Query 008835
Match_columns 551
No_of_seqs 487 out of 2795
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 12:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.6E-31 5.6E-36 271.4 22.4 263 281-544 47-335 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 5.1E-31 1.8E-35 278.9 23.0 278 267-545 3-362 (457)
3 3l6x_A Catenin delta-1; cateni 100.0 5.3E-30 1.8E-34 273.7 26.4 279 265-544 47-385 (584)
4 3nmz_A APC variant protein; pr 100.0 2E-30 6.7E-35 271.2 21.3 262 283-545 165-452 (458)
5 1xm9_A Plakophilin 1; armadill 100.0 1.7E-29 5.7E-34 267.3 25.0 285 262-548 40-454 (457)
6 3now_A UNC-45 protein, SD10334 100.0 2.4E-29 8.2E-34 277.3 26.6 281 264-544 419-738 (810)
7 3ul1_B Importin subunit alpha- 100.0 1E-28 3.6E-33 265.0 26.9 281 263-543 97-387 (510)
8 3tpo_A Importin subunit alpha- 100.0 2.9E-28 9.8E-33 262.9 28.9 281 263-543 116-406 (529)
9 3nmz_A APC variant protein; pr 100.0 1.4E-28 4.7E-33 257.2 22.7 281 262-542 66-407 (458)
10 3now_A UNC-45 protein, SD10334 100.0 4E-28 1.4E-32 267.5 25.8 283 263-546 492-785 (810)
11 3l6x_A Catenin delta-1; cateni 100.0 6.1E-28 2.1E-32 257.9 26.3 283 263-547 87-480 (584)
12 3nmw_A APC variant protein; AR 100.0 1.9E-28 6.6E-33 248.8 18.5 245 261-505 68-338 (354)
13 4b8j_A Importin subunit alpha- 100.0 8.4E-27 2.9E-31 251.5 30.7 281 264-544 115-401 (528)
14 3tpo_A Importin subunit alpha- 100.0 1.6E-26 5.6E-31 249.2 29.6 284 263-546 159-452 (529)
15 3ul1_B Importin subunit alpha- 100.0 2.7E-26 9.2E-31 246.3 28.5 283 263-545 140-432 (510)
16 4hxt_A De novo protein OR329; 99.9 3.7E-26 1.3E-30 221.2 24.7 238 266-503 2-243 (252)
17 1wa5_B Importin alpha subunit; 99.9 1E-25 3.6E-30 243.1 30.3 281 264-544 128-413 (530)
18 4hxt_A De novo protein OR329; 99.9 5.6E-26 1.9E-30 219.9 24.7 238 308-545 2-243 (252)
19 4b8j_A Importin subunit alpha- 99.9 3E-25 1E-29 239.3 32.2 283 264-546 158-446 (528)
20 4db8_A Armadillo-repeat protei 99.9 2.5E-26 8.4E-31 223.1 20.2 236 266-501 12-251 (252)
21 2jdq_A Importin alpha-1 subuni 99.9 1E-24 3.4E-29 229.8 32.3 278 266-544 64-348 (450)
22 2jdq_A Importin alpha-1 subuni 99.9 9.6E-25 3.3E-29 229.9 31.4 281 265-546 106-393 (450)
23 1wa5_B Importin alpha subunit; 99.9 1.1E-24 3.9E-29 234.9 31.3 278 266-543 87-370 (530)
24 4db8_A Armadillo-repeat protei 99.9 1.6E-25 5.5E-30 217.3 20.7 236 308-543 12-251 (252)
25 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-23 3.8E-28 226.6 25.5 276 265-543 58-339 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 2.5E-23 8.5E-28 229.7 26.2 276 265-543 55-336 (644)
27 1jdh_A Beta-catenin; beta-cate 99.9 6.2E-24 2.1E-28 228.6 18.8 277 264-544 15-296 (529)
28 3tt9_A Plakophilin-2; cell adh 99.9 1.1E-23 3.8E-28 199.8 16.7 195 266-461 8-230 (233)
29 2z6h_A Catenin beta-1, beta-ca 99.9 2E-23 6.8E-28 230.5 20.4 277 264-544 12-293 (644)
30 3opb_A SWI5-dependent HO expre 99.9 4.2E-23 1.4E-27 223.4 21.3 281 264-544 374-729 (778)
31 4db6_A Armadillo repeat protei 99.9 2.7E-22 9.3E-27 188.9 20.4 197 265-461 11-210 (210)
32 2z6g_A B-catenin; FULL-length, 99.9 5.2E-22 1.8E-26 223.1 25.9 276 265-543 191-472 (780)
33 3tt9_A Plakophilin-2; cell adh 99.9 5E-23 1.7E-27 195.3 14.8 193 309-502 9-230 (233)
34 2z6g_A B-catenin; FULL-length, 99.9 4.1E-22 1.4E-26 224.0 23.5 276 264-543 358-663 (780)
35 4db6_A Armadillo repeat protei 99.9 1.1E-21 3.9E-26 184.7 21.1 197 347-543 10-209 (210)
36 3opb_A SWI5-dependent HO expre 99.9 1.6E-20 5.5E-25 203.3 23.1 280 266-546 334-686 (778)
37 1xqr_A HSPBP1 protein; armadil 99.8 3.4E-19 1.2E-23 176.1 24.1 236 264-500 26-286 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 4.6E-19 1.6E-23 175.2 22.0 221 322-542 54-286 (296)
39 2kr4_A Ubiquitin conjugation f 99.8 2.7E-20 9.3E-25 147.8 5.8 76 166-242 7-82 (85)
40 2kre_A Ubiquitin conjugation f 99.8 4.2E-20 1.4E-24 151.0 6.9 77 165-242 21-97 (100)
41 2f42_A STIP1 homology and U-bo 99.8 5.1E-20 1.7E-24 165.2 6.6 76 168-243 101-176 (179)
42 1wgm_A Ubiquitin conjugation f 99.8 9.8E-20 3.4E-24 148.3 7.5 78 165-243 14-92 (98)
43 1t1h_A Gspef-atpub14, armadill 99.8 5.2E-19 1.8E-23 138.7 7.0 75 168-242 3-77 (78)
44 2c2l_A CHIP, carboxy terminus 99.7 9.6E-18 3.3E-22 165.5 9.6 78 166-243 201-278 (281)
45 2yu4_A E3 SUMO-protein ligase 99.7 3.4E-17 1.2E-21 132.7 7.0 74 169-242 3-85 (94)
46 3ztg_A E3 ubiquitin-protein li 99.6 1E-15 3.5E-20 123.9 8.4 76 167-242 7-85 (92)
47 3grl_A General vesicular trans 99.6 1.5E-13 5.2E-18 145.3 22.6 276 265-544 20-343 (651)
48 3htk_C E3 SUMO-protein ligase 99.5 3.3E-14 1.1E-18 133.2 11.5 72 168-239 176-251 (267)
49 3fl2_A E3 ubiquitin-protein li 99.5 4.1E-15 1.4E-19 127.4 4.4 71 170-240 49-120 (124)
50 3grl_A General vesicular trans 99.5 4E-12 1.4E-16 134.5 25.2 278 265-542 59-393 (651)
51 1z6u_A NP95-like ring finger p 99.5 1.9E-14 6.5E-19 126.9 4.6 70 170-239 75-145 (150)
52 2bay_A PRE-mRNA splicing facto 99.5 1.5E-14 5E-19 106.3 2.8 55 173-228 3-58 (61)
53 2ecw_A Tripartite motif-contai 99.4 7.4E-14 2.5E-18 111.1 4.8 68 166-233 12-84 (85)
54 2egp_A Tripartite motif-contai 99.4 1.4E-14 4.8E-19 113.6 0.4 66 168-233 7-78 (79)
55 3lrq_A E3 ubiquitin-protein li 99.4 6.8E-14 2.3E-18 114.8 4.5 71 169-239 18-89 (100)
56 3ltm_A Alpha-REP4; protein eng 99.4 1.1E-11 3.8E-16 116.1 19.0 190 264-504 17-206 (211)
57 2ecv_A Tripartite motif-contai 99.4 1.2E-13 4E-18 109.9 4.5 67 167-233 13-84 (85)
58 1oyz_A Hypothetical protein YI 99.4 8.9E-12 3E-16 122.3 18.5 225 266-541 23-248 (280)
59 2y43_A E3 ubiquitin-protein li 99.4 1.4E-13 4.7E-18 112.9 4.6 70 170-240 19-89 (99)
60 3ltm_A Alpha-REP4; protein eng 99.4 1.6E-11 5.6E-16 115.0 19.2 189 307-546 18-206 (211)
61 3hct_A TNF receptor-associated 99.4 1.9E-13 6.5E-18 115.8 4.7 70 167-236 12-81 (118)
62 2ecy_A TNF receptor-associated 99.4 3.6E-13 1.2E-17 101.4 5.7 55 168-222 10-64 (66)
63 3ltj_A Alpharep-4; protein eng 99.4 2.6E-11 8.9E-16 112.7 19.8 186 264-500 12-197 (201)
64 2csy_A Zinc finger protein 183 99.4 3.3E-13 1.1E-17 106.1 5.3 62 168-231 10-71 (81)
65 2yur_A Retinoblastoma-binding 99.4 5.2E-13 1.8E-17 103.0 6.3 54 166-219 8-63 (74)
66 2ckl_A Polycomb group ring fin 99.4 1.9E-13 6.6E-18 113.9 4.1 68 169-237 11-83 (108)
67 3l11_A E3 ubiquitin-protein li 99.4 1.1E-13 3.7E-18 116.8 1.7 70 169-238 11-87 (115)
68 2djb_A Polycomb group ring fin 99.4 1E-12 3.5E-17 100.8 6.9 59 167-226 9-68 (72)
69 4ayc_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 120.4 1.6 64 171-237 51-114 (138)
70 3ltj_A Alpharep-4; protein eng 99.3 7E-11 2.4E-15 109.8 19.8 184 308-542 14-197 (201)
71 2ckl_B Ubiquitin ligase protei 99.3 3.3E-13 1.1E-17 121.6 3.7 70 169-238 50-121 (165)
72 3m62_A Ubiquitin conjugation f 99.3 3.5E-13 1.2E-17 147.6 4.7 74 168-242 886-960 (968)
73 1jm7_B BARD1, BRCA1-associated 99.3 3.8E-13 1.3E-17 113.7 2.9 67 170-239 19-86 (117)
74 1jm7_A BRCA1, breast cancer ty 99.3 1.7E-12 5.8E-17 109.0 5.7 68 171-238 19-88 (112)
75 2ysl_A Tripartite motif-contai 99.3 2E-12 6.8E-17 99.5 5.4 57 167-223 14-72 (73)
76 1g25_A CDK-activating kinase a 99.3 1.7E-12 5.7E-17 97.4 4.2 55 172-226 2-61 (65)
77 2ysj_A Tripartite motif-contai 99.3 5E-12 1.7E-16 94.1 6.2 48 167-214 14-63 (63)
78 1oyz_A Hypothetical protein YI 99.3 3.1E-10 1.1E-14 111.1 19.9 201 304-542 19-220 (280)
79 3knv_A TNF receptor-associated 99.2 1.1E-12 3.7E-17 114.3 1.4 69 168-236 26-103 (141)
80 3hcs_A TNF receptor-associated 99.2 3E-12 1E-16 116.0 4.2 70 167-236 12-81 (170)
81 1rmd_A RAG1; V(D)J recombinati 99.2 2.2E-12 7.5E-17 108.9 3.0 67 169-235 19-86 (116)
82 4fdd_A Transportin-1; heat rep 99.2 8.4E-11 2.9E-15 133.7 16.9 279 266-544 128-472 (852)
83 3ng2_A RNF4, snurf, ring finge 99.2 3.8E-12 1.3E-16 97.3 3.9 58 169-227 6-70 (71)
84 2ct2_A Tripartite motif protei 99.2 2.3E-11 7.9E-16 97.2 6.7 55 167-221 9-69 (88)
85 2ecj_A Tripartite motif-contai 99.2 1.7E-11 5.9E-16 89.5 5.0 47 168-214 10-58 (58)
86 2d8t_A Dactylidin, ring finger 99.2 6.7E-12 2.3E-16 95.9 2.3 52 169-221 11-62 (71)
87 2xeu_A Ring finger protein 4; 99.1 1.5E-11 5.1E-16 91.9 2.6 54 172-226 2-62 (64)
88 2ea6_A Ring finger protein 4; 99.1 3.3E-11 1.1E-15 91.4 4.6 52 168-220 10-68 (69)
89 1e4u_A Transcriptional repress 99.1 5.9E-11 2E-15 91.8 5.4 56 168-223 6-65 (78)
90 4fdd_A Transportin-1; heat rep 99.1 5.4E-10 1.8E-14 127.0 14.7 272 266-542 215-511 (852)
91 2ect_A Ring finger protein 126 99.1 8.2E-11 2.8E-15 91.6 5.2 58 168-226 10-70 (78)
92 1b3u_A Protein (protein phosph 99.1 2.7E-09 9.1E-14 115.5 18.7 264 266-541 164-429 (588)
93 1b3u_A Protein (protein phosph 99.0 1.1E-08 3.7E-13 110.7 19.4 265 266-542 87-352 (588)
94 2vgl_B AP-2 complex subunit be 99.0 8.8E-09 3E-13 112.0 18.7 264 266-542 121-418 (591)
95 2ecm_A Ring finger and CHY zin 99.0 2.5E-10 8.4E-15 82.3 4.2 47 172-219 4-54 (55)
96 1ibr_B P95, importin beta-1 su 99.0 1.6E-09 5.5E-14 113.5 11.8 274 266-545 128-439 (462)
97 1chc_A Equine herpes virus-1 r 99.0 3.3E-10 1.1E-14 85.5 4.4 48 172-220 4-52 (68)
98 2kiz_A E3 ubiquitin-protein li 99.0 8.8E-10 3E-14 83.5 6.6 52 169-221 10-64 (69)
99 4gmo_A Putative uncharacterize 99.0 5.6E-09 1.9E-13 115.4 15.6 195 348-543 33-258 (684)
100 2ecn_A Ring finger protein 141 99.0 1.5E-10 5.2E-15 88.0 2.2 53 168-222 10-62 (70)
101 2ep4_A Ring finger protein 24; 99.0 8.1E-10 2.8E-14 84.9 6.3 53 168-221 10-65 (74)
102 1bor_A Transcription factor PM 98.9 2.3E-10 7.8E-15 82.7 2.5 47 171-221 4-50 (56)
103 1iym_A EL5; ring-H2 finger, ub 98.9 4.1E-10 1.4E-14 81.1 3.7 48 170-218 2-53 (55)
104 2vgl_B AP-2 complex subunit be 98.9 4.1E-09 1.4E-13 114.6 13.1 260 266-544 49-312 (591)
105 2l0b_A E3 ubiquitin-protein li 98.9 6.5E-10 2.2E-14 89.1 4.5 51 169-220 36-89 (91)
106 4ap4_A E3 ubiquitin ligase RNF 98.9 3.7E-10 1.3E-14 97.6 2.5 55 171-226 5-66 (133)
107 1x4j_A Ring finger protein 38; 98.9 8.9E-10 3E-14 84.9 4.3 50 170-220 20-72 (75)
108 4gmo_A Putative uncharacterize 98.9 7.4E-09 2.5E-13 114.4 13.2 192 309-500 35-257 (684)
109 1v87_A Deltex protein 2; ring- 98.9 1.6E-09 5.5E-14 90.9 5.1 49 172-220 24-94 (114)
110 4ic3_A E3 ubiquitin-protein li 98.8 9.6E-10 3.3E-14 84.4 1.2 46 170-220 21-67 (74)
111 2bpt_A Importin beta-1 subunit 98.8 4.3E-08 1.5E-12 111.1 14.2 270 267-543 370-668 (861)
112 2y1n_A E3 ubiquitin-protein li 98.8 3.2E-09 1.1E-13 106.3 4.2 50 173-222 332-381 (389)
113 1w63_A Adapter-related protein 98.7 4.9E-07 1.7E-11 98.7 20.4 252 266-543 142-414 (618)
114 3b2a_A TON_1937, putative unch 98.7 3.2E-07 1.1E-11 84.1 15.2 221 265-495 32-255 (265)
115 1qgr_A Protein (importin beta 98.7 5.1E-07 1.7E-11 102.4 20.3 273 266-544 128-438 (876)
116 1w63_A Adapter-related protein 98.7 8.4E-07 2.9E-11 96.8 21.1 256 267-543 71-379 (618)
117 4ap4_A E3 ubiquitin ligase RNF 98.7 4.2E-09 1.5E-13 90.9 2.1 56 171-227 70-132 (133)
118 2ecg_A Baculoviral IAP repeat- 98.6 7.6E-09 2.6E-13 79.6 2.1 46 171-221 23-69 (75)
119 2ecl_A Ring-box protein 2; RNF 98.6 1.4E-08 4.9E-13 79.2 3.7 48 172-220 14-76 (81)
120 1qgr_A Protein (importin beta 98.6 5.6E-07 1.9E-11 102.1 18.4 275 266-545 172-481 (876)
121 2bpt_A Importin beta-1 subunit 98.6 2.3E-07 7.8E-12 105.1 13.9 272 266-543 411-711 (861)
122 2vje_A E3 ubiquitin-protein li 98.6 3.4E-08 1.2E-12 73.2 3.6 48 171-219 6-56 (64)
123 1ibr_B P95, importin beta-1 su 98.6 3.7E-07 1.3E-11 95.3 12.8 233 266-502 172-438 (462)
124 2vje_B MDM4 protein; proto-onc 98.5 3.6E-08 1.2E-12 72.8 3.2 48 172-220 6-56 (63)
125 1u6g_C TIP120 protein, CAND1; 98.5 1.1E-07 3.7E-12 112.4 8.2 271 266-543 6-284 (1230)
126 3dpl_R Ring-box protein 1; ubi 98.5 6.4E-08 2.2E-12 79.3 4.4 47 172-219 36-100 (106)
127 1wim_A KIAA0161 protein; ring 98.5 2.9E-08 9.8E-13 80.0 2.1 66 172-238 4-83 (94)
128 2qk2_A LP04448P; mini spindles 98.5 7.5E-07 2.6E-11 85.0 10.9 183 270-461 19-206 (242)
129 2yho_A E3 ubiquitin-protein li 98.4 3.9E-08 1.3E-12 76.2 0.5 46 171-221 16-62 (79)
130 2qk2_A LP04448P; mini spindles 98.4 1.9E-06 6.4E-11 82.2 11.9 184 352-543 18-205 (242)
131 2vgl_A Adaptor protein complex 98.4 2.9E-05 1E-09 84.5 22.4 255 266-543 146-433 (621)
132 2ea5_A Cell growth regulator w 98.4 3.6E-07 1.2E-11 68.4 4.6 45 171-220 13-58 (68)
133 1u6g_C TIP120 protein, CAND1; 98.3 1.8E-06 6.2E-11 101.9 12.7 230 265-503 47-286 (1230)
134 2d8s_A Cellular modulator of i 98.3 6.3E-07 2.2E-11 69.3 5.4 53 169-221 11-71 (80)
135 3t6p_A Baculoviral IAP repeat- 98.3 9.6E-08 3.3E-12 95.2 1.0 46 170-220 292-338 (345)
136 3b2a_A TON_1937, putative unch 98.3 1.1E-05 3.8E-10 74.0 14.0 223 308-542 33-260 (265)
137 2vgl_A Adaptor protein complex 98.3 5.7E-05 1.9E-09 82.2 22.2 255 266-543 111-398 (621)
138 1te4_A Conserved protein MTH18 98.3 1.4E-07 4.9E-12 80.9 0.9 120 307-457 11-130 (131)
139 1te4_A Conserved protein MTH18 98.3 1.1E-07 3.7E-12 81.7 -0.2 120 266-417 12-131 (131)
140 2qk1_A Protein STU2; STU2P, XM 98.2 2.6E-06 8.8E-11 81.7 8.5 191 270-461 20-221 (249)
141 4a0k_B E3 ubiquitin-protein li 98.2 2.2E-07 7.5E-12 77.2 0.3 46 173-219 48-111 (117)
142 1ho8_A Vacuolar ATP synthase s 98.1 9.2E-05 3.1E-09 75.9 17.8 264 276-542 135-475 (480)
143 2qk1_A Protein STU2; STU2P, XM 98.1 1.5E-05 5E-10 76.4 11.0 190 353-543 20-220 (249)
144 2db0_A 253AA long hypothetical 98.0 0.0013 4.5E-08 58.0 20.1 213 307-542 31-245 (253)
145 2iw3_A Elongation factor 3A; a 98.0 0.00046 1.6E-08 77.6 21.8 266 265-547 53-328 (986)
146 3dad_A FH1/FH2 domain-containi 97.9 0.00032 1.1E-08 68.4 17.1 183 352-534 121-327 (339)
147 3tjz_B Coatomer subunit gamma; 97.9 0.00015 5.2E-09 72.5 14.9 245 267-543 69-316 (355)
148 3dad_A FH1/FH2 domain-containi 97.8 0.00024 8E-09 69.4 14.2 148 394-541 122-284 (339)
149 1ho8_A Vacuolar ATP synthase s 97.8 0.0002 6.7E-09 73.5 14.1 230 270-501 171-476 (480)
150 3tjz_B Coatomer subunit gamma; 97.8 0.00022 7.4E-09 71.4 13.9 264 224-535 79-345 (355)
151 4ady_A RPN2, 26S proteasome re 97.7 0.0025 8.6E-08 71.0 22.1 234 267-542 430-675 (963)
152 2db0_A 253AA long hypothetical 97.6 0.032 1.1E-06 49.3 22.9 215 264-501 30-246 (253)
153 2ct0_A Non-SMC element 1 homol 97.6 5.6E-05 1.9E-09 57.0 4.5 48 173-220 15-64 (74)
154 1vyx_A ORF K3, K3RING; zinc-bi 97.5 9.3E-05 3.2E-09 53.5 4.6 48 172-219 5-58 (60)
155 3vk6_A E3 ubiquitin-protein li 97.4 6.3E-05 2.2E-09 59.0 2.8 46 175-220 3-49 (101)
156 2iw3_A Elongation factor 3A; a 97.2 0.0048 1.6E-07 69.5 15.9 259 266-543 14-280 (986)
157 4ady_A RPN2, 26S proteasome re 97.2 0.083 2.9E-06 59.0 25.2 241 265-541 471-717 (963)
158 4ffb_C Protein STU2; tubulin f 97.0 0.0094 3.2E-07 57.5 14.3 186 271-461 14-213 (278)
159 3k1l_B Fancl; UBC, ring, RWD, 97.0 0.00012 4E-09 71.1 0.5 49 172-220 307-373 (381)
160 3oc3_A Helicase MOT1, MOT1; re 97.0 0.0024 8.3E-08 65.9 9.9 242 267-539 175-432 (800)
161 2fv2_A RCD1 required for cell 96.7 0.11 3.9E-06 48.4 17.4 227 267-499 4-266 (268)
162 1wa5_C Importin alpha RE-expor 96.6 0.063 2.2E-06 61.3 18.9 252 282-543 377-670 (960)
163 2fv2_A RCD1 required for cell 96.5 0.074 2.5E-06 49.6 15.1 143 403-545 14-176 (268)
164 2of3_A ZYG-9; multifunctional 96.5 0.06 2E-06 51.2 14.7 180 270-461 50-237 (266)
165 1wa5_C Importin alpha RE-expor 96.0 0.25 8.7E-06 56.3 19.8 218 277-500 416-669 (960)
166 4ffb_C Protein STU2; tubulin f 95.9 0.059 2E-06 51.8 11.9 187 351-544 12-213 (278)
167 1upk_A MO25 protein; transfera 95.8 0.15 5.2E-06 49.6 14.1 197 266-464 78-287 (341)
168 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0061 2.1E-07 49.0 2.1 33 172-204 2-37 (101)
169 3ebb_A Phospholipase A2-activa 95.2 0.37 1.3E-05 46.8 14.5 136 403-540 161-303 (304)
170 1lrv_A LRV, leucine-rich repea 94.7 0.015 5.2E-07 54.8 3.0 67 436-538 175-241 (244)
171 2x1g_F Cadmus; transport prote 94.7 2.6 9E-05 47.8 22.4 173 361-543 476-663 (971)
172 3nw0_A Non-structural maintena 94.6 0.024 8.3E-07 53.1 4.2 49 173-221 180-230 (238)
173 3i2d_A E3 SUMO-protein ligase 94.5 0.03 1E-06 55.3 4.6 64 172-235 248-315 (371)
174 2x1g_F Cadmus; transport prote 94.3 3.8 0.00013 46.5 22.5 212 320-544 476-723 (971)
175 1upk_A MO25 protein; transfera 94.3 3 0.0001 40.5 18.1 155 386-541 74-236 (341)
176 3ebb_A Phospholipase A2-activa 94.2 0.49 1.7E-05 46.0 12.7 163 266-430 103-274 (304)
177 2f31_A Diaphanous protein homo 94.0 2 6.9E-05 39.8 16.0 175 271-446 5-214 (233)
178 2x19_B Importin-13; nuclear tr 93.7 1 3.5E-05 51.2 16.2 135 276-421 459-601 (963)
179 4fo9_A E3 SUMO-protein ligase 93.7 0.053 1.8E-06 53.4 4.6 65 171-235 213-281 (360)
180 3eg5_B Protein diaphanous homo 93.0 3.5 0.00012 41.3 17.0 172 269-442 69-275 (383)
181 2of3_A ZYG-9; multifunctional 92.9 0.66 2.3E-05 44.0 10.8 178 351-541 48-234 (266)
182 3u0r_A Apoptosis inhibitor 5; 92.6 4.1 0.00014 41.6 16.5 132 266-416 29-160 (507)
183 2x19_B Importin-13; nuclear tr 92.5 3.1 0.00011 47.1 18.0 175 359-543 459-646 (963)
184 3oc3_A Helicase MOT1, MOT1; re 92.2 0.13 4.4E-06 53.5 5.0 186 280-496 242-431 (800)
185 2bnx_A Diaphanous protein homo 91.5 5.1 0.00017 40.2 16.1 177 270-447 8-219 (386)
186 2f31_A Diaphanous protein homo 91.2 2.2 7.6E-05 39.5 12.2 142 347-489 41-216 (233)
187 1lrv_A LRV, leucine-rich repea 89.9 0.12 4.2E-06 48.6 2.1 20 353-372 150-169 (244)
188 4hat_C Exportin-1; heat repeat 89.8 2.5 8.6E-05 48.3 13.3 139 320-461 465-619 (1023)
189 4hat_C Exportin-1; heat repeat 89.7 1.1 3.7E-05 51.3 10.2 142 278-422 465-621 (1023)
190 3eg5_B Protein diaphanous homo 88.9 5.9 0.0002 39.7 13.9 135 348-483 108-275 (383)
191 3ibv_A Exportin-T; karyopherin 87.8 16 0.00056 41.4 18.2 204 279-503 21-262 (980)
192 1lsh_A Lipovitellin (LV-1N, LV 87.7 18 0.00061 41.5 18.6 200 267-498 312-540 (1056)
193 1weo_A Cellulose synthase, cat 87.1 1.1 3.8E-05 34.0 5.3 48 172-219 15-69 (93)
194 3u0r_A Apoptosis inhibitor 5; 86.7 7.2 0.00025 39.8 12.7 129 392-539 31-159 (507)
195 2bnx_A Diaphanous protein homo 86.5 6.7 0.00023 39.3 12.6 140 348-488 46-219 (386)
196 3ibv_A Exportin-T; karyopherin 86.1 42 0.0014 38.0 20.3 284 226-542 21-360 (980)
197 3m1i_C Exportin-1; heat repeat 84.6 8.4 0.00029 44.1 13.9 189 308-502 344-570 (1049)
198 3c2g_A SYS-1 protein; beta-cat 83.8 27 0.00092 34.1 14.4 127 414-541 266-401 (619)
199 3m1i_C Exportin-1; heat repeat 83.8 15 0.00052 42.0 15.6 220 266-502 16-264 (1049)
200 3l9t_A Putative uncharacterize 83.7 8.1 0.00028 35.6 10.5 144 351-513 73-219 (240)
201 3qml_C Protein SLS1, nucleotid 83.5 14 0.00049 35.3 12.4 145 351-500 24-188 (315)
202 3c2g_A SYS-1 protein; beta-cat 81.6 25 0.00085 34.3 13.2 109 290-401 266-378 (619)
203 1lsh_A Lipovitellin (LV-1N, LV 81.4 53 0.0018 37.5 18.7 165 309-503 392-578 (1056)
204 3qml_C Protein SLS1, nucleotid 80.3 14 0.00047 35.4 11.0 148 390-543 22-189 (315)
205 3gjx_A Exportin-1; transport, 77.6 26 0.0009 40.0 14.4 220 264-502 26-276 (1073)
206 3l9t_A Putative uncharacterize 77.3 19 0.00064 33.2 10.6 140 266-425 70-213 (240)
207 1x5b_A Signal transducing adap 75.6 8.2 0.00028 33.4 7.5 72 265-336 51-124 (163)
208 3a6p_A Exportin-5; exportin-5, 75.1 60 0.0021 37.7 16.9 214 268-503 13-278 (1204)
209 1mhq_A ADP-ribosylation factor 74.9 9.8 0.00033 32.4 7.7 73 265-337 37-116 (148)
210 2ko5_A Ring finger protein Z; 73.1 2.6 9E-05 32.4 3.1 52 169-222 24-75 (99)
211 1x5b_A Signal transducing adap 71.5 12 0.00039 32.5 7.5 71 473-543 53-125 (163)
212 3ldz_A STAM-1, signal transduc 71.3 9.6 0.00033 32.1 6.7 72 265-336 41-113 (140)
213 1juq_A ADP-ribosylation factor 70.7 11 0.00036 33.0 7.1 73 265-337 49-128 (171)
214 2cs3_A Protein C14ORF4, MY039 70.5 6.9 0.00024 29.0 4.7 37 170-206 12-52 (93)
215 3mjh_B Early endosome antigen 70.2 0.89 3E-05 28.1 -0.0 17 172-188 4-20 (34)
216 3ldz_A STAM-1, signal transduc 68.5 14 0.00049 31.0 7.2 71 473-543 43-114 (140)
217 1mhq_A ADP-ribosylation factor 66.0 13 0.00043 31.6 6.4 71 473-543 39-116 (148)
218 1juq_A ADP-ribosylation factor 65.7 12 0.00042 32.6 6.4 71 473-543 51-128 (171)
219 3g2s_A C-terminal fragment of 63.1 26 0.00089 29.7 7.8 73 265-337 47-126 (149)
220 2k5c_A Uncharacterized protein 63.0 4.7 0.00016 29.9 2.6 54 174-227 9-70 (95)
221 3a6p_A Exportin-5; exportin-5, 62.7 2.2E+02 0.0076 32.8 19.4 248 276-536 57-373 (1204)
222 1m3v_A FLIN4, fusion of the LI 60.5 4.7 0.00016 33.0 2.6 51 172-223 31-84 (122)
223 2o35_A Hypothetical protein DU 59.8 3.8 0.00013 31.8 1.7 13 194-206 42-54 (105)
224 2jvx_A NF-kappa-B essential mo 59.6 2.4 8.1E-05 24.9 0.4 15 172-186 2-16 (28)
225 3fyb_A Protein of unknown func 59.1 4 0.00014 31.6 1.7 13 194-206 41-53 (104)
226 1vdy_A Hypothetical protein (R 58.2 11 0.00036 31.8 4.4 74 473-546 50-133 (140)
227 3g2s_A C-terminal fragment of 57.8 28 0.00095 29.6 7.0 71 473-543 49-126 (149)
228 2xqn_T Testin, TESS; metal-bin 55.3 6.3 0.00021 32.3 2.5 47 171-220 28-75 (126)
229 3gae_A Protein DOA1; UFD3, CDC 55.2 14 0.00048 34.5 5.2 130 283-422 71-220 (253)
230 3lay_A Zinc resistance-associa 53.4 18 0.00061 31.7 5.2 58 46-103 66-123 (175)
231 1dvp_A HRS, hepatocyte growth 52.6 25 0.00084 32.0 6.4 72 265-336 41-114 (220)
232 3zyq_A Hepatocyte growth facto 51.9 26 0.0009 32.0 6.4 73 265-337 44-118 (226)
233 3gae_A Protein DOA1; UFD3, CDC 51.4 9.4 0.00032 35.7 3.3 130 401-536 101-251 (253)
234 3zyq_A Hepatocyte growth facto 50.7 28 0.00095 31.8 6.4 71 473-543 46-118 (226)
235 1elk_A Target of MYB1; superhe 50.6 46 0.0016 28.4 7.4 72 265-336 52-129 (157)
236 1x61_A Thyroid receptor intera 49.5 21 0.00073 25.5 4.4 36 171-206 31-67 (72)
237 1dvp_A HRS, hepatocyte growth 49.1 40 0.0014 30.6 7.2 71 473-543 43-115 (220)
238 3o2t_A Symplekin; heat repeat, 48.6 1.4E+02 0.0048 29.6 11.4 186 266-460 25-256 (386)
239 3o2t_A Symplekin; heat repeat, 48.4 90 0.0031 31.0 10.0 108 389-500 62-182 (386)
240 2xjy_A Rhombotin-2; oncoprotei 48.2 15 0.0005 30.2 3.7 49 171-220 27-78 (131)
241 3gjx_A Exportin-1; transport, 47.4 32 0.0011 39.4 7.4 139 278-421 491-646 (1073)
242 2rgt_A Fusion of LIM/homeobox 47.0 23 0.00079 30.6 5.0 48 171-221 31-78 (169)
243 3pst_A Protein DOA1; protein d 45.0 39 0.0013 34.0 6.8 103 317-422 271-392 (425)
244 2jtn_A LIM domain-binding prot 44.9 23 0.00078 31.0 4.7 48 171-221 85-132 (182)
245 1rut_X Flinc4, fusion protein 44.1 7.3 0.00025 34.6 1.2 49 171-220 30-81 (188)
246 6rxn_A Rubredoxin; electron tr 43.2 7.6 0.00026 25.8 0.9 14 168-181 25-38 (46)
247 3pst_A Protein DOA1; protein d 43.1 1.5E+02 0.0051 29.7 10.7 132 401-536 273-423 (425)
248 3gs3_A Symplekin, LD45768P; he 43.1 2.1E+02 0.007 26.5 18.7 144 266-417 15-171 (257)
249 3gs3_A Symplekin, LD45768P; he 42.8 2.1E+02 0.0071 26.5 12.0 130 405-542 30-172 (257)
250 3l3f_X Protein DOA1, DOA1/UFD3 41.1 43 0.0015 32.9 6.3 130 283-421 180-328 (362)
251 2kkx_A Uncharacterized protein 39.7 29 0.00097 27.0 3.7 51 170-221 24-80 (102)
252 1e8j_A Rubredoxin; iron-sulfur 39.5 11 0.00038 25.7 1.3 15 167-181 30-44 (52)
253 2jne_A Hypothetical protein YF 39.4 0.9 3.1E-05 35.1 -4.6 41 174-220 33-73 (101)
254 1iml_A CRIP, cysteine rich int 38.3 26 0.00087 25.5 3.3 45 171-218 25-71 (76)
255 4rxn_A Rubredoxin; electron tr 37.6 10 0.00035 26.1 0.9 14 168-181 31-44 (54)
256 2d8x_A Protein pinch; LIM doma 37.3 25 0.00085 25.0 3.1 35 171-205 29-64 (70)
257 3l3f_X Protein DOA1, DOA1/UFD3 35.9 1.2E+02 0.0041 29.8 8.5 132 401-536 210-360 (362)
258 2cup_A Skeletal muscle LIM-pro 35.3 25 0.00087 27.1 3.1 47 171-220 31-78 (101)
259 1elk_A Target of MYB1; superhe 35.1 87 0.003 26.6 6.7 71 473-543 54-130 (157)
260 2l4z_A DNA endonuclease RBBP8, 35.0 22 0.00075 29.0 2.7 38 173-219 61-99 (123)
261 2kn9_A Rubredoxin; metalloprot 34.4 14 0.00049 27.7 1.3 14 168-181 55-68 (81)
262 2d8z_A Four and A half LIM dom 33.2 32 0.0011 24.4 3.1 34 171-204 29-63 (70)
263 1yk4_A Rubredoxin, RD; electro 33.0 13 0.00046 25.3 0.9 14 168-181 30-43 (52)
264 1wig_A KIAA1808 protein; LIM d 33.0 21 0.00072 25.9 2.1 35 171-205 29-65 (73)
265 2v3b_B Rubredoxin 2, rubredoxi 32.3 14 0.00047 25.5 0.8 14 168-181 31-44 (55)
266 2dar_A PDZ and LIM domain prot 32.3 32 0.0011 26.0 3.1 37 175-220 27-63 (90)
267 1x62_A C-terminal LIM domain p 31.5 41 0.0014 24.6 3.5 41 170-219 12-52 (79)
268 3uk3_C Zinc finger protein 217 31.4 16 0.00056 24.2 1.1 41 173-220 4-44 (57)
269 1nyp_A Pinch protein; LIM doma 31.2 26 0.00089 24.6 2.3 33 171-203 29-62 (66)
270 2cur_A Skeletal muscle LIM-pro 31.0 44 0.0015 23.6 3.5 35 171-205 29-64 (69)
271 3vhs_A ATPase wrnip1; zinc fin 30.4 12 0.00042 21.0 0.2 13 173-185 6-18 (29)
272 4atg_A TAF6; transcription, TF 30.2 1.4E+02 0.0047 26.5 7.2 128 390-524 40-178 (196)
273 1erd_A Pheromone ER-2; NMR {Eu 30.1 7.5 0.00026 23.4 -0.7 28 189-216 10-39 (40)
274 1dx8_A Rubredoxin; electron tr 29.2 17 0.00057 26.5 0.9 14 168-181 35-48 (70)
275 1x6a_A LIMK-2, LIM domain kina 28.9 50 0.0017 24.2 3.6 35 171-205 39-76 (81)
276 2jrp_A Putative cytoplasmic pr 28.8 2.7 9.1E-05 31.6 -3.5 41 174-220 3-43 (81)
277 2dj7_A Actin-binding LIM prote 28.7 26 0.00088 26.0 1.9 28 174-201 43-70 (80)
278 1b8t_A Protein (CRP1); LIM dom 28.7 36 0.0012 30.0 3.3 35 171-205 32-67 (192)
279 3ttc_A HYPF, transcriptional r 28.3 25 0.00087 37.6 2.4 52 167-218 11-99 (657)
280 2cor_A Pinch protein; LIM doma 28.1 21 0.00073 26.3 1.3 30 172-201 40-69 (79)
281 4g9i_A Hydrogenase maturation 28.1 37 0.0013 37.2 3.7 52 168-219 101-189 (772)
282 2lri_C Autoimmune regulator; Z 27.9 51 0.0017 23.5 3.3 44 172-217 11-59 (66)
283 2xpp_A IWS1, ECU08_0440; trans 27.9 2.7E+02 0.0091 23.3 8.9 80 416-498 46-133 (145)
284 1x64_A Alpha-actinin-2 associa 27.4 32 0.0011 25.9 2.3 43 170-221 22-64 (89)
285 3vld_A DNA mismatch repair pro 27.2 4.4E+02 0.015 26.8 11.1 106 351-461 118-226 (500)
286 1s24_A Rubredoxin 2; electron 26.0 21 0.00071 27.2 0.9 14 168-181 63-76 (87)
287 2dar_A PDZ and LIM domain prot 25.9 37 0.0013 25.6 2.4 35 171-205 49-84 (90)
288 1wyh_A SLIM 2, skeletal muscle 25.3 42 0.0014 23.8 2.5 34 171-204 31-65 (72)
289 2xpp_A IWS1, ECU08_0440; trans 25.1 3E+02 0.01 23.0 10.1 80 460-543 49-136 (145)
290 1j2o_A FLIN2, fusion of rhombo 25.0 64 0.0022 25.6 3.8 36 171-206 28-66 (114)
291 3vth_A Hydrogenase maturation 24.9 36 0.0012 37.2 2.9 53 167-219 105-194 (761)
292 2eps_A POZ-, at HOOK-, and zin 24.5 1.4E+02 0.0048 19.3 5.0 39 171-220 10-53 (54)
293 1x62_A C-terminal LIM domain p 24.1 36 0.0012 25.0 2.0 35 171-205 39-74 (79)
294 2cor_A Pinch protein; LIM doma 24.1 81 0.0028 23.0 4.0 41 173-222 15-55 (79)
295 1z60_A TFIIH basal transcripti 23.9 45 0.0015 23.3 2.2 39 175-214 17-58 (59)
296 1vsy_5 Proteasome activator BL 23.5 1.4E+02 0.0049 33.6 7.6 182 310-502 135-366 (997)
297 2lcq_A Putative toxin VAPC6; P 23.3 16 0.00054 31.6 -0.2 10 209-218 149-158 (165)
298 1sz9_A PCF11 protein; RNA poly 23.2 2.3E+02 0.0078 23.5 7.1 70 473-542 44-113 (144)
299 2fiy_A Protein FDHE homolog; F 23.2 6.4 0.00022 38.0 -3.0 46 171-217 180-231 (309)
300 2lv2_A Insulinoma-associated p 22.9 75 0.0026 23.7 3.6 39 171-220 26-68 (85)
301 1x64_A Alpha-actinin-2 associa 22.7 96 0.0033 23.1 4.3 35 171-205 49-84 (89)
302 1bbo_A Human enhancer-binding 22.7 17 0.0006 24.1 -0.1 36 174-220 2-41 (57)
303 2kdx_A HYPA, hydrogenase/ureas 21.7 29 0.00099 28.1 1.1 30 169-217 69-99 (119)
304 2l3k_A Rhombotin-2, linker, LI 21.7 60 0.002 26.2 3.1 36 171-206 34-71 (123)
305 1wil_A KIAA1045 protein; ring 21.5 98 0.0033 23.3 3.7 35 168-203 10-47 (89)
306 1x3h_A Leupaxin; paxillin fami 21.3 84 0.0029 22.8 3.6 33 172-204 40-73 (80)
307 4gzn_C ZFP-57, zinc finger pro 21.2 25 0.00087 24.4 0.5 37 173-220 4-44 (60)
308 2k16_A Transcription initiatio 20.7 21 0.00072 26.2 0.0 49 171-219 16-70 (75)
309 1vdy_A Hypothetical protein (R 20.7 2.8E+02 0.0094 23.0 6.9 69 265-336 48-129 (140)
310 3pwf_A Rubrerythrin; non heme 20.6 32 0.0011 29.9 1.2 29 171-219 136-164 (170)
311 4atg_A TAF6; transcription, TF 20.4 1.3E+02 0.0046 26.5 5.3 127 350-482 41-178 (196)
312 1x4k_A Skeletal muscle LIM-pro 20.3 60 0.002 23.0 2.5 34 171-204 31-65 (72)
313 2gqj_A Zinc finger protein KIA 20.2 41 0.0014 25.6 1.6 42 172-220 23-66 (98)
314 1x4l_A Skeletal muscle LIM-pro 20.2 68 0.0023 22.7 2.8 30 172-201 34-64 (72)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=1.6e-31 Score=271.45 Aligned_cols=263 Identities=22% Similarity=0.263 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHhcccCCC-chHHHhh-
Q 008835 281 EEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLSINDS-NKGTIVN- 347 (551)
Q Consensus 281 ~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~~-~~~~i~~- 347 (551)
..+.+|++.|.+++. ++++|..+.+.|++|+|+.+|.. .++.+|+.|+++|.||+.+++ +|..+..
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456689999999997 58999999999999999999952 247799999999999998754 7777754
Q ss_pred cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cchhHHhhhhCcHHHHHHHh-ccCChhHHHHHHHHHHHhcc-CCCh
Q 008835 348 AGAIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSI-YQGN 423 (551)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~~ 423 (551)
.|+|+.|+++|+++++++++.|+++|.||+.. ++++..+.+.|+||+|+++| ++++..+++.|+.+|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 56699999999999999999999999999985 46889999999999999975 66788999999999999999 5578
Q ss_pred HHHHH-HcCChHHHHHhhccCCh----hhHHHHHHHHHHHhc----ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHH
Q 008835 424 KARAV-RAGIVPPLMRFLKDAGG----GMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAA 494 (551)
Q Consensus 424 ~~~l~-~~g~i~~Lv~lL~~~~~----~~~~~al~~L~nL~~----~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~ 494 (551)
+..++ ..|+++.|+.+|.+.++ .+++.|+++|.||+. .++++..+.+.|+++.|+.+|++++..+++.|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 88888 78999999999987554 489999999999996 7889999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 495 VLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 495 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
+|.||+.++++.+..+.+.|+++.|+.++.++++++++.|.++|++|...
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999988889999999999999999999999999999999999999865
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=5.1e-31 Score=278.92 Aligned_cols=278 Identities=21% Similarity=0.267 Sum_probs=243.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTI 345 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i 345 (551)
.++.|+.+|++++++.|..|++.|++++.+++.++..+++.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 588999999999999999999999999988888898999999999999999999999999999999999986 8899999
Q ss_pred hhcCCcHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhc--------cC--------ChhHHH
Q 008835 346 VNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC--------DG--------TPRGKK 408 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~--------~~--------~~~~~~ 408 (551)
++.|+++.|+++|+ ++++++++.|+|+|+||+..++++..+.+ |++|+|+.+|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889999998 99999999993 22 345667
Q ss_pred HHHHHHHHhccCCChHHHHHHc-CChHHHHHhhcc------CChhhHHHHHHHHHHHhcC--------------------
Q 008835 409 DAATAIFNLSIYQGNKARAVRA-GIVPPLMRFLKD------AGGGMVDEALAILAILASH-------------------- 461 (551)
Q Consensus 409 ~a~~aL~nL~~~~~~~~~l~~~-g~i~~Lv~lL~~------~~~~~~~~al~~L~nL~~~-------------------- 461 (551)
.|+++|+||+.+++++..+++. |+++.|+.+|.+ .+..+++.|+.+|.||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999997788889987 999999999985 4667899999999999742
Q ss_pred -------------------------------hhhHHHhhhCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCHH----
Q 008835 462 -------------------------------QEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDAE---- 505 (551)
Q Consensus 462 -------------------------------~~~~~~i~~~~~v~~L~~lL~~~-~~~~k~~A~~~L~~L~~~~~~---- 505 (551)
+.+.+.+++.|+++.|+.+|.++ ++.+++.|+++|.|||.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 12334455667899999999865 589999999999999986532
Q ss_pred HHHHH-HHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 506 QLKIA-RELDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 506 ~~~~~-~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
..+.+ .+.|+++.|+.++.+++.++++.|.++|++|....
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 21334 46899999999999999999999999999997643
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=5.3e-30 Score=273.74 Aligned_cols=279 Identities=22% Similarity=0.278 Sum_probs=242.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC--CCch
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN--DSNK 342 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~ 342 (551)
.+.++.|+.+|.+++++.|..|++.|.+++..+.++|..+++.|+||.|+.+|.+++..+|+.|+++|.||+.+ +++|
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 36799999999999999999999999999998999999999999999999999999999999999999999984 7899
Q ss_pred HHHhhcCCcHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhc------------------cCC
Q 008835 343 GTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC------------------DGT 403 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~------------------~~~ 403 (551)
..|++.|+|+.|+++|++ ++.+++++|+++|++||..++++..|.. +++|+|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999998 5789999999999999999999999995 57999999872 124
Q ss_pred hhHHHHHHHHHHHhccCCCh-HHHHHHc-CChHHHHHhhcc------CChhhHHHHHHHHHHHhcChh------------
Q 008835 404 PRGKKDAATAIFNLSIYQGN-KARAVRA-GIVPPLMRFLKD------AGGGMVDEALAILAILASHQE------------ 463 (551)
Q Consensus 404 ~~~~~~a~~aL~nL~~~~~~-~~~l~~~-g~i~~Lv~lL~~------~~~~~~~~al~~L~nL~~~~~------------ 463 (551)
..+++.|+++|.||+...++ +..+++. |+++.|+.+|.+ .+...++.|+++|+||+...+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 68999999999999997754 8888885 667899999975 466789999999999997521
Q ss_pred --------------hHHHhhhCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCH----HHHHHHHHcCcHHHHHHHhh
Q 008835 464 --------------GKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDA----EQLKIARELDAEEALKELSE 524 (551)
Q Consensus 464 --------------~~~~i~~~~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~~----~~~~~~~~~g~i~~L~~ll~ 524 (551)
+...+.+.++++.|+.+|+. .++.+++.|+++|.|||.++. .....+.++|+++.|+.|+.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 22233344567888999975 569999999999999998762 22334556789999999999
Q ss_pred hCChHHHHHHHHHHHHHHhH
Q 008835 525 SGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 525 ~~~~~~k~~A~~lL~~l~~~ 544 (551)
++++++++.|.++|++|...
T Consensus 366 s~~~~v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVD 385 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999764
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=271.21 Aligned_cols=262 Identities=22% Similarity=0.257 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHhcccCCC-chHHHh-hcC
Q 008835 283 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLSINDS-NKGTIV-NAG 349 (551)
Q Consensus 283 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~~-~~~~i~-~~g 349 (551)
+.+|++.|.+++. ++++|..+.+.|++++|+.+|.. .++.++++|+++|.||+.+++ ++..+. ..|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 4589999999986 68999999999999999999952 347799999999999998755 666665 456
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cchhHHhhhhCcHHHHHHHh-ccCChhHHHHHHHHHHHhcc-CCChHH
Q 008835 350 AIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSI-YQGNKA 425 (551)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~~~~ 425 (551)
+|+.|+.+|++++++++..|+++|.||+.. ++++..+.+.|++|+|+++| .+++..+++.|+.+|+||+. .++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 799999999999999999999999999985 46889999999999999975 56788999999999999999 668888
Q ss_pred HHH-HcCChHHHHHhhccCCh----hhHHHHHHHHHHHhc----ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 008835 426 RAV-RAGIVPPLMRFLKDAGG----GMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 496 (551)
Q Consensus 426 ~l~-~~g~i~~Lv~lL~~~~~----~~~~~al~~L~nL~~----~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L 496 (551)
.++ ..|+++.|+.+|.+.++ .+++.|+++|.||+. +++++..+.+.|+++.|+.+|.+++..+++.|+++|
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 888 78999999999987554 389999999999995 788999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 497 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 497 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
.||+.++++.+..+++.|+++.|+.++.++++++++.|.++|++|....
T Consensus 404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999888999999999999999999999999999999999999998643
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.7e-29 Score=267.31 Aligned_cols=285 Identities=20% Similarity=0.221 Sum_probs=248.2
Q ss_pred cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHhcccCCC
Q 008835 262 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 262 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~ 340 (551)
..+.++++.|+.+|++++++.|..|++.|++++..+++++..+++.|+||.|+++|. ++++++++.|+++|.||+.+++
T Consensus 40 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~ 119 (457)
T 1xm9_A 40 VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119 (457)
T ss_dssp HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH
Confidence 345689999999999999999999999999999988999999999999999999999 8899999999999999999988
Q ss_pred chHHHhhcCCcHHHHHHHh--------cC--------CHHHHHHHHHHHHHhcCCcchhHHhhhh-CcHHHHHHHhccC-
Q 008835 341 NKGTIVNAGAIPDIVDVLK--------NG--------SMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDG- 402 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~--------~~--------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-~~i~~Lv~lL~~~- 402 (551)
+|..+++ |+++.|+++|. ++ +.++..+|+|+|+||+..++++..+.+. |++++|+.+|.++
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 9999999 99999999993 22 3456669999999999988888899887 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 008835 403 -------------------------------------------------------------------------------- 402 (551)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (551)
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence
Q ss_pred ------------------ChhHHHHHHHHHHHhccCCChH-----HHHH-HcCChHHHHHhhccCChhhHHHHHHHHHHH
Q 008835 403 ------------------TPRGKKDAATAIFNLSIYQGNK-----ARAV-RAGIVPPLMRFLKDAGGGMVDEALAILAIL 458 (551)
Q Consensus 403 ------------------~~~~~~~a~~aL~nL~~~~~~~-----~~l~-~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL 458 (551)
++.+++.|+++|.||+...... ..++ +.|+++.|+++|.+++..++..|+++|.||
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 2345566889999999865432 1233 689999999999999999999999999999
Q ss_pred hcChhhHHHhhhCCCHHHHHHHHhcCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC-ChHHH
Q 008835 459 ASHQEGKTAIGQAEPIPVLMEVIRTGS------PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAK 531 (551)
Q Consensus 459 ~~~~~~~~~i~~~~~v~~L~~lL~~~~------~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k 531 (551)
+.++..+..+.. |+++.|+++|..++ +++...++.+|.++..+++.....+.+.|+++.|+.++.++ +++++
T Consensus 359 s~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 359 SRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp HTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred hcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 999887776654 79999999999764 35778899999999998889999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhHHHhh
Q 008835 532 RKAGSILELLQRIDMAV 548 (551)
Q Consensus 532 ~~A~~lL~~l~~~~~~~ 548 (551)
++|.++|.++..+.+..
T Consensus 438 ~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 438 EAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHcchhhh
Confidence 99999999987665543
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=2.4e-29 Score=277.27 Aligned_cols=281 Identities=15% Similarity=0.159 Sum_probs=252.4
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-----------------------------hhH---HHHHhcCCHH
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-----------------------------DNR---VCIAEAGAIP 311 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-----------------------------~~r---~~i~~~g~i~ 311 (551)
+.+.++.|+.+|+++++..+..|++.|.|++...+ ..+ ..+++.|+||
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 56899999999999999999999999999997542 123 6788999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh---h
Q 008835 312 LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG---A 388 (551)
Q Consensus 312 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~---~ 388 (551)
.|+.+|+++++.+|+.|+|+|.||+.++++|..+++.|++++|+.+|+++++..++.|+|+|.+|+...+....+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999988899999999999999999999999999999999999987654433332 1
Q ss_pred hCcHHHHHHHhccC-ChhHHHHHHHHHHHhccCC-ChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH
Q 008835 389 AGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 466 (551)
Q Consensus 389 ~~~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~ 466 (551)
.+++|+|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.+|.+.++.++..|+.+|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 47999999999865 3445678999999999975 567789999999999999999999999999999999999999888
Q ss_pred Hhhh-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 467 AIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE-LDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 467 ~i~~-~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
.+.+ .|+++.|+.++.+++..+|+.|+++|.+|+.+++..++.+++ .|+++.|+.++.+++..+++.|.++|.++...
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 8885 689999999999999999999999999999988888899998 89999999999999999999999999999753
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.96 E-value=1e-28 Score=265.02 Aligned_cols=281 Identities=20% Similarity=0.241 Sum_probs=253.5
Q ss_pred ccHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CC
Q 008835 263 CDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DS 340 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~ 340 (551)
.+.|.++.|+++|++ ++++.|..|+++|.+++.++++++..+++.|+||.|+.+|++++..+++.|+++|+||+.+ +.
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 455899999999974 4589999999999999999999999999999999999999999999999999999999987 45
Q ss_pred chHHHhhcCCcHHHHHHHhcCC-----HHHHHHHHHHHHHhcCCcchhHHh-hhhCcHHHHHHHhccCChhHHHHHHHHH
Q 008835 341 NKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVIDENKVAI-GAAGAIPALIRLLCDGTPRGKKDAATAI 414 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i-~~~~~i~~Lv~lL~~~~~~~~~~a~~aL 414 (551)
.+..+...|++++|+.+|...+ ..+...++++|.+++........+ ...+++|.|+.+|.+++.+++..|+++|
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6888889999999999998653 457889999999999876544433 3458999999999999999999999999
Q ss_pred HHhccCCChHHH-HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHH
Q 008835 415 FNLSIYQGNKAR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 492 (551)
Q Consensus 415 ~nL~~~~~~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A 492 (551)
.+|+....++.. +++.|+++.|+.+|.+.+..++..|+.+|+|++.. +..+..+++.|+++.|+.+|.++++.+++.|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 999998776655 66889999999999999999999999999999875 5667788899999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 493 AAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 493 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+++|.||+.+++.....+.+.|+++.|+.++.+++.++++.|.++|.++..
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999865
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=2.9e-28 Score=262.92 Aligned_cols=281 Identities=20% Similarity=0.236 Sum_probs=254.7
Q ss_pred ccHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CC
Q 008835 263 CDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DS 340 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~ 340 (551)
.+.|.++.|+..|.. .+++.|..|+++|.+++.+++.++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +.
T Consensus 116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 455899999999974 5589999999999999999999999999999999999999999999999999999999986 56
Q ss_pred chHHHhhcCCcHHHHHHHhcCC-----HHHHHHHHHHHHHhcCCcchhHHh-hhhCcHHHHHHHhccCChhHHHHHHHHH
Q 008835 341 NKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVIDENKVAI-GAAGAIPALIRLLCDGTPRGKKDAATAI 414 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i-~~~~~i~~Lv~lL~~~~~~~~~~a~~aL 414 (551)
++..+...|++++|+.+|..++ ..+...++++|.+++........+ ...+++|.|+.+|.+++++++..|+++|
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 7888999999999999998653 457889999999999876544433 3458999999999999999999999999
Q ss_pred HHhccCCChHHH-HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHH
Q 008835 415 FNLSIYQGNKAR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 492 (551)
Q Consensus 415 ~nL~~~~~~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A 492 (551)
.+|+..++++.. ++..|+++.|+.+|.+++..++..|+.+|+|++.+ +..+..+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 999998776655 66889999999999999999999999999999885 5667888899999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 493 AAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 493 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+++|.||+.+++.....+.+.|+++.|+.++.+++.++++.|.++|.++..
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999864
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=257.24 Aligned_cols=281 Identities=20% Similarity=0.206 Sum_probs=245.8
Q ss_pred cccHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCH----------HHHHHhhcC
Q 008835 262 DCDRAAIDALLGKLANG------------NVEEQRAAAGELRLLAKRNADNRVCIAEAGAI----------PLLVELLSS 319 (551)
Q Consensus 262 ~~~~~~i~~Lv~~L~s~------------~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i----------~~Lv~lL~~ 319 (551)
....|.++.|+++|+.. +++.+.+|+++|.+++...++......+.|++ +.+++++.+
T Consensus 66 ~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 66 MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 35678999999999853 37999999999999999999888888888888 777888877
Q ss_pred CC--HH-----HHH-------HHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 008835 320 TD--PR-----TQE-------HAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN-----------GSMEARENAAATLF 374 (551)
Q Consensus 320 ~~--~~-----~~~-------~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~-----------~~~~~~~~aa~~L~ 374 (551)
.+ .+ +++ .|+++|.|++.++++|..|++.|++++|+.+|.. .++.++.+|+|+|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 52 22 444 9999999999999999999999999999999952 24678999999999
Q ss_pred HhcCCcc-hhHHhhh-hCcHHHHHHHhccCChhHHHHHHHHHHHhccC--CChHHHHHHcCChHHHHHhh-ccCChhhHH
Q 008835 375 SLSVIDE-NKVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNLSIY--QGNKARAVRAGIVPPLMRFL-KDAGGGMVD 449 (551)
Q Consensus 375 ~Ls~~~~-~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~~~~~~l~~~g~i~~Lv~lL-~~~~~~~~~ 449 (551)
||+..++ ++..+.. .|+||.|+.+|.+++++++..|+++|.||+.. +.++..+++.|+|++|+++| .+.+..+++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 9998875 6666654 57799999999999999999999999999985 45778899999999999986 456788999
Q ss_pred HHHHHHHHHhc-ChhhHHHhh-hCCCHHHHHHHHhcCCH----HHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHH
Q 008835 450 EALAILAILAS-HQEGKTAIG-QAEPIPVLMEVIRTGSP----RNRENAAAVLWAICT---GDAEQLKIARELDAEEALK 520 (551)
Q Consensus 450 ~al~~L~nL~~-~~~~~~~i~-~~~~v~~L~~lL~~~~~----~~k~~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~ 520 (551)
.|+.+|+||+. .++++..+. ..|+++.|+.+|.++++ .+++.|+++|.||+. .+++++..+.+.|+++.|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 99999999999 778888887 78999999999998764 489999999999997 7888999999999999999
Q ss_pred HHhhhCChHHHHHHHHHHHHHH
Q 008835 521 ELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 521 ~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.++.+++..+++.|.++|.+|.
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999997
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=4e-28 Score=267.54 Aligned_cols=283 Identities=17% Similarity=0.154 Sum_probs=254.4
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
.+.|+++.|+.+|+++++.+|.+|++.|.+++. ++++|..+++.|++|+|+.+|.++++..++.|+++|.||+.+....
T Consensus 492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~ 570 (810)
T 3now_A 492 ANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh
Confidence 355899999999999999999999999999996 6789999999999999999999999999999999999998754333
Q ss_pred HHH---hhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 343 GTI---VNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 343 ~~i---~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
..+ ...|++++|+++|.++ +...+..|+++|.||+..+ +++..+.+.|+++.|+.+|.++++.++..|+++|+||
T Consensus 571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650 (810)
T ss_dssp HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 221 1246999999999876 4555678999999999874 6788899999999999999999999999999999999
Q ss_pred ccCCChHHHHHH-cCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhh-CCCHHHHHHHHhcCCHHHHHHHHH
Q 008835 418 SIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAAA 494 (551)
Q Consensus 418 ~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~-~~~v~~L~~lL~~~~~~~k~~A~~ 494 (551)
+.+++.+..++. .|+++.|+.++.+.+..++..|+++|+||+. ++.....+++ .|+++.|+.+|.+++..++..|++
T Consensus 651 a~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp TTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred hCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 999988888885 7999999999999999999999999999999 6888888888 899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC---ChHHHHHHHHHHHHHHhHHH
Q 008835 495 VLWAICTGDAEQLKIARELDAEEALKELSESG---TDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 495 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~k~~A~~lL~~l~~~~~ 546 (551)
+|.|++.++++....+.+.|+++.|..++... +.++.+.|..+|+++-++..
T Consensus 731 aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 99999998888999999999999999998654 78999999999999976644
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=6.1e-28 Score=257.87 Aligned_cols=283 Identities=24% Similarity=0.256 Sum_probs=238.1
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCC
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKR-NADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~ 340 (551)
.+.++|+.|+.+|.+++.++|..|+++|++|+.. ++++|..|++.|+||.|+.+|++ .+..++++|+++|+|||.+++
T Consensus 87 ~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~ 166 (584)
T 3l6x_A 87 RKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166 (584)
T ss_dssp HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG
T ss_pred HHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence 4568999999999999999999999999999985 68999999999999999999997 588999999999999999999
Q ss_pred chHHHhhcCCcHHHHHHHh------------------cCCHHHHHHHHHHHHHhcCCcc-hhHHhhhh-CcHHHHHHHhc
Q 008835 341 NKGTIVNAGAIPDIVDVLK------------------NGSMEARENAAATLFSLSVIDE-NKVAIGAA-GAIPALIRLLC 400 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~------------------~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~-~~i~~Lv~lL~ 400 (551)
+|..|+. ++++.|+++|. ..+++++++|+++|.|||...+ ++..|.+. |+++.|+.+|+
T Consensus 167 ~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~ 245 (584)
T 3l6x_A 167 IKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245 (584)
T ss_dssp GHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999985 57999999872 1257899999999999998764 47777664 55666666654
Q ss_pred c--------------------------------------------------------------------------CChhH
Q 008835 401 D--------------------------------------------------------------------------GTPRG 406 (551)
Q Consensus 401 ~--------------------------------------------------------------------------~~~~~ 406 (551)
+ .++.+
T Consensus 246 ~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v 325 (584)
T 3l6x_A 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325 (584)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred HhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHH
Confidence 2 22344
Q ss_pred HHHHHHHHHHhccCCC-----hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHH
Q 008835 407 KKDAATAIFNLSIYQG-----NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI 481 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~-----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL 481 (551)
++.|+++|.||+.... ++..+.+.|+++.|+.+|.+++..++..|+++|.||+.++..+..| ..|+++.|+.+|
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL 404 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHh
Confidence 5566666666665432 1222334688999999999999999999999999999998888766 678999999999
Q ss_pred hcC--------CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC--ChHHHHHHHHHHHHHHhHHHh
Q 008835 482 RTG--------SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQRIDMA 547 (551)
Q Consensus 482 ~~~--------~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~lL~~l~~~~~~ 547 (551)
.++ +..+...|+++|.||+..++...+.+.+.|+++.|+.++.++ .+.+++.|.++|.+|..+.+.
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el 480 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL 480 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence 876 457888999999999999999999999999999999999987 899999999999999766554
No 12
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.9e-28 Score=248.85 Aligned_cols=245 Identities=19% Similarity=0.209 Sum_probs=219.4
Q ss_pred CcccHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHhhChhhHHHHHhc-CCHHHHHHhhcCCCHHHHHHH
Q 008835 261 SDCDRAAIDALLGKLAN-----------GNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSSTDPRTQEHA 328 (551)
Q Consensus 261 ~~~~~~~i~~Lv~~L~s-----------~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~~~~~~~~a 328 (551)
...+.|+++.|+.+|.+ .++..|..|++.|.+++..++.++..+... |+||.|+.+|.++++++++.|
T Consensus 68 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A 147 (354)
T 3nmw_A 68 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 147 (354)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHH
Confidence 44566899999999952 236789999999999998888889888654 569999999999999999999
Q ss_pred HHHHHhcccC--CCchHHHhhcCCcHHHHHHH-hcCCHHHHHHHHHHHHHhcC-CcchhHHhh-hhCcHHHHHHHhccCC
Q 008835 329 VTALLNLSIN--DSNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSV-IDENKVAIG-AAGAIPALIRLLCDGT 403 (551)
Q Consensus 329 ~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~-~~~~i~~Lv~lL~~~~ 403 (551)
+++|.||+.. +++|..+++.|+++.|+++| ++++.++++.|+.+|++|+. .++++..|. ..|++|.|+.+|.+++
T Consensus 148 ~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~ 227 (354)
T 3nmw_A 148 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 227 (354)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC
T ss_pred HHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC
Confidence 9999999984 56789999999999999985 56789999999999999998 567888888 6799999999998765
Q ss_pred h----hHHHHHHHHHHHhcc----CCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCH
Q 008835 404 P----RGKKDAATAIFNLSI----YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPI 474 (551)
Q Consensus 404 ~----~~~~~a~~aL~nL~~----~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v 474 (551)
. .+++.|+++|.||+. .++++..+++.|+++.|+.+|.+++..+++.|+++|+||+. +++.+..+.+.|++
T Consensus 228 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i 307 (354)
T 3nmw_A 228 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307 (354)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHH
T ss_pred CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 4 489999999999996 67788889999999999999999999999999999999995 78899999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 008835 475 PVLMEVIRTGSPRNRENAAAVLWAICTGDAE 505 (551)
Q Consensus 475 ~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~ 505 (551)
+.|+++|+++++.+++.|+++|.+|+.+++.
T Consensus 308 ~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 308 SMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999987754
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=8.4e-27 Score=251.45 Aligned_cols=281 Identities=20% Similarity=0.247 Sum_probs=257.6
Q ss_pred cHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCc
Q 008835 264 DRAAIDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSN 341 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~ 341 (551)
+.+.++.|+..|.+++ +.++..|++.|.+++..+++++..+.+.|++|.|+.+|.++++.+++.|+++|.||+.+ +.+
T Consensus 115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 4478999999999887 99999999999999998899999999999999999999999999999999999999986 456
Q ss_pred hHHHhhcCCcHHHHHHH-hcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 342 KGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
+..+...|+++.|+.+| .+.++.++..++++|.+|+............++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 88888999999999999 56789999999999999998765555555689999999999999999999999999999988
Q ss_pred CChHH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcC-CHHHHHHHHHHHH
Q 008835 421 QGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLW 497 (551)
Q Consensus 421 ~~~~~-~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~-~~~~k~~A~~~L~ 497 (551)
.+.+. .+++.|+++.|+.+|.++++.++..|+.+|+||+.. +.....+.+.|+++.|+.+|.++ ++.++..|+++|.
T Consensus 275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 77664 577899999999999999999999999999999984 56677888899999999999998 8999999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 498 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 498 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
+|+.+++.....+++.|+++.|+.++.++++.++..|.++|.++...
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99998888889999999999999999999999999999999999765
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=1.6e-26 Score=249.16 Aligned_cols=284 Identities=18% Similarity=0.170 Sum_probs=253.8
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHhccc
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD-----PRTQEHAVTALLNLSI 337 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~ 337 (551)
.+.|+++.|+.+|.+++++++..|+++|.+++.+++.+|..+.+.|++++|+.+|..++ ..++..++++|.|++.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999998754 4578899999999998
Q ss_pred CCCchH-HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch-hHHhhhhCcHHHHHHHhccCChhHHHHHHHHHH
Q 008835 338 NDSNKG-TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 415 (551)
Q Consensus 338 ~~~~~~-~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~ 415 (551)
+..... .....|+++.|+.+|.+++++++..|+|+|.+++..... ...+...|+++.|+.+|.+++..++..|+.+|.
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 754433 334578999999999999999999999999999987654 455667799999999999999999999999999
Q ss_pred HhccCCC-hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHH
Q 008835 416 NLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAA 493 (551)
Q Consensus 416 nL~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~ 493 (551)
||+...+ ....+++.|+++.|+.+|.++++.++..|+++|.||+.+ +..+..+.+.|+++.|+.+|.+++..++..|+
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~ 398 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA 398 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence 9988655 455688999999999999999999999999999999985 66678888999999999999999999999999
Q ss_pred HHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 494 AVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 494 ~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
++|.|++.+ +++.+..+++.|+++.|+.++.+.++++...+..+|.++.+..+
T Consensus 399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 999999874 57888899999999999999999999999999999999876543
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=2.7e-26 Score=246.25 Aligned_cols=283 Identities=18% Similarity=0.176 Sum_probs=252.4
Q ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHhccc
Q 008835 263 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD-----PRTQEHAVTALLNLSI 337 (551)
Q Consensus 263 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~ 337 (551)
.+.|+++.|+.+|.+++++++..|+++|.+++.+++.+|..+.+.|++++|+.+|...+ ..+++.++++|.|++.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 45589999999999999999999999999999989999999999999999999998764 4578899999999998
Q ss_pred CCCchHH-HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch-hHHhhhhCcHHHHHHHhccCChhHHHHHHHHHH
Q 008835 338 NDSNKGT-IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 415 (551)
Q Consensus 338 ~~~~~~~-i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~ 415 (551)
+...... ....|+++.|+.+|.+++++++..|+++|.+|+..... ...+...|+++.|+.+|.+++..++..++++|.
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 7554433 33578899999999999999999999999999987654 455667799999999999999999999999999
Q ss_pred HhccCCCh-HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHH
Q 008835 416 NLSIYQGN-KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAA 493 (551)
Q Consensus 416 nL~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~ 493 (551)
||+...+. +..+++.|+++.|+.+|.+++..++..|+++|.||+.+ +..+..+.+.|+++.|+.+|.+++..++..|+
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 99886654 55688999999999999999999999999999999984 66778888999999999999999999999999
Q ss_pred HHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 494 AVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 494 ~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
++|.|++.+ +++.+..+++.|+++.|+.++.+.++++...+.++|.++-+..
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999999874 5778889999999999999999999999999999999886644
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=3.7e-26 Score=221.22 Aligned_cols=238 Identities=29% Similarity=0.367 Sum_probs=222.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~ 344 (551)
+.++.|+..|.+++++.+..|++.|.+++..++.++..+.+.|++|.|+++|.++++.++..|+++|.+++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4689999999999999999999999999998888999999999999999999999999999999999999987 777888
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLS-VIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 423 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls-~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 423 (551)
+.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+...|+++.|+++|.++++.++..|+++|.||+...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5567888899999999999999999999999999999999986655
Q ss_pred H-HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 424 K-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 424 ~-~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
. ..+++.|+++.|+.++.++++.++..|+.+|.+++. ++..+..+.+.|+++.|+++++++++.+++.|+++|.+|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 4 678899999999999999999999999999999998 56778888899999999999999999999999999999997
Q ss_pred CC
Q 008835 502 GD 503 (551)
Q Consensus 502 ~~ 503 (551)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=1e-25 Score=243.05 Aligned_cols=281 Identities=18% Similarity=0.169 Sum_probs=256.3
Q ss_pred cHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCc
Q 008835 264 DRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSN 341 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~ 341 (551)
+.+.++.|+..|.++ ++.++..|++.|.+++..+++++..+.+.|++|.|+.+|.++++.+++.|+++|.+|+.+ +.+
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 347899999999987 899999999999999998888999999999999999999999999999999999999986 467
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
+..+...|+++.|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888888999999999999999999999999999999775 4445555679999999999999999999999999999986
Q ss_pred CC-hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 421 QG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 421 ~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
.+ ....+++.|+++.|+.+|.+.+..++..|+.+|.+++.. +.....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54 455678899999999999999999999999999999985 5666777888999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 499 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 499 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
++.+++.....+++.|+++.|+.++.++++.++..|.++|.++...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9998888888889999999999999999999999999999999764
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=5.6e-26 Score=219.92 Aligned_cols=238 Identities=28% Similarity=0.338 Sum_probs=222.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCC-chHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhHH
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDS-NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVA 385 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~ 385 (551)
|+||.|+.+|.+++++++..|+++|.+++.... ++..+++.|+++.|+.+|++++.+++..|+++|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 679999999999999999999999999988654 788889999999999999999999999999999999988 678899
Q ss_pred hhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc-CCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hh
Q 008835 386 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QE 463 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~ 463 (551)
+...|+++.|+.+|+++++.++..|+++|.||+. .++++..+++.|+++.|++++.++++.++..|+.+|.||+.. +.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999994 566777899999999999999999999999999999999985 55
Q ss_pred hHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 464 GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 464 ~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
.+..+.+.|+++.|+.+|.++++.++..|+++|.+++..++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 56788899999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred HH
Q 008835 544 ID 545 (551)
Q Consensus 544 ~~ 545 (551)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=3e-25 Score=239.33 Aligned_cols=283 Identities=19% Similarity=0.166 Sum_probs=255.6
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHhcccCCCch
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
+.+.++.|+..|.+++++++..|++.|.+++..++.++..+.+.|++|.|+.+| .+.++.++..|+++|.+|+......
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~ 237 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP 237 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 347899999999999999999999999999998889999999999999999999 6679999999999999999876555
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh-HHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
......|+++.|+.+|.+++++++..|+++|.+|+...+.. ..+...|+++.|+.+|.++++.++..|+++|.||+...
T Consensus 238 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 238 SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC
Confidence 55566899999999999999999999999999999876554 46667799999999999999999999999999999865
Q ss_pred C-hHHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 422 G-NKARAVRAGIVPPLMRFLKDA-GGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 422 ~-~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
+ ....+++.|+++.|+.+|.++ ++.++..|+++|.||+.. ++....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus 318 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~n 397 (528)
T 4b8j_A 318 DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN 397 (528)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4 445678899999999999988 899999999999999974 5567788889999999999999999999999999999
Q ss_pred HhcC-CHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 499 ICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 499 L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
++.. ++.....+++.|+++.|+.++.++++.++..|..+|.+|.+..+
T Consensus 398 l~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 398 ATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp HHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9987 68888999999999999999999999999999999999976543
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=2.5e-26 Score=223.08 Aligned_cols=236 Identities=24% Similarity=0.350 Sum_probs=217.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhccc-CCCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~ 344 (551)
...+.++..|++++++++..|++.|+++...+..++..+.+.|++|.|+.+|.++++.++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 468999999999999999999999977665577888899999999999999999999999999999999998 5778888
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh-HHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC-
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG- 422 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~- 422 (551)
+++.|+++.|+.+|++++++++..|+++|.+|+..+..+ ..+...|+++.|+.+|.+++..++..|+++|.||+...+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998887 888888999999999999999999999999999998654
Q ss_pred hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 423 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 423 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
++..+++.|+++.|+.+|.++++.++..|+.+|.||+. +++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 45567889999999999999999999999999999996 56778888999999999999999999999999999999985
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=1e-24 Score=229.75 Aligned_cols=278 Identities=19% Similarity=0.201 Sum_probs=250.4
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCC-CchH
Q 008835 266 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKG 343 (551)
Q Consensus 266 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~ 343 (551)
+.++.|+..|.++ ++.++..|++.|.+++..++++...+.+.|++|.|+.+|.++++.+++.|+++|.+++.+. ..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 7899999999988 8999999999999999888888888889999999999999999999999999999999864 5677
Q ss_pred HHhhcCCcHHHHHHHhc-CCHHHHHHHHHHHHHhcCCc-c-hhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 344 TIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVID-E-NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~-~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
.+...|+++.|+.+|.+ .+.+++..|+++|.+|+... . .+..+. .+++|.|+.++.+++..++..++++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88889999999999996 68999999999999999764 2 222232 78999999999999999999999999999986
Q ss_pred C-ChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh-hhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 421 Q-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 421 ~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~-~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
. +....++..|+++.|+.+|.+.++.++..|+.+|.+++... .....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5 45556778999999999999999999999999999999864 445667888999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 499 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 499 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
++.+++.....+.+.|+++.|+.++.+++++++..|.++|.++...
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9998888888899999999999999999999999999999999753
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=9.6e-25 Score=229.90 Aligned_cols=281 Identities=20% Similarity=0.182 Sum_probs=252.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCC--Cc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND--SN 341 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~--~~ 341 (551)
.+.++.|+..|++++++++..|++.|.+++..++.++..+.+.|++|.|+.+|.+ .+..++..|+++|.+++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 3689999999999999999999999999999888899999999999999999996 68999999999999999753 33
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
+..++ .++++.|+.+|.+++++++..++++|.+|+... +....+...|+++.|+.+|.+++..++..|+++|.+|+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 33333 789999999999999999999999999999865 4566777789999999999999999999999999999987
Q ss_pred CChHH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 421 QGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 421 ~~~~~-~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
.+... .+++.|+++.|+.+|.++++.++..|+++|.+++. .++....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66544 47788999999999999999999999999999997 56677788888999999999999999999999999999
Q ss_pred HhcC-CHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 499 ICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 499 L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
++.. ++.....+.+.|+++.|+.++.+++++++..|.++|.++....+
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 9976 67788888899999999999999999999999999999876543
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=1.1e-24 Score=234.93 Aligned_cols=278 Identities=20% Similarity=0.233 Sum_probs=252.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHhcccC-CCch
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKR-NADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSIN-DSNK 342 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~-~~~~ 342 (551)
+.++.|+..|.+++++.+..|+..|+.+... ....+..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.+ ++.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4689999999999999999999999999653 245667788999999999999997 899999999999999986 4567
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
..++..|+++.|+.+|.+++++++..|+++|.+|+... .++..+...|+++.|+.+|.+.+..++..|+++|.||+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 77888999999999999999999999999999999874 67888888899999999999989999999999999999876
Q ss_pred -ChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008835 422 -GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 499 (551)
Q Consensus 422 -~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L 499 (551)
+........|+++.|+.+|.+.++.++..|+++|.+|+.. ++....+.+.|+++.|+.+|.++++.++..|+.+|.++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 5555667789999999999999999999999999999986 56677888889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 500 CTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 500 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+.+++.....+.+.|+++.|+.++.++++.++..|.++|.++..
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99988888889999999999999999999999999999999974
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1.6e-25 Score=217.30 Aligned_cols=236 Identities=25% Similarity=0.348 Sum_probs=219.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcc-cCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchhHH
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLS-INDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVA 385 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~~~~~~ 385 (551)
...+.++++|.+++++++..|+++|.++. .+++++..+++.|+++.|+.+|++++++++..|+++|.+++. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 46899999999999999999999997754 456778888899999999999999999999999999999998 4678889
Q ss_pred hhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChH-HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hh
Q 008835 386 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QE 463 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~ 463 (551)
+...|+++.|+.+|+++++.++..|+++|.||+...+++ ..+++.|+++.|+.+|.+++..++..|+++|.+|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999988 7789999999999999999999999999999999985 56
Q ss_pred hHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 464 GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 464 ~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
.+..+.+.|+++.|+.+|.++++.+++.|+++|.+|+..++.....+.+.|+++.|+.++.++++++++.|.++|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999998754
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=1.1e-23 Score=226.56 Aligned_cols=276 Identities=22% Similarity=0.253 Sum_probs=247.9
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCch
Q 008835 265 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNK 342 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~ 342 (551)
.+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|++|.|+.+|.++++.++..|+++|.+++.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 47899999999754 89999999999999997 566999999999999999999999999999999999999986 5667
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhHHhhhhCcHHHHHHHhccCCh-hHHHHHHHHHHHhccC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIFNLSIY 420 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~ 420 (551)
..+.+.|+++.|+++|++++++++..++.+|.+++.. ++++..+...|+++.|+.+|++++. ..+..++.+|.||+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 7788999999999999999999999999999999975 5788889989999999999998754 5566788999999999
Q ss_pred CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
++++..+++.|+++.|++++.+.++.++..++++|.+|+....... ...++++.|+.+|.++++.+++.|+++|.+|+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998654322 22378999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhhC--ChHHHHHHHHHHHHHHh
Q 008835 501 TGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQR 543 (551)
Q Consensus 501 ~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~lL~~l~~ 543 (551)
.++++.+..+.+.|+++.|+.++.+. ++.++..|..+|.+|..
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 99888999999999999999999763 37999999999999864
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=2.5e-23 Score=229.72 Aligned_cols=276 Identities=22% Similarity=0.255 Sum_probs=248.4
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCch
Q 008835 265 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNK 342 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~ 342 (551)
.+.++.|+..|.++ +++.+..|+..|.+++. .++++..+.+.|++|.|+.+|+++++.++..|+++|.||+.+ +..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47899999999875 89999999999999997 466999999999999999999999999999999999999986 4567
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchhHHhhhhCcHHHHHHHhccCC-hhHHHHHHHHHHHhccC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGT-PRGKKDAATAIFNLSIY 420 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~ 420 (551)
..+.+.|+++.|+++|++++++++..++.+|.+|+. .++++..+...|+++.|+.+|++++ ...+..++.+|.||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 778889999999999999999999889999999996 5678999999999999999998865 56778899999999999
Q ss_pred CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
++++..+++.|+++.|+.++.+.+..++..++++|.||+...... ....++++.|+.+|.++++.+++.|+++|.+|+
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999989999999999999999864322 122378999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhhC-C-hHHHHHHHHHHHHHHh
Q 008835 501 TGDAEQLKIARELDAEEALKELSESG-T-DRAKRKAGSILELLQR 543 (551)
Q Consensus 501 ~~~~~~~~~~~~~g~i~~L~~ll~~~-~-~~~k~~A~~lL~~l~~ 543 (551)
.+++..+..+.+.|+++.|+.++.+. + +.++..|..+|.+|..
T Consensus 292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 99988999999999999999999874 3 7999999999999963
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=6.2e-24 Score=228.56 Aligned_cols=277 Identities=21% Similarity=0.168 Sum_probs=245.2
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh-cCCHHHHHHhhcCC-CHHHHHHHHHHHHhcccCCCc
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSN 341 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~ 341 (551)
+.+.++.|+.+|+++++.++..|+..|.+++. +..++..+.. .|+++.|+++|.++ ++.++..|+.+|.+|+.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 35789999999999999999999999999997 4556766665 48999999999764 899999999999999998889
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 420 (551)
+..+.+.|+++.|+++|++++++++..|+++|.+|+..+ ..+..+...|++|.|+.+|.+++.+++..++.+|.+++..
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999874 5677777889999999999999999999999999999985
Q ss_pred -CChHHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 421 -QGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 421 -~~~~~~l~~~g~i~~Lv~lL~~~~-~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
++++..+.+.|+++.|+.+|.+.+ ......++.+|.+|+.+++.+..+.+.|+++.|+.++.++++.++..|+++|.+
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 567778899999999999998754 456677899999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 499 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 499 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
|+...+.. ....|+++.|+.++.++++.++..|.++|.+|...
T Consensus 254 l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 254 LSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 99866321 11247899999999999999999999999999653
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=199.76 Aligned_cols=195 Identities=18% Similarity=0.254 Sum_probs=176.0
Q ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhccc-CCCch
Q 008835 266 AAIDALLGKLANGNV--EEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNK 342 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~--~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~ 342 (551)
..++.|+++|.++++ +.|..|++.|.+++..++.+|..+.+.|+||+|+.+|.++++++|+.|+++|.||+. ++++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 579999999999988 889999999999999999999999999999999999999999999999999999998 47899
Q ss_pred HHHhhcCCcHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhc---c-------------CChh
Q 008835 343 GTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---D-------------GTPR 405 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~---~-------------~~~~ 405 (551)
..|++.|+|++|+++|+ +++.+++++|+.+|++||..+.++..|.+. ++|+|++++. + .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 478999999999999999999999999874 7999998763 1 2568
Q ss_pred HHHHHHHHHHHhccCC-ChHHHHHHc-CChHHHHHhhcc------CChhhHHHHHHHHHHHhcC
Q 008835 406 GKKDAATAIFNLSIYQ-GNKARAVRA-GIVPPLMRFLKD------AGGGMVDEALAILAILASH 461 (551)
Q Consensus 406 ~~~~a~~aL~nL~~~~-~~~~~l~~~-g~i~~Lv~lL~~------~~~~~~~~al~~L~nL~~~ 461 (551)
++..|..+|.||+..+ ++|..|.+. |+|+.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999854 888889886 678999999976 3567899999999999875
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=230.51 Aligned_cols=277 Identities=21% Similarity=0.171 Sum_probs=246.9
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh-cCCHHHHHHhhcCC-CHHHHHHHHHHHHhcccCCCc
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSN 341 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~ 341 (551)
+.+.++.|+.+|++.++.++..|+..|.+++.+. .++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.++++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3478999999999999999999999999999755 46666665 48999999999875 899999999999999998889
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc-
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI- 419 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~- 419 (551)
+..+.+.|+++.|+++|+++++.++..|+++|.+|+... ..+..+...|+++.|+.+|++++.+.+..++.+|.+|+.
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999774 566777788999999999999998888889999999997
Q ss_pred CCChHHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 420 YQGNKARAVRAGIVPPLMRFLKDA-GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 420 ~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
+++++..+++.|+++.|+.+|.+. ...++..++.+|.||+.+++.+..+.+.|+++.|+.++.++++.+++.|+++|.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 667888899999999999999874 3567788999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 499 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 499 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
||...+.. ....|+++.|+.++.++++.++..|.++|.+|...
T Consensus 251 L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 251 LSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred Hhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99865321 11237899999999999999999999999999764
No 30
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.2e-23 Score=223.42 Aligned_cols=281 Identities=15% Similarity=0.118 Sum_probs=239.2
Q ss_pred cHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCh-------------------------------------h-hHHHH
Q 008835 264 DRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNA-------------------------------------D-NRVCI 304 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~-------------------------------------~-~r~~i 304 (551)
+.+.++.|+..+++ .+......++..|.|++...+ + ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 56789999999985 667788899999988875322 1 46677
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHH---HHHHHHHHHHHhcCCcc
Q 008835 305 AEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSME---ARENAAATLFSLSVIDE 381 (551)
Q Consensus 305 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~---~~~~aa~~L~~Ls~~~~ 381 (551)
.+.|+||.|+.++.++++.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++.. .+..|+.+|.+|+...+
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999998654 89999999999987665
Q ss_pred hhHHhhh---hCcHHHHHHHhcc--CCh------------hHHHHHHHHHHHhccCCCh-----HHHHHHc-CChHHHHH
Q 008835 382 NKVAIGA---AGAIPALIRLLCD--GTP------------RGKKDAATAIFNLSIYQGN-----KARAVRA-GIVPPLMR 438 (551)
Q Consensus 382 ~~~~i~~---~~~i~~Lv~lL~~--~~~------------~~~~~a~~aL~nL~~~~~~-----~~~l~~~-g~i~~Lv~ 438 (551)
....+.. .|+|++|+.+|.. +.. ..+..|+.||.||+..+++ +..++.. |+++.|.+
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 5555432 3999999999983 211 1277999999999998743 6778885 99999999
Q ss_pred hhccCChhhHHHHHHHHHHHhcChhhH-HHhhhCC------CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008835 439 FLKDAGGGMVDEALAILAILASHQEGK-TAIGQAE------PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR 511 (551)
Q Consensus 439 lL~~~~~~~~~~al~~L~nL~~~~~~~-~~i~~~~------~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~ 511 (551)
+|.+.+..++..|+.+++||+.+++++ +.+...+ .++.|+.++++++.++|..|+++|.+++...+..+..++
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999989999999999999999999875 3554322 378999999999999999999999999988888888888
Q ss_pred Hc-CcHHHHHHHhhh--CChHHHHHHHHHHHHHHhH
Q 008835 512 EL-DAEEALKELSES--GTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 512 ~~-g~i~~L~~ll~~--~~~~~k~~A~~lL~~l~~~ 544 (551)
+. ++++.|+.++++ +++.++..+..++.+|.++
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 87 899999999999 8999999999999999864
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=2.7e-22 Score=188.93 Aligned_cols=197 Identities=25% Similarity=0.346 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhccc-CCCchH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKG 343 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~ 343 (551)
.+..+.|+.+|.+++++++..|++.|.+++..++.++..+.+.|++|.|+++|.++++.++..|+++|.||+. ++.++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3678899999999999999999999999998899999999999999999999999999999999999999996 467788
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC-C
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY-Q 421 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~ 421 (551)
.+++.|+++.|+.+|+++++.++..|+++|.+|+... +.+..+...|+++.|+.+|.+++..++..|+++|.||+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 8889999999999999999999999999999999755 4566778889999999999999999999999999999987 5
Q ss_pred ChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 422 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 422 ~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
+++..+++.|+++.|+.++.+.++.+++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 5667788999999999999999999999999999999863
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=5.2e-22 Score=223.15 Aligned_cols=276 Identities=23% Similarity=0.265 Sum_probs=246.1
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCch
Q 008835 265 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNK 342 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~ 342 (551)
.+.++.|+..|.++ +++.+..|+..|.+++. ...++..+.+.|+||.|+.+|+++++.++..|+++|.||+.+ +..+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 47899999999855 89999999999999997 567799999999999999999999999999999999999986 5567
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhHHhhhhCcHHHHHHHhccCCh-hHHHHHHHHHHHhccC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIFNLSIY 420 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~ 420 (551)
..+.+.|+++.|+++|.+++.+++..++.+|.+|+.. ++++..+...|+++.|+.+|++++. ..+..++.+|.+|+..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 7777899999999999999999999999999999864 5788888889999999999998765 4566789999999999
Q ss_pred CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
..++..+++.|+++.|+.++.+.+..++..|+++|.+|+...... ....++++.|+.+|.+.++.+++.|+++|.+|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999999999999865331 122468999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhh-CC-hHHHHHHHHHHHHHHh
Q 008835 501 TGDAEQLKIARELDAEEALKELSES-GT-DRAKRKAGSILELLQR 543 (551)
Q Consensus 501 ~~~~~~~~~~~~~g~i~~L~~ll~~-~~-~~~k~~A~~lL~~l~~ 543 (551)
.+++..+..+.+.|+++.|+.++.+ ++ +.++..|.++|.+|..
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 9998899999999999999999976 44 4899999999999864
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=5e-23 Score=195.25 Aligned_cols=193 Identities=16% Similarity=0.215 Sum_probs=173.1
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHHHhccc-CCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhH
Q 008835 309 AIPLLVELLSSTDP--RTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKV 384 (551)
Q Consensus 309 ~i~~Lv~lL~~~~~--~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~ 384 (551)
.+|.|+++|+++++ .++..|+++|.+|+. ++++|..|.+.|+||+|+++|++++++++..|+++|.||+.. ++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999988 899999999999996 577899999999999999999999999999999999999984 68999
Q ss_pred HhhhhCcHHHHHHHhc-cCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc----------------CChhh
Q 008835 385 AIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD----------------AGGGM 447 (551)
Q Consensus 385 ~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~----------------~~~~~ 447 (551)
.|.+.|+||+|+++|. +++..+++.|+.+|+||+..+.++..+++. ++++|++++.. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999998875 69999987631 25588
Q ss_pred HHHHHHHHHHHhc-ChhhHHHhhhC-CCHHHHHHHHhcC------CHHHHHHHHHHHHHHhcC
Q 008835 448 VDEALAILAILAS-HQEGKTAIGQA-EPIPVLMEVIRTG------SPRNRENAAAVLWAICTG 502 (551)
Q Consensus 448 ~~~al~~L~nL~~-~~~~~~~i~~~-~~v~~L~~lL~~~------~~~~k~~A~~~L~~L~~~ 502 (551)
++.|.++|.||+. ++++|..|.+. |+|+.|+.+++.+ +...+|+|+.+|.||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999998 57999999986 6789999999863 467899999999999864
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=4.1e-22 Score=224.03 Aligned_cols=276 Identities=23% Similarity=0.277 Sum_probs=243.0
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCC-Cch
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNK 342 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~ 342 (551)
+.+.++.|+..|.+++...+..|++.|.+++...... ....+++|.|+.+|.+.++.++..|+++|.+|+..+ .++
T Consensus 358 ~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~ 434 (780)
T 2z6g_A 358 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434 (780)
T ss_dssp HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4478899999999999999999999999999755321 123478999999999999999999999999999864 667
Q ss_pred HHHhhcCCcHHHHHHHhc-CC-HHHHHHHHHHHHHhcCCcc----hhHHhhhhCcHHHHHHHhccCCh-hHHHHHHHHHH
Q 008835 343 GTIVNAGAIPDIVDVLKN-GS-MEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIF 415 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~-~~-~~~~~~aa~~L~~Ls~~~~----~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~aL~ 415 (551)
..+.+.|+++.|+++|.+ ++ .+++..|+++|.+|+.... .+..+...++++.|+.+|.+++. .+++.|+++|.
T Consensus 435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~ 514 (780)
T 2z6g_A 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514 (780)
T ss_dssp HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 888899999999999986 33 5899999999999987542 35577778999999999998775 89999999999
Q ss_pred HhccCCChHHHHHHcCChHHHHHhhccCC----------------------hhhHHHHHHHHHHHhcChhhHHHhhhCCC
Q 008835 416 NLSIYQGNKARAVRAGIVPPLMRFLKDAG----------------------GGMVDEALAILAILASHQEGKTAIGQAEP 473 (551)
Q Consensus 416 nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~----------------------~~~~~~al~~L~nL~~~~~~~~~i~~~~~ 473 (551)
||+..+.++..+.+.|+++.|+.+|.+.+ ..++..++.+|.+|+.++.++..+.+.|+
T Consensus 515 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~ 594 (780)
T 2z6g_A 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNT 594 (780)
T ss_dssp HHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred HHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCc
Confidence 99998888888999999999999997532 34677899999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 474 IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 474 v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
++.|+.+|.++++.++..|+.+|.+|+. ++..+..+.+.|+++.|..++.++++.+++.|.++|..+..
T Consensus 595 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 595 IPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999985 46788889999999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=1.1e-21 Score=184.69 Aligned_cols=197 Identities=25% Similarity=0.345 Sum_probs=180.5
Q ss_pred hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc-CCChH
Q 008835 347 NAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNK 424 (551)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~ 424 (551)
..|+.+.|+.+|++++++++..|+++|.+++. .++++..+.+.|+++.|+.+|.++++.++..|+++|.||+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 46789999999999999999999999999995 45678888899999999999999999999999999999996 45677
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 425 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
..+++.|+++.|+.+|.++++.++..|+++|.||+. .++.+..+.+.|+++.|+.+|+++++.+++.|+++|.+++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999999999999997 4666778889999999999999999999999999999999998
Q ss_pred HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 504 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 504 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+.....+.+.|+++.|+.++.++++.+++.|.++|..|.+
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999998854
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.6e-20 Score=203.30 Aligned_cols=280 Identities=13% Similarity=0.112 Sum_probs=230.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhc-CCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCC---
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSS-TDPRTQEHAVTALLNLSINDS--- 340 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~--- 340 (551)
...+.+.+.|.+++.+.+..|++.|.+++. .++.|..+++. |+++.|+.+++. .+..+...++.+|.||+.+.+
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 577889999988887789999999999997 67778887765 679999999995 788899999999999986321
Q ss_pred ------------------------------------chHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhH
Q 008835 341 ------------------------------------NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV 384 (551)
Q Consensus 341 ------------------------------------~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~ 384 (551)
++..+.+.|+++.|+.+++++++.+++.|+++|.+||.+.+++.
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~ 492 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP 492 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 23455689999999999999999999999999999999999999
Q ss_pred HhhhhCcHHHHHHHhccCChh---HHHHHHHHHHHhccCCChHHHHHH---cCChHHHHHhhcc-CChh-----------
Q 008835 385 AIGAAGAIPALIRLLCDGTPR---GKKDAATAIFNLSIYQGNKARAVR---AGIVPPLMRFLKD-AGGG----------- 446 (551)
Q Consensus 385 ~i~~~~~i~~Lv~lL~~~~~~---~~~~a~~aL~nL~~~~~~~~~l~~---~g~i~~Lv~lL~~-~~~~----------- 446 (551)
.+.+.|++++|+.+|.+++.. ++..|+.+|++|+...+....+-. .|+|++|+++|.. +...
T Consensus 493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~ 572 (778)
T 3opb_A 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK 572 (778)
T ss_dssp HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence 999999999999999988654 899999999999976554432211 3899999999973 2111
Q ss_pred -h-HHHHHHHHHHHhcCh-----hhHHHhhhC-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH------
Q 008835 447 -M-VDEALAILAILASHQ-----EGKTAIGQA-EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE------ 512 (551)
Q Consensus 447 -~-~~~al~~L~nL~~~~-----~~~~~i~~~-~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~------ 512 (551)
+ +..|+.+|.||+..+ +.|..++.. |+++.|..+|.+++..+|..|+++++||+.+.....+.+.+
T Consensus 573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchh
Confidence 1 678999999999986 347878886 99999999999999999999999999999754321123322
Q ss_pred cCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 513 LDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 513 ~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
.+.++.|+.|+.+++.+.|+.|.++|.++...++
T Consensus 653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 653 LRNFNILVKLLQLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred hccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence 1248899999999999999999999999965433
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=3.4e-19 Score=176.15 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHH
Q 008835 264 DRAAIDALLGKLANG------------NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LLSSTDPRTQEHAVT 330 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~------------~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~ 330 (551)
+...++..+..|.++ +.+.+..|+..|..++. +.++...+...|++|+|+. +|.++++.++..|++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~ 104 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ 104 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHH
Confidence 345667777777764 23578889999999996 6678888999999999999 999999999999999
Q ss_pred HHHhcccC-CCchHHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHhccCChhHH
Q 008835 331 ALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGK 407 (551)
Q Consensus 331 ~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~ 407 (551)
+|+|++.+ +..+..+++.|++++|+.+|+++ +..++..|+|+|.+|+... .....+...|+++.|+.+|++++..++
T Consensus 105 ~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~ 184 (296)
T 1xqr_A 105 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK 184 (296)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 99999986 45688888999999999999965 7899999999999998765 456677788999999999999999999
Q ss_pred HHHHHHHHHhccC-CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh-hhHHHhhhC-CCHHHH----HHH
Q 008835 408 KDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKTAIGQA-EPIPVL----MEV 480 (551)
Q Consensus 408 ~~a~~aL~nL~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~-~~~~~i~~~-~~v~~L----~~l 480 (551)
..|+++|.||+.. ++.+..+++.|++++|+.+|.+++..+++.|+.+|.||+... ......... ..+..+ .+-
T Consensus 185 ~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~ 264 (296)
T 1xqr_A 185 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 264 (296)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999875 456778999999999999999999999999999999999873 333322221 112222 233
Q ss_pred HhcC--CHHHHHHHHHHHHHHh
Q 008835 481 IRTG--SPRNRENAAAVLWAIC 500 (551)
Q Consensus 481 L~~~--~~~~k~~A~~~L~~L~ 500 (551)
++.. ..++.+.|..+|-+..
T Consensus 265 lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 265 LQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHHc
Confidence 3322 3566677776666554
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.83 E-value=4.6e-19 Score=175.17 Aligned_cols=221 Identities=21% Similarity=0.161 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHH-HHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhhCcHHHHHHHh
Q 008835 322 PRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVD-VLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLL 399 (551)
Q Consensus 322 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL 399 (551)
.+-+..|+..|.+++.+.++...+...|+++.|+. +|.+++++++..|+|+|.+++.++ ..+..+...|++|+|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45678899999999988788888899999999999 999999999999999999999765 5788888899999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhccCCCh-HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHH
Q 008835 400 CDG-TPRGKKDAATAIFNLSIYQGN-KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPV 476 (551)
Q Consensus 400 ~~~-~~~~~~~a~~aL~nL~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~ 476 (551)
+++ +..+++.|+++|.||+.+... ...+++.|+++.|+.+|.+++..++..|+++|.+|+. +++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 788999999999999986554 5568889999999999999999999999999999988 4778899999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CcHHHH---HHHhhhC--ChHHHHHHHHHHHHHH
Q 008835 477 LMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL--DAEEAL---KELSESG--TDRAKRKAGSILELLQ 542 (551)
Q Consensus 477 L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~--g~i~~L---~~ll~~~--~~~~k~~A~~lL~~l~ 542 (551)
|+.+|.++++.+++.|+.+|.+|+...+......... .+...| .+-+++. ..+..++|..++..+-
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999876555544332 222222 2333422 4677888888888764
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.80 E-value=2.7e-20 Score=147.80 Aligned_cols=76 Identities=33% Similarity=0.458 Sum_probs=70.3
Q ss_pred CCCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcCC
Q 008835 166 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 242 (551)
Q Consensus 166 ~~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 242 (551)
....+|++|.||||+++|.|||+++|||+||+.||++|+.. +.+||.|+.++....++||..++++|+.|+..++.
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 34568999999999999999999999999999999999995 68899999999999999999999999999988754
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.80 E-value=4.2e-20 Score=151.05 Aligned_cols=77 Identities=34% Similarity=0.451 Sum_probs=71.3
Q ss_pred CCCCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcCC
Q 008835 165 HRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 242 (551)
Q Consensus 165 ~~~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 242 (551)
.....+|++|.||||+++|.|||+++|||+||+.||.+|+. ++.+||.|+.++....++||..+++.|..|+..++.
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 34457899999999999999999999999999999999998 478999999999999999999999999999998764
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.79 E-value=5.1e-20 Score=165.22 Aligned_cols=76 Identities=34% Similarity=0.516 Sum_probs=71.2
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcCCC
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 243 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 243 (551)
..+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++....++||..++++|..|+..||+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 4679999999999999999999999999999999999975558999999999999999999999999999998874
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.79 E-value=9.8e-20 Score=148.29 Aligned_cols=78 Identities=29% Similarity=0.395 Sum_probs=71.8
Q ss_pred CCCCCCCCCcccccccccCcCCeeccCc-ccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcCCC
Q 008835 165 HRSPVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 243 (551)
Q Consensus 165 ~~~~~~~~~~~Cpic~~~~~~Pv~~~cg-h~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 243 (551)
.....+|++|.||||+++|+|||+++|| |+|||.||++|+.. +.+||.|++++....++||..+++.|+.|+..++.+
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 3345789999999999999999999999 99999999999985 678999999999999999999999999999988764
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.76 E-value=5.2e-19 Score=138.71 Aligned_cols=75 Identities=85% Similarity=1.438 Sum_probs=70.9
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcCC
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 242 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 242 (551)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.||..++++|+.|..+++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999987788999999999988999999999999999998875
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.72 E-value=9.6e-18 Score=165.47 Aligned_cols=78 Identities=33% Similarity=0.509 Sum_probs=72.5
Q ss_pred CCCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcCCC
Q 008835 166 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 243 (551)
Q Consensus 166 ~~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 243 (551)
....+|++|.||||+++|.|||+++||||||+.||.+|+..+..+||.|+.+++...++||..++.+|..|+..+++.
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 345788999999999999999999999999999999999987777999999999999999999999999999998764
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=132.70 Aligned_cols=74 Identities=27% Similarity=0.464 Sum_probs=65.6
Q ss_pred CCCCCcccccccccCcCCeecc-CcccccHHHHHHHHHhC-----CCCCCC--Cccc-ccCCCCccchhhHHHHHHHHHh
Q 008835 169 VIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAG-----HKTCPK--TQQT-LLHTALTPNYVLKSLIALWCEN 239 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~-cgh~~~~~ci~~~~~~~-----~~~CP~--c~~~-l~~~~~~~n~~l~~~i~~~~~~ 239 (551)
..+++|.||||+++|.|||+++ |||+||+.||.+|+..+ ..+||. |+.. +...+++||..|+.+|..|...
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999996 99999999999999863 468999 6655 8888999999999999999987
Q ss_pred cCC
Q 008835 240 NGV 242 (551)
Q Consensus 240 ~~~ 242 (551)
++.
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 664
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=123.88 Aligned_cols=76 Identities=29% Similarity=0.531 Sum_probs=67.8
Q ss_pred CCCCCCCcccccccccCcCCeecc-CcccccHHHHHHHHHh-CCCCCCCCcccc-cCCCCccchhhHHHHHHHHHhcCC
Q 008835 167 SPVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDA-GHKTCPKTQQTL-LHTALTPNYVLKSLIALWCENNGV 242 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv~~~-cgh~~~~~ci~~~~~~-~~~~CP~c~~~l-~~~~~~~n~~l~~~i~~~~~~~~~ 242 (551)
...+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|+.++ ....+.+|..++++++.|...++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 456789999999999999999999 9999999999999975 457999999997 566899999999999999887654
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.57 E-value=1.5e-13 Score=145.29 Aligned_cols=276 Identities=16% Similarity=0.184 Sum_probs=220.9
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHhcccC-CC
Q 008835 265 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSIN-DS 340 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~-~~ 340 (551)
.++|+.|++.+++. -.+.++.|+..|+.+++. ++..++ .+++|.|+..|+.+ |.++...++.+|.++... ++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 57999999999854 488999999999999864 444444 56799999999874 888999999999887542 21
Q ss_pred -----------------chHHH-hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--hhHHhhhh-CcHHHHHHHh
Q 008835 341 -----------------NKGTI-VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGAA-GAIPALIRLL 399 (551)
Q Consensus 341 -----------------~~~~i-~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~-~~i~~Lv~lL 399 (551)
+.+.+ .+.+.++.|+.+|+..+..+|.+++.+|..|+.... ++..|... ++|+.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 11122 257889999999999999999999999999986653 57777754 9999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCChHHHHHH-cCChHHHHHhhccCC----hhhHHHHHHHHHHHhcC-hhhHHHhhhCCC
Q 008835 400 CDGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAG----GGMVDEALAILAILASH-QEGKTAIGQAEP 473 (551)
Q Consensus 400 ~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~-~g~i~~Lv~lL~~~~----~~~~~~al~~L~nL~~~-~~~~~~i~~~~~ 473 (551)
++..+.++..|+..|.+|+.+..+..+++. .|+++.|+.++.... ..++..|+.+|.||..+ +.++..+.+.|+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999999999999999999998888777665 699999999998733 36889999999999985 678999999999
Q ss_pred HHHHHHHHhcCCH-------H--HHHHHHHHHHHHhcC------CHHHHHHHHHcCcHHHHHHHhhhC--ChHHHHHHHH
Q 008835 474 IPVLMEVIRTGSP-------R--NRENAAAVLWAICTG------DAEQLKIARELDAEEALKELSESG--TDRAKRKAGS 536 (551)
Q Consensus 474 v~~L~~lL~~~~~-------~--~k~~A~~~L~~L~~~------~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~ 536 (551)
++.|..+|..+.+ + ....+..++.-|+.. ++.+...+.+.|+++.|++++.+. ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999975432 1 112256666667765 245678889999999999998765 5677888888
Q ss_pred HHHHHHhH
Q 008835 537 ILELLQRI 544 (551)
Q Consensus 537 lL~~l~~~ 544 (551)
++..+.+.
T Consensus 336 tla~~irg 343 (651)
T 3grl_A 336 TVSEVIRG 343 (651)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 87777553
No 48
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.3e-14 Score=133.22 Aligned_cols=72 Identities=17% Similarity=0.349 Sum_probs=64.8
Q ss_pred CCCCCCcccccccccCcCCeec-cCcccccHHHHHHHHHh-CCCCCCC--CcccccCCCCccchhhHHHHHHHHHh
Q 008835 168 PVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDA-GHKTCPK--TQQTLLHTALTPNYVLKSLIALWCEN 239 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~-~~~~CP~--c~~~l~~~~~~~n~~l~~~i~~~~~~ 239 (551)
.....+|.||||+++|++||+. .|||+||+.||.+|+.. +..+||. |++.+...+++||..|+++++.|..+
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 3467899999999999999985 99999999999999986 4568999 99999999999999999999998664
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.52 E-value=4.1e-15 Score=127.39 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=64.4
Q ss_pred CCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC-CCCccchhhHHHHHHHHHhc
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH-TALTPNYVLKSLIALWCENN 240 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~-~~~~~n~~l~~~i~~~~~~~ 240 (551)
+++++.||||++.|.+||+++|||+||+.||..|+..+...||.||.++.. ..+.+|..+..++..|...+
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 456789999999999999999999999999999999767799999999987 77999999999999987543
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.49 E-value=4e-12 Score=134.55 Aligned_cols=278 Identities=13% Similarity=0.110 Sum_probs=218.0
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChh-----------------hH-HHHHhcCCHHHHHHhhcCCCHHH
Q 008835 265 RAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNAD-----------------NR-VCIAEAGAIPLLVELLSSTDPRT 324 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~-----------------~r-~~i~~~g~i~~Lv~lL~~~~~~~ 324 (551)
..+++.|+..|+.. |.+....++..|.++...+.. +. .++.+.+.|+.|+.+|.+.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 46789999999754 678888899999876643322 11 23345689999999999999999
Q ss_pred HHHHHHHHHhcccCCC--chHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh-HHhhhhCcHHHHHHHhc
Q 008835 325 QEHAVTALLNLSINDS--NKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLC 400 (551)
Q Consensus 325 ~~~a~~~L~nLs~~~~--~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~~~i~~Lv~lL~ 400 (551)
+..++..|..|+.... .++.|. ..++++.|+.+|.+....+|..++..|.+|+..+... +.+.-.|+++.|++++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999987533 577787 5699999999999999999999999999999887654 44455599999999998
Q ss_pred cCC----hhHHHHHHHHHHHhccCCC-hHHHHHHcCChHHHHHhhccCChh------hHH---HHHHHHHHHhcC-----
Q 008835 401 DGT----PRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGG------MVD---EALAILAILASH----- 461 (551)
Q Consensus 401 ~~~----~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~------~~~---~al~~L~nL~~~----- 461 (551)
... ..+..+++.+|.||..+.. |+..+.+.|+++.|..+|..+++. ... .++.++..|+..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 743 3678899999999998654 788899999999999999753322 223 367777777664
Q ss_pred --hhhHHHhhhCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---------cHHHHHHHhhhC-C
Q 008835 462 --QEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELD---------AEEALKELSESG-T 527 (551)
Q Consensus 462 --~~~~~~i~~~~~v~~L~~lL~~~--~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g---------~i~~L~~ll~~~-~ 527 (551)
+.++..+.+.|++..|++++... ...++..|+.++..+.++++.....+.+.. ++..|+.++.+. .
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23577889999999999999865 477999999999999999988888876643 344455555444 5
Q ss_pred hHHHHHHHHHHHHHH
Q 008835 528 DRAKRKAGSILELLQ 542 (551)
Q Consensus 528 ~~~k~~A~~lL~~l~ 542 (551)
..+|-.|..+++..-
T Consensus 379 ~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 379 FVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888887764
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.47 E-value=1.9e-14 Score=126.92 Aligned_cols=70 Identities=24% Similarity=0.486 Sum_probs=64.1
Q ss_pred CCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC-CCccchhhHHHHHHHHHh
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT-ALTPNYVLKSLIALWCEN 239 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~-~~~~n~~l~~~i~~~~~~ 239 (551)
+++++.||||++.|.+||+++|||+||+.||.+|+..+...||.||.++... .+.+|..++.++..|...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 4578999999999999999999999999999999997777899999999877 899999999999998643
No 52
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.46 E-value=1.5e-14 Score=106.33 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=50.0
Q ss_pred CcccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchh
Q 008835 173 DFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYV 228 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~ 228 (551)
.|.||||+++|.|||++ +|||+|||.||++|+.. +.+||.|++++...+++||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 99999999999999986 456999999999999998864
No 53
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=7.4e-14 Score=111.07 Aligned_cols=68 Identities=28% Similarity=0.611 Sum_probs=60.0
Q ss_pred CCCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHh-----CCCCCCCCcccccCCCCccchhhHHHH
Q 008835 166 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-----GHKTCPKTQQTLLHTALTPNYVLKSLI 233 (551)
Q Consensus 166 ~~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~-----~~~~CP~c~~~l~~~~~~~n~~l~~~i 233 (551)
....+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+.++....+.+|..+++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 33457789999999999999999999999999999999987 367899999999988899998877654
No 54
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-14 Score=113.57 Aligned_cols=66 Identities=24% Similarity=0.527 Sum_probs=58.7
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhC------CCCCCCCcccccCCCCccchhhHHHH
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG------HKTCPKTQQTLLHTALTPNYVLKSLI 233 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~------~~~CP~c~~~l~~~~~~~n~~l~~~i 233 (551)
..+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.||.++....+.+|..+++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 4577899999999999999999999999999999999853 67899999999988899998877654
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.42 E-value=6.8e-14 Score=114.76 Aligned_cols=71 Identities=23% Similarity=0.392 Sum_probs=63.2
Q ss_pred CCCCCcccccccccCcCCee-ccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHh
Q 008835 169 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCEN 239 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~ 239 (551)
.+.+++.||||++.+.+|++ ++|||+||+.||.+|+..+..+||.||.++....+.+|..+..+++.+-.-
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 45678999999999999999 999999999999999998667899999999998999999888887776443
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=1.1e-11 Score=116.15 Aligned_cols=190 Identities=23% Similarity=0.227 Sum_probs=161.9
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
+...++.|+..|.++++.++..|+..|..+.. .+++|.|+.+|.++++.++..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 34689999999999999999999999988753 367999999999999999999999999875
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 423 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 423 (551)
..++++.|+..|.++++.++..|+++|..+.. .++++.|+.+|.++++.++..|+.+|.++..
T Consensus 79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 24678999999999999999999999998853 3578999999999999999999999999843
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 424 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 424 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
...++.|..++.++++.++..|+.+|..+.. ..+++.|..++.++++.+|..|..+|.++...+
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3578999999999999999999999999853 246788999999999999999999999988765
Q ss_pred H
Q 008835 504 A 504 (551)
Q Consensus 504 ~ 504 (551)
+
T Consensus 206 ~ 206 (211)
T 3ltm_A 206 H 206 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 57
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=109.91 Aligned_cols=67 Identities=21% Similarity=0.568 Sum_probs=59.7
Q ss_pred CCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHh-----CCCCCCCCcccccCCCCccchhhHHHH
Q 008835 167 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-----GHKTCPKTQQTLLHTALTPNYVLKSLI 233 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~-----~~~~CP~c~~~l~~~~~~~n~~l~~~i 233 (551)
...+.+.+.||||++.+.+|++++|||+||+.||..|+.. +...||.|+..+....+.+|..+++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 3467789999999999999999999999999999999986 367899999999988899998877654
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.40 E-value=8.9e-12 Score=122.30 Aligned_cols=225 Identities=16% Similarity=0.102 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..++.|+..|.++++.++..|++.|..+.. .+.++.|+.+|.++++.++..|+++|..+...+....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 468999999999999999999999998852 2468899999999999999999999998864322211
Q ss_pred hhcCCcHHHHH-HHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChH
Q 008835 346 VNAGAIPDIVD-VLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 346 ~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 424 (551)
..++.|.. ++.++++.++..++++|..+..... .....+++.|+.+|.++++.++..|+.+|.++..
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 12233332 3566789999999999998863221 0122467888888888888899999999887743
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 425 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.++++.|+.++.++++.++..|+.+|..+.... ..+++.|+.++.++++.+|..|+.+|..+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 357888889888888888888888888875321 1356777888887778888888888877652
Q ss_pred HHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 505 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 505 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
..+++.|..++.+++ ++..|..+|..+
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 234555555554433 444444444443
No 59
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=112.88 Aligned_cols=70 Identities=27% Similarity=0.469 Sum_probs=63.7
Q ss_pred CCCCcccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhc
Q 008835 170 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENN 240 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~ 240 (551)
+++++.||||++.+.+|+++ +|||+||+.||.+|+.. ..+||.|+.++....+.+|..++++++.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45679999999999999988 89999999999999985 578999999999888999999999999997654
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.39 E-value=1.6e-11 Score=115.03 Aligned_cols=189 Identities=22% Similarity=0.230 Sum_probs=161.6
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHh
Q 008835 307 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 386 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (551)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+..|.++++.++..|+++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4679999999999999999999999987642 4678999999999999999999999998753
Q ss_pred hhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH
Q 008835 387 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 466 (551)
Q Consensus 387 ~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~ 466 (551)
.++++.|+.+|.+.++.++..|+.+|.++.. .+.++.|+.++.++++.++..|+.+|..+..
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 3578999999999999999999999998853 3578999999999999999999999999853
Q ss_pred HhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHHH
Q 008835 467 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 546 (551)
Q Consensus 467 ~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 546 (551)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.++..|..+|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2578999999998999999999999999853 3468889999999999999999999998875443
No 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.38 E-value=1.9e-13 Score=115.79 Aligned_cols=70 Identities=26% Similarity=0.549 Sum_probs=63.7
Q ss_pred CCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHH
Q 008835 167 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 236 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 236 (551)
...+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.||.++....+.+|..+++.|..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 3467889999999999999999999999999999999997666899999999988888999998888765
No 62
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.6e-13 Score=101.42 Aligned_cols=55 Identities=16% Similarity=0.468 Sum_probs=49.5
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCC
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 222 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~ 222 (551)
..+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.|+.++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4567899999999999999999999999999999999766788999999887654
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.38 E-value=2.6e-11 Score=112.68 Aligned_cols=186 Identities=23% Similarity=0.236 Sum_probs=162.0
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
..+..+.++..|.++++.++..|+..|..+.. .+.++.|+.+|.++++.++..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 45789999999999999999999999987753 257899999999999999999999998874
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 423 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 423 (551)
..++++.|+..|.++++.++..|+++|..+.. ..+++.|+.+|.+.++.++..|+++|.++..
T Consensus 74 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 74 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 23578999999999999999999999998753 3478999999999999999999999999853
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 424 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 424 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
.+.++.|..++.++++.++..|+.+|..+.. ..+++.|..++.++++.+|..|..+|..+-
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999998842 246888999999999999999999987754
No 64
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.3e-13 Score=106.15 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=52.7
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHH
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKS 231 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~ 231 (551)
....+.+.||||++.+.+|++++|||+||+.||.+|+.. ..+||.|+.++. ..+.+|..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 345678999999999999999999999999999999985 678999999986 55667754443
No 65
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=102.98 Aligned_cols=54 Identities=31% Similarity=0.646 Sum_probs=47.5
Q ss_pred CCCCCCCCcccccccccCcCCeecc-CcccccHHHHHHHHHhC-CCCCCCCccccc
Q 008835 166 RSPVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAG-HKTCPKTQQTLL 219 (551)
Q Consensus 166 ~~~~~~~~~~Cpic~~~~~~Pv~~~-cgh~~~~~ci~~~~~~~-~~~CP~c~~~l~ 219 (551)
....+++++.||||++.|.+||+++ |||+||+.||.+|+... ..+||.||.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456788999999999999999999 99999999999999863 478999999754
No 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.37 E-value=1.9e-13 Score=113.87 Aligned_cols=68 Identities=15% Similarity=0.376 Sum_probs=60.4
Q ss_pred CCCCCcccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCcccccCC----CCccchhhHHHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT----ALTPNYVLKSLIALWC 237 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~----~~~~n~~l~~~i~~~~ 237 (551)
.+++++.||||++.+.+|+++ +|||+||+.||.+|+.. ..+||.|+..+... .+.+|..+.+++..|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 356789999999999999997 99999999999999986 57899999998865 6788999999988774
No 67
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=1.1e-13 Score=116.83 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=61.8
Q ss_pred CCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC-------CCCccchhhHHHHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH-------TALTPNYVLKSLIALWCE 238 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~-------~~~~~n~~l~~~i~~~~~ 238 (551)
...+++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+..+.. ..+.+|..+...+..|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 4567899999999999999999999999999999998778899999999864 556788999999988853
No 68
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=100.78 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=52.3
Q ss_pred CCCCCCCcccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccc
Q 008835 167 SPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 226 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 226 (551)
...+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|+.++...++.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 34577899999999999999997 99999999999999986 6789999999988776665
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=1.2e-13 Score=120.39 Aligned_cols=64 Identities=20% Similarity=0.491 Sum_probs=52.5
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHH
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWC 237 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 237 (551)
.+++.||||++.|.+||+++|||+||..||.+|+.. ..+||.||.++... .+|..+...+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 356889999999999999999999999999999985 67899999988654 34555566665554
No 70
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.34 E-value=7e-11 Score=109.76 Aligned_cols=184 Identities=23% Similarity=0.232 Sum_probs=160.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 387 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (551)
+..+.++++|.++++.++..|+.+|..+.. .++++.|++.|.++++.++..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 567899999999999999999999997752 3678999999999999999999999988743
Q ss_pred hhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHH
Q 008835 388 AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA 467 (551)
Q Consensus 388 ~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~ 467 (551)
..+++.|+.+|.+.++.++..|+++|.++.. ..+++.|+.++.++++.++..|+.+|..+..
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 3578999999999999999999999998753 3578999999999999999999999998853
Q ss_pred hhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 468 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 468 i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
...++.|..++.+.++.+|..|+.+|..+.. ..+++.|..++.++++.++..|..+|..+.
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999842 236888999999999999999999998765
No 71
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.34 E-value=3.3e-13 Score=121.63 Aligned_cols=70 Identities=24% Similarity=0.551 Sum_probs=62.3
Q ss_pred CCCCCcccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCccccc-CCCCccchhhHHHHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLL-HTALTPNYVLKSLIALWCE 238 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~-~~~~~~n~~l~~~i~~~~~ 238 (551)
.+.+++.||||++.+.+|+++ +|||+||+.||.+|+..+...||.|+.++. ...+.+|..+..+|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 456788999999999999987 999999999999999987889999999985 4568999999999998854
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.34 E-value=3.5e-13 Score=147.64 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=69.6
Q ss_pred CCCCCCcccccccccCcCCeeccCc-ccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHhcCC
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 242 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cg-h~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 242 (551)
..+|++|.|||++++|+|||++++| +||+|.+|++|+.. +.+||.||++++...++||++++..|++||.+++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999998 69999999999986 67899999999999999999999999999998764
No 73
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=3.8e-13 Score=113.73 Aligned_cols=67 Identities=19% Similarity=0.417 Sum_probs=61.3
Q ss_pred CCCCcccccccccCcCCeec-cCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHHHHh
Q 008835 170 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCEN 239 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~ 239 (551)
+.+++.||||++++.+||++ +|||+||+.||..|+. ..||.|+.++....+.+|..+.+++..+...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 45789999999999999999 9999999999999986 6799999999888899999999999887654
No 74
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=1.7e-12 Score=108.99 Aligned_cols=68 Identities=24% Similarity=0.492 Sum_probs=59.8
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhC--CCCCCCCcccccCCCCccchhhHHHHHHHHH
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG--HKTCPKTQQTLLHTALTPNYVLKSLIALWCE 238 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~--~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 238 (551)
.+.+.||||++.+.+|++++|||+||+.||.+|+..+ ..+||.|+.++....+.+|..+..+++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999853 3689999999999899999888888776653
No 75
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=99.51 Aligned_cols=57 Identities=23% Similarity=0.610 Sum_probs=49.6
Q ss_pred CCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHh--CCCCCCCCcccccCCCC
Q 008835 167 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLHTAL 223 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~--~~~~CP~c~~~l~~~~~ 223 (551)
...+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+.++...++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3457889999999999999999999999999999999973 56789999998876543
No 76
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=1.7e-12 Score=97.41 Aligned_cols=55 Identities=24% Similarity=0.492 Sum_probs=49.1
Q ss_pred CCcccccccc-cCcCC----eeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccc
Q 008835 172 DDFRCPISLE-LMKDP----VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 226 (551)
Q Consensus 172 ~~~~Cpic~~-~~~~P----v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 226 (551)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.||.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 4689999999999999998777889999999988777665
No 77
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5e-12 Score=94.13 Aligned_cols=48 Identities=25% Similarity=0.662 Sum_probs=43.2
Q ss_pred CCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHh--CCCCCCCC
Q 008835 167 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKT 214 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~--~~~~CP~c 214 (551)
...+.+++.||||++.+.+|++++|||+||+.||.+|+.. +..+||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3457889999999999999999999999999999999985 46789987
No 78
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.25 E-value=3.1e-10 Score=111.14 Aligned_cols=201 Identities=12% Similarity=0.068 Sum_probs=160.6
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh
Q 008835 304 IAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 383 (551)
Q Consensus 304 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~ 383 (551)
+...+.++.|+..|.++++.++..|+++|.++. ..++++.|+.+|.++++.++..|+++|..+.......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345678999999999999999999999999886 2356899999999999999999999999987543221
Q ss_pred HHhhhhCcHHHHHH-HhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh
Q 008835 384 VAIGAAGAIPALIR-LLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 462 (551)
Q Consensus 384 ~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~ 462 (551)
. ..++.|.+ ++++.++.++..|+++|.++....... ...+++.|+.++.++++.++..|+.+|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 1 13344442 456788999999999999987432211 22457889999999999999999999987754
Q ss_pred hhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 463 EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 463 ~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.++++.|+.++.+.++.+|..|+.+|..+...++ .+++.|..++.++++.++..|..+|..+.
T Consensus 158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 2589999999999999999999999999865443 36788889999999999999999998775
No 79
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.24 E-value=1.1e-12 Score=114.32 Aligned_cols=69 Identities=13% Similarity=0.370 Sum_probs=57.5
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc---------CCCCccchhhHHHHHHH
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL---------HTALTPNYVLKSLIALW 236 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~---------~~~~~~n~~l~~~i~~~ 236 (551)
..++++|.||||++++.+||+++|||+||+.||.+|+..+..+||.||.++. ...+.++..+++.|..+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 4678899999999999999999999999999999999877778999998753 22355777777776543
No 80
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=115.97 Aligned_cols=70 Identities=26% Similarity=0.549 Sum_probs=63.2
Q ss_pred CCCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccchhhHHHHHHH
Q 008835 167 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 236 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 236 (551)
...++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||.++....+.+|..+.+.|..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 3467899999999999999999999999999999999987667999999999988888998888887764
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.24 E-value=2.2e-12 Score=108.95 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=56.2
Q ss_pred CCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCc-cchhhHHHHHH
Q 008835 169 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT-PNYVLKSLIAL 235 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~-~n~~l~~~i~~ 235 (551)
.+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+.++...++. ++..+..++..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 45678999999999999999999999999999999998677899999999877654 44555555544
No 82
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.24 E-value=8.4e-11 Score=133.71 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=194.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH--H--HhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCc
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVC--I--AEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 341 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~--i--~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~ 341 (551)
+.++.|+..+.++++..+..++..|..++...+..... + .-.+.+|.|++++.++++.+|..|+++|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 57899999999999999999999999998754432110 0 0124678888888999999999999999988754322
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
...-.-.+.++.+...+.+++++++..|+++|..++........-.-.++++.++..+.+.++.++..|+.++.+++...
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 11111235778888888899999999999999998764321111011257788888888888888888888888776432
Q ss_pred ChHH-------H------------------------------------------------HH---Hc----CChHHHHHh
Q 008835 422 GNKA-------R------------------------------------------------AV---RA----GIVPPLMRF 439 (551)
Q Consensus 422 ~~~~-------~------------------------------------------------l~---~~----g~i~~Lv~l 439 (551)
..+. . +. .. .+++.+.++
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKEL 367 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1110 0 00 01 133444455
Q ss_pred hccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 008835 440 LKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEAL 519 (551)
Q Consensus 440 L~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 519 (551)
+.+.+..+++.|+.+|.+++........-.-.++++.++..+.+.++.+|..|+++|.+++...+.......-.++++.|
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 55667778888888888888754322111123578889999998999999999999999886322111111123578888
Q ss_pred HHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 520 KELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 520 ~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
+..+.+++++++..|.++|..+.+.
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999988754
No 83
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.23 E-value=3.8e-12 Score=97.34 Aligned_cols=58 Identities=22% Similarity=0.520 Sum_probs=51.0
Q ss_pred CCCCCcccccccccCcCC-------eeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccch
Q 008835 169 VIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNY 227 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~P-------v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~ 227 (551)
...+++.||||++.+.+| ++++|||+||..||.+|+.. ..+||.||.++....+.+++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 456789999999999998 88999999999999999986 56899999999888777653
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=97.19 Aligned_cols=55 Identities=25% Similarity=0.535 Sum_probs=48.6
Q ss_pred CCCCCCCcccccccccCcC----CeeccCcccccHHHHHHHHHhC--CCCCCCCcccccCC
Q 008835 167 SPVIPDDFRCPISLELMKD----PVIVSTGQTYERSCIQKWLDAG--HKTCPKTQQTLLHT 221 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~----Pv~~~cgh~~~~~ci~~~~~~~--~~~CP~c~~~l~~~ 221 (551)
...+.+.+.||||++.+.+ |++++|||+||+.||.+|+..+ ..+||.||.++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3467788999999999999 9999999999999999999864 57899999987654
No 85
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=89.52 Aligned_cols=47 Identities=28% Similarity=0.764 Sum_probs=42.3
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHh--CCCCCCCC
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKT 214 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~--~~~~CP~c 214 (551)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +..+||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456788999999999999999999999999999999864 56789987
No 86
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=6.7e-12 Score=95.90 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=46.0
Q ss_pred CCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 169 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
...+++.||||++.+.+|++++|||+||..||.+|+.. ..+||.||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 34577899999999999999999999999999999985 57899999987643
No 87
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=91.86 Aligned_cols=54 Identities=22% Similarity=0.516 Sum_probs=47.9
Q ss_pred CCcccccccccCcCC-------eeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccc
Q 008835 172 DDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 226 (551)
Q Consensus 172 ~~~~Cpic~~~~~~P-------v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 226 (551)
+++.||||++.+.+| +.++|||+||..||.+|+.. +.+||.||.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 568899999999988 78999999999999999986 6789999999987776654
No 88
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=91.40 Aligned_cols=52 Identities=21% Similarity=0.490 Sum_probs=46.2
Q ss_pred CCCCCCcccccccccCcCC-------eeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 168 PVIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~P-------v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
..+.+.+.||||++.+.+| ++++|||+||..||.+|+.. +.+||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4567889999999999988 88999999999999999986 6789999988754
No 89
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=5.9e-11 Score=91.77 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=46.9
Q ss_pred CCCCCCcccccccccC--cCCeecc--CcccccHHHHHHHHHhCCCCCCCCcccccCCCC
Q 008835 168 PVIPDDFRCPISLELM--KDPVIVS--TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 223 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~--~~Pv~~~--cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~ 223 (551)
..+.+++.||||++.+ .|+++.+ |||+||+.|+.+++..+...||.||+++....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3467889999999988 4566665 999999999999997777899999999876544
No 90
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.09 E-value=5.4e-10 Score=127.05 Aligned_cols=272 Identities=14% Similarity=0.067 Sum_probs=191.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..++.++..+.+++++++..|++.|..++...+..-.... .++++.++..+.+.++.++..|+..+..++.....+..+
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 5778888888889999999999999999986654321111 247888999999999999999999999998765444322
Q ss_pred h--hcCCcHHHHHHH-----------hc-----------CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc
Q 008835 346 V--NAGAIPDIVDVL-----------KN-----------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD 401 (551)
Q Consensus 346 ~--~~g~i~~Lv~~L-----------~~-----------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~ 401 (551)
. -...++.++..+ .+ .+..++..|+.+|..|+.... ..+. ..+++.+..++.+
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFH 370 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcC
Confidence 1 123455555555 12 122357888888888875432 1111 2467888888888
Q ss_pred CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh-HHHhhhCCCHHHHHHH
Q 008835 402 GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-KTAIGQAEPIPVLMEV 480 (551)
Q Consensus 402 ~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~-~~~i~~~~~v~~L~~l 480 (551)
.+...+..|+.+|.+++........-.-.++++.++.++.++++.++..|+.+|.+++..-.. .....-.+.++.|+..
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 899999999999999998654322222356789999999999999999999999999874211 1011112567888888
Q ss_pred HhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 481 IRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 481 L~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
|.+.++.++..|+++|.+++...+...... -.++++.|..++...+......+..++..+.
T Consensus 451 L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~-l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 451 ILDSNKRVQEAACSAFATLEEEACTELVPY-LAYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhHhhHhH-HHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 888889999999999999986432211111 1357788888888777666666666666654
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.09 E-value=8.2e-11 Score=91.61 Aligned_cols=58 Identities=22% Similarity=0.511 Sum_probs=48.9
Q ss_pred CCCCCCcccccccccCcCC---eeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccc
Q 008835 168 PVIPDDFRCPISLELMKDP---VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 226 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~P---v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 226 (551)
....+++.||||++.+.+| ++++|||+||+.||.+|+.. +.+||.||.++....+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 3456788999999999876 34699999999999999975 5789999999987776665
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.08 E-value=2.7e-09 Score=115.45 Aligned_cols=264 Identities=17% Similarity=0.155 Sum_probs=183.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..++.+...+.+.++.++..|+..|..++...... ......+|.|..++.++++.++..|+.+|..++..-... .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 45677777778889999999999999998643321 223567899999999999999999999999987542211 1
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh--
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN-- 423 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-- 423 (551)
.....++.+..++.+.++.+|..++.+|..++..-.. .......++.++.++++.++.++..|+.+|..++..-..
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2345788888889888999999999999988753211 122346789999999999999999999999998864332
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 424 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 424 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
+.......+++.+..++.+.+..++..++.+|..++..-.... .....++.+..++.+.++.+|..|+..|..++..-
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 2223345677888888888888888888888887775321111 12246777888887777888888877777666422
Q ss_pred HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 504 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 504 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
+.. .....+++.|..++.+.+.+++..+..+|..+
T Consensus 395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 110 01123444455555555555555555555444
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.00 E-value=1.1e-08 Score=110.67 Aligned_cols=265 Identities=15% Similarity=0.116 Sum_probs=192.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..++.|...+.+.++.++..|+..|..++...+.. ......+|.+..+..+++...|..|+.++..++..-.. .
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~- 160 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--A- 160 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--H-
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--H-
Confidence 45667777777888999999999999998755432 12234578888888888999999999999988764322 1
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 425 (551)
.....++.+..++.++++.+|..|+.+|..++..-... ......+|.+..++++++..++..|+.+|..++..-+..
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~- 237 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-
Confidence 12346778888888999999999999999987553322 223578899999999999999999999999887643321
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 008835 426 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 505 (551)
Q Consensus 426 ~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~ 505 (551)
.....+++.+..++.+.+..++..|+.+|..++...... ......++.++.++.+.++.+|..|+..|..++..-+.
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence 233457888888888888899999999999998642211 12335789999999988999999999999998864321
Q ss_pred H-HHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 506 Q-LKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 506 ~-~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
. .....-..+++.+..++.+.++.+|..+.++|..+.
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1 111122345666666777777777777666665553
No 94
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.00 E-value=8.8e-09 Score=112.01 Aligned_cols=264 Identities=14% Similarity=0.116 Sum_probs=189.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch-HH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-GT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~ 344 (551)
..++.+...|.+.++.++..|+.++..+...+++. +.+.+++|.|..+|.++++.++..|+.+|..++.+.... ..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 56777889999999999999999999999866542 233578899999999999999999999999998764321 11
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccC---C
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY---Q 421 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~---~ 421 (551)
....+.+..|+..+...++..+...+.+|..+...++.. ...+++.+..++++.+..++..|++++.++... +
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC
Confidence 112345677888888888888888888888887543211 135678888889998999999999999999742 2
Q ss_pred ChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-Chhh-------------------HHH------hhhCC---
Q 008835 422 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEG-------------------KTA------IGQAE--- 472 (551)
Q Consensus 422 ~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~-------------------~~~------i~~~~--- 472 (551)
+.....+-..+.+.|+.++ +.++.++..|+..|..++. +++. +.+ +....
T Consensus 274 ~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~ 352 (591)
T 2vgl_B 274 SDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 352 (591)
T ss_dssp TBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHH
Confidence 2222223345567777665 4678888888888888764 1210 111 11222
Q ss_pred -CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 473 -PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 473 -~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.++.|..++.+.++..+..++..|..++...+... ...++.|+.++....+.++..+...++.+-
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 34455566667788999999999999998765332 236778888888877777777766666553
No 95
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.99 E-value=2.5e-10 Score=82.29 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=41.5
Q ss_pred CCcccccccccCcC----CeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 172 DDFRCPISLELMKD----PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 172 ~~~~Cpic~~~~~~----Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
++..||||++.+.+ |++++|||.||..||.+|+..+ .+||.||.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999966 7789999999999999999975 88999998764
No 96
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.98 E-value=1.6e-09 Score=113.46 Aligned_cols=274 Identities=15% Similarity=0.100 Sum_probs=189.8
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhC-hhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHhcccCCC
Q 008835 266 AAIDALLGKLANG--NVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 266 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~ 340 (551)
..++.|+..+.++ ++..+..|+..|..++... +..-.... ...++.++.+|.+. ++.+|..|+.++.++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988 8999999999999999754 21100011 24678899999887 79999999999998754211
Q ss_pred -ch-HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch--hHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHH
Q 008835 341 -NK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN--KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 416 (551)
Q Consensus 341 -~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~--~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~n 416 (551)
+- ......-.++.+.+.+.+++++++..++.+|..+...... ...+. .++++.++..+++.++.++..|+..+.+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 10 0111111355666666777899999999999988754321 11111 1677888888888889999999999988
Q ss_pred hccCCCh------------------HHHHHH---cCChHHHHHhhccC-------ChhhHHHHHHHHHHHhcChhhHHHh
Q 008835 417 LSIYQGN------------------KARAVR---AGIVPPLMRFLKDA-------GGGMVDEALAILAILASHQEGKTAI 468 (551)
Q Consensus 417 L~~~~~~------------------~~~l~~---~g~i~~Lv~lL~~~-------~~~~~~~al~~L~nL~~~~~~~~~i 468 (551)
++..... ...+++ ..+++.++..+.+. +..++..|..+|..|+..-.. .+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH
Confidence 8754200 001111 33566677777432 346788888999888874321 12
Q ss_pred hhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 469 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 469 ~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
. ..+++.+...+.+.+...|+.|+.+|..++.+.. ...... -..+++.|+.++.+.++.+|..|.++|..+.+..
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 2 2456777778888889999999999999997542 111111 1468999999999999999999999999998754
No 97
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.97 E-value=3.3e-10 Score=85.54 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=42.5
Q ss_pred CCcccccccccCcCC-eeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 172 DDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~~~~~~P-v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
.+..||||++.+.+| +.++|||+||..||.+|+.. +.+||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999997 67899999999999999986 5789999988763
No 98
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.97 E-value=8.8e-10 Score=83.45 Aligned_cols=52 Identities=19% Similarity=0.499 Sum_probs=43.3
Q ss_pred CCCCCcccccccccCc---CCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 169 VIPDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~---~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
...++..||||++.+. .+++++|||+||..||.+|+.. +.+||.||..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 3456788999999884 4567999999999999999986 56799999887643
No 99
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.96 E-value=5.6e-09 Score=115.36 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=154.4
Q ss_pred cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHH-HHhccCