02 0.0029 23.9 5.1 42 77-119 4-45 (97)
483 cd03565 VHS_Tom1 VHS domain fa 31.9 3.4E+02 0.0073 23.6 8.5 73 472-544 38-116 (141)
484 COG5537 IRR1 Cohesin [Cell div 31.4 3.1E+02 0.0066 30.1 9.2 105 270-377 279-385 (740)
485 KOG2169 Zn-finger transcriptio 31.3 38 0.00083 37.7 2.9 65 169-235 302-372 (636)
486 KOG1832 HIV-1 Vpr-binding prot 30.7 2.2E+02 0.0048 32.6 8.3 121 320-442 365-491 (1516)
487 KOG1609 Protein involved in mR 30.7 38 0.00083 33.9 2.7 49 173-221 78-136 (323)
488 PF03130 HEAT_PBS: PBS lyase H 30.6 40 0.00086 20.0 1.7 26 365-400 1-26 (27)
489 KOG1949 Uncharacterized conser 30.3 8.3E+02 0.018 27.5 17.4 146 311-461 177-332 (1005)
490 PF12783 Sec7_N: Guanine nucle 30.3 3.9E+02 0.0085 23.7 9.4 77 425-503 67-148 (168)
491 PF13240 zinc_ribbon_2: zinc-r 30.2 33 0.00071 19.7 1.2 9 209-217 14-22 (23)
492 KOG4231 Intracellular membrane 30.1 93 0.002 33.0 5.2 64 315-378 335-399 (763)
493 smart00132 LIM Zinc-binding do 29.9 40 0.00086 21.3 1.8 35 175-218 1-37 (39)
494 KOG3476 Microtubule-associated 29.8 7.2 0.00016 30.2 -2.1 37 174-220 55-91 (100)
495 PF14663 RasGEF_N_2: Rapamycin 29.6 1.1E+02 0.0025 25.5 4.9 39 432-470 9-47 (115)
496 PF10083 DUF2321: Uncharacteri 29.6 2.1E+02 0.0045 25.4 6.5 89 193-299 28-119 (158)
497 KOG1791 Uncharacterized conser 29.4 9.8E+02 0.021 29.6 13.5 221 299-542 1430-1659(1758)
498 PF12231 Rif1_N: Rap1-interact 29.0 6.5E+02 0.014 25.9 17.1 133 321-459 59-203 (372)
499 COG5537 IRR1 Cohesin [Cell div 28.9 4.6E+02 0.0099 28.8 10.0 99 401-501 286-386 (740)
500 KOG0891 DNA-dependent protein 28.3 9.3E+02 0.02 31.5 14.0 195 347-542 563-762 (2341)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.2e-29 Score=252.02 Aligned_cols=278 Identities=23% Similarity=0.303 Sum_probs=251.5
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCC-CchH
Q 008835 266 AAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKG 343 (551)
Q Consensus 266 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~ 343 (551)
|.++.++..|.. .++..|.+|+|+|.+++.++.+.-..+++.|+||.|+.+|.+++..+++.|+|+|+|++.+. ..|.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 789999999974 45899999999999999999999999999999999999999999999999999999999984 5588
Q ss_pred HHhhcCCcHHHHHHHhcCCH-HHHHHHHHHHHHhcCCcchhHHhhh-hCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 344 TIVNAGAIPDIVDVLKNGSM-EARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
.+...|++++|+.++...+. ....++.|+|.||+........+.. ..++|.|..++++.++.+..+|+|||.+|+.++
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 88899999999999988764 7788999999999988754333333 479999999999999999999999999999888
Q ss_pred ChHHH-HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh-HHHhhhCCCHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 008835 422 GNKAR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-KTAIGQAEPIPVLMEVIR-TGSPRNRENAAAVLWA 498 (551)
Q Consensus 422 ~~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~-~~~i~~~~~v~~L~~lL~-~~~~~~k~~A~~~L~~ 498 (551)
..+.+ +++.|+++.|+++|...+..++..|+.++.|++...+. .+.+++.|+++.|..++. +....+|..|+|+|.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 77776 66899999999999999999999999999999886554 567788999999999998 4556799999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 499 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 499 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
++.++.++.+.+++.|++|.|+.++++++-+.|+.|+|++.++..
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999998853
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=5.7e-28 Score=279.43 Aligned_cols=280 Identities=23% Similarity=0.262 Sum_probs=253.7
Q ss_pred cHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCC
Q 008835 264 DRAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 340 (551)
....+..+++.|+++ +++.+.+|+..|+.++++++++|..+++ .|+||.|+.+|.++++.++++|+.+|.+|+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 357899999999976 7899999999999999999999999996 7999999999999999999999999999999999
Q ss_pred chHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc---chhHHh-hhhCcHHHHHHHhccCC---hhHHHHHHHH
Q 008835 341 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID---ENKVAI-GAAGAIPALIRLLCDGT---PRGKKDAATA 413 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i-~~~~~i~~Lv~lL~~~~---~~~~~~a~~a 413 (551)
++..|+..|++++|+++|++++++.+++|+++|++|+... .++..+ ...|++|+|+.++++++ ..++..++.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874 445454 45799999999999874 2345677899
Q ss_pred HHHhccCCChHHH-HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCC-HHHHH
Q 008835 414 IFNLSIYQGNKAR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGS-PRNRE 490 (551)
Q Consensus 414 L~nL~~~~~~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~-~~~k~ 490 (551)
|+||+.+++++.. +++.|+|+.|+.+|.++++.++..|+.+|.+++.+ ++++..+++.|+||.|+++|++++ +.+|+
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999999865 68999999999999999999999999999988875 778999999999999999998765 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCC---------hHHHHHHHHHHHHHHh
Q 008835 491 NAAAVLWAICTGDAEQLKIARELDAEEALKELSESGT---------DRAKRKAGSILELLQR 543 (551)
Q Consensus 491 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~---------~~~k~~A~~lL~~l~~ 543 (551)
+|+++|.+||.++++.+..+++.|+++.|+.++.+.+ ...++.|.|+|.++.+
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999997654 3458999999999876
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=3e-27 Score=273.49 Aligned_cols=284 Identities=24% Similarity=0.296 Sum_probs=251.4
Q ss_pred cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCc
Q 008835 262 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 341 (551)
Q Consensus 262 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~ 341 (551)
..+.++++.|+++|.+++...|..|++.|++++..+++++..+++.|+||+|+++|.+++..++++|+|+|.|++.++++
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q 521 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED 521 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH
Confidence 34567999999999999999999999999999998999999999999999999999999999999999999999998766
Q ss_pred hHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh-------------------------------------
Q 008835 342 KGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK------------------------------------- 383 (551)
Q Consensus 342 ~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~------------------------------------- 383 (551)
...++ ..|++++|+++|++++++.++.|+++|++|+...+..
T Consensus 522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 55554 7899999999999999999999999999996432211
Q ss_pred HH-hhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC-hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 384 VA-IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 384 ~~-i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
.. ....|+++.|+++|++++..+++.|+++|.|++.+.. .+..++..|+|++|+.+|.+.+.+++..|.++|.|++..
T Consensus 602 ~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred HHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC
Confidence 00 1124899999999999999999999999999998654 466789999999999999999999999999999999963
Q ss_pred --hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHH
Q 008835 462 --QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 539 (551)
Q Consensus 462 --~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 539 (551)
...+..+++.|+|++|+++|.+.+..+++.|+.+|.+++..+ +....+...|+++.|+.++++|+++.|+.|.++|.
T Consensus 682 ~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~ 760 (2102)
T PLN03200 682 IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALA 760 (2102)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445667789999999999999999999999999999999877 46777888999999999999999999999999999
Q ss_pred HHHhHHH
Q 008835 540 LLQRIDM 546 (551)
Q Consensus 540 ~l~~~~~ 546 (551)
.|.+.+.
T Consensus 761 ~L~~~~~ 767 (2102)
T PLN03200 761 QLLKHFP 767 (2102)
T ss_pred HHHhCCC
Confidence 8876543
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-27 Score=226.26 Aligned_cols=283 Identities=26% Similarity=0.353 Sum_probs=264.5
Q ss_pred cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCc
Q 008835 262 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 341 (551)
Q Consensus 262 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~ 341 (551)
...-.++..|+..+.++..++|+.++.+|.+|+. -+++|..++..|++.+|.++-++++..+|.++..+|.||....++
T Consensus 122 iv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En 200 (550)
T KOG4224|consen 122 IVSLLGLDLLILQMMTDGVEVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN 200 (550)
T ss_pred EEeccChHHHHHHhcCCCcEEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh
Confidence 3445677888888888888999999999999997 488999999999999999988889999999999999999999999
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhC--cHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG--AIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~--~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
|..++..|++|.|++++++++..++..+..++.+++.+..+++.+.+.+ .+|.|++++++++++++-.|.-+|.||+.
T Consensus 201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999886 99999999999999999999999999999
Q ss_pred CCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 008835 420 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWA 498 (551)
Q Consensus 420 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~-~~~k~~A~~~L~~ 498 (551)
..+....++++|.+|.++++|+++........+.++.|++-+|-+...|++.|++.+|+++|+.++ .++|-+|+.+|++
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrn 360 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRN 360 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHH
Confidence 999999999999999999999998888889999999999999999999999999999999999876 6699999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 499 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 499 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
|+..+..++..+.+.|+++.|.+++.++...++..-..++..|.=.+
T Consensus 361 LAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 361 LAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND 407 (550)
T ss_pred HhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence 99988899999999999999999999999999988888888776433
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=3.7e-27 Score=223.07 Aligned_cols=281 Identities=21% Similarity=0.252 Sum_probs=248.2
Q ss_pred ccHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCC-
Q 008835 263 CDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS- 340 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~- 340 (551)
.+.|.++.+++++.+ ...-.+.+|+|.|.+++.+.......++++|+||.++.+|.+++.++++.++|+|+|++.+++
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 345889999999954 444578999999999998877777888999999999999999999999999999999999855
Q ss_pred chHHHhhcCCcHHHHHHHhcCC--HHHHHHHHHHHHHhcCCcchhHHhh-hhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 341 NKGTIVNAGAIPDIVDVLKNGS--MEARENAAATLFSLSVIDENKVAIG-AAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~-~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
.|..+...|++++++.+|.+.. .....++.|+|.||+........-. -+.++|.|.+++.+-++++..+|+|||..|
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 4777889999999999998774 4778899999999997653322222 246899999999999999999999999999
Q ss_pred ccCCChHHH-HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH-HHhhhCCCHHHHHHHHhcCCHHHHHHHHHH
Q 008835 418 SIYQGNKAR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK-TAIGQAEPIPVLMEVIRTGSPRNRENAAAV 495 (551)
Q Consensus 418 ~~~~~~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~-~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~ 495 (551)
+..+..+.. +++.|+.+.|+++|++++..++.-|+..+.|+....+.+ +.+++.|+++.+-.+|.+....+|..|+|+
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 998877765 678999999999999999999999999999999876654 566788999999999998888999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 496 LWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 496 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+.|++.++.+..+++++.+++|+|+.++...+-..|+.|+|++.+...
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999998753
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.1e-26 Score=232.00 Aligned_cols=285 Identities=23% Similarity=0.248 Sum_probs=253.5
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHhcccCCCc
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP-RTQEHAVTALLNLSINDSN 341 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~ 341 (551)
.+.++++.|+.++.+++.+++++|+|+|.+++.+++..|..+.+.|++++|+.++...+. ...+++.|+|.||+.+...
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 456899999999999999999999999999999999999999999999999999998765 7889999999999986532
Q ss_pred hHH-HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 342 KGT-IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 342 ~~~-i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
... -.-..++|.|..+|.+.++++...|+|+|.+|+.... .-..+...|++|.|+++|...+..++..|++++.|+..
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 222 2235689999999999999999999999999996654 44455667999999999999999999999999999999
Q ss_pred CCChHHH-HHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 008835 420 YQGNKAR-AVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 496 (551)
Q Consensus 420 ~~~~~~~-l~~~g~i~~Lv~lL~-~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L 496 (551)
+.+...+ +++.|+++.|..++. ++...++..|++++.|++.. .+..++++++|.+|.|+.+|+++..++|..|++++
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI 388 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI 388 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence 8888776 678999999999998 45666899999999999885 66789999999999999999999999999999999
Q ss_pred HHHhcCC-HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHHh
Q 008835 497 WAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMA 547 (551)
Q Consensus 497 ~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~ 547 (551)
.|++.++ ++...++++.|++++|+.++.-.+.+....+...|+++.+..+.
T Consensus 389 sN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 389 SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred HhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9998765 77889999999999999999888999999999999999776553
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-26 Score=219.12 Aligned_cols=279 Identities=24% Similarity=0.332 Sum_probs=258.0
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
+..|++..+.++-++.+..+|..+...|.+++ +..++|..++.+|++|.||.+++++|+++|+.+.+++.|++.+..+|
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 34478888989778888999999999999998 58899999999999999999999999999999999999999999999
Q ss_pred HHHhhcC--CcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 343 GTIVNAG--AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 343 ~~i~~~g--~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
..+++.+ .++.|+.+++++++.++..|..+|.+|+.+.+++..|.+.|.+|.++++|+++..........++.|++.+
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 9998766 99999999999999999999999999999999999999999999999999988777788888999999999
Q ss_pred CChHHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~-~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
+.|..-++++|++.+|+.+|..++ ++++-+|..+|+||+. +..++..+.+.|+|+.+.+++.+++-.+|+.-.+++..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 999999999999999999998754 5599999999999999 57789999999999999999999999999988888888
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 499 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 499 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
|+-++ .....+.+.|+++.|+.+..+.+.+++..|+.+|-+|..
T Consensus 403 Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 403 LALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 88665 577889999999999999999999999999999999864
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.8e-24 Score=204.95 Aligned_cols=281 Identities=17% Similarity=0.184 Sum_probs=248.7
Q ss_pred cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHhcccC-
Q 008835 262 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSIN- 338 (551)
Q Consensus 262 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~- 338 (551)
..+.+++|.++++|.+++.+++.+++|+|.+++.+++..|..+.+.|++.+++.+|.+. +..+.+++.|.|.||+..
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 35678999999999999999999999999999999999999999999999999999876 457889999999999974
Q ss_pred --CCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch-hHHhhhhCcHHHHHHHhccCChhHHHHHHHHHH
Q 008835 339 --DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 415 (551)
Q Consensus 339 --~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~ 415 (551)
+++...| ..++|.|.+++.+.++++...|+|++.+|+..+.- -..+...|..+.|+++|.+++..++..|++.+.
T Consensus 233 nP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 233 NPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 2334444 34689999999999999999999999999977643 345556799999999999999999999999999
Q ss_pred HhccCCChHHH-HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHH
Q 008835 416 NLSIYQGNKAR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAA 493 (551)
Q Consensus 416 nL~~~~~~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~ 493 (551)
|+....+.+.+ +++.|+++.+-.+|.++...++..|++++.|+.. +.+..+++++.+.+|+|+.+|.+..-.+|..|+
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 99998887765 6789999999999999888999999999999987 467788999999999999999999999999999
Q ss_pred HHHHHHhcCC---HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 494 AVLWAICTGD---AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 494 ~~L~~L~~~~---~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
|++.|..+++ |....++++.|++.+|..++.-.+.++-+-+..+++++-+.
T Consensus 391 WAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 391 WAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 9999998765 78899999999999999999988887888888888777543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.82 E-value=4.7e-18 Score=183.28 Aligned_cols=265 Identities=22% Similarity=0.240 Sum_probs=226.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhc
Q 008835 269 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNA 348 (551)
Q Consensus 269 ~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~ 348 (551)
+.+-.++... ....+.++..|.+++. +......+.+.|+|+.|+++|.+++.++...++++|.+||...+||..|.+.
T Consensus 253 kk~~~l~~kQ-eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3444444433 3455678888999995 7888889999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHH
Q 008835 349 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV 428 (551)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~ 428 (551)
|+++.|++++.+++.++...++.+|+|||.+.+.+..|...|++|.|+.+|.++ ..+..++.+|+|||..++++..+.
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999865 455679999999999999999999
Q ss_pred HcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH
Q 008835 429 RAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL 507 (551)
Q Consensus 429 ~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~ 507 (551)
..++++.+++++.. +++.+...+++++.||+.++.+.+.+.+.|+++.|++..-...+. ...+++.|++.+++...
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLK 485 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHH
Confidence 99999999998766 566667778899999999999999999989999999887654432 24468999999886544
Q ss_pred HHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHHHH
Q 008835 508 KIARELDAEEALKELSESG-TDRAKRKAGSILELLQ 542 (551)
Q Consensus 508 ~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~l~ 542 (551)
..+. +.+..|+.++..+ ++...-.+..+|.+|.
T Consensus 486 ~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 486 ELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 4443 4788888888776 6777888888888885
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=6.5e-18 Score=182.20 Aligned_cols=272 Identities=22% Similarity=0.284 Sum_probs=232.4
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
...+.++.|+..|.+++.+....++..|..|+. ..+|+..+.+.|+||.|++++.+++..++..++++|.|||.+++.|
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R 365 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR 365 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 345789999999999999999999999999996 6779999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc-CChhHHHHHHHHHHHhccCC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~ 421 (551)
..|+..|++|.|+.+|.+++ .+..+..+|.+||.+++++..+...+++|.+++++-+ ++.++...++.++.||+.++
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 99999999999999998764 4567999999999999999999999999999998655 45667778899999999999
Q ss_pred ChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh-hhHHHhhhCCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 008835 422 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAI 499 (551)
Q Consensus 422 ~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~-~~~~~i~~~~~v~~L~~lL~~~-~~~~k~~A~~~L~~L 499 (551)
.+...+.+.|+++.|++....... ...+.++.|++.++ ..+..+. +.|..|+..+..+ +++..-.++++|.||
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 999989999999999998765333 23568999999997 4444443 5788888888775 477888999999999
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHHhhhC--ChHHHHHHHHHHHHHH
Q 008835 500 CTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQ 542 (551)
Q Consensus 500 ~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~lL~~l~ 542 (551)
...+......+.+.++++.|..++..| .+++.-.+..++..+.
T Consensus 519 ~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 519 TIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred ccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 987766677777889999999999877 3456666666666554
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.78 E-value=1.1e-19 Score=140.30 Aligned_cols=72 Identities=53% Similarity=0.943 Sum_probs=63.3
Q ss_pred CCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcC
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNG 241 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~ 241 (551)
+|++|.||||+++|.|||+++|||+|||.||++|+..++.+||.|++++...+++||..++..|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999888999999999999999999999999999999875
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=8.8e-17 Score=169.52 Aligned_cols=279 Identities=22% Similarity=0.249 Sum_probs=227.5
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC---CC
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN---DS 340 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~ 340 (551)
....++..+.+|.+.++.+|-.|...|.++++.+...|..+.+.|+||.||.+|.+.+.+++.+|+++|.||... .+
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 345788999999999999999999999999999999999999999999999999999999999999999999874 35
Q ss_pred chHHHhhcCCcHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccC--------------Chh
Q 008835 341 NKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG--------------TPR 405 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~--------------~~~ 405 (551)
|+-.|.+.++++.++++|+. ++.++++....+|+||++.+..+..|... ++..|.+.+-.+ +..
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 88999999999999999997 68999999999999999998777777644 445555443221 245
Q ss_pred HHHHHHHHHHHhcc-CCChHHHHHH-cCChHHHHHhhcc------CChhhHHHHHHHHHHHhcChh-----h--------
Q 008835 406 GKKDAATAIFNLSI-YQGNKARAVR-AGIVPPLMRFLKD------AGGGMVDEALAILAILASHQE-----G-------- 464 (551)
Q Consensus 406 ~~~~a~~aL~nL~~-~~~~~~~l~~-~g~i~~Lv~lL~~------~~~~~~~~al~~L~nL~~~~~-----~-------- 464 (551)
+...+..+|.|++. ..+.|.+|.+ .|.|..|+..+.. .+...+++|+.+|.||+..-+ .
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 67789999999998 6677888887 6899999998873 677889999999999986322 0
Q ss_pred --------------------HH---------------------HhhhCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcC
Q 008835 465 --------------------KT---------------------AIGQAEPIPVLMEVIR-TGSPRNRENAAAVLWAICTG 502 (551)
Q Consensus 465 --------------------~~---------------------~i~~~~~v~~L~~lL~-~~~~~~k~~A~~~L~~L~~~ 502 (551)
+. .+....+|..-+.+|. +.++.+.|.++++|-||+..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 00 0111123444345554 35588999999999999986
Q ss_pred C----HHHHHHH-HHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 503 D----AEQLKIA-RELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 503 ~----~~~~~~~-~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
. ...+..+ .++.+.+.|+++++++++++.+.+..+|++|+.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR 595 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence 6 2334444 678899999999999999999999999999964
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=3.5e-16 Score=170.97 Aligned_cols=261 Identities=23% Similarity=0.247 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC------------CHHHHHHHHHHHHhcccC-CCchHHHh-hcC
Q 008835 284 RAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST------------DPRTQEHAVTALLNLSIN-DSNKGTIV-NAG 349 (551)
Q Consensus 284 ~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~nLs~~-~~~~~~i~-~~g 349 (551)
+.|+..|..+++ ++++|..+.+.|++..+-+||.-+ +..++..|..+|-||.+. ..||..+. ..|
T Consensus 316 caA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 478888888887 789999999999999998887531 346899999999999885 56677666 589
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--hhHHhhhhCcHHHHHHH-hccCChhHHHHHHHHHHHhcc-CCChHH
Q 008835 350 AIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRL-LCDGTPRGKKDAATAIFNLSI-YQGNKA 425 (551)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~l-L~~~~~~~~~~a~~aL~nL~~-~~~~~~ 425 (551)
++..+|..|.+...++..-.+.+|.|||...+ .+..+.+.|-+..|+.. |+...+...+..+.||+||+. ..+|+.
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 99999999999999999999999999997754 45666667999988875 566667788999999999987 467999
Q ss_pred HHHH-cCChHHHHHhhcc----CChhhHHHHHHHHHHHhc----ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 008835 426 RAVR-AGIVPPLMRFLKD----AGGGMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 496 (551)
Q Consensus 426 ~l~~-~g~i~~Lv~lL~~----~~~~~~~~al~~L~nL~~----~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L 496 (551)
.|.. .|++..||.+|.. ....+++.|-+||.|++. .++.|+.+.+++++..|+..|++.+-.+--+++++|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 8887 6899999999975 345789999999999887 467788999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 497 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 497 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
|||...+++..+.+++.|+++.|..|+.+.+..+.+.++.+|++|-.+.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999986544
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.7e-14 Score=137.58 Aligned_cols=276 Identities=20% Similarity=0.221 Sum_probs=234.4
Q ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHhcccCCCch
Q 008835 266 AAIDALLGKLA--NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 266 ~~i~~Lv~~L~--s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
.+...++..|. ..+.+.....+..++.-+..++.+|..+.+.++.|.+...|... ...+.+.+.+++.-|..+++.|
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 45566666664 45567788888899999988999999999999999999777654 4468888999999988766433
Q ss_pred ----------HHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCC-h---hHH
Q 008835 343 ----------GTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT-P---RGK 407 (551)
Q Consensus 343 ----------~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~-~---~~~ 407 (551)
..|+..|++..|++.|+-+ ++.....++.+|..|+..++.+..|.+.|++..|+.++.+.+ . ...
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 4566788999999999977 688889999999999999999999999999999999998843 2 345
Q ss_pred HHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcC
Q 008835 408 KDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTG 484 (551)
Q Consensus 408 ~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~ 484 (551)
+.++..|..|+..++++..+++.|+.+.++.++.. .++.+.+.++.++..||- .|++...+++.|+-...++-|+..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 67899999999999999999999999999998854 788899999999999987 688888999999999999999865
Q ss_pred C--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 485 S--PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 485 ~--~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
. ..++.+|++.+.|+...+.+++..++..| ++.|+......++.....|..+|+-|.
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 4 67899999999999999988888888886 788888888888778888888888774
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.65 E-value=1.8e-14 Score=138.68 Aligned_cols=194 Identities=23% Similarity=0.290 Sum_probs=173.5
Q ss_pred ccHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCc
Q 008835 263 CDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 341 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~ 341 (551)
.+.+.++.|+..|.+ .+|.++..++..+.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 356789999999984 589999999999999875 789999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 342 KGTIVNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
+..|-. .++.+++...+. +.+++..++.+|.+|+..+++...+. +.++.++.+|..|+..++..++++|.||+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 888743 577777765554 57889999999999999888877774 479999999999999999999999999999
Q ss_pred CCChHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcC
Q 008835 420 YQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASH 461 (551)
Q Consensus 420 ~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~ 461 (551)
++.....++.++++..++.++.. .+.++...++.++.|+..+
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999977 4678899999999999875
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=3.3e-14 Score=136.75 Aligned_cols=226 Identities=22% Similarity=0.237 Sum_probs=188.3
Q ss_pred HhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh
Q 008835 305 AEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 383 (551)
Q Consensus 305 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~ 383 (551)
.+.+.++.|+.+|+. .|+.+++.|+.+++|.+.++.++..|.+.|+++.+..+|.++++.++..|+++|.|+|...+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 556778999999986 5899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhCcHHHHHHHhccC--ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 384 VAIGAAGAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 384 ~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
..|.. +++.+.+...+. +..++..++++|.||+..++.+..+. +.++.++.+|..++..++..++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88754 677777765543 56889999999999998887776665 4799999999999999999999999999999
Q ss_pred hhhHHHhhhCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCH-------------H-HHHHHHHcC-cHHHHHHHhhh
Q 008835 462 QEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDA-------------E-QLKIARELD-AEEALKELSES 525 (551)
Q Consensus 462 ~~~~~~i~~~~~v~~L~~lL~~~-~~~~k~~A~~~L~~L~~~~~-------------~-~~~~~~~~g-~i~~L~~ll~~ 525 (551)
+.....++..+++..++.+++.. +.+....++.+..||..+-. . -...+.+.+ ..+.|..+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h 244 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANH 244 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence 99999999999999999999875 46778889999999864221 1 112222222 55666677777
Q ss_pred CChHHHHHH
Q 008835 526 GTDRAKRKA 534 (551)
Q Consensus 526 ~~~~~k~~A 534 (551)
.++++|.++
T Consensus 245 ~d~ev~~~v 253 (254)
T PF04826_consen 245 PDPEVKEQV 253 (254)
T ss_pred CCHHHhhhc
Confidence 777777664
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.62 E-value=6.4e-14 Score=148.14 Aligned_cols=284 Identities=24% Similarity=0.269 Sum_probs=227.3
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh--hHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCC-
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD--NRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND- 339 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~- 339 (551)
.-+.|+.|+.+|.+...++|.+|+++|+||...... |+..|.+.++||.++++|+. .|.++++....+|+||+.++
T Consensus 273 qlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~ 352 (717)
T KOG1048|consen 273 QLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA 352 (717)
T ss_pred HhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH
Confidence 347899999999999999999999999999988776 99999999999999999987 69999999999999998553
Q ss_pred ------------------------------------------------------CchHHHhh-cCCcHHHHHHHhc----
Q 008835 340 ------------------------------------------------------SNKGTIVN-AGAIPDIVDVLKN---- 360 (551)
Q Consensus 340 ------------------------------------------------------~~~~~i~~-~g~i~~Lv~~L~~---- 360 (551)
+.|.++.+ .|.|+.|+..++.
T Consensus 353 lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~ 432 (717)
T KOG1048|consen 353 LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK 432 (717)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence 12334443 5778888877762
Q ss_pred --CCHHHHHHHHHHHHHhcCCcc-------------------------------h-hHH---------------------
Q 008835 361 --GSMEARENAAATLFSLSVIDE-------------------------------N-KVA--------------------- 385 (551)
Q Consensus 361 --~~~~~~~~aa~~L~~Ls~~~~-------------------------------~-~~~--------------------- 385 (551)
.+....+++.-+|.||+..-+ . +..
T Consensus 433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e 512 (717)
T KOG1048|consen 433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE 512 (717)
T ss_pred ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence 245567889999999874321 0 000
Q ss_pred -hhhhCcHHHHHHHhc-cCChhHHHHHHHHHHHhccCCC-----hHHHH-HHcCChHHHHHhhccCChhhHHHHHHHHHH
Q 008835 386 -IGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQG-----NKARA-VRAGIVPPLMRFLKDAGGGMVDEALAILAI 457 (551)
Q Consensus 386 -i~~~~~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~-----~~~~l-~~~g~i~~Lv~lL~~~~~~~~~~al~~L~n 457 (551)
+....+|.+-..+|. +.+..+.+.++.+|-||+.... .+..+ ....+.++|+++|...++.++..+.++|.|
T Consensus 513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRN 592 (717)
T ss_pred eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhh
Confidence 000124444344444 3467889999999999997653 23334 578899999999999999999999999999
Q ss_pred HhcChhhHHHhhhCCCHHHHHHHHhcCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC-ChHH
Q 008835 458 LASHQEGKTAIGQAEPIPVLMEVIRTGS------PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRA 530 (551)
Q Consensus 458 L~~~~~~~~~i~~~~~v~~L~~lL~~~~------~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~ 530 (551)
|+.+..++..|. .++++.|++.|..+. .++-..++.+|.++...+..+...+.+.+.++.|+.|..+. ++++
T Consensus 593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 999999999988 679999999997543 46677888999999999999999999999999999998776 6799
Q ss_pred HHHHHHHHHHHHhHHHhh
Q 008835 531 KRKAGSILELLQRIDMAV 548 (551)
Q Consensus 531 k~~A~~lL~~l~~~~~~~ 548 (551)
.+.|..+|..|..+.++.
T Consensus 672 ~kaAs~vL~~lW~y~eLh 689 (717)
T KOG1048|consen 672 FKAASSVLDVLWQYKELH 689 (717)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998777653
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.61 E-value=7.6e-16 Score=116.18 Aligned_cols=63 Identities=60% Similarity=0.986 Sum_probs=59.9
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHH
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 236 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 236 (551)
+|.||||+++|.+||+++|||+||+.||.+|+.. +.+||.|+++++..++++|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5789999999999999999999999999999987 67899999999999999999999999987
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.3e-12 Score=124.82 Aligned_cols=265 Identities=16% Similarity=0.229 Sum_probs=219.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHhccc-CCCchHHHhhcCCc
Q 008835 275 LANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSI-NDSNKGTIVNAGAI 351 (551)
Q Consensus 275 L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i 351 (551)
-.+++.....+++..|..+....+ .+.++.+...++.+|.. ++.++....+..+..-+. ++.||..+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 345667778888999888886555 45567788899999865 456666666666666554 78899999999999
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchh----------HHhhhhCcHHHHHHHhccC-ChhHHHHHHHHHHHhcc
Q 008835 352 PDIVDVLKN-GSMEARENAAATLFSLSVIDENK----------VAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSI 419 (551)
Q Consensus 352 ~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~----------~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~ 419 (551)
+.+...|.. |...+...+.|++.-|..+++.+ ..|...|++..|++.++-+ ++.....+..+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999988764 44567788899999988776644 3455568899999999875 57888999999999999
Q ss_pred CCChHHHHHHcCChHHHHHhhcc-CChh---hHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc--CCHHHHHHHH
Q 008835 420 YQGNKARAVRAGIVPPLMRFLKD-AGGG---MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT--GSPRNRENAA 493 (551)
Q Consensus 420 ~~~~~~~l~~~g~i~~Lv~lL~~-~~~~---~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~--~~~~~k~~A~ 493 (551)
.++.+..+.+.|++..|+.++.+ ++.. +...++..|..|+.+.+.+..|++.|+.+.++.++.. .+|.+-+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999987 3333 4567899999999999999999999999999998854 5688999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC--ChHHHHHHHHHHHHHHh
Q 008835 494 AVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQR 543 (551)
Q Consensus 494 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~lL~~l~~ 543 (551)
.++..||-..|++...+++.|+-...++-++.. ...+++.|.++++++.-
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888766 46789999999999953
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.53 E-value=5.2e-12 Score=134.97 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=223.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
...+.|...|.++++.++..+++.|.++..++......+.+.+.++.++.+|.+++..+...|+.+|.+|+.++..-..+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 56788899999999999999999999999887777778888999999999999999999999999999999988887788
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 424 (551)
+..+.+..|..++...+..+|..+..++.+++... +....+...|+++.++..|++.|.-++..++..|..|+..+.+.
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~ 236 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL 236 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence 88888999999999888888999999999998665 55666677799999999999988889999999999999988899
Q ss_pred HHHHHcCChHHHHHhhccC--Ch---h-hHHHHHHHHHHHhcChhhHHHhhh-CCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 008835 425 ARAVRAGIVPPLMRFLKDA--GG---G-MVDEALAILAILASHQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLW 497 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~--~~---~-~~~~al~~L~nL~~~~~~~~~i~~-~~~v~~L~~lL~~~~~~~k~~A~~~L~ 497 (551)
..+.+.|+++.|+.++.+. ++ . +.-..+...++++.... ...... ..++..+..++.+.++..+..|+.++.
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~-~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP-QEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 9999999999999999762 22 1 23344567777877411 111111 245566677777888999999999999
Q ss_pred HHhcCCHHHHHHH-HHc-Cc----HHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 498 AICTGDAEQLKIA-REL-DA----EEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 498 ~L~~~~~~~~~~~-~~~-g~----i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.+|+.. +....+ ... +. +........++..++|..+..+|..+-
T Consensus 316 ~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 316 QIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 999665 444444 333 33 444445566778889999999988883
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.48 E-value=5.4e-13 Score=146.55 Aligned_cols=225 Identities=23% Similarity=0.232 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCc-hHHHhhcCCcHHHHHH
Q 008835 281 EEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSN-KGTIVNAGAIPDIVDV 357 (551)
Q Consensus 281 ~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~-~~~i~~~g~i~~Lv~~ 357 (551)
..++.|..+|.||.+++..|+..+.. .|++..+|..|.+...++......+|.||++. +.| +..+.+.|-+..|+..
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 46788999999999988888888775 59999999999998889999999999999995 444 5566678999999887
Q ss_pred -HhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhh-CcHHHHHHHhccC----ChhHHHHHHHHHHHhcc----CCChHHH
Q 008835 358 -LKNGSMEARENAAATLFSLSVID-ENKVAIGAA-GAIPALIRLLCDG----TPRGKKDAATAIFNLSI----YQGNKAR 426 (551)
Q Consensus 358 -L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~-~~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~----~~~~~~~ 426 (551)
|+...+......+.+||||+... +||..|-.. |++..|+.+|.-. ...+.+.|-.+|.|.+. ..+.|..
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 45555667788899999999775 789888876 9999999999653 45678888899998765 4456667
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 008835 427 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 505 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~ 505 (551)
+.+++++..|+..|++.+..++.+++++||||+. +++.++.+++.|+|+.|..++++.+..+-+-++++|.||....+.
T Consensus 526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 7889999999999999999999999999999987 688999999999999999999999999999999999999887753
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.38 E-value=2.6e-10 Score=122.03 Aligned_cols=274 Identities=16% Similarity=0.143 Sum_probs=218.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHH-Hhh
Q 008835 269 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT-IVN 347 (551)
Q Consensus 269 ~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~-i~~ 347 (551)
+.+...|++.+.+....++..|..+.... ..... ..+..+.|...|.++++.++..+++.|.+++.+++.... +.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 44788888888777778888888877532 22222 557789999999999999999999999999987666444 447
Q ss_pred cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH-H
Q 008835 348 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA-R 426 (551)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~-~ 426 (551)
.+.++.++..|.+++.++...|+.+|.+|+........+...+.+..|..++...+..++..+..++.+++..++... .
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 899999999999999999999999999999988777778788889999999988788888899999999988766555 4
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC--HHHH----HHHHHHHHHHh
Q 008835 427 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS--PRNR----ENAAAVLWAIC 500 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~--~~~k----~~A~~~L~~L~ 500 (551)
+.+.|+++.++..|.+.|.-++..|+.+|..|+..+.+...+.+.|+++.|..++.... |+.. -..+....+++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 66789999999999998888899999999999999999999999999999999997643 3111 12234556666
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 501 TGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 501 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
..++...... -..++..|.+++.++++..+..|...+..+....+
T Consensus 278 ~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 278 RVSPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred hcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6444333211 13466677788888999999999999988865443
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.34 E-value=1e-10 Score=115.24 Aligned_cols=282 Identities=12% Similarity=0.108 Sum_probs=220.6
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC----C---CHHHHHHHHHHHHhcc
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS----T---DPRTQEHAVTALLNLS 336 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----~---~~~~~~~a~~~L~nLs 336 (551)
+.+.++.|.+..+|++.++-.+..+.|.++|+.+.++|..+.+.|+-..++..|+. + +.+....+...|.|-.
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 45788888888899999999999999999999999999999999998888887765 2 2356667777888877
Q ss_pred cC-CCchHHHhhcCCcHHHHHHHhcC--CH--------------------------------------------HHHHHH
Q 008835 337 IN-DSNKGTIVNAGAIPDIVDVLKNG--SM--------------------------------------------EARENA 369 (551)
Q Consensus 337 ~~-~~~~~~i~~~g~i~~Lv~~L~~~--~~--------------------------------------------~~~~~a 369 (551)
.+ ++.+.+.++.|+++.|...+.-+ +. +.++..
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 65 55688888999998777655322 11 123444
Q ss_pred HHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc-CChh-------HHHHHHHHHHHhccCCChHHHHHHcC-ChHHHHHhh
Q 008835 370 AATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPR-------GKKDAATAIFNLSIYQGNKARAVRAG-IVPPLMRFL 440 (551)
Q Consensus 370 a~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~-------~~~~a~~aL~nL~~~~~~~~~l~~~g-~i~~Lv~lL 440 (551)
..+|...+.++..+-.+++.|.+..+++++++ .+.. ..+.++....-|..+++.-..+...| ++..++..+
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 55666666666677777778888888888876 2211 22333444444455666666666655 899999999
Q ss_pred ccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 008835 441 KDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-----GSPRNRENAAAVLWAICTGDAEQLKIARELDA 515 (551)
Q Consensus 441 ~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~-----~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~ 515 (551)
.+.+......+.-+++|+++..+....+++.+.+..|+.+|.. |+.+.+..++.+|.|+.-- ..+...+...|+
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGv 403 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGV 403 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccch
Confidence 9988888888889999999999999999999999999999853 5567788889999999853 356777889999
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 516 EEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 516 i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
.+.++.+++...|++.-+-...|++++..++
T Consensus 404 teaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 9999999999999999999999999988776
No 24
>PRK09687 putative lyase; Provisional
Probab=99.33 E-value=1.1e-10 Score=114.84 Aligned_cols=223 Identities=18% Similarity=0.113 Sum_probs=155.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHhcccCCCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVEL-LSSTDPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
..++.+..++.+.++.++..|++.|..+-.... . ...++|.|..+ +.++++.++..|+.+|+++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 456666666777777777777777777643111 0 11345677766 56677788888888888775322111
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChH
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 424 (551)
...+++.+...+.+.++.++..++++|..+.. ..+++.|+.+|.+.+..++..|+.+|.++....+
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-- 191 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-- 191 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--
Confidence 11234556666777778888888888765532 3478888888888888888888888888833211
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 425 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.+++.|+.+|.+.+..++..|+..|..+-. ..+++.|++.|+++. ++..|+.+|..+...
T Consensus 192 ------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-- 251 (280)
T PRK09687 192 ------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-- 251 (280)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--
Confidence 456778888888888888888888877533 257888999888766 455677777766542
Q ss_pred HHHHHHHHcCcHHHHHHHhh-hCChHHHHHHHHHHH
Q 008835 505 EQLKIARELDAEEALKELSE-SGTDRAKRKAGSILE 539 (551)
Q Consensus 505 ~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~ 539 (551)
-+++.|..++. +++++++++|.+.|.
T Consensus 252 ---------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 ---------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ---------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 37899999996 779999999999875
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.29 E-value=4.9e-11 Score=102.09 Aligned_cols=117 Identities=37% Similarity=0.487 Sum_probs=106.7
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc
Q 008835 303 CIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE 381 (551)
Q Consensus 303 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~ 381 (551)
.+.+.|+++.|+++|.++++.++..++++|.+++.+ ++.+..+...|+++.++.+|.++++.++..++++|.+|+....
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356889999999999999999999999999999987 6778888889999999999999999999999999999998874
Q ss_pred -hhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 382 -NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 382 -~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
....+...|+++.|++++++++..++..++++|.||+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 55666778999999999999999999999999999873
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.28 E-value=1.2e-10 Score=99.57 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=110.0
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 426 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.+++.|+++.|++++.+.+..++..++.+|.+++.. ++....+.+.|+++.++++|.++++.++..|+++|.+|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999998899999999999999997 8888889999999999999999999999999999999999988
Q ss_pred HHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 505 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 505 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.....+.+.|+++.|..++..++.++++.|.++|.+|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999875
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.24 E-value=3.7e-12 Score=86.35 Aligned_cols=39 Identities=38% Similarity=0.911 Sum_probs=31.2
Q ss_pred cccccccCcCCeeccCcccccHHHHHHHHHhCC---CCCCCC
Q 008835 176 CPISLELMKDPVIVSTGQTYERSCIQKWLDAGH---KTCPKT 214 (551)
Q Consensus 176 Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~---~~CP~c 214 (551)
||||+++|++||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998632 469986
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1e-09 Score=109.68 Aligned_cols=268 Identities=20% Similarity=0.207 Sum_probs=203.5
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch
Q 008835 266 AAIDALLGKLANG---NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 266 ~~i~~Lv~~L~s~---~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
..+..+...++.. .....+.|++-|.+++. +...-..+...+.|..||+.|...+.++....+..|..||...+||
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK 338 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK 338 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch
Confidence 3455555555421 23344567788889985 5555666777889999999999999999999999999999999999
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 422 (551)
..|...|.++.|++++....++++......|+|||.+...+.+++..|.+|.|..+|.+.+. ..-|+..|+.++.++.
T Consensus 339 ~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 339 IVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD 416 (791)
T ss_pred HHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH
Confidence 99999999999999999999999999999999999999999999999999999999987653 3357889999999999
Q ss_pred hHHHHHHcCChHHHHHhhccCChhhHHHHH-HHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 423 NKARAVRAGIVPPLMRFLKDAGGGMVDEAL-AILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 423 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al-~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
.+..+....+|+.+++.+-.+...-+..++ +.--|||.+..+.+.+.+..++..|++.--...+.. -..++.|++.
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSq 493 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQ 493 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhh
Confidence 999999999999999988764444344444 444599999888888888778888776543222222 2346677777
Q ss_pred CCHHHHHHHHHcCcHHHHHHHhhhCChHH-HHHHHHHHHHH
Q 008835 502 GDAEQLKIARELDAEEALKELSESGTDRA-KRKAGSILELL 541 (551)
Q Consensus 502 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~-k~~A~~lL~~l 541 (551)
+.......+++. +.-|..++.+.+.+. .-.+...|.+|
T Consensus 494 Heg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL 532 (791)
T KOG1222|consen 494 HEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANL 532 (791)
T ss_pred ccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhc
Confidence 665444444443 566666666664433 34444444444
No 29
>PRK09687 putative lyase; Provisional
Probab=99.23 E-value=6.1e-10 Score=109.70 Aligned_cols=226 Identities=16% Similarity=0.095 Sum_probs=174.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
-.++.|+..|.+.+..++..|++.|..+-. ..+++.+..++.++++.+|..|+++|+.|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 467889999999999999999999987752 24578888999999999999999999998643221
Q ss_pred hhcCCcHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChH
Q 008835 346 VNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 346 ~~~g~i~~Lv~~-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 424 (551)
...+++.|..+ +++.++.++..|+.+|+++....... ...++..+...+.+.+..++..++.+|.++.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------ 156 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC------
Confidence 22356778877 56778999999999999986433211 1235667778888889999999999997653
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 425 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
+..+++.|+.+|.+++..++..|+..|+.+.... ..+++.|+..|.+.++.+|..|+..|..+-..
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-- 222 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-- 222 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCCh--
Confidence 2347899999999999999999999999883321 14678899999999999999999999775432
Q ss_pred HHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 505 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 505 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.+++.|+..+.+++ ++..|..+|..+.
T Consensus 223 ---------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 223 ---------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred ---------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 36777887777766 3455666666553
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=7.3e-09 Score=103.62 Aligned_cols=278 Identities=16% Similarity=0.232 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
...+..|+..|..++.+.....+.-|..|+. -.+|+..+.+.|.|..|++++...+++++...+..|.|+|.+...+..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 4577788888887777777778888888886 567999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHH----------------------------
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALI---------------------------- 396 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv---------------------------- 396 (551)
|+..|.+|.++.+|.+++. ..-|...|+.+|.+++.+..+....+|+.++
T Consensus 382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999987642 1123334444444443333322222222222
Q ss_pred ---------------------------------------------------HHhccC-ChhHHHHHHHHHHHhccCCChH
Q 008835 397 ---------------------------------------------------RLLCDG-TPRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 397 ---------------------------------------------------~lL~~~-~~~~~~~a~~aL~nL~~~~~~~ 424 (551)
..+++. ++.....++.+|+||...+-..
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 222221 2344555666666666665555
Q ss_pred HHHHH-cCChHHHHHhhcc--CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC--CHHHHHHHHHHHHHH
Q 008835 425 ARAVR-AGIVPPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAI 499 (551)
Q Consensus 425 ~~l~~-~g~i~~Lv~lL~~--~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~--~~~~k~~A~~~L~~L 499 (551)
..+++ ...||-+-..|.. ...+++-..+-.++.++........+..+|.|+.++++|+.. +++.--.-+.+...+
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 55554 4667776666654 234555566666777777777777788889999999999863 344444455555566
Q ss_pred hcCCHHHHHHHHH-cCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 500 CTGDAEQLKIARE-LDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 500 ~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
..+. ..+..+++ ...-..|+.++.+.+.++++-+--+|-++.+++.
T Consensus 620 l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 620 LKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 6553 34444444 4566688999999999999888888888876553
No 31
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.20 E-value=1.1e-11 Score=111.22 Aligned_cols=61 Identities=31% Similarity=0.625 Sum_probs=52.5
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHh---------------CCCCCCCCcccccCCCCccchh
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA---------------GHKTCPKTQQTLLHTALTPNYV 228 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~---------------~~~~CP~c~~~l~~~~~~~n~~ 228 (551)
.+..++|.||||++.+++||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 355678999999999999999999999999999999853 2357999999999888887653
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.17 E-value=7.2e-09 Score=106.32 Aligned_cols=275 Identities=13% Similarity=0.098 Sum_probs=204.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHhcccCCCchHHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
....++..|..++..++..|+..|..+...+..........-.++.|...|.+. +...+..++.+|..|...++.|..+
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 356677788888889999999999998765443211111111334555666554 5778888999999999999999988
Q ss_pred hhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccC-ChhHHHHHHHHHHHhccCCC
Q 008835 346 VNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~ 422 (551)
.+.++++.|+.+|+.. +...+.+++-+++-||..++....+...+.|+.|+++++.. .+++.+-++.+|.||...+.
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 8888999999999864 46889999999999999988777777779999999999875 46788899999999987432
Q ss_pred -------hHHHHHHcCChHHHHHhhcc--CChhhHHHHHHH-------HHHHhcC---------------hh--------
Q 008835 423 -------NKARAVRAGIVPPLMRFLKD--AGGGMVDEALAI-------LAILASH---------------QE-------- 463 (551)
Q Consensus 423 -------~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~-------L~nL~~~---------------~~-------- 463 (551)
....|+..|+++.+-.+-.. .|+++.+..-.+ +..+++. |.
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 23457777776655444433 566654432221 1223321 11
Q ss_pred -hHHHhhhC--CCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHH
Q 008835 464 -GKTAIGQA--EPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 539 (551)
Q Consensus 464 -~~~~i~~~--~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 539 (551)
+...+.+. ..+..|+++|.. .++.+..-|+.=|..++...|..+..+-+.|+=..+++++.+.+++++..|..+++
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 22233333 357899999964 45777788888899999998888888889999999999999999999999999988
Q ss_pred HH
Q 008835 540 LL 541 (551)
Q Consensus 540 ~l 541 (551)
.|
T Consensus 422 kl 423 (429)
T cd00256 422 KL 423 (429)
T ss_pred HH
Confidence 76
No 33
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.17 E-value=3.3e-09 Score=104.85 Aligned_cols=278 Identities=14% Similarity=0.090 Sum_probs=214.6
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHH-------HHHHHHHHHHhcc
Q 008835 266 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPR-------TQEHAVTALLNLS 336 (551)
Q Consensus 266 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~-------~~~~a~~~L~nLs 336 (551)
.....+++.+.+. .++...-....+...+ +++..+-.+++.|.+..++.+++. ++.. ....++....-|.
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 3455666666543 3444444555666666 588889999999999999999977 3222 2233333333444
Q ss_pred cCCCchHHHhhcC-CcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc-----CChhHHHHH
Q 008835 337 INDSNKGTIVNAG-AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-----GTPRGKKDA 410 (551)
Q Consensus 337 ~~~~~~~~i~~~g-~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~a 410 (551)
..++....+...+ +++.++..+++.+......++-+++|++..++++..+++.+++..|++.|.. |+.+.+..+
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 5555545555444 8999999999999999999999999999999999999999999999998864 567889999
Q ss_pred HHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChh-hHHHhhhC-CCHHHHHHHHhcCC-HH
Q 008835 411 ATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE-GKTAIGQA-EPIPVLMEVIRTGS-PR 487 (551)
Q Consensus 411 ~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~-~~~~i~~~-~~v~~L~~lL~~~~-~~ 487 (551)
+.||.||..-..|+..++.+|+++.++.++....+.++..-++.++.+....+ ...++.+. ..+..|++.-++++ ..
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG 461 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG 461 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence 99999999999999999999999999999999999999999999998887644 44555544 56778888877766 34
Q ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 488 NRENAAAVLWAICTGD--AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 488 ~k~~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
+--..-..|..+..++ ......+.+.|++..++.++...+-..+..|.-+|-.+...
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 6677778888888764 34556677889999999999888888888888777666543
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.13 E-value=1.7e-09 Score=108.97 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=168.9
Q ss_pred CHHHHHHhhcC--CCHHHHHHHHHHHHhcccCCCchHHHh-h------cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008835 309 AIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIV-N------AGAIPDIVDVLKNGSMEARENAAATLFSLSVI 379 (551)
Q Consensus 309 ~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~-~------~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 379 (551)
.+..++++|+. ++.++....+..+..|..+.+.+..++ . .....++++++.+++..+...|+.+|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 46666666654 588899999999999877655544433 2 23688899999999999999999999999877
Q ss_pred cchhHHhhhhCcHHHHHHHhcc----CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhh-----cc--CChhhH
Q 008835 380 DENKVAIGAAGAIPALIRLLCD----GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFL-----KD--AGGGMV 448 (551)
Q Consensus 380 ~~~~~~i~~~~~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL-----~~--~~~~~~ 448 (551)
......-...+.++.+++.+.+ .+...+..|+.+|.+|...++.|..+.+.|+++.|.+++ .+ .+..++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 6655544446677888888775 334567889999999999999999999999999999999 22 445678
Q ss_pred HHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHhhhC
Q 008835 449 DEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSESG 526 (551)
Q Consensus 449 ~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~-~~~k~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~~ 526 (551)
..++-++|.|+.+++....+...+.|+.|+++++... ..+..-++++|.|+...+++ ....++..|+++.|-.+....
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 8999999999999999999999899999999998754 77888999999999987754 777888888888888877654
Q ss_pred --ChHHHHHHHHHH
Q 008835 527 --TDRAKRKAGSIL 538 (551)
Q Consensus 527 --~~~~k~~A~~lL 538 (551)
++++..--..+-
T Consensus 296 ~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 296 WSDEDLTEDLEFLK 309 (312)
T ss_dssp -SSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 777766554443
No 35
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.4e-09 Score=109.50 Aligned_cols=258 Identities=18% Similarity=0.170 Sum_probs=208.0
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHH-HhhChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHhcccC-CC
Q 008835 265 RAAIDALLGKLANG-NVEEQRAAAGELRLL-AKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSIN-DS 340 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~-~~ 340 (551)
.+.+..|+.-|... ++..|.+|+.+|..+ +-.+.+.-.-+--..+||.|+.+|+++ +.+++.+|+++|.+|+.- +.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 35788888888765 888999999988654 444555444555567899999999985 899999999999999974 77
Q ss_pred chHHHhhcCCcHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 341 NKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
....+++.++||.|++-|.. ...++.+.++.+|..+|..+ ...|.+.|++...+..|+--+..++..|+.+..|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788899999999988765 46889999999999998754 4677888999999999887778899999999999996
Q ss_pred C--CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc----ChhhHHHhhhCCCHHHHHHHHhcCC----HHHH
Q 008835 420 Y--QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGS----PRNR 489 (551)
Q Consensus 420 ~--~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~----~~~~~~~i~~~~~v~~L~~lL~~~~----~~~k 489 (551)
. ++.-..++ .++|.|..+|+..+...++.++-++..++. .++--+.+...|.|.....+|.... ..+.
T Consensus 324 si~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 4 33333344 469999999999888899998888888876 3455677888899999999997542 3455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC
Q 008835 490 ENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG 526 (551)
Q Consensus 490 ~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 526 (551)
.-.+..|..+|++.+-....+...++...|..++...
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 6678888889999888888899999999999888654
No 36
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=6.9e-11 Score=119.23 Aligned_cols=70 Identities=20% Similarity=0.471 Sum_probs=63.8
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHH
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 238 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 238 (551)
..+...+.||||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+.++++.|..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 467788999999999999999999999999999999985 4579999999988889999999999998854
No 37
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.98 E-value=2.8e-10 Score=76.34 Aligned_cols=38 Identities=37% Similarity=0.999 Sum_probs=33.4
Q ss_pred cccccccCcCC-eeccCcccccHHHHHHHHHhCCCCCCCC
Q 008835 176 CPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKT 214 (551)
Q Consensus 176 Cpic~~~~~~P-v~~~cgh~~~~~ci~~~~~~~~~~CP~c 214 (551)
||||.+.+.+| ++++|||+||+.||.+|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57999999999999999997 6889987
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.98 E-value=6.4e-08 Score=110.97 Aligned_cols=238 Identities=20% Similarity=0.181 Sum_probs=126.4
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
+...++.|+..|.+.++.++..|+..|..+.. .++++.|+..|.++++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 44678899999999999999999999987742 356788888898888899998888887763211
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-----------h--hH----HhhhhCcHHHHHHHhccCChhH
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-----------N--KV----AIGAAGAIPALIRLLCDGTPRG 406 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-----------~--~~----~i~~~~~i~~Lv~lL~~~~~~~ 406 (551)
...+.+...|.++++.++..|+.+|..+...+. . +. .++..+..+.|..++.+.+..+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 112344444555555555555555444321100 0 00 0000011223333444444444
Q ss_pred HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh---------------HHH----
Q 008835 407 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG---------------KTA---- 467 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~---------------~~~---- 467 (551)
+..++.+|..+.... ...++.|..++.++++.++..|+..|..+...+.. |..
T Consensus 759 R~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 759 RIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred HHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 444444444432211 11245566666666666666666666555432110 000
Q ss_pred hh---hCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHH
Q 008835 468 IG---QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 539 (551)
Q Consensus 468 i~---~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 539 (551)
+. ....++.|+.+|.+.+..+|..|+.+|..+. .++ ...+.|...+.+.+..+++.|..+|.
T Consensus 831 L~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 831 LAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 00 1123455555555555555555555555431 111 13445555566666666666666554
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=3e-08 Score=99.97 Aligned_cols=221 Identities=19% Similarity=0.165 Sum_probs=164.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh------cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 270 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE------AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
.+++.+ +.+.+.....+..+..+..+++.....+.. .....++++++.++|.-++..|+.+|..+......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 457788888899999988877766655554 2368889999999999999999999999987655544
Q ss_pred HHhhcCCcHHHHHHHhcC----CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHh-----cc--CChhHHHHHHH
Q 008835 344 TIVNAGAIPDIVDVLKNG----SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-----CD--GTPRGKKDAAT 412 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~----~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL-----~~--~~~~~~~~a~~ 412 (551)
.-...+.++.++..|.+. +.+.+..++.+|.+|...+.+|..+.+.++++.++++| .+ .+...+..++-
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 433356778888888763 45667889999999999999999999999999999999 22 24678899999
Q ss_pred HHHHhccCCChHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChh--hHHHhhhCCCHHHHHHHHhc--CCHH
Q 008835 413 AIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQE--GKTAIGQAEPIPVLMEVIRT--GSPR 487 (551)
Q Consensus 413 aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~--~~~~i~~~~~v~~L~~lL~~--~~~~ 487 (551)
+++-|+.+++....+...+.|+.|+++++. ..+.++.-++++|.||...+. ....|+..|+++.+-.+... ++++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 999999999999999999999999999976 678899999999999999765 67777776666555555543 3455
Q ss_pred HHHH
Q 008835 488 NREN 491 (551)
Q Consensus 488 ~k~~ 491 (551)
+.+.
T Consensus 301 l~ed 304 (312)
T PF03224_consen 301 LTED 304 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.95 E-value=2e-07 Score=106.93 Aligned_cols=204 Identities=24% Similarity=0.226 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--------------ChhhHHHHHh------cCCHHHHHHhhcCCCHH
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKR--------------NADNRVCIAE------AGAIPLLVELLSSTDPR 323 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~--------------~~~~r~~i~~------~g~i~~Lv~lL~~~~~~ 323 (551)
....++.|+..|++.++.++..|+..|..+... ++..|...++ .+..+.|+..|.++++.
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~ 729 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHR 729 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHH
Confidence 346788999999999999999998888776421 1112222211 12344555555555666
Q ss_pred HHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCC
Q 008835 324 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT 403 (551)
Q Consensus 324 ~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~ 403 (551)
+|..|+.+|..+. ..+.|...+.+++++++..++.+|..+.... ...++.|..++++.+
T Consensus 730 VR~~Av~aL~~~~-------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d 788 (897)
T PRK13800 730 VRIEAVRALVSVD-------------DVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPD 788 (897)
T ss_pred HHHHHHHHHhccc-------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCC
Confidence 6666655555431 1233444444445555555555444443211 112455555555555
Q ss_pred hhHHHHHHHHHHHhccCCCh---------------HHHHH-------HcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 404 PRGKKDAATAIFNLSIYQGN---------------KARAV-------RAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 404 ~~~~~~a~~aL~nL~~~~~~---------------~~~l~-------~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
+.++..|+.+|.++...... |...+ ....++.|+.+|.+++..++..|+.+|..+...
T Consensus 789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~ 868 (897)
T PRK13800 789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGD 868 (897)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCC
Confidence 55555555555554322110 00000 123567888888888888888888888776222
Q ss_pred hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 008835 462 QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 497 (551)
Q Consensus 462 ~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~ 497 (551)
+ ...+.|...+.+.+..+|..|..+|.
T Consensus 869 ~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 869 P---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred H---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 2 34677788888888999999998875
No 41
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=7.4e-07 Score=94.48 Aligned_cols=275 Identities=17% Similarity=0.224 Sum_probs=206.4
Q ss_pred cHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHhcccCCC
Q 008835 264 DRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~ 340 (551)
.+.+|+.|++.+.+. =++.++.|+..|..+++ .+|..++.. |+++|+..|+.+ |+++...++.+++++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 357999999999754 47889999999999987 466666644 588899999874 89999999999999976542
Q ss_pred -------ch----------HHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chhHHhhhh-CcHHHHHHHh
Q 008835 341 -------NK----------GTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAA-GAIPALIRLL 399 (551)
Q Consensus 341 -------~~----------~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~-~~i~~Lv~lL 399 (551)
.+ +.++ ..+.|..++..+...+-.+|..+...|.+|-... +.+..+... .+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 12 1222 5789999999999999999999999999886554 345555544 8899999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCChHHHHHH-cCChHHHHHhhccC----ChhhHHHHHHHHHHHhcC-hhhHHHhhhCCC
Q 008835 400 CDGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDA----GGGMVDEALAILAILASH-QEGKTAIGQAEP 473 (551)
Q Consensus 400 ~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~-~g~i~~Lv~lL~~~----~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~ 473 (551)
.+..+.++..++..|..|+.+..+..+++. .+++..|..++... ..-+++.|+..|.||-.+ ..++..+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 998888999999999999998888777665 78999999999762 235789999999999884 677888888899
Q ss_pred HHHHHHHHhc---CCH--------HH--HHHHHHHHHHHhcCC------HHHHHHHHHcCcHHHHHHHhhhC--ChHHHH
Q 008835 474 IPVLMEVIRT---GSP--------RN--RENAAAVLWAICTGD------AEQLKIARELDAEEALKELSESG--TDRAKR 532 (551)
Q Consensus 474 v~~L~~lL~~---~~~--------~~--k~~A~~~L~~L~~~~------~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~ 532 (551)
||.|.++|.. ++. ++ -..|..++..+..-+ ..+...+.+.+++..|..++-+. ..++..
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988863 221 11 123444444444322 23335677889999999887665 334444
Q ss_pred HHHHHHHHHH
Q 008835 533 KAGSILELLQ 542 (551)
Q Consensus 533 ~A~~lL~~l~ 542 (551)
.+.-.+..+-
T Consensus 336 esiitvAevV 345 (970)
T KOG0946|consen 336 ESIITVAEVV 345 (970)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 42
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.3e-10 Score=102.73 Aligned_cols=59 Identities=31% Similarity=0.637 Sum_probs=52.3
Q ss_pred CCCCcccccccccCcCCeeccCcccccHHHHHHHHHh--CCCCCCCCcccccCCCCccchh
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLHTALTPNYV 228 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~--~~~~CP~c~~~l~~~~~~~n~~ 228 (551)
.-..|.|.||++.-+|||++.|||-||+.||.+|+.. +...||+|+..++...++|-+.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3467999999999999999999999999999999985 4467899999999999888654
No 43
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.90 E-value=5.4e-10 Score=106.28 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=62.1
Q ss_pred CCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 238 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 238 (551)
.+..-++|-||.++|.-|+++|||||||.-||..++.. +..||.|..+++...++.|+.+..+|+.+..
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 34566899999999999999999999999999999985 7789999999999999999999999987643
No 44
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1e-09 Score=103.18 Aligned_cols=55 Identities=20% Similarity=0.520 Sum_probs=48.1
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCC
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 223 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~ 223 (551)
...+..+.|.+|++.+.+|-.+||||.||+.||..|+.+ ...||.||.++++..+
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 345567999999999999999999999999999999986 4559999999877654
No 45
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.9e-07 Score=90.39 Aligned_cols=184 Identities=18% Similarity=0.181 Sum_probs=152.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCcHHHH
Q 008835 277 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIV 355 (551)
Q Consensus 277 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv 355 (551)
+.+++.+..|+..|..++. +-+|...+...|+.++++.++.+.+..+|+.|+++++..+.+ +..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4578899999999999994 788999999999999999999999999999999999999875 66688899999999999
Q ss_pred HHHhcC-CHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhcc--CChhHHHHHHHHHHHhccCCCh-HHHHHHc
Q 008835 356 DVLKNG-SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCD--GTPRGKKDAATAIFNLSIYQGN-KARAVRA 430 (551)
Q Consensus 356 ~~L~~~-~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~-~~~l~~~ 430 (551)
..|.+. +..++..|+.++.+|-.+. .....+...+++..|.+.+.+ .+.+.+..++..+.+|...... ...+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999866 4678899999999998775 456667777789999999998 4677888899999998875443 3344456
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 431 GIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 431 g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
|....++.+....+.++.+.++..+..+...
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 7777777777777888888888777666553
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.85 E-value=1.3e-09 Score=73.66 Aligned_cols=36 Identities=31% Similarity=0.814 Sum_probs=23.4
Q ss_pred cccccccCcC----CeeccCcccccHHHHHHHHHhC---CCCCC
Q 008835 176 CPISLELMKD----PVIVSTGQTYERSCIQKWLDAG---HKTCP 212 (551)
Q Consensus 176 Cpic~~~~~~----Pv~~~cgh~~~~~ci~~~~~~~---~~~CP 212 (551)
||||.+ |.+ |+.++|||+||+.|++++.+.+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999964 45676
No 47
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.81 E-value=3.4e-09 Score=72.09 Aligned_cols=39 Identities=44% Similarity=1.113 Sum_probs=36.4
Q ss_pred cccccccCcCCe-eccCcccccHHHHHHHHH-hCCCCCCCC
Q 008835 176 CPISLELMKDPV-IVSTGQTYERSCIQKWLD-AGHKTCPKT 214 (551)
Q Consensus 176 Cpic~~~~~~Pv-~~~cgh~~~~~ci~~~~~-~~~~~CP~c 214 (551)
||||.+.+.+|+ +++|||+||+.|+.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 567789987
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.80 E-value=9.1e-07 Score=88.06 Aligned_cols=274 Identities=15% Similarity=0.108 Sum_probs=204.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcC-CHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 268 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAG-AIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 268 i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g-~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
...++.+|..+++-....+.+.|..++..+.. +....+.. ....|-..+++ .+.+....|+++|-.+...++.|..+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 56788889888988888888988888764331 11111111 12234445555 67788889999999999999999999
Q ss_pred hhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccC-ChhHHHHHHHHHHHhccCCC
Q 008835 346 VNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~ 422 (551)
+..+++..++..+.++ +..++....-+++-|+.++.....+...+.|+.|.+++++. .+++.+-.+.++.|+....+
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999433 68899999999999999998888887679999999999875 46788889999999998763
Q ss_pred -------hHHHHHHcCChHHHHHhhcc--CChhhHHHHHHH-------HHHHhcChh-----------------------
Q 008835 423 -------NKARAVRAGIVPPLMRFLKD--AGGGMVDEALAI-------LAILASHQE----------------------- 463 (551)
Q Consensus 423 -------~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~-------L~nL~~~~~----------------------- 463 (551)
....|+..++.+.+-.+-.. .|+++++..-.+ ...|++..+
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~ 354 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR 354 (442)
T ss_pred hhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH
Confidence 22346666665555444433 455554432222 222333211
Q ss_pred -hHHHhhhC--CCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHH
Q 008835 464 -GKTAIGQA--EPIPVLMEVIRTGS-PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 539 (551)
Q Consensus 464 -~~~~i~~~--~~v~~L~~lL~~~~-~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 539 (551)
+...+.+. ..+..|+.+|+..+ |..-.-|+.=+.......|+....+.+.|+=+.++.++.+.+++++-.|..+++
T Consensus 355 eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 22233333 46899999999766 777888888899999999999999999999999999999999999999999888
Q ss_pred HHH
Q 008835 540 LLQ 542 (551)
Q Consensus 540 ~l~ 542 (551)
.|-
T Consensus 435 ~lm 437 (442)
T KOG2759|consen 435 KLM 437 (442)
T ss_pred HHH
Confidence 764
No 49
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.79 E-value=4.9e-09 Score=98.75 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=40.5
Q ss_pred CCCcccccccccCcCC--------eeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 171 PDDFRCPISLELMKDP--------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P--------v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.++..||||++.+.+| ++++|||+||+.||.+|+.. ..+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4567899999987664 45689999999999999984 778999998775
No 50
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.78 E-value=2.8e-07 Score=92.17 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=195.3
Q ss_pred ccHHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCC
Q 008835 263 CDRAAIDALLGKLANGNVEE--QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND 339 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~--~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~ 339 (551)
...+.+..|+.++.+++.+. +.+|.+.|..+. ..+|++.++.-| ...++.+-+. ..++.++..+.+|.+|.+++
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 35678899999999888665 788888888776 467888888877 4444444433 46788999999999999875
Q ss_pred -CchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHH
Q 008835 340 -SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 416 (551)
Q Consensus 340 -~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~n 416 (551)
+....++..|+++.++-..+..++.+..+++-+|.|++... ..+..|++..+-..|+.+..+.++-.+..|+.+.+-
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 44667889999999999999999999999999999998764 578889999888999988888888889999999999
Q ss_pred hccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 008835 417 LSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 496 (551)
Q Consensus 417 L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L 496 (551)
|+.+.+....+...|.+..+-.++.+-++..-.. .-.....++ ...-+..|+.+|++...+.+..++.-+
T Consensus 334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 334 LATNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 9998888777778887766666665545432111 001111111 113578888899855444444443333
Q ss_pred HHHhc-CCHHH-HHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 497 WAICT-GDAEQ-LKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 497 ~~L~~-~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+.=+. .+.+. ...+.+-|+|+.|-++..+.+.-...-|.++|..+.+
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 22111 11122 2344566999999999998888888889999998864
No 51
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.76 E-value=5.3e-09 Score=74.40 Aligned_cols=47 Identities=30% Similarity=0.657 Sum_probs=40.8
Q ss_pred CCcccccccccCcCCeeccCccc-ccHHHHHHHHHhCCCCCCCCccccc
Q 008835 172 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
+++.|+||++...++++.+|||. ||..|+.+|+. ....||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999998 5788999998874
No 52
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.75 E-value=6.3e-07 Score=97.45 Aligned_cols=218 Identities=21% Similarity=0.251 Sum_probs=114.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 346 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 346 (551)
.+..+...|.++++..+..|++.|.++. +++.... .++.+.+++.++++.+|..|+.++..+....+. .+.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHH
Confidence 5566666777777777777777777766 2322222 356677777777777777777777776543111 111
Q ss_pred hcCCcHHHHHHHhcCCHHHHHHHHHHHHHh-cCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH
Q 008835 347 NAGAIPDIVDVLKNGSMEARENAAATLFSL-SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~L-s~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 425 (551)
.. .++.+..+|.+.++.+...|+.++..+ ...+... -.-...+..|.+++...++-.+..++..|..++.......
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 12 466777777777777777777777776 1111111 0011233333333444555555566666665554332222
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 426 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
.- ..+++.+..++.+.++.++-.|+.++..+...+. .-..+++.|..+|.+.++.++-.++..|..++...
T Consensus 228 ~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 228 DK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred hH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 00 3344555555555455555555555555544433 11134455555555444555555555555555444
No 53
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.75 E-value=2.4e-09 Score=77.25 Aligned_cols=59 Identities=25% Similarity=0.540 Sum_probs=33.8
Q ss_pred CCcccccccccCcCCee-ccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHH
Q 008835 172 DDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLI 233 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i 233 (551)
+-++|++|.++|+.||. ..|.|.||+.||.+.+. ..||+|..|....++..|..+.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 45789999999999996 69999999999987554 3499999999999999999998876
No 54
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.6e-06 Score=81.53 Aligned_cols=270 Identities=19% Similarity=0.236 Sum_probs=191.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..-.++.+|.+.+|.++..|+..+..++.. ..+.+... .-.++.+.+++...++ .+.|+++|.|++.++.-+..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 355788999999999999999999988864 34444432 3578889999988766 788999999999999888888
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh------CcHHHHHHHhcc-C-Ch-hHHHHHHHHHHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA------GAIPALIRLLCD-G-TP-RGKKDAATAIFN 416 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~------~~i~~Lv~lL~~-~-~~-~~~~~a~~aL~n 416 (551)
+.. .+..++.++.++........+.+|.||+..++....+... ..+..++..+.+ + +. .-...-+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 866 8888999988887777788899999999988654443321 234444444333 2 21 234456778899
Q ss_pred hccCCChHHHHHHcCChH--HHHHhhccCChhhH-HHHHHHHHHHhcChhhHHHhhhC--CCHHHHH-------------
Q 008835 417 LSIYQGNKARAVRAGIVP--PLMRFLKDAGGGMV-DEALAILAILASHQEGKTAIGQA--EPIPVLM------------- 478 (551)
Q Consensus 417 L~~~~~~~~~l~~~g~i~--~Lv~lL~~~~~~~~-~~al~~L~nL~~~~~~~~~i~~~--~~v~~L~------------- 478 (551)
|+....+|..+.....++ .|+.+ ++.+..++ ...+++|.|.|........+.+. +.+|.++
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 999999998877655322 33333 33333333 45788999988876655554442 1222222
Q ss_pred --------HHHh-----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHHHHh
Q 008835 479 --------EVIR-----TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 543 (551)
Q Consensus 479 --------~lL~-----~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~l~~ 543 (551)
++|- ..++.++..-+.+|..||... ..+..+.+.|+.+.|-++-... ++++.++...+.+++.+
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 3332 245788999999999999755 5778888899888888876554 67778888888888876
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=9.5e-07 Score=86.82 Aligned_cols=180 Identities=20% Similarity=0.218 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC-hHHHHHHcCChHHHHHhh
Q 008835 362 SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFL 440 (551)
Q Consensus 362 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~i~~Lv~lL 440 (551)
+.+-++.|..-|..+..+-++...+...|+..+++..+.+++..++..|+++|...+.+.+ .+..+.+.|+.+.|+..|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 6777888888888888888899999999999999999999999999999999999988654 556788999999999999
Q ss_pred cc-CChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcH
Q 008835 441 KD-AGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAE 516 (551)
Q Consensus 441 ~~-~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i 516 (551)
+. .+..++..|+.++..|-.+ +.+...+...++...|...|++ .+...+..|+..+..|..........+...|..
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 86 4455668999999999985 7788899998999999999998 458889999999999998887777878888888
Q ss_pred HHHHHHhhhCChHHHHHHHH-HHHHH
Q 008835 517 EALKELSESGTDRAKRKAGS-ILELL 541 (551)
Q Consensus 517 ~~L~~ll~~~~~~~k~~A~~-lL~~l 541 (551)
..+..+....+..+...|.. +|..+
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHH
Confidence 89999998888888877765 33333
No 56
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.73 E-value=9.8e-08 Score=80.04 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=137.0
Q ss_pred hhhhCcHHHHHHHhcc-CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh
Q 008835 386 IGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG 464 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~ 464 (551)
+...+.+..|+.-..+ .+.+.++....-|+|.+.++-|-..+.+.+++...+..|...+..+++.+++.|+|+|-.+.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 3444677888876665 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 465 KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 465 ~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
...|.+.+++|.++..+.++...+-..|+.+|..||..+...+.++...-++..+.....+...+.+.-|...|.-.
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999999988888889999999999998888888888888888888887777777777777766543
No 57
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.70 E-value=1.1e-06 Score=95.48 Aligned_cols=256 Identities=18% Similarity=0.187 Sum_probs=184.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..++.+...+.++++.++..|+.++..+.+.+++. +... .++.+.++|.+.++.++..|+.++..+ ..++....-
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~ 188 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh
Confidence 46677888888999999999999999999876643 2222 589999999999999999999999999 111111001
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 425 (551)
.-...+..|..++...++-.+...+.+|..++........- ...++.+..++++.++.+...++.++.++.....
T Consensus 189 ~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--- 263 (526)
T PF01602_consen 189 LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--- 263 (526)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH---
T ss_pred hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH---
Confidence 11234555555666778999999999999887655332211 4578888889988888999999999998877554
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCH
Q 008835 426 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-TGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~-~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.-..+++.|..++.+.++.++..++..|..++... ...+. .....+..+. +.+..+|..++.+|..++...
T Consensus 264 --~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~- 335 (526)
T PF01602_consen 264 --LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANES- 335 (526)
T ss_dssp --HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH-
T ss_pred --HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccccc-
Confidence 44567889999999888889999999999998854 22222 2333344555 677889999999999999633
Q ss_pred HHHHHHHHcCcHHHHHHHhh-hCChHHHHHHHHHHHHHHhHH
Q 008835 505 EQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 505 ~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~l~~~~ 545 (551)
+... +++.|...+. .+++..++.+...+..+....
T Consensus 336 -n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 336 -NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp -HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred -chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 3333 5666777774 447778888888777776543
No 58
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=9.6e-09 Score=89.68 Aligned_cols=54 Identities=24% Similarity=0.661 Sum_probs=44.8
Q ss_pred CCCcccccccccCcC--CeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCcc
Q 008835 171 PDDFRCPISLELMKD--PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 225 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~--Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 225 (551)
..-|.||||++-+.. ||.+.|||.||+.||...++. ...||.|++.+....+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 345999999998864 667899999999999999986 566999999888766543
No 59
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.67 E-value=1.1e-08 Score=70.66 Aligned_cols=40 Identities=38% Similarity=0.927 Sum_probs=33.8
Q ss_pred ccccccccCc---CCeeccCcccccHHHHHHHHHhCCCCCCCCc
Q 008835 175 RCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQ 215 (551)
Q Consensus 175 ~Cpic~~~~~---~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~ 215 (551)
.||||++.+. .++.++|||.|+..||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999884 4556899999999999999997 56899996
No 60
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.63 E-value=1.2e-05 Score=82.97 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=175.9
Q ss_pred CCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHHh-h-----cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 008835 308 GAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIV-N-----AGAIPDIVDVLKNGSMEARENAAATLFSLSVID 380 (551)
Q Consensus 308 g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~-~-----~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~ 380 (551)
..+..++.+|+. .+.++....+..+..|..+.+.+.... + .+...+++.+|.+++.-+...|+.+|..|....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 467788888876 467788888888887776655544333 2 456788999999888889999999999886543
Q ss_pred chh-HHhhhhCcHHHHHHHhccC-ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccC--ChhhHHHHHHHHH
Q 008835 381 ENK-VAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA--GGGMVDEALAILA 456 (551)
Q Consensus 381 ~~~-~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~al~~L~ 456 (551)
... ......-.+..|...|+++ +...+.-++.+|.+|...++.|..+.+.++++.|+++|+.. +..++..++-++|
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 211 1000011334555666654 46778888999999999999999999999999999999762 4577889999999
Q ss_pred HHhcChhhHHHhhhCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCC------HHHHHHHHHcCcHHHHHHHhhhC--C
Q 008835 457 ILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAICTGD------AEQLKIARELDAEEALKELSESG--T 527 (551)
Q Consensus 457 nL~~~~~~~~~i~~~~~v~~L~~lL~~~~-~~~k~~A~~~L~~L~~~~------~~~~~~~~~~g~i~~L~~ll~~~--~ 527 (551)
-|+.++++...+...+.|+.++++++... ..+-.-++.+|.|+...+ ......+++.|+++.+..|...+ +
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D 292 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDD 292 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCc
Confidence 99999888777777899999999998755 667788999999998743 23456677888877777776554 6
Q ss_pred hHHHHHHHHHHHHHHh
Q 008835 528 DRAKRKAGSILELLQR 543 (551)
Q Consensus 528 ~~~k~~A~~lL~~l~~ 543 (551)
+++..-...+-..|.+
T Consensus 293 edL~edl~~L~e~L~~ 308 (429)
T cd00256 293 EDLTDDLKFLTEELKN 308 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666655544
No 61
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.62 E-value=1.7e-08 Score=94.17 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=58.9
Q ss_pred CCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHH
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 238 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 238 (551)
+..-++|-||.+.++-|+.++||||||.-||..++.. +..||.|+.+.....+..+..++..++.+..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 4456799999999999999999999999999999985 6779999999888878888888877776643
No 62
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.61 E-value=3.6e-07 Score=76.72 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=127.1
Q ss_pred CCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHH
Q 008835 349 GAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARA 427 (551)
Q Consensus 349 g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l 427 (551)
+.+..|+.-.... +.++++...+-|.|++.++.|-..+.+..++..+++-|...+....+.+...|+|+|.++.|...+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 4556666666544 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh-hhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 428 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 428 ~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~-~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
+++++++..+..++++...++..|+..+..|+... .-+..+....++..+.+.-.+.+.+.+.-|-..|-..|
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999864 45777776666666666655566666666665555444
No 63
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.58 E-value=5.3e-08 Score=67.44 Aligned_cols=43 Identities=44% Similarity=1.034 Sum_probs=38.3
Q ss_pred ccccccccCcCCeecc-CcccccHHHHHHHHHhCCCCCCCCccc
Q 008835 175 RCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQT 217 (551)
Q Consensus 175 ~Cpic~~~~~~Pv~~~-cgh~~~~~ci~~~~~~~~~~CP~c~~~ 217 (551)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888765 999999999999999877889999864
No 64
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.4e-07 Score=83.75 Aligned_cols=78 Identities=35% Similarity=0.500 Sum_probs=71.6
Q ss_pred CCCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcCCC
Q 008835 166 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 243 (551)
Q Consensus 166 ~~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 243 (551)
....+|+.++|.|+.++|++||+.|+|-||.|.-|.+++..-.+.-|.++.++....++||.+++..|..|...|++.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 345789999999999999999999999999999999999976666999999999999999999999999999988763
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.53 E-value=3.2e-08 Score=71.68 Aligned_cols=44 Identities=34% Similarity=0.787 Sum_probs=31.4
Q ss_pred CCcccccccccCcCCee-ccCcccccHHHHHHHHH-hCCCCCCCCc
Q 008835 172 DDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLD-AGHKTCPKTQ 215 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~-~~~~~CP~c~ 215 (551)
-.+.|||++..|.+||. ..|||+|++..|.+|+. .+...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 46899999999999998 59999999999999994 3456799843
No 66
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.3e-07 Score=98.96 Aligned_cols=55 Identities=20% Similarity=0.485 Sum_probs=50.1
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCcc
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 225 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 225 (551)
.+-++||.|..-+.|-|++.|||.||..||+..+....+.||.|+..|...++.+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 4567899999999999999999999999999999988999999999998777654
No 67
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4e-06 Score=89.67 Aligned_cols=215 Identities=16% Similarity=0.190 Sum_probs=171.7
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCch
Q 008835 265 RAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 265 ~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
...++.|+.+|+. .+++++..|+++|.+|+.--+.....+++.++||.|+.-|.. ...++.+.++.+|-.|+... -
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~ 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--P 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--c
Confidence 4689999999985 469999999999999999889999999999999999976654 68899999999999998632 2
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
..|.++|++-..+.+|.--+.-++..|.++..|.|..- +.-..+ ..++|.|..+|...+.+..+.++.++..++..
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 46779999999999999888899999999999988542 222222 25899999999999999999988888887642
Q ss_pred ----CChHHHHHHcCChHHHHHhhccC----ChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhc
Q 008835 421 ----QGNKARAVRAGIVPPLMRFLKDA----GGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRT 483 (551)
Q Consensus 421 ----~~~~~~l~~~g~i~~Lv~lL~~~----~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~ 483 (551)
++--.++...|.|....++|.-. +..+....+..|..+|+. +.....+...+....|..+|..
T Consensus 366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 23334688899999999998653 234455567777777776 7777777777888888887753
No 68
>PHA02926 zinc finger-like protein; Provisional
Probab=98.50 E-value=8e-08 Score=87.18 Aligned_cols=50 Identities=18% Similarity=0.476 Sum_probs=40.2
Q ss_pred CCCCcccccccccCcC---------CeeccCcccccHHHHHHHHHhC-----CCCCCCCccccc
Q 008835 170 IPDDFRCPISLELMKD---------PVIVSTGQTYERSCIQKWLDAG-----HKTCPKTQQTLL 219 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~---------Pv~~~cgh~~~~~ci~~~~~~~-----~~~CP~c~~~l~ 219 (551)
...+..|+||++...+ ++..+|||+||..||.+|.+.. ..+||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3467889999998643 3567999999999999999852 356999998775
No 69
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.50 E-value=1.2e-07 Score=63.35 Aligned_cols=39 Identities=56% Similarity=1.207 Sum_probs=36.1
Q ss_pred cccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCC
Q 008835 176 CPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKT 214 (551)
Q Consensus 176 Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c 214 (551)
||||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789986
No 70
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=8.2e-06 Score=90.60 Aligned_cols=236 Identities=20% Similarity=0.234 Sum_probs=160.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~ 344 (551)
...+.+-.+|.|.+|..+..|+..|..++.+..+.-.... ..+++..++.|+++++.+|..|+.+++.++.+ ...-..
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 3556677788899999999999999999976654333211 25788889999999999999999999999987 333333
Q ss_pred HhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHhhh--hCcHH-HHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 345 IVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGA--AGAIP-ALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~~~i~-~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
-...-.++.|+..+.+. ++.++.+|+.++.|++..... ..+.. .+.+. .|..++.++++.+++.++.+|+..+..
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 33455777899998876 689999999999999865432 22221 14444 333355677899999999999999876
Q ss_pred CChHHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhc--ChhhHHHhhhC--CCHHHHHHH---HhcCCHHHHHHH
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILAS--HQEGKTAIGQA--EPIPVLMEV---IRTGSPRNRENA 492 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~-~~~~~~al~~L~nL~~--~~~~~~~i~~~--~~v~~L~~l---L~~~~~~~k~~A 492 (551)
.+..-.-.-...+|.|.++|...+ .+.+.....++.+++. ..-|++.+... .++..+..+ ....++..+..-
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 554433333456888888887744 4555554444444433 23344554432 344444444 223346677888
Q ss_pred HHHHHHHhcCC
Q 008835 493 AAVLWAICTGD 503 (551)
Q Consensus 493 ~~~L~~L~~~~ 503 (551)
.....++|..-
T Consensus 586 ~~~warmc~il 596 (1075)
T KOG2171|consen 586 IAFWARMCRIL 596 (1075)
T ss_pred HHHHHHHHHHh
Confidence 88888888743
No 71
>PTZ00429 beta-adaptin; Provisional
Probab=98.47 E-value=4e-05 Score=84.93 Aligned_cols=257 Identities=14% Similarity=0.112 Sum_probs=179.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
......+..+.+.+.+.++-+...|.+.++.+++... -++..|.+-+.++|+.+|-.|+++|+++-.. .+
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i 137 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV 137 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH
Confidence 3566667777888888887777777777765554322 2367888889999999999999999987431 11
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 425 (551)
+ .-.++.+.+.|.+.++.+|..|+-++..+-..+. ..+...+.++.|.++|.+.++.+...|+.+|..+....+...
T Consensus 138 ~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 138 L-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 1 2245667777888899999999999999854432 334456889999999999999999999999999986554332
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-H
Q 008835 426 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-A 504 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~ 504 (551)
-...+.+..|+..|.+.++..+-..+.+|... .|...... ...+..+...|++.++.+.-.|+.+++++.... +
T Consensus 215 -~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 -ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred -HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 23456677788888777777777777777442 22222221 246777888888888999999999999987643 2
Q ss_pred HHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 505 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 505 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.....+. ..+..+|+.| .+++++++--+...|..+.
T Consensus 290 ~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 290 ELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence 2222211 1133555555 3566777777776665554
No 72
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=6.8e-06 Score=87.40 Aligned_cols=212 Identities=19% Similarity=0.169 Sum_probs=167.6
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcc-----
Q 008835 310 IPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDE----- 381 (551)
Q Consensus 310 i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~----- 381 (551)
|+.|+.-+.+ .-.+-|+.|+..|..+|. .+|..+. .-|+++|+.+|..+ ++++...++.++.++...++
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 4455544443 346678999999998874 3444443 45799999999876 79999999999999876653
Q ss_pred --hh----------H-HhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH--H-HHHcCChHHHHHhhccCCh
Q 008835 382 --NK----------V-AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA--R-AVRAGIVPPLMRFLKDAGG 445 (551)
Q Consensus 382 --~~----------~-~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~--~-l~~~g~i~~Lv~lL~~~~~ 445 (551)
.+ . .|...+.|..|+..+...+..++..+...|.+|-.+.+... . ++..-+|..|+.+|.+...
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 11 1 12233899999999999999999999999999987665433 3 4456789999999999889
Q ss_pred hhHHHHHHHHHHHhcChhhHHHhhh-CCCHHHHHHHHhc-C-C--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHH
Q 008835 446 GMVDEALAILAILASHQEGKTAIGQ-AEPIPVLMEVIRT-G-S--PRNRENAAAVLWAICTGDAEQLKIARELDAEEALK 520 (551)
Q Consensus 446 ~~~~~al~~L~nL~~~~~~~~~i~~-~~~v~~L~~lL~~-~-~--~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 520 (551)
.++..++-.|..|+......+.++. .+++..|+.++.. | . .-+-+.|..+|.||-.++..+...+.+.+.++.|.
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~ 260 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLL 260 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHH
Confidence 9999999999999997766665554 5899999999975 2 2 35788999999999999999999999999999999
Q ss_pred HHhh
Q 008835 521 ELSE 524 (551)
Q Consensus 521 ~ll~ 524 (551)
.++.
T Consensus 261 klL~ 264 (970)
T KOG0946|consen 261 KLLS 264 (970)
T ss_pred hhcC
Confidence 7763
No 73
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.4e-08 Score=94.51 Aligned_cols=71 Identities=24% Similarity=0.438 Sum_probs=62.5
Q ss_pred CCCCCcccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCccccc-CCCCccchhhHHHHHHHHHh
Q 008835 169 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLL-HTALTPNYVLKSLIALWCEN 239 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~-~~~~~~n~~l~~~i~~~~~~ 239 (551)
.+..++.||||+.+++..+++ .|+|.||+.||.+-+..|++.||.||+.+. ...+.++.....+|.++...
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 466789999999999998876 699999999999999999999999999975 66788888889999887543
No 74
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.43 E-value=1.7e-05 Score=83.20 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=113.3
Q ss_pred CChhHHHHHHHHHHHhccCCC-hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHH
Q 008835 402 GTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLME 479 (551)
Q Consensus 402 ~~~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~ 479 (551)
.+......|+-.+.+++..-. -+..+-...+..+|++++.+++..+...++++|.|+.. ...-+..++..|+|..+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 455666666666666654221 11124456789999999999999999999999999988 4778999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-cHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 480 VIRTGSPRNRENAAAVLWAICTGDAEQLKIARELD-AEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 480 lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
++.+..+..+..+.++|.++..+..+..+...-.. ....+..+..+.+..+++.+-.+||+|..
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998866555444443 34566778889999999999999999964
No 75
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=6.5e-06 Score=86.00 Aligned_cols=263 Identities=16% Similarity=0.149 Sum_probs=181.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH-h---cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCc
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA-E---AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 341 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~-~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~ 341 (551)
..++.|..+|.+.+...++-|..+|..++.++.+.-..=. . .-.+|.++.+.+++++.+|.+|+.++....... +
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-T 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-c
Confidence 6889999999999988999999999999986654332211 1 247999999999999999999999987654332 2
Q ss_pred hHHHhh-cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhh--hCcHHHHHHHhccCChhHHHHHHHHHHHhc
Q 008835 342 KGTIVN-AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLLCDGTPRGKKDAATAIFNLS 418 (551)
Q Consensus 342 ~~~i~~-~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 418 (551)
+..+.. ..+++.+..+-.+.++++|++.+.+|..|..... .++.. .+++..++..-++.++.+...|+.....++
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP--DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 233332 4567777777777899999999999998865543 23333 378888888888888999999999999999
Q ss_pred cCCChHHHHHH--cCChHHHHHhhccCCh---------------------------------------------------
Q 008835 419 IYQGNKARAVR--AGIVPPLMRFLKDAGG--------------------------------------------------- 445 (551)
Q Consensus 419 ~~~~~~~~l~~--~g~i~~Lv~lL~~~~~--------------------------------------------------- 445 (551)
..+--+..+.. ...||.|+.-+.-.+.
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 88744433332 3556666653221110
Q ss_pred -----hhHH---HHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHh----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 008835 446 -----GMVD---EALAILAILASHQEGKTAIGQAEPIPVLMEVIR----TGSPRNRENAAAVLWAICTGDAEQLKIAREL 513 (551)
Q Consensus 446 -----~~~~---~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~----~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~ 513 (551)
.++. .|+.+|+|+-. ...++.++.+|+ +..-.+||.++-+|..++.+.-.. ++..
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~----------~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~ 431 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFG----------DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVPH 431 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhH----------HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---cccc
Confidence 1121 23333333322 234555555554 455678999999999998654221 2211
Q ss_pred --CcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 514 --DAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 514 --g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
-.++.|+.++.+..+-+|....|.|.....+
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 2688888999999999999999988877654
No 76
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.7e-07 Score=95.21 Aligned_cols=69 Identities=28% Similarity=0.671 Sum_probs=59.0
Q ss_pred CCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhc
Q 008835 169 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENN 240 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~ 240 (551)
...+++.||||++.+.+|++++|||+||+.|+..++. +...||.|+. ... .+.+|..+.+++......+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 4568899999999999999999999999999999998 6788999996 323 6779999999888776543
No 77
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0001 Score=82.17 Aligned_cols=150 Identities=17% Similarity=0.100 Sum_probs=106.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhC
Q 008835 393 PALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQA 471 (551)
Q Consensus 393 ~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~ 471 (551)
+.+-.+|.+.+..-++.|+.+|.-++.+......-.=..+++.+++.|.++++.++-.|+.++..++.+ ...-+.-...
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 334445667788888889988888876543222211245788888889999999999999999999985 2333333334
Q ss_pred CCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHH-HHHHHHcCcHH-HHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 472 EPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQ-LKIARELDAEE-ALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 472 ~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~~~-~~~~~~~g~i~-~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
-.++.|+..+.+ ++++++.+|+.+|.|+....+.. ..... .+++. .|..+.+++++.+++.+..+|.-...
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 577788888876 56899999999999987655322 22222 24555 66667788999999999999877654
No 78
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.2e-07 Score=86.59 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=46.2
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHH-HHHhCCCCCCCCcccccCCC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQK-WLDAGHKTCPKTQQTLLHTA 222 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~-~~~~~~~~CP~c~~~l~~~~ 222 (551)
..+|.|+||++.+.+|..++|||.||..||.. |-......||.||+......
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 46899999999999999999999999999999 98876677999998775543
No 79
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.34 E-value=3.4e-07 Score=63.03 Aligned_cols=41 Identities=24% Similarity=0.604 Sum_probs=35.1
Q ss_pred ccccccccC---cCCeeccCcccccHHHHHHHHHhCCCCCCCCcc
Q 008835 175 RCPISLELM---KDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQ 216 (551)
Q Consensus 175 ~Cpic~~~~---~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~ 216 (551)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999988 357789999999999999998 45678999974
No 80
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=5.9e-07 Score=87.18 Aligned_cols=52 Identities=25% Similarity=0.528 Sum_probs=41.8
Q ss_pred CCcccccccc-cCcCCe----eccCcccccHHHHHHHHHhCCCCCCCCcccccCCCC
Q 008835 172 DDFRCPISLE-LMKDPV----IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 223 (551)
Q Consensus 172 ~~~~Cpic~~-~~~~Pv----~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~ 223 (551)
++..||+|.. ....|- +.+|||.||..|+...|..|...||.|+.++....+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 4578999997 234553 237999999999999988888899999999887663
No 81
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.2e-07 Score=92.43 Aligned_cols=69 Identities=30% Similarity=0.590 Sum_probs=55.1
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHh----CCCCCCCCcccccCCCCccchh----hHHHHHHHHHhcC
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLHTALTPNYV----LKSLIALWCENNG 241 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~----~~~~CP~c~~~l~~~~~~~n~~----l~~~i~~~~~~~~ 241 (551)
+..||||++...-|+.+.|||.||..||-++|.. +...||+|+..+...++.|-+. -+..+...+..||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 7899999999999999999999999999999985 3568999999988766554432 2333566666666
No 82
>PTZ00429 beta-adaptin; Provisional
Probab=98.24 E-value=0.00055 Score=76.06 Aligned_cols=208 Identities=17% Similarity=0.178 Sum_probs=145.5
Q ss_pred ccchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH
Q 008835 224 TPNYVLKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVC 303 (551)
Q Consensus 224 ~~n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~ 303 (551)
+.|..+++++-.+........|.- .-..+..|...+.++++.++.-|++.|..+-. +..-.
T Consensus 79 S~d~elKKLvYLYL~~ya~~~pel----------------alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e- 139 (746)
T PTZ00429 79 STDLELKKLVYLYVLSTARLQPEK----------------ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLE- 139 (746)
T ss_pred CCCHHHHHHHHHHHHHHcccChHH----------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHH-
Confidence 346788888877776654322221 12568888999999999999988888877642 22111
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh
Q 008835 304 IAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 383 (551)
Q Consensus 304 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~ 383 (551)
-.++.+.+.|.+.++-+|..|+.++.++-.... +.+...|.++.|.++|.+.++.+..+|+.+|..+.......
T Consensus 140 ----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 140 ----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 235677888899999999999999999865322 33446788899999999999999999999999997554322
Q ss_pred HHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 384 VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 384 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
. -...+.+..|+..|.+.++-.+...+.+|..... .+.... ..++..+.+.|.+.++.++-.|+.++.++...
T Consensus 214 l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 214 I-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred h-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 1 2234666777777777677777777777755322 221111 24567777778777888888888888877754
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.23 E-value=0.00012 Score=75.82 Aligned_cols=187 Identities=18% Similarity=0.086 Sum_probs=99.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh
Q 008835 310 IPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA 389 (551)
Q Consensus 310 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~ 389 (551)
+..|+..|.+.++.++..++.+|+.+- ..+..+.|+.+|++.++.++..++.++.... .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~ 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------H 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------c
Confidence 556666666666666666666665332 2344555666665555555555554444311 1
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhh
Q 008835 390 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG 469 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~ 469 (551)
...+.+..+|++.++.++..|+.+|..+-. ...++.|...+.+.++.++..|+..+..+.. +.....+.
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~ 215 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCR 215 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Confidence 234455555655566666666666555432 2334445555555555555555555544422 11111100
Q ss_pred ----------------------hCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCC
Q 008835 470 ----------------------QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGT 527 (551)
Q Consensus 470 ----------------------~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 527 (551)
....+..|..+++.. .++..++.+|..+.. ...++.|+..+....
T Consensus 216 ~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~ 282 (410)
T TIGR02270 216 RFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA--ATRREALRAVGLVGD-----------VEAAPWCLEAMREPP 282 (410)
T ss_pred HHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh--hhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH
Confidence 013445555555432 256666666655443 236777777766443
Q ss_pred hHHHHHHHHHHHHHHh
Q 008835 528 DRAKRKAGSILELLQR 543 (551)
Q Consensus 528 ~~~k~~A~~lL~~l~~ 543 (551)
.++.|.+.++.++.
T Consensus 283 --~aR~A~eA~~~ItG 296 (410)
T TIGR02270 283 --WARLAGEAFSLITG 296 (410)
T ss_pred --HHHHHHHHHHHhhC
Confidence 88899998888864
No 84
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.23 E-value=9.5e-05 Score=77.68 Aligned_cols=226 Identities=15% Similarity=0.085 Sum_probs=152.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCcHHHH
Q 008835 277 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIV 355 (551)
Q Consensus 277 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv 355 (551)
..|......|+.++..++..-..-|.-+....++.+|+++|..++..++..++.+|.|+..+ ...|..+...|+|+.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34667778888888888875444555566778999999999999999999999999999875 77799999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh--hhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh-HHHHHHc--
Q 008835 356 DVLKNGSMEARENAAATLFSLSVIDENKVAIG--AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN-KARAVRA-- 430 (551)
Q Consensus 356 ~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~l~~~-- 430 (551)
+++.+.++.++..+.|+|.++....+...+.. +.=.-..++.+..+++..+++.+...|.||..+... ...+++.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 99999999999999999999998876544333 233335567777888999999999999999876433 3333332
Q ss_pred CChHHHHHhhc-cCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHH---H-----hcCCHHHHHHHHHHHHHHhc
Q 008835 431 GIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEV---I-----RTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 431 g~i~~Lv~lL~-~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~l---L-----~~~~~~~k~~A~~~L~~L~~ 501 (551)
..+......+. .+...+...-...+.++...-++...-.-.|.++.++-. + .+......-++++.+.++..
T Consensus 548 ~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~ 627 (678)
T KOG1293|consen 548 DVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTT 627 (678)
T ss_pred HHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccC
Confidence 12222222221 122233333333444444332222221112333333222 1 12335567788888888876
Q ss_pred C
Q 008835 502 G 502 (551)
Q Consensus 502 ~ 502 (551)
.
T Consensus 628 ~ 628 (678)
T KOG1293|consen 628 T 628 (678)
T ss_pred C
Confidence 3
No 85
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.23 E-value=0.00066 Score=69.61 Aligned_cols=273 Identities=18% Similarity=0.184 Sum_probs=190.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHhcccCCCchHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
..+.+...+-+.+.+++..+.+.++++.. +...-..+.+.+.=-.++.-|..+ +..-++.|+..+..+.....+...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 34444444555568899999999999986 666777777777666666667654 455778898888777554333222
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChH
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 424 (551)
+..|.+..++.+..+.+...+..|..+|..++..+ ...+...|++..|++.+-++..+.....+.++..+...+..|
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 25678899999999998899999999999998754 456667899999999998887778888899999999998888
Q ss_pred HHHHHcCChHHHHHhhccC-------Ch--hhHHHHHHHHHHHhcChhhHHHhhhC--CCHHHHHHHHhcCCHHHHHHHH
Q 008835 425 ARAVRAGIVPPLMRFLKDA-------GG--GMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAA 493 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~-------~~--~~~~~al~~L~nL~~~~~~~~~i~~~--~~v~~L~~lL~~~~~~~k~~A~ 493 (551)
..+...--+..+..-+.+. +. +....+..++..+-.+=.|--.+... .++..|+..|+.+++++|+...
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 7666543355555544432 11 23334444444443333333333322 5788888888888888888877
Q ss_pred HHHHHHhc-------------------CC-----------------------------HHH----HHHHHHcCcHHHHHH
Q 008835 494 AVLWAICT-------------------GD-----------------------------AEQ----LKIARELDAEEALKE 521 (551)
Q Consensus 494 ~~L~~L~~-------------------~~-----------------------------~~~----~~~~~~~g~i~~L~~ 521 (551)
.++..+-. +. ..+ ...+++.|.++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 77766552 00 001 133468999999999
Q ss_pred HhhhC-ChHHHHHHHHHHHHHHh
Q 008835 522 LSESG-TDRAKRKAGSILELLQR 543 (551)
Q Consensus 522 ll~~~-~~~~k~~A~~lL~~l~~ 543 (551)
++.+. ++...+||.-+|..+-+
T Consensus 342 li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHHH
Confidence 99988 88999999998886643
No 86
>PF05536 Neurochondrin: Neurochondrin
Probab=98.22 E-value=4e-05 Score=82.50 Aligned_cols=189 Identities=20% Similarity=0.161 Sum_probs=138.1
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc----hhHHhhhhCcHHHHHHHhccC-------ChhHHHHHHHHHHHhc
Q 008835 350 AIPDIVDVLKNGSMEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDG-------TPRGKKDAATAIFNLS 418 (551)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~----~~~~i~~~~~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~ 418 (551)
.++..+.+|+..+.+-+-.++..+.++...++ .+..+.+.-+.+.|-++|+++ ....+..|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46778889998886666677777788876554 234566665578888899873 2455778899999999
Q ss_pred cCCChH--HHHHHcCChHHHHHhhccCCh-hhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHH
Q 008835 419 IYQGNK--ARAVRAGIVPPLMRFLKDAGG-GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAV 495 (551)
Q Consensus 419 ~~~~~~--~~l~~~g~i~~Lv~lL~~~~~-~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~ 495 (551)
..++.. ..++ +-||.|++.+...+. .++..|+.+|..++.+++|+..+.+.|+++.|.+.+.+ .+...+.|..+
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 976644 3444 569999999988766 99999999999999999999999999999999999987 56779999999
Q ss_pred HHHHhcCCHHHHHHHHH---cCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 496 LWAICTGDAEQLKIARE---LDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 496 L~~L~~~~~~~~~~~~~---~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
|.+++.......-.-.. ..+++.|...+.......|-.+..+|..+
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 99998755321111001 13445555555555555555555555544
No 87
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.18 E-value=0.0009 Score=67.19 Aligned_cols=234 Identities=14% Similarity=0.103 Sum_probs=173.4
Q ss_pred CCHHHHHHhhcCC-CHHHHHHHHHHHHhcccCCCchHHHhh-------cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008835 308 GAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIVN-------AGAIPDIVDVLKNGSMEARENAAATLFSLSVI 379 (551)
Q Consensus 308 g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~-------~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 379 (551)
..+.+++.+++.. .++....++..+..+-..+..+..+.. ...-...+.+|..++.-+...+.+++..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 3677888888874 455566666666666555555554442 23477899999999988888899999988766
Q ss_pred cchhHHhhhhC-cHHHHHHHhcc-CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHH
Q 008835 380 DENKVAIGAAG-AIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAIL 455 (551)
Q Consensus 380 ~~~~~~i~~~~-~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~L 455 (551)
...+...++.. ....|-..+++ .+.+...-|+++|..+...++.|..++.++++..++..+.+ .+-.++...+.++
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 54443333322 22334445555 56778888999999999999999999999999999999843 5667888999999
Q ss_pred HHHhcChhhHHHhhhCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCH------HHHHHHHHcCcHHHHHHHhhhC--
Q 008835 456 AILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAICTGDA------EQLKIARELDAEEALKELSESG-- 526 (551)
Q Consensus 456 ~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~-~~~k~~A~~~L~~L~~~~~------~~~~~~~~~g~i~~L~~ll~~~-- 526 (551)
+.|+.++...+.+...+.++.|.++++... ..+..-.++++.|++..++ ..+..++..++.+.+-.|.+.+
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkys 304 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYS 304 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCC
Confidence 999999988888877799999999998654 6677888999999998874 5556778888888887777665
Q ss_pred ChHHHHHHHHHHHHH
Q 008835 527 TDRAKRKAGSILELL 541 (551)
Q Consensus 527 ~~~~k~~A~~lL~~l 541 (551)
++++..-...+-..|
T Consensus 305 DEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 305 DEDLVDDIEFLTEKL 319 (442)
T ss_pred cHHHHHHHHHHHHHH
Confidence 555555444444444
No 88
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.00015 Score=78.21 Aligned_cols=235 Identities=20% Similarity=0.218 Sum_probs=166.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh---HHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHh
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN---RVCIAEAGAIPLLVELLSS-------TDPRTQEHAVTALLN 334 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~---r~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~n 334 (551)
...+...+.+|++.+.+.+..++.-+..+.+.++.. +..+.++=+.+.|-++|++ +....+..|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 357889999999988788889999999998866633 4457777678999999988 235678889999999
Q ss_pred cccCCCchHHHhhcCCcHHHHHHHhcCCH-HHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHH
Q 008835 335 LSINDSNKGTIVNAGAIPDIVDVLKNGSM-EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA 413 (551)
Q Consensus 335 Ls~~~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~a 413 (551)
++.+++....---.+-||.|++++.+.+. ++...|..+|..++..++++..+.+.|+++.|++.+.+ .+.....|+.+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 99876554322224569999999988876 99999999999999999999999999999999999988 55678889999
Q ss_pred HHHhccCCChHHHHHH----cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh--HHHhhhC----CCHHHHHHHHhc
Q 008835 414 IFNLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG--KTAIGQA----EPIPVLMEVIRT 483 (551)
Q Consensus 414 L~nL~~~~~~~~~l~~----~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~--~~~i~~~----~~v~~L~~lL~~ 483 (551)
|.+++...+....--. ..+++.+...+........-.++..|..+-...+. ....... .....+..+|++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9998775442211111 13455566666555555566777777776654421 1111122 334555556665
Q ss_pred C-CHHHHHHHHHHHHHHh
Q 008835 484 G-SPRNRENAAAVLWAIC 500 (551)
Q Consensus 484 ~-~~~~k~~A~~~L~~L~ 500 (551)
. .+..|..|..+...|.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 4 3555655554444443
No 89
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.15 E-value=2e-06 Score=66.27 Aligned_cols=39 Identities=33% Similarity=0.826 Sum_probs=31.6
Q ss_pred cccccccCcCC------------e-eccCcccccHHHHHHHHHhCCCCCCCCc
Q 008835 176 CPISLELMKDP------------V-IVSTGQTYERSCIQKWLDAGHKTCPKTQ 215 (551)
Q Consensus 176 Cpic~~~~~~P------------v-~~~cgh~~~~~ci~~~~~~~~~~CP~c~ 215 (551)
|+||++.+.+| + ..+|||.|...||.+|+.. +.+||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999988443 2 2489999999999999986 55999997
No 90
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=9.7e-05 Score=70.99 Aligned_cols=193 Identities=21% Similarity=0.187 Sum_probs=138.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh
Q 008835 311 PLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA 389 (551)
Q Consensus 311 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~ 389 (551)
--++.+|.+.+|.++..|+..+.++... ..+.... ....++.+.++++...+ ...|+.+|.|+|.....+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3578899999999999999999998765 3332222 24467888888887665 677899999999999888888777
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHH--c----CChHHHHHhhcc-CCh--hhHHHHHHHHHHHhc
Q 008835 390 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR--A----GIVPPLMRFLKD-AGG--GMVDEALAILAILAS 460 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~--~----g~i~~Lv~lL~~-~~~--~~~~~al~~L~nL~~ 460 (551)
.+..++.++-+........++..|.||+..++....+.. . .++..++..+.+ +.. .-..+..-++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888899988887667788899999999998877665432 1 344444444433 221 224567788999999
Q ss_pred ChhhHHHhhhCCC--HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH
Q 008835 461 HQEGKTAIGQAEP--IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL 507 (551)
Q Consensus 461 ~~~~~~~i~~~~~--v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~ 507 (551)
.+.||..+..... +..++.+-..++.--|...+++|.|.|....-+-
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~ 210 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHE 210 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHH
Confidence 9999999987653 2333333332333345677899999998764333
No 91
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.08 E-value=5.3e-06 Score=56.19 Aligned_cols=40 Identities=53% Similarity=0.706 Sum_probs=37.9
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 008835 297 NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS 336 (551)
Q Consensus 297 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 336 (551)
+++++..+++.|+||.|+++|.++++++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999996
No 92
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00092 Score=67.29 Aligned_cols=238 Identities=17% Similarity=0.135 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC------CCc----hHHHhhcCCcHH
Q 008835 284 RAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN------DSN----KGTIVNAGAIPD 353 (551)
Q Consensus 284 ~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~------~~~----~~~i~~~g~i~~ 353 (551)
...+..+..++. -|+-...+++.++|+.|+.+|.+.|.++....+..|-.|... .+. -..+++.++++.
T Consensus 102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 445666777774 777788899999999999999999999999999988888642 122 234557888999
Q ss_pred HHHHHhcCCHH------HHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccC-C-hhHHHHHHHHHHHhccCCC-h
Q 008835 354 IVDVLKNGSME------ARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDG-T-PRGKKDAATAIFNLSIYQG-N 423 (551)
Q Consensus 354 Lv~~L~~~~~~------~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~-~-~~~~~~a~~aL~nL~~~~~-~ 423 (551)
|++-+..=+.. ...++...+.|+.... .....+.+.|.+..|+..+... . ..-+..|..+|.-+..+.+ +
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 98887654333 3456667778887665 4667777778888888866543 2 3456677777777766554 6
Q ss_pred HHHHHHcCChHHHHHhhcc---C------ChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHH
Q 008835 424 KARAVRAGIVPPLMRFLKD---A------GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAA 494 (551)
Q Consensus 424 ~~~l~~~g~i~~Lv~lL~~---~------~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~ 494 (551)
+...-...+|..++.-+.- . ..++.+....+|+.+-..+.++..+....++....-+++. ....+..|.+
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 6667778888888876632 2 3456677888888888899999999998888888777776 4456778999
Q ss_pred HHHHHhcCCH--HHHHHHHHcCcHHHHHHHh
Q 008835 495 VLWAICTGDA--EQLKIARELDAEEALKELS 523 (551)
Q Consensus 495 ~L~~L~~~~~--~~~~~~~~~g~i~~L~~ll 523 (551)
+|-....+.+ .+|..+++.++...++-+.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 9999888775 7888888887777776543
No 93
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.00 E-value=6.9e-06 Score=77.30 Aligned_cols=67 Identities=24% Similarity=0.468 Sum_probs=56.9
Q ss_pred cccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCcc-cccCCCCccchhhHHHHHHHHHhc
Q 008835 174 FRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQ-TLLHTALTPNYVLKSLIALWCENN 240 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~-~l~~~~~~~n~~l~~~i~~~~~~~ 240 (551)
+.||+|..+++.|+-+ +|||+||..||+..+-...+.||.|.. .+-...++|+...+..|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 8999999999999976 899999999999888877899999954 344566889988888888877643
No 94
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00016 Score=74.66 Aligned_cols=233 Identities=18% Similarity=0.196 Sum_probs=160.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
...+-|..+|..++++++..+=..|..+-.+-...-..+--...++.++.-+.++++.+|..|+.-+.....-....-..
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 46778888998888888765555444443321111111122357899999999999999999988777665444433344
Q ss_pred hhcCCcHHHHHHHhcCCH-HHHHHHHH---HHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 346 VNAGAIPDIVDVLKNGSM-EARENAAA---TLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~-~~~~~aa~---~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
.-.|++..++..+.+..+ .+++.+.. .|..+......+..+.-...+..|...+.+...+++..++..+..|-...
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC
Confidence 456777777777766543 24433332 23333333333333433457788888888889999999999999998888
Q ss_pred ChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 422 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 422 ~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
+++...-...+.+.|+.-|.+.++.++..++.+++++|.++..... ..++..|+++......-.+..+.-++..||.
T Consensus 368 p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 368 PGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred cchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 8877767788999999999999999999999999999998766521 1244555555555556677778888888886
No 95
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.94 E-value=0.0011 Score=67.85 Aligned_cols=252 Identities=14% Similarity=0.092 Sum_probs=175.3
Q ss_pred HHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcC--CHHH
Q 008835 288 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG--SMEA 365 (551)
Q Consensus 288 ~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~ 365 (551)
..|..+.+..+.-+..+.-....+.+..++-+++.+++..+.+++..+..++..-..+.+.+.---++.-|..+ ...-
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~E 84 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVE 84 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence 34555555666666655555566666666666669999999999999988888877887777666677777655 3556
Q ss_pred HHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCCh
Q 008835 366 RENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG 445 (551)
Q Consensus 366 ~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 445 (551)
|+.|...+..+.....+...+ ..+++..++.+..+.++..+..|+.+|+.|+..++ ..++..|++..|++.+.++..
T Consensus 85 R~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccH
Confidence 788888887776554332222 45889999999999999999999999999998643 346689999999999988666
Q ss_pred hhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC-------CH--HHHHHHHHHHHHH-hcCCHHHHHHHHHc-C
Q 008835 446 GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-------SP--RNRENAAAVLWAI-CTGDAEQLKIAREL-D 514 (551)
Q Consensus 446 ~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~-------~~--~~k~~A~~~L~~L-~~~~~~~~~~~~~~-g 514 (551)
.+.+..+.++..+-.+|..|..+...--+..++.-+.+. +. +.-..+..++..+ -+.+ .....-.+. .
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-GLl~l~~~~~~ 240 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-GLLYLSMNDFR 240 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-ceeeeecCCch
Confidence 688899999999999999999877643344443333211 12 1122333333333 3322 222111222 4
Q ss_pred cHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 515 AEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 515 ~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
++..|+..+...++++++....++.-+-+
T Consensus 241 ~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 241 GLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 78889999999999988888887766643
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.93 E-value=0.0013 Score=67.13 Aligned_cols=187 Identities=30% Similarity=0.360 Sum_probs=140.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..+..++..+.+.++.++..|...+..+.. .-++|.|..++.+.++.++..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 578889999988888899888888555432 256899999999999999999999888663
Q ss_pred hhcCCcHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhH------------HHHHHH
Q 008835 346 VNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRG------------KKDAAT 412 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~------------~~~a~~ 412 (551)
....++.++..|. +.+..++..++++|..+-.. ..+.+++..+.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 3457899999999 58899999999999987442 35788888888765322 223333
Q ss_pred HHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHH
Q 008835 413 AIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 492 (551)
Q Consensus 413 aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A 492 (551)
+|..+ -+...++.+..++.+....++..|...|..+.... ..+.+.+...+...+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 33222 22346888999998888889999999998888764 2455777777777777888777
Q ss_pred HHHHHHHhc
Q 008835 493 AAVLWAICT 501 (551)
Q Consensus 493 ~~~L~~L~~ 501 (551)
+..|..+-.
T Consensus 234 ~~~l~~~~~ 242 (335)
T COG1413 234 LLALGEIGD 242 (335)
T ss_pred HHHhcccCc
Confidence 777666554
No 97
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.93 E-value=5.4e-06 Score=80.02 Aligned_cols=66 Identities=20% Similarity=0.412 Sum_probs=54.0
Q ss_pred CCCCCcccccccccCcCCee-ccCcccccHHHHHHHHHhCCCCCCCCcccccCC----CCccchhhHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT----ALTPNYVLKSLIAL 235 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~----~~~~n~~l~~~i~~ 235 (551)
.+.....|++|..+|.|+.+ +-|=||||+.||-+++.. ..+||.|+..+-.. .+.++..|+.++.+
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 45677899999999999986 579999999999999997 88899998776543 35666777776643
No 98
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.93 E-value=0.00039 Score=67.13 Aligned_cols=228 Identities=16% Similarity=0.129 Sum_probs=164.0
Q ss_pred HhhcCCCHHHHHHHHHHHHhcccCCCchHHHh-hcCCcHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchhHHhhhh-C
Q 008835 315 ELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKVAIGAA-G 390 (551)
Q Consensus 315 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-~ 390 (551)
++++.-++-++.-|+.+|.++....+.|..+- +...-..+++.+++. ..+++.+.+-+++-|+........|-.. .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455566788999999999999888877665 455667899999875 5789999999999999887766545443 6
Q ss_pred cHHHHHHHhccC-ChhHHHHHHHHHHHhccCC--ChHHHHHHcCChHHHHHhhcc---CChhhHHHHHHH---H------
Q 008835 391 AIPALIRLLCDG-TPRGKKDAATAIFNLSIYQ--GNKARAVRAGIVPPLMRFLKD---AGGGMVDEALAI---L------ 455 (551)
Q Consensus 391 ~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~--~~~~~l~~~g~i~~Lv~lL~~---~~~~~~~~al~~---L------ 455 (551)
.|.-|+.+.+.. ..++.+.++.++.|++... +.-..+.-.|-+.+-++.|.. .+++++...-.+ |
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 777788887764 3567788999999998833 223345555656666666644 344443221111 1
Q ss_pred --------HH-----HhcChh---------hHHHhhhC--CCHHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCHHHHHHH
Q 008835 456 --------AI-----LASHQE---------GKTAIGQA--EPIPVLMEVIRTGSPR-NRENAAAVLWAICTGDAEQLKIA 510 (551)
Q Consensus 456 --------~n-----L~~~~~---------~~~~i~~~--~~v~~L~~lL~~~~~~-~k~~A~~~L~~L~~~~~~~~~~~ 510 (551)
.. |+-+|. +...+.+. ..+..|.++++...+. .-.-|+.=+.++....|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 11 111222 23344443 4689999999987765 45567888899999999999999
Q ss_pred HHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 511 RELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 511 ~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
...|+-+.+++++.+.++++|-.|..+++.+-
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 99
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00022 Score=74.93 Aligned_cols=267 Identities=15% Similarity=0.110 Sum_probs=173.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
...++.++++.+++++..+..|+.++....-..+ ...+.. -.++..|..+-.+.++++|.+.+.+|..|......|-
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 3689999999999999999999999887654322 222222 2467788888888999999999999988865332222
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh--CcHHHHHHHhccCC------------------
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGT------------------ 403 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--~~i~~Lv~lL~~~~------------------ 403 (551)
.---.++++-++..-++.+.++.-.|+.....++..+-.+..+... ..||.|+.-+.-.+
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 1112456677777777778899999999999999888666666554 67777764332110
Q ss_pred --------------------------------------hhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhc----
Q 008835 404 --------------------------------------PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK---- 441 (551)
Q Consensus 404 --------------------------------------~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~---- 441 (551)
-..++..+.+|--| ..+....+++.++++|+
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHHHHHHcC
Confidence 01122222222111 11233455666666654
Q ss_pred cCChhhHHHHHHHHHHHhcChhhHHHhhhC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHH
Q 008835 442 DAGGGMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEA 518 (551)
Q Consensus 442 ~~~~~~~~~al~~L~nL~~~~~~~~~i~~~--~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~ 518 (551)
+.+-.+++.++-+|+.++... -+-+... ..+|.++.+|.+..+-+|.-++|+|...+..-.. ....... .++..
T Consensus 404 ~~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ 480 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEG 480 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHH
Confidence 356667788888888777532 1222222 3688889999999999999999999776542100 0111111 13455
Q ss_pred HHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 519 LKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 519 L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
|+..+-+++.++++.|..+...+.+
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5666678899999999998887754
No 100
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0014 Score=63.66 Aligned_cols=242 Identities=13% Similarity=0.120 Sum_probs=165.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhChhhH----HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhh
Q 008835 272 LGKLANGNVEEQRAAAGELRLLAKRNADNR----VCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 347 (551)
Q Consensus 272 v~~L~s~~~~~~~~a~~~L~~L~~~~~~~r----~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 347 (551)
-..|..++..++.-++..+.-+..+++.|. ..++++|..|.++..+...|.++...|...+..++..+..-+.+..
T Consensus 88 QrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFe 167 (524)
T KOG4413|consen 88 QRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFE 167 (524)
T ss_pred HhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcc
Confidence 334444555566667777766665555332 2355789999999999999999999999999999988888888887
Q ss_pred cCCcHHHHH--HHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhcc-CChhHHHHHHHHHHHhccCCCh
Q 008835 348 AGAIPDIVD--VLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGN 423 (551)
Q Consensus 348 ~g~i~~Lv~--~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~ 423 (551)
...++.+-. +-...+.-++......+..+++.. ........+|.+..|..-|+. .+.-++..++.....|.....+
T Consensus 168 SellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg 247 (524)
T KOG4413|consen 168 SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG 247 (524)
T ss_pred cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh
Confidence 766665432 222333445555666666655443 344445556888777776665 5666788888999999999989
Q ss_pred HHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhcC----hhhHHHhhhC--CCHHHHHHHHhcCCHHHHHHHHHH
Q 008835 424 KARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILASH----QEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAV 495 (551)
Q Consensus 424 ~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~nL~~~----~~~~~~i~~~--~~v~~L~~lL~~~~~~~k~~A~~~ 495 (551)
+..+.+.|+|+.+.+++.. .++--.-.++.....+-.. .-.-+++.+. -+|...++++...++..++.|+.+
T Consensus 248 reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDa 327 (524)
T KOG4413|consen 248 REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDA 327 (524)
T ss_pred hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHH
Confidence 9999999999999999965 3333333455444443332 2122333332 356777888888899999999999
Q ss_pred HHHHhcCCHHHHHHHHHcC
Q 008835 496 LWAICTGDAEQLKIARELD 514 (551)
Q Consensus 496 L~~L~~~~~~~~~~~~~~g 514 (551)
+..+.++. +..+.+...|
T Consensus 328 lGilGSnt-eGadlllkTg 345 (524)
T KOG4413|consen 328 LGILGSNT-EGADLLLKTG 345 (524)
T ss_pred HHhccCCc-chhHHHhccC
Confidence 99998766 4555555555
No 101
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=8.8e-06 Score=82.68 Aligned_cols=73 Identities=25% Similarity=0.505 Sum_probs=59.1
Q ss_pred CCCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCC-----CccchhhHHHHHHHHHh
Q 008835 166 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA-----LTPNYVLKSLIALWCEN 239 (551)
Q Consensus 166 ~~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~-----~~~n~~l~~~i~~~~~~ 239 (551)
.+..+..+|.|-+|...+.+||+++|||+||..||.+-.+ ....||.|+.++.... ..+|+....+|..+++.
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455689999999999999999999999999999999776 4677999999887432 23466677788877654
No 102
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.004 Score=65.66 Aligned_cols=266 Identities=17% Similarity=0.158 Sum_probs=175.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHH-HHHHHHhcccCCCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEH-AVTALLNLSINDSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~-a~~~L~nLs~~~~~~~~ 344 (551)
...+.+.+.+.+.+...+..+.+.+..+.++. .-..+.+.+++..|.+.+.+......+. +.-+.-....+-. .
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~ 208 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---P 208 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---C
Confidence 46677778888888889999999999998643 4556677789999999998865554443 2222111111100 2
Q ss_pred HhhcCCcHHHHHHHhc---CCHHHHHHHHHHHHHhc-CCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 345 IVNAGAIPDIVDVLKN---GSMEARENAAATLFSLS-VIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~---~~~~~~~~aa~~L~~Ls-~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
..+.+.++.+-.+|.+ ...++|..|..+...+- ..+.+.. .-.+|.++.-+.....+.+..++..|..++..
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2245566666666643 34666666555443321 1121111 13456666555555778899999999999998
Q ss_pred CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH-----------------------------HHh---
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK-----------------------------TAI--- 468 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~-----------------------------~~i--- 468 (551)
.+..-...-..+||.+.+.|.+.+++++..+..++..+++..++- ..+
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~ 364 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAE 364 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeee
Confidence 888888888999999999999999999999999998887632211 011
Q ss_pred hhCCCHHHHHHHHhc----CCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 469 GQAEPIPVLMEVIRT----GSPRNRENAAAVLWAICTGD--AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 469 ~~~~~v~~L~~lL~~----~~~~~k~~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
++.-.+..++.+|+. .+...+..++.+..|+|.-- +......... +++.|-..+....|++|.-|..+|.-+
T Consensus 365 V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 365 VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 112335555666654 34567788999999999743 4444433333 577777777777899999999998444
No 103
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.80 E-value=0.00017 Score=69.29 Aligned_cols=184 Identities=21% Similarity=0.168 Sum_probs=119.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhC--hhhHHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcC
Q 008835 274 KLANGNVEEQRAAAGELRLLAKRN--ADNRVCIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAG 349 (551)
Q Consensus 274 ~L~s~~~~~~~~a~~~L~~L~~~~--~~~r~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g 349 (551)
.-.+.+|+.+.+|+..|+.+...+ ......+.+. ..++.+...+.+....+...|+.++..++..-...-.-.-..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 346788999999999999999877 2333333321 566778888887788899999999999986533322222345
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC-hHHHHH
Q 008835 350 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAV 428 (551)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~l~ 428 (551)
.++.|++.+.++..-++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+...-+ ....+-
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 7888999998888889999999999887654311111 25667777888899999999999988866444 111111
Q ss_pred ----HcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 429 ----RAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 429 ----~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
-..+++.+...+.+.++++++.|-.++..+...
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 145788888999999999999999999999775
No 104
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.80 E-value=1.4e-05 Score=82.42 Aligned_cols=67 Identities=24% Similarity=0.568 Sum_probs=55.3
Q ss_pred CCCCCcccccccccCcCCee-ccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCcc-chhhHHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP-NYVLKSLIALW 236 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~-n~~l~~~i~~~ 236 (551)
.+.+++.||+|..++.||+. +.|||.||+.|+..|... +..||.|+..+......+ ....+..+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 47888999999999999999 599999999999999997 888999988877665554 34555555554
No 105
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00028 Score=72.40 Aligned_cols=259 Identities=14% Similarity=0.117 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhccc-CCCchHHHhhcCCcHHHHHHHhcCC
Q 008835 284 RAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLKNGS 362 (551)
Q Consensus 284 ~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~~~ 362 (551)
..++..|..+++.-..-|.-+.+..++++|+++|+.++..+.--+...++|+.. .+..+..+...|+++.|+.++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 345566777777666678888899999999999999888888888888898866 4666888999999999999999888
Q ss_pred HHHHHHHHHHHHHhcCCcch--hHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC-h---HHHHHHc---C-C
Q 008835 363 MEARENAAATLFSLSVIDEN--KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-N---KARAVRA---G-I 432 (551)
Q Consensus 363 ~~~~~~aa~~L~~Ls~~~~~--~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~---~~~l~~~---g-~ 432 (551)
..++.+..|+|..+-.+... +-...+.-++..++++.+++...++..++..|.|++.+.. | +..+++. . .
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 89999999999999877643 3455566678899999999999999999999999987332 1 1111111 1 3
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH-Hhhh-CCCHHHHHHHHhc---------C-----------------
Q 008835 433 VPPLMRFLKDAGGGMVDEALAILAILASHQEGKT-AIGQ-AEPIPVLMEVIRT---------G----------------- 484 (551)
Q Consensus 433 i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~-~i~~-~~~v~~L~~lL~~---------~----------------- 484 (551)
...|++.+...++-.....+.+|.+++...+... .+.+ ...+..+.++|.. |
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 4456666666666556666777777766544432 2222 2333333333310 0
Q ss_pred ---------------------------CHHHHHHHHHHHHHHhc---------CCHHHHHHHHHcCcHHHHHHHhhhCCh
Q 008835 485 ---------------------------SPRNRENAAAVLWAICT---------GDAEQLKIARELDAEEALKELSESGTD 528 (551)
Q Consensus 485 ---------------------------~~~~k~~A~~~L~~L~~---------~~~~~~~~~~~~g~i~~L~~ll~~~~~ 528 (551)
++++-....|++.|+.- ...+.++.+...|+-+.|..+..+.++
T Consensus 647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl 726 (743)
T COG5369 647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL 726 (743)
T ss_pred cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence 01122223333333221 112556777888988888888888899
Q ss_pred HHHHHHHHHHHHHH
Q 008835 529 RAKRKAGSILELLQ 542 (551)
Q Consensus 529 ~~k~~A~~lL~~l~ 542 (551)
.+++++..+|.+++
T Consensus 727 ~vrek~~taL~~l~ 740 (743)
T COG5369 727 IVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999886
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.77 E-value=0.00025 Score=68.07 Aligned_cols=183 Identities=19% Similarity=0.153 Sum_probs=117.3
Q ss_pred hcCCHHHHHHHHHHHHHhcCCc---chhHHhhhh--CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCCh
Q 008835 359 KNGSMEARENAAATLFSLSVID---ENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIV 433 (551)
Q Consensus 359 ~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i~~~--~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i 433 (551)
.+.+++.+..|+..|..+.... .....+... .++..+...+.+....+...|+.++..|+..-.....-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567999999998888876544 233333322 56667777777777788899999999998755444333345678
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCC-HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008835 434 PPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP-IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE 512 (551)
Q Consensus 434 ~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~-v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~ 512 (551)
+.|++.+.+....+.+.|..+|..++.+...-. .. ++.+...+.+.++.+|..++..|..+....+.....+..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999998888899999999999988644111 12 455666677889999999999998887655411111111
Q ss_pred ----cCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 513 ----LDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 513 ----~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
..+++.+...+.++++++|..|..++..+.+...
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3478888899999999999999999999976543
No 107
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0016 Score=67.48 Aligned_cols=271 Identities=16% Similarity=0.130 Sum_probs=180.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA-EAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
+.++-|-..+...++..+.-.+.=|..|-. .....++. -....+-|..+|++++++++..+=.+|.+.-..-.++..
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 455555566666677777666666666642 22233332 235678889999999999998777777665432112212
Q ss_pred Hh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChh-HHHHHHH---HHHHhcc
Q 008835 345 IV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPR-GKKDAAT---AIFNLSI 419 (551)
Q Consensus 345 i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~-~~~~a~~---aL~nL~~ 419 (551)
.+ -...++.++.-+.++.++++..|..-+..+-..........-+|++..++..+.+..+. .+..+.. .|..+..
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 21 24567778888888899999888877776655554444455567777788777766553 3332222 2333333
Q ss_pred CCChHHHHHHc-CChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 420 YQGNKARAVRA-GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 420 ~~~~~~~l~~~-g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
....... ++. .++..|...+++...+.+-.++..+..|-....++-........+.|+.-|.+.++.+-..+..+|.+
T Consensus 325 ~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 325 SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 3322222 333 35778888888888889999999999988877777766677899999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 499 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 499 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+|...... .. -.++..|+++....+.-....+.-++|.|+-
T Consensus 404 i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 404 ICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 99866331 10 1245566666666666677777777777653
No 108
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.75 E-value=0.00014 Score=58.24 Aligned_cols=86 Identities=38% Similarity=0.544 Sum_probs=70.9
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhh
Q 008835 310 IPLLVELL-SSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA 388 (551)
Q Consensus 310 i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~ 388 (551)
||.|++.| +++++.++..++.+|+.+- ...+++.|+++++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 68899999 8889999999999999552 234689999999999999999999999987 23
Q ss_pred hCcHHHHHHHhccCC-hhHHHHHHHHHH
Q 008835 389 AGAIPALIRLLCDGT-PRGKKDAATAIF 415 (551)
Q Consensus 389 ~~~i~~Lv~lL~~~~-~~~~~~a~~aL~ 415 (551)
..+++.|.+++.+++ ..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 458999999998764 455888888874
No 109
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.73 E-value=0.0033 Score=65.31 Aligned_cols=153 Identities=25% Similarity=0.206 Sum_probs=119.0
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHh
Q 008835 308 GAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 386 (551)
Q Consensus 308 g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (551)
.+++.|+..|. .++..+...++.++... + ...+++.+++.|.+.++.++..++.+|..+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--E--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC---------
Confidence 46888999995 56777777666555422 1 1124899999999999999999999988542
Q ss_pred hhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH
Q 008835 387 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 466 (551)
Q Consensus 387 ~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~ 466 (551)
.....+.|+.+|++.++.++..++.++.. ......+.|..+|.+.+..+...|+.+|..+...
T Consensus 115 -~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----- 177 (410)
T TIGR02270 115 -GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR----- 177 (410)
T ss_pred -chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----
Confidence 34578999999999999999888877766 1223467889999999999999999999887653
Q ss_pred HhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 467 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 467 ~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
..++.|...+.+.++.+|..|+..|..+..
T Consensus 178 -----~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 178 -----LSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -----cchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 567778888888999999999988876643
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.70 E-value=0.0071 Score=63.91 Aligned_cols=250 Identities=17% Similarity=0.228 Sum_probs=162.8
Q ss_pred HHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHH
Q 008835 265 RAAIDALLGKL----------ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-----DPRTQEHAV 329 (551)
Q Consensus 265 ~~~i~~Lv~~L----------~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~ 329 (551)
...+..|...- ...++.+..+|+++|.|+...++..|..+.+.|+.+.+++.|+.. +.++.-...
T Consensus 21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~ 100 (446)
T PF10165_consen 21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDS 100 (446)
T ss_pred HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHH
Confidence 34555555544 245688999999999999999999999999999999999999886 788888888
Q ss_pred HHHHhccc-CCCchHHHh-hcCCcHHHHHHHhcC-----------------CHHHHHHHHHHHHHhcCCcchhHHhhhhC
Q 008835 330 TALLNLSI-NDSNKGTIV-NAGAIPDIVDVLKNG-----------------SMEARENAAATLFSLSVIDENKVAIGAAG 390 (551)
Q Consensus 330 ~~L~nLs~-~~~~~~~i~-~~g~i~~Lv~~L~~~-----------------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~ 390 (551)
++|+-+.. ....+..++ +.+++..|+..|... +.++...++.+++|+.........-....
T Consensus 101 RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~ 180 (446)
T PF10165_consen 101 RLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSP 180 (446)
T ss_pred HHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhH
Confidence 88887765 455666666 457888888877421 23456678889999976543322211123
Q ss_pred cHHHHHHHhcc---------CChhHHHHHHHHHHHhccCCCh--------HH----HHHHcCChHHHHHhhcc-----CC
Q 008835 391 AIPALIRLLCD---------GTPRGKKDAATAIFNLSIYQGN--------KA----RAVRAGIVPPLMRFLKD-----AG 444 (551)
Q Consensus 391 ~i~~Lv~lL~~---------~~~~~~~~a~~aL~nL~~~~~~--------~~----~l~~~g~i~~Lv~lL~~-----~~ 444 (551)
.++.++.++.. ........++.+|.|+-..... .. ......++..|+.+|.. ..
T Consensus 181 ~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~ 260 (446)
T PF10165_consen 181 SIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEA 260 (446)
T ss_pred HHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCc
Confidence 44444444321 1235567778888887221100 00 01123357777777743 11
Q ss_pred ---hhhHHHHHHHHHHHhcC-hhhHHHhhh----------------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 445 ---GGMVDEALAILAILASH-QEGKTAIGQ----------------AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 445 ---~~~~~~al~~L~nL~~~-~~~~~~i~~----------------~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.+...-.+.+|.+++.. ...|..+.. ...-..|++++.+..+.+|..+...|+.||..+.
T Consensus 261 ~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 261 LKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred ccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 13444566777777775 444443322 2356889999988889999999999999998765
Q ss_pred HHHHHHHHcC
Q 008835 505 EQLKIARELD 514 (551)
Q Consensus 505 ~~~~~~~~~g 514 (551)
.....-+..|
T Consensus 341 ~~~v~~~GyG 350 (446)
T PF10165_consen 341 SRFVKYVGYG 350 (446)
T ss_pred HHHHHHcCch
Confidence 4333333333
No 111
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.69 E-value=0.0023 Score=65.32 Aligned_cols=184 Identities=26% Similarity=0.319 Sum_probs=132.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 387 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (551)
..++.+++++.+++..++..|...++.+. ...+++.+..+|.+.++.++..|+.+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 57889999999999999999998866553 35578999999999999999999998776633
Q ss_pred hhCcHHHHHHHhc-cCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhh------------HHHHHHH
Q 008835 388 AAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGM------------VDEALAI 454 (551)
Q Consensus 388 ~~~~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~------------~~~al~~ 454 (551)
...++.|+.++. +.+..++..++.+|..+-.. ..+.+++..+.+..... +..+...
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 347899999998 58889999999999887442 33778888887654322 1111111
Q ss_pred HHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHH
Q 008835 455 LAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKA 534 (551)
Q Consensus 455 L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A 534 (551)
|. .+.+...++.+..++......++..|+..|..+...+ ..+...+...+.+++..++.++
T Consensus 173 l~----------~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 173 LG----------ELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HH----------HcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHH
Confidence 11 2223467899999999888999999999999988764 2233444455555555555555
Q ss_pred HHHHHH
Q 008835 535 GSILEL 540 (551)
Q Consensus 535 ~~lL~~ 540 (551)
...|..
T Consensus 234 ~~~l~~ 239 (335)
T COG1413 234 LLALGE 239 (335)
T ss_pred HHHhcc
Confidence 544443
No 112
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.0025 Score=70.37 Aligned_cols=208 Identities=20% Similarity=0.198 Sum_probs=158.6
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHh-cccCCCchHHHhhcCCcHHHHHHHhcC---CHHHHHHHHHHHHHhcCCc
Q 008835 305 AEAGAIPLLVELLSSTDPRTQEHAVTALLN-LSINDSNKGTIVNAGAIPDIVDVLKNG---SMEARENAAATLFSLSVID 380 (551)
Q Consensus 305 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n-Ls~~~~~~~~i~~~g~i~~Lv~~L~~~---~~~~~~~aa~~L~~Ls~~~ 380 (551)
..-|+.|..+++|+++-.+++-.-+-+=.. |+.++..+..+++.++-.-++.+|..+ ++|-+..|+-+|..+..+-
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 345999999999999888877655544444 567877788888888888888888873 4688888888888887663
Q ss_pred -chhHHhhhhCcHHHHHHHhccC-ChhHHHHHHHHHHHhcc-CCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH
Q 008835 381 -ENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI 457 (551)
Q Consensus 381 -~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~n 457 (551)
-.+....+.+.+...+..|.++ .+-.+...+-.|..|-. +++.|..=++.++...|..+|.++-++++..|+.+|..
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 3566666778999899999886 46778889999999876 45566667788999999999999999999999999998
Q ss_pred HhcC-----hhhHHHh-----------hhCCCH----HHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008835 458 LASH-----QEGKTAI-----------GQAEPI----PVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE 512 (551)
Q Consensus 458 L~~~-----~~~~~~i-----------~~~~~v----~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~ 512 (551)
+-++ ++....+ .-+..+ ..++.++..+++-++...+.+|..+..+...+...+.-
T Consensus 669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 8774 2222111 112233 37778888899999999888999988877555544433
No 113
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.66 E-value=0.00069 Score=68.47 Aligned_cols=181 Identities=17% Similarity=0.189 Sum_probs=142.5
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHH--HHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhc-CCHHHHHHHHHHHHHhc
Q 008835 301 RVCIAEAGAIPLLVELLSSTDPRT--QEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLS 377 (551)
Q Consensus 301 r~~i~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls 377 (551)
.+.+...|++..|++++..++.+. +..+...|-.+. ..+|++.++.-| +..++.+-+. ..++.....+.+|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 445667799999999999987665 778888777653 456788887766 5555555543 35788888999999987
Q ss_pred CCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC--ChHHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 008835 378 VID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ--GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAI 454 (551)
Q Consensus 378 ~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~ 454 (551)
... +....+++.|++..++-..+..++.+...++.+|.|.+.+. ..+.+|++..+-.-|..+-.+.++-++.+|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 665 46777888899999998888889999999999999998765 456679999998999888888888888999999
Q ss_pred HHHHhcChhhHHHhhhCCCHHHHHHHHhc
Q 008835 455 LAILASHQEGKTAIGQAEPIPVLMEVIRT 483 (551)
Q Consensus 455 L~nL~~~~~~~~~i~~~~~v~~L~~lL~~ 483 (551)
.+.|+.+.+.-..+...|.+..+-.++.+
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence 99999988877777777655544444443
No 114
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.66 E-value=4.8e-05 Score=59.05 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=34.4
Q ss_pred cccccccccCcC-Cee-ccCcccccHHHHHHHHHh--CCCCCCCCccccc
Q 008835 174 FRCPISLELMKD-PVI-VSTGQTYERSCIQKWLDA--GHKTCPKTQQTLL 219 (551)
Q Consensus 174 ~~Cpic~~~~~~-Pv~-~~cgh~~~~~ci~~~~~~--~~~~CP~c~~~l~ 219 (551)
-.||.|...-.+ |++ -.|||.|...||.+|++. .+.+||+||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 445655544433 544 489999999999999995 3578999998764
No 115
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.66 E-value=7.5e-05 Score=50.45 Aligned_cols=41 Identities=32% Similarity=0.433 Sum_probs=38.0
Q ss_pred ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 461 HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 461 ~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
+++++..+++.|+++.|+.+|.++++.+++.|+++|.|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999984
No 116
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.7e-05 Score=77.05 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=40.5
Q ss_pred cccccccccCcCC---eeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 174 FRCPISLELMKDP---VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 174 ~~Cpic~~~~~~P---v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
+.|.||++-+.+- +++||+|.|...||..|+....+.||+|++.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 6999999998743 36899999999999999998667799999866543
No 117
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2e-05 Score=74.92 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=43.9
Q ss_pred ccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCC
Q 008835 175 RCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 222 (551)
Q Consensus 175 ~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~ 222 (551)
.|+||..-+..||.++|+|.||.-||.--...+..+||+||.++++.-
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 599999999999999999999999999888778889999999997653
No 118
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.61 E-value=0.0067 Score=64.13 Aligned_cols=258 Identities=16% Similarity=0.183 Sum_probs=167.0
Q ss_pred HHHHHHHHhhChhhHHHHHhcCCHHHHHHhh----------cCCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCcHHHH
Q 008835 287 AGELRLLAKRNADNRVCIAEAGAIPLLVELL----------SSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIV 355 (551)
Q Consensus 287 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv 355 (551)
+..|+.+++ ++.+...+....++..|.++- ...+..+...|+.+|+|+... +..|....+.|..+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 456666665 455555566555666666654 335789999999999999875 55677777899999999
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHhcCCc-chhHHhhhh-CcHHHHHHHhcc----C-------------ChhHHHHHH
Q 008835 356 DVLKNG-----SMEARENAAATLFSLSVID-ENKVAIGAA-GAIPALIRLLCD----G-------------TPRGKKDAA 411 (551)
Q Consensus 356 ~~L~~~-----~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~-~~i~~Lv~lL~~----~-------------~~~~~~~a~ 411 (551)
+.|+.. +.+..-...++|+-++... +.+..+... +++..++..|.. . +......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999987 6888888999999887654 455555544 777777765532 0 234466789
Q ss_pred HHHHHhccCCChHHHHHHcCChHHHHHhhcc---------CChhhHHHHHHHHHHHhcC-hhh-------HHHh----hh
Q 008835 412 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKD---------AGGGMVDEALAILAILASH-QEG-------KTAI----GQ 470 (551)
Q Consensus 412 ~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~---------~~~~~~~~al~~L~nL~~~-~~~-------~~~i----~~ 470 (551)
++++|+..+......-...+.++.|+.++.. +-......++.+|.|+--. ... ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998765443321223445555554431 2233455666777666211 000 1111 11
Q ss_pred CCCHHHHHHHHhc----CC----HHHHHHHHHHHHHHhcCCHHHHHHHHH----------------cCcHHHHHHHhhhC
Q 008835 471 AEPIPVLMEVIRT----GS----PRNRENAAAVLWAICTGDAEQLKIARE----------------LDAEEALKELSESG 526 (551)
Q Consensus 471 ~~~v~~L~~lL~~----~~----~~~k~~A~~~L~~L~~~~~~~~~~~~~----------------~g~i~~L~~ll~~~ 526 (551)
...+..|+.+|.. .. ...-.--+.+|..++..+...+..+.. ..+-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2457778888753 11 123334566777777776555555532 24677899999998
Q ss_pred ChHHHHHHHHHHHHHHhHH
Q 008835 527 TDRAKRKAGSILELLQRID 545 (551)
Q Consensus 527 ~~~~k~~A~~lL~~l~~~~ 545 (551)
.+.+|..+..+|-.|++-+
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999999997543
No 119
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.032 Score=56.60 Aligned_cols=237 Identities=17% Similarity=0.192 Sum_probs=167.7
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-----h----hHHHHHhcCCHHHHHHhhcCCCH------HHHHHH
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-----D----NRVCIAEAGAIPLLVELLSSTDP------RTQEHA 328 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-----~----~r~~i~~~g~i~~Lv~lL~~~~~------~~~~~a 328 (551)
+..+++.|+.+|.+.+.++....+.-|..|+..+. + --..+++.++++.|++-+..=|. .-..++
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 34578999999999999999999999998875322 2 23446667899999988865333 344567
Q ss_pred HHHHHhcccC-CCchHHHhhcCCcHHHHHHHhcC-C-HHHHHHHHHHHHHhcCCcc-hhHHhhhhCcHHHHHHHhcc---
Q 008835 329 VTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNG-S-MEARENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLCD--- 401 (551)
Q Consensus 329 ~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~-~-~~~~~~aa~~L~~Ls~~~~-~~~~i~~~~~i~~Lv~lL~~--- 401 (551)
+..+-|+... +.....+++.|.+.-|+.-+... . ..-+..|..+|.-+-.+.+ ++...+...++..+++-+.-
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 7778888764 55567777778777777755433 2 3346677788877776654 88888888888888876642
Q ss_pred -C-----ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH---HhhhCC
Q 008835 402 -G-----TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT---AIGQAE 472 (551)
Q Consensus 402 -~-----~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~---~i~~~~ 472 (551)
+ ..+..++-.-.|+.+...+.|+.+++...++....-+++. ....+..++++|-....++++.. .+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 2345667777888888899999999998888776666654 44556779999998888877654 455666
Q ss_pred CHHHHHHHHh-c--------CC-HHHHHHHHHHHHHHhc
Q 008835 473 PIPVLMEVIR-T--------GS-PRNRENAAAVLWAICT 501 (551)
Q Consensus 473 ~v~~L~~lL~-~--------~~-~~~k~~A~~~L~~L~~ 501 (551)
++..+..+.. . .+ .+.-++.+.+|+++-.
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 7666665443 2 22 4556778888877654
No 120
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0046 Score=60.13 Aligned_cols=277 Identities=15% Similarity=0.140 Sum_probs=179.0
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHH--HHhhcCCCHHHHHHHHHHHHhccc-CCC
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLL--VELLSSTDPRTQEHAVTALLNLSI-NDS 340 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~nLs~-~~~ 340 (551)
+.+.++.++..+-..+.++...|...|..++. .+..-..+.+......+ .++-...+.-.+......+..++. .++
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 55778888888888889999999999999986 55555566655444333 233333455566666666666644 444
Q ss_pred chHHHhhcCCcHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCC--hhHHHHHH----HH
Q 008835 341 NKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT--PRGKKDAA----TA 413 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~--~~~~~~a~----~a 413 (551)
.-...-..|.++.|..-|+. .+.-++.++......|...+..+..+.+.|.|..+.+++...+ +=-+..++ +.
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 45555578888888888876 4667888999999999999999999999999999999886532 21122232 33
Q ss_pred HHHhccCCChHHHHHHc--CChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCC--HHHHHHHHhcCC-HHH
Q 008835 414 IFNLSIYQGNKARAVRA--GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP--IPVLMEVIRTGS-PRN 488 (551)
Q Consensus 414 L~nL~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~--v~~L~~lL~~~~-~~~ 488 (551)
+.+....+-.-..+++. -+|....+++...++..++.|+.++..+.++.+|.+.+..+|- ...++--..+.+ ..-
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence 44444333222223322 2355666777778999999999999999999999999988764 344433333333 334
Q ss_pred HHHHHHHHHHHhcCC---HHHH----------HHHH----H---cCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 489 RENAAAVLWAICTGD---AEQL----------KIAR----E---LDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 489 k~~A~~~L~~L~~~~---~~~~----------~~~~----~---~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
++.++.+|.+++..- ++.. -.+. + ..-......+++...+++.-.|.+.+.-+
T Consensus 365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAi 437 (524)
T KOG4413|consen 365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAI 437 (524)
T ss_pred HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence 566777777777522 1111 0111 1 12233445566666777777766655544
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.54 E-value=0.00026 Score=56.67 Aligned_cols=86 Identities=35% Similarity=0.452 Sum_probs=70.1
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh
Q 008835 268 IDALLGKL-ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 346 (551)
Q Consensus 268 i~~Lv~~L-~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 346 (551)
|+.|++.| ++.++.++..+++.|..+-. ..++|.|+.+++++++.++..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899999 78899999999998884421 145899999999999999999999999873
Q ss_pred hcCCcHHHHHHHhcC-CHHHHHHHHHHHH
Q 008835 347 NAGAIPDIVDVLKNG-SMEARENAAATLF 374 (551)
Q Consensus 347 ~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~ 374 (551)
...+++.|.+++.++ +..++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 355899999999886 4566888888774
No 122
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=5.1e-05 Score=82.19 Aligned_cols=48 Identities=29% Similarity=0.708 Sum_probs=42.4
Q ss_pred CCCcccccccccCcC-----CeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 171 PDDFRCPISLELMKD-----PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-----Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
..+-.|+||.+.|.. |-.++|||.|+..|+..|++. ..+||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 447799999999998 778999999999999999997 788999998443
No 123
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00012 Score=68.89 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=42.2
Q ss_pred CCCCCcccccccccCcCCeec-cCcccccHHHHHHHHHh-CCCCCCCCccccc
Q 008835 169 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDA-GHKTCPKTQQTLL 219 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~-~~~~CP~c~~~l~ 219 (551)
.-..+..||+|++-...|.+. +|||.||-.||..-+.. ..++||.|+....
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345678899999999999875 69999999999987763 3589999997654
No 124
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0029 Score=65.27 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=144.0
Q ss_pred HHHHHHhcccC-CCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhHHhhhhCcHHHHHHHhccCChh
Q 008835 328 AVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTPR 405 (551)
Q Consensus 328 a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~ 405 (551)
++..|..++.. .-.|.-+.+..+.++|+++|.+++.-+.-.+...+.|+-.. ..-+..+.+.|+|..|+.++.+.+..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 33444445433 23356666788999999999997666666666777776543 45678888899999999999998889
Q ss_pred HHHHHHHHHHHhccCCCh--HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC----hhhHHHhhhC----CCHH
Q 008835 406 GKKDAATAIFNLSIYQGN--KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH----QEGKTAIGQA----EPIP 475 (551)
Q Consensus 406 ~~~~a~~aL~nL~~~~~~--~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~----~~~~~~i~~~----~~v~ 475 (551)
.+....|.|.++-.+..+ +-+++..-++..++++..++.-.+++.++.+|.|+..+ ++.+...... -...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999886654 34577888899999999999999999999999999773 2233333322 1456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHHhh
Q 008835 476 VLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE-LDAEEALKELSE 524 (551)
Q Consensus 476 ~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~ 524 (551)
.|++.++..+|-..+..+.+|.+++..++.....+.+ ...+..+.+++.
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 7778888888887788899999988766555544443 345555555543
No 125
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.37 E-value=0.00044 Score=46.42 Aligned_cols=39 Identities=41% Similarity=0.587 Sum_probs=36.1
Q ss_pred hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 008835 298 ADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS 336 (551)
Q Consensus 298 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 336 (551)
++++..+.+.|++|.|+++|.+++++++..|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888999999999999999999999999999999987
No 126
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00016 Score=70.57 Aligned_cols=48 Identities=25% Similarity=0.677 Sum_probs=40.0
Q ss_pred CCCcccccccccCcCC-------------eeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 171 PDDFRCPISLELMKDP-------------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P-------------v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.++-.|.||++-|..| --+||||.+.-.|+..|+++ ..+||.||.++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 4678899999875433 45899999999999999986 778999999854
No 127
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.019 Score=60.64 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=146.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..++.++....+....++..|..+...+...-+..... -.+|.++.-+..........++..|+.++...+..-..
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence 34455555555556777777777766665432211111 13444444444446677888999999888776666666
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 425 (551)
.-...+|.+.+.|-+..+++++.+-.+|..++..-+|... ...+|.|++-+.+.+..+. .++..|..-+..
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV----- 362 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTP-ECLDSLGATTFV----- 362 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchH-HHHHhhcceeee-----
Confidence 6788999999999999999999999999999887766652 2367888888876543222 233333322211
Q ss_pred HHHHcCChHHHHHhh----ccCChhhHHHHHHHHHHHhcChhhHHHhhhC--CCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008835 426 RAVRAGIVPPLMRFL----KDAGGGMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAVLWAI 499 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL----~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~--~~v~~L~~lL~~~~~~~k~~A~~~L~~L 499 (551)
..++.-.+..++++| ...+..+...++.++.|+|.--+....+... ..+|.+-..+.+..|++|..+..+|..+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 123334444555555 4466778889999999999965555555432 3555665666666799999999999776
Q ss_pred hcC
Q 008835 500 CTG 502 (551)
Q Consensus 500 ~~~ 502 (551)
-..
T Consensus 443 ~e~ 445 (569)
T KOG1242|consen 443 LER 445 (569)
T ss_pred HHH
Confidence 653
No 128
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0038 Score=65.91 Aligned_cols=219 Identities=18% Similarity=0.159 Sum_probs=148.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH---hccc---CC
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALL---NLSI---ND 339 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~---nLs~---~~ 339 (551)
..+.-|+....+.++.++..|+..|..|.....-.+. .....++.+++++..++..|+.++. |... ..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3444488888899999999999999888763322222 2456788999999999988865554 4431 11
Q ss_pred CchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc---------------------------------------
Q 008835 340 SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--------------------------------------- 380 (551)
Q Consensus 340 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--------------------------------------- 380 (551)
++-+.=....++..+.+.+++.+..+|..|+.+|+.+-...
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 11111112346777888888777777666666655432111
Q ss_pred ------------chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhH
Q 008835 381 ------------ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMV 448 (551)
Q Consensus 381 ------------~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 448 (551)
.....|..+|+-..++.-|.++-.++++.|...++.|+...+.-. ..++.-|++++.+....++
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHH
Confidence 011224445666777777777677999999999999988655432 1246779999999889999
Q ss_pred HHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008835 449 DEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 499 (551)
Q Consensus 449 ~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L 499 (551)
..|+.+|..++.+-. ++..-++.+++.|.+.++++|+..-.+|.+.
T Consensus 428 L~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999988732 2334567778888888888887766655543
No 129
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0011 Score=73.69 Aligned_cols=73 Identities=32% Similarity=0.504 Sum_probs=66.9
Q ss_pred CCCCCCcccccccccCcCCeecc-CcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcC
Q 008835 168 PVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNG 241 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~-cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~ 241 (551)
.++|++|.-|+...+|.|||++| +|++.||.-|++++-. ..+-|.||.+++...++||..++.-|..|..++.
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 46999999999999999999998 9999999999999985 5668999999999999999999999999977643
No 130
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.29 E-value=8.3e-05 Score=66.05 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=39.9
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.|.|-||.+-+..||++.|||.||..|.-+-+.. ..+|-.|+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 3899999999999999999999999998877765 566999987553
No 131
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.027 Score=60.28 Aligned_cols=252 Identities=19% Similarity=0.219 Sum_probs=153.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHhcccCCCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
..++.|++.|..+|+.++..|+..|..|++.+|.+.-.++ |.+.++|... |--+....+...++|+-.++-
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA-----P~ffkllttSsNNWmLIKiiKLF~aLtplEPR--- 252 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA-----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--- 252 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc-----HHHHHHHhccCCCeehHHHHHHHhhccccCch---
Confidence 4678888888888888888888888888888877665443 7777777553 334455566666677643221
Q ss_pred HhhcCCcHHHHHHHhcCC-HHHHHHHHHHHHHh--cCC-cchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 345 IVNAGAIPDIVDVLKNGS-MEARENAAATLFSL--SVI-DENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~L--s~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
+ ....+++|.+++.+.. +.+...+..++... +.. +++-..+ .-++..|-.++.+.++..+..++-+++.+...
T Consensus 253 L-gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 253 L-GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred h-hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 0 1235788888887764 44555555555433 222 1221111 12566777778888999999999999988765
Q ss_pred CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAI 499 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~-~~~k~~A~~~L~~L 499 (551)
+.. .+.+ --..++.+|.+.++.++-.|+..|.-+.....- .+ .+..|+..+...+ ...+..-+.-+..+
T Consensus 330 Hp~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl-~e-----IVk~LM~~~~~ae~t~yrdell~~II~i 399 (877)
T KOG1059|consen 330 HPK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKNL-ME-----IVKTLMKHVEKAEGTNYRDELLTRIISI 399 (877)
T ss_pred CHH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhhH-HH-----HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 432 2211 134567889999999999999999887764322 22 3455655554333 35566666667777
Q ss_pred hcCCHHHHHHHHHc-CcHHHHHHHhhh-CChHHHHHHHHHHHH
Q 008835 500 CTGDAEQLKIAREL-DAEEALKELSES-GTDRAKRKAGSILEL 540 (551)
Q Consensus 500 ~~~~~~~~~~~~~~-g~i~~L~~ll~~-~~~~~k~~A~~lL~~ 540 (551)
|+.+. -..+.+- =.+..|++|..- |+..+...|..++-.
T Consensus 400 CS~sn--Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 400 CSQSN--YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred hhhhh--hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 77552 1222211 124445555432 244444444444443
No 132
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.27 E-value=0.1 Score=49.10 Aligned_cols=233 Identities=12% Similarity=0.116 Sum_probs=150.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh-cCCHHHHHHhh------------cCCCHHHHHHHHHHHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELL------------SSTDPRTQEHAVTALL 333 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL------------~~~~~~~~~~a~~~L~ 333 (551)
.+..++-.+.++ +.++.|+.+|..--+..++-...+-. -|....|+.=. ......-..+|+..|-
T Consensus 27 k~~~~i~~l~~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ 104 (293)
T KOG3036|consen 27 KAYQLILSLVSP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ 104 (293)
T ss_pred chhhHHHHhhCC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH
Confidence 355666666544 45666766666544433332222222 24333333211 1123344567787788
Q ss_pred hcccCCCchHHHhhcCCcHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCcc--hhHHhhhhCcHHHHHHHhccCChhH
Q 008835 334 NLSINDSNKGTIVNAGAIPDIVDVLKNG-----SMEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRLLCDGTPRG 406 (551)
Q Consensus 334 nLs~~~~~~~~i~~~g~i~~Lv~~L~~~-----~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~lL~~~~~~~ 406 (551)
-++.+++.|..+..+.+---+-.+|..+ .+-.|-.++.++..|..+++ .-..+...++||..++.+..|++..
T Consensus 105 cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelS 184 (293)
T KOG3036|consen 105 CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELS 184 (293)
T ss_pred HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHH
Confidence 8899999999998876544455555432 35678899999999987764 3445566799999999999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHH--------cCChHHHHHhh-ccCChhhHHHHHHHHHHHhcChhhHHHhhhC---CCH
Q 008835 407 KKDAATAIFNLSIYQGNKARAVR--------AGIVPPLMRFL-KDAGGGMVDEALAILAILASHQEGKTAIGQA---EPI 474 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~--------~g~i~~Lv~lL-~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~---~~v 474 (551)
+.-|..++..+-.++.+-..+.. .-++..++.-+ +.++..+..+++.+..+|+.++..|.++..- +.-
T Consensus 185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lr 264 (293)
T KOG3036|consen 185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLR 264 (293)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhc
Confidence 99999999998887766544332 12333444333 3478899999999999999999998887641 222
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 008835 475 P-VLMEVIRTGSPRNRENAAAVLWAICTG 502 (551)
Q Consensus 475 ~-~L~~lL~~~~~~~k~~A~~~L~~L~~~ 502 (551)
. ....+++ .++..+..-...+.++|.+
T Consensus 265 d~tfs~~l~-~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 265 DGTFSLLLK-DDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred cchHHHHHh-cChhHHHHHHHHHHHhccC
Confidence 2 2222333 4556666666677777643
No 133
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.07 Score=59.47 Aligned_cols=256 Identities=20% Similarity=0.173 Sum_probs=164.8
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 267 AIDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 267 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..+-+...|. .+++.+|.-|+..+..+.. +.+.-..+++.|.+..|+.+|.+ -|..++.++.+|..|+...+.-..-
T Consensus 1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred ccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3444455554 4567788888888877764 77788889999999999998866 6788899999999998876665555
Q ss_pred hhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcc--hhHH-------------------------------------
Q 008835 346 VNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDE--NKVA------------------------------------- 385 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~--~~~~------------------------------------- 385 (551)
++.|++.-+..++-.. ++..+..++..|..|..+.- .+..
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiW 1929 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIW 1929 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccccc
Confidence 5677777777666543 45666666666665432210 0000
Q ss_pred ---------------------------------------------------------hhh------------hCcHHHHH
Q 008835 386 ---------------------------------------------------------IGA------------AGAIPALI 396 (551)
Q Consensus 386 ---------------------------------------------------------i~~------------~~~i~~Lv 396 (551)
+.. .+.+..++
T Consensus 1930 n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~l 2009 (2235)
T KOG1789|consen 1930 NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVL 2009 (2235)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHH
Confidence 000 01111222
Q ss_pred HHhccCChh--HHHHHHHHHHHhccCCChHH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCC
Q 008835 397 RLLCDGTPR--GKKDAATAIFNLSIYQGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP 473 (551)
Q Consensus 397 ~lL~~~~~~--~~~~a~~aL~nL~~~~~~~~-~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~ 473 (551)
+++...+++ ....--.|+..|...+++-. ++-..|.+|.++..+...+..+-..|+.+|..|+.+.-+..++....+
T Consensus 2010 elm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2010 ELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC 2089 (2235)
T ss_pred HHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc
Confidence 222222111 11111222333333333222 334568899999988776666668899999999999999999999888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhh
Q 008835 474 IPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES 525 (551)
Q Consensus 474 v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~ 525 (551)
+..++..+... +..---|+.+|-.+.... .+.+....+.|.++.|+.++..
T Consensus 2090 i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2090 IDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred chhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 88888888643 233347777777766543 4566677889999999999864
No 134
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00017 Score=68.51 Aligned_cols=47 Identities=19% Similarity=0.540 Sum_probs=38.8
Q ss_pred cccccccccCc--CC-eeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 174 FRCPISLELMK--DP-VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 174 ~~Cpic~~~~~--~P-v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
-.|.||++-+. |- +++||.|.|.+.|+.+|+..-...||+|+.+++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999998774 33 3589999999999999998656789999987753
No 135
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00015 Score=69.00 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=40.1
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.|.|-||.+.+.+||++.|||+||..|-.+.+.. ...|+.|.+...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 4779999999999999999999999998888875 456999987653
No 136
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=97.11 E-value=0.0036 Score=57.83 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=92.9
Q ss_pred ChhHHHHHHHHHHHhccCCChHHHHHHc----------------CChHHHHHhhcc------CChhhHHHHHHHHHHHhc
Q 008835 403 TPRGKKDAATAIFNLSIYQGNKARAVRA----------------GIVPPLMRFLKD------AGGGMVDEALAILAILAS 460 (551)
Q Consensus 403 ~~~~~~~a~~aL~nL~~~~~~~~~l~~~----------------g~i~~Lv~lL~~------~~~~~~~~al~~L~nL~~ 460 (551)
+......++..|+||+..++....+++. ..+..|+..+.. ....-.+....+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3445667888999999988887765532 257788888865 334557889999999999
Q ss_pred ChhhHHHhhhC--CC--HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCcHHHHHHHhh
Q 008835 461 HQEGKTAIGQA--EP--IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE--LDAEEALKELSE 524 (551)
Q Consensus 461 ~~~~~~~i~~~--~~--v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~ 524 (551)
.+++|..+.+. +. +..|+.++.+.+..-|.-++++|.|+|.....+...+-. -++++.|+.-+.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999864 44 788888888888777888999999999988766555543 356776665544
No 137
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0013 Score=68.60 Aligned_cols=100 Identities=29% Similarity=0.422 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhhhhhhcCCCCCCcccccccccCCCCCCCCCCcccccccccCcCCeec-cCcccccHHHHHHHHHhCCC
Q 008835 131 CFEEISSLLRKLKDFVLIENPEVDITEGEKGLMKHRSPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHK 209 (551)
Q Consensus 131 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~ 209 (551)
.++.+..+..+..+.-..+.. ++...+++|++|.-|+...+|+|||++ .+|-+.+|+-|..++-. ..
T Consensus 823 ~IE~l~~f~nr~E~~r~~ea~-----------EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~ 890 (929)
T COG5113 823 QIEELRSFINRLEKVRVIEAV-----------EEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DG 890 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----------hhhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CC
Confidence 566666666666544322111 122356899999999999999999997 47789999999998875 56
Q ss_pred CCCCCcccccCCCCccchhhHHHHHHHHHhcCC
Q 008835 210 TCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 242 (551)
Q Consensus 210 ~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 242 (551)
+.|.-|.|++..+++||..++.-|..+....+.
T Consensus 891 tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 891 TDPFNRMPLTLDDVTPNAELREKINRFYKCKGQ 923 (929)
T ss_pred CCccccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence 799999999999999999999999998766544
No 138
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.069 Score=57.34 Aligned_cols=219 Identities=16% Similarity=0.179 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhccc-CCCchH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKG 343 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~ 343 (551)
++..+.++.+|+++-+-++..|+..+..+.-..++.- . ..+|.|+.-|.++|+.++-.|+.+++.||. ++.|--
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl---r--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL---R--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH---h--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 4677889999999999999999999988876555432 1 457999999999999999999999999997 455533
Q ss_pred HHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCCh-hHHHHHHHHHH--Hhcc
Q 008835 344 TIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIF--NLSI 419 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~aL~--nL~~ 419 (551)
. .-|.+.++|... +--+.......+.+|+..+. .++ ...+++|.+++.+... .....+..++. |++.
T Consensus 218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 2 346677777644 22334445666677765542 222 3578999999987643 23333333332 4555
Q ss_pred CCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 420 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 420 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
...+....+.. ++..|-.++.+.++.++..++-++..+.. |+...++- -..+++.|.+.++.+|-.|...|..
T Consensus 289 g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence 44344433322 57888888999999999999988888776 56554432 3467888888999999999999998
Q ss_pred HhcCC
Q 008835 499 ICTGD 503 (551)
Q Consensus 499 L~~~~ 503 (551)
+....
T Consensus 363 mVskk 367 (877)
T KOG1059|consen 363 MVSKK 367 (877)
T ss_pred Hhhhh
Confidence 87643
No 139
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.12 Score=57.69 Aligned_cols=139 Identities=18% Similarity=0.259 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHh----cCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHH
Q 008835 282 EQRAAAGELRLLAKRNADNRVCIAE----AGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVD 356 (551)
Q Consensus 282 ~~~~a~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ 356 (551)
-..-++.+|+++.+.+++-...+.. -|-.+.+..+|.. +++.++..|+.++..+..+.+.-.-|+..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 4456888899998888855444433 2778888888866 5889999999999888878888888999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccC-ChhHHHHHHHHHHHhccCC
Q 008835 357 VLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 357 ~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~ 421 (551)
+|.+ -+..++-++.+|+.|++.....+...++|++..+.+++... +++.+..|+..+..|..++
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 9866 45678889999999999988777777888888888887654 4677778888888886543
No 140
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.03 E-value=0.00031 Score=71.46 Aligned_cols=52 Identities=19% Similarity=0.412 Sum_probs=44.7
Q ss_pred CCCCcccccccccCcCCeeccCcccccHHHHHHHHHh----CCCCCCCCcccccCC
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLHT 221 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~----~~~~CP~c~~~l~~~ 221 (551)
-.++..|.+|.+.-.||+...|.|+|||-||.++... .+-+||.|..+++..
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3456789999999999999999999999999888863 357999999888655
No 141
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0062 Score=64.42 Aligned_cols=215 Identities=19% Similarity=0.146 Sum_probs=141.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc------chhHHh
Q 008835 313 LVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID------ENKVAI 386 (551)
Q Consensus 313 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~------~~~~~i 386 (551)
|..+..+.|+.++.+|+..|+.|+...... .-.....++.+++.+..+|..|..+++-.+... ++...=
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 667777889999999999999887532221 223567788888888899998876665443221 111111
Q ss_pred hhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh-------------------------------------------
Q 008835 387 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN------------------------------------------- 423 (551)
Q Consensus 387 ~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~------------------------------------------- 423 (551)
....++..+.+.+++.+..++..|+++|..+....+.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 1124666777777777666666666666554322110
Q ss_pred --------HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHH
Q 008835 424 --------KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAV 495 (551)
Q Consensus 424 --------~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~ 495 (551)
-..++.+|+-..++.-|.++--+++..|+..+..|+.+..+-. ..++..|++++.+.-..+|..|+.+
T Consensus 358 psee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL~ai~a 433 (823)
T KOG2259|consen 358 PSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRLKAIFA 433 (823)
T ss_pred chhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1123344555667777766666788999999999988533211 1367788999988888999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 496 LWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 496 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
|..++.+ ..+++.-++.++.-+.+.++++++....+|.+.+
T Consensus 434 L~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 434 LTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9888764 2334445666666677777777777777766543
No 142
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.053 Score=58.55 Aligned_cols=230 Identities=13% Similarity=0.132 Sum_probs=138.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 346 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 346 (551)
.++++-..+++++|..+..|+..+..+-.+....+..-...+++|.++.++.++...++..+.|+|+.++..-. ..+.
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~ 442 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAII 442 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcc
Confidence 45555568889999999999999999887666666666667899999999998888899999999999986532 2222
Q ss_pred h----cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cc---h-hHHhhhhCcHHHHHHH-hcc-----C-ChhHHHH
Q 008835 347 N----AGAIPDIVDVLKNGSMEARENAAATLFSLSVI--DE---N-KVAIGAAGAIPALIRL-LCD-----G-TPRGKKD 409 (551)
Q Consensus 347 ~----~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~---~-~~~i~~~~~i~~Lv~l-L~~-----~-~~~~~~~ 409 (551)
. .+.+..++.-|. +.|.+..+++|++.+|+.. +. + ...... ..++.++.- ++. + ....+..
T Consensus 443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence 2 333444444443 2578899999999999732 11 1 111111 244444443 322 1 2456778
Q ss_pred HHHHHHHhccCCChHHHHHHcCCh----HHHHHhhc-----cC----ChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHH
Q 008835 410 AATAIFNLSIYQGNKARAVRAGIV----PPLMRFLK-----DA----GGGMVDEALAILAILASH-QEGKTAIGQAEPIP 475 (551)
Q Consensus 410 a~~aL~nL~~~~~~~~~l~~~g~i----~~Lv~lL~-----~~----~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~ 475 (551)
|-.+|..|..+...-..-.-.+.. ..|-+.++ .. -.+++..-+.+|..+-.. +..+..+.+ ....
T Consensus 521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~ 599 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG 599 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence 888999887765432221112222 22222222 11 123445555666655442 222222222 3566
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHhc
Q 008835 476 VLMEVIRT-GSPRNRENAAAVLWAICT 501 (551)
Q Consensus 476 ~L~~lL~~-~~~~~k~~A~~~L~~L~~ 501 (551)
.+++++.+ ++.-+.+.|..++..+..
T Consensus 600 lflri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred HHHHHHcCCccccchHHHHHHHHHHHH
Confidence 77788877 445566776666666554
No 143
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.95 E-value=0.015 Score=63.95 Aligned_cols=265 Identities=15% Similarity=0.115 Sum_probs=151.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHHHhhc
Q 008835 270 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNA 348 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~ 348 (551)
.|++++.++|.+.+.-|...|..-...+.-+-..=.+...+..|+++|.+.+.++|..|+.+|+-|+.. .+.+- .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l----e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL----E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH----H
Confidence 788899999988898888877654432221211222345788999999999999999999999988731 11111 1
Q ss_pred CCcHHHHHHHhcCCHHHHHHHHHHH-HHhcCCcchhHHhhhhCcHHHHHHHhccC------ChhHHHHHHHHHHHhccC-
Q 008835 349 GAIPDIVDVLKNGSMEARENAAATL-FSLSVIDENKVAIGAAGAIPALIRLLCDG------TPRGKKDAATAIFNLSIY- 420 (551)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L-~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~------~~~~~~~a~~aL~nL~~~- 420 (551)
..++.|..-+-++....+.-+.-.| ..++.............+++.+...|..+ ...++-.++-.++.+-..
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 1233333333344444443333222 22222222222233334555555554432 233566666666654332
Q ss_pred CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAI 499 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~-~~~~k~~A~~~L~~L 499 (551)
.+--.. ...+....++.-+.+....++..|+.+|+.|+....+- ... +.+..|++-|... .+....--+.+|..+
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~-ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD-LYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-HHH--HHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 111111 33455666777777778889999999999998853221 111 2344444444332 233334445666777
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHHh---hhCChHHHHHHHHHHHHHHh
Q 008835 500 CTGDAEQLKIARELDAEEALKELS---ESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 500 ~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~k~~A~~lL~~l~~ 543 (551)
|...+. +.--.-...++.+.++. +..+++.+++...++..+-+
T Consensus 241 ~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 241 CRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 764421 11111124677888887 67789999999999987754
No 144
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.92 E-value=0.0019 Score=46.64 Aligned_cols=55 Identities=31% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 363 MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 363 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
+.+|..|+++|.+++........-....+++.|+.+|.+++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887665554445568999999999999999999999999875
No 145
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.066 Score=57.88 Aligned_cols=266 Identities=14% Similarity=0.097 Sum_probs=169.1
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhChhhHHHHHhc-CCHHHHHHhhcC--CCHHHHHHHHHHHHhcccC---
Q 008835 266 AAIDALLGKLANGNV-EEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSS--TDPRTQEHAVTALLNLSIN--- 338 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~-~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~--- 338 (551)
+.+..|++......+ ..+..++.+|+.+|.+-. .....-.. .++-.++.-.+. ++..+|-.|+.+|.|--..
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 455555555554444 378889999999997532 22333332 355566665554 4778999999999885321
Q ss_pred ----CCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHH
Q 008835 339 ----DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA 413 (551)
Q Consensus 339 ----~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~a 413 (551)
+..|.. ++...++.-.+++.+++..|..+|..+-... +.-..-.....+..-+..+++.++++...+...
T Consensus 208 nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 208 NFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred hhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 122222 3445556666778999999999998875432 222222223445555666778888888888887
Q ss_pred HHHhccCCCh-----------------HHHHH--HcCChHHHHHhhccC-------ChhhHHHHHHHHHHHhcChhhHHH
Q 008835 414 IFNLSIYQGN-----------------KARAV--RAGIVPPLMRFLKDA-------GGGMVDEALAILAILASHQEGKTA 467 (551)
Q Consensus 414 L~nL~~~~~~-----------------~~~l~--~~g~i~~Lv~lL~~~-------~~~~~~~al~~L~nL~~~~~~~~~ 467 (551)
=+++|...-. ..... -.+++|.|+++|... +......|-.+|.-++..
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~------ 356 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC------ 356 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH------
Confidence 7777642211 11111 136788899988651 112233344444433332
Q ss_pred hhhCCCHHHHHH----HHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 468 IGQAEPIPVLME----VIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 468 i~~~~~v~~L~~----lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
.....++.++. -+++++-+.++.|+-+...+-.+....+..-+..++++.++.++.+..--++..+.|.|..+.+
T Consensus 357 -~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 357 -VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred -hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 11234444444 4456778889999999999888876666666677889999999998888899999999988866
Q ss_pred H
Q 008835 544 I 544 (551)
Q Consensus 544 ~ 544 (551)
+
T Consensus 436 ~ 436 (859)
T KOG1241|consen 436 F 436 (859)
T ss_pred h
Confidence 4
No 146
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.90 E-value=0.023 Score=50.26 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=97.5
Q ss_pred HHhhhhCcHHHHHHHhccCCh------hHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHH
Q 008835 384 VAIGAAGAIPALIRLLCDGTP------RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAIL 455 (551)
Q Consensus 384 ~~i~~~~~i~~Lv~lL~~~~~------~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~L 455 (551)
..+...+++..|++++.++.. .....++.++.+|-.++-.-...++...|...+..+.. .+..+...|+.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 345567899999999998763 66778899999988876555567778888999998875 3678899999999
Q ss_pred HHHhcChhh-HHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 456 AILASHQEG-KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 456 ~nL~~~~~~-~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.++..+... -..+.++=-++.|+..|+.+++.++.+|++.+-.|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 999987665 4555555579999999999999999999999988766543
No 147
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.89 E-value=0.045 Score=60.39 Aligned_cols=238 Identities=13% Similarity=0.099 Sum_probs=137.9
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHH-HHHHHhcccCCCc
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHA-VTALLNLSINDSN 341 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a-~~~L~nLs~~~~~ 341 (551)
.+...+..+++.|...+.++|..|+++|.-++..-.+.+..- .+..|..-+-++-...+..+ +.....++.-++.
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 456789999999999999999999999999986544433221 13334333333333333322 2222222222322
Q ss_pred hHHHhhcCCcHHHHHHHhcC------CHHHHHHHHHHHHHhcC-CcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHH
Q 008835 342 KGTIVNAGAIPDIVDVLKNG------SMEARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 414 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~------~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL 414 (551)
-.......+++.+...|..+ ...++..++..+..+-. ....-.. ...+.+..++.-|.+.-..+++.|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 23333445556666555543 22355555555543311 1111000 1124555555556666678899999999
Q ss_pred HHhccCCChHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHH---hcCCHHHHH
Q 008835 415 FNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI---RTGSPRNRE 490 (551)
Q Consensus 415 ~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL---~~~~~~~k~ 490 (551)
..|+...++- +-.+++..|++-|.. ........-+.+|+.++.....|.----...+|.+.++. ...+++.|+
T Consensus 199 ~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 199 GHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence 9998764432 333456666666644 333444445666677766544443222235789999999 567789999
Q ss_pred HHHHHHHHHhcCCHHHHH
Q 008835 491 NAAAVLWAICTGDAEQLK 508 (551)
Q Consensus 491 ~A~~~L~~L~~~~~~~~~ 508 (551)
.+..++-.+-...|....
T Consensus 276 ~~lQale~fl~rcp~ei~ 293 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKEIL 293 (1233)
T ss_pred HHHHHHHHHHHhChhhhc
Confidence 999999887776654443
No 148
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.88 E-value=0.0022 Score=42.90 Aligned_cols=39 Identities=44% Similarity=0.474 Sum_probs=35.4
Q ss_pred chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 381 ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 381 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
+++..+.+.|+++.|+++|++++.+++..++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467788889999999999999999999999999999973
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.87 E-value=0.00057 Score=68.68 Aligned_cols=48 Identities=23% Similarity=0.561 Sum_probs=39.3
Q ss_pred CCCCCcccccccccCcCCe----eccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 169 VIPDDFRCPISLELMKDPV----IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv----~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.+.+--+||+|++-|-+-+ .+.|.|+|.-.|+.+|+ ..+||+||...+
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcC
Confidence 3445568999999998776 36899999999999996 468999997554
No 150
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.76 E-value=0.0028 Score=63.46 Aligned_cols=51 Identities=25% Similarity=0.485 Sum_probs=44.8
Q ss_pred cccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCcccccCCCCcc
Q 008835 174 FRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 225 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 225 (551)
+.|.|++++..+||+- .+||.|+++-|++++.+ +.+||.++++++..++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 4699999999999984 69999999999999996 667999999998776654
No 151
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.76 E-value=0.0095 Score=48.67 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 008835 447 MVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIR--TGSPRNRENAAAVLWAICTGDAEQLKIAREL 513 (551)
Q Consensus 447 ~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~--~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~ 513 (551)
++...+.+|+||+. ++..+..+.+.|+++.++.... ..+|-++|+|+.++.+||.+++++...+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 35668899999998 5788899999999999998765 4569999999999999999999888877554
No 152
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.75 E-value=0.002 Score=46.56 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008835 322 PRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSL 376 (551)
Q Consensus 322 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~L 376 (551)
+.+|..|+++|++++........-....+++.|+.+|++++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887655544445677899999999999999999999999875
No 153
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.72 E-value=0.092 Score=51.21 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=147.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHH-HhcCCHHHHHHhhcC--CCHHHHHHHHHHHHhcccCCCchHHHhh-cCCc
Q 008835 276 ANGNVEEQRAAAGELRLLAKRNADNRVCI-AEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIVN-AGAI 351 (551)
Q Consensus 276 ~s~~~~~~~~a~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i 351 (551)
++-++-.+.-|+.++.++.. .++.|..+ ++...-..++.+++. ++..+|.+.+-+++.++.+++....|-+ .+.+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34455577888899999886 56666554 344566778888877 4688999999999999887665533322 3456
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhcCCc--chhHHhhhhCcHHHHHHHhccC---ChhHHHHHHHH------------
Q 008835 352 PDIVDVLKNG-SMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDG---TPRGKKDAATA------------ 413 (551)
Q Consensus 352 ~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~---~~~~~~~a~~a------------ 413 (551)
..++.+.+.. ...+-.-++.++.|+..-. +.-..+.-.|-+.+-++.|... +++.+.+.-..
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 7777777765 3566777888888887622 2333334446566666666542 33332221111
Q ss_pred -----HHHh-----ccCC---------ChHHHHHHc--CChHHHHHhhccCChh-hHHHHHHHHHHHhc-ChhhHHHhhh
Q 008835 414 -----IFNL-----SIYQ---------GNKARAVRA--GIVPPLMRFLKDAGGG-MVDEALAILAILAS-HQEGKTAIGQ 470 (551)
Q Consensus 414 -----L~nL-----~~~~---------~~~~~l~~~--g~i~~Lv~lL~~~~~~-~~~~al~~L~nL~~-~~~~~~~i~~ 470 (551)
+..| +-.+ .|...+.+. .++..|.++++...+. ....|+.=+..+.. .|+++..+..
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K 397 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK 397 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence 1111 1111 123334432 4688899999875555 44455555555555 7999999999
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 471 AEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 471 ~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
.|+=..+++++.++++++|-+|..++..+.
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999887654
No 154
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00049 Score=64.39 Aligned_cols=57 Identities=21% Similarity=0.421 Sum_probs=44.8
Q ss_pred CCCcccccccccCcCCe----------eccCcccccHHHHHHHHHhCC-CCCCCCcccccCCCCccch
Q 008835 171 PDDFRCPISLELMKDPV----------IVSTGQTYERSCIQKWLDAGH-KTCPKTQQTLLHTALTPNY 227 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv----------~~~cgh~~~~~ci~~~~~~~~-~~CP~c~~~l~~~~~~~n~ 227 (551)
-++-.|.+|.+-+.+.+ .++|+|.|...||..|+--|. .+||-|.+++.......|+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNP 289 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCc
Confidence 35678999998776554 479999999999999998665 6899999887655554443
No 155
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.11 Score=56.58 Aligned_cols=220 Identities=18% Similarity=0.162 Sum_probs=122.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCc
Q 008835 312 LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGA 391 (551)
Q Consensus 312 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~ 391 (551)
.|.+=|++++.-+.-.|+.+|++++..+- .....|.+.++|++.++-+++.|+-+...+-.-...-. ..+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~Em------ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPEM------ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHF 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHHH------hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHh
Confidence 34444566777788899999999975332 23467888899999999999999988877643322211 134
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhccCCC-hHHHHHHcCChHHHHH--------------------------------
Q 008835 392 IPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMR-------------------------------- 438 (551)
Q Consensus 392 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~i~~Lv~-------------------------------- 438 (551)
++....+|++.+..+....+..+..+|.... +-..+-+ .++.|+.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL 258 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL 258 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence 5566666666666666666666666665322 2212221 2333333
Q ss_pred -hhccCChhhHHHHHHHHHHHhcChhhHHHhhh---CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHH---
Q 008835 439 -FLKDAGGGMVDEALAILAILASHQEGKTAIGQ---AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR--- 511 (551)
Q Consensus 439 -lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~---~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~--- 511 (551)
+|..++.+..+..-.+|+.++++.+.-.-+.. ..+|..+..+. .+...+..|+.+|...-.++..+..++.
T Consensus 259 riLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 259 RILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 33334444444444445544443221111110 01222222221 3456777777777776655533332221
Q ss_pred -------HcCc----HHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 512 -------ELDA----EEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 512 -------~~g~----i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
+..+ =..+++.+++.++-+|++|.+++..|....
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES 381 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence 1111 234567778888999999999888776433
No 156
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0014 Score=63.40 Aligned_cols=54 Identities=22% Similarity=0.471 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 165 HRSPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 165 ~~~~~~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
......|+.-.||+|+.--.+|.++ .+|..||..||.++.. .+.+||+|+.+..
T Consensus 292 e~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 292 ESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred ccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 3344567788999999998888765 5799999999999999 4788999987764
No 157
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.70 E-value=0.12 Score=54.52 Aligned_cols=231 Identities=16% Similarity=0.180 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh--hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA--DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~--~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
...+...+..|++..+.++.+|+.....|++--. .--..+...|. .|.+-|...++++.-..+.++..+-..-..+
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 3577888889999999999999998888775211 11223444453 4667777788888877777776653321111
Q ss_pred -HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch----hHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 343 -GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN----KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 343 -~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~----~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
-+---.|.+|.|.-+|++....+..+....+..++..... +..+ .+--.|+++|++.+.+++..|..++..+
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 1111368999999999999889999999998888766432 2222 2344578888888888888887777776
Q ss_pred ccCCChH---------------H---------HHH-H-cCC---hHHHHHhhccCChhhHHHHHHHHHHHhcC--hhhHH
Q 008835 418 SIYQGNK---------------A---------RAV-R-AGI---VPPLMRFLKDAGGGMVDEALAILAILASH--QEGKT 466 (551)
Q Consensus 418 ~~~~~~~---------------~---------~l~-~-~g~---i~~Lv~lL~~~~~~~~~~al~~L~nL~~~--~~~~~ 466 (551)
+..-+-+ . .++ + .|- +|.|+.=-..++..++.-.+.+++-+-.. ...+.
T Consensus 758 s~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~d 837 (975)
T COG5181 758 SRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLD 837 (975)
T ss_pred HhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6422111 0 011 1 122 23332222235556666666665554442 22222
Q ss_pred HhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 008835 467 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 502 (551)
Q Consensus 467 ~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~ 502 (551)
.+- ...|.|-+-|.+.++--|.-|..++.+|.-+
T Consensus 838 Yvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 838 YVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 222 3455556666666677777788888777654
No 158
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.69 E-value=0.25 Score=51.98 Aligned_cols=263 Identities=20% Similarity=0.152 Sum_probs=133.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch----
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK---- 342 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~---- 342 (551)
..+.|-.+|++.-..++.++++.+..++..+- ...+. ...|..|-.+|.++....|-.|+++|..|+...+.+
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 44555556665556788999999988886551 11111 135778888999999999999999999998643222
Q ss_pred ----HHHh-h-cC--CcHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cchhHHhhh-------------hCcHHHHHHHh
Q 008835 343 ----GTIV-N-AG--AIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGA-------------AGAIPALIRLL 399 (551)
Q Consensus 343 ----~~i~-~-~g--~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~-------------~~~i~~Lv~lL 399 (551)
+.++ + .. ..-++..+|+.|+.+....-...+-++-.+ ++.+..+.. ...+..|...|
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L 421 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSL 421 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 1222 1 11 123456666666555444333333332211 111111100 01222222222
Q ss_pred -ccCChhHHHHHHHHHHHhccCC-ChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHH
Q 008835 400 -CDGTPRGKKDAATAIFNLSIYQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPV 476 (551)
Q Consensus 400 -~~~~~~~~~~a~~aL~nL~~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~ 476 (551)
+.|..+.++.+..+|..+..+. +.+.++ +..|..++.++. .-+-++.+|..|... |.... -...|..
T Consensus 422 ~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~---P~~yvrh 491 (898)
T COG5240 422 LQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCE--YHQITVRILGILGREGPRAKT---PGKYVRH 491 (898)
T ss_pred HhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCC---cchHHHH
Confidence 1233344444444444333221 222221 222333333211 112233333333321 11000 0012344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 477 LMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 477 L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
+..-+--.+..+|..|+.+|...+-+-. ..+....+...|-..+.+.+++++..|.-+|+.++..+
T Consensus 492 IyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 492 IYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 4443334566788888888876654321 11223345666777888999999999999999998544
No 159
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.084 Score=59.85 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=133.5
Q ss_pred cCCCHHHHHHHHHHHHhcccCCCchHHHhh--cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--hhHHhhhhCcHH
Q 008835 318 SSTDPRTQEHAVTALLNLSINDSNKGTIVN--AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGAAGAIP 393 (551)
Q Consensus 318 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~~~i~ 393 (551)
++.+..+|..+..+|..++..+........ ......+...+++....++...+.+|..|-...+ ....+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 345889999999999999876433222221 2233344444444455566666666555532222 22222 23555
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcC------ChHHHHHhhcc----CChhhHHHHHHHHHHHhcC-h
Q 008835 394 ALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAG------IVPPLMRFLKD----AGGGMVDEALAILAILASH-Q 462 (551)
Q Consensus 394 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g------~i~~Lv~lL~~----~~~~~~~~al~~L~nL~~~-~ 462 (551)
-++-.++..+...+..|..+|.+|+. .....+.| .|...+..+.. ....++..-+-++..+... .
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 55555577788889999998888873 11111222 34444444433 2222222212222222221 1
Q ss_pred hhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 463 EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 463 ~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
..-....-.+.+..+..+|.++++.+...|++.+..++..-|+.+..-..+-+++.+..+++.++...+.++..+|..|-
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 11111111245666777778889999999999999999888777766666668999999999999999999999999886
Q ss_pred h
Q 008835 543 R 543 (551)
Q Consensus 543 ~ 543 (551)
+
T Consensus 898 r 898 (1176)
T KOG1248|consen 898 R 898 (1176)
T ss_pred H
Confidence 5
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.028 Score=62.55 Aligned_cols=189 Identities=18% Similarity=0.133 Sum_probs=136.2
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHh---hhhCcHHHHHHHhccCChhHHHHHHHHHHH-hccCCChHHH
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI---GAAGAIPALIRLLCDGTPRGKKDAATAIFN-LSIYQGNKAR 426 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i---~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~~~~~~ 426 (551)
+|.++++|-+.-. |..|+..|..+- +-....+ ..-|++|.+++||++...+.+---+-+=.. |+.++..+..
T Consensus 474 LPiVLQVLLSQvH--RlRAL~LL~RFL--DlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLSQVH--RLRALVLLARFL--DLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHHHHH--HHHHHHHHHHHh--ccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH
Confidence 4555566555322 223444444442 2233333 234999999999999877665543333334 4556556667
Q ss_pred HHHcCChHHHHHhhcc---CChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhc
Q 008835 427 AVRAGIVPPLMRFLKD---AGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICT 501 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~---~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~-~~~~k~~A~~~L~~L~~ 501 (551)
+++.++-.-.+..|.+ -+++-+.-|+.+|+.++.+ +.|+.+..+.+.+...++.|.++ .+-.+..++-+|..|=.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 8888776666666654 1235556688889998885 78899999999999999999986 48899999999999888
Q ss_pred CCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 502 GDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 502 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+.++.+-.=.+.++.+.|+.++.+.-++++..|.-+|..+-.
T Consensus 630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 777666666788999999999999999999999999988865
No 161
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.66 E-value=0.048 Score=58.67 Aligned_cols=151 Identities=14% Similarity=0.165 Sum_probs=106.6
Q ss_pred cHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH---HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHH
Q 008835 391 AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA---RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA 467 (551)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~---~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~ 467 (551)
.+..++..|++.++.++..|+..+..|+..-..+. .+...|+| |.+.|....+++.-..++++..++..-.....
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 45566678899999999999999998876433332 23334443 67778778888877777776666543211100
Q ss_pred h-hhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 468 I-GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 468 i-~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
. =-.+.+|.|..+|++....++++++..+..+|..+++++..--=..+---|++++.+.+..+++.|...+..+.+
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 0 013789999999999999999999999999999887654322112344457788889999999999887776654
No 162
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.66 E-value=0.18 Score=54.50 Aligned_cols=229 Identities=18% Similarity=0.202 Sum_probs=145.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh--HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADN--RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
.+...+..|++.++.++.+|+..+..++.--... -..+...|. .|.+.|...++++.-..+.++..+...-. -..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvig-m~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIG-MTK 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcc-ccc
Confidence 4555667788899999999999998887522111 223444553 47788888899887766666655532110 011
Q ss_pred Hh--hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc----hhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhc
Q 008835 345 IV--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 418 (551)
Q Consensus 345 i~--~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~----~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 418 (551)
+. -.|.+|.|.-+|++....+++++...+..++.... .+..+ .+--.|+++|+..+.+++..|..++..++
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11 35789999999999999999999999999886542 22222 23445778888877888888877777665
Q ss_pred cCCC------------------hHH------HHHH--cC---ChHHHHHhhccCChhhHHHHHHHHHHHhcC--hhhHHH
Q 008835 419 IYQG------------------NKA------RAVR--AG---IVPPLMRFLKDAGGGMVDEALAILAILASH--QEGKTA 467 (551)
Q Consensus 419 ~~~~------------------~~~------~l~~--~g---~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~--~~~~~~ 467 (551)
..-+ +|. .++. .| ++|.|++=-..++..++.-.+..++-+-.. ..++..
T Consensus 954 kaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY 1033 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY 1033 (1172)
T ss_pred HhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH
Confidence 3211 110 1221 12 233333333336667777777777666553 333444
Q ss_pred hhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 468 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 468 i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
+- ...|.|-+-|.+.+.--|.-|+.++.+|+-+-
T Consensus 1034 iy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1034 IY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 43 35666777777677777888888888887653
No 163
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.02 Score=61.95 Aligned_cols=244 Identities=16% Similarity=0.119 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
+..+.++......|.+.+.-+-..+.+-+...++- ..+++..+++=..++++.+|..|++.++-+-.+. +
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----i 118 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----I 118 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-----H
Confidence 34566666666666655555555566666544431 2356778888788889999999998887664221 1
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh-H
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN-K 424 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~ 424 (551)
..-...++.+.++++++.++..++..+.++ .+.+.......|.++.|-+++.+.++.+...|+.+|..+...+.+ -
T Consensus 119 -~ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 -TEYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred -HHHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 122567888999999999999999888887 344556666679999999999999999999999999999875543 2
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 425 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
...+....+..++..+...+..-+...+..+.+=.-.+. +.+. ..+..+...|++.++.+...++.++.++...-+
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 222223344555555554444433333333333222222 1111 234455556666666666666666666665443
Q ss_pred HHHHHHHHcCcHHHHHHHhhhCC
Q 008835 505 EQLKIARELDAEEALKELSESGT 527 (551)
Q Consensus 505 ~~~~~~~~~g~i~~L~~ll~~~~ 527 (551)
. .....-..+-++|+.++....
T Consensus 272 ~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 272 Q-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred H-HHHHHHHHhcccceeeecccc
Confidence 3 222222223444444444443
No 164
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.63 E-value=0.049 Score=60.00 Aligned_cols=138 Identities=22% Similarity=0.197 Sum_probs=68.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhC
Q 008835 311 PLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG 390 (551)
Q Consensus 311 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~ 390 (551)
|-+++...+.|.++++..-.=|.+.+...+....+ ++..+.+=|.++++.+|..|.+++..+-... ....
T Consensus 58 ~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~~e------l~~~ 127 (757)
T COG5096 58 PDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE------LLGN 127 (757)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcChHH------HHHH
Confidence 44444444555555554444444444432221111 2344444455556666666666555442110 1113
Q ss_pred cHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 008835 391 AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 460 (551)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~ 460 (551)
+++++.+++.++++.+++.|+-++.++-..+ +....+.|.+..+..++.+.++.+...|+..|..+..
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 4555555566666666666666666554322 1223344555555555555666666666655555544
No 165
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.62 E-value=0.043 Score=48.63 Aligned_cols=117 Identities=12% Similarity=0.131 Sum_probs=97.4
Q ss_pred HHHHHcCChHHHHHhhccCC------hhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC--HHHHHHHHHHH
Q 008835 425 ARAVRAGIVPPLMRFLKDAG------GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS--PRNRENAAAVL 496 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~------~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~--~~~k~~A~~~L 496 (551)
..+++.|++..|++++.++. ..+...++.++..|-.+.-.-=...+..+|..++.++.... +.+.+.|.++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 46888999999999998754 36778899999999987543334555678999999997644 77889999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 497 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 497 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
-++..+++.....+.++=-++.|+..++.++++.+.+|..++--|
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999988778787877799999999999999999999988766
No 166
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.12 Score=55.35 Aligned_cols=262 Identities=15% Similarity=0.125 Sum_probs=137.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHhcccCCCchH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
..+..+...|.|.++--+.-|+.++.++-. -+.+..+. .-|| ++|.++ ..-++..|+-+|+.|-... -+
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~s--pD 181 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKS--PD 181 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcC--cc
Confidence 456677788888888888889999988853 33444433 3344 666664 3446777777777765431 12
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chhHHhhhhCcHHHHHHHhcc-------------CChhHHH
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCD-------------GTPRGKK 408 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~-------------~~~~~~~ 408 (551)
.+-..+....++.+|.+.+..+...+...+.-|+... +++..+.. ++..|..+... +.+=.+.
T Consensus 182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 2223456777888888776666666666665555332 22222211 11112111111 1233445
Q ss_pred HHHHHHHHhccCCC--hHHHHHHcCChHHHHHhhccC-------ChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHH
Q 008835 409 DAATAIFNLSIYQG--NKARAVRAGIVPPLMRFLKDA-------GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLME 479 (551)
Q Consensus 409 ~a~~aL~nL~~~~~--~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~ 479 (551)
..+++|.+.-.-.+ .+.++. .++..++.....+ +...+...+.-.-+|+.+-+.-..+.. .++..|-.
T Consensus 260 Kl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~ 336 (938)
T KOG1077|consen 260 KLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLGQ 336 (938)
T ss_pred HHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHH
Confidence 55666666533222 233322 2233333333310 011122223333344444322222221 35667777
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh-hCChHHHHHHHHHHHHHHhH
Q 008835 480 VIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 480 lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~l~~~ 544 (551)
+|.+....+|--|..-++.||+... ....+... ...++..++ ..+..++++|..+|..+++.
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEF--SIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccc--hHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 7777777777777777777776542 22222222 555566665 34667777777777777654
No 167
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.037 Score=59.98 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCC
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND 339 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~ 339 (551)
.....+...+++.++.++..|+-....+-. .+.......|+++.|..++.+.++.+..+|+.+|..+....
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 567788889999999999999988888854 34567778899999999999999999999999999987644
No 168
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.49 Score=51.75 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 337 (551)
+..+...++|++.++.++.+|+.+...+-...++--. .+++...++|.+.+..+...++..+..++.
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCEKHHGVLIAGLHLITELCK 208 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhhcCCceeeeHHHHHHHHHh
Confidence 4556666777788888888888887777665554332 234566666666666666666666666654
No 169
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.57 E-value=0.00087 Score=66.68 Aligned_cols=35 Identities=17% Similarity=0.622 Sum_probs=31.4
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~ 205 (551)
.+++.||||...+++|++++|||..|+.|-.....
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57899999999999999999999999999875543
No 170
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.55 E-value=0.27 Score=54.40 Aligned_cols=142 Identities=19% Similarity=0.180 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
...+..+....+.|.+.++-.-..|...++..+ ....+ ++..+.+=|+++|+.+|-.|++++..|=. .=
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~------~e 123 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRV------KE 123 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcCh------HH
Confidence 345556666667777777766667777776555 22222 46788888999999999999999987731 11
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
+-..+++++.+.+.++++.+|.+|+-+++++-.. .+....+.|.+..+..++.+.++.+...|+.+|..+...
T Consensus 124 l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2244688999999999999999999999998543 345556668899999999999999999999999998655
No 171
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.45 E-value=0.14 Score=48.96 Aligned_cols=143 Identities=21% Similarity=0.177 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHHHHhccCCChHHHHH--HcCChHHHHHhhccC-----C-------hhhHHHHHHHHHHHhcChhhHHHh
Q 008835 403 TPRGKKDAATAIFNLSIYQGNKARAV--RAGIVPPLMRFLKDA-----G-------GGMVDEALAILAILASHQEGKTAI 468 (551)
Q Consensus 403 ~~~~~~~a~~aL~nL~~~~~~~~~l~--~~g~i~~Lv~lL~~~-----~-------~~~~~~al~~L~nL~~~~~~~~~i 468 (551)
+++.++.|+.-|+.--..-++.+-++ .-|.+..|++=+.+. . ..-+..|++.|..++++|+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 46677777766665544334444444 247787776644331 1 133567899999999999999999
Q ss_pred hhCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 469 GQAEPIPVLMEVIRTGS-----PRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 469 ~~~~~v~~L~~lL~~~~-----~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
++++..--|..+|.+.+ ...|-.+.+++..|...+ ++....+.+..++|..+..++.|++-.|.-|.-+++.+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99998888888887643 447788899999998755 567788889999999999999999999999999998775
Q ss_pred hHH
Q 008835 543 RID 545 (551)
Q Consensus 543 ~~~ 545 (551)
..|
T Consensus 168 ~dd 170 (262)
T PF04078_consen 168 LDD 170 (262)
T ss_dssp HSH
T ss_pred cch
Confidence 433
No 172
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.00086 Score=46.52 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=38.6
Q ss_pred cccccccccCcCCeeccCcc-cccHHHHHHHHHhCCCCCCCCccccc
Q 008835 174 FRCPISLELMKDPVIVSTGQ-TYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~~cgh-~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
-.|.||.+-..|.|+-.||| -.|..|=.+.+..++..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 45999999999999999999 46888877777767889999998763
No 173
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.38 E-value=0.0026 Score=62.16 Aligned_cols=54 Identities=13% Similarity=0.348 Sum_probs=43.3
Q ss_pred CCCCCcccccccccCcC--Cee--ccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCc
Q 008835 169 VIPDDFRCPISLELMKD--PVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT 224 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~--Pv~--~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 224 (551)
.-...|.|||+...|.. +.+ .+|||.|+..++.+.- ....||.|+.++...+++
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 45678999999999953 332 4999999999999873 356799999999977754
No 174
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.36 E-value=0.014 Score=49.02 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=61.9
Q ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 008835 265 RAAIDALLGKL-ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL 335 (551)
Q Consensus 265 ~~~i~~Lv~~L-~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL 335 (551)
-..+..|+..| .+.++....-|+..|..+++..|..|..+.+.|+-..++.++.++|++++..|+.++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46899999999 455677788899999999999999999999999999999999999999999999988765
No 175
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0029 Score=58.55 Aligned_cols=53 Identities=15% Similarity=0.457 Sum_probs=45.6
Q ss_pred CCcccccccccCcCCe----eccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCcc
Q 008835 172 DDFRCPISLELMKDPV----IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 225 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv----~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 225 (551)
..|.||+|...+.+.+ .-+|||.+|..|.++.+. +...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 6799999999998754 238999999999999887 5788999999999888765
No 176
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.25 E-value=0.18 Score=47.53 Aligned_cols=137 Identities=16% Similarity=0.122 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcChh--hHHHhhhCCCHHHHHH
Q 008835 407 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQE--GKTAIGQAEPIPVLME 479 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~al~~L~nL~~~~~--~~~~i~~~~~v~~L~~ 479 (551)
.-+|+..|..++++++.+..++++.+---|..+|.. +.+-++-.++++++.|....+ ....+...+.||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 457888889999999999999999887777777743 456678889999999998643 3445567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCHH---HHHHH-----HHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 480 VIRTGSPRNRENAAAVLWAICTGDAE---QLKIA-----RELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 480 lL~~~~~~~k~~A~~~L~~L~~~~~~---~~~~~-----~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
.+..|+...|..|..++..+-..+.. .|+.. +..-.-..+.++...+++|+-+-+.++.-.|.+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999887765521 12111 111112233355566677777777766666654
No 177
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.25 E-value=0.19 Score=51.68 Aligned_cols=274 Identities=16% Similarity=0.103 Sum_probs=152.8
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC-CH-HHHHHHHHHHHhcccCCCch
Q 008835 266 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DP-RTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 266 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~-~~~~~a~~~L~nLs~~~~~~ 342 (551)
+.+..+++.|.++ +...++.++-.|..-+. ++..|..+...|.+..+++.+... +. ..-..++.++.-++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 5678888888743 45678888888888885 888999999999999999999553 33 33333444444455555444
Q ss_pred HHHhhcCCcHHHHHHHhcCCH-HHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc---------CChhHHHHHHH
Q 008835 343 GTIVNAGAIPDIVDVLKNGSM-EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD---------GTPRGKKDAAT 412 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~---------~~~~~~~~a~~ 412 (551)
..+...+.+..++.++.-... ......- .....+-.++. ...+..+-..+.. .....+..|+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 444455666666777761100 0000000 00000000000 0111212222211 11233445555
Q ss_pred HHHHhc------------c---CCChHHHHHHcCChHHHHHhhcc----C------------ChhhHHHHHHHHHHHhcC
Q 008835 413 AIFNLS------------I---YQGNKARAVRAGIVPPLMRFLKD----A------------GGGMVDEALAILAILASH 461 (551)
Q Consensus 413 aL~nL~------------~---~~~~~~~l~~~g~i~~Lv~lL~~----~------------~~~~~~~al~~L~nL~~~ 461 (551)
+|-.++ . .+..+..+...|++..+++.+.+ . +....+.++.+|.+.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 555553 0 11224457778899999998862 1 012456789999988874
Q ss_pred -hhhHHHhhhC--CCHHHHHH-HHhc---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhh---------
Q 008835 462 -QEGKTAIGQA--EPIPVLME-VIRT---GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES--------- 525 (551)
Q Consensus 462 -~~~~~~i~~~--~~v~~L~~-lL~~---~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--------- 525 (551)
.+++..+... +.++.+.. ++.. ..+.....+++++.|++.++|..+..+...++...+..+...
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 5566666543 33333333 3332 224446789999999999998888777666544443322211
Q ss_pred -----CChHHHHHHHHHHHHHHhHHHh
Q 008835 526 -----GTDRAKRKAGSILELLQRIDMA 547 (551)
Q Consensus 526 -----~~~~~k~~A~~lL~~l~~~~~~ 547 (551)
..-+..--+..+|-||.++.+.
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCcc
Confidence 1234455566666666665443
No 178
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.24 E-value=0.017 Score=47.20 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHhcccC-CCchHHHhh
Q 008835 283 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSIN-DSNKGTIVN 347 (551)
Q Consensus 283 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~-~~~~~~i~~ 347 (551)
+...+..|.+++..++.+...+.+.|+||.++..-.- .+|-+++.|+.++.||... ++|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567889999999999999999999999999987654 5899999999999999875 677777763
No 179
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.23 E-value=0.027 Score=52.03 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHhcCCcchhHHhhhh----------------CcHHHHHHHhccC------ChhHHHHHHHHHHHhcc
Q 008835 362 SMEARENAAATLFSLSVIDENKVAIGAA----------------GAIPALIRLLCDG------TPRGKKDAATAIFNLSI 419 (551)
Q Consensus 362 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~~----------------~~i~~Lv~lL~~~------~~~~~~~a~~aL~nL~~ 419 (551)
.......++.+|.||+..+.....+... .++..|++.+..| ...-....+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3345566788888888877666544322 3777888877662 23456678999999999
Q ss_pred CCChHHHHHHc--CC--hHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhC---CCHHHHHHHHh
Q 008835 420 YQGNKARAVRA--GI--VPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA---EPIPVLMEVIR 482 (551)
Q Consensus 420 ~~~~~~~l~~~--g~--i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~---~~v~~L~~lL~ 482 (551)
.+++|..+++. +. +..|+.++.+.+..-+.-++++|.|+|...+....+... +.+|.|+--|.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999998863 44 788888888887667778999999999988877777764 45565555554
No 180
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.23 E-value=0.64 Score=52.29 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=148.2
Q ss_pred HHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHh----cCC----HHHHHHH
Q 008835 303 CIAEAGAIPLLVELLSST-----DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK----NGS----MEARENA 369 (551)
Q Consensus 303 ~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~----~~~----~~~~~~a 369 (551)
.+.+.|++..|+.++.+- ........+..|...+.-+.||..+.+.|+++.|++.|. .+. .++-+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 455679999999999762 345555666666666777999999999999999999985 222 4555555
Q ss_pred HHHHHHhcCCcc---hhHHhh----------hhCcHHHHHHHhccC----ChhHHHHHHHHHHHhccCCChHHHHHHcCC
Q 008835 370 AATLFSLSVIDE---NKVAIG----------AAGAIPALIRLLCDG----TPRGKKDAATAIFNLSIYQGNKARAVRAGI 432 (551)
Q Consensus 370 a~~L~~Ls~~~~---~~~~i~----------~~~~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~ 432 (551)
..++..|..... ...... ....+..|++.+.+. ++.+....+++|-+|+.........+-.-
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 555554432211 111000 113466777776653 57888889999999999887765533111
Q ss_pred hHHHHHhh--ccCChhhHHHHHHHHHHHhc----Ch---hhHHHhhhCCCHHHHHHHHhcC--------CHHHHH-----
Q 008835 433 VPPLMRFL--KDAGGGMVDEALAILAILAS----HQ---EGKTAIGQAEPIPVLMEVIRTG--------SPRNRE----- 490 (551)
Q Consensus 433 i~~Lv~lL--~~~~~~~~~~al~~L~nL~~----~~---~~~~~i~~~~~v~~L~~lL~~~--------~~~~k~----- 490 (551)
+.+.+++= ......--...+..+..++. +. .-++.+++.|.+...+.+|... +++.++
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 11111211 10000001223444555544 22 2377889999999999999643 233333
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHHHHhHH
Q 008835 491 ---NAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQRID 545 (551)
Q Consensus 491 ---~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~l~~~~ 545 (551)
.+..+|.-||.+... .+.++..++++.+-.|=+.. +..+-..|.-+|..|.+..
T Consensus 351 sLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 477888888887643 44446667776666664433 5666777878887777633
No 181
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.22 E-value=0.13 Score=49.38 Aligned_cols=142 Identities=20% Similarity=0.169 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHhcCCcchhHHhh-h-hCcHHHHHHHhcc-------CC--h---hHHHHHHHHHHHhccCCChHHHH
Q 008835 362 SMEARENAAATLFSLSVIDENKVAIG-A-AGAIPALIRLLCD-------GT--P---RGKKDAATAIFNLSIYQGNKARA 427 (551)
Q Consensus 362 ~~~~~~~aa~~L~~Ls~~~~~~~~i~-~-~~~i~~Lv~lL~~-------~~--~---~~~~~a~~aL~nL~~~~~~~~~l 427 (551)
+++.|+.|..-|+.--..-+.-..+. . -|.+..|++=+-+ ++ . .-.-+|+..|..++++++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778877776665433322222222 2 2777776643221 11 1 22346777788899999999999
Q ss_pred HHcCChHHHHHhhccC-----ChhhHHHHHHHHHHHhcC--hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 428 VRAGIVPPLMRFLKDA-----GGGMVDEALAILAILASH--QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 428 ~~~g~i~~Lv~lL~~~-----~~~~~~~al~~L~nL~~~--~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
+++.+.--|.++|... -+.++-.++++++.|... ++....+...+.+|..++.++.|+...|..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999988888888652 245667889999999884 455667788899999999999999999999999998877
Q ss_pred cCC
Q 008835 501 TGD 503 (551)
Q Consensus 501 ~~~ 503 (551)
..+
T Consensus 168 ~dd 170 (262)
T PF04078_consen 168 LDD 170 (262)
T ss_dssp HSH
T ss_pred cch
Confidence 654
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.10 E-value=0.12 Score=52.11 Aligned_cols=197 Identities=13% Similarity=0.126 Sum_probs=143.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRV-----CIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLSIN 338 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~-----~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 338 (551)
+.+..|+..|..-+.+.+..+.....++.+.....+. .+... ..+..|+.-- +++++--.+-..|.....+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence 6788899999999999999999999988876555443 33322 2333333332 3566666777778888888
Q ss_pred CCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhHHhhhh---CcHHHHHHHhccCChhHHHHHHHHH
Q 008835 339 DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAA---GAIPALIRLLCDGTPRGKKDAATAI 414 (551)
Q Consensus 339 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~---~~i~~Lv~lL~~~~~~~~~~a~~aL 414 (551)
+.....+.....+..+.+....++-++...|..++..+-.. .......... .++.....+|.+++.-++..++..|
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 77667777888899999999999999999999999875433 3332222222 6777888899999999999999999
Q ss_pred HHhccCCChHHHHH----HcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh
Q 008835 415 FNLSIYQGNKARAV----RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG 464 (551)
Q Consensus 415 ~nL~~~~~~~~~l~----~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~ 464 (551)
..|..+..|...|. +..-+..++.+|++.+..++..|..++.-...+|..
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999988876544 345688899999999999999999999998887643
No 183
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=1.1 Score=48.43 Aligned_cols=255 Identities=15% Similarity=0.126 Sum_probs=151.1
Q ss_pred HHhcCCC--HHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC--CCchHHHhhc
Q 008835 273 GKLANGN--VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN--DSNKGTIVNA 348 (551)
Q Consensus 273 ~~L~s~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~ 348 (551)
..|-|++ .-++..|+-+|..|-+.+++ .+-..+-...++.+|.+.+..+...+...+--|++. +..+..+.
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-- 227 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-- 227 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--
Confidence 4454443 34667777777777765553 222224577889999888877777777777667653 22232221
Q ss_pred CCcHHHHHHHhc-------------CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccC--ChhHH-----H
Q 008835 349 GAIPDIVDVLKN-------------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG--TPRGK-----K 408 (551)
Q Consensus 349 g~i~~Lv~~L~~-------------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~-----~ 408 (551)
-++..|..+... +.|-+....+++|.++-..++.-....-..++..++...+.. +..++ .
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence 111222222111 245677788888887744444332222224555555554422 11121 1
Q ss_pred HHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc-CCHH
Q 008835 409 DAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPR 487 (551)
Q Consensus 409 ~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~-~~~~ 487 (551)
..+--..+|+.+-+.-..++ ..++..|-++|.+.+..++..|+..+..|++.....+++..+ ...++..|++ .+..
T Consensus 308 aVLFeaI~l~~h~D~e~~ll-~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELL-SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 22222234444322222222 235788999999999999999999999999987777777665 7788888884 5678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 488 NRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 488 ~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
++..|+..|..+|-.+ +... ++.-|++.+.+.+..+|+.-.-=..+|.
T Consensus 385 irrravDLLY~mcD~~--Nak~-----IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVS--NAKQ-----IVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHHHHHHHhchh--hHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 9999999999999754 3333 3445666666666666655444333443
No 184
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.32 Score=46.46 Aligned_cols=195 Identities=25% Similarity=0.288 Sum_probs=122.9
Q ss_pred cCCHHHHHHhhcCC--CHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhH
Q 008835 307 AGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV 384 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~ 384 (551)
..+||.|+..|... .+.+|..|..+|+++. + .+.++.+-+..+++..++++.+.-++..+-..+....
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 46899999998774 6778889999998775 2 3344555555556667777777667666532211000
Q ss_pred ------Hh-------hhhCcHHHHHHHhccCC-hhH-HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHH
Q 008835 385 ------AI-------GAAGAIPALIRLLCDGT-PRG-KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVD 449 (551)
Q Consensus 385 ------~i-------~~~~~i~~Lv~lL~~~~-~~~-~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~ 449 (551)
.+ ...+-+..|-..|.+.+ +.. +..|+-.|.|+-. ...|..|.+-+..++.-.+.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRH 205 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHH
Confidence 00 01122334443333332 222 2223333333211 11355566666666677778
Q ss_pred HHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCC
Q 008835 450 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGT 527 (551)
Q Consensus 450 ~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 527 (551)
.+..+++.|-+. -+|+.|.+.|.. ..+.+|..|+.+|..++... +++.|.+++.+..
T Consensus 206 EvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 206 EVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCcH
Confidence 888888777553 478899888875 45889999999999988532 6777888888888
Q ss_pred hHHHHHHHHHHHHHH
Q 008835 528 DRAKRKAGSILELLQ 542 (551)
Q Consensus 528 ~~~k~~A~~lL~~l~ 542 (551)
+-+++.+..+|.++.
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888764
No 185
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.53 Score=51.37 Aligned_cols=260 Identities=20% Similarity=0.165 Sum_probs=157.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CC----
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DS---- 340 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~---- 340 (551)
...+++-+.|.+....+..+|++.+..+...++ |.. . .++..|-.++.++.+.+|-.|+++|..+|.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l-~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--REL-A--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhc-c--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 456667777777788899999999999876443 221 1 2788888899999999999999999998752 21
Q ss_pred -ch--H-HHhhc---CCcHHHHHHHhcCCHHH----HHHHHHHHHHhcCCcchhHHhh-------------hhCcHHHHH
Q 008835 341 -NK--G-TIVNA---GAIPDIVDVLKNGSMEA----RENAAATLFSLSVIDENKVAIG-------------AAGAIPALI 396 (551)
Q Consensus 341 -~~--~-~i~~~---g~i~~Lv~~L~~~~~~~----~~~aa~~L~~Ls~~~~~~~~i~-------------~~~~i~~Lv 396 (551)
|+ + .|-+. =+-.++..+|+.|+..- ....+....++|. +++..+. ..+.+..|.
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 11 1 12111 13445667777775443 3333344444432 2221111 114555566
Q ss_pred HHhcc-CChhHHHHHHHHHHHhcc-CCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCH
Q 008835 397 RLLCD-GTPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPI 474 (551)
Q Consensus 397 ~lL~~-~~~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v 474 (551)
++|++ |..+.+.....++..+.. .++.+. .++..|..++.++ +...-+..+|..|.... -....-...+
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~Eg--P~a~~Pskyi 468 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEG--PKAPNPSKYI 468 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccC--CCCCCcchhh
Confidence 66554 344556666666655544 333332 2345566666543 23355666666655421 1111122455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 475 PVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 475 ~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
..+...+.-.+..+|..|+.+|.++..+.+ .....+...|...+.+.+..++..|.-.|+.+.+-++
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg~~~~-----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~ 535 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFGAQDV-----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDD 535 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhh
Confidence 566666666778899999999999885442 1223345556677888899999999999999985443
No 186
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0047 Score=62.74 Aligned_cols=50 Identities=18% Similarity=0.513 Sum_probs=38.6
Q ss_pred CCCCcccccccccCc-----------------CCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 170 IPDDFRCPISLELMK-----------------DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~-----------------~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
+...--|+||+.... +-+.+||.|.|.+.|+++|.+.-.-.||.||.+++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 455567999986321 13346999999999999999965568999999875
No 187
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.90 E-value=0.0074 Score=45.60 Aligned_cols=45 Identities=31% Similarity=0.617 Sum_probs=34.4
Q ss_pred cccccccccCc----CCee-ccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 174 FRCPISLELMK----DPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 174 ~~Cpic~~~~~----~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
-.||-|.--|. =|+. =.|.|.|...||++|++. ...||+++++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 46777776552 1333 379999999999999997 667999998764
No 188
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0048 Score=61.75 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=40.6
Q ss_pred CCCcccccccccCcCCe-----e---ccCcccccHHHHHHHHHhC------CCCCCCCccccc
Q 008835 171 PDDFRCPISLELMKDPV-----I---VSTGQTYERSCIQKWLDAG------HKTCPKTQQTLL 219 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv-----~---~~cgh~~~~~ci~~~~~~~------~~~CP~c~~~l~ 219 (551)
-.+..|-||++...++. . .+|.|+||..||.+|-... .+.||.||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 56889999999988877 3 5699999999999998543 368999997654
No 189
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.79 E-value=0.72 Score=46.31 Aligned_cols=192 Identities=20% Similarity=0.216 Sum_probs=109.5
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh--CcHHHHHHHhccCChhHHHHHHHHHHHhccC--C-ChHH
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLSIY--Q-GNKA 425 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~-~~~~ 425 (551)
+...+..+...+...|+.++..+.++.........+... ..+..+...++.|..+-+..|+.++.-++.. . ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 334455555566788898988888776444333333332 5677888888888776677787777776654 2 2333
Q ss_pred HHHHcCChHHHHHhhccCCh--hhHHHHHHHHHHHhcCh-hhHHHhhh-CCCHHHHH--HHHhc-C---------CHHHH
Q 008835 426 RAVRAGIVPPLMRFLKDAGG--GMVDEALAILAILASHQ-EGKTAIGQ-AEPIPVLM--EVIRT-G---------SPRNR 489 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~~--~~~~~al~~L~nL~~~~-~~~~~i~~-~~~v~~L~--~lL~~-~---------~~~~k 489 (551)
.+. ....|.|...+.+... .++..|+.+|+.++... ..-..+.. ...+..+. .+++. + ++.+.
T Consensus 125 ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 333 3578888888887543 34455665666554421 11111110 01222111 11221 1 13445
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 490 ENAAAVLWAICT-GDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 490 ~~A~~~L~~L~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
..|+..-.-|.. -++....... ...++.|..++.+.+..+|..|-+.|-.|-+.
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 555433333332 2222233333 34689999999999999999999999888553
No 190
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0067 Score=57.91 Aligned_cols=49 Identities=20% Similarity=0.485 Sum_probs=40.0
Q ss_pred cccccc-ccCcCCee----ccCcccccHHHHHHHHHhCCCCCCCCcccccCCCC
Q 008835 175 RCPISL-ELMKDPVI----VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 223 (551)
Q Consensus 175 ~Cpic~-~~~~~Pv~----~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~ 223 (551)
.||.|. ..+..|-+ -+|||+.|.+|+...|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 599997 45566643 38999999999999999999999999988765443
No 191
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.70 E-value=0.012 Score=41.22 Aligned_cols=41 Identities=24% Similarity=0.675 Sum_probs=32.1
Q ss_pred ccccccc--cCcCCeeccCc-----ccccHHHHHHHHHh-CCCCCCCCc
Q 008835 175 RCPISLE--LMKDPVIVSTG-----QTYERSCIQKWLDA-GHKTCPKTQ 215 (551)
Q Consensus 175 ~Cpic~~--~~~~Pv~~~cg-----h~~~~~ci~~~~~~-~~~~CP~c~ 215 (551)
.|-||++ .-.+|.+.||. +.+.+.|+.+|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788886 44677888885 66899999999986 356899985
No 192
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.70 E-value=0.4 Score=52.47 Aligned_cols=239 Identities=17% Similarity=0.113 Sum_probs=156.4
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH-hcccCCCchHHHhhcCCcHHHHHHHhcCC-HHHHHHHHHHHH
Q 008835 297 NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALL-NLSINDSNKGTIVNAGAIPDIVDVLKNGS-MEARENAAATLF 374 (551)
Q Consensus 297 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~ 374 (551)
...-|...++.|+...|+++..-..+..+.++..+|. .++.. ..+ ....++++...+.+.. .--.-.++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4445666778899999999998888888888888887 22221 111 1234455555554432 112346778888
Q ss_pred HhcCCcc-hhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHH-HHH-cCChHHHHHhhccCChhhHHHH
Q 008835 375 SLSVIDE-NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR-AVR-AGIVPPLMRFLKDAGGGMVDEA 451 (551)
Q Consensus 375 ~Ls~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~-l~~-~g~i~~Lv~lL~~~~~~~~~~a 451 (551)
||+..++ .+..|....+++.+-.++-..++..+..++..+.||..++---.+ +++ ...++.....+...+....-.+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9987764 566677776677777777778889999999999999988765544 444 3455655555555444555555
Q ss_pred HHHHHHHhcChhh-HHHhh-hCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChH
Q 008835 452 LAILAILASHQEG-KTAIG-QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDR 529 (551)
Q Consensus 452 l~~L~nL~~~~~~-~~~i~-~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 529 (551)
.+++..+....++ ...+. .......++.++.++++.++...+.+.+++...+.+....+.....++.+...-.-.-..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 5666645443332 22122 236788888999999999999999999998877777777777776676666554444344
Q ss_pred HHHHHHHHHHH
Q 008835 530 AKRKAGSILEL 540 (551)
Q Consensus 530 ~k~~A~~lL~~ 540 (551)
.++.+...|..
T Consensus 728 ~~~~~~~~l~~ 738 (748)
T KOG4151|consen 728 KREDAAPCLSA 738 (748)
T ss_pred hhhhhhhHHHH
Confidence 44555544443
No 193
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.69 E-value=0.14 Score=55.91 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=140.4
Q ss_pred cCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHH-HhcCCcchhHHhhhhCcHHHHHHHhccCCh-hHHHHHHHHH
Q 008835 337 INDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLF-SLSVIDENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAI 414 (551)
Q Consensus 337 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~-~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~aL 414 (551)
.....+...+..|+...|+.+...+.++.+-.+..+|. .++....- ...+++++.+.+++... .....++.++
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 34445667778999999999999998888888888887 33222110 12566777777665432 2355789999
Q ss_pred HHhccCCC-hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHH-hhh-CCCHHHHHHHHhcCCHHHHHH
Q 008835 415 FNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA-IGQ-AEPIPVLMEVIRTGSPRNREN 491 (551)
Q Consensus 415 ~nL~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~-i~~-~~~v~~L~~lL~~~~~~~k~~ 491 (551)
.||+..++ .+..++..-.++.+-.++.+.++..+..++..+.||..++..-.. +.+ ...++.....+..........
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 99988554 566788888888888888889999999999999999998876443 344 357777777777766666777
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHcCcHHHHHHHhhhCChHHHHHHHHH
Q 008835 492 AAAVLWAICTGDAEQLK-IARELDAEEALKELSESGTDRAKRKAGSI 537 (551)
Q Consensus 492 A~~~L~~L~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~k~~A~~l 537 (551)
+++++..+......++. ..--......+..++.++++.++......
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~ 693 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVI 693 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhh
Confidence 77777767766666665 33334567778888888888777655543
No 194
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.57 E-value=0.0036 Score=47.64 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=23.3
Q ss_pred CcccccccccCc-C---Ceec----cCcccccHHHHHHHHHh--CC--------CCCCCCccccc
Q 008835 173 DFRCPISLELMK-D---PVIV----STGQTYERSCIQKWLDA--GH--------KTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~~-~---Pv~~----~cgh~~~~~ci~~~~~~--~~--------~~CP~c~~~l~ 219 (551)
+..|+||..... + |+.. .|+++|...|+.+||.. +. .+||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999998654 2 4442 69999999999999984 11 24999998774
No 195
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.72 Score=50.44 Aligned_cols=211 Identities=17% Similarity=0.135 Sum_probs=137.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 346 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 346 (551)
.-..|..+|.|.....+.+|.+.|..+...+.+. ....|..|+...+.|.+++...---|..-+....+-..+
T Consensus 36 ~~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL- 108 (968)
T KOG1060|consen 36 RHDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL- 108 (968)
T ss_pred ChHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-
Confidence 3467888998888888889998766554434432 245688999999999999988776666666543332221
Q ss_pred hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHH
Q 008835 347 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 426 (551)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 426 (551)
-|..+-+-|+++++.+|..|+++|..+-.. +...=++-.+-+...+.++-+++.|+.||-.|-+-+.+...
T Consensus 109 ---SIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 ---SINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred ---eHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 356677789999999999999988766322 11111122222334456788999999999988764443332
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 427 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
..+..+-.+|.+.++.++-.|+.+...+|-+ .-+.|. +-...+..+|-.-+...|-..+..|..-|+
T Consensus 180 ----qL~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 180 ----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred ----HHHHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 2244566678888999999999888888753 222222 335566666655555556666666555443
No 196
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.56 E-value=0.22 Score=52.68 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=98.6
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCC----chHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch
Q 008835 307 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS----NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN 382 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~ 382 (551)
.|.+|.|..+|++....++.+.+..++.++.... .|+.|. +--.|+++|++.+.+++.+|..++..+|..-..
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence 4899999999999999999999999999987532 244443 223578888999999999999888887643211
Q ss_pred hH------------------------Hhhhh--C---cHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCCh
Q 008835 383 KV------------------------AIGAA--G---AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIV 433 (551)
Q Consensus 383 ~~------------------------~i~~~--~---~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i 433 (551)
+. .|+.. | ++|.|+.=-.+++..++.-.+++++.+..+-.+...=.-.-+.
T Consensus 764 qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~it 843 (975)
T COG5181 764 QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSIT 843 (975)
T ss_pred HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 01111 2 2333332222334455566666666655443333222223345
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcChhh
Q 008835 434 PPLMRFLKDAGGGMVDEALAILAILASHQEG 464 (551)
Q Consensus 434 ~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~ 464 (551)
|.|-+.|.+.++.-+..|..++..|+-++.+
T Consensus 844 PlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 844 PLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 6666677777777788888888888876543
No 197
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.52 E-value=0.062 Score=41.05 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHHHhhhCC
Q 008835 407 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAE 472 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~~~~i~~~~ 472 (551)
.+.|++++.|+++.+.+...+-+.++++.++++... +...++-.|..+|.-++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 578999999999988888888888999999999975 667888999999999999999998887655
No 198
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.50 E-value=0.66 Score=46.58 Aligned_cols=185 Identities=21% Similarity=0.284 Sum_probs=103.7
Q ss_pred HhhcCCCHHHHHHHHHHHHhcccCCCchHHHh--hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC---cchhHHhhhh
Q 008835 315 ELLSSTDPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI---DENKVAIGAA 389 (551)
Q Consensus 315 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~---~~~~~~i~~~ 389 (551)
..+.......|+.++..+.++....-....+. ....++.+.+.++.|..+-+..|+.++.-++.. ......+. .
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~ 128 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-E 128 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-H
Confidence 33444556777777777777654332223332 234678888889988876666777777766544 12222332 3
Q ss_pred CcHHHHHHHhccCC--hhHHHHHHHHHHHhccCCChHH-HHHH-cCChHHHH--Hhhcc----------CChhhHHHHHH
Q 008835 390 GAIPALIRLLCDGT--PRGKKDAATAIFNLSIYQGNKA-RAVR-AGIVPPLM--RFLKD----------AGGGMVDEALA 453 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~~~-~l~~-~g~i~~Lv--~lL~~----------~~~~~~~~al~ 453 (551)
...|.|...+.+++ ...+..++.+|+-++.....-. .+.. ...+..+. ..... +++.++..|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 57788888888764 3455555656665544221111 1110 01111111 11111 12456777776
Q ss_pred HHHHHhcC-hhh-HHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 454 ILAILASH-QEG-KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 454 ~L~nL~~~-~~~-~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
.-+-|... +.. ..... ...++.|..+|.+.+..+|..|-.+|.-|..
T Consensus 209 aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66665553 332 12222 3579999999999999999888777665543
No 199
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.49 E-value=0.091 Score=42.82 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=55.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
..+++++..+.+.+.++|..|+..|.+++......... .-..++..|..++.+.++++|..|.-+-+.|+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 47899999999999999999999999999754322211 22458889999999999999998877777664
No 200
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.0096 Score=59.49 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=39.2
Q ss_pred CCCcccccccccCc---CCeeccCcccccHHHHHHHHHhCC--CCCCCCcc
Q 008835 171 PDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGH--KTCPKTQQ 216 (551)
Q Consensus 171 ~~~~~Cpic~~~~~---~Pv~~~cgh~~~~~ci~~~~~~~~--~~CP~c~~ 216 (551)
..-|.|||..+.-. .|+.+.|||..++..+.+....|. +.||.|-.
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 34589999988775 488899999999999999998887 78999953
No 201
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.48 E-value=0.055 Score=44.12 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=52.0
Q ss_pred hCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHH
Q 008835 389 AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAIL 458 (551)
Q Consensus 389 ~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL 458 (551)
...+++++..+.+.+.+++..|+.+|+|++........-.=..++..|..++.++++.++..| ..|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 368899999999999999999999999998654332211225678888899988888876655 555444
No 202
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.47 E-value=0.0056 Score=66.82 Aligned_cols=51 Identities=18% Similarity=0.576 Sum_probs=38.6
Q ss_pred CCCCCcccccccccCc--C---Ce--eccCcccccHHHHHHHHHh-CCCCCCCCccccc
Q 008835 169 VIPDDFRCPISLELMK--D---PV--IVSTGQTYERSCIQKWLDA-GHKTCPKTQQTLL 219 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~--~---Pv--~~~cgh~~~~~ci~~~~~~-~~~~CP~c~~~l~ 219 (551)
.....-.|+||-.++. | |- ...|.|.|...|+.+|++. ++.+||.||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3445557999988765 2 21 2468899999999999996 5679999997654
No 203
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.47 E-value=0.23 Score=47.87 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh
Q 008835 447 MVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE 524 (551)
Q Consensus 447 ~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 524 (551)
....|+.+|.-++- ||..+..+.+...+..++.+|.. ..+.++..++.+|..+...++.+...+.+.+++..+..+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567888887777 89999999999999999999954 56889999999999999999999999999999999999998
Q ss_pred hC--ChHHHHHHHHHHHHH
Q 008835 525 SG--TDRAKRKAGSILELL 541 (551)
Q Consensus 525 ~~--~~~~k~~A~~lL~~l 541 (551)
+. +..+|-|..+.|...
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 76 678889999877654
No 204
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0072 Score=60.19 Aligned_cols=60 Identities=25% Similarity=0.589 Sum_probs=46.9
Q ss_pred CcccccccccCcCCe-----eccCcccccHHHHHHHHHhC-CCCCCCCcccccCCCCccchhhHHH
Q 008835 173 DFRCPISLELMKDPV-----IVSTGQTYERSCIQKWLDAG-HKTCPKTQQTLLHTALTPNYVLKSL 232 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv-----~~~cgh~~~~~ci~~~~~~~-~~~CP~c~~~l~~~~~~~n~~l~~~ 232 (551)
..+||||++-..-|+ ++.|||-|-..||++|+... ...||.|........+.+-+++|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 458999999877654 47999999999999999531 2469999887777777776666654
No 205
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.012 Score=54.61 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=33.8
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHH
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~ 205 (551)
..+.+.-+|.+|++..+|||+.+-||.|||.||-+++-
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 35666678999999999999999999999999998875
No 206
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.013 Score=58.01 Aligned_cols=52 Identities=19% Similarity=0.507 Sum_probs=36.1
Q ss_pred CCcccccccccCcCCe----eccCcccccHHHHHHHHHhC--CCCCCCCcccccCCCC
Q 008835 172 DDFRCPISLELMKDPV----IVSTGQTYERSCIQKWLDAG--HKTCPKTQQTLLHTAL 223 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv----~~~cgh~~~~~ci~~~~~~~--~~~CP~c~~~l~~~~~ 223 (551)
-.-.|.||-+..-.-- +-.|||+|.-.|+.+||... +++||.|+-.+.....
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 3457999955442111 23699999999999999853 3589999955554433
No 207
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.0088 Score=44.79 Aligned_cols=50 Identities=30% Similarity=0.551 Sum_probs=35.1
Q ss_pred CCCCcccccccccCcC-Ceec-cCcccccHHHHHHHHHh--CCCCCCCCccccc
Q 008835 170 IPDDFRCPISLELMKD-PVIV-STGQTYERSCIQKWLDA--GHKTCPKTQQTLL 219 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~-Pv~~-~cgh~~~~~ci~~~~~~--~~~~CP~c~~~l~ 219 (551)
.|-+-.||-|.-.=.| |.++ .|.|.|...||.+|+.. ....||+||+...
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3445566666544333 4333 79999999999999985 3467999998764
No 208
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.3 Score=53.79 Aligned_cols=215 Identities=19% Similarity=0.176 Sum_probs=136.9
Q ss_pred CCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHH-
Q 008835 319 STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIR- 397 (551)
Q Consensus 319 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~- 397 (551)
++-+.++-.|+..|..+.........+...+++....+.|++.++-+--+|...+..|+.. .....+|-|.+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~ 810 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEE 810 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHH
Confidence 3445577788888888887665566677889999999999998888877888877666644 22356677776
Q ss_pred HhccCC---hhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh--HHHhhhCC
Q 008835 398 LLCDGT---PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG--KTAIGQAE 472 (551)
Q Consensus 398 lL~~~~---~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~--~~~i~~~~ 472 (551)
.....+ ++.+...-.++.++....+.-..=..+-.+...+..+.+++...+..+++.+++||.-... ...+. .
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--e 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--E 888 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--H
Confidence 333221 2333344466666654332221111224455666666777777889999999999984332 22333 3
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CcHHHHHHHhhhC-ChHHHHHHHHHHHHHH
Q 008835 473 PIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIAREL---DAEEALKELSESG-TDRAKRKAGSILELLQ 542 (551)
Q Consensus 473 ~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~---g~i~~L~~ll~~~-~~~~k~~A~~lL~~l~ 542 (551)
++..++.+.+. +++-+|..|+-++..+-.+.+...-.+... .....+..+.... ++.+|-.|...|..+.
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 56666666665 568899999999988877665554444433 3445555666555 4556666666665553
No 209
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.19 E-value=1.2 Score=45.10 Aligned_cols=158 Identities=16% Similarity=0.036 Sum_probs=119.7
Q ss_pred HhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC-hHH----HHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHH
Q 008835 385 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKA----RAVRAGIVPPLMRFLKD-AGGGMVDEALAILAIL 458 (551)
Q Consensus 385 ~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~----~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL 458 (551)
.+...+.+..|+..|..-+.+.++++..+..++..... ++. ..+....-..|.-++.. .++++.-.+-.+|...
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 34556899999999999999999999999999987542 222 12222222223333322 4677888899999999
Q ss_pred hcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---cHHHHHHHhhhCChHHHHHHH
Q 008835 459 ASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELD---AEEALKELSESGTDRAKRKAG 535 (551)
Q Consensus 459 ~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~~~k~~A~ 535 (551)
+.++.....+.....+..+.++++.++-++-..|..++-.+-...+..+......+ .+.....|+.+++--+|+.+.
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 99998888888888999999999999999999999999997777777776666554 577888899999999999999
Q ss_pred HHHHHHH
Q 008835 536 SILELLQ 542 (551)
Q Consensus 536 ~lL~~l~ 542 (551)
.+|.-+-
T Consensus 231 kLL~ell 237 (335)
T PF08569_consen 231 KLLGELL 237 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 210
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.14 E-value=0.5 Score=52.72 Aligned_cols=258 Identities=19% Similarity=0.150 Sum_probs=164.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHH
Q 008835 276 ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV 355 (551)
Q Consensus 276 ~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv 355 (551)
+...+.++..++..+.++++.-.. .....+.+|.+..+..+....+++.|...+.++...-.... =......+.++
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~ 322 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLV 322 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHH
Confidence 345577788888888888864332 66677899999999999989999999999988865311111 11234678888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC--ChHHHHHHcCCh
Q 008835 356 DVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ--GNKARAVRAGIV 433 (551)
Q Consensus 356 ~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~--~~~~~l~~~g~i 433 (551)
....++++.++...+.....|+..-+. ..+...-+++...+++....+.+..++.-...++.+. +....+....++
T Consensus 323 ~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~il 400 (759)
T KOG0211|consen 323 QAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSIL 400 (759)
T ss_pred HHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhh
Confidence 888888999988888887777544322 4444466788888888877777777776666665432 345556666778
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 008835 434 PPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL 513 (551)
Q Consensus 434 ~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~ 513 (551)
+.+-.+..+.+..+....+....++.-.-. +..- -.-..|.+...++...+.++.+-...+..+-...+.........
T Consensus 401 p~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 401 PEVQVLVLDNALHVRSALASVITGLSPILP-KERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred HHHHHHHhcccchHHHHHhccccccCccCC-cCcC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence 888888888777777766666655544211 1000 11345666666666667777776655544332222222333444
Q ss_pred CcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 514 DAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 514 g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
..++.+.++......|++.+..+-+..+
T Consensus 479 slLp~i~el~~d~~wRvr~ail~~ip~l 506 (759)
T KOG0211|consen 479 SLLPAIVELAEDLLWRVRLAILEYIPQL 506 (759)
T ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 4556666665555555555555544443
No 211
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.12 E-value=0.72 Score=48.42 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=114.9
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCCh----hHHHHHHHHHHHhccCCChHH
Q 008835 350 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP----RGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~----~~~~~a~~aL~nL~~~~~~~~ 425 (551)
....+++++.+|+...+..|...|..+|.+......+....++..|..++.+++. ......+.++..+-...-.-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567889999999888888999999999998888888888899999999988754 445566666666644332222
Q ss_pred HHHHcCChHHHHHhhc--cCChhhHHHHHHHHHHHhcChh-hHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 008835 426 RAVRAGIVPPLMRFLK--DAGGGMVDEALAILAILASHQE-GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 502 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~--~~~~~~~~~al~~L~nL~~~~~-~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~ 502 (551)
..+...+|.....+.. ..+..+...|+.+|.++..... -++.+.++--+..|+..|+.++.+++..|.+.|-.+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 2333334444444442 2456777899999999888654 677777888899999999999988888898888777653
Q ss_pred C
Q 008835 503 D 503 (551)
Q Consensus 503 ~ 503 (551)
-
T Consensus 244 a 244 (713)
T KOG2999|consen 244 A 244 (713)
T ss_pred C
Confidence 3
No 212
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.08 E-value=0.012 Score=41.61 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=37.1
Q ss_pred CCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 172 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
.+..|-.|...-...++++|||..|+.|..-+ ..+-||.|+.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 34567778888788899999999999996543 456799999988654
No 213
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.026 Score=55.08 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=40.4
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.++-.||||---....|+.||||.-|..||.+++- +.+.|-.|+....
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 37789999998888889999999999999999987 4667888875443
No 214
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.98 E-value=2.1 Score=45.32 Aligned_cols=266 Identities=14% Similarity=0.111 Sum_probs=161.9
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHHHHhcCC-HHHHH-HhhcC-CCHHHHHHHHHHHHh-ccc---
Q 008835 266 AAIDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGA-IPLLV-ELLSS-TDPRTQEHAVTALLN-LSI--- 337 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~-i~~Lv-~lL~~-~~~~~~~~a~~~L~n-Ls~--- 337 (551)
+....+++..-... ...++.++..+.+++.. ..-...+...+. +-.++ --++. .+..+|..|+.+|.+ +-.
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444333 44678899999998853 323344444442 22222 23333 467788899999887 321
Q ss_pred ---CCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHH
Q 008835 338 ---NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA 413 (551)
Q Consensus 338 ---~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~a 413 (551)
++.+|.. ++...++.-+..+.+++..|..+|..+-... ..-..+.+.-........+++.+.++...|...
T Consensus 212 nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEf 286 (858)
T COG5215 212 NFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEF 286 (858)
T ss_pred hhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 2222322 2344555556678889988888887764322 222333444445555667788888888887766
Q ss_pred HHHhccCCC---------------h--HHHHHHcCChHHHHHhhccC-------ChhhHHHHHHHHHHHhcChhhHHHhh
Q 008835 414 IFNLSIYQG---------------N--KARAVRAGIVPPLMRFLKDA-------GGGMVDEALAILAILASHQEGKTAIG 469 (551)
Q Consensus 414 L~nL~~~~~---------------~--~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~al~~L~nL~~~~~~~~~i~ 469 (551)
-..+|...- | -.+..-.+++|.|+++|... +......|..+|...+....
T Consensus 287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g------ 360 (858)
T COG5215 287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG------ 360 (858)
T ss_pred HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh------
Confidence 655553221 1 11122345899999999651 22334445555544443211
Q ss_pred hCCCHHHHHHH----HhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 470 QAEPIPVLMEV----IRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 470 ~~~~v~~L~~l----L~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
...+.+++.+ +++.+...++.|+-++..+..+..+.+..-.-..+++.+..++.+..--+|..++|++..+.++
T Consensus 361 -d~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 361 -DKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred -hHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 1233334444 4567788899999999999988766665555566889999988888888999999998888654
No 215
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.97 E-value=0.011 Score=58.57 Aligned_cols=47 Identities=32% Similarity=0.505 Sum_probs=40.2
Q ss_pred ccccccccCcCCeeccCcccccHHHHHHHHHh-CCCCCCCCcccccCC
Q 008835 175 RCPISLELMKDPVIVSTGQTYERSCIQKWLDA-GHKTCPKTQQTLLHT 221 (551)
Q Consensus 175 ~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~-~~~~CP~c~~~l~~~ 221 (551)
.|-||-+-=+|=-+=||||-.|-.|+..|..+ +..+||.||-.+.-+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 59999998888777899999999999999975 367899999877644
No 216
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.90 E-value=0.12 Score=46.28 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=99.7
Q ss_pred CCcHHHHHHHhc--CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH-
Q 008835 349 GAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA- 425 (551)
Q Consensus 349 g~i~~Lv~~L~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~- 425 (551)
..++.++..|.. .+++++..+.-++..+- +..+... ...+-..+-.++..++.+....+..++..|-.......
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345666666664 46778888888887772 2222222 22233334444555555677788888888887665444
Q ss_pred HHH-HcCChHHHHHhhc--cCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc-CCHH-HHHHHHHHHHH
Q 008835 426 RAV-RAGIVPPLMRFLK--DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPR-NRENAAAVLWA 498 (551)
Q Consensus 426 ~l~-~~g~i~~Lv~lL~--~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~-~~~~-~k~~A~~~L~~ 498 (551)
.+. ..|+++.+++++. ..+..++..++.+|..=|.+...|..+.+ .+++.|-++++. .++. +|..|+-+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 333 6899999999998 67888888899999888888888877776 489999999964 4455 78777766653
No 217
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.83 E-value=1.5 Score=40.20 Aligned_cols=111 Identities=24% Similarity=0.232 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCC-cHHHHHH
Q 008835 279 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGA-IPDIVDV 357 (551)
Q Consensus 279 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~-i~~Lv~~ 357 (551)
++.++..++..+..|+...+..- ...+|.+...|+++++.+|..|+.+|..|...+--| -.|- +..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 46788899999999987554322 235789999999999999999999999987543211 1233 4788888
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc
Q 008835 358 LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD 401 (551)
Q Consensus 358 L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~ 401 (551)
+.+.+++++..|..++..++... +...+ ...++.++..|.+
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~-~~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKR-NPNII--YNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-cchHH--HHHHHHHHHHHhC
Confidence 99999999999999999887652 11111 2345555555544
No 218
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.82 E-value=0.0067 Score=64.96 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=40.4
Q ss_pred CCcccccccccCcCCee---ccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 172 DDFRCPISLELMKDPVI---VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~---~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
..-.||+|..-+.|-.+ .+|+|.||..||..|..- ..+||.|+..|...
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhee
Confidence 34579999998887765 489999999999999984 67899999887643
No 219
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.77 E-value=0.46 Score=47.50 Aligned_cols=187 Identities=14% Similarity=0.170 Sum_probs=120.1
Q ss_pred CCHHHHH-HhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch--hH
Q 008835 308 GAIPLLV-ELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN--KV 384 (551)
Q Consensus 308 g~i~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~--~~ 384 (551)
+.+..|+ .-++++++.+|+.|+.+|+-.+.-+.. + ....++.+...+..++.+++..|+.+++.+....+. -.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---L-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444444 677889999999999999988764431 1 123477788888888999999999999988644321 11
Q ss_pred -------HhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc----CChhhHHHHHH
Q 008835 385 -------AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD----AGGGMVDEALA 453 (551)
Q Consensus 385 -------~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~al~ 453 (551)
.......+..+.+.+.+.+++++..|+..++.|...+.... ...++..|+-+..+ .+..++..--.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 12234678888889998899999999999999876543332 13344455544444 23344444444
Q ss_pred HHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCH----HH---HHHHHHHHHHHhc
Q 008835 454 ILAILASHQEGKTAIGQAEPIPVLMEVIRTGSP----RN---RENAAAVLWAICT 501 (551)
Q Consensus 454 ~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~----~~---k~~A~~~L~~L~~ 501 (551)
.+-..+......+..+...+++.+-.+...... .. -...+..+..++.
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 555666654444455555677777777764321 11 2345556666665
No 220
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.019 Score=56.79 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=40.3
Q ss_pred CCCCCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 164 KHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 164 ~~~~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.......|....|-||.+-..+.+.+||||+.| |+.-.. ....||.||+.+.
T Consensus 296 ~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 296 NGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred cCcccccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 344556677778999999999999999999987 655433 3566999998764
No 221
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.75 E-value=0.021 Score=39.43 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=21.8
Q ss_pred cccccccCc--CCeec--cCcccccHHHHHHHHHhCCCCCCCCcccc
Q 008835 176 CPISLELMK--DPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTL 218 (551)
Q Consensus 176 Cpic~~~~~--~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l 218 (551)
||+|.+.|. +--+. +||+.+|+.|..+-...++..||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988872 21222 68999999998887765678899999764
No 222
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.56 E-value=0.68 Score=52.92 Aligned_cols=226 Identities=18% Similarity=0.182 Sum_probs=139.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh---hChhhHHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHhccc----
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAK---RNADNRVCIAEAGAIPLLVELLSSTD-PRTQEHAVTALLNLSI---- 337 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~---~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~---- 337 (551)
-.+|.++.++..+..++|..|+..|..+.. .-+..-..+.-.=.+|.|-.++.+.+ ..++..-+..|..||.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 367788888888889999999988876542 22222233444446677777777733 2233222233333221
Q ss_pred --------------C-CCchHHHh----------hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh---
Q 008835 338 --------------N-DSNKGTIV----------NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--- 389 (551)
Q Consensus 338 --------------~-~~~~~~i~----------~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--- 389 (551)
+ +++..... ..++=..+..+|.+..+-++..-+..|.-|+. .+++.
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksN 615 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV------FFGKEKSN 615 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH------Hhhhcccc
Confidence 1 11100000 11222233444445555666655555555542 22222
Q ss_pred -CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH-H
Q 008835 390 -GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT-A 467 (551)
Q Consensus 390 -~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~-~ 467 (551)
-.++.|+..|++.+...+-.-...|..++..-+- +-++.+.+|.|.+-|.+.++.++..|+++|..|+...--++ .
T Consensus 616 D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~ 693 (1431)
T KOG1240|consen 616 DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA 693 (1431)
T ss_pred cchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH
Confidence 3677888889888777666555555555543222 23567789999999999999999999999999998654333 3
Q ss_pred hhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 468 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 468 i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
+. ..+.....+|-.++..+|..++.+|.....
T Consensus 694 v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 694 VK--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HH--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 33 356666777888999999999999988764
No 223
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.55 E-value=0.24 Score=45.62 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=62.5
Q ss_pred HHHHcCChHHHHHhhcc---------CChhhHHHHHHHHHHHhcChhhHHHhhhC-CCHHHHHHHHhcCCHHHHHHHHHH
Q 008835 426 RAVRAGIVPPLMRFLKD---------AGGGMVDEALAILAILASHQEGKTAIGQA-EPIPVLMEVIRTGSPRNRENAAAV 495 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~---------~~~~~~~~al~~L~nL~~~~~~~~~i~~~-~~v~~L~~lL~~~~~~~k~~A~~~ 495 (551)
.+++.||+..|+.+|.. .+......++.+|..|..+..|...++.. +++..++..|.+.+..++..|+.+
T Consensus 102 ~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~lei 181 (187)
T PF06371_consen 102 EFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEI 181 (187)
T ss_dssp HH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 58889999999998865 22356778999999999999999888874 789999999999999999999999
Q ss_pred HHHHh
Q 008835 496 LWAIC 500 (551)
Q Consensus 496 L~~L~ 500 (551)
|..+|
T Consensus 182 L~~lc 186 (187)
T PF06371_consen 182 LAALC 186 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
No 224
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.51 E-value=3.7 Score=43.57 Aligned_cols=269 Identities=9% Similarity=0.005 Sum_probs=142.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcC
Q 008835 270 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAG 349 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g 349 (551)
+.-+-+.+.++.-+..|+-.+.....+..+....-.-..++|.+..+..++..-++..++|+++.++.+- ...|-..|
T Consensus 370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~ 447 (858)
T COG5215 370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCG 447 (858)
T ss_pred HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccc
Confidence 3334556788989999999999887543333222233567899999998888889999999999997431 11222456
Q ss_pred CcHHHHHHHhcC---CHHHHHHHHHHHHHhcCCcchh----HHhhhhCcHHHHHHHhcc------CChhHHHHHHHHHHH
Q 008835 350 AIPDIVDVLKNG---SMEARENAAATLFSLSVIDENK----VAIGAAGAIPALIRLLCD------GTPRGKKDAATAIFN 416 (551)
Q Consensus 350 ~i~~Lv~~L~~~---~~~~~~~aa~~L~~Ls~~~~~~----~~i~~~~~i~~Lv~lL~~------~~~~~~~~a~~aL~n 416 (551)
-++..+..+.-| .+....++.|...||...-... .... ....+.++.-|-. .+...+..+..+|..
T Consensus 448 Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgt 526 (858)
T COG5215 448 HLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVSLFSALGT 526 (858)
T ss_pred cccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 666666655444 5677788999999886432111 1111 1333444433221 223455555566665
Q ss_pred hccCCCh-HHHH-------HH---cCChHHHHHhhccCC----hhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHH
Q 008835 417 LSIYQGN-KARA-------VR---AGIVPPLMRFLKDAG----GGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEV 480 (551)
Q Consensus 417 L~~~~~~-~~~l-------~~---~g~i~~Lv~lL~~~~----~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~l 480 (551)
|...... ...+ +. ...+..+-+.+...+ .+++.+-+++|..+... +.....+ +.-....++++
T Consensus 527 li~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~ 605 (858)
T COG5215 527 LILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRI 605 (858)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHH
Confidence 5443222 1111 10 122333333332222 33444555555544432 1111111 11245667778
Q ss_pred HhcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 481 IRTGS-PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 481 L~~~~-~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
|++.. ..+-.....++.+|...-+ ..-+..-..++|-|..-+...+..+-.-|..++.-|.+
T Consensus 606 les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlan 668 (858)
T COG5215 606 LESTKPTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLAN 668 (858)
T ss_pred HhccCCchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 87764 3344455556666654221 12222223466666666644455555666666555543
No 225
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.45 E-value=2.7 Score=43.57 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=100.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcc----hhHHhhhhCcHHHHHHHhccCC------h-hHHHHHHHHHHHhccCCC
Q 008835 354 IVDVLKNGSMEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDGT------P-RGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 354 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~----~~~~i~~~~~i~~Lv~lL~~~~------~-~~~~~a~~aL~nL~~~~~ 422 (551)
+..+++..+.+-+-.|+-.+..+...++ ++..+.+.-+++.+=++|.+++ + -.+.-++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4444444455555556666666765543 6777888877788888887642 2 235567788888998887
Q ss_pred h--HHHHHHcCChHHHHHhhcc-CChh------hHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC-HHHHHHH
Q 008835 423 N--KARAVRAGIVPPLMRFLKD-AGGG------MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENA 492 (551)
Q Consensus 423 ~--~~~l~~~g~i~~Lv~lL~~-~~~~------~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~-~~~k~~A 492 (551)
- ...+++ .||.|.++++. .+++ +.+.+-.+|..+++++.|...++..|+++.+.++-...+ ..-..-|
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4 345664 58999999975 3444 889999999999999999999999999999997665433 2234445
Q ss_pred HHHHHHHh
Q 008835 493 AAVLWAIC 500 (551)
Q Consensus 493 ~~~L~~L~ 500 (551)
..++.-+.
T Consensus 174 l~Vlll~~ 181 (698)
T KOG2611|consen 174 LKVLLLLV 181 (698)
T ss_pred HHHHHHHH
Confidence 55544443
No 226
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.026 Score=55.77 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=39.5
Q ss_pred CCcccccccccCcCCeeccCccc-ccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 172 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
..-.|-||+.-.+|-+++||-|. .|..|-.... -.++.||.||+++..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 35689999999999999999995 7999977654 346779999998753
No 227
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=94.24 E-value=0.077 Score=49.94 Aligned_cols=120 Identities=25% Similarity=0.260 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcccC---CCchHHHhhcCCcHHHHHHHhcCC---------------HHHHHHHHHHHHHhcCCcchhH
Q 008835 323 RTQEHAVTALLNLSIN---DSNKGTIVNAGAIPDIVDVLKNGS---------------MEARENAAATLFSLSVIDENKV 384 (551)
Q Consensus 323 ~~~~~a~~~L~nLs~~---~~~~~~i~~~g~i~~Lv~~L~~~~---------------~~~~~~aa~~L~~Ls~~~~~~~ 384 (551)
.+|++|+-+|.|++.. ...-+.|.- -+++.|+...-..+ -.-+..|+.+|..|+..+.|..
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~~-PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIAR-PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHHH-HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 4678888888888753 222223321 13344444432221 2348899999999999999988
Q ss_pred HhhhhC-------cHHHHHHHhcc-CChhHHHHHHHHHHHhccCCChHHHH--HHcCChHHHHHhhccC
Q 008835 385 AIGAAG-------AIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARA--VRAGIVPPLMRFLKDA 443 (551)
Q Consensus 385 ~i~~~~-------~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l--~~~g~i~~Lv~lL~~~ 443 (551)
.+...+ .+..|+++|.. +++-.++.|+..|.||+..++...+. .+.++|..|+.++.+.
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 887764 45555666654 56778999999999999988766653 3679999999999653
No 228
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.02 E-value=0.043 Score=51.76 Aligned_cols=45 Identities=31% Similarity=0.396 Sum_probs=37.0
Q ss_pred CCcccccccccCcCCee-ccCcccccHHHHHHHHHh-CCCCCCCCcc
Q 008835 172 DDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDA-GHKTCPKTQQ 216 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~-~~~~CP~c~~ 216 (551)
-+++||++......|++ ..|||.|.|..|...... ....||+-+-
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 45799999999999997 689999999999998863 2356998443
No 229
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.97 E-value=1.7 Score=39.78 Aligned_cols=92 Identities=27% Similarity=0.357 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCc-HHHHHHHh
Q 008835 321 DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGA-IPALIRLL 399 (551)
Q Consensus 321 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~-i~~Lv~lL 399 (551)
++.+|.+++.+++-|+..-++ ++ ...++.+...|+++++.+|..|+.+|..|...+..+. .|. +..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 578899999999998864322 11 2357889999999999999999999999976543221 233 37788888
Q ss_pred ccCChhHHHHHHHHHHHhccC
Q 008835 400 CDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 400 ~~~~~~~~~~a~~aL~nL~~~ 420 (551)
.+.+++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999998876
No 230
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.96 E-value=3.8 Score=39.40 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC---
Q 008835 264 DRAAIDALLGKLAN--GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN--- 338 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s--~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--- 338 (551)
+..+++.|+..|.. ..+-++.+|..+|..+.. .+.++.|-++.+++-..+++....++..+-.-
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 44689999999974 446688899998887752 24567777777667677777666566554211
Q ss_pred -C-CchHHH--h------hcCCcHHHHHHHhcCC-HHH-HHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhH
Q 008835 339 -D-SNKGTI--V------NAGAIPDIVDVLKNGS-MEA-RENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRG 406 (551)
Q Consensus 339 -~-~~~~~i--~------~~g~i~~Lv~~L~~~~-~~~-~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~ 406 (551)
. .+.... + ..+-+..+-..|.+.+ +-. +..|.-.|.|+ +...+|..|++-+..++.-.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALF 203 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHH
Confidence 0 000000 1 1122444444444433 222 22233333332 22346778888888888888
Q ss_pred HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC
Q 008835 407 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG 484 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~ 484 (551)
+..++..+..|-+ .-.|+.|.+.|.+ .++-++..|+.+|..++.. .++..|.+++...
T Consensus 204 rhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 204 RHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCc
Confidence 8888888876633 3468888888876 5667788899998877754 5788899999888
Q ss_pred CHHHHHHHHHHHHHHh
Q 008835 485 SPRNRENAAAVLWAIC 500 (551)
Q Consensus 485 ~~~~k~~A~~~L~~L~ 500 (551)
.+-+++.+..+|-.+-
T Consensus 264 ~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877775543
No 231
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=2 Score=49.33 Aligned_cols=220 Identities=16% Similarity=0.204 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-C-CchHHHhhcCCcH
Q 008835 277 NGNVEEQRAAAGELRLLAKRNADNRVCIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLSIN-D-SNKGTIVNAGAIP 352 (551)
Q Consensus 277 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~-~~~~~i~~~g~i~ 352 (551)
+.+..+|.++-+.|..++.. +.......+. .....|..-+++.....+..++.+|..|-.. + +....+ ...|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 44778899999999998864 3232222211 2233444445555667777777777766542 2 122222 22344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcC----CcchhHHhhhhCcHHHHHHHhccC--ChhHHHHH--HHHHHHhccCCChH
Q 008835 353 DIVDVLKNGSMEARENAAATLFSLSV----IDENKVAIGAAGAIPALIRLLCDG--TPRGKKDA--ATAIFNLSIYQGNK 424 (551)
Q Consensus 353 ~Lv~~L~~~~~~~~~~aa~~L~~Ls~----~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a--~~aL~nL~~~~~~~ 424 (551)
.++=.++..+...+.+|-.+|..+.. .+..... ....|..++..+..+ .......+ +.++..+.....+.
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444466788899999999988862 1111111 112455555555543 22222222 44444443322111
Q ss_pred -HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 425 -ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 425 -~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
....-.+++..+..+|.+.+++++..|++.+..++.. |+..-.--....++.++.++++....++..+-.+|-.|+.
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1112234455566677779999999999999988874 5433332233478888998888888888888777777775
No 232
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.87 E-value=0.7 Score=52.82 Aligned_cols=230 Identities=16% Similarity=0.102 Sum_probs=134.4
Q ss_pred CHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC----cchh
Q 008835 309 AIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI----DENK 383 (551)
Q Consensus 309 ~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~----~~~~ 383 (551)
+++.+...+++ .....+..|+..|..+|..-..-.. -..++|-++.++.++...+|..|+.+|..+-.. ...-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 46666666665 4677889999999999864322112 245789999999999999999999988776432 1222
Q ss_pred HHhhhhCcHHHHHHHhccCC-hhHHHHHHHHHHHhccC-------------------CCh--H--------HHHHHcCCh
Q 008835 384 VAIGAAGAIPALIRLLCDGT-PRGKKDAATAIFNLSIY-------------------QGN--K--------ARAVRAGIV 433 (551)
Q Consensus 384 ~~i~~~~~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~-------------------~~~--~--------~~l~~~g~i 433 (551)
..|.-.=.+|.|-.++.+.+ ..++..-+..|.-|+.. +++ . ...+-.++-
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 33333456677777777633 23333323333333211 111 0 011122333
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 008835 434 PPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL 513 (551)
Q Consensus 434 ~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~ 513 (551)
+..+.++.++++-++..-+..|.-||..=. +.. .+.=.++.|..+|.+.+...|-.-..-|.-+|..-+ ..-+++
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG-k~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~se 655 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFG-KEK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSE 655 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhh-hcc-cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHH
Confidence 445556666666666666666666665210 000 011246788888887777777654444444432110 011345
Q ss_pred CcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 514 DAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 514 g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
+++|.|.+-+.++.+-+..+|...|..|.+..
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 67777777788888888888888888876543
No 233
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.85 E-value=1.2 Score=46.82 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=114.9
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCCh----hhHHHHHHHHHHHhcChhhH
Q 008835 390 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG----GMVDEALAILAILASHQEGK 465 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~----~~~~~al~~L~nL~~~~~~~ 465 (551)
.....+.+++.+++...+..|+.-|..++.+......+++..++..|..++.+++. .+...++.++..+-.+.-..
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 45677888899999888888999999999998888899999999999999987543 44455555555554443211
Q ss_pred HHhhhCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 466 TAIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 466 ~~i~~~~~v~~L~~lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
=......+|.....+..- -...+-..|..+|-++..+++...+.+.++--++.|+..++.++.++..+|..++.-+-
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 111223455555555532 23456678999999999988888888889989999999999999999999998887763
No 234
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.78 E-value=1.9 Score=40.21 Aligned_cols=147 Identities=12% Similarity=0.058 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHH---hcCC--HHHHHHHHHHHHHhcCCcc--hhHHhhhhCcHHHHH
Q 008835 324 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL---KNGS--MEARENAAATLFSLSVIDE--NKVAIGAAGAIPALI 396 (551)
Q Consensus 324 ~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L---~~~~--~~~~~~aa~~L~~Ls~~~~--~~~~i~~~~~i~~Lv 396 (551)
-..+|+..|--++.+++.|..+.++.+---+-.+| .+.+ +.+|..++.++..|..+++ ....+....++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 34566767777788899888887765433333334 3332 4578889999999987764 344555669999999
Q ss_pred HHhccCChhHHHHHHHHHHHhccCCChHHHHHH--------cCChHHHHHhh-ccCChhhHHHHHHHHHHHhcChhhHHH
Q 008835 397 RLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR--------AGIVPPLMRFL-KDAGGGMVDEALAILAILASHQEGKTA 467 (551)
Q Consensus 397 ~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~--------~g~i~~Lv~lL-~~~~~~~~~~al~~L~nL~~~~~~~~~ 467 (551)
+++..+++-.+.-|+-++..+..++.+-..+.. ..++..++.-+ +.+...+...++.+-..||..+..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 999999988888888888877776655433221 22333344333 336778889999999999999998877
Q ss_pred hhh
Q 008835 468 IGQ 470 (551)
Q Consensus 468 i~~ 470 (551)
+..
T Consensus 276 L~~ 278 (315)
T COG5209 276 LSS 278 (315)
T ss_pred Hhc
Confidence 653
No 235
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.70 E-value=4.8 Score=41.84 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=136.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCh---hhHHHHHhcCCHHHHHHhhcCC-------CHHHHHHHHHHHHhcccCCC
Q 008835 271 LLGKLANGNVEEQRAAAGELRLLAKRNA---DNRVCIAEAGAIPLLVELLSST-------DPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 271 Lv~~L~s~~~~~~~~a~~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~ 340 (551)
+..++...+.+.|..|+--...+++..+ .+|..+.++-+.+.+-++|.++ +...+..++.+|.-.+.+++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5555666667788888888888887543 4678899998899999999763 33456667777777776654
Q ss_pred c--hHHHhhcCCcHHHHHHHhcC-CHH------HHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhH-HHHH
Q 008835 341 N--KGTIVNAGAIPDIVDVLKNG-SME------ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRG-KKDA 410 (551)
Q Consensus 341 ~--~~~i~~~g~i~~Lv~~L~~~-~~~------~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~-~~~a 410 (551)
. ...|+ +.||.|.+++..+ +++ +.+.+-.+|..++..+.....+...|+++.+.++-.-.+... ...|
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4 33443 4589999999765 232 567788899999999888889999999999997643322111 2222
Q ss_pred HHHHHHhc----cCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChh-------hHHHhhhCCCHHHHHH
Q 008835 411 ATAIFNLS----IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE-------GKTAIGQAEPIPVLME 479 (551)
Q Consensus 411 ~~aL~nL~----~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~-------~~~~i~~~~~v~~L~~ 479 (551)
+..+.-+. ..++.-..+... |..+..-+...+...+...+.+|..+-..+. -+..+........++.
T Consensus 174 l~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~ 251 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVA 251 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHH
Confidence 33222221 222222222221 4444444444456667777888875433221 1222222233455566
Q ss_pred HHhcC-CHHHHHHHHHHHHHH
Q 008835 480 VIRTG-SPRNRENAAAVLWAI 499 (551)
Q Consensus 480 lL~~~-~~~~k~~A~~~L~~L 499 (551)
+|++. .|.-|..|.....++
T Consensus 252 IL~~kv~p~qr~pAL~Laa~~ 272 (698)
T KOG2611|consen 252 ILQNKVAPSQRLPALILAANM 272 (698)
T ss_pred HHhcccCchhcChHHHHHHHH
Confidence 66653 244454554444443
No 236
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.63 E-value=0.017 Score=63.49 Aligned_cols=48 Identities=19% Similarity=0.459 Sum_probs=40.1
Q ss_pred cccccccccCcCCeeccCcccccHHHHHHHHHhCC-CCCCCCcccccCCC
Q 008835 174 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGH-KTCPKTQQTLLHTA 222 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~-~~CP~c~~~l~~~~ 222 (551)
+.|++|.+ ..+|+++.|||.||..|+.+.+.... ..||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 88899999999999999999887533 35999987665443
No 237
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.55 E-value=1.3 Score=49.32 Aligned_cols=216 Identities=13% Similarity=0.101 Sum_probs=139.2
Q ss_pred CCHHHHHHHHHHHHhcccCC-CchHHHhhcCCcHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchhHHhhh--hCcHHHH
Q 008835 320 TDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGA--AGAIPAL 395 (551)
Q Consensus 320 ~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~~~i~~L 395 (551)
..|.+...+.+++...+... .+.. +. .-++...+..+. +..+.++..|+++++..+.. ..+.. .+++..|
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQ-LL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDGL 535 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchh-HH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHHHH
Confidence 45555556666666444321 1111 10 112233333333 23456777777777766522 11211 2778888
Q ss_pred HHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhcChhhHHHhhhCCC
Q 008835 396 IRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEP 473 (551)
Q Consensus 396 v~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~ 473 (551)
+++....+.++....+.+|+-.+..+.......++.+.|....++.. .++.+...+-.++..|+....+..-+. ...
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHH
Confidence 88888888888888999999999988888888888888888887753 677777778888888877443333222 247
Q ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh-hhCChHHHHHHHHHHHHHH
Q 008835 474 IPVLMEVIRTGS----PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELS-ESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 474 v~~L~~lL~~~~----~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~k~~A~~lL~~l~ 542 (551)
+|.++..|.... +....-|+.+|..+.++.+.-.....-.-+++++.+.. .+++...-..|.++|+-+-
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 999999998654 45566677788777776644333333333677777764 5566677778888888764
No 238
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.40 E-value=6.4 Score=41.89 Aligned_cols=110 Identities=18% Similarity=0.132 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCC-HH---HHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCC
Q 008835 265 RAAIDALLGKLANGN-VE---EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~-~~---~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 340 (551)
..+.-.+++.+.+.. .. .-...++.+..+.+++++.+..+. |.|-.-|++.-..++..+++++..++...-
T Consensus 222 kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 222 KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENV 296 (898)
T ss_pred HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhcc
Confidence 355666777776443 11 122234555566677777666654 777777777778888889998888875331
Q ss_pred chHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc
Q 008835 341 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE 381 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~ 381 (551)
. ...+ ..++..|-.+|++.....+-.|.++|..|+....
T Consensus 297 ~-~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 297 G-SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred C-HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 1 1111 1245566666777778888999999999986543
No 239
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.37 E-value=0.42 Score=45.14 Aligned_cols=87 Identities=21% Similarity=0.189 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhcChhhHHHhhhCCC-------HHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHH-HHHHHcCcHH
Q 008835 447 MVDEALAILAILASHQEGKTAIGQAEP-------IPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQL-KIARELDAEE 517 (551)
Q Consensus 447 ~~~~al~~L~nL~~~~~~~~~i~~~~~-------v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~-~~~~~~g~i~ 517 (551)
-+..|+.+|..|+-.+.+.+.+..++- +..|+++|.. +++-.||.|+.+|.+||..+...+ ....+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 368899999999999988888877654 3444555543 568899999999999999997766 4557789999
Q ss_pred HHHHHhhhCChHHHHH
Q 008835 518 ALKELSESGTDRAKRK 533 (551)
Q Consensus 518 ~L~~ll~~~~~~~k~~ 533 (551)
.|+.++......+...
T Consensus 220 ~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998876554433
No 240
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.20 E-value=0.13 Score=32.13 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 008835 310 IPLLVELLSSTDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 310 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 337 (551)
+|.++++++++++++|..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998864
No 241
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.14 E-value=0.099 Score=36.79 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=23.3
Q ss_pred CcccccccccCcCCee-ccCccc--ccHHHHHHH-HHhCCCCCCCCccc
Q 008835 173 DFRCPISLELMKDPVI-VSTGQT--YERSCIQKW-LDAGHKTCPKTQQT 217 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~-~~cgh~--~~~~ci~~~-~~~~~~~CP~c~~~ 217 (551)
.+.||++...|.-|+- ..|.|. |+...+-.. ...+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3689999999999996 689996 444333222 22456789999864
No 242
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.02 Score=54.49 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCcccccccccCcCCeeccCccc-ccHHHHHHHHHhCCCCCCCCcccc
Q 008835 172 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTL 218 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l 218 (551)
.+..|.||++..+|.|.++|||. -|-.|=. .-..||.||+.+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHH
Confidence 37899999999999999999994 4555511 124799999865
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.11 E-value=0.51 Score=47.10 Aligned_cols=44 Identities=18% Similarity=0.539 Sum_probs=35.7
Q ss_pred CCcccccccccCc-CCe---eccCcccccHHHHHHHHHh-CCCCCCCCc
Q 008835 172 DDFRCPISLELMK-DPV---IVSTGQTYERSCIQKWLDA-GHKTCPKTQ 215 (551)
Q Consensus 172 ~~~~Cpic~~~~~-~Pv---~~~cgh~~~~~ci~~~~~~-~~~~CP~c~ 215 (551)
-++.|-.|++.+- .|- .+||.|.|.-.|.+.++.. +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4678999998763 222 3799999999999999874 568999998
No 244
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=2.7 Score=46.66 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
+.......+..+.++.+.++-.|+..|+.+.+.. .....+...+++...+.+|.+.|+-+--+|+..+..|+.
T Consensus 725 ~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------ 797 (982)
T KOG4653|consen 725 DIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------ 797 (982)
T ss_pred cHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------
Confidence 3455777777888888889999999999999744 666777788999999999999999888888887776663
Q ss_pred HHhhcCCcHHHHHH-HhcC---CHHHHHHHHHHHHHhcCCc-c-hhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 344 TIVNAGAIPDIVDV-LKNG---SMEARENAAATLFSLSVID-E-NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~-L~~~---~~~~~~~aa~~L~~Ls~~~-~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
+.....+|.+.+. .... .++.+-....++.++...- + ..... ...+..++..+++++...+..++.++++|
T Consensus 798 -vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 798 -VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred -hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 2344556666663 2211 1222222223333332110 0 00000 12344555556666666788888888888
Q ss_pred ccCCChHHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhc
Q 008835 418 SIYQGNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILAS 460 (551)
Q Consensus 418 ~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~al~~L~nL~~ 460 (551)
|.-...+..=.=..++..++.+.+ +++.-++..|+.++..+-.
T Consensus 875 cq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 763322211111223444444443 3455566667766665544
No 245
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.96 E-value=3.3 Score=41.37 Aligned_cols=169 Identities=14% Similarity=0.159 Sum_probs=110.2
Q ss_pred HHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhccc-CC-Cch
Q 008835 266 AAIDALL-GKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-ND-SNK 342 (551)
Q Consensus 266 ~~i~~Lv-~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~-~~~ 342 (551)
+.+..|+ ..+.+.++.++..|+.+|+..+--+.+... ..++.+...+..++..++..|+.++..+.. +. ..-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3444444 677888999999999999998864442211 236778888877899999999999998754 11 111
Q ss_pred -------HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc----CChhHHHHHH
Q 008835 343 -------GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD----GTPRGKKDAA 411 (551)
Q Consensus 343 -------~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~----~~~~~~~~a~ 411 (551)
........++.+.+.|.+.+++++..|+..+..|-..+.... ...++..|+-+--+ ++.+.+..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 112234577788888999999999999999998765543222 12344444443322 2344444444
Q ss_pred HHHHHhccCCChHHHHHHcCChHHHHHhhcc
Q 008835 412 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKD 442 (551)
Q Consensus 412 ~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~ 442 (551)
..+-..+..+......+...+++.+-.+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666666655666667777777776654
No 246
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.1 Score=52.26 Aligned_cols=63 Identities=25% Similarity=0.381 Sum_probs=49.1
Q ss_pred cccccccccCc------CCeeccCcccccHHHHHHHHHhCCCCCCCCcccc--cC---CCCccchhhHHHHHHH
Q 008835 174 FRCPISLELMK------DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTL--LH---TALTPNYVLKSLIALW 236 (551)
Q Consensus 174 ~~Cpic~~~~~------~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l--~~---~~~~~n~~l~~~i~~~ 236 (551)
+.|-||.+-+. -|.++.|||++|..|+.+.+..+...||.||.+. .. ..+..|+++...++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 45888877654 4778899999999999998887778899999884 22 2367788888777765
No 247
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.93 E-value=0.25 Score=41.62 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=58.8
Q ss_pred CCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 472 EPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 472 ~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
..+..|+.+|.. .++.+..-|+.=|..++...|..+..+.+.|+-..++.++.+.+++++..|..+++.+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 368899999954 45677778888899999988888888888999999999999999999999999988764
No 248
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.90 E-value=7.7 Score=37.23 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=110.4
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHhcccCC-CchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh
Q 008835 310 IPLLVE-LLSSTDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 387 (551)
Q Consensus 310 i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (551)
+|.|+. +-+..+++.+...+.+|..++.++ .+... ++..|..+...+..+.+.-+...+..+-..++ +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 455555 445568999999999999999876 33222 34556666666666665555555555533221 110
Q ss_pred hhCcHHHHHHHh--------ccC--ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhh-ccCChhhHHHHHHHHH
Q 008835 388 AAGAIPALIRLL--------CDG--TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFL-KDAGGGMVDEALAILA 456 (551)
Q Consensus 388 ~~~~i~~Lv~lL--------~~~--~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~~~~~al~~L~ 456 (551)
+.+..++..+ .++ ..+.....+.++..+|...+++ ....++.+..+| .+.++.++..++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3344333330 111 2344455566788888766662 233578888888 6778888899999999
Q ss_pred HHhcChhhHHHhhhC-CCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhhCC
Q 008835 457 ILASHQEGKTAIGQA-EPIPVLMEVIRTGS-PRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGT 527 (551)
Q Consensus 457 nL~~~~~~~~~i~~~-~~v~~L~~lL~~~~-~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~ 527 (551)
.||.. .+++. ..-..+..-|.... |.+...-+..+..+.... +..........++..++++..+.+
T Consensus 148 ~Lc~~-----~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 148 PLCEA-----EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHH-----hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 99932 22221 22333444443222 333333222322222222 122233345567777887776665
No 249
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.86 E-value=0.069 Score=51.89 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=34.4
Q ss_pred ccccccccCc--CCee--ccCcccccHHHHHHHHHhCCCCCCCCcccccCCCC
Q 008835 175 RCPISLELMK--DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 223 (551)
Q Consensus 175 ~Cpic~~~~~--~Pv~--~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~ 223 (551)
.||+|.+.|. |--. -+||...|+.|....-..=+..||.||.......+
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 4999999884 3222 47898888888654443335679999988776553
No 250
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.46 E-value=9 Score=39.63 Aligned_cols=220 Identities=12% Similarity=0.105 Sum_probs=130.3
Q ss_pred HHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC----CCchHHHh--------hcCCcH
Q 008835 285 AAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN----DSNKGTIV--------NAGAIP 352 (551)
Q Consensus 285 ~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~----~~~~~~i~--------~~g~i~ 352 (551)
.|+..|-.+....+..-..+.+.|++..++..|...-....+. -.+...+ ++.+.... ..+.++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK 78 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLK 78 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCcccccccccccCHHHHHHHH
Confidence 4566676776666666777888999999999886531111111 0011000 11111111 122233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcC-Ccch---hHHhhh-hCcHHHHHHHhccCC---hhHHHHHHHHHHHhccCCChH
Q 008835 353 DIVDVLKNGSMEARENAAATLFSLSV-IDEN---KVAIGA-AGAIPALIRLLCDGT---PRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 353 ~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~~~---~~~i~~-~~~i~~Lv~lL~~~~---~~~~~~a~~aL~nL~~~~~~~ 424 (551)
.|+++ +..+.. .... -..+.. ...+..|..++.+.. ..+-..|+..+..+..+++..
T Consensus 79 ~lLk~---------------l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~ 143 (379)
T PF06025_consen 79 SLLKF---------------LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS 143 (379)
T ss_pred HHHHH---------------HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch
Confidence 33333 222222 1111 112233 345556666776643 567778888999888876655
Q ss_pred H-HHHHcCChHHHHHhhc-c---CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCH--HHHH-HHH---
Q 008835 425 A-RAVRAGIVPPLMRFLK-D---AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSP--RNRE-NAA--- 493 (551)
Q Consensus 425 ~-~l~~~g~i~~Lv~lL~-~---~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~--~~k~-~A~--- 493 (551)
. .+.++|+++.+++.+. . ++.++....-.+|..||-+..|.+.+.+.+.++.+++++.+... ..+. ..+
T Consensus 144 ~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~l 223 (379)
T PF06025_consen 144 FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNL 223 (379)
T ss_pred hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHH
Confidence 5 5668999999999998 4 45666666677888999999999999999999999999976431 1111 122
Q ss_pred -HHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh
Q 008835 494 -AVLWAICTGDAEQLKIARELDAEEALKELSE 524 (551)
Q Consensus 494 -~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 524 (551)
..+-.|.++.|..+..+++. ++..+-++..
T Consensus 224 G~~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~~ 254 (379)
T PF06025_consen 224 GNSFDELMRHHPSLKPDIIDA-IIKILDRLVE 254 (379)
T ss_pred HHHHHHHHccCHHHHHHHHHH-HHHHHHHHHH
Confidence 33445677777666655554 3444444433
No 251
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=92.45 E-value=4.4 Score=45.42 Aligned_cols=265 Identities=17% Similarity=0.098 Sum_probs=153.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKR-NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
.++.....++...++.+..++.....++.. +...+..+.....+|.+-.+..+.+..++...+....+++---. +..-
T Consensus 356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t 434 (759)
T KOG0211|consen 356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT 434 (759)
T ss_pred chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC
Confidence 345555666655566666666666555532 22334556666678888888888888888777766666643211 1111
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 424 (551)
-.-.++.++..+++..++++.+..+.+..+-... ..-........+|.++.+-.....+++...+..+.-++....
T Consensus 435 -i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-- 511 (759)
T KOG0211|consen 435 -ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-- 511 (759)
T ss_pred -ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--
Confidence 1235677777788888888888887765543322 223334444667777777666667888888888777766544
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHH---HHHHHHHHHhc
Q 008835 425 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRE---NAAAVLWAICT 501 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~---~A~~~L~~L~~ 501 (551)
..+.+.-.-+.+...+.+....+++.|...+..++..-. .+.-. ...++.++.+...++-..|. .++..|..++.
T Consensus 512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 233333333333344444445677777777777665322 22211 12455555555444433333 33343443333
Q ss_pred CCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 502 GDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 502 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
. .+.....++.+..+..+..+.+|-.++..|..+..
T Consensus 590 ~------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 590 Q------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred c------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 2 23344567777777777777777777777766543
No 252
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.41 E-value=2.3 Score=45.69 Aligned_cols=166 Identities=22% Similarity=0.237 Sum_probs=92.0
Q ss_pred chhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH
Q 008835 226 NYVLKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA 305 (551)
Q Consensus 226 n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~ 305 (551)
+...+.+.+++..+.-..+|.- ...++..++++....+..++.+|++.|-.+|++++++-..++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l----------------~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva 98 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDL----------------QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA 98 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGG----------------HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhh----------------HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence 3455666666665555545443 246899999999999999999999999999998777666654
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHh---cCCHHHHHHHHHHHHH-hcCCc-
Q 008835 306 EAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK---NGSMEARENAAATLFS-LSVID- 380 (551)
Q Consensus 306 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~---~~~~~~~~~aa~~L~~-Ls~~~- 380 (551)
..|+++|.++++.....+=.+|..|-..+ ..+.+..+..-+. +++..+|+.+...|.. |-...
T Consensus 99 -----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 99 -----DVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp -----HHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred -----HHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 78999999988766665555555543211 2345666666665 6677888888877742 21111
Q ss_pred c-hh-HHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 381 E-NK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 381 ~-~~-~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
+ .. ..=.+.-++..+-.+|.+-+..--...+.+|..+-.
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 0 00 000111233344455555444444455566666655
No 253
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=0.098 Score=48.94 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCCCcccccccccCcCCe----eccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCc
Q 008835 170 IPDDFRCPISLELMKDPV----IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT 224 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv----~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 224 (551)
-...|.|||.+-.|..-. +-+|||.|....+.+.- ..+|+.|+..+...+.+
T Consensus 108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 108 QRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred ccceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 356799999999997654 34999999888776653 56899999999877743
No 254
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.10 E-value=25 Score=39.90 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=132.3
Q ss_pred cHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhc----CCC----HHHHHHHHH
Q 008835 264 DRAAIDALLGKLANG-----NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS----STD----PRTQEHAVT 330 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~-----~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a~~ 330 (551)
+-+++..++..+.+. ..+.....++.|+..++ -..||..+.+.|+++.|+..|. .+. ..+-+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 446788888888642 22333444555555555 6889999999999999998885 333 566666666
Q ss_pred HHHhcccCCCc------hHHHhhc-------CCcHHHHHHHhcC----CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHH
Q 008835 331 ALLNLSINDSN------KGTIVNA-------GAIPDIVDVLKNG----SMEARENAAATLFSLSVIDENKVAIGAAGAIP 393 (551)
Q Consensus 331 ~L~nLs~~~~~------~~~i~~~-------g~i~~Lv~~L~~~----~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~ 393 (551)
++-.|..+... ....... .-++.|++.+.+. ++.+....+++|-+|+..+..+....-. .+.
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F~ 272 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HFK 272 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HHH
Confidence 66555332111 1111011 1255666666544 5788888999999998876543333211 222
Q ss_pred HHHHHhc--c---CChhHHHHHHHHHHHhcc----CC---ChHHHHHHcCChHHHHHhhccCCh--------h-------
Q 008835 394 ALIRLLC--D---GTPRGKKDAATAIFNLSI----YQ---GNKARAVRAGIVPPLMRFLKDAGG--------G------- 446 (551)
Q Consensus 394 ~Lv~lL~--~---~~~~~~~~a~~aL~nL~~----~~---~~~~~l~~~g~i~~Lv~lL~~~~~--------~------- 446 (551)
+.+++=. . ++.... +..++.++. +. .-+..+++.|++...++.|...-+ +
T Consensus 273 p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred HhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 2222211 1 112222 334444432 22 124468899999999888865222 2
Q ss_pred -hHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc-CC-HHHHHHHHHHHHHHhcCC
Q 008835 447 -MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GS-PRNRENAAAVLWAICTGD 503 (551)
Q Consensus 447 -~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~-~~-~~~k~~A~~~L~~L~~~~ 503 (551)
....++.+|.-|+......+.++..+++ .++.-|.. .+ ..+-..|=.+|-.|+.++
T Consensus 350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 2356888888888865544444556666 44444443 22 334445555666666533
No 255
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=4.3 Score=42.36 Aligned_cols=226 Identities=15% Similarity=0.057 Sum_probs=127.9
Q ss_pred hcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHhhh-hCcHHH
Q 008835 317 LSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGA-AGAIPA 394 (551)
Q Consensus 317 L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~~~i~~ 394 (551)
..+++..++..|+..|+|++..-+.+..-...-.++.++.-|.++ +.++.-.+..+|..+...-.+.....- ..+.-.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 345677899999999999988733333323344577777777665 578888888888776543322222111 144455
Q ss_pred HHHHhccCChhHHHHHHHHHHHhccCCChHH--HHHH--cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhh-
Q 008835 395 LIRLLCDGTPRGKKDAATAIFNLSIYQGNKA--RAVR--AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG- 469 (551)
Q Consensus 395 Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~--~l~~--~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~- 469 (551)
+..++.+.+++.+..|..+...|+....... .+.+ .+...+|+-.|.++++.+ ..|+......|.-.-.+++..
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l~rke~~~ 425 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNLVRKELYH 425 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchhHHHHHHH
Confidence 6777888889999999888888876544433 3443 234455556666666543 334444433333222222111
Q ss_pred ----------------------hC-CCHHHHHHHHhc-------CC-HHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHH
Q 008835 470 ----------------------QA-EPIPVLMEVIRT-------GS-PRNRENAAAVLWAICTGD-AEQLKIARELDAEE 517 (551)
Q Consensus 470 ----------------------~~-~~v~~L~~lL~~-------~~-~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~ 517 (551)
+. ...+-++.++.+ .+ +.+++.|+..--+.--+. +..+..+-..-...
T Consensus 426 ~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~ 505 (533)
T KOG2032|consen 426 LFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRS 505 (533)
T ss_pred HHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Confidence 00 111222222221 12 344555444433333222 23333333334566
Q ss_pred HHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 518 ALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 518 ~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
.|..+....-+++++.|.+++..+.+
T Consensus 506 ~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 506 SLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHccCCCchhHHHHHHHhhhHhh
Confidence 67777788889999999998887753
No 256
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.90 E-value=1.5 Score=42.43 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhccc-CCCchHHHhhcCCcHHHHHHHh
Q 008835 282 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLK 359 (551)
Q Consensus 282 ~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~ 359 (551)
....|+..|.-++--.+..|..+.....+..|+.+|.. ..+.++..++.+|..+-. ++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567788888887789999999999999999999954 578999999988887655 5777777778999999999998
Q ss_pred cC--CHHHHHHHHHHHH-Hhc
Q 008835 360 NG--SMEARENAAATLF-SLS 377 (551)
Q Consensus 360 ~~--~~~~~~~aa~~L~-~Ls 377 (551)
+. +.+++-.+...|+ +|.
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 76 5778888887764 444
No 257
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.89 E-value=5.7 Score=44.53 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=111.6
Q ss_pred HHHHhcCC-cchhHHhhhhCcHHHHHHHhcc-CChhHHHHHHHHHHHhccCCChHHHHHHcCCh--HHHHHhhcc-CChh
Q 008835 372 TLFSLSVI-DENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIV--PPLMRFLKD-AGGG 446 (551)
Q Consensus 372 ~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i--~~Lv~lL~~-~~~~ 446 (551)
+|+++... .++...+...++...+...++. ........++..+.|++...+.+........+ ..+-.++.. .+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45555544 3577888888999999999986 45678889999999999877654432211111 122223333 3336
Q ss_pred hHHHHHHHHHHHhcChhh------HH------------------HhhhCCCHHH-HHHHHhc-CCHHHHHHHHHHHHHHh
Q 008835 447 MVDEALAILAILASHQEG------KT------------------AIGQAEPIPV-LMEVIRT-GSPRNRENAAAVLWAIC 500 (551)
Q Consensus 447 ~~~~al~~L~nL~~~~~~------~~------------------~i~~~~~v~~-L~~lL~~-~~~~~k~~A~~~L~~L~ 500 (551)
....|+++|+.+..+.+. +. .+.....+.+ +..++.. ..+..+..|++++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 677788888887765221 11 1111223333 5556654 45888999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHH
Q 008835 501 TGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILEL 540 (551)
Q Consensus 501 ~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~ 540 (551)
..+++++..+.+.|+++.+..+.... ....+..+..++..
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 99999999999999999998875433 55666666655544
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.83 E-value=0.41 Score=52.57 Aligned_cols=44 Identities=20% Similarity=0.493 Sum_probs=37.1
Q ss_pred CCCCCcccccccccCcCCee-ccCcccccHHHHHHHHHhCCCCCCCCcc
Q 008835 169 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQ 216 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~ 216 (551)
.+-+.-.|..|.-.+.-|++ ..|||.|.+.|.+ .+...||.|..
T Consensus 836 ~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred ceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 34455689999999999987 7999999999988 46788999975
No 259
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.78 E-value=0.054 Score=50.10 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=38.0
Q ss_pred CCccccccc-ccCcCCee----cc-CcccccHHHHHHHHHhCCCCCC--CCcccccC
Q 008835 172 DDFRCPISL-ELMKDPVI----VS-TGQTYERSCIQKWLDAGHKTCP--KTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~-~~~~~Pv~----~~-cgh~~~~~ci~~~~~~~~~~CP--~c~~~l~~ 220 (551)
.+-.||+|. +.+-.|-+ -| |-|..|.+|+.+.|..|...|| -|++.+..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 345899997 45556643 24 9999999999999999999999 58765543
No 260
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.085 Score=55.69 Aligned_cols=41 Identities=29% Similarity=0.533 Sum_probs=33.8
Q ss_pred CCCCCcccccccccC----cCCeeccCcccccHHHHHHHHHhCCCCCC
Q 008835 169 VIPDDFRCPISLELM----KDPVIVSTGQTYERSCIQKWLDAGHKTCP 212 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~----~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP 212 (551)
.+.+-++|+||...+ ..||.+-||||.|+.|.+.... .+||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 445668999997766 4799999999999999998764 4677
No 261
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.53 E-value=3.4 Score=46.72 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=120.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHhcccCCCchHHHhh
Q 008835 269 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVN 347 (551)
Q Consensus 269 ~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 347 (551)
+.+-..+.+.+|..+.+|+..+.....+.. ......-.|.+-.+++... +.|..+...|+..|..|+..-..-..=..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 445556668889999999999988876433 1111111233444444333 34777888888888888764222222224
Q ss_pred cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC--hHH
Q 008835 348 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG--NKA 425 (551)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~--~~~ 425 (551)
.++++.|++-+..-...+++.+..++-..+.. -.-...++.++.+++++++..+......+......-+ ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 56788888888887777777666665544331 1112567888899999999888876666655443222 222
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 008835 426 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 460 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~ 460 (551)
.-.-.++++.++....+.+.+++..|..++..+..
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 33345678888888888999999998888876655
No 262
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.52 E-value=9.6 Score=41.15 Aligned_cols=133 Identities=19% Similarity=0.238 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~ 344 (551)
.....++...+ ++.....-|+.-|....+.-++.... ++..++.+..+.|..+|..|+..|-.++.+ ++.-..
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 45566666655 56788888889999888877765543 467899999999999999999999999986 344444
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhc---cCChhHHHHHHHHHHH
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---DGTPRGKKDAATAIFN 416 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~---~~~~~~~~~a~~aL~n 416 (551)
+ .+.|+++|..+++.....+-.+|..|-..+ ..+.+..|+.-+. ++++.+++.++..|..
T Consensus 97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 3 578899998887555554555555443222 1245566666554 5677788888887753
No 263
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.48 E-value=3.4 Score=43.42 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 266 AAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 266 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
..+..++....+ .++..+..++..+..+...-+..- .+ ..++..+...+ ...+...+..++.++.-++ |.
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----Ka 260 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KA 260 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HH
Confidence 466677776554 346777888888888875411111 00 12233333333 2334444444444443332 11
Q ss_pred HHh-----hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cc--------hhHHhhhh----CcHHHHHHHhccCChh
Q 008835 344 TIV-----NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DE--------NKVAIGAA----GAIPALIRLLCDGTPR 405 (551)
Q Consensus 344 ~i~-----~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~--------~~~~i~~~----~~i~~Lv~lL~~~~~~ 405 (551)
.++ ....++.|+++|.+ +++...++..+.-|..+ ++ +...+... ..+|.|++..+..+..
T Consensus 261 Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 261 LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE 338 (415)
T ss_pred HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh
Confidence 222 12246667777776 56677788888777655 22 11222222 5677888777777777
Q ss_pred HHHHHHHHHHHhccCCChHHHHHH-cCChHHHHHhhccCChhhHHHHHHHHHHHhcCh
Q 008835 406 GKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 462 (551)
Q Consensus 406 ~~~~a~~aL~nL~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~ 462 (551)
.+..-+.||.++..+-+....+-+ ...+|.|++-|..++..++..++.+|..+....
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888889999999886664333333 357888899998888889999999999888754
No 264
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=91.43 E-value=4.1 Score=43.97 Aligned_cols=166 Identities=18% Similarity=0.197 Sum_probs=103.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHH---hcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhc
Q 008835 272 LGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA---EAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNA 348 (551)
Q Consensus 272 v~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~ 348 (551)
+..+..-+++.+.=|+..||.+.++...+-..+. ...++..++..+. .++..+..++++|.|+-.++.++..++..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3344445678888899999999887665544433 1235666666665 57888899999999999887777776642
Q ss_pred --CCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cchhHHhhhhCcHHHHHHHhcc-----CChhHHHHHHHHHHHhcc
Q 008835 349 --GAIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLLCD-----GTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 349 --g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~a~~aL~nL~~ 419 (551)
-.+..+.+.=...+..++...+....|+|.. ..+- + .+..+.|..++.. .+.+.....+.||.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-~---~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-Q---LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-c---cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 2233333322222344555444444555422 1111 1 2444444444433 133456678899999999
Q ss_pred CCChHHHHHHcCChHHHHHhhcc
Q 008835 420 YQGNKARAVRAGIVPPLMRFLKD 442 (551)
Q Consensus 420 ~~~~~~~l~~~g~i~~Lv~lL~~ 442 (551)
.+.+..++...--+..+++-+++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHH
Confidence 99888888887777777777765
No 265
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.39 E-value=3.4 Score=42.71 Aligned_cols=96 Identities=15% Similarity=0.262 Sum_probs=77.4
Q ss_pred cCCHHHHHHhhcCC---CHHHHHHHHHHHHhcccCCCc-hHHHhhcCCcHHHHHHHh-cC---CHHHHHHHHHHHHHhcC
Q 008835 307 AGAIPLLVELLSST---DPRTQEHAVTALLNLSINDSN-KGTIVNAGAIPDIVDVLK-NG---SMEARENAAATLFSLSV 378 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~~L~-~~---~~~~~~~aa~~L~~Ls~ 378 (551)
......|..++++. .+.+--.|+.++..+..+++. -..+.+.|.++.+++.+. .+ +.++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 34566666677664 467888888888888776555 556668999999999998 54 57788888889999999
Q ss_pred CcchhHHhhhhCcHHHHHHHhccC
Q 008835 379 IDENKVAIGAAGAIPALIRLLCDG 402 (551)
Q Consensus 379 ~~~~~~~i~~~~~i~~Lv~lL~~~ 402 (551)
+......+.+.+.++.+++++.+.
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999999998775
No 266
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.34 E-value=0.29 Score=30.47 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.4
Q ss_pred cHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 391 AIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
.+|.+++++++++++++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999864
No 267
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.33 E-value=1.2 Score=40.95 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh-HHHHHhcCCHHHHHHhhcC---------CCHHHHHHHHHHHHhc
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN-RVCIAEAGAIPLLVELLSS---------TDPRTQEHAVTALLNL 335 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~-r~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~nL 335 (551)
.....++..+.+..... +.+..|....+.++.. -..+++.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 56778888887665432 5556665555444432 3456678999999998854 3557888899999999
Q ss_pred ccCCCchHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008835 336 SINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLS 377 (551)
Q Consensus 336 s~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls 377 (551)
..+..+...++ ..+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 88777766666 5889999999999999999999999988775
No 268
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=12 Score=44.52 Aligned_cols=234 Identities=16% Similarity=0.112 Sum_probs=124.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 387 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (551)
-.||.|.++=.+++..+|.....+=..|..++.+-..-.-..+++.|+.-|.+..+.+|+.++-+|..|-...++-...-
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 46788888888889998875555444455454332222224567777777777789999999999999976654322221
Q ss_pred h-hCcHHHHHHHhccCChhHHH---HHHHHHHHhccCCChHHHHH-HcCChHHHHHhhc-----cCChhhHHHHHHHHHH
Q 008835 388 A-AGAIPALIRLLCDGTPRGKK---DAATAIFNLSIYQGNKARAV-RAGIVPPLMRFLK-----DAGGGMVDEALAILAI 457 (551)
Q Consensus 388 ~-~~~i~~Lv~lL~~~~~~~~~---~a~~aL~nL~~~~~~~~~l~-~~g~i~~Lv~lL~-----~~~~~~~~~al~~L~n 457 (551)
. ......+++.+++-.+.+++ .++.+|..|+..-..-..-. ...++..++++|- +.-++++..++.++..
T Consensus 1078 ~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~d 1157 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMD 1157 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHH
Confidence 1 14455555555554444554 45666776653211100000 0112334444443 3456788899999999
Q ss_pred HhcChhhHHHhhhCCCHHHHHHHHhcCCHH-----------HHHHHHHHHH-HHhcCCH--HHHHHH-------HHcCcH
Q 008835 458 LASHQEGKTAIGQAEPIPVLMEVIRTGSPR-----------NRENAAAVLW-AICTGDA--EQLKIA-------RELDAE 516 (551)
Q Consensus 458 L~~~~~~~~~i~~~~~v~~L~~lL~~~~~~-----------~k~~A~~~L~-~L~~~~~--~~~~~~-------~~~g~i 516 (551)
|+.+....-.-.-...+|.|+.....-.+. ...+|+..+. +.+.++| +..... +=+..+
T Consensus 1158 l~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeeli 1237 (1702)
T KOG0915|consen 1158 LAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELI 1237 (1702)
T ss_pred HHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHH
Confidence 998654411111123455555554432222 2233333332 2333443 111111 223467
Q ss_pred HHHHHHhhhC-ChHHHHHHHHHHHHH
Q 008835 517 EALKELSESG-TDRAKRKAGSILELL 541 (551)
Q Consensus 517 ~~L~~ll~~~-~~~~k~~A~~lL~~l 541 (551)
|.+.++++.+ .-..|-.++..+..|
T Consensus 1238 p~l~el~R~sVgl~Tkvg~A~fI~~L 1263 (1702)
T KOG0915|consen 1238 PRLTELVRGSVGLGTKVGCASFISLL 1263 (1702)
T ss_pred HHHHHHHhccCCCCcchhHHHHHHHH
Confidence 8888888776 334444555544444
No 269
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=20 Score=41.16 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHhcccCCCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
..+..|+..|++.+..++..|++.+..++...+ + .++ ..+|...+.++.-. +...-..|+.+|+.|+...-..-.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 567778888888899999999999999998776 2 222 23455556655443 355556888888888742111000
Q ss_pred HhhcCCcHHHHHHHhcC--------CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHH-----HHhccCChhHHHHHH
Q 008835 345 IVNAGAIPDIVDVLKNG--------SMEARENAAATLFSLSVIDENKVAIGAAGAIPALI-----RLLCDGTPRGKKDAA 411 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~--------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv-----~lL~~~~~~~~~~a~ 411 (551)
. -..++|.++.-|.-+ ...+|..|+.+++.++...+... + .+++..|. ..+-+.+..++..|.
T Consensus 417 ~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~-l--~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 417 L-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD-L--KPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred H-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh-h--hHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 0 123455666555321 24588899988888875543210 0 01222222 233345567888888
Q ss_pred HHHHHhccC
Q 008835 412 TAIFNLSIY 420 (551)
Q Consensus 412 ~aL~nL~~~ 420 (551)
.|+......
T Consensus 493 AAlqE~VGR 501 (1133)
T KOG1943|consen 493 AALQENVGR 501 (1133)
T ss_pred HHHHHHhcc
Confidence 888766544
No 270
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.07 E-value=0.2 Score=42.28 Aligned_cols=50 Identities=14% Similarity=0.294 Sum_probs=41.5
Q ss_pred CCcccccccccCcCCeec----cCcccccHHHHHHHHHh--CCCCCCCCcccccCC
Q 008835 172 DDFRCPISLELMKDPVIV----STGQTYERSCIQKWLDA--GHKTCPKTQQTLLHT 221 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~----~cgh~~~~~ci~~~~~~--~~~~CP~c~~~l~~~ 221 (551)
.-+.|.||.+.-.|+..+ .||...|..|.-..|+. -+..||.|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 567899999999998876 59999999999887764 357899999877654
No 271
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.15 Score=40.71 Aligned_cols=27 Identities=22% Similarity=0.753 Sum_probs=23.5
Q ss_pred cCcccccHHHHHHHHHhCCCCCCCCccc
Q 008835 190 STGQTYERSCIQKWLDAGHKTCPKTQQT 217 (551)
Q Consensus 190 ~cgh~~~~~ci~~~~~~~~~~CP~c~~~ 217 (551)
.|+|.|...||.+|++. ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 59999999999999997 5669998764
No 272
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=7.7 Score=44.16 Aligned_cols=251 Identities=18% Similarity=0.196 Sum_probs=151.9
Q ss_pred HHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCC----
Q 008835 287 AGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGS---- 362 (551)
Q Consensus 287 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~---- 362 (551)
..+|..+.+.+.+|...+.++.++..++.++-+ .+-|...+.++.-|...+..+ +....+-.++..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 456778888899999999999999999888843 344445555555544332211 01123456777777641
Q ss_pred ----H----HHHHHHHHHHHHhcCC-cchhHHhhhhCcHHHHHHHhcc----------CChhHHHHHHHHHHHh-----c
Q 008835 363 ----M----EARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCD----------GTPRGKKDAATAIFNL-----S 418 (551)
Q Consensus 363 ----~----~~~~~aa~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~----------~~~~~~~~a~~aL~nL-----~ 418 (551)
. .+......+++.+-.. ...+..+++.+++..|...|.. ++.-+...-...|+.+ +
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 1 2344455666666533 3567778888888888877753 1212222233333332 3
Q ss_pred cCCChHHH-------------HHHcC---------ChHHHHHhh-cc-CChhhH--HHHHHHHHHHhc------Chh---
Q 008835 419 IYQGNKAR-------------AVRAG---------IVPPLMRFL-KD-AGGGMV--DEALAILAILAS------HQE--- 463 (551)
Q Consensus 419 ~~~~~~~~-------------l~~~g---------~i~~Lv~lL-~~-~~~~~~--~~al~~L~nL~~------~~~--- 463 (551)
.++.|+.. +...| +|..|.++- .. ..+.+. ..|+.-+-.+-. .|.
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 44445432 22334 222222221 11 112221 123332322211 122
Q ss_pred --hHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh---hhCChHHHHHHHHHH
Q 008835 464 --GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELS---ESGTDRAKRKAGSIL 538 (551)
Q Consensus 464 --~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~k~~A~~lL 538 (551)
..+.|...|++..++..+-...+..+..-...|-.+++.++.+....-..|+++.|++++ .+|+...-..|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 256677889999999999888899999999999999999988888888899999999886 466666666666666
Q ss_pred HHHH
Q 008835 539 ELLQ 542 (551)
Q Consensus 539 ~~l~ 542 (551)
.+|.
T Consensus 978 emLg 981 (2799)
T KOG1788|consen 978 EMLG 981 (2799)
T ss_pred HHHh
Confidence 6664
No 273
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.51 E-value=12 Score=42.08 Aligned_cols=223 Identities=16% Similarity=0.131 Sum_probs=138.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHHh--hcCCcHH
Q 008835 277 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPD 353 (551)
Q Consensus 277 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~ 353 (551)
+..|.....+.+.+...+.....+...+- -+....+..+.- ..+-++..|+.++..-+. ...+. .+++++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 34566666777777766654222222211 122233333333 344566677776666551 11121 4677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc--CChhHHHHHHHHHHHhccCCChHHHHHHcC
Q 008835 354 IVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD--GTPRGKKDAATAIFNLSIYQGNKARAVRAG 431 (551)
Q Consensus 354 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g 431 (551)
|+++....+.++......+|...+..+.-.....+..+.|.++.++-. .++.+...+--++..|+....+...+ ...
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHH
Confidence 888888888888888888998888777666666667788888877643 45655555555666665533322222 234
Q ss_pred ChHHHHHhhccCC----hhhHHHHHHHHHHHhcC-h-hhHHHhhhCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCH
Q 008835 432 IVPPLMRFLKDAG----GGMVDEALAILAILASH-Q-EGKTAIGQAEPIPVLMEVI-RTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 432 ~i~~Lv~lL~~~~----~~~~~~al~~L~nL~~~-~-~~~~~i~~~~~v~~L~~lL-~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.||.+++.|..+. .....-|+.+|..+.++ + .--+.+.. -++|.+.+.. ++++..+-.++-.+|..+.+.+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 6899999997755 66777888888877774 2 22233332 3566666654 56677788888889988887765
Q ss_pred HHH
Q 008835 505 EQL 507 (551)
Q Consensus 505 ~~~ 507 (551)
+..
T Consensus 693 eq~ 695 (1005)
T KOG2274|consen 693 EQL 695 (1005)
T ss_pred HHH
Confidence 443
No 274
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=5.3 Score=47.22 Aligned_cols=225 Identities=19% Similarity=0.189 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH-HHHHHHHhhChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHhccc--CCCc
Q 008835 266 AAIDALLGKLANGNVEEQRAAA-GELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSI--NDSN 341 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~-~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~ 341 (551)
-....|...+.++++..+..++ |-|...- .....+..... ......+.++|.+.|.-+|..|..-|+-+-. +...
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq-~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQ-YLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 3445566666788888765543 4443332 22222222222 2344788899999999899988877765422 3333
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHH-------HHH---------------HHHHHHHHhcCCcchhHHhhhhCcHHHHHHHh
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSME-------ARE---------------NAAATLFSLSVIDENKVAIGAAGAIPALIRLL 399 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~-------~~~---------------~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL 399 (551)
+..+ ++.|+.-|..|... ... ..-.=|.+|+. .+++...|-.++++-
T Consensus 897 k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LA 965 (1702)
T KOG0915|consen 897 KKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLA 965 (1702)
T ss_pred HHHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHh
Confidence 4333 45555555443211 100 11111222221 122223445555555
Q ss_pred ccC-ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH-HhcChhh-HHHhhhCCCHHH
Q 008835 400 CDG-TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI-LASHQEG-KTAIGQAEPIPV 476 (551)
Q Consensus 400 ~~~-~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~n-L~~~~~~-~~~i~~~~~v~~ 476 (551)
++. ....++-|+--+..|+.....+.+=.-...||.|...=.+++..++ .|+.-+|| |...+.. .+... ...+.-
T Consensus 966 nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~-neIl~e 1043 (1702)
T KOG0915|consen 966 NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYL-NEILDE 1043 (1702)
T ss_pred hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHH-HHHHHH
Confidence 442 2233333444444444332211111112356666666666776654 45666665 4444322 22111 135566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 477 LMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 477 L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
|+.-|.+..-++|+.++-+|..|-.+.+
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCC
Confidence 6666666778999999999999988764
No 275
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.14 E-value=17 Score=40.42 Aligned_cols=195 Identities=14% Similarity=0.170 Sum_probs=124.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhc-ccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh
Q 008835 311 PLLVELLSSTDPRTQEHAVTALLNL-SINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA 389 (551)
Q Consensus 311 ~~Lv~lL~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~ 389 (551)
.-|..+|.+.....+..|+.-+..+ +.+.+ -...++.+|+-..+.+.++++-.---|..-+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 4677888887777777777655554 43332 1335788888888889999886655555554443332222
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHh
Q 008835 390 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAI 468 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i 468 (551)
-|..+-+-|++.++.++..|+++|..+ |.-++..=++-.+-+...+..+-++..|+.++-.|-+- ++...++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 356677788899999999999998765 22233222233445556678888999998888888774 4444433
Q ss_pred hhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHH
Q 008835 469 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAK 531 (551)
Q Consensus 469 ~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k 531 (551)
+..+-.+|.+.++.+--.|+.+.-.+|-. ....+.. -...|+.++..-++=.+
T Consensus 182 -----~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLIHk--nyrklC~ll~dvdeWgQ 234 (968)
T KOG1060|consen 182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLIHK--NYRKLCRLLPDVDEWGQ 234 (968)
T ss_pred -----HHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHhhH--HHHHHHhhccchhhhhH
Confidence 34555667778888888888888888843 3333322 25555655554444333
No 276
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.03 E-value=2.2 Score=41.84 Aligned_cols=182 Identities=17% Similarity=0.212 Sum_probs=104.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcC--CcHHHHHHHhcC----CHHHHHHHHHHHHHhcCCcchhHH
Q 008835 312 LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAG--AIPDIVDVLKNG----SMEARENAAATLFSLSVIDENKVA 385 (551)
Q Consensus 312 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~~L~~~----~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (551)
.+...+..-..+-+--++-.+.-++.++..-..+...+ ....+..++..+ .+..+..+++++.|+-.....+..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 44444444333334445555555555554444443222 345555555443 567788899999999988888877
Q ss_pred hhhh-C-cHHHHHHHhccC----ChhHHHHHHHHHHHhccCCCh-H-HHHHHcCChHHHHHhhc-c-CChhhHHHHHHHH
Q 008835 386 IGAA-G-AIPALIRLLCDG----TPRGKKDAATAIFNLSIYQGN-K-ARAVRAGIVPPLMRFLK-D-AGGGMVDEALAIL 455 (551)
Q Consensus 386 i~~~-~-~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~-~-~~l~~~g~i~~Lv~lL~-~-~~~~~~~~al~~L 455 (551)
+... + .+...+..+... +..++..++..++|++..-.. + ..-.....+..+.+.+. . .+++....++-+|
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAl 226 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVAL 226 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 7765 3 444444444443 567888899999999752111 1 00011123455555332 2 6889999999999
Q ss_pred HHHhcChhhHHHhhhC-CCHHHHHHHHh-cCCHHHHHHHH
Q 008835 456 AILASHQEGKTAIGQA-EPIPVLMEVIR-TGSPRNRENAA 493 (551)
Q Consensus 456 ~nL~~~~~~~~~i~~~-~~v~~L~~lL~-~~~~~~k~~A~ 493 (551)
++|...+......... |+-..+...-. ...+++++.+.
T Consensus 227 GtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 227 GTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 9999876666666553 33333333333 34477776654
No 277
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.88 E-value=0.56 Score=48.38 Aligned_cols=180 Identities=16% Similarity=0.081 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhcccCCCchHH-HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-----cc---hhHHhhhhCc
Q 008835 321 DPRTQEHAVTALLNLSINDSNKGT-IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-----DE---NKVAIGAAGA 391 (551)
Q Consensus 321 ~~~~~~~a~~~L~nLs~~~~~~~~-i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-----~~---~~~~i~~~~~ 391 (551)
+.-++..|++++.-+..++..+.. +.-.++...+...|.+..-..+..++|++.|++.. +. ....+.. ..
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~l 482 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LL 482 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HH
Confidence 334566777777777667666543 33566777788888777778899999999998632 11 1122211 11
Q ss_pred HHHHHHHhc---cCChhHHHHHHHHHHHhccCCCh----HHHHHHcCChHHHHHhh-ccCChhhHHHHHHHHHHHhcChh
Q 008835 392 IPALIRLLC---DGTPRGKKDAATAIFNLSIYQGN----KARAVRAGIVPPLMRFL-KDAGGGMVDEALAILAILASHQE 463 (551)
Q Consensus 392 i~~Lv~lL~---~~~~~~~~~a~~aL~nL~~~~~~----~~~l~~~g~i~~Lv~lL-~~~~~~~~~~al~~L~nL~~~~~ 463 (551)
+..++..-. ....+++..|..+|.|+...-.. --..+..|.+..+.... ....-.++=+|+.++.||..++.
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 222222211 23568888999999998753221 01122223333333222 22455678899999999999876
Q ss_pred hHHH--hhhCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Q 008835 464 GKTA--IGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICT 501 (551)
Q Consensus 464 ~~~~--i~~~~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~ 501 (551)
-.-. =....+++.|..++.+ .+..+|.+|+++|..-..
T Consensus 563 ~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 563 LPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred ccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 5221 1223467888888865 568889999988876554
No 278
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.86 E-value=0.22 Score=48.19 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=38.4
Q ss_pred CCCCCcccccccccCc---CCeeccCcccccHHHHHHHHHhCC--CCCCCCcc
Q 008835 169 VIPDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGH--KTCPKTQQ 216 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~---~Pv~~~cgh~~~~~ci~~~~~~~~--~~CP~c~~ 216 (551)
....-|.||+..+.-. .|+.+.|||..-...+...-+.|. +.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4456699999988775 488999999999999888777664 67999943
No 279
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.84 E-value=9.2 Score=40.20 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=86.0
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHhccC-CC--------hHHHHHHc----CChHHHHHhhccCChhhHHHHHHHHH
Q 008835 390 GAIPALIRLLCDGTPRGKKDAATAIFNLSIY-QG--------NKARAVRA----GIVPPLMRFLKDAGGGMVDEALAILA 456 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~--------~~~~l~~~----g~i~~Lv~lL~~~~~~~~~~al~~L~ 456 (551)
..+..|+.+|.+ +++...|+.++.-|..+ ++ +...+.+. -++|.|++.....+...+...+.+|.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 456777787776 56677788887777665 21 11123333 35777777777666667888888999
Q ss_pred HHhcChhhHHHhhh-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHH
Q 008835 457 ILASHQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKE 521 (551)
Q Consensus 457 nL~~~~~~~~~i~~-~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 521 (551)
.+..+-.....+-+ ...+|.|++-|...++.++..+..+|..+....++....=++ .+++.|+.
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 88886432222222 257899999999899999999999999999887554443111 34555544
No 280
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=89.77 E-value=18 Score=35.80 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh-----cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCC
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-----AGAIPLLVELLSSTDPRTQEHAVTALLNLSIND 339 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~ 339 (551)
.+....|+..+...+.+.+..++....++-+.....|...++ ...+..|+.--.. .+++.-++-..|.....++
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe 156 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE 156 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH
Confidence 367788999999889999999888888877655555544333 1233333333111 2444444333444444445
Q ss_pred CchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hhHHhhhh---CcHHH-HHHHhccCChhHHHHHHHHH
Q 008835 340 SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVAIGAA---GAIPA-LIRLLCDGTPRGKKDAATAI 414 (551)
Q Consensus 340 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~---~~i~~-Lv~lL~~~~~~~~~~a~~aL 414 (551)
.....|....-+.........++-++...|..+...+-.... ....+... ..++. --.++.+++.-++..+..+|
T Consensus 157 ~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kll 236 (342)
T KOG1566|consen 157 FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLL 236 (342)
T ss_pred HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhH
Confidence 445556667777777777777777777777777766543321 11122222 22233 55678889999999999999
Q ss_pred HHhccCCChHHHHHH----cCChHHHHHhhccCChhhHHHHHHHHHHHhcChh
Q 008835 415 FNLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 463 (551)
Q Consensus 415 ~nL~~~~~~~~~l~~----~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~ 463 (551)
+.+-.+..|...|.. ...+..++.+|++++..++-.|..+.+....++.
T Consensus 237 g~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 237 GELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 999998888776553 4678899999999999999999999999888754
No 281
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=5.4 Score=43.76 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=38.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHH
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLF 374 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~ 374 (551)
..+|.+...|.+.+.-+|++|+-+++.+-... ..+ -.++-+.+-++|... ++..+.+|--.|+
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L-~pDapeLi~~fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHL-IPDAPELIESFLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhh-cCChHHHHHHHHHhccCchhHHHHHHHHH
Confidence 46788888899999999999998887764321 111 133344445555433 5555655554433
No 282
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.34 E-value=0.3 Score=48.31 Aligned_cols=61 Identities=16% Similarity=0.348 Sum_probs=47.0
Q ss_pred CCCCCcccccccccCcCCee-ccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 236 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 236 (551)
...+-+.||+|.+.|..|+. -.-||.-|..|=.+ -...||.|+.++.+ +.+.++...++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence 34566889999999999974 56799999999653 24569999988873 3667777777654
No 283
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=88.93 E-value=0.25 Score=45.83 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=45.0
Q ss_pred CcccccccccCcCCee-ccCcccccHHHHHHHHHh-CCCCCCC--CcccccCCCCccchhhHH
Q 008835 173 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDA-GHKTCPK--TQQTLLHTALTPNYVLKS 231 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~-~~~~CP~--c~~~l~~~~~~~n~~l~~ 231 (551)
+.+|||++.....|++ ..|+|.|++.-|...+.. ....||. |.+......+.-.+.|..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~ 251 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEK 251 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHH
Confidence 4689999999999986 689999999999999872 3456886 777776666655544433
No 284
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.90 E-value=6 Score=38.75 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=90.3
Q ss_pred CChhHHHHHHHHHHHhccCCChHHHHHHcC--ChHHHHHhhccC----ChhhHHHHHHHHHHHhcChh-hH-HHhhhCCC
Q 008835 402 GTPRGKKDAATAIFNLSIYQGNKARAVRAG--IVPPLMRFLKDA----GGGMVDEALAILAILASHQE-GK-TAIGQAEP 473 (551)
Q Consensus 402 ~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g--~i~~Lv~lL~~~----~~~~~~~al~~L~nL~~~~~-~~-~~i~~~~~ 473 (551)
..+..+..++++++|+..+..++..+.+.. .+-..+..+... +..++..+..++.|++..-. .+ ..-.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 356778889999999999999998877643 344443333332 56777788888889987311 11 10011123
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhh-CChHHHHHHHHH
Q 008835 474 IPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSI 537 (551)
Q Consensus 474 v~~L~~lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~l 537 (551)
+..+.+.+.. .+++..-.++-+|.+|+..++.........|+-..+...... ..++++.-+.++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 4555553332 468888899999999998887777766667777777666544 478888877654
No 285
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.78 E-value=2.4 Score=39.57 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcCh--hhHHHhhhCCCHHHHHH
Q 008835 407 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQ--EGKTAIGQAEPIPVLME 479 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~al~~L~nL~~~~--~~~~~i~~~~~v~~L~~ 479 (551)
.-.|+..|..++++++.+..++++.+---|..+|.. ..+-++-.++++++.|..+. .....+..+..||.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 456788888999999999999988765555555532 34556778999999999864 34556677899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 480 VIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 480 lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
++..|+.-.|.-|+.++..+-.++
T Consensus 197 Ime~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999888989998887766554
No 286
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.35 E-value=19 Score=37.53 Aligned_cols=187 Identities=17% Similarity=0.131 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh-hHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCch
Q 008835 266 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 266 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
..+..++..++.. ..+.+..|+..|..+..++.. .+.... ...+-.+++.|++ .+...+..|+++|..+..+...+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 4556666666544 456788899988877665522 222111 1234577888888 78889999999999998754332
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHH-HHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAA-TLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~-~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
-.=...-++..+++.-.+...++...|.. ++.-++.....+ .|..+..++.+.+...-..++..+..|+..-
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence 21111224555555555555555544443 334444443322 2333344444455555555565666665432
Q ss_pred ChHH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 008835 422 GNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 460 (551)
Q Consensus 422 ~~~~-~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~ 460 (551)
..-. .-+=..+.|.+++-..+.+..++..|+.+|..+..
T Consensus 438 ~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 438 SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 2111 12224678888888888888888888888876654
No 287
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.22 E-value=27 Score=34.12 Aligned_cols=213 Identities=16% Similarity=0.102 Sum_probs=123.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHhcccCCCchHHHhh
Q 008835 270 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIVN 347 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 347 (551)
.|=..|.+.++..+.+|+..|......-+... ....-|..|+.++.+ .|......++.++..|...... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~-----~ 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF-----S 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----C
Confidence 34467788899999999999988776544221 222336677776655 3555555556666666532221 1
Q ss_pred cCCcHHHHHHH-hcC-----CHHHHHHHHHHHHHhcCCcchhHHhhh--hCcHHHHHHHhcc-CChhHHHHHHHHHHHhc
Q 008835 348 AGAIPDIVDVL-KNG-----SMEARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLLCD-GTPRGKKDAATAIFNLS 418 (551)
Q Consensus 348 ~g~i~~Lv~~L-~~~-----~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~~~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~ 418 (551)
.+....+++.+ ++. ....|..+-.+|..|-.. +...+.. .+.+..+++.+.. .||+....+...+..+.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 11122233322 222 234566666777766443 3333322 3678888888865 47888887777777665
Q ss_pred cCCChHHHHHHcCChHHHHHhhcc---------C-Ch--hhHHHHHHHH-HHHhcChhhHHHhhhCCCHHHHHHHHhcCC
Q 008835 419 IYQGNKARAVRAGIVPPLMRFLKD---------A-GG--GMVDEALAIL-AILASHQEGKTAIGQAEPIPVLMEVIRTGS 485 (551)
Q Consensus 419 ~~~~~~~~l~~~g~i~~Lv~lL~~---------~-~~--~~~~~al~~L-~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~ 485 (551)
..-+. ....+.+.+.+.. + ++ -..+.-...| ..+++++.- ..-++|.|++-|.+++
T Consensus 153 ~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 153 QEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTS 221 (262)
T ss_pred Hhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCC
Confidence 43321 2233334443322 1 11 1233333333 344544422 2247999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 008835 486 PRNRENAAAVLWAICTGD 503 (551)
Q Consensus 486 ~~~k~~A~~~L~~L~~~~ 503 (551)
+.+|..+..+|...+..-
T Consensus 222 ~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIENY 239 (262)
T ss_pred cHHHHHHHHHHHHHHHHC
Confidence 999999999998866533
No 288
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.89 E-value=3 Score=31.86 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 008835 448 VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDAEQLKIARELD 514 (551)
Q Consensus 448 ~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~-~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g 514 (551)
...|++++.++++.+.+...+.+.+.++.++++.... ...+|--|..+|.-+++. .+.+..+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 4579999999999999999988889999999999864 478898899888888764 35555555544
No 289
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.88 E-value=9.3 Score=43.31 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=118.1
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHH-hccCChhHHHHHHHHHHHhccCCChHHHHHH
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRL-LCDGTPRGKKDAATAIFNLSIYQGNKARAVR 429 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~l-L~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~ 429 (551)
-+.+-.-+.+.++.-+..|+.-+................+.+..++.. +.+.+..+...|+..|..|+..-..-..=..
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344444455667777777777776554433311111112444444443 3445677777888888888764333333334
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHH
Q 008835 430 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLK 508 (551)
Q Consensus 430 ~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~ 508 (551)
.++.+.+++-+.+....+++.++.++-..+.. ..-....+.+...+.+++|..+..+...+.......+ ....
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 57788899999888888888888887666551 1112467788888999999999987766666544332 2222
Q ss_pred HHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 509 IARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 509 ~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.---.++++.++....+.+..+|..|..++--+-
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2223457888888888888999988887665553
No 290
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.47 E-value=37 Score=38.74 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=84.2
Q ss_pred CCHHHHHHhhcC--------CCHHHHHHHHHHHHhccc----CCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 308 GAIPLLVELLSS--------TDPRTQEHAVTALLNLSI----NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS 375 (551)
Q Consensus 308 g~i~~Lv~lL~~--------~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~ 375 (551)
|.++.++..|.+ .++.-.+.|+.++++|+. .+..+..+ +.=.++.+.-.++++..-+|..|||++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 667778887762 356677888888888873 22223322 33345555666677778899999999999
Q ss_pred hcCCc-chhHHhhhhCcHHHHHHHhc-cCChhHHHHHHHHHHHhccCCChHHH-HHH--cCChHHHHHhhcc
Q 008835 376 LSVID-ENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKAR-AVR--AGIVPPLMRFLKD 442 (551)
Q Consensus 376 Ls~~~-~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~-l~~--~g~i~~Lv~lL~~ 442 (551)
++..+ .....+ ..++....+.|. +.+-.++..|+-||..+..+.+.... +.. -+.+..|+.+.+.
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 98543 222222 345666666666 55678899999999998776654322 222 2445555555554
No 291
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.39 E-value=38 Score=37.53 Aligned_cols=202 Identities=20% Similarity=0.237 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCC------------------C
Q 008835 279 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND------------------S 340 (551)
Q Consensus 279 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------------------~ 340 (551)
++..|.--+.-|+..+..++.-+.. .|..+..+|.+.++.+...|+.+|.+|+.++ +
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 3445555555666665544433322 3456677776666555555555555544333 2
Q ss_pred chHH-Hh-------h-------cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc----
Q 008835 341 NKGT-IV-------N-------AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD---- 401 (551)
Q Consensus 341 ~~~~-i~-------~-------~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~---- 401 (551)
|... |+ . .|.+-.++.+|.+++-+++..+..+...|+.. .-+.-++.+|+.
T Consensus 294 nnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss----------rNvediv~~Lkke~~k 363 (948)
T KOG1058|consen 294 NNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS----------RNVEDIVQFLKKEVMK 363 (948)
T ss_pred cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh----------ccHHHHHHHHHHHHHh
Confidence 2111 11 0 11222233444455555555555555555433 344455555432
Q ss_pred -------CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCC
Q 008835 402 -------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEP 473 (551)
Q Consensus 402 -------~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~ 473 (551)
.+.+.+..-..+|...+..-.. +.+.+|+.|++++.+.++......+..+...-. .|.-|..++
T Consensus 364 T~~~e~d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii---- 435 (948)
T KOG1058|consen 364 THNEESDDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASII---- 435 (948)
T ss_pred ccccccccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHH----
Confidence 1233455666677665542211 335678999999998877666666666654443 455555444
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCH
Q 008835 474 IPVLMEVIRT-GSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 474 v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~ 504 (551)
..+++-+.. .+..+-+.|+|++..-|....
T Consensus 436 -~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 436 -EKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred -HHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 333333322 345666788888888887664
No 292
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.13 E-value=0.41 Score=39.72 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=28.2
Q ss_pred CCCCCCCcccccccccCcCCee--ccCcccccHHHHH
Q 008835 167 SPVIPDDFRCPISLELMKDPVI--VSTGQTYERSCIQ 201 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv~--~~cgh~~~~~ci~ 201 (551)
...+.++-.|++|.+.+..+++ .||||.|...|+.
T Consensus 72 ~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 72 SVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred eEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3456777889999998887764 5999999999975
No 293
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.08 E-value=2.5 Score=34.03 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 337 (551)
......+..|.++.+.+|-.++..|+.+..... ...+-..+++..+...|+++|+-+--+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 467788888999999999999999999997655 1222234677888889999999999999999998874
No 294
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.06 E-value=20 Score=39.30 Aligned_cols=113 Identities=22% Similarity=0.172 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
+.+..+++...+.+..++..++..|+.+..++.+ +..-+-.+....+..-+.+..+.+|..|+.+|..+-.++.+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 5667777777788889999999999999864332 333333466677777777889999999999999886443221
Q ss_pred hhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHh
Q 008835 346 VNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAI 386 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (551)
+..++..+..+++++ ++|+|..| |.+++.+......|
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~I 198 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCI 198 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhH
Confidence 123566777777755 78998854 45555554443333
No 295
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.02 E-value=6.8 Score=45.17 Aligned_cols=132 Identities=24% Similarity=0.203 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHH
Q 008835 277 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV 355 (551)
Q Consensus 277 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv 355 (551)
.++|+.|..|.-+|..+..-+.+... ...|.|+..+. ++++.+|-+++.+++-++..-+|- + .-.-+.|.
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl---i-e~~T~~Ly 1004 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL---I-EPWTEHLY 1004 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc---c-chhhHHHH
Confidence 35788999998888887654433222 34799999997 689999999999999987643221 1 11345677
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 356 DVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 356 ~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
+.|.+.++.+|++|.-+|.+|-..+ .|--.|.++.+...|.+++.+++..|=.....|+...
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 7788889999999999999997654 3444699999999999999888877766666665543
No 296
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.87 E-value=52 Score=36.72 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=65.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHH---
Q 008835 309 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVA--- 385 (551)
Q Consensus 309 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~--- 385 (551)
..+.+-..|++....+...|+.++.++..-. -..+ .. ++..|--++.++..-+|-.|.++|..++........
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l-~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SREL-AP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhc-ch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 4556666777788899999999998886421 1111 11 666677777888888999999999998865432221
Q ss_pred ------hhhh---CcHHHHHHHhccCChhH----HHHHHHHHHHhc
Q 008835 386 ------IGAA---GAIPALIRLLCDGTPRG----KKDAATAIFNLS 418 (551)
Q Consensus 386 ------i~~~---~~i~~Lv~lL~~~~~~~----~~~a~~aL~nL~ 418 (551)
|... -.-..+..+|+.|+... .+......++++
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis 367 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS 367 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 1111 23345556777765433 334444444444
No 297
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.69 E-value=2.6 Score=47.13 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=98.8
Q ss_pred cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhh--hCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH
Q 008835 348 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 425 (551)
...+|.|++.....+...+.+-..+|.++-.+-.. ..+.. ...+|.|++.|.-.+..++..++.++.-+..-.+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 35778888877755556666666677665443222 22222 2677888888888888888888888877655433222
Q ss_pred HHHHcCChHHHHHhhccCC---hhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHH
Q 008835 426 RAVRAGIVPPLMRFLKDAG---GGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAV 495 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~---~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~ 495 (551)
.---.-+||.++.+=.+.+ ..+++.|+.+|..|.. .|...-.-....++..|.+.|.+...-+|+.|+.+
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2222335677766665544 4678899999999999 56554444455678888899988878899988765
No 298
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.26 E-value=4.6 Score=46.45 Aligned_cols=140 Identities=24% Similarity=0.266 Sum_probs=104.9
Q ss_pred CHHHHHHhhcC----CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchh
Q 008835 309 AIPLLVELLSS----TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENK 383 (551)
Q Consensus 309 ~i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~ 383 (551)
+.|.++...+. .+|++|..|.-+|+.+..-+. . .....++.|+.++. ++++.+|.++..+++.|+..-.+-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~-fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---E-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---H-HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 67777887754 589999999999998743211 1 12345899999997 678999999999999887543321
Q ss_pred HHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHH-cCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 384 VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 384 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
. ...-+.|...|++.++.+++.|+..|.+|-..+ +++ .|.++.+.-+|.++++.+.+-|-.....|+..
T Consensus 996 i----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 996 I----EPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred c----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 1 124466778889999999999999999997653 343 58899999999999998888887666666553
No 299
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.13 E-value=12 Score=41.91 Aligned_cols=192 Identities=16% Similarity=0.117 Sum_probs=119.4
Q ss_pred HHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcH--HHHHHHhcCCH-H
Q 008835 289 ELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIP--DIVDVLKNGSM-E 364 (551)
Q Consensus 289 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~--~Lv~~L~~~~~-~ 364 (551)
.|.+...+++++...+.+.|++..+...+.. .+..++..++..+.|++...+++........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7778888899999999999999999999986 577899999999999998766655444322222 33334444443 6
Q ss_pred HHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHH-hccCCChHHHHHHcCChHH-HHHhhcc
Q 008835 365 ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN-LSIYQGNKARAVRAGIVPP-LMRFLKD 442 (551)
Q Consensus 365 ~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~~~~~~l~~~g~i~~-Lv~lL~~ 442 (551)
.-..|+.+|+.+....+. ... ...+..+...+.. +........++.....+.+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~---------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTE---------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Ccc---------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 666777777766554332 111 1112222222222 2222223333333333333 4445543
Q ss_pred -CChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 008835 443 -AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWA 498 (551)
Q Consensus 443 -~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~-~~~~k~~A~~~L~~ 498 (551)
..+..+--|+.++.++.. +++....+.+.|+++.+...-... ...+++.+..++-+
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 566778889999999888 466777777788888877655432 35566666655543
No 300
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=12 Score=41.03 Aligned_cols=134 Identities=24% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCHHHHHHh-hcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHH
Q 008835 308 GAIPLLVEL-LSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVA 385 (551)
Q Consensus 308 g~i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (551)
++|..|+.+ .++.|.++++.|+.+|+-+...+ ....+..+++|... ++-+|.-++-+|.-.+....++..
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 345555555 34456777777777776655432 23466677777544 677888888787766655444433
Q ss_pred hhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 008835 386 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 455 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L 455 (551)
| ..|-.+..+...=++.-|+-++.-+........----.|+...+.+.+.+.+++....--++|
T Consensus 626 i------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 626 I------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred H------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3 333333344444456666666665543221111111124455566667665544433333333
No 301
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.36 E-value=76 Score=36.41 Aligned_cols=233 Identities=14% Similarity=0.128 Sum_probs=128.5
Q ss_pred HHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhh---ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHh
Q 008835 266 AAIDALLGKLAN--------GNVEEQRAAAGELRLLAKR---NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLN 334 (551)
Q Consensus 266 ~~i~~Lv~~L~s--------~~~~~~~~a~~~L~~L~~~---~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n 334 (551)
+.++.+++.|.+ .++.....|+..+..++.- ....+ -..+.=.++.+...++++.--+|..|+|++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 456666666651 2344566677777776631 11122 22233356677777888888899999999999
Q ss_pred ccc-CCCchHHHhhcCCcHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcc-hhHHhhhh--CcHHHHHHHhccCChhHHHH
Q 008835 335 LSI-NDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDE-NKVAIGAA--GAIPALIRLLCDGTPRGKKD 409 (551)
Q Consensus 335 Ls~-~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~--~~i~~Lv~lL~~~~~~~~~~ 409 (551)
.+. +-.+.... ..+++.....|. +....++..|+-+|..+-.+.. ....+... +....|+.+.+..+.+....
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 883 32222222 345677777777 5567899999999988766654 33445443 55666666666544333333
Q ss_pred HHHHHHHhccCCChHH-HHHH--cCChHHHHHhhcc---C---ChhhHHHHHHHHHHHhc---ChhhHHHhhh---CCCH
Q 008835 410 AATAIFNLSIYQGNKA-RAVR--AGIVPPLMRFLKD---A---GGGMVDEALAILAILAS---HQEGKTAIGQ---AEPI 474 (551)
Q Consensus 410 a~~aL~nL~~~~~~~~-~l~~--~g~i~~Lv~lL~~---~---~~~~~~~al~~L~nL~~---~~~~~~~i~~---~~~v 474 (551)
.+..+. +..++.-. ..++ ........+++.. . +.+=.-.|.++|..+.+ +-+....+.. ..++
T Consensus 567 vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l 644 (1010)
T KOG1991|consen 567 VMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL 644 (1010)
T ss_pred HHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 332221 11111111 1111 2234445555542 1 22223345556555544 2233333332 2355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 475 PVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 475 ~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
+.+-.+|++.-.+.-+.+..++..+....
T Consensus 645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 645 PVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 66666666666777788888887776655
No 302
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.05 E-value=2.2 Score=47.71 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=102.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh--hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHH
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVA 385 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (551)
..+|.|++.........+-+=+.+|.++-.+-+ +..+. -...+|.|++.|.-.+..++..+..++.-+......-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 689999998886555556666666666655322 23333 256788999999999999988888887765433222111
Q ss_pred hhhhCcHHHHHHHhccCC---hhHHHHHHHHHHHhcc-CCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 008835 386 IGAAGAIPALIRLLCDGT---PRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 455 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~---~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L 455 (551)
-.-...+|.++.+=.+.+ ..++..|+..|..|.. .+.+.-.-....++..|.+.|.++..-++..|..+=
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 112356777777755544 5789999999999998 555555566677899999999988888888887653
No 303
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.03 E-value=7.4 Score=34.90 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=79.0
Q ss_pred CHHHHHHhhcCC-CHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh
Q 008835 309 AIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 387 (551)
Q Consensus 309 ~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (551)
.++.|+++|+.+ +..+|..++++|+.|-.-+..+.+....+ .+.-. -...+...... .+.+.... ..-....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~~---~l~~~~~~-~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTDI---SLPMMGIS-PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchhh---HHhhccCC-CchHHHH
Confidence 456778888775 68999999999999965444444422111 01000 00111111111 11111110 1122223
Q ss_pred hhCcHHHHHHHhccCChhH-HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 008835 388 AAGAIPALIRLLCDGTPRG-KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA 459 (551)
Q Consensus 388 ~~~~i~~Lv~lL~~~~~~~-~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~ 459 (551)
-..++..|+.+|++.+-.. ...++.++.++....+.+..-.=..++|.++..+...++..++..+.-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3347888999998875332 33566777776644333322222457888999998777777777776666654
No 304
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.97 E-value=0.36 Score=45.45 Aligned_cols=57 Identities=16% Similarity=0.395 Sum_probs=37.2
Q ss_pred cccccccC-cCCee-ccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHH
Q 008835 176 CPISLELM-KDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWC 237 (551)
Q Consensus 176 Cpic~~~~-~~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 237 (551)
|--|..-- .+|.. ++|+|.||..|...-. ...||.|++++....+.+| +-.-|..+.
T Consensus 6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS--LPTDIKSYF 64 (233)
T ss_pred eccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc--cchhHHHHc
Confidence 44454322 56664 6999999999965432 2379999998766555544 555565554
No 305
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.71 E-value=0.31 Score=56.03 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCc-CCeeccCcccccHHHHHHHHHhCCCCCCCCc
Q 008835 169 VIPDDFRCPISLELMK-DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQ 215 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~-~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~ 215 (551)
.+...+.|+||++.++ .-.+..|||-||..|+..|... +..||.|.
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 3456679999999999 6678899999999999999986 66799997
No 306
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.67 E-value=6 Score=38.94 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=89.3
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhh--hCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHH
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV 428 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~ 428 (551)
+...+..|.+.+++....++..+..|+.... ..+.. ..+|..+++-+++....+-+.|+.++..|...-++...-.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~--e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP--ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777788888888888887776543 11111 2577788888888877888889999988876544433221
Q ss_pred HcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 429 RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 429 ~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
-.+.+..|+.--...+.-+++.|-.+|..+..+..-. .+++.|...+++.+++++..++....+
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 1222222222222244557888888888887763322 356777777888888888877655444
No 307
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=84.11 E-value=9.1 Score=31.14 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=55.1
Q ss_pred HcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 008835 429 RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 496 (551)
Q Consensus 429 ~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L 496 (551)
..+.+..|+..+..++....+.++..|..|..++.+...+.+-|++..|.++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34667888888888888889999999999999999999999999999877776666676666554444
No 308
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=84.10 E-value=0.64 Score=45.11 Aligned_cols=43 Identities=28% Similarity=0.661 Sum_probs=34.7
Q ss_pred CcccccccccCc----CCeeccCcccccHHHHHHHHHhCCCCCCCCcc
Q 008835 173 DFRCPISLELMK----DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQ 216 (551)
Q Consensus 173 ~~~Cpic~~~~~----~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~ 216 (551)
++-||||.+.+. +|..++|||+.-..|++.....+ .+||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 345999998664 56678999998888888777776 99999976
No 309
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.01 E-value=30 Score=38.22 Aligned_cols=133 Identities=24% Similarity=0.227 Sum_probs=91.3
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchhHH
Q 008835 307 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVA 385 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (551)
.++=|.+-+++.+.|+-+|...+.++..--... .+.++|..|+.+ ..+.+.++|..|.-+|.-++..+.
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---- 587 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---- 587 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh----
Confidence 345566667778888888888776664211111 134567777777 566789999999999987766553
Q ss_pred hhhhCcHHHHHHHhcc-CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 008835 386 IGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA 459 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~ 459 (551)
...|..+.+|.. .++-++.-|+.+|.=-|....++.. +..|-++..++..-++..|+-.++.+.
T Consensus 588 ----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 588 ----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 356777888765 5788999999999888887776653 334455555666667777777776543
No 310
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.80 E-value=20 Score=39.85 Aligned_cols=167 Identities=20% Similarity=0.192 Sum_probs=90.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHhcccCC-CchHHHhhcCCcHHHHHHHhc----CCHHHHHHHHHHHHHhcC----C
Q 008835 309 AIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPDIVDVLKN----GSMEARENAAATLFSLSV----I 379 (551)
Q Consensus 309 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~~L~~----~~~~~~~~aa~~L~~Ls~----~ 379 (551)
++..+.+++.+...... .|...|..|.... .. ....+..+..+++. .++.++..|.-+++.|.. .
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 56777777777433322 2444455544321 11 12235556666654 245667777766666542 2
Q ss_pred c------chhHHhhhhCcHHHHHHHhc----cCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccC---Chh
Q 008835 380 D------ENKVAIGAAGAIPALIRLLC----DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA---GGG 446 (551)
Q Consensus 380 ~------~~~~~i~~~~~i~~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~---~~~ 446 (551)
. ..........+++.|...|. .++...+..++.||.|+-. ...++.|.+++... +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 1 11122222356677776665 3466778889999999853 23677778877664 566
Q ss_pred hHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 008835 447 MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWA 498 (551)
Q Consensus 447 ~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~--~~~~k~~A~~~L~~ 498 (551)
++..|+.+|..++..... .+.+.++.++.+. ++++|-.|..+|..
T Consensus 540 ~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 777888888877553211 2345677777653 36777777655544
No 311
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.62 E-value=50 Score=36.31 Aligned_cols=165 Identities=16% Similarity=0.104 Sum_probs=90.7
Q ss_pred CHHHHHHhhcCCCHHH--HHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcC----CHHHHHHHHHHHHHhc----C
Q 008835 309 AIPLLVELLSSTDPRT--QEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG----SMEARENAAATLFSLS----V 378 (551)
Q Consensus 309 ~i~~Lv~lL~~~~~~~--~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~----~~~~~~~aa~~L~~Ls----~ 378 (551)
++..+.+.+.++.... ...++..+......+ ....++.+.++++++ ...++..|.-++++|. .
T Consensus 358 a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P-------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 358 ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYP-------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC-------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 5666666676653221 222232222222221 123466777777654 3456666666666554 2
Q ss_pred CcchhHHhhhhCcHHHHHHHhcc----CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhc-c--CChhhHHHH
Q 008835 379 IDENKVAIGAAGAIPALIRLLCD----GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK-D--AGGGMVDEA 451 (551)
Q Consensus 379 ~~~~~~~i~~~~~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~-~--~~~~~~~~a 451 (551)
..+.........+++.|...|.. ++..-+..++.+|.|+.... .+..|..++. + .+..++..|
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~A 500 (574)
T smart00638 431 NTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAA 500 (574)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHH
Confidence 22211112223566777766653 34555677888998875532 3445555554 2 345688889
Q ss_pred HHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 008835 452 LAILAILASH-QEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWA 498 (551)
Q Consensus 452 l~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~--~~~~k~~A~~~L~~ 498 (551)
+.+|..++.. +. .+-+.++.+..+. ++++|..|+.+|..
T Consensus 501 v~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 501 ILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 9999988752 22 2345566666653 36777776655543
No 312
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=83.10 E-value=8.5 Score=33.74 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~ 337 (551)
..++..|...|.++++.+|..|+..|-.+.+.. ......+...+++..|++++.. .++.++..++..+.+-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999874 4466778888999999999974 678899999988887764
No 313
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.00 E-value=9.3 Score=34.12 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=82.2
Q ss_pred HHHHHHHhcc--CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHH-
Q 008835 392 IPALIRLLCD--GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTA- 467 (551)
Q Consensus 392 i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~- 467 (551)
+..++..|.. .++.++..|+-++..+- +..+... ..-+-..+-..+...+.+-...++.++..|--. ++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 3445554443 45678888888887772 1111111 111122222333333334455667777766654 444444
Q ss_pred hhhCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC-ChH-HHHHHHHHH
Q 008835 468 IGQAEPIPVLMEVIR--TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDR-AKRKAGSIL 538 (551)
Q Consensus 468 i~~~~~v~~L~~lL~--~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~-~k~~A~~lL 538 (551)
+...|..+.++.++. ..+...+..++.+|..=|.. ...+. .+...+++.|..+...+ ++. +|..|.-.|
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 456788999999998 56677888888888777754 34444 44444699999999655 444 555554433
No 314
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.78 E-value=9.5 Score=32.99 Aligned_cols=73 Identities=27% Similarity=0.305 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS---TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~nLs~ 337 (551)
..++..|...|+++++.+|..|+..|-.+.+.... ....+....++..|++++.. .++.++..++..+.+.+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999987654 66677777888889999975 478899999999887764
No 315
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=82.35 E-value=6.2 Score=43.19 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=89.6
Q ss_pred CCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHh-ccCChhHHHHHHHHHHHhccCCChHHHH
Q 008835 349 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSIYQGNKARA 427 (551)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~~~~~l 427 (551)
.+++.|...+++.+..+++.++..+..++..-+ ...+..-++|.+-.+. ++.+..++.+++.++..+. ..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~l 460 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QRL 460 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HHH
Confidence 456666666677788888888888887765544 3334445667776653 4456788889999988887 223
Q ss_pred HHcCChHHHHHhh---ccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC
Q 008835 428 VRAGIVPPLMRFL---KDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS 485 (551)
Q Consensus 428 ~~~g~i~~Lv~lL---~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~ 485 (551)
-...+++.+..++ ...++.++...+.+..++.....++..+..+.++|.++.+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 3344455555544 447889999999999998885444456666789999998887766
No 316
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=82.22 E-value=13 Score=40.64 Aligned_cols=254 Identities=15% Similarity=0.137 Sum_probs=143.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCC
Q 008835 271 LLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGA 350 (551)
Q Consensus 271 Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~ 350 (551)
++.-+.-.+.+++..-...|.. ..+..-..++..-.+|.|+..+..++ .-...+..+..+...-.... ...++
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~---~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i 331 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLID---RLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRI 331 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccch
Confidence 3344444455555544444433 22233344555566788887777665 22233333444433211111 56778
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHc
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRA 430 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~ 430 (551)
++.|+++++..+..+|..-+.-+-.. .+.....+....++|.+..-+.+.++.+++..+..+..|+..=.-+ .+..
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~ 407 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNG 407 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcH
Confidence 99999999999887776444333322 1223445666789999999999999999999999888876532222 1222
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCC-CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 008835 431 GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAE-PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKI 509 (551)
Q Consensus 431 g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~-~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~ 509 (551)
..+..+..+-.+.+..++....-+|..++.+-... ...+ .+....+-+++.-...|..++..++..+..-+..
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--- 481 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--- 481 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh---
Confidence 22333333333455666666666666666542111 1222 2334444566665667888888877776543211
Q ss_pred HHHcCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 510 ARELDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 510 ~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
-+...+.+.+.-+..+.+..++..|-..++..
T Consensus 482 ~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 482 EVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 12234566666666666666666666665544
No 317
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=82.11 E-value=1.8 Score=44.92 Aligned_cols=173 Identities=18% Similarity=0.111 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCcchhHHhh-hhCcHHHHHHHhccCChhHHHHHHHHHHHhcc-----CCChHH---HHHHcCChHHH
Q 008835 366 RENAAATLFSLSVIDENKVAIG-AAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-----YQGNKA---RAVRAGIVPPL 436 (551)
Q Consensus 366 ~~~aa~~L~~Ls~~~~~~~~i~-~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-----~~~~~~---~l~~~g~i~~L 436 (551)
+..|.+++.-+...+..+...+ -..+...+...+.+..-..+..++|++.|++. .+..+. ++... .+..+
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~ 486 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKM 486 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHH
Confidence 3444444443333333332222 22455555555656566778889999999873 122111 12111 12222
Q ss_pred HHhhc---cCChhhHHHHHHHHHHHhcChhh-----HHHhhhCCCHHHHH-HHHhcCCHHHHHHHHHHHHHHhcCCHH-H
Q 008835 437 MRFLK---DAGGGMVDEALAILAILASHQEG-----KTAIGQAEPIPVLM-EVIRTGSPRNRENAAAVLWAICTGDAE-Q 506 (551)
Q Consensus 437 v~lL~---~~~~~~~~~al~~L~nL~~~~~~-----~~~i~~~~~v~~L~-~lL~~~~~~~k~~A~~~L~~L~~~~~~-~ 506 (551)
...-. .....+..+|+..|.|+...-+. -..+.+ +.+..+. .....+...+|-+|+.++.||-++..- .
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 22221 14567888899999988763221 111111 2222222 222335678999999999999987631 1
Q ss_pred HHHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHH
Q 008835 507 LKIARELDAEEALKELSESG-TDRAKRKAGSILEL 540 (551)
Q Consensus 507 ~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~ 540 (551)
...=+...+++.|..++.+. +-.++..|+.+|..
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 11123334688888887654 77777777777653
No 318
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.04 E-value=8.9 Score=41.79 Aligned_cols=107 Identities=16% Similarity=0.036 Sum_probs=79.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHH------cCChHHHHHhhccCChhhHHHHHHHHHHHhcCh---
Q 008835 392 IPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR------AGIVPPLMRFLKDAGGGMVDEALAILAILASHQ--- 462 (551)
Q Consensus 392 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~------~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~--- 462 (551)
...++.+|++.+...+-..+.+++|+..+-....++++ ...+..|++-|.+..+-++..|+.++..++.-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 56678889998888888888899998765444444443 345667777778889999999999999988743
Q ss_pred -hhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 463 -EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 463 -~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
..|.. ++....+-|++.+.-+|.+|+.++..|-...
T Consensus 381 ~~~r~e-----v~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRHE-----VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 23443 3456677788888899999999998876533
No 319
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.86 E-value=54 Score=32.03 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=100.4
Q ss_pred CCcHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcc--------hhHHhhhhCcHHHHHHHhccCC----hhHHHHHHHHH
Q 008835 349 GAIPDIVDVLKNG--SMEARENAAATLFSLSVIDE--------NKVAIGAAGAIPALIRLLCDGT----PRGKKDAATAI 414 (551)
Q Consensus 349 g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~--------~~~~i~~~~~i~~Lv~lL~~~~----~~~~~~a~~aL 414 (551)
|..+.+..++-.| +...-+.+..+|..|....+ .+-.+.-...+|.++.-+.+++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 6777777777666 44556667777777764422 2333333367788888887766 24455677788
Q ss_pred HHhccCCChHHHHHHcCChHHHHHhhcc-CC---hhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHH
Q 008835 415 FNLSIYQGNKARAVRAGIVPPLMRFLKD-AG---GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRE 490 (551)
Q Consensus 415 ~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-~~---~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~ 490 (551)
..+|...+ .+.+..++..+.. .- .+....++..|..-.. |+. +...+..|+++|.++.+..|.
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHH
Confidence 88774221 1223333333322 11 2222333333332211 111 124577899999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHH
Q 008835 491 NAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILEL 540 (551)
Q Consensus 491 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~ 540 (551)
....+|..+-..-+-... ....++.+|.++++++-. ..|..+|..
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~ 251 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDE 251 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHH
Confidence 999999888764421111 445588999999877643 244444443
No 320
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=81.65 E-value=1.8 Score=38.09 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=35.5
Q ss_pred CCCcccccccccCcCCeeccCccc-----ccHHHHHHHHHh-CCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQT-----YERSCIQKWLDA-GHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~-----~~~~ci~~~~~~-~~~~CP~c~~~l~~ 220 (551)
..+..|=||.+-.. +..-||... ..++|+++|+.. +...||.|+.++..
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 34567999987743 444566643 379999999986 56789999987753
No 321
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=81.48 E-value=59 Score=32.29 Aligned_cols=155 Identities=16% Similarity=0.078 Sum_probs=111.2
Q ss_pred hhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC-ChHHHHHH-----cCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 008835 386 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-GNKARAVR-----AGIVPPLMRFLKDAGGGMVDEALAILAILA 459 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~~~~~l~~-----~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~ 459 (551)
+...|.++.|+..+...+-+.+++++....|+-..+ +.+.-.++ ...+..|+.--.. .+++.-.+-..|....
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECI 153 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999987543 23322221 2334444443211 3556666666777777
Q ss_pred cChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCc----HHHHHHHhhhCChHHHHHHH
Q 008835 460 SHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDA----EEALKELSESGTDRAKRKAG 535 (551)
Q Consensus 460 ~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~----i~~L~~ll~~~~~~~k~~A~ 535 (551)
+++.-...+....-+.....+++.++-++-..|..+.-.+.......+.++...+. .+.--.|+.+++.-.++.+.
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 78877888888888999999999998888888888888877766666666655543 34455678888888888888
Q ss_pred HHHHHH
Q 008835 536 SILELL 541 (551)
Q Consensus 536 ~lL~~l 541 (551)
.+|..+
T Consensus 234 kllg~l 239 (342)
T KOG1566|consen 234 KLLGEL 239 (342)
T ss_pred HhHHHH
Confidence 877655
No 322
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=81.43 E-value=6 Score=31.80 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=56.4
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 008835 433 VPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 505 (551)
Q Consensus 433 i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~ 505 (551)
....+..+.++.+.++..++..|..|..... ...+...+.+..++..|++.++-+--+|+..|..|+...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455667788888999999999999998766 12222236677888888888899999999999999987654
No 323
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=81.17 E-value=66 Score=32.60 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hChhhHHHHHh-cC-CHHHHHHhhcCC-----C--------HHHHHHHHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAK-RNADNRVCIAE-AG-AIPLLVELLSST-----D--------PRTQEHAVT 330 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~-~~~~~r~~i~~-~g-~i~~Lv~lL~~~-----~--------~~~~~~a~~ 330 (551)
.++.+.+.|++.....+..+++-|..++. .+......+.. -+ -.+.|.+++... + +.+|...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 36777788888888888888899988887 55444444443 34 345666666431 1 278888888
Q ss_pred HHHhcccC--CCchHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHH-hcCCc----chhHHhhhhCcHHHHHHHhccC
Q 008835 331 ALLNLSIN--DSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFS-LSVID----ENKVAIGAAGAIPALIRLLCDG 402 (551)
Q Consensus 331 ~L~nLs~~--~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~-Ls~~~----~~~~~i~~~~~i~~Lv~lL~~~ 402 (551)
.+..+... +..+..+. ..+.+..+.+-|..+++++....+.+|.. +..+. ..|..+....++..|..+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 88777553 44466666 56778889999999889998888888874 43333 3456666678888899977766
Q ss_pred Ch----hHHHHHHHHHHHhccCCCh
Q 008835 403 TP----RGKKDAATAIFNLSIYQGN 423 (551)
Q Consensus 403 ~~----~~~~~a~~aL~nL~~~~~~ 423 (551)
++ .+...+-..|..+|.++.+
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCCc
Confidence 55 7788888889898876643
No 324
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.11 E-value=64 Score=35.60 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCcHHHH
Q 008835 278 GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIV 355 (551)
Q Consensus 278 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv 355 (551)
++++.|..|--.|..+..-+.+.. ..-.|.|+..+. +++|.+|.+|+-.|+.+... ....+. .-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence 468888888888877654333222 134689999887 78999999999888877542 111111 123455
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 356 DVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 356 ~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
+-|.+.+..++..+..++..|-... ++--.|.++.+..+|.+++.++...|-..+..++..+
T Consensus 978 rrL~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 5566667889999999998875432 2223588889999999988888877777777776644
No 325
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.95 E-value=1.9 Score=43.69 Aligned_cols=36 Identities=17% Similarity=0.422 Sum_probs=28.4
Q ss_pred CCCcccccccccCc--CCe-eccCcccccHHHHHHHHHh
Q 008835 171 PDDFRCPISLELMK--DPV-IVSTGQTYERSCIQKWLDA 206 (551)
Q Consensus 171 ~~~~~Cpic~~~~~--~Pv-~~~cgh~~~~~ci~~~~~~ 206 (551)
..-|.|.||.+... +-+ .+||+|.||+.|...++..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 45688999987553 333 4799999999999999873
No 326
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=80.85 E-value=2.1 Score=32.67 Aligned_cols=48 Identities=15% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCcccccccccC-----cCCeec--cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 172 DDFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 172 ~~~~Cpic~~~~-----~~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
..-.|.||++-. -+|.+. .|+...||.|++-=.+.|+..||.|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 345799998744 245443 588889999999888889999999986654
No 327
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.66 E-value=8.8 Score=37.82 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
...+...+..|.+.+|+....++..|+.|+.-.++....... ..|..+++-+++....+-..|+.++..+...-.+.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-- 163 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-- 163 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--
Confidence 367888999999999999999999999998755543333222 35677788888888889999999998886543222
Q ss_pred HhhcCCcHHHHHHH-hcC---CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 345 IVNAGAIPDIVDVL-KNG---SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 345 i~~~g~i~~Lv~~L-~~~---~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
+.. .++.++..| ..+ +.-+++.|-.+|..+...-.. ..+++.|+..+.+.++.++..++....+.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 211 344444444 222 355777777777766433211 23567777777777777777666655443
No 328
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=80.53 E-value=0.61 Score=50.66 Aligned_cols=50 Identities=24% Similarity=0.617 Sum_probs=40.7
Q ss_pred CCcccccccccCcCCeeccCcccccHHHHHHHHHh--CCCCCCCCcccccCC
Q 008835 172 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLHT 221 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~--~~~~CP~c~~~l~~~ 221 (551)
....||||.....+|+.+.|.|.||+.|+-.-|.. +...||+|+......
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 45679999999999999999999999998876653 456799998655443
No 329
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=79.96 E-value=70 Score=33.57 Aligned_cols=144 Identities=16% Similarity=0.068 Sum_probs=87.2
Q ss_pred cHHHHHHHhcc-CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHH-HHHHHHhcChhhHHHh
Q 008835 391 AIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEAL-AILAILASHQEGKTAI 468 (551)
Q Consensus 391 ~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al-~~L~nL~~~~~~~~~i 468 (551)
.+-.+++.|.+ .+...++.|++.|..++.+...+-.=-..-+|..+++.-.+.++++...|. .++..++++..-
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~---- 405 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL---- 405 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch----
Confidence 45667778877 677889999999999998766543211223566666666666665555544 344555554222
Q ss_pred hhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 469 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 469 ~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
-.|..+..++.+.+...--.++..+-.++..=...--.-+-..+.|.+++-..+....+|+.|.-.|--+
T Consensus 406 ---~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 406 ---QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred ---hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 2344555555554444444555566666654322211222345788888888888888888887655443
No 330
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.61 E-value=12 Score=32.90 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~ 337 (551)
..++..|...|.+.++.+|..|+..|-.+.+.... ....+....++..|++++.. .++.++...+..+...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999986553 55677888999999999988 789999999988887764
No 331
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.20 E-value=12 Score=41.08 Aligned_cols=126 Identities=20% Similarity=0.134 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC
Q 008835 405 RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG 484 (551)
Q Consensus 405 ~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~ 484 (551)
++..-+++.+..|-..+..-. +-.|.+..|+....+++..++..++.+|+.|......+...+-.+....+..-+.+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 444455555555543322211 234556666666667888999999999999998544444444445666777777778
Q ss_pred CHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHH
Q 008835 485 SPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESG-TDRAKRKAGSIL 538 (551)
Q Consensus 485 ~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL 538 (551)
.|.+|..|+.+|..+-... .+.+ .++..+..+++++ ++++++.|...+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~dee~------~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDEEC------PVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 8999999999998887422 1111 3567777888776 788888877654
No 332
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=78.92 E-value=56 Score=35.90 Aligned_cols=205 Identities=19% Similarity=0.132 Sum_probs=104.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch----HHHhhc---CCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-c
Q 008835 309 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK----GTIVNA---GAIPDIVDVLKNGSMEARENAAATLFSLSVI-D 380 (551)
Q Consensus 309 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~----~~i~~~---g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~ 380 (551)
.+-.|+++|+.-+.+-......-+.. .. ...+ +.+... .++..+.+.+.++..... .++.++..+... .
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhh
Confidence 45566777766554444444333332 11 1122 223333 356667777777642211 122222222111 0
Q ss_pred chhHHhhhhCcHHHHHHHhccC----ChhHHHHHHHHHHHhc----cCCChHHHHHHcCChHHHHHhhcc----CChhhH
Q 008835 381 ENKVAIGAAGAIPALIRLLCDG----TPRGKKDAATAIFNLS----IYQGNKARAVRAGIVPPLMRFLKD----AGGGMV 448 (551)
Q Consensus 381 ~~~~~i~~~~~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~----~~~~~~~~l~~~g~i~~Lv~lL~~----~~~~~~ 448 (551)
.. ....+..+..++.++ ...++..|+-++++|. ...+.+...+-...++.|...|.. .+..-+
T Consensus 389 ~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 389 YP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred cC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 00 023567777777753 3345555555655554 333322222333456666665543 333444
Q ss_pred HHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHh-c--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhh
Q 008835 449 DEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-T--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES 525 (551)
Q Consensus 449 ~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~-~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 525 (551)
..++.+|+|+... ..++.+..++. . .+..+|..|+.+|..++...+. .+.+.|+.+..+
T Consensus 464 ~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n 525 (574)
T smart00638 464 QLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLN 525 (574)
T ss_pred eeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcC
Confidence 5567777776543 34566666665 2 2467899999999988754433 234455565554
Q ss_pred C--ChHHHHHHHHHHH
Q 008835 526 G--TDRAKRKAGSILE 539 (551)
Q Consensus 526 ~--~~~~k~~A~~lL~ 539 (551)
. ++++|..|..+|-
T Consensus 526 ~~e~~EvRiaA~~~lm 541 (574)
T smart00638 526 RAEPPEVRMAAVLVLM 541 (574)
T ss_pred CCCChHHHHHHHHHHH
Confidence 3 5666666655443
No 333
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.84 E-value=10 Score=40.44 Aligned_cols=122 Identities=18% Similarity=0.162 Sum_probs=55.9
Q ss_pred CHHHHHHh-hcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHh
Q 008835 309 AIPLLVEL-LSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAI 386 (551)
Q Consensus 309 ~i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (551)
+|..|+.. .++.|.++++.|+-+|+-++.++ ...+...+++|... +.-+|...+-+|.-.+.....+
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--- 620 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--- 620 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH---
Confidence 34444443 33345555555555555444332 23445555555433 4556655555555444332211
Q ss_pred hhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCC
Q 008835 387 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAG 444 (551)
Q Consensus 387 ~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 444 (551)
-++..|-.+..+.+.-++..|+-++.-+.......-.---.+++..+..++.+.+
T Consensus 621 ---~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 621 ---VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ---HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 1233344444555555566666666655443222111111344555666665543
No 334
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.79 E-value=16 Score=31.67 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHhcCCHHHHHHhhcCCC--HHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSSTD--PRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~nLs~ 337 (551)
..++..|...|+++++.+|..|+..|-.+.+.+ ......+...+++..|++++.... +.++..++..+..-+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999874 456677888899999999998752 3488888888877653
No 335
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.62 E-value=13 Score=32.59 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=60.2
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhh-CChHHHHHHHHHHHHHHhH
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~l~~~ 544 (551)
.++..|-+-|.++++.++..|+.+|-.+..+. ......+.+.+++..|..++.. .+++++.++..++..-...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 46778888888899999999999998888774 5566778888999999999874 4788999999998877653
No 336
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=78.27 E-value=97 Score=34.03 Aligned_cols=180 Identities=18% Similarity=0.140 Sum_probs=96.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhh----hCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHH
Q 008835 354 IVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA----AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR 429 (551)
Q Consensus 354 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~----~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~ 429 (551)
.+.++..-.++.+-.|..+|..+......-..+.. ..++..++..+. +++.-+..+++.|.|+-.++.++..+..
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 44455555666677777777666554432222222 245566666655 6677888999999999998777765554
Q ss_pred c--CChHHHHHhhccCChhhHHHHHHHH-HHHhc--ChhhHHHhhhCCCHHHHHHHHhcC---CH--HHHHHHHHHHHHH
Q 008835 430 A--GIVPPLMRFLKDAGGGMVDEALAIL-AILAS--HQEGKTAIGQAEPIPVLMEVIRTG---SP--RNRENAAAVLWAI 499 (551)
Q Consensus 430 ~--g~i~~Lv~lL~~~~~~~~~~al~~L-~nL~~--~~~~~~~i~~~~~v~~L~~lL~~~---~~--~~k~~A~~~L~~L 499 (551)
. -.+..+.+.=...+..+ ..|++++ .|++- ....- +.++.+.+...+... .+ +..-.+..+|.+|
T Consensus 628 ~~~~i~~~~~~~~s~~~knl-~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNL-QIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred HHHHHhhhhhhhhcccchhH-HHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 3 12222222211122233 3333332 34432 11111 134555555555432 22 2334556677888
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHHhhh-C-ChHHHHHHHHHHHH
Q 008835 500 CTGDAEQLKIARELDAEEALKELSES-G-TDRAKRKAGSILEL 540 (551)
Q Consensus 500 ~~~~~~~~~~~~~~g~i~~L~~ll~~-~-~~~~k~~A~~lL~~ 540 (551)
+..++...+.....+ +..+..-+.. . ++..+.-|..+|++
T Consensus 703 ~t~~~~~~~~A~~~~-v~sia~~~~~~~~~~~~k~~a~~il~~ 744 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRS-VDSIAKKLKEAVSNPSGKNIARDILSL 744 (745)
T ss_pred ccccHHHHHHHHhcC-HHHHHHHHHHhccCchhhHHHHHHHhc
Confidence 888766666666555 4555544433 3 56666666666654
No 337
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.25 E-value=19 Score=32.22 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=76.7
Q ss_pred CcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHH
Q 008835 350 AIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV 428 (551)
Q Consensus 350 ~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~ 428 (551)
.++.|+.+|+++ ++.+|.++..+|+.|...|.++.+....+. +.-. -.+.+.......+ .+.... ..-....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~l---~~~~~~-~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDISL---PMMGIS-PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhHH---hhccCC-CchHHHH
Confidence 467788888877 589999999999999988887766433211 0000 0011111111111 111111 1122233
Q ss_pred HcCChHHHHHhhccCChhh-HHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008835 429 RAGIVPPLMRFLKDAGGGM-VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 499 (551)
Q Consensus 429 ~~g~i~~Lv~lL~~~~~~~-~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L 499 (551)
-..++..|+..|++++..- ...++.++.++......+..-.=...+|.++..+++.++..++.-..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3446778888887743221 2234455544443322221111125789999999987778888765555444
No 338
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=78.04 E-value=13 Score=32.07 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=59.7
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHhhh---CChHHHHHHHHHHHHHHhHH
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSES---GTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~---~~~~~k~~A~~lL~~l~~~~ 545 (551)
.++..|-+-|.++++.++..|+.+|-.+..+.+. ....+.....+..|+.++.. .++.++.++..++.......
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3577888888899999999999999998887755 55666666788889999875 37899999999998877543
No 339
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=77.81 E-value=66 Score=37.25 Aligned_cols=227 Identities=15% Similarity=0.069 Sum_probs=133.5
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCC-HHHHHHHHHHHHHhcCCcchhHH
Q 008835 307 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGS-MEARENAAATLFSLSVIDENKVA 385 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~~~~~~~~ 385 (551)
.+++..|+..|++.|..++-.|+..++.+....+ .-....++..+++++.... ...=..++-+|..|+.-.--...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4678888889999999999999999999987543 1112346677777655443 45555777888888754311110
Q ss_pred hhhhCcHHHHHHHhccC--------ChhHHHHHHHHHHHhccCCChH--HHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 008835 386 IGAAGAIPALIRLLCDG--------TPRGKKDAATAIFNLSIYQGNK--ARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 455 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~--------~~~~~~~a~~aL~nL~~~~~~~--~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L 455 (551)
.. ..++|.++.-|.-. ...++..|+.+++.++..-+.. ..++..=.-..|...+.+.+-.++..|.+++
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 00 14566666555422 2457788888888887643221 2233222223344455677778888887777
Q ss_pred HHHh-cC---hhhHH----------------------Hhhh-CCCHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcCC
Q 008835 456 AILA-SH---QEGKT----------------------AIGQ-AEPIPVLMEVIRTGS-----PRNRENAAAVLWAICTGD 503 (551)
Q Consensus 456 ~nL~-~~---~~~~~----------------------~i~~-~~~v~~L~~lL~~~~-----~~~k~~A~~~L~~L~~~~ 503 (551)
.... +. |.|.. .+.+ .|....+++-|-+.. ..+|+.|+..|..|....
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~ 575 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE 575 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 6443 32 22211 1111 133444444443321 456777777777777655
Q ss_pred HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 504 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 504 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
|++. ..+.++.|+....+++...+..+.-+..-+
T Consensus 576 pk~~----a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 576 PKYL----ADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred HHhh----cccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 5433 356677777777777777776665554443
No 340
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.65 E-value=1.8 Score=43.32 Aligned_cols=52 Identities=29% Similarity=0.477 Sum_probs=43.5
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCcc
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 225 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 225 (551)
...|.+++..+.+||.+..|..|+-..|-.|++. +.+-|.+++++...++++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 3479999999999999999999999999999985 555677777777666654
No 341
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=77.52 E-value=17 Score=31.71 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHhcc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLS 336 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~nLs 336 (551)
..++..+...|++.++.++..|+..|-.+.+.. ......++..+++.-|++++.. .+..++...+..+..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999998854 4466778888999999999963 46789988888887654
No 342
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=77.05 E-value=2.6 Score=28.57 Aligned_cols=39 Identities=15% Similarity=0.448 Sum_probs=22.0
Q ss_pred cccccccCcCCeec---cCcccccHHHHHHHHHhCCC-CCCCC
Q 008835 176 CPISLELMKDPVIV---STGQTYERSCIQKWLDAGHK-TCPKT 214 (551)
Q Consensus 176 Cpic~~~~~~Pv~~---~cgh~~~~~ci~~~~~~~~~-~CP~c 214 (551)
|-+|.++...-+.= .|+-.+...|+..+|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56677776666543 48888999999999986443 59987
No 343
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.80 E-value=16 Score=38.31 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=91.9
Q ss_pred cCCcHHHHHHH----hcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHH-HhccCChhHHHHHHHHHHHhccCCC
Q 008835 348 AGAIPDIVDVL----KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIR-LLCDGTPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 348 ~g~i~~Lv~~L----~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~~~~ 422 (551)
.|.+..++..| .+++...+..|+..|.+.+.....+..-.....+..++. +.+..+.++...++.+|..+.....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 45555554444 455678899999999999877333222222233444444 3344467888888888887765443
Q ss_pred hHHH-HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh--hhHHHhhh--CCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 008835 423 NKAR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ--EGKTAIGQ--AEPIPVLMEVIRTGSPRNRENAAAVLW 497 (551)
Q Consensus 423 ~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~--~~~~~i~~--~~~v~~L~~lL~~~~~~~k~~A~~~L~ 497 (551)
++.- -.=-.+.-.+-.++.+.++.++..|...+..|+... ..+..+.+ .+...+++-.|.+.+|.+- .|+....
T Consensus 333 ~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~ 411 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSEL 411 (533)
T ss_pred hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHH
Confidence 3321 111234455677788888889888888777777643 33333332 2345556666666666543 5666666
Q ss_pred HHhcC
Q 008835 498 AICTG 502 (551)
Q Consensus 498 ~L~~~ 502 (551)
..|.-
T Consensus 412 ~~c~p 416 (533)
T KOG2032|consen 412 RTCYP 416 (533)
T ss_pred HhcCc
Confidence 66653
No 344
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=76.44 E-value=2.2 Score=36.46 Aligned_cols=45 Identities=18% Similarity=0.486 Sum_probs=33.6
Q ss_pred CcccccccccCcC--Cee-ccCcc------cccHHHHHHHHHhCCCCCCCCcccc
Q 008835 173 DFRCPISLELMKD--PVI-VSTGQ------TYERSCIQKWLDAGHKTCPKTQQTL 218 (551)
Q Consensus 173 ~~~Cpic~~~~~~--Pv~-~~cgh------~~~~~ci~~~~~~~~~~CP~c~~~l 218 (551)
...|.||.+...+ -|+ ++||. .||..|+.+|-. .....|.-|..-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I~ 79 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNIK 79 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccceE
Confidence 5679999988876 665 68884 599999999964 355677765443
No 345
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=1.4e+02 Score=33.50 Aligned_cols=139 Identities=14% Similarity=0.078 Sum_probs=81.4
Q ss_pred HHHHHHHHHhc-----CCC---HHHHHHHHHHHHHHHh--hChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 008835 266 AAIDALLGKLA-----NGN---VEEQRAAAGELRLLAK--RNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL 335 (551)
Q Consensus 266 ~~i~~Lv~~L~-----s~~---~~~~~~a~~~L~~L~~--~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL 335 (551)
+.++.+++.|. +++ +...+.|++.+.++.. ..+..-.-+.+.=.++.++..++++.--++..|+..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 66777777772 112 2233344444444432 1111222333444677777888888888889999999888
Q ss_pred ccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh--CcHHHHHHHhccCChhH
Q 008835 336 SINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRG 406 (551)
Q Consensus 336 s~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--~~i~~Lv~lL~~~~~~~ 406 (551)
+.+ -+....-..+.+.....|++.+-.++..|+-+|.-+-.++.....+.++ +.+..|+.+-+.-+.+.
T Consensus 488 eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~ 558 (970)
T COG5656 488 EED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP 558 (970)
T ss_pred HHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH
Confidence 544 2222223446777888888887888888888887776666554555443 44444544444433333
No 346
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=75.96 E-value=2.2 Score=29.53 Aligned_cols=39 Identities=31% Similarity=0.747 Sum_probs=22.5
Q ss_pred cccccccCc--CCeeccCcc-----cccHHHHHHHHHh-CCCCCCCC
Q 008835 176 CPISLELMK--DPVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKT 214 (551)
Q Consensus 176 Cpic~~~~~--~Pv~~~cgh-----~~~~~ci~~~~~~-~~~~CP~c 214 (551)
|-||++.-. +|.+.||+- -..+.|+++|+.. ++..|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 445654432 267777763 3468899999984 56778876
No 347
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=75.40 E-value=1.1e+02 Score=31.77 Aligned_cols=103 Identities=9% Similarity=0.069 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHhccc-CCCchHHH-hhcCCc
Q 008835 279 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-----DPRTQEHAVTALLNLSI-NDSNKGTI-VNAGAI 351 (551)
Q Consensus 279 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~-~~~~~~~i-~~~g~i 351 (551)
+.++..+++++|.++..++...+....+......+++.+... -..++..=++.|.-|.. ....|.++ +..+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 356778899999999999999999999888777777766432 11233333444444433 33445554 478999
Q ss_pred HHHHHHHhcC---------C------HHHHHHHHHHHHHhcCCcc
Q 008835 352 PDIVDVLKNG---------S------MEARENAAATLFSLSVIDE 381 (551)
Q Consensus 352 ~~Lv~~L~~~---------~------~~~~~~aa~~L~~Ls~~~~ 381 (551)
+.+...|.+. . ......++.+++|+.....
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 9999999753 1 1234567788889876643
No 348
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.08 E-value=17 Score=31.86 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=60.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhh-CChHHHHHHHHHHHHHHhH
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~l~~~ 544 (551)
.++..|.+-|.++++.++..|+.+|-.+..+.+ .....+....++..|..++.. .++.++.++..+++...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 457778888888999999999999999887765 455677788899999999988 6889999999998877643
No 349
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=75.01 E-value=87 Score=30.60 Aligned_cols=219 Identities=14% Similarity=0.085 Sum_probs=122.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCcHHHHHHHhc--CCHHHHHHHHHHHHHhcCCcchhHHhhh
Q 008835 312 LLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGA 388 (551)
Q Consensus 312 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~ 388 (551)
.|=..|.++++.+|..|+..|..+... +... ....-+..|+.++.+ .+......++..+..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 455678889999999999999876543 2111 122234556665543 24455555566665555332211111 1
Q ss_pred hCcHHHHHHHhc--cCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhH
Q 008835 389 AGAIPALIRLLC--DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGK 465 (551)
Q Consensus 389 ~~~i~~Lv~lL~--~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~~ 465 (551)
...+..+.+-.+ .-....|..+...|..|..+......-...+.+..+++.+.. .||.....+..++..+...-+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI- 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence 122233332221 123566777888888876553222222234567888888865 6788777777777777653221
Q ss_pred HHhhhCCCHHHHHHHHh-------c---CCH--HHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHH
Q 008835 466 TAIGQAEPIPVLMEVIR-------T---GSP--RNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRK 533 (551)
Q Consensus 466 ~~i~~~~~v~~L~~lL~-------~---~~~--~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~ 533 (551)
......+.+.+. . ++| -.++.-...|.+.-..++.. ..-+++.|++=+.++.+.+|.-
T Consensus 158 -----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 -----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred -----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHH
Confidence 233444444442 1 122 23444444444433333332 2347888999889999999999
Q ss_pred HHHHHHHHHhHH
Q 008835 534 AGSILELLQRID 545 (551)
Q Consensus 534 A~~lL~~l~~~~ 545 (551)
+...|..+-..+
T Consensus 228 ~L~tL~~c~~~y 239 (262)
T PF14500_consen 228 SLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHC
Confidence 998888775543
No 350
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.89 E-value=2.8 Score=31.28 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=26.5
Q ss_pred cccccHHHHHHHHHhCCCCCCCCcccccCCCCccch
Q 008835 192 GQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNY 227 (551)
Q Consensus 192 gh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~ 227 (551)
-+|||..|.+..+. ..||.|+-.+.....+|-.
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa 60 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELVARPIRPAA 60 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhhcCcCChHH
Confidence 46999999987764 5799999988887777743
No 351
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=74.84 E-value=21 Score=39.23 Aligned_cols=149 Identities=13% Similarity=0.153 Sum_probs=96.1
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchhHH
Q 008835 307 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVA 385 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (551)
..++|.|..-+++.+..+|+.++..+-.++..-+ ...+..-++|.|-.+ ++..+..++.+++.++..+. +....
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~ 462 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDK 462 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHH
Confidence 4577888888888999999999999998876432 233444556776666 34456888999999998887 22222
Q ss_pred hhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHH--HHHHHHHHhc
Q 008835 386 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDE--ALAILAILAS 460 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~--al~~L~nL~~ 460 (551)
..-...+.++..-.+..++.+....+.+..++.....+...+....++|.++.+...+.....+. .+..+..+.+
T Consensus 463 ~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~ml~ 539 (700)
T KOG2137|consen 463 AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLMLS 539 (700)
T ss_pred HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHh
Confidence 22223344444444556778888777777777765555445556678888888776654444333 3333444443
No 352
>PHA03096 p28-like protein; Provisional
Probab=74.73 E-value=1.8 Score=42.51 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=30.8
Q ss_pred cccccccccCc-CCe-------eccCcccccHHHHHHHHHhC--CCCCCCCcc
Q 008835 174 FRCPISLELMK-DPV-------IVSTGQTYERSCIQKWLDAG--HKTCPKTQQ 216 (551)
Q Consensus 174 ~~Cpic~~~~~-~Pv-------~~~cgh~~~~~ci~~~~~~~--~~~CP~c~~ 216 (551)
-.|.||++.-. .|. ...|.|.||-.||..|.... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 56999987443 222 23799999999999999853 346776654
No 353
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.68 E-value=37 Score=40.59 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=77.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhHHh
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAI 386 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i 386 (551)
+.+..++..|..+...+|..|+.+|.++..-+.. ......+-..+..-+.+.+..+|+.|+..++..... ++.-.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~-- 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF-- 891 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH--
Confidence 4677888889988999999999999999764321 122233344455556677788999999998854322 22222
Q ss_pred hhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHH
Q 008835 387 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARA 427 (551)
Q Consensus 387 ~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l 427 (551)
.+...+.+-..+....+++.+++.+..+|...++-..+
T Consensus 892 ---qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i 929 (1692)
T KOG1020|consen 892 ---QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI 929 (1692)
T ss_pred ---HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH
Confidence 23455666666667889999999999999866654433
No 354
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.64 E-value=8.9 Score=32.58 Aligned_cols=72 Identities=8% Similarity=0.225 Sum_probs=52.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHH-HHHHHHc-CcHHHHHHHhh-----hC---ChHHHHHHHHHHHHHH
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ-LKIAREL-DAEEALKELSE-----SG---TDRAKRKAGSILELLQ 542 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~-~~~~~~~-g~i~~L~~ll~-----~~---~~~~k~~A~~lL~~l~ 542 (551)
+...|.+-|+..++.+|..|..+|.++|..++.. +..+.+. ..|..+.++-. .| ...++.+|.+++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 4556777777888999999999999999877544 4444333 45666666654 33 3578999999999886
Q ss_pred hH
Q 008835 543 RI 544 (551)
Q Consensus 543 ~~ 544 (551)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 43
No 355
>PHA02862 5L protein; Provisional
Probab=73.43 E-value=3 Score=35.92 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=32.6
Q ss_pred ccccccccCcCCeeccCcc-----cccHHHHHHHHHh-CCCCCCCCcccccC
Q 008835 175 RCPISLELMKDPVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKTQQTLLH 220 (551)
Q Consensus 175 ~Cpic~~~~~~Pv~~~cgh-----~~~~~ci~~~~~~-~~~~CP~c~~~l~~ 220 (551)
.|=||.+--.+. .-||.. --.+.|+++|+.. +...||.|+.+...
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 578888765443 456653 3478999999984 56789999988754
No 356
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.91 E-value=13 Score=33.56 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=69.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhc--CCcHHHHHHHhcCC-HHHHHHHHHHHHHhcCC----cc
Q 008835 309 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNA--GAIPDIVDVLKNGS-MEARENAAATLFSLSVI----DE 381 (551)
Q Consensus 309 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~--g~i~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~~----~~ 381 (551)
.+..+..+|+++++..+..++..+.-+..+.. .+.+... -.+..++.+|++.+ ..+.+.++.+|..|-.. ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34567788899888888888877776654322 3444333 35788999998764 56677777777665422 33
Q ss_pred hhHHhhhh---CcHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 382 NKVAIGAA---GAIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 382 ~~~~i~~~---~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
....+... ++++.++.+++. ......++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 33333322 566677777664 4566677777777654
No 357
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.70 E-value=3.5 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.737 Sum_probs=23.7
Q ss_pred CcccccccccC--cCCeec--cCcccccHHHHH
Q 008835 173 DFRCPISLELM--KDPVIV--STGQTYERSCIQ 201 (551)
Q Consensus 173 ~~~Cpic~~~~--~~Pv~~--~cgh~~~~~ci~ 201 (551)
.-.|++|.+.+ .|.++. .||-.|.|.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 45799999999 677764 799999999943
No 358
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.67 E-value=25 Score=30.41 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=56.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhhC-C-hHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESG-T-DRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~-~-~~~k~~A~~lL~~l~~ 543 (551)
++..|-+-|.++++.++..|+.+|-.+..+. ......+...+++..|..++... + +.++.++..++..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 5667888888999999999999999988874 55667778888999999988765 3 3388888888876654
No 359
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.08 E-value=8.1 Score=35.79 Aligned_cols=44 Identities=14% Similarity=0.339 Sum_probs=34.9
Q ss_pred ccccccccCc--CCeeccCcccccHHHHHHHHHh-------CCCCCCCCcccc
Q 008835 175 RCPISLELMK--DPVIVSTGQTYERSCIQKWLDA-------GHKTCPKTQQTL 218 (551)
Q Consensus 175 ~Cpic~~~~~--~Pv~~~cgh~~~~~ci~~~~~~-------~~~~CP~c~~~l 218 (551)
.|.+|...+. |.+-+-|-|.|...|+.+|-.. ....||.|.+++
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 4888887664 6667899999999999999874 234699998764
No 360
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=69.89 E-value=2.9 Score=42.38 Aligned_cols=29 Identities=21% Similarity=0.610 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHh------------CCCCCCCCcccccCCC
Q 008835 194 TYERSCIQKWLDA------------GHKTCPKTQQTLLHTA 222 (551)
Q Consensus 194 ~~~~~ci~~~~~~------------~~~~CP~c~~~l~~~~ 222 (551)
..|..|+-+||.. |.-+||+||.++.-.+
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3477899999974 3457999999886544
No 361
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.80 E-value=53 Score=35.44 Aligned_cols=111 Identities=20% Similarity=0.188 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
.+.+.-+++.+.+.+..++..++..|+.++. +-.-.....-+|.+..|.+-+-+..+.++..|+.+|..+-..+.+-+.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 3667777788888888999999999998874 332233444567788888877788899999999999987544333221
Q ss_pred HhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchh
Q 008835 345 IVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENK 383 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~ 383 (551)
.....|+.+++++ +.+++..| |.|++.+....
T Consensus 169 ----~~~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~ 201 (885)
T COG5218 169 ----RIVNLLKDIVQNDPSDEVRRLA---LLNISVDNSTY 201 (885)
T ss_pred ----HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcc
Confidence 1234566666654 67887744 55665554433
No 362
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=69.61 E-value=1.1e+02 Score=29.27 Aligned_cols=128 Identities=11% Similarity=0.107 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCCh------------------hhHHHHHHHHHHHhcChhhH
Q 008835 404 PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG------------------GMVDEALAILAILASHQEGK 465 (551)
Q Consensus 404 ~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~------------------~~~~~al~~L~nL~~~~~~~ 465 (551)
......++..+..|...+++...+...+.++.+.+.|...++ .+...=...|+.++.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 445566777888888888877777788888888888765311 11223356788999999999
Q ss_pred HHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH-HHHhhhCChHHHHHHHHHHHHHH
Q 008835 466 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEAL-KELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 466 ~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
..+-+.+.+..+..+....+. .....-+|.+|=-.. .|-...+ -..+.+++..+|..|...|+.+-
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 999999999999999987543 112222333332111 2333433 45678899999999999988764
No 363
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.23 E-value=3.9 Score=45.63 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=28.5
Q ss_pred CCCCCcccccccccC-cCCee-ccCcccccHHHHHHHHH
Q 008835 169 VIPDDFRCPISLELM-KDPVI-VSTGQTYERSCIQKWLD 205 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~-~~Pv~-~~cgh~~~~~ci~~~~~ 205 (551)
.+...-.|-+|...+ ..|.. .+|||.|.+.|+.+...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 344556799998644 56764 69999999999998765
No 364
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=69.19 E-value=1.8e+02 Score=32.26 Aligned_cols=129 Identities=21% Similarity=0.173 Sum_probs=73.9
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHhcccC---C-------CchHHHhhcCCcHHHHHHHh----cCCHHHHHHHHH
Q 008835 310 IPLLVELLSS----TDPRTQEHAVTALLNLSIN---D-------SNKGTIVNAGAIPDIVDVLK----NGSMEARENAAA 371 (551)
Q Consensus 310 i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~---~-------~~~~~i~~~g~i~~Lv~~L~----~~~~~~~~~aa~ 371 (551)
+..+..++.+ .++.++..|+-+++.|... . ...........++.+...|. .++.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 3445555554 3566777788777777531 1 11122223445666666665 346677888899
Q ss_pred HHHHhcCCcchhHHhhhhCcHHHHHHHhccC---ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccC--Chh
Q 008835 372 TLFSLSVIDENKVAIGAAGAIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA--GGG 446 (551)
Q Consensus 372 ~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~ 446 (551)
+|+|+... ..++.|...+... +..++..|+++|..+....... +.+.|++++.+. +.+
T Consensus 513 aLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 513 ALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HH
T ss_pred HhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChh
Confidence 99998542 3678888887765 5678889999998875543322 345577777663 444
Q ss_pred hHHHHHHHH
Q 008835 447 MVDEALAIL 455 (551)
Q Consensus 447 ~~~~al~~L 455 (551)
++-.|..+|
T Consensus 576 vRiaA~~~l 584 (618)
T PF01347_consen 576 VRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554333
No 365
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.18 E-value=1.3e+02 Score=30.34 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=109.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhccc-CC-CchHHHh-hcC-CcHHHHHHHhcC-----C--------HHHHHHHHHH
Q 008835 310 IPLLVELLSSTDPRTQEHAVTALLNLSI-ND-SNKGTIV-NAG-AIPDIVDVLKNG-----S--------MEARENAAAT 372 (551)
Q Consensus 310 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~-~~~~~i~-~~g-~i~~Lv~~L~~~-----~--------~~~~~~aa~~ 372 (551)
++.+.+.|.+....+...++..|..+.. +. .....+. .-+ -.+.+.+++... . +.+|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888998888888899999999987 43 2233343 222 345666666321 1 1677777776
Q ss_pred HHHhcCCc--chhHHhh-hhCcHHHHHHHhccCChhHHHHHHHHHHH-hccCC----ChHHHHHHcCChHHHHHhhccCC
Q 008835 373 LFSLSVID--ENKVAIG-AAGAIPALIRLLCDGTPRGKKDAATAIFN-LSIYQ----GNKARAVRAGIVPPLMRFLKDAG 444 (551)
Q Consensus 373 L~~Ls~~~--~~~~~i~-~~~~i~~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~----~~~~~l~~~g~i~~Lv~lL~~~~ 444 (551)
+..+.... ..+..+. ..+.+..+++-|..++.++....+.+|.. +..++ ..+..+....++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 66655433 3444444 45788999999999888999999999884 54443 23455777888999999887766
Q ss_pred h----hhHHHHHHHHHHHhcChhh
Q 008835 445 G----GMVDEALAILAILASHQEG 464 (551)
Q Consensus 445 ~----~~~~~al~~L~nL~~~~~~ 464 (551)
+ .+.+.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 8889999999999987654
No 366
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.13 E-value=2.6 Score=40.54 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=23.2
Q ss_pred ccccHHHHHHHHHh------------CCCCCCCCcccccCCC
Q 008835 193 QTYERSCIQKWLDA------------GHKTCPKTQQTLLHTA 222 (551)
Q Consensus 193 h~~~~~ci~~~~~~------------~~~~CP~c~~~l~~~~ 222 (551)
-..|++|+-+||.. |.-+||+||+.+.-.+
T Consensus 327 p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 327 PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 35788999999963 5678999998876544
No 367
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.97 E-value=40 Score=36.36 Aligned_cols=101 Identities=21% Similarity=0.170 Sum_probs=71.6
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--HHHH
Q 008835 430 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD--AEQL 507 (551)
Q Consensus 430 ~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~--~~~~ 507 (551)
.|.+..++.-+.+++..++..++.+|+.++..-.-.....-.|.+..|.+-+-+..+.+|..|+.+|..+-..+ +++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 45666777777778889999999999999887655556666677788877777777889999999998775422 222
Q ss_pred HHHHHcCcHHHHHHHhhhC-ChHHHHHHHHH
Q 008835 508 KIARELDAEEALKELSESG-TDRAKRKAGSI 537 (551)
Q Consensus 508 ~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~l 537 (551)
.+...|..+++++ +.++++.|..-
T Consensus 169 ------~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 169 ------RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ------HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2344566666665 56777766543
No 368
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=68.91 E-value=38 Score=27.53 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=54.7
Q ss_pred hhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHH
Q 008835 388 AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILA 456 (551)
Q Consensus 388 ~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~ 456 (551)
....+..|+..++..+......++..|..|..++.....+.+-|++.-|.++=...++..+...-.++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 347788888888888877888999999999999999999999999998777766566666555555543
No 369
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=68.85 E-value=2.2 Score=30.49 Aligned_cols=38 Identities=18% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCcccccccccCcCCeeccCcccccHHHHHHHHHh-CCCCCCCCcc
Q 008835 172 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-GHKTCPKTQQ 216 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~-~~~~CP~c~~ 216 (551)
+.|.||.|.+.+... .+..-+.+..... ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 479999999843321 2334444444332 3467999975
No 370
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=68.55 E-value=1.2e+02 Score=29.58 Aligned_cols=213 Identities=17% Similarity=0.162 Sum_probs=119.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhh----ChhhHHHHHh------c-CCHHHHHHhhcCC--CHHHHHHHHHHHHhcccC
Q 008835 272 LGKLANGNVEEQRAAAGELRLLAKR----NADNRVCIAE------A-GAIPLLVELLSST--DPRTQEHAVTALLNLSIN 338 (551)
Q Consensus 272 v~~L~s~~~~~~~~a~~~L~~L~~~----~~~~r~~i~~------~-g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~ 338 (551)
+..|.+....+-..|+..|..+... ++..+..+.+ . |..+-+..++-.+ .+...+.++..|..|...
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPL 92 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcC
Confidence 4455555555555566555554322 2223333221 2 4555555555443 445667777777777643
Q ss_pred CC--------chHHHhhcCCcHHHHHHHhcCC----HHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCC---
Q 008835 339 DS--------NKGTIVNAGAIPDIVDVLKNGS----MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT--- 403 (551)
Q Consensus 339 ~~--------~~~~i~~~g~i~~Lv~~L~~~~----~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~--- 403 (551)
+. +|-.+.--+.+|.++.-+.+++ ......+|..|..++.... ...+..++.....+.
T Consensus 93 ~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~fr~ 165 (262)
T PF14225_consen 93 PDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGRFRD 165 (262)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcCCCC
Confidence 22 2322323445677777777666 1334456677777763221 233444444444433
Q ss_pred -hhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHh
Q 008835 404 -PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR 482 (551)
Q Consensus 404 -~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~ 482 (551)
.+....++..|++-.. ++ .+...+..|+.+|.++.+.++...+.+|..+-.+.+.+.. ...+.+.+++++|+
T Consensus 166 ~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~ 238 (262)
T PF14225_consen 166 KDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQ 238 (262)
T ss_pred HHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhC
Confidence 2333444444443221 11 1234566789999888899999999999999887655544 33457999999998
Q ss_pred cCCHHHHHHHHHHHHHHhc
Q 008835 483 TGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 483 ~~~~~~k~~A~~~L~~L~~ 501 (551)
++- -..|..+|-++..
T Consensus 239 t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 239 TDL---WMEALEVLDEIVT 254 (262)
T ss_pred Ccc---HHHHHHHHHHHHh
Confidence 665 3356666655443
No 371
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.51 E-value=23 Score=31.92 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=66.0
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh--CcHHHHHHHhccCC-hhHHHHHHHHHHHhccCCChHHH
Q 008835 350 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGT-PRGKKDAATAIFNLSIYQGNKAR 426 (551)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--~~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~~~~~~~ 426 (551)
.+..+..+|++.+++.+-.++..+.-+....+. ..+.+. ..+..++.+|+..+ ..+++.++.+|..|...-.+...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 456677888888888887777777666554332 333232 67888888888754 46677777777777543333332
Q ss_pred ----HHH---cCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 008835 427 ----AVR---AGIVPPLMRFLKDAGGGMVDEALAILAILAS 460 (551)
Q Consensus 427 ----l~~---~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~ 460 (551)
+.- .++++.+++++.+ ....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 322 2334555555543 4556677777766654
No 372
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.48 E-value=3.6 Score=42.62 Aligned_cols=49 Identities=16% Similarity=0.434 Sum_probs=33.1
Q ss_pred Cccccccc-ccCcCCe---eccCcccccHHHHHHHHHh-----CCCCCCC--CcccccCC
Q 008835 173 DFRCPISL-ELMKDPV---IVSTGQTYERSCIQKWLDA-----GHKTCPK--TQQTLLHT 221 (551)
Q Consensus 173 ~~~Cpic~-~~~~~Pv---~~~cgh~~~~~ci~~~~~~-----~~~~CP~--c~~~l~~~ 221 (551)
...|+||. +.+...- +..|||-||..|..+++.. ....||- |...++..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~ 205 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLE 205 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHH
Confidence 46799999 4433212 4679999999999999873 2346765 55555543
No 373
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=68.28 E-value=33 Score=29.97 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=58.1
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhh------CChHHHHHHHHHHHHHHh
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 543 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~------~~~~~k~~A~~lL~~l~~ 543 (551)
.++..+.+-|.++++.++..|+.+|-.+..+- ......+...+++.-|+.++.. .+..++.+...+++.-.+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 35777888889999999999999998888765 4456777788899999999853 367899999988887664
No 374
>PRK14707 hypothetical protein; Provisional
Probab=68.03 E-value=3.4e+02 Score=34.54 Aligned_cols=255 Identities=16% Similarity=0.103 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHh-cccCCCchHHHhhcCCcHHHHH
Q 008835 279 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLN-LSINDSNKGTIVNAGAIPDIVD 356 (551)
Q Consensus 279 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~n-Ls~~~~~~~~i~~~g~i~~Lv~ 356 (551)
+.+.+..+......++. .+..+..+ ...+|..+++-++. ++...-.+|+..|.. |+.++..+..+ +.-.+...+.
T Consensus 178 ~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN 254 (2710)
T PRK14707 178 NPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALN 254 (2710)
T ss_pred CchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHH
Confidence 34444433333344443 33344333 33455666666654 443344445555544 44443333333 4444555555
Q ss_pred HHhcC-CH-HHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc-CChhHHHHHHHHHH-HhccCCChHHHHHHcCC
Q 008835 357 VLKNG-SM-EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIF-NLSIYQGNKARAVRAGI 432 (551)
Q Consensus 357 ~L~~~-~~-~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~-nL~~~~~~~~~l~~~g~ 432 (551)
.|..- +. .....+.++-..|+....-+..+...+ +...++-|+. .+..+-..|+..|. .|..+++-+ .-.+.-.
T Consensus 255 ~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~-~~~~~~~ 332 (2710)
T PRK14707 255 ALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELC-KALNARG 332 (2710)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhh-hccchHH
Confidence 55443 33 333333344445654444444443333 2333333333 44455444544444 455544333 3344445
Q ss_pred hHHHHHhhcc-CC-hhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHH
Q 008835 433 VPPLMRFLKD-AG-GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKI 509 (551)
Q Consensus 433 i~~Lv~lL~~-~~-~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~ 509 (551)
+...++-|+. ++ ......|..+-..|+.+++-+..+--. ++..++.-|.- +....-..|+..|..=..++++....
T Consensus 333 ~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~ 411 (2710)
T PRK14707 333 LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKG 411 (2710)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhh
Confidence 5566666654 44 444555555566788888777766533 45555555542 33333334444444433356666666
Q ss_pred HHHcCcHHHHHHHhhhCChHHHHHHHHHHH
Q 008835 510 ARELDAEEALKELSESGTDRAKRKAGSILE 539 (551)
Q Consensus 510 ~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 539 (551)
+--.|+-..|--+.+=.+..+...|...|-
T Consensus 412 ~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 412 LDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred cchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 666676666666776667777766666553
No 375
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=67.38 E-value=3.5 Score=30.28 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=9.6
Q ss_pred cccHHHHHHHHHh
Q 008835 194 TYERSCIQKWLDA 206 (551)
Q Consensus 194 ~~~~~ci~~~~~~ 206 (551)
-|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999985
No 376
>PF14353 CpXC: CpXC protein
Probab=67.31 E-value=3.3 Score=35.53 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=30.1
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHh--CCCCCCCCccccc
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~--~~~~CP~c~~~l~ 219 (551)
+.+||-|+..+.-.+-..-.-.....-.++-++. ...+||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3589999998876664433333444555555542 2358999998765
No 377
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=66.90 E-value=25 Score=30.64 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=57.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhhC-ChH---HHHHHHHHHHHHHhHH
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESG-TDR---AKRKAGSILELLQRID 545 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~---~k~~A~~lL~~l~~~~ 545 (551)
++..|-+-|.++++.++..|+.+|-.+..+.+ .....+....++..|..++.+. +.. +++++..+|.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 56678888889999999999999999988774 5556666778999999988765 433 7899888887765543
No 378
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.37 E-value=2.7e+02 Score=32.71 Aligned_cols=81 Identities=23% Similarity=0.194 Sum_probs=67.7
Q ss_pred hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 008835 423 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIR---TGSPRNRENAAAVLWA 498 (551)
Q Consensus 423 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~---~~~~~~k~~A~~~L~~ 498 (551)
.+.++..+|++..|+..+-...+.++-.-+..+..+++ ++.+.......|++..|++++. +|+...-.+|.+++..
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 45678899999999999988889999999999999988 5778888888899999999885 4666677788888888
Q ss_pred HhcCC
Q 008835 499 ICTGD 503 (551)
Q Consensus 499 L~~~~ 503 (551)
||...
T Consensus 980 Lgayr 984 (2799)
T KOG1788|consen 980 LGAYR 984 (2799)
T ss_pred Hhhcc
Confidence 87644
No 379
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.11 E-value=4.7 Score=39.78 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=37.7
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHh-CCCCCCCCcccc
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-GHKTCPKTQQTL 218 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~-~~~~CP~c~~~l 218 (551)
.+.-.|-||-+-++-...+||||..|..|-.+.-.- ....||.|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 456789999998887778999999999997664432 457899998543
No 380
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=65.97 E-value=19 Score=31.38 Aligned_cols=73 Identities=25% Similarity=0.201 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHhcCCHHHHHHhhcCC-CHH---HHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSST-DPR---TQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~-~~~---~~~~a~~~L~nLs~ 337 (551)
..++..|...|.++++.+|..|+..|-.+.++. +.....+....++..|.+++.+. ... +++.++..+...+.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999876 45667777778899999988754 333 78888888876653
No 381
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=65.93 E-value=18 Score=33.06 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=31.9
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCC-ccchhhHHHHHHHHHh
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL-TPNYVLKSLIALWCEN 239 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~-~~n~~l~~~i~~~~~~ 239 (551)
+..|.||-|..-+. |. ..+. ..+.||.|+.++...+- .--..++..|..+-..
T Consensus 115 ~~~Y~Cp~C~~ryt----------f~-----eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIRFT----------FD-----EAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcEEe----------HH-----HHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 57899998874432 21 1222 47999999999865321 1224556666655444
No 382
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=65.15 E-value=1.3e+02 Score=28.72 Aligned_cols=135 Identities=19% Similarity=0.084 Sum_probs=82.1
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhc
Q 008835 270 ALLGKL-ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNA 348 (551)
Q Consensus 270 ~Lv~~L-~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~ 348 (551)
.|+..+ +..++..+...++.|..++.++..+.. -++..|..+...+....+..+...+..+-..++ +..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f---- 73 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF---- 73 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----
Confidence 344433 356788899999999999976522222 234566666666666665566666665543221 110
Q ss_pred CCcHHHHHH--Hh------cC--CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHh-ccCChhHHHHHHHHHHHh
Q 008835 349 GAIPDIVDV--LK------NG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 349 g~i~~Lv~~--L~------~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~aL~nL 417 (551)
+.+..++.. ++ ++ ..+.....+..+..++...++ -....++.+...| +..++..+..++.+|..|
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 334433333 11 11 244555556777777766544 2235778888888 677788888999999999
Q ss_pred c
Q 008835 418 S 418 (551)
Q Consensus 418 ~ 418 (551)
|
T Consensus 150 c 150 (234)
T PF12530_consen 150 C 150 (234)
T ss_pred H
Confidence 8
No 383
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=64.29 E-value=6.5 Score=43.16 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=35.9
Q ss_pred CCCCCCcccccccccCcCCee----cc---CcccccHHHHHHHHHh-----CCCCCCCCc
Q 008835 168 PVIPDDFRCPISLELMKDPVI----VS---TGQTYERSCIQKWLDA-----GHKTCPKTQ 215 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~----~~---cgh~~~~~ci~~~~~~-----~~~~CP~c~ 215 (551)
...++.-.|++|..-+.+|+- .+ |+|.+|-.||..|.+. .+..|+.|.
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 355677789999988888662 34 9999999999999984 233456664
No 384
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.50 E-value=18 Score=38.66 Aligned_cols=67 Identities=18% Similarity=0.352 Sum_probs=50.5
Q ss_pred cCChHHHHHh-hccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCH
Q 008835 430 AGIVPPLMRF-LKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-TGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 430 ~g~i~~Lv~l-L~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~-~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.|+|..|++. .++.+++++..|+-+|.-+|.. +...++..+++|. +.++.+|...+-+|.--|.+..
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec--------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 4678888887 6778899999999888877764 2356777778775 4568888877778877777664
No 385
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=61.74 E-value=2.7e+02 Score=31.26 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=80.7
Q ss_pred cCCHHHHHHhhcC--------CCHHHHHHHHHHHHhccc--CCC-chHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 307 AGAIPLLVELLSS--------TDPRTQEHAVTALLNLSI--NDS-NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS 375 (551)
Q Consensus 307 ~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~nLs~--~~~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~ 375 (551)
.|.++.++..|.. +++.-.+.|++.+.++.. ... .-..+++.=.++.++-.+++...-++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4889999999932 234455677777777654 221 12233344456667777788878888899999988
Q ss_pred hcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHH
Q 008835 376 LSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR 429 (551)
Q Consensus 376 Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~ 429 (551)
++.+ .+..-....+.....+.+++.+-.++..|+-||.-+-.+......+..
T Consensus 487 ~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 487 IEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 8443 333333345677777888887788889999999888777655544443
No 386
>PLN02189 cellulose synthase
Probab=61.62 E-value=6.3 Score=45.26 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=36.7
Q ss_pred CcccccccccC-----cCCeec--cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 173 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~-----~~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34899999754 345543 588889999998767789999999987765
No 387
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=61.55 E-value=55 Score=35.02 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=73.3
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH----HHhhhCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCC-
Q 008835 430 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK----TAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGD- 503 (551)
Q Consensus 430 ~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~----~~i~~~~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~- 503 (551)
.++|+.+++.+. .+.+.+.-+.++. +..++.. +.+.+.+.|+.|+.+|.. .++..+.+|+.+|..+..-+
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 466777777774 3444555555544 3333333 344567999999999974 45778899998887765421
Q ss_pred ------------HHHHHHHHHcCcHHHHHHHhh--hCChHHHHHHHHHHHHHHhH
Q 008835 504 ------------AEQLKIARELDAEEALKELSE--SGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 504 ------------~~~~~~~~~~g~i~~L~~ll~--~~~~~~k~~A~~lL~~l~~~ 544 (551)
......+.....+..|+..+- .+...+.....-++..+++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 234566777788999988766 45555666666778888654
No 388
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=60.82 E-value=24 Score=32.08 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCc-cchhhHHHHHHHH
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT-PNYVLKSLIALWC 237 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~-~n~~l~~~i~~~~ 237 (551)
+..|.||.|.--+. | ..-+.. .++||.|+..+...+-. ....+...+...-
T Consensus 111 ~~~y~C~~~~~r~s----------f-----deA~~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~ 162 (176)
T COG1675 111 NNYYVCPNCHVKYS----------F-----DEAMEL-GFTCPKCGEDLEEYDSSEEIEELESELDELE 162 (176)
T ss_pred CCceeCCCCCCccc----------H-----HHHHHh-CCCCCCCCchhhhccchHHHHHHHHHHHHHH
Confidence 56789998765443 3 333343 48999999998754432 3344555555543
No 389
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=60.73 E-value=78 Score=31.24 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=49.5
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH--HHHHcCChHHHHH----hhc--------cCChhhHHHHHHHH
Q 008835 390 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA--RAVRAGIVPPLMR----FLK--------DAGGGMVDEALAIL 455 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~--~l~~~g~i~~Lv~----lL~--------~~~~~~~~~al~~L 455 (551)
-++|+++.++++.++..+..++.+|..+...-.... .+.+.|..+.+-+ ++. +.+..+...|..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 578999999999999999999999999987544332 3556776554433 333 23345666777777
Q ss_pred HHHhc
Q 008835 456 AILAS 460 (551)
Q Consensus 456 ~nL~~ 460 (551)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77644
No 390
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=60.52 E-value=15 Score=32.88 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=23.3
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
+..|.||-|..-+. | ...+. .+++||.|+.++...
T Consensus 107 ~~~Y~Cp~c~~r~t----------f-----~eA~~-~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFICPNMCVRFT----------F-----NEAME-LNFTCPRCGAMLDYL 141 (158)
T ss_pred CCeEECCCCCcEee----------H-----HHHHH-cCCcCCCCCCEeeec
Confidence 57889998874332 2 22222 379999999988653
No 391
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=60.40 E-value=12 Score=30.93 Aligned_cols=43 Identities=26% Similarity=0.303 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 008835 283 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 326 (551)
Q Consensus 283 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~ 326 (551)
-...+..+..|+. .|+....+++.|+++.|+.+|.++|.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4567778888885 677788888999999999999999877643
No 392
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=60.32 E-value=10 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=20.9
Q ss_pred ccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 193 QTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 193 h~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
.|||..|.+..+ +..||.|+-.+...
T Consensus 29 CTFC~~C~e~~l---~~~CPNCgGelv~R 54 (57)
T PF06906_consen 29 CTFCADCAETML---NGVCPNCGGELVRR 54 (57)
T ss_pred CcccHHHHHHHh---cCcCcCCCCccccC
Confidence 489999999877 35799999877554
No 393
>PLN02436 cellulose synthase A
Probab=59.33 E-value=7.3 Score=44.87 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=37.1
Q ss_pred CCcccccccccC-----cCCeec--cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 172 DDFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 172 ~~~~Cpic~~~~-----~~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
..-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 344899998754 345543 588889999997767789999999987765
No 394
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.66 E-value=1e+02 Score=37.22 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=61.5
Q ss_pred CCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc-CCChHHHH
Q 008835 349 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKARA 427 (551)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~l 427 (551)
+.+..++.+|..+...+|..|+.+|..+...+.. .+....+-..+-.-+.+....+++.|+-.++.... +++.-.+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3455566666666677777888888777665531 11112233334444555666777777777764332 22222222
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 428 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 428 ~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
-..+.+-+.++...++..++.++..+|..
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 12344445556677888899999988874
No 395
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=57.36 E-value=1.6e+02 Score=37.02 Aligned_cols=135 Identities=15% Similarity=0.094 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHhcccCCCchHHH----hhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHH
Q 008835 319 STDPRTQEHAVTALLNLSINDSNKGTI----VNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIP 393 (551)
Q Consensus 319 ~~~~~~~~~a~~~L~nLs~~~~~~~~i----~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~ 393 (551)
+++..+...|+..|..++..--.+..+ ....++.++..++.+. +.++++..+.++.++-.... ..| . .+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-k-SGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-K-SGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-h-cCcH
Confidence 446778888888888877521112221 2356788888887754 68999999999988754322 122 1 1345
Q ss_pred HHHHHhc----cCChhHHHHHHHHHHHhccCCChHHHHHH--cCC----hHHHHHhhcc-CChhhHHHHHHHHHHHh
Q 008835 394 ALIRLLC----DGTPRGKKDAATAIFNLSIYQGNKARAVR--AGI----VPPLMRFLKD-AGGGMVDEALAILAILA 459 (551)
Q Consensus 394 ~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~~~~~~l~~--~g~----i~~Lv~lL~~-~~~~~~~~al~~L~nL~ 459 (551)
.++.++. +.++.+...|..++..+.... -..+.. .+. |..|..+-.. .+.++--.|+..|++++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~--f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY--FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh--hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 5555544 445667777777776655321 111111 233 3344444433 24567777888888663
No 396
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.89 E-value=8.6 Score=34.26 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=31.4
Q ss_pred ccccccccCcCCee-------ccCcccccHHHHHHHHHh-----CC-----CCCCCCccccc
Q 008835 175 RCPISLELMKDPVI-------VSTGQTYERSCIQKWLDA-----GH-----KTCPKTQQTLL 219 (551)
Q Consensus 175 ~Cpic~~~~~~Pv~-------~~cgh~~~~~ci~~~~~~-----~~-----~~CP~c~~~l~ 219 (551)
-|-||.-+--|-.+ ..||+.|..-|+..|+.. .. ..||.|..++.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 47777554333221 579999999999999984 11 25999988764
No 397
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=56.84 E-value=6.9 Score=36.03 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=37.2
Q ss_pred CCcccccccccCcCCe-eccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 172 DDFRCPISLELMKDPV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv-~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
+-..|.+|..+.---+ -=+||-.|.+.|++.++.+ ...||.|+.-.++.
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h~ 229 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTHP 229 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCcc
Confidence 3457999999875543 2467778999999999987 67799998655543
No 398
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=56.80 E-value=66 Score=31.79 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=62.6
Q ss_pred CCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhH--HhhhhCcHHHHHHH----hc--------cCChhHHHHHHHHH
Q 008835 349 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV--AIGAAGAIPALIRL----LC--------DGTPRGKKDAATAI 414 (551)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~--~i~~~~~i~~Lv~l----L~--------~~~~~~~~~a~~aL 414 (551)
-++|+++.++++.+++.+..++.+|..+...-.... .+...|..+.+-+. |. +.+......|..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468999999999999999999999998865432222 24444544444433 33 23345566666677
Q ss_pred HHhccC-----CCh----HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 008835 415 FNLSIY-----QGN----KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 460 (551)
Q Consensus 415 ~nL~~~-----~~~----~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~ 460 (551)
..|+.. ... ...++..|++..+...-......++...+..+..+..
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 666331 111 2234444444443332222235555555555544443
No 399
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.72 E-value=7.4 Score=42.58 Aligned_cols=44 Identities=23% Similarity=0.545 Sum_probs=31.7
Q ss_pred CCcccccccccCcCCee--ccCcccccHHHHHHHHHhCCCCCCC-Ccc
Q 008835 172 DDFRCPISLELMKDPVI--VSTGQTYERSCIQKWLDAGHKTCPK-TQQ 216 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~--~~cgh~~~~~ci~~~~~~~~~~CP~-c~~ 216 (551)
..|.|.+|.--.+---. ..|||.....|...||..|. .||. |+-
T Consensus 1027 ~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC 1073 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGC 1073 (1081)
T ss_pred ceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCc
Confidence 34668887654443322 57999999999999999755 6987 553
No 400
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=55.72 E-value=1.9e+02 Score=27.54 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCC-------------H-HHHHHH----HHHHHHhcCCcchh
Q 008835 322 PRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGS-------------M-EARENA----AATLFSLSVIDENK 383 (551)
Q Consensus 322 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~-------------~-~~~~~a----a~~L~~Ls~~~~~~ 383 (551)
......++..+..|...++.-..+...+.++.+.+.|..-+ + .+.... -..|+.||....+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 34445566666666666666556667778888877775421 1 112222 25677888888888
Q ss_pred HHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 008835 384 VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA 459 (551)
Q Consensus 384 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~ 459 (551)
..+-+.+++..+.+++...+. -.....+|.+|=...++..+.+ |-..|..++..++..|...|..+.
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~i-------LsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRII-------LSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHHH-------HHHHHhcCCHHHHHHHHHHHHHHh
Confidence 888888999999999877533 2222336667766555555544 566788888899999988887764
No 401
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=55.59 E-value=12 Score=36.30 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=34.3
Q ss_pred CcccccccccCc-CC-e-eccCcccccHHHHHHHHHh----------------------CCCCCCCCcccccC
Q 008835 173 DFRCPISLELMK-DP-V-IVSTGQTYERSCIQKWLDA----------------------GHKTCPKTQQTLLH 220 (551)
Q Consensus 173 ~~~Cpic~~~~~-~P-v-~~~cgh~~~~~ci~~~~~~----------------------~~~~CP~c~~~l~~ 220 (551)
.-.|.||+.=|. .| + .++|-|-|...|+-+++.. ....||+|+.++..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 457999998775 45 3 3799998888888776642 12359999987754
No 402
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=55.49 E-value=0.54 Score=35.25 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=21.6
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
+..||.|...|. ..-|+.+|..|-..+.. ...||.|++++..
T Consensus 1 e~~CP~C~~~L~----~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELE----WQGGHYHCEACQKDYKK--EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEE----EETTEEEETTT--EEEE--EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccE----EeCCEEECcccccccee--cccCCCcccHHHH
Confidence 457999988754 22367788888543322 3569999988753
No 403
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=54.75 E-value=8.7 Score=44.36 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=36.4
Q ss_pred CcccccccccC-----cCCeec--cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 173 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~-----~~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34899998753 356553 688889999997666779999999987765
No 404
>PLN02195 cellulose synthase A
Probab=54.44 E-value=9.9 Score=43.49 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=36.3
Q ss_pred ccccccccc-----CcCCeec--cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 174 FRCPISLEL-----MKDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 174 ~~Cpic~~~-----~~~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
-.|.||++- +-+|.+. .||...||.|.+-=-++|+..||.|+.+..
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 369999873 3466653 688899999997666679999999988776
No 405
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=54.39 E-value=17 Score=30.07 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=20.0
Q ss_pred cccccHHHHHHHHHh--------CCCCCCCCcc
Q 008835 192 GQTYERSCIQKWLDA--------GHKTCPKTQQ 216 (551)
Q Consensus 192 gh~~~~~ci~~~~~~--------~~~~CP~c~~ 216 (551)
.-.||..|+..++.+ ++..||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 557999999888863 4678999986
No 406
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=53.82 E-value=7.9 Score=30.79 Aligned_cols=39 Identities=23% Similarity=0.531 Sum_probs=30.1
Q ss_pred CCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 172 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
..-.|-+|..-...| |+.||..|-.+ ...|.+|+..+..
T Consensus 43 ~~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~d 81 (90)
T PF10235_consen 43 YSSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILD 81 (90)
T ss_pred cCccccccccccccC-----CCccChhhhcc-----cCcccccCCeecc
Confidence 345899999887766 89999999442 4579999988743
No 407
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=53.49 E-value=90 Score=31.85 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=77.7
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccC-------ChhHHHHHHHHHHHhccCCCh
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-------TPRGKKDAATAIFNLSIYQGN 423 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~~~~~~ 423 (551)
+..+.+.+.+.+...+..| |..|..+..- ...+|.++.++.++ +.......+.++..|..++.-
T Consensus 180 f~~It~a~~~~~~~~r~~a---L~sL~tD~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 180 FEEITEALVGSNEEKRREA---LQSLRTDPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHhCCCHHHHHHH---HHHhccCCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 4445555555555555544 4444444321 24567777776543 345566677777888887776
Q ss_pred HHHHHHcCChHHHHHhhcc----------CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC-HH-HHHH
Q 008835 424 KARAVRAGIVPPLMRFLKD----------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PR-NREN 491 (551)
Q Consensus 424 ~~~l~~~g~i~~Lv~lL~~----------~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~-~~-~k~~ 491 (551)
.....-+-.++.++.++.. .+..+++.|..+|..++..-.....-+....+..+.+.+.+.. +. ..--
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 5554445578888877733 2246789999999999873211111112223335555554432 32 2444
Q ss_pred HHHHHHHHh
Q 008835 492 AAAVLWAIC 500 (551)
Q Consensus 492 A~~~L~~L~ 500 (551)
|+..|..|.
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 555555543
No 408
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=52.82 E-value=6.7 Score=24.77 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=8.2
Q ss_pred CCCCCCCCccc
Q 008835 207 GHKTCPKTQQT 217 (551)
Q Consensus 207 ~~~~CP~c~~~ 217 (551)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45689999864
No 409
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=52.69 E-value=1.6e+02 Score=27.05 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=75.5
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh-HHHh
Q 008835 390 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-KTAI 468 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~-~~~i 468 (551)
..++.++++.-+.+..++..|+..+.-+....=... .-++|.|+.+..++++.++..|...+..+...-++ -..=
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356777887778888889888888766543211111 12588999999999999999999999999874332 2111
Q ss_pred hhCCCHHHHHHHHhc--CCHH--H---HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhh
Q 008835 469 GQAEPIPVLMEVIRT--GSPR--N---RENAAAVLWAICTGDAEQLKIARELDAEEALKELSES 525 (551)
Q Consensus 469 ~~~~~v~~L~~lL~~--~~~~--~---k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 525 (551)
. ..++..-..+-+. ++.. . ...-..-|..++..+...+.. .+..|+..+..
T Consensus 84 ~-~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~ 141 (187)
T PF12830_consen 84 Y-SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDF 141 (187)
T ss_pred H-HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHh
Confidence 1 1234444444332 1111 1 344456667777655444443 34445554443
No 410
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.62 E-value=17 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhH
Q 008835 407 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMV 448 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 448 (551)
....+..+..|+..++--..+++.|+++.|+.+|.+.+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345677888999999887889999999999999998776654
No 411
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.61 E-value=9.7 Score=43.86 Aligned_cols=47 Identities=15% Similarity=0.364 Sum_probs=36.8
Q ss_pred CcccccccccC-----cCCeec--cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 173 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~-----~~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.-.|.||++-. -+|.+. .||...||.|.+-=.++|+..||.|+.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45799998753 356553 688889999997666779999999987765
No 412
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=52.55 E-value=1.9e+02 Score=26.54 Aligned_cols=73 Identities=21% Similarity=0.154 Sum_probs=55.2
Q ss_pred hCcHHHHHHHhccCChhHHHHHHHHHHHhccC-CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 389 AGAIPALIRLLCDGTPRGKKDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 389 ~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
...+|.+++=|.+.+...+..|...+..|... ...+..=+=...|.+|-..|...++++...++.+|..|+..
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 35778888888877777777788887777766 33333333356788888888889999999999999999664
No 413
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=52.49 E-value=5.8 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=19.7
Q ss_pred cCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 190 STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 190 ~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
...|-.|..|+..-+.. ...||.|+.+++..
T Consensus 18 C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSR-SDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SS-SSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhcc-ccCCCcccCcCccc
Confidence 44577799999988875 56699999988653
No 414
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=51.65 E-value=13 Score=41.56 Aligned_cols=46 Identities=30% Similarity=0.617 Sum_probs=36.3
Q ss_pred CCcccccccccCc--CCee--ccCcccccHHHHHHHHHh------CCCCCCCCccc
Q 008835 172 DDFRCPISLELMK--DPVI--VSTGQTYERSCIQKWLDA------GHKTCPKTQQT 217 (551)
Q Consensus 172 ~~~~Cpic~~~~~--~Pv~--~~cgh~~~~~ci~~~~~~------~~~~CP~c~~~ 217 (551)
..+.|-||.+.+. .||- -.|-|.|...||.+|-.. ..+.||.|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 5678999999885 5653 368899999999999874 34679999843
No 415
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=51.62 E-value=47 Score=30.56 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=52.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE-LDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
.++.++++..+.+..++..|+.++..+-..+ ++. ..++|.|+.|..+.++.++..|..+++.+.+-.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 4667777777888999999999988877665 111 126889999999999999999999999986543
No 416
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=51.03 E-value=19 Score=31.73 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHH-hCCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD-AGHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~-~~~~~CP~c~~~l~~ 220 (551)
...|.||-|...+. -.=.....+ .|.+.||.|+..+..
T Consensus 97 ~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEE
Confidence 56899997765443 111111111 245899999998854
No 417
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=50.76 E-value=2e+02 Score=26.36 Aligned_cols=112 Identities=16% Similarity=0.049 Sum_probs=65.5
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhh--hCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 008835 432 IVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG--QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKI 509 (551)
Q Consensus 432 ~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~--~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~ 509 (551)
.++.+.+=|...+....-.|...+..|... .+...++ -...+..+-.-|.+.++++...++.+|..|+..++..-.+
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 345555555555555566666666666555 2333333 2356677777778889999999999999997766544444
Q ss_pred HHHc--CcHHHHHHHhh-----------hCChHHHHHHHHHHHHHHhH
Q 008835 510 AREL--DAEEALKELSE-----------SGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 510 ~~~~--g~i~~L~~ll~-----------~~~~~~k~~A~~lL~~l~~~ 544 (551)
++-. .+++.+-.+.. ......+......|+.|.++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~ 165 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERN 165 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHh
Confidence 4332 11222221111 12356667777777777653
No 418
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=50.54 E-value=3.4e+02 Score=28.94 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=59.0
Q ss_pred hHHHHHhhcc--CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC------CHHHHHHHHHHHHHHhcCCH
Q 008835 433 VPPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG------SPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 433 i~~Lv~lL~~--~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~------~~~~k~~A~~~L~~L~~~~~ 504 (551)
++.++..|-. ........+..++.||+.+.-+.. ++..|..+|.+. +..+-.-|+.+|..+..+.+
T Consensus 215 l~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 215 LSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred HHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc
Confidence 3345555543 333666778889999988665543 456777888322 23344567777777665542
Q ss_pred HHHHHHHHc---CcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 505 EQLKIAREL---DAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 505 ~~~~~~~~~---g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
+....-+.. -+++.|...++.+++++--....++..+
T Consensus 289 ~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 289 EQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred cCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 222222222 2677777777777666554444444433
No 419
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=49.96 E-value=17 Score=31.90 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChH
Q 008835 474 IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDR 529 (551)
Q Consensus 474 v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 529 (551)
|..|+++|.+.++.+...|+.+|.+...- .+.+..+..+... +.-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv----------yDaf~dv~~~ak~-N~~ 140 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLV----------YDAFNDVAELAKA-NAY 140 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TT----------CCHHHHHHHHHHT--HH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHH----------HhhHHHHHHHHHc-CHH
Confidence 78888888777777777888777663321 2235555566555 443
No 420
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=49.85 E-value=1.9e+02 Score=32.95 Aligned_cols=124 Identities=13% Similarity=0.092 Sum_probs=80.8
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHh
Q 008835 390 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAI 468 (551)
Q Consensus 390 ~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i 468 (551)
.....+...+..++.......+.++.+++.-..-...- ...-+++-..-....-..+.+....+|..++.. ++....+
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45556666677778888888888888887543211111 111222222223222345667788888999884 5555555
Q ss_pred h-hCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcC
Q 008835 469 G-QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD--AEQLKIARELD 514 (551)
Q Consensus 469 ~-~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~--~~~~~~~~~~g 514 (551)
. +.++...++.++-++++++.+.|..+|......+ .+....+.+..
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~ 568 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSN 568 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 5 4689999999999999999999999999987644 24445555443
No 421
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=49.33 E-value=1.3e+02 Score=30.99 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHhcccCCC---chHHHhhcCCcHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCcchhH
Q 008835 319 STDPRTQEHAVTALLNLSINDS---NKGTIVNAGAIPDIVDVLKN-----------GSMEARENAAATLFSLSVIDENKV 384 (551)
Q Consensus 319 ~~~~~~~~~a~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~~L~~-----------~~~~~~~~aa~~L~~Ls~~~~~~~ 384 (551)
..+..-+..|-..|.+.-...+ ....+ ..-++.+++.++. .+.++...|+.+|..+-.......
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l--~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQAL--QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 3455666677766666543222 22222 2234555555432 145677888899988877665555
Q ss_pred Hhhhh---CcHHHHHHHhccC--ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc-----CChhhHHHHHHH
Q 008835 385 AIGAA---GAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAI 454 (551)
Q Consensus 385 ~i~~~---~~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~al~~ 454 (551)
.+... -.+...+..+.++ +..+....+++|..=-. ...++....+..++..+.. ++..+....+.+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f----~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF----SPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----CCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 44443 1445555555443 23444455555543222 2224444455555555433 456778889999
Q ss_pred HHHHhcChhhHHHhhhC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 455 LAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 455 L~nL~~~~~~~~~i~~~--~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
+.+|...... .|.+. .-++.++..+-+....++..|..++..+.
T Consensus 158 ~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 158 YKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 9988875322 23322 24667777666666666766666655543
No 422
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=48.86 E-value=78 Score=32.54 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=58.5
Q ss_pred HHHHHHHhcc-CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc-CChhhHHH-HHHHHHHHhcChhhHHHh
Q 008835 392 IPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDE-ALAILAILASHQEGKTAI 468 (551)
Q Consensus 392 i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~-al~~L~nL~~~~~~~~~i 468 (551)
+..+++-+.. .+..++..++--|+.-+.++..+.++..+|.+..+++.+.+ ++...... ++.++..++.....-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 4555555553 34578889999999999999999999999999999999965 33323333 344445555544333333
Q ss_pred hhCCCHHHHHHHHh
Q 008835 469 GQAEPIPVLMEVIR 482 (551)
Q Consensus 469 ~~~~~v~~L~~lL~ 482 (551)
.+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 33344444455554
No 423
>PRK12495 hypothetical protein; Provisional
Probab=48.20 E-value=17 Score=33.90 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHh
Q 008835 111 KNESLAFHELVISSGGDPGDCFEEISSLLRKL 142 (551)
Q Consensus 111 ~~E~~~l~~~~~~~~~~~~~~~~~l~~ll~~~ 142 (551)
..|.+.|++..+... +.-+..+.|..||.+.
T Consensus 7 EaEREkLREKye~d~-~~R~~~~~ma~lL~~g 37 (226)
T PRK12495 7 EAEREKLREKYEQDE-QKREATERMSELLLQG 37 (226)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhh
Confidence 456666666443311 1112456677776663
No 424
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=48.17 E-value=1.2e+02 Score=33.53 Aligned_cols=149 Identities=15% Similarity=0.063 Sum_probs=89.6
Q ss_pred hhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH
Q 008835 387 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 466 (551)
Q Consensus 387 ~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~ 466 (551)
...+++|.|++++...+..++..-+.-+-+... .--..+++..++|.+..-+.+.++.+++..+..+..|+..-..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 445789999999999887777654443333221 12335788889999999999999999999999998888742222
Q ss_pred HhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-cHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 467 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELD-AEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 467 ~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
......+..+.++--+....+|.+..-+|..+.... ...++.+ .+.....-+.+.-..+|.++...+....+
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l----~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL----AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeeccccccc----chhhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 111112222222222233567777766666666542 1122333 23344444555556666666666655443
No 425
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.94 E-value=3.1e+02 Score=30.93 Aligned_cols=206 Identities=18% Similarity=0.143 Sum_probs=111.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC---CCchH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN---DSNKG 343 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~~~ 343 (551)
....+...++++....+..|.. .+..+++-+ ....+..|+.+.......-...++.+|..|-+. ++.+-
T Consensus 197 d~k~l~siiSsGT~~DkitA~~---LlvqesPvh-----~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKL 268 (988)
T KOG2038|consen 197 DAKWLYSIISSGTLTDKITAMT---LLVQESPVH-----NLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKL 268 (988)
T ss_pred hHHHHHHHHhcCcchhhhHHHH---Hhhcccchh-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhh
Confidence 4466677777776655555443 333334322 223456777777665444444555555544332 22111
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 423 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 423 (551)
..+....+..|. +....-+.-..|... ..-.+.-..+|..|..+-++.-..++..|+.++++|..+.+.
T Consensus 269 k~f~qrp~~~l~----~~~~~~k~Ll~WyfE-------~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE 337 (988)
T KOG2038|consen 269 KYFSQRPLLELT----NKRLRDKILLMWYFE-------HELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE 337 (988)
T ss_pred HHHhhChhhhcc----ccccccceehHHHHH-------HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH
Confidence 121111111110 000001111222211 111222235677777776666678999999999999887766
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh-cChhhHHHhhhCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHh
Q 008835 424 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAIC 500 (551)
Q Consensus 424 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~-~~~~~~~~i~~~~~v~~L~~lL~~~--~~~~k~~A~~~L~~L~ 500 (551)
..+.+ +..||+-|-++...+...|-..|.+|. .||..+..++ ..+..++-.+ +.+.+-+|+-.|..+.
T Consensus 338 qE~~L----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 338 QENNL----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVI-----DEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHHH----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehH-----HHHHHHHcccCccccceeehhhhhhhhH
Confidence 55433 566788888888888888888887764 4776665443 3344555443 3556667777776543
No 426
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.79 E-value=15 Score=36.92 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=33.1
Q ss_pred cccccccccCc---CCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 174 FRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 174 ~~Cpic~~~~~---~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
+.|.|+++.|. .|++.|.|++|-...|..|-...+-.||.++..+...
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 34555566664 3777888888888888888664447788887766543
No 427
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.20 E-value=9.9 Score=35.64 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=28.3
Q ss_pred cccccccCcCCeeccCcc-cccHHHHHHHHHhCCCCCCCCccccc
Q 008835 176 CPISLELMKDPVIVSTGQ-TYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 176 Cpic~~~~~~Pv~~~cgh-~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
|-.|.+--..=+.+||.| .+|..|=. +-.+||.|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~-----~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDE-----SLRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEecccccc-----cCccCCCCcChhh
Confidence 888887766644579998 67888822 2567999986543
No 428
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=47.12 E-value=7.3 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.691 Sum_probs=17.2
Q ss_pred cCcccccHHHHHHHHH----------hCCCCCCCCcccc
Q 008835 190 STGQTYERSCIQKWLD----------AGHKTCPKTQQTL 218 (551)
Q Consensus 190 ~cgh~~~~~ci~~~~~----------~~~~~CP~c~~~l 218 (551)
.+||.| +.||. .|-.+||.|+..-
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 478888 45775 3667999998653
No 429
>PRK14707 hypothetical protein; Provisional
Probab=47.12 E-value=7.4e+02 Score=31.85 Aligned_cols=272 Identities=14% Similarity=0.094 Sum_probs=133.6
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHH-hcccCCCch
Q 008835 266 AAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALL-NLSINDSNK 342 (551)
Q Consensus 266 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~-nLs~~~~~~ 342 (551)
..|..++.-++. ++......|+..|.....+...-+..+ +...|-..++-|+. ++...-.+|+.+|. .++.+...+
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~ 283 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLR 283 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHH
Confidence 445555555542 333334455666655443343333333 33445555565544 55555555555554 355444443
Q ss_pred HHHhhcCCcHHHHHHHhc-CCHHH-HHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc-CC-hhHHHHHHHHHHHhc
Q 008835 343 GTIVNAGAIPDIVDVLKN-GSMEA-RENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GT-PRGKKDAATAIFNLS 418 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~-~~~~~-~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~-~~-~~~~~~a~~aL~nL~ 418 (551)
..+ +.-.+...+.-|.. .+.++ +..|..+-..|..+.+-+..+-. ..+...++-|+. .+ ..+...|...-..|+
T Consensus 284 ~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~-~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 284 KAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNA-RGLSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred Hhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccch-HHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 333 22233334444443 23333 44444444556554443333322 334445555554 23 444554444444566
Q ss_pred cCCChHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHH-HHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 008835 419 IYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAIL-AILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 496 (551)
Q Consensus 419 ~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L-~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L 496 (551)
.+++-+..+- ..++...++-|+. ++...-..|...| ..|..+++-+..+-..|+-..|-.+-+=++..+-..|+..|
T Consensus 362 ~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 362 ADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred cCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 6655444433 4445555555544 5555444444444 46777777777766554444433333334444444555555
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHH-HHHHHH
Q 008835 497 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAG-SILELL 541 (551)
Q Consensus 497 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~-~lL~~l 541 (551)
..-...+.+.++.+--.++...|--+.+=.+.++...|. .+...|
T Consensus 441 A~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l 486 (2710)
T PRK14707 441 AGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARL 486 (2710)
T ss_pred HHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Confidence 544445556666555555666665666655555544333 344444
No 430
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=47.06 E-value=2.3e+02 Score=33.87 Aligned_cols=233 Identities=18% Similarity=0.104 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh--hHHHHHhcCCHHHHHHhh---------cC-CCHHHHHHHHHHH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD--NRVCIAEAGAIPLLVELL---------SS-TDPRTQEHAVTAL 332 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL---------~~-~~~~~~~~a~~~L 332 (551)
.+.++.|+..+-+..|+.|.-+...++.+.+.... ++.. .+.-++ .++..+ .. --..+++..+++|
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~-led~~~-rll~v~~Ldrf~dfisd~vvapVre~caq~L 153 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYEL-LEDLLI-RLLCVLALDRFGDFISDNVVAPVREACAQAL 153 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHH-HHHHHH-HHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 36788889999899999999888888887654322 1111 111111 111111 10 0134777788888
Q ss_pred HhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHH-hcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHH
Q 008835 333 LNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS-LSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAA 411 (551)
Q Consensus 333 ~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~-Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~ 411 (551)
..+..+..... -...++.+..+++...++++.-.+..+.+ ++...+. -...-..+++..+.-|.+.+..++..|+
T Consensus 154 ~~~l~~~~~s~---~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~-l~~~~~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 154 GAYLKHMDESL---IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDL-LFQLLNLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHHHhhhhHh---hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 77765422111 01235566666666655554333322221 1100000 0011124667777778888888888888
Q ss_pred HHHHHhccCCChHHHHHHcCChHHHHHhhccCCh--hhHHHHHHHHHHHhcChhhHHHh----hhCCCHHHHHHHHhcCC
Q 008835 412 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG--GMVDEALAILAILASHQEGKTAI----GQAEPIPVLMEVIRTGS 485 (551)
Q Consensus 412 ~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~--~~~~~al~~L~nL~~~~~~~~~i----~~~~~v~~L~~lL~~~~ 485 (551)
.+|.-......+...---..++..+..++..-+. .-.......+..++...+..... ...|.+|.+..++++.-
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 8877665533111111112234444444433221 11222334445555555332211 12488999999998877
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 008835 486 PRNRENAAAVLWAICTGD 503 (551)
Q Consensus 486 ~~~k~~A~~~L~~L~~~~ 503 (551)
..++..+...+..+....
T Consensus 310 ~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 778888888888877644
No 431
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.70 E-value=16 Score=38.71 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=30.7
Q ss_pred CCCCcccccccccCcC-CeeccCcccccHHHHHHHHHh
Q 008835 170 IPDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLDA 206 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~~~ 206 (551)
......|.||.+-... .+.+.|||.||..|...++..
T Consensus 67 ~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 3566889999988875 556799999999999998874
No 432
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.38 E-value=12 Score=36.11 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCCcccccccccCcCCeeccC----cccccHHHHHHHHHh
Q 008835 171 PDDFRCPISLELMKDPVIVST----GQTYERSCIQKWLDA 206 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~c----gh~~~~~ci~~~~~~ 206 (551)
...++|-+|.+-+.|.-++.| +|.||.-|-.+.++.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 345899999999999877654 599999998887774
No 433
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=45.73 E-value=9 Score=37.38 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=27.4
Q ss_pred cccccccccC-cCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 174 FRCPISLELM-KDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 174 ~~Cpic~~~~-~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
-.|--|.--. .--..++|.|.||..|-.. ...+.||.|..++.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc---CccccCcCcccHHH
Confidence 3455554322 1223579999999999543 23568999976654
No 434
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.13 E-value=1.6e+02 Score=24.31 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHh
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLS------STDPRTQEHAVTALLN 334 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~n 334 (551)
...+..|...|.+.+|.++..|+..|-.+.+... .....+....++..++++.. ..+..++..+...+..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4688999999999999999999999999998654 45556666666666655311 1266788877766654
No 435
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.06 E-value=12 Score=29.47 Aligned_cols=13 Identities=23% Similarity=0.917 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHh
Q 008835 194 TYERSCIQKWLDA 206 (551)
Q Consensus 194 ~~~~~ci~~~~~~ 206 (551)
-|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 436
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=44.57 E-value=19 Score=41.97 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=29.4
Q ss_pred CCCCCCCccccccc--ccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 167 SPVIPDDFRCPISL--ELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 167 ~~~~~~~~~Cpic~--~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
-.++|.++.||-|. +...|+- .-.| |+ -..++||.|+.++...
T Consensus 908 VNPL~PHY~Cp~Cky~Ef~~d~s-vgsG--fD---------LpdK~CPkCg~pl~kD 952 (1444)
T COG2176 908 VNPLPPHYLCPECKYSEFIDDGS-VGSG--FD---------LPDKDCPKCGTPLKKD 952 (1444)
T ss_pred cCCCCccccCCCCceeeeecCCC-cCCC--CC---------CCCCCCCcCCCccccC
Confidence 34789999999997 4556552 2223 32 2478899999988643
No 437
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=42.97 E-value=12 Score=32.96 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=17.1
Q ss_pred CCcccccccccCcCCeeccC
Q 008835 172 DDFRCPISLELMKDPVIVST 191 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~c 191 (551)
++.+||||++...+.|.+-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999998754
No 438
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=42.87 E-value=1e+02 Score=31.17 Aligned_cols=76 Identities=11% Similarity=0.118 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHcC--ChHHHHHhhcc---CChhhHHHHHHHHHHHhcChhhHHHhh-------hCC
Q 008835 405 RGKKDAATAIFNLSIYQGNKARAVRAG--IVPPLMRFLKD---AGGGMVDEALAILAILASHQEGKTAIG-------QAE 472 (551)
Q Consensus 405 ~~~~~a~~aL~nL~~~~~~~~~l~~~g--~i~~Lv~lL~~---~~~~~~~~al~~L~nL~~~~~~~~~i~-------~~~ 472 (551)
.++..|+..+..+...+.....++..+ ++..|++++.. ....++..|+.+|..++.+......|+ .+|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 345566666666666666777788776 99999999975 345778899999999988644333332 246
Q ss_pred CHHHHHHH
Q 008835 473 PIPVLMEV 480 (551)
Q Consensus 473 ~v~~L~~l 480 (551)
.++.+++.
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66666654
No 439
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=42.28 E-value=4.5e+02 Score=27.99 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=37.1
Q ss_pred CHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhh------CChHHHHHHHHHHHHHH
Q 008835 473 PIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQ 542 (551)
Q Consensus 473 ~v~~L~~lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~k~~A~~lL~~l~ 542 (551)
.++.++..|.+ +.......+-.++.||+..... .-++..|..++.+ .+.++-+.|...++.+-
T Consensus 214 sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 214 SLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLL 284 (464)
T ss_pred HHHHHHHHHhhHhcccccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHH
Confidence 34555665543 2345666777788888864422 1246777777732 24555667777777664
No 440
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=42.18 E-value=1.6e+02 Score=28.72 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc---------
Q 008835 349 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI--------- 419 (551)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~--------- 419 (551)
+.+.-|.+.|+..++..+ .++..|+ ...+.....||.|+..=. ++++...++..|.+|+.
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg--------~~~iv~~DLiPiL~~~~~--~~~l~~~~l~LLV~LT~P~~~~~~~~ 81 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLG--------EWNIVQKDLIPILISYKD--DDKLFLACLRLLVNLTWPIELLVESQ 81 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHH--------HhchhhhhHHHHHHhccC--chHHHHHHHHHHHHhCCCHHHhccCC
Q ss_pred ----------------CCChHHHHHHcCChHHHHHhh-----------ccCChhhHHHHHHHHHHHhcChhhHHHhhhCC
Q 008835 420 ----------------YQGNKARAVRAGIVPPLMRFL-----------KDAGGGMVDEALAILAILASHQEGKTAIGQAE 472 (551)
Q Consensus 420 ----------------~~~~~~~l~~~g~i~~Lv~lL-----------~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~ 472 (551)
-...+..+.+.+++..++.++ +..+..+.+.++..+.|+..-|+....-...+
T Consensus 82 ~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~ 161 (266)
T PF04821_consen 82 PKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSD 161 (266)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHHH
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELL 541 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~l 541 (551)
.=+.........+.+.|+...|+.+..+. ...-..-..+++.+|
T Consensus 162 -------------------------~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll 206 (266)
T PF04821_consen 162 -------------------------EDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLL 206 (266)
T ss_pred -------------------------hhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHH
No 441
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=41.98 E-value=4.1e+02 Score=27.41 Aligned_cols=126 Identities=18% Similarity=0.126 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCcchhHHhhh--hCcHHHHHHHhc---cCChhHHHHHHHHHHHhccCCCh-------------HHH
Q 008835 365 ARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLLC---DGTPRGKKDAATAIFNLSIYQGN-------------KAR 426 (551)
Q Consensus 365 ~~~~aa~~L~~Ls~~~~~~~~i~~--~~~i~~Lv~lL~---~~~~~~~~~a~~aL~nL~~~~~~-------------~~~ 426 (551)
-+..|+..|..|+..-+ ..+.. .+.+..++.-.. +.+.+-+..|+..+..|+..... -..
T Consensus 227 rR~AA~dfl~~L~~~~~--~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFE--KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred cHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 35667778888864321 11111 123333322111 23567777888888888875532 223
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 008835 427 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 496 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L 496 (551)
+...-++|-|. -=.+..+-++..|++.+......- .++.+. +.+|.++..|.+++.-+...|+.++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 44444555554 111245667788888887776642 223333 4799999999999988888887654
No 442
>PLN02400 cellulose synthase
Probab=41.71 E-value=16 Score=42.43 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=36.7
Q ss_pred CCcccccccccC-----cCCeec--cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 172 DDFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 172 ~~~~Cpic~~~~-----~~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
..-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 344899998753 356553 688889999997656679999999987765
No 443
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=41.40 E-value=1.6e+02 Score=24.33 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=50.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHh---hh---CChHHHHHHHHHHHHHH
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELS---ES---GTDRAKRKAGSILELLQ 542 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll---~~---~~~~~k~~A~~lL~~l~ 542 (551)
++..|.+-|.+.++..+..|+.+|-.++.+.+ .....+.....+..++.+. .. .+..+|.++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 55667777778889999999999999988774 4556666666666555431 11 26788999998887643
No 444
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.29 E-value=5.6e+02 Score=28.77 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCc--c-hhHHhhh--hCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHH
Q 008835 352 PDIVDVLKNGSMEARENAAATLFSLSVID--E-NKVAIGA--AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 426 (551)
Q Consensus 352 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~-~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 426 (551)
|.|.+-|+-.+.+++.+|+..+.++--.. + .+..+-. ..-+..|.++|.++-+.++..|..-++.+.+ --..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fWe 253 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITS---KFWE 253 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHHH
Confidence 44556677778899999999999885332 1 2222222 1456788999999888888777666555432 1122
Q ss_pred HHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 427 AVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~-----~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
++-..++..|+.-+.+ ...+++-.....|-.+..+|..-..+- -++|.+=..|++.+..+|-.++.+|..+-.
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 3333334444443332 334555556666666666665443322 245555556677788999999888877654
No 445
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.88 E-value=76 Score=32.10 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHH--hcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 008835 450 EALAILAILAS-HQEGKTAIGQAEPIPVLMEVI--RTGSPRNRENAAAVLWAICTGDAEQLKIAREL 513 (551)
Q Consensus 450 ~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL--~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~ 513 (551)
+...++++||. +++.+..+.+.|+++.++.-- .+.+|-+++..+.++.+|..++.++...+...
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 46778999988 688899999999999887644 34569999999999999999998777776543
No 446
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=40.48 E-value=13 Score=26.03 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=11.9
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|..
T Consensus 29 ~~Lp~~w~CP~C~a 42 (50)
T cd00730 29 EDLPDDWVCPVCGA 42 (50)
T ss_pred hHCCCCCCCCCCCC
Confidence 46899999999974
No 447
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=40.35 E-value=20 Score=29.56 Aligned_cols=21 Identities=38% Similarity=0.865 Sum_probs=16.0
Q ss_pred CCeec---cCcccccHHHHHHHHHh
Q 008835 185 DPVIV---STGQTYERSCIQKWLDA 206 (551)
Q Consensus 185 ~Pv~~---~cgh~~~~~ci~~~~~~ 206 (551)
.||.+ +|+ |.||.|+++|..-
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~I 87 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHGI 87 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhCC
Confidence 68875 343 6899999999863
No 448
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=39.55 E-value=2.3e+02 Score=24.75 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=25.1
Q ss_pred hhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 388 AAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 388 ~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
+...-..+..+|.+++.++++.|+.+|..-
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 346667788999999999999999998863
No 449
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=39.49 E-value=17 Score=35.09 Aligned_cols=51 Identities=16% Similarity=0.354 Sum_probs=32.2
Q ss_pred CCCcccccccccCcC-Ce--------eccCcccccHHHHH-HHHHhC---------CCCCCCCcccccCC
Q 008835 171 PDDFRCPISLELMKD-PV--------IVSTGQTYERSCIQ-KWLDAG---------HKTCPKTQQTLLHT 221 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv--------~~~cgh~~~~~ci~-~~~~~~---------~~~CP~c~~~l~~~ 221 (551)
+..|.|+.|...+.. |- .++|-..+|..-+. .|+-+| .+.||.|++.|.++
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 677899999876642 11 13444445555443 477654 35799999888654
No 450
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.11 E-value=1.1e+02 Score=36.64 Aligned_cols=171 Identities=12% Similarity=0.109 Sum_probs=82.0
Q ss_pred CCcHHHHHHHhc--CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc----CC---hhHHHHHHHHHHHhcc
Q 008835 349 GAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD----GT---PRGKKDAATAIFNLSI 419 (551)
Q Consensus 349 g~i~~Lv~~L~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~----~~---~~~~~~a~~aL~nL~~ 419 (551)
|.+-+...+... ...+++.....+|.++-........- | -+.++++++. +. ..+...+...|.-++.
T Consensus 840 ~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~---~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIss 915 (1610)
T KOG1848|consen 840 GMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLH---G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISS 915 (1610)
T ss_pred HHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhcc---c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhh
Confidence 444444444433 23566777777777775443221111 2 3444444432 22 2222333333333332
Q ss_pred CC-ChHHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhh-HHHhhhCCCHHHHHHHHhc--CCHHHHHHHHH
Q 008835 420 YQ-GNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEG-KTAIGQAEPIPVLMEVIRT--GSPRNRENAAA 494 (551)
Q Consensus 420 ~~-~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~-~~~i~~~~~v~~L~~lL~~--~~~~~k~~A~~ 494 (551)
+- ..-..=.-.++|+.++.+-.. .+..+--.|++.+|++++.-.. +....+.+.-...++-+.+ .+..+-.++++
T Consensus 916 DfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lw 995 (1610)
T KOG1848|consen 916 DFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLW 995 (1610)
T ss_pred cchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHH
Confidence 21 000011123456666666544 6778888999999999885444 2233333333333443433 22333444444
Q ss_pred HH-----HHHhcCCHHHHHHHHHcCcHHHHHHHhhhCC
Q 008835 495 VL-----WAICTGDAEQLKIARELDAEEALKELSESGT 527 (551)
Q Consensus 495 ~L-----~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 527 (551)
++ .++|.++ ..-++.|+++.+.+++.++.
T Consensus 996 i~ll~~L~~~~~ds----r~eVRngAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 996 IMLLVHLADLCEDS----RAEVRNGAVQTLFRIFNSHG 1029 (1610)
T ss_pred HHHHHHHHHHhccc----hHHHhhhHHHHHHHHHhhhc
Confidence 43 2333322 23455677777777776554
No 451
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=39.00 E-value=2.6e+02 Score=24.32 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCh-hhHHHHHhcCCHHH-HHHhhcC---CCHHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPL-LVELLSS---TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~nLs~ 337 (551)
..++..|...|.+ .++.++..|+..|-.+.+... .....++..+++.- |++++.. .+..++...+..+...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4789999999984 588899999999999988653 45566777899987 9999964 245788888888877653
No 452
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=38.64 E-value=74 Score=31.62 Aligned_cols=57 Identities=28% Similarity=0.358 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh--------------hhHHHHHhcCCHHHHHHhhcC
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA--------------DNRVCIAEAGAIPLLVELLSS 319 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~--------------~~r~~i~~~g~i~~Lv~lL~~ 319 (551)
.....+..+++.|.+.+...+..|+++|..++.+.- .|-..+.+.|+++.|+.+|..
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456789999999999999999999999999886431 344567778999999998864
No 453
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=37.56 E-value=3.3e+02 Score=24.98 Aligned_cols=140 Identities=19% Similarity=0.148 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhhCh-----hhHHHHH-h-----cCCH-HHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhh--
Q 008835 282 EQRAAAGELRLLAKRNA-----DNRVCIA-E-----AGAI-PLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN-- 347 (551)
Q Consensus 282 ~~~~a~~~L~~L~~~~~-----~~r~~i~-~-----~g~i-~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-- 347 (551)
++..|+..|..+++..+ .+...+. + .+.- +.+.-++.++++.+|..|+.+|..|-.....--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 45677888888877522 1111111 1 1233 3444566778999999999999887543211111111
Q ss_pred ---cCCc---------------HHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHH-hhh-hCcHHHHHHHhccCChhH
Q 008835 348 ---AGAI---------------PDIVDVLKNG-SMEARENAAATLFSLSVIDENKVA-IGA-AGAIPALIRLLCDGTPRG 406 (551)
Q Consensus 348 ---~g~i---------------~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~-i~~-~~~i~~Lv~lL~~~~~~~ 406 (551)
.+.+ ..|+..|... +..+......+|..|...-.+... .+- ..++..+..++.+.+..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1111 2244444443 455566667777777655433221 110 134444555666778888
Q ss_pred HHHHHHHHHHhccCC
Q 008835 407 KKDAATAIFNLSIYQ 421 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~ 421 (551)
+..++.++..+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 888888888776543
No 454
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.26 E-value=86 Score=26.26 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=31.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE 512 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~ 512 (551)
+++.|+.-|.+.++.+...|+.+|...|... .....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788899999899999999999999999876 44444443
No 455
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=37.07 E-value=31 Score=38.40 Aligned_cols=50 Identities=22% Similarity=0.561 Sum_probs=37.5
Q ss_pred CCccccccc--ccCcCCeeccCccc-----ccHHHHHHHHHh-CCCCCCCCcccccCC
Q 008835 172 DDFRCPISL--ELMKDPVIVSTGQT-----YERSCIQKWLDA-GHKTCPKTQQTLLHT 221 (551)
Q Consensus 172 ~~~~Cpic~--~~~~~Pv~~~cgh~-----~~~~ci~~~~~~-~~~~CP~c~~~l~~~ 221 (551)
++-.|-||. ..--+|..-||..+ ..++|+-+|..- +...|-.|..++.-+
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 457899986 35567877777654 478999999984 557899998777643
No 456
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=37.03 E-value=4e+02 Score=25.81 Aligned_cols=175 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChh--------HHHHHHHHHHHhccCC
Q 008835 350 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPR--------GKKDAATAIFNLSIYQ 421 (551)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~--------~~~~a~~aL~nL~~~~ 421 (551)
++...-+.+.+++....-.|...|..+-... ++++++++++.++.- +......+|+.++.
T Consensus 43 a~~~~~e~~~~~~~~~~~~a~~LLaq~re~~----------A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~-- 110 (249)
T PF06685_consen 43 AIERANELLDDEEYNLHFYALYLLAQFREER----------ALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD-- 110 (249)
T ss_pred HHHhHHHhccCcchHHHHHHHHHHHHHhhhh----------hHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC--
Q ss_pred ChHHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHH-HhcCCHHHHHHHHHHHH
Q 008835 422 GNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEV-IRTGSPRNRENAAAVLW 497 (551)
Q Consensus 422 ~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~l-L~~~~~~~k~~A~~~L~ 497 (551)
|-++.|..++.+ -+.-++..|+.+|..++. ++..|..++ ..+..++.. +......+-..-+..++
T Consensus 111 ---------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi--~~f~~ll~~~l~~~~~~~~~~Lv~~~~ 179 (249)
T PF06685_consen 111 ---------GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI--QYFRELLNYFLERNPSFLWGSLVADIC 179 (249)
T ss_pred ---------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHH
Q ss_pred HHhcCC-HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHHh
Q 008835 498 AICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMA 547 (551)
Q Consensus 498 ~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~ 547 (551)
.|.-.. -.....+.+.|.|+.-.--+.+-....+..--+.+..+.+..++
T Consensus 180 dL~~~EL~~~I~~~f~~~lVd~~~i~~e~ve~~l~~~~e~~~~~~~~~~~l 230 (249)
T PF06685_consen 180 DLYPEELLPEIRKAFEDGLVDPSFIDLEDVEEALAREKERVLPRLRKSYEL 230 (249)
T ss_pred hcCHHHhHHHHHHHHHcCCCCccccCHHHHHHHHhhcHHHHHHHHHhcchh
No 457
>PF15616 TerY-C: TerY-C metal binding domain
Probab=36.86 E-value=13 Score=31.98 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=30.9
Q ss_pred CCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 169 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.+...-.||-|....---+- .||+.+|-. ..+..+||-|++...
T Consensus 73 eL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 73 ELIGAPGCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGS 116 (131)
T ss_pred HhcCCCCCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeee
Confidence 34444679999987654333 899999844 245689999997654
No 458
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=36.83 E-value=1.1e+02 Score=30.97 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcccCCCchHHHhhcC--CcHHHHHHHhcC---CHHHHHHHHHHHHHhcCCcchhHHhhh-------hC
Q 008835 323 RTQEHAVTALLNLSINDSNKGTIVNAG--AIPDIVDVLKNG---SMEARENAAATLFSLSVIDENKVAIGA-------AG 390 (551)
Q Consensus 323 ~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~~L~~~---~~~~~~~aa~~L~~Ls~~~~~~~~i~~-------~~ 390 (551)
.++-.|+..+..+..+......+...+ .+..|+++++.+ ..+++..|..+|..++........+.. +|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 466777777777776666677777555 999999999876 478899999999999875432222222 26
Q ss_pred cHHHHHH
Q 008835 391 AIPALIR 397 (551)
Q Consensus 391 ~i~~Lv~ 397 (551)
+++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6666654
No 459
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=36.67 E-value=34 Score=24.93 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=9.1
Q ss_pred CCCCCCCCcccccC
Q 008835 207 GHKTCPKTQQTLLH 220 (551)
Q Consensus 207 ~~~~CP~c~~~l~~ 220 (551)
.+++||.|+.+++.
T Consensus 2 ~HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 2 PHKHCPVCGKPIPP 15 (59)
T ss_pred CCCcCCcCCCcCCc
Confidence 35667777776654
No 460
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=36.56 E-value=15 Score=25.43 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=9.0
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|.-
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 46899999999964
No 461
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=36.17 E-value=19 Score=35.31 Aligned_cols=26 Identities=12% Similarity=0.542 Sum_probs=16.7
Q ss_pred CcccccccccCc---CCeeccCcccccHH
Q 008835 173 DFRCPISLELMK---DPVIVSTGQTYERS 198 (551)
Q Consensus 173 ~~~Cpic~~~~~---~Pv~~~cgh~~~~~ 198 (551)
.|.||+|...|. ....-+.||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 489999998884 12233566777533
No 462
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.05 E-value=2.3e+02 Score=30.23 Aligned_cols=69 Identities=19% Similarity=0.112 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-HHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHh
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSST--DPRTQEHAVTALLN 334 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~n 334 (551)
.++..|.+++.+.++.+|..|+..|-.+.+.+...-+ .|++.++++-+|.+.... +..+|+.++..|-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 6899999999988889999999988888886655544 788899999999988765 77889988877753
No 463
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=35.99 E-value=5.4 Score=39.64 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=21.0
Q ss_pred CcccccccccCcCCeeccC---c--ccccHHHHHHHHHhCCCCCCCCccc
Q 008835 173 DFRCPISLELMKDPVIVST---G--QTYERSCIQKWLDAGHKTCPKTQQT 217 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~c---g--h~~~~~ci~~~~~~~~~~CP~c~~~ 217 (551)
.-.||+|+....--++..- | +-+|..|=..|--. ...||.|+..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 4689999987655555443 5 45799998888653 5679999854
No 464
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.60 E-value=18 Score=23.04 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=7.3
Q ss_pred CCCCCCCccc
Q 008835 208 HKTCPKTQQT 217 (551)
Q Consensus 208 ~~~CP~c~~~ 217 (551)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999864
No 465
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=35.58 E-value=4.5e+02 Score=27.52 Aligned_cols=228 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcc-hhHHhh
Q 008835 310 IPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDE-NKVAIG 387 (551)
Q Consensus 310 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~-~~~~i~ 387 (551)
+..|+.++.++|+.-|...-.+|.++-..-.+....+.......+.+.+..+ ..-.....+.+++++-..-. .-....
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh 214 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEH 214 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHH
Q ss_pred hhCcHHHHHHHhccCC-hhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhH
Q 008835 388 AAGAIPALIRLLCDGT-PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGK 465 (551)
Q Consensus 388 ~~~~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~ 465 (551)
..=....|+.|.+... ......-..++.-....+..-...+ +..++..--..+..-...-+.-+..+... +...
T Consensus 215 ~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~----i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 215 KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV----IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH----HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH----HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Q ss_pred HHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC------cHHHHHHHhhhC-ChHHHHHHHHHH
Q 008835 466 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELD------AEEALKELSESG-TDRAKRKAGSIL 538 (551)
Q Consensus 466 ~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g------~i~~L~~ll~~~-~~~~k~~A~~lL 538 (551)
-.-+..-....+...+.+.+..+-+.|..+. +++.....+.+.. +++.|.....++ +..++..|..+|
T Consensus 291 f~~i~~~lf~~la~ci~S~h~qVAErAl~~w-----~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl 365 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISSPHFQVAERALYFW-----NNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVL 365 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG-----GSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHhHHH
Q 008835 539 ELLQRIDM 546 (551)
Q Consensus 539 ~~l~~~~~ 546 (551)
+.|.+.|.
T Consensus 366 ~~l~~~d~ 373 (409)
T PF01603_consen 366 KILMEMDP 373 (409)
T ss_dssp HHHHTTSH
T ss_pred HHHHHhCH
No 466
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=35.43 E-value=24 Score=31.72 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=8.5
Q ss_pred CcccccccccCc
Q 008835 173 DFRCPISLELMK 184 (551)
Q Consensus 173 ~~~Cpic~~~~~ 184 (551)
.+.||+|+.+..
T Consensus 134 ~~vC~vCGy~~~ 145 (166)
T COG1592 134 VWVCPVCGYTHE 145 (166)
T ss_pred EEEcCCCCCccc
Confidence 788999855444
No 467
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=34.71 E-value=38 Score=27.62 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=32.8
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHh
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCEN 239 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~ 239 (551)
..+|.-|.||-|.+. .-||-+. + ..++..||.|+...... +.+-..--.....|...
T Consensus 16 ~klpt~f~CP~Cge~-~v~v~~~--k-----------~~~h~~C~~CG~y~~~~-V~~l~epIDVY~~wiD~ 72 (99)
T PRK14892 16 PKLPKIFECPRCGKV-SISVKIK--K-----------NIAIITCGNCGLYTEFE-VPSVYDEVDVYNKFIDL 72 (99)
T ss_pred cCCCcEeECCCCCCe-EeeeecC--C-----------CcceEECCCCCCccCEE-CCccccchhhHHHHHHH
Confidence 467889999999952 3332221 1 13678899998765432 33222333445666443
No 468
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=34.70 E-value=3.2e+02 Score=31.13 Aligned_cols=110 Identities=8% Similarity=0.073 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH-HHH-HcC
Q 008835 354 IVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA-RAV-RAG 431 (551)
Q Consensus 354 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~-~l~-~~g 431 (551)
+...+..++.........++.++...+.....- ...-+++-..-.+..-..+......+|..++..+.... .+. +.+
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~~ 524 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDPD 524 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCcc
Confidence 444444555555555555666555443211111 11111122222222223445567778888887655433 344 568
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH
Q 008835 432 IVPPLMRFLKDAGGGMVDEALAILAILASHQEGK 465 (551)
Q Consensus 432 ~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~ 465 (551)
+...++.++.+++.++.+.|..+|..... .++|
T Consensus 525 ~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R 557 (727)
T PF12726_consen 525 AAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGR 557 (727)
T ss_pred hhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcH
Confidence 99999999999999999999999999987 4443
No 469
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.30 E-value=5.1e+02 Score=28.04 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=84.8
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccC--------ChhHHHHHHHHHHHhccCCC
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG--------TPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~--------~~~~~~~a~~aL~nL~~~~~ 422 (551)
...+++.+-.+++..+..|+..|.. +... ...+|.++.++..+ +-+.....+..++.|..++.
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T---DsGL------~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET---DSGL------QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc---CccH------HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 4556666666777788777766553 2211 12456677766543 44566677778888888776
Q ss_pred hHHHHHHcCChHHHHHhhcc----------CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC-C-HHHHH
Q 008835 423 NKARAVRAGIVPPLMRFLKD----------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-S-PRNRE 490 (551)
Q Consensus 423 ~~~~l~~~g~i~~Lv~lL~~----------~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~-~-~~~k~ 490 (551)
....-.=+-.+|.++.++-+ .+..+++.|+..+..++.+-...-.-.....+..+.+.+.+. . ....-
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 65544445567777666533 234578889999888887533322224445566666666543 3 33444
Q ss_pred HHHHHHHHHhc
Q 008835 491 NAAAVLWAICT 501 (551)
Q Consensus 491 ~A~~~L~~L~~ 501 (551)
-|+..|..|..
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 45555555553
No 470
>PRK04023 DNA polymerase II large subunit; Validated
Probab=34.11 E-value=25 Score=40.27 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=32.0
Q ss_pred CCCcccccccccCcCCeeccCcc-----cccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQ-----TYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh-----~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
.....||-|+..........||. .||..| .+. .+...||.|+......
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~-~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIE-VEEDECEKCGREPTPY 676 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCc-CCCCcCCCCCCCCCcc
Confidence 35578999998764433345884 489999 222 2346799999887643
No 471
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.68 E-value=24 Score=36.92 Aligned_cols=66 Identities=23% Similarity=0.400 Sum_probs=45.6
Q ss_pred CCCCCcccccc-cccCcCCeec--cCcccccHHHHHHHHHhCCCCCCCCcccc-cCCCCccchhhHHHHHHH
Q 008835 169 VIPDDFRCPIS-LELMKDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTL-LHTALTPNYVLKSLIALW 236 (551)
Q Consensus 169 ~~~~~~~Cpic-~~~~~~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l-~~~~~~~n~~l~~~i~~~ 236 (551)
..++++.||+| .+.|.+-..+ .|+.+||..||.+.+.. ..||.|...- ....+.++..++..+..-
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~ 284 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRI 284 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHH
Confidence 56889999999 8899888775 78899999999988764 3344443322 233355666666655443
No 472
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=33.50 E-value=11 Score=37.60 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=31.3
Q ss_pred CCcccccccccCcCCeec----cCc--ccccHHHHHHHHHhCCCCCCCCccc
Q 008835 172 DDFRCPISLELMKDPVIV----STG--QTYERSCIQKWLDAGHKTCPKTQQT 217 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~----~cg--h~~~~~ci~~~~~~~~~~CP~c~~~ 217 (551)
..-.||+|+....--++. .-| +-+|.-|=..|--. ...||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 345899999876544432 245 35688998888653 5679999863
No 473
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=33.39 E-value=25 Score=37.05 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 483 TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 483 ~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
..++++++.|..++.+++......+..+-+...-..++.++....++.-+.+..++..+.+
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 4569999999999999887653333333344556667777777777776677666666554
No 474
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.36 E-value=1.1e+02 Score=26.94 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=44.6
Q ss_pred HHHHHHhccCCh----hHHHHHHHHHHHhccCCCh-----HHH---HHH--cCC--hHHHHHhhccCChhhHHHHHHHHH
Q 008835 393 PALIRLLCDGTP----RGKKDAATAIFNLSIYQGN-----KAR---AVR--AGI--VPPLMRFLKDAGGGMVDEALAILA 456 (551)
Q Consensus 393 ~~Lv~lL~~~~~----~~~~~a~~aL~nL~~~~~~-----~~~---l~~--~g~--i~~Lv~lL~~~~~~~~~~al~~L~ 456 (551)
..++++|.+.-+ +.-.-=+..|..++..... +.. ++. .|+ |.+|+++|.+.+..+...|..+|.
T Consensus 40 ~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk 119 (154)
T PF11791_consen 40 AFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLKSDDEELAEEAAEALK 119 (154)
T ss_dssp HHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG--G-TTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 356666655322 2222224456666654432 222 332 344 999999998888999999999987
Q ss_pred HHhcChhhHHHhhhCCCHHHHHHHHhc
Q 008835 457 ILASHQEGKTAIGQAEPIPVLMEVIRT 483 (551)
Q Consensus 457 nL~~~~~~~~~i~~~~~v~~L~~lL~~ 483 (551)
+..- -.+.+..+.++-+.
T Consensus 120 ~TlL---------vyDaf~dv~~~ak~ 137 (154)
T PF11791_consen 120 NTLL---------VYDAFNDVAELAKA 137 (154)
T ss_dssp T--T---------TCCHHHHHHHHHHT
T ss_pred hhHH---------HHhhHHHHHHHHHc
Confidence 6432 12345666666655
No 475
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.28 E-value=37 Score=37.50 Aligned_cols=53 Identities=28% Similarity=0.515 Sum_probs=37.4
Q ss_pred CCCCCCCcccccccccCcCCe--------e--ccCcccc--------------------cHHHHHHHHHh-------CCC
Q 008835 167 SPVIPDDFRCPISLELMKDPV--------I--VSTGQTY--------------------ERSCIQKWLDA-------GHK 209 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv--------~--~~cgh~~--------------------~~~ci~~~~~~-------~~~ 209 (551)
..-+|+--.|+-|++-|.||- + +.||-.| |..|-.++-+- ...
T Consensus 95 ~~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~ 174 (750)
T COG0068 95 TQIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPI 174 (750)
T ss_pred cccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccc
Confidence 334677789999999888753 2 4577654 88888777652 235
Q ss_pred CCCCCccccc
Q 008835 210 TCPKTQQTLL 219 (551)
Q Consensus 210 ~CP~c~~~l~ 219 (551)
.||.|+-.+.
T Consensus 175 aCp~CGP~~~ 184 (750)
T COG0068 175 ACPKCGPHLF 184 (750)
T ss_pred cCcccCCCeE
Confidence 6999997654
No 476
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=33.17 E-value=39 Score=23.94 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=25.7
Q ss_pred CCCcccccccccCcCC-eeccCcccccHHHHHHH
Q 008835 171 PDDFRCPISLELMKDP-VIVSTGQTYERSCIQKW 203 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P-v~~~cgh~~~~~ci~~~ 203 (551)
++-|.|..|...+.+. ....-|..||..|..+-
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 4678999999888766 45677888999987653
No 477
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=32.99 E-value=3.4e+02 Score=27.66 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=61.6
Q ss_pred CcHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc----------CChhHHHHHHH
Q 008835 350 AIPDIVDVLKNG-------SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD----------GTPRGKKDAAT 412 (551)
Q Consensus 350 ~i~~Lv~~L~~~-------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~----------~~~~~~~~a~~ 412 (551)
.+|-++.++..+ +.......+.++..|..+........-+..+|.++..+-. .....+..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 355566665443 3445555666666776666544433344577887776522 22477888999
Q ss_pred HHHHhccCCChHHHHHHcCChHHHHHhhccCCh--hhHHHHHHHHHHH
Q 008835 413 AIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG--GMVDEALAILAIL 458 (551)
Q Consensus 413 aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~--~~~~~al~~L~nL 458 (551)
.|..++..-++...-+...++..|.+.|.++.. ....-|+..|..|
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999988643333333344455567776665332 2244455555544
No 478
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=32.99 E-value=5.3e+02 Score=26.62 Aligned_cols=128 Identities=22% Similarity=0.195 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHH-hh--cCCCHHHHHHHHHHHHhcccCCCc-h------------HHH
Q 008835 282 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LL--SSTDPRTQEHAVTALLNLSINDSN-K------------GTI 345 (551)
Q Consensus 282 ~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL--~~~~~~~~~~a~~~L~nLs~~~~~-~------------~~i 345 (551)
-+..|+.-|+.|++.....-..+. .+.|..++. .- .+.+..-+..|+..+..|+..... + ..+
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 355666677778764222111111 122222222 11 134677888899998888764322 1 111
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 414 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL 414 (551)
...-++|.|. -=.+..+-++..|++.+......- .+..+ .+++|.++..|.+++.-+...|+.++
T Consensus 306 f~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 306 FSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1222333332 000224567777888777664331 12222 25899999999999888888888764
No 479
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=32.63 E-value=31 Score=28.44 Aligned_cols=51 Identities=18% Similarity=0.494 Sum_probs=30.1
Q ss_pred CCCCcccccccccCcCCeecc-Cc-----ccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 170 IPDDFRCPISLELMKDPVIVS-TG-----QTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~-cg-----h~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
.++.++|||+++....-|.+. .+ .-|+...+.+....|. .=|..|.+++..
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~s 93 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPS 93 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChh
Confidence 356689999999999999863 11 3699999999988643 358888877654
No 480
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=32.59 E-value=29 Score=41.27 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCccccccc--ccCcCCee-ccCcccccHHHHHHHHHh---------CCCCCCCCcccccC
Q 008835 172 DDFRCPISL--ELMKDPVI-VSTGQTYERSCIQKWLDA---------GHKTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~--~~~~~Pv~-~~cgh~~~~~ci~~~~~~---------~~~~CP~c~~~l~~ 220 (551)
.+-.|-||. .+-.-|.+ +.|||.|...|....+.. |-..||.|..++.+
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
No 481
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=32.53 E-value=54 Score=35.15 Aligned_cols=45 Identities=13% Similarity=0.398 Sum_probs=28.3
Q ss_pred CCCCCCCCcccccccccCc----CCee-ccCcccccHHHHHHHHHhCCCCCCCCccc
Q 008835 166 RSPVIPDDFRCPISLELMK----DPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQT 217 (551)
Q Consensus 166 ~~~~~~~~~~Cpic~~~~~----~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~ 217 (551)
.+......+.|++|+.++. ||.. ++-|..|..- ....+||.|+.+
T Consensus 418 ~~~~~~~~~~c~~c~~~yd~~~g~~~~~~~~gt~~~~l-------p~~~~cp~c~~~ 467 (479)
T PRK05452 418 TTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGTPWSEV-------PDNFLCPECSLG 467 (479)
T ss_pred cccCCCCeEEECCCCeEECCCCCCcccCCCCCCChhhC-------CCCCcCcCCCCc
Confidence 3344567799999996543 2332 5667665321 136789999865
No 482
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=32.02 E-value=1.3e+02 Score=23.86 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 008835 77 LDHDLAVAQKERDPDPAILGRLSEKLHLRTINDLKNESLAFHE 119 (551)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~E~~~l~~ 119 (551)
.+++|.+.+.+++ +.-.+.+|+.-++....+++-..++-+.+
T Consensus 4 ~rEkii~lL~e~~-eplt~~ei~~~~~~~~~~~v~~~L~hiak 45 (97)
T COG3357 4 TREKIISLLLESD-EPLTVAEIFELLNGEKEKEVYDHLEHIAK 45 (97)
T ss_pred HHHHHHHHHHcCC-CcchHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567777776655 55566667666665544444444444444
No 483
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.90 E-value=3.4e+02 Score=23.63 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=53.5
Q ss_pred CCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHH-HHHHhhh---CChHHHHHHHHHHHHHHhH
Q 008835 472 EPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEA-LKELSES---GTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 472 ~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~-L~~ll~~---~~~~~k~~A~~lL~~l~~~ 544 (551)
.++..|-+-|.. .++.+...|..+|-.+..+.+ ....++...+++.. |+.++.. ....++.+...+++...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 356667666664 478888999988888877664 45567777788987 8888863 2458898888888877643
No 484
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=31.37 E-value=3.1e+02 Score=30.06 Aligned_cols=105 Identities=13% Similarity=0.000 Sum_probs=73.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhh--
Q 008835 270 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN-- 347 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-- 347 (551)
.+++...+-++-.+..+...|+.-.+.-| ..+..-.++..+-.+|++.+..++.....+|..|+...++...+..
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP---~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVP---DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcch---HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34444445566677777777776665433 2334444677777888888999999999999999988777665542
Q ss_pred cCCcHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008835 348 AGAIPDIVDVLKNGSMEARENAAATLFSLS 377 (551)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls 377 (551)
..+-..+++++..+..-+|..+..++..+.
T Consensus 356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 356 ERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 456777888888775447777777766654
No 485
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=31.31 E-value=38 Score=37.68 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=47.2
Q ss_pred CCCCCcccccccccCcCCee-ccCcccccHHHHHHHHH-----hCCCCCCCCcccccCCCCccchhhHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLD-----AGHKTCPKTQQTLLHTALTPNYVLKSLIAL 235 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~-----~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~ 235 (551)
...-.+.|||+...|.-|+- ..|.|.-|.... |+- .+.+.||+|.+......++....+...+..
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~ 372 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQS 372 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchh--hhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhh
Confidence 45667899999999988875 689986655532 332 255789999998888888777666665544
No 486
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.74 E-value=2.2e+02 Score=32.59 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh------hhCcHH
Q 008835 320 TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG------AAGAIP 393 (551)
Q Consensus 320 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~------~~~~i~ 393 (551)
++.-+.-.++..|+.|+.+......+++.|+|..|+.+=+-. +.-.-...+|+.++...+.-..+. -+.++.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~ 442 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVK 442 (1516)
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHH
Confidence 466667778888888888887778888888888777664332 222233456666666554333222 224555
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc
Q 008835 394 ALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD 442 (551)
Q Consensus 394 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~ 442 (551)
.-+.+|.-.....+++++....--......-..+-....+..|+.+|++
T Consensus 443 ~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~ 491 (1516)
T KOG1832|consen 443 LAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKD 491 (1516)
T ss_pred HHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6666676554444444433221111111111112234566666666654
No 487
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=30.69 E-value=38 Score=33.88 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=36.1
Q ss_pred CcccccccccCcC----CeeccCcc-----cccHHHHHHHHHh-CCCCCCCCcccccCC
Q 008835 173 DFRCPISLELMKD----PVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKTQQTLLHT 221 (551)
Q Consensus 173 ~~~Cpic~~~~~~----Pv~~~cgh-----~~~~~ci~~~~~~-~~~~CP~c~~~l~~~ 221 (551)
+..|-||...... |...||.. ...+.|++.|+.. +...|..|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4889999875532 66777653 3479999999984 677899998766544
No 488
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=30.57 E-value=40 Score=20.00 Aligned_cols=26 Identities=42% Similarity=0.423 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhc
Q 008835 365 ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC 400 (551)
Q Consensus 365 ~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~ 400 (551)
+|..|+++|..+.. ..+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46678888877744 346778877764
No 489
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=8.3e+02 Score=27.52 Aligned_cols=146 Identities=11% Similarity=0.096 Sum_probs=84.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhccc--CCCc----hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhH
Q 008835 311 PLLVELLSSTDPRTQEHAVTALLNLSI--NDSN----KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV 384 (551)
Q Consensus 311 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~----~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~ 384 (551)
|.|.+-|+..|..+|-+|+..+.++-- +++. +..+++ .-...+..+|+++-+.+|..|..-+....+ ..-.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s--~fWe 253 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS--KFWE 253 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH--HHHH
Confidence 566677788899999999999999742 3333 333433 346778899999988888777654443321 1111
Q ss_pred Hhhhh---CcHHHHHHHh-ccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 008835 385 AIGAA---GAIPALIRLL-CDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 460 (551)
Q Consensus 385 ~i~~~---~~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~ 460 (551)
.|-.. ..+..+++-+ .+...+++......|-.+..++.....+ + -++|.|=..|.+....++-.+..+|..+-.
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-E-QLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-H-HHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 11111 1122222222 1223456666666666666665443322 1 134455566667777787777777766644
Q ss_pred C
Q 008835 461 H 461 (551)
Q Consensus 461 ~ 461 (551)
.
T Consensus 332 v 332 (1005)
T KOG1949|consen 332 V 332 (1005)
T ss_pred h
Confidence 3
No 490
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=30.34 E-value=3.9e+02 Score=23.72 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=53.8
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhh-CC-CHHHHHH-HHhcCC--HHHHHHHHHHHHHH
Q 008835 425 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ-AE-PIPVLME-VIRTGS--PRNRENAAAVLWAI 499 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~-~~-~v~~L~~-lL~~~~--~~~k~~A~~~L~~L 499 (551)
..+++..+.+.|...+.+.+..+...++.++..|... -+..+.. -+ .+..++. ++.+.+ ..-|+.+..++..+
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3466777888888888777788899999999998853 2222221 12 3455555 666443 46788899999999
Q ss_pred hcCC
Q 008835 500 CTGD 503 (551)
Q Consensus 500 ~~~~ 503 (551)
|...
T Consensus 145 ~~~p 148 (168)
T PF12783_consen 145 CKDP 148 (168)
T ss_pred HhCh
Confidence 9755
No 491
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=30.22 E-value=33 Score=19.70 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=4.2
Q ss_pred CCCCCCccc
Q 008835 209 KTCPKTQQT 217 (551)
Q Consensus 209 ~~CP~c~~~ 217 (551)
..||.|+.+
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 335555543
No 492
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=30.07 E-value=93 Score=33.02 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=48.1
Q ss_pred HhhcCCCHHHHHHHHHHHHhcccCCCchHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008835 315 ELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSV 378 (551)
Q Consensus 315 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~ 378 (551)
.+..+.++++++.|..++.+++.+.++|.... ....-..+++.+-...+++-+.++.++..+..
T Consensus 335 ~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 335 SLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33445799999999999999999988877544 45555677788877777777777777766553
No 493
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=29.92 E-value=40 Score=21.29 Aligned_cols=35 Identities=20% Similarity=0.487 Sum_probs=19.6
Q ss_pred ccccccccCcC--CeeccCcccccHHHHHHHHHhCCCCCCCCcccc
Q 008835 175 RCPISLELMKD--PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTL 218 (551)
Q Consensus 175 ~Cpic~~~~~~--Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l 218 (551)
.|+.|.+.+.+ .++..-|..|...| +.|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C---------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC---------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC---------CCCcccCCcC
Confidence 36777776665 33334445554433 5577776655
No 494
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=29.79 E-value=7.2 Score=30.24 Aligned_cols=37 Identities=27% Similarity=0.661 Sum_probs=29.0
Q ss_pred cccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 174 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
-.|-||......| |..||..|-.+ ...|.+|++.+.+
T Consensus 55 ~kC~iCk~~vHQ~-----GshYC~tCAY~-----KgiCAMCGKki~n 91 (100)
T KOG3476|consen 55 AKCRICKQLVHQP-----GSHYCQTCAYK-----KGICAMCGKKILN 91 (100)
T ss_pred chhHHHHHHhcCC-----cchhHhHhhhh-----hhHHHHhhhHhhc
Confidence 4699999998887 87899999654 3468999887654
No 495
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.61 E-value=1.1e+02 Score=25.53 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=33.1
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhh
Q 008835 432 IVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ 470 (551)
Q Consensus 432 ~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~ 470 (551)
+|+.|+.-|.++++.++..|+.+|...|..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578899999999999999999999999998766665554
No 496
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.57 E-value=2.1e+02 Score=25.36 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=49.2
Q ss_pred ccccHHHHHHHHHhCCCCCCCCcccccCCCCccchh---hHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcCcccHHHHH
Q 008835 193 QTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYV---LKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAID 269 (551)
Q Consensus 193 h~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~---l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 269 (551)
+.||..|=.+-+.. ||.|..++.-....+... -..-.-.+|..=|.+.|=. ...-.+..
T Consensus 28 ~~fC~kCG~~tI~~----Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt--------------~~~L~aa~ 89 (158)
T PF10083_consen 28 EKFCSKCGAKTITS----CPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWT--------------ENALEAAN 89 (158)
T ss_pred HHHHHHhhHHHHHH----CcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchH--------------HHHHHHHH
Confidence 46898887666654 999998886443221100 0011334555544444322 11123455
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChh
Q 008835 270 ALLGKLANGNVEEQRAAAGELRLLAKRNAD 299 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~ 299 (551)
.|++.+..-+++.++.--..|..|.++++.
T Consensus 90 el~ee~eeLs~deke~~~~sl~dL~~d~Pk 119 (158)
T PF10083_consen 90 ELIEEDEELSPDEKEQFKESLPDLTKDTPK 119 (158)
T ss_pred HHHHHhhcCCHHHHHHHHhhhHHHhhcCCc
Confidence 566655566677777666777777766553
No 497
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.43 E-value=9.8e+02 Score=29.61 Aligned_cols=221 Identities=14% Similarity=0.026 Sum_probs=112.2
Q ss_pred hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch-HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008835 299 DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLS 377 (551)
Q Consensus 299 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls 377 (551)
..|..+++.|....++.-+++.|+.++..|.+++...-.+-++. +...+.-.+-.+..+.+++..
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~-------------- 1495 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSR-------------- 1495 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--------------
Confidence 34557788899999999999999999999987776543333332 111111122222222222210
Q ss_pred CCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCCh---hhHHHHHHH
Q 008835 378 VIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG---GMVDEALAI 454 (551)
Q Consensus 378 ~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~---~~~~~al~~ 454 (551)
.++.+......-++.....++-.++..........|.. ...++-..+|.+-.++.+... ..++-.+..
T Consensus 1496 -e~~~Rl~si~alF~A~~~~ill~Ps~~ly~~In~~L~~--------s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~L 1566 (1758)
T KOG1791|consen 1496 -ESDPRLISICALFIAFFSDILLVPSEGLYFPINGLLLS--------SKIVDLQGIPIFHRFFYSSVFEHHTEREWVLEL 1566 (1758)
T ss_pred -CCCcchhhHHHHHHHHHHHHHcCCccccchhHHHHHHh--------hhhcccCCCccHHHHHHhccccccchhhhhHHH
Confidence 00111100001111122222222222222111111111 245666778888888865322 233444455
Q ss_pred HHHHhcChhhHHHhhhCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC--ChHH
Q 008835 455 LAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRA 530 (551)
Q Consensus 455 L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~--~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~ 530 (551)
+...-......+.....+.+..++.+..+. +...+..-..+|.+-..-.......+-..|....+..++.++ .+..
T Consensus 1567 V~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~ 1646 (1758)
T KOG1791|consen 1567 VSKGLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVL 1646 (1758)
T ss_pred HHHHhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHH
Confidence 554444555666666677777777777542 233333434444443333334445556679999999999988 3444
Q ss_pred HHH-HHHHHHHHH
Q 008835 531 KRK-AGSILELLQ 542 (551)
Q Consensus 531 k~~-A~~lL~~l~ 542 (551)
... -..++..+.
T Consensus 1647 ~~~l~~~v~~~l~ 1659 (1758)
T KOG1791|consen 1647 LKALVISVLKVLW 1659 (1758)
T ss_pred HhhhHHHHHHHHH
Confidence 444 344555554
No 498
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=28.97 E-value=6.5e+02 Score=25.87 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhcccCCCchHHHhhc---CCcHHHHHHHhcCC--HHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHH
Q 008835 321 DPRTQEHAVTALLNLSINDSNKGTIVNA---GAIPDIVDVLKNGS--MEARENAAATLFSLSVIDENKVAIGAAGAIPAL 395 (551)
Q Consensus 321 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~---g~i~~Lv~~L~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~L 395 (551)
+..+...|+.+|+.+..++.--..+-+. -.++..+..|.+++ -.+...++++|..=.. ...+.....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f----~~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF----SPKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----CCcccchhhHHHH
Confidence 5677788999998887665443333321 14566666675553 3444455555543222 2223334444445
Q ss_pred HHHhcc-----CChhHHHHHHHHHHHhccCCChHHHHHHc-C-ChHHHHHhhccCChhhHHHHHHHHHHHh
Q 008835 396 IRLLCD-----GTPRGKKDAATAIFNLSIYQGNKARAVRA-G-IVPPLMRFLKDAGGGMVDEALAILAILA 459 (551)
Q Consensus 396 v~lL~~-----~~~~~~~~a~~aL~nL~~~~~~~~~l~~~-g-~i~~Lv~lL~~~~~~~~~~al~~L~nL~ 459 (551)
+..+.+ ++..+...++.++.+|....+. .|++. + -++.++..+-+....++..|..++..+.
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 544432 3456677788888888764332 23332 2 4667777776666677777766665554
No 499
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=28.88 E-value=4.6e+02 Score=28.80 Aligned_cols=99 Identities=16% Similarity=-0.037 Sum_probs=64.4
Q ss_pred cCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhh--CCCHHHHH
Q 008835 401 DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLM 478 (551)
Q Consensus 401 ~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~--~~~v~~L~ 478 (551)
+-++..+..+...|.--+..-+ ..+.+-.++...--+|.+.+..++.....+|.-|+.+......+.+ ...-..++
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP--~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rIL 363 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVP--DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRIL 363 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcch--HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3445556555555543322111 1223333566666677788888999999999999997655554443 24667788
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhc
Q 008835 479 EVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 479 ~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
+++..+..-+|-++...+..+..
T Consensus 364 E~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 364 EFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHhhccchhhHHHHHHHHHHHH
Confidence 88888777788888888777654
No 500
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=28.32 E-value=9.3e+02 Score=31.53 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=100.7
Q ss_pred hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH
Q 008835 347 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 425 (551)
.++-+..+...+..+.-..+..+...+.+|+..+. +...-.....+..+-++..++........+.-+..+........
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 34455556666666666777777777777766443 11111111222222222223333333333333222222111111
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH-HhhhCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCC
Q 008835 426 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT-AIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~-~i~~~~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~ 503 (551)
.-.-...+..++..+.+.+..+...++.++..||.....-. ...+ ..++.+.+.+.. ++..-+..+.+++.+++...
T Consensus 643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 11123445667777777777777888888888888644211 1122 556777777765 44666778889999998755
Q ss_pred HHHH-HHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHHHH
Q 008835 504 AEQL-KIARELDAEEALKELSESG-TDRAKRKAGSILELLQ 542 (551)
Q Consensus 504 ~~~~-~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~l~ 542 (551)
.-.. ......-++..|...+..+ ..-+++.+...+.++.
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 3211 1111223445555555444 4455666666666553
Done!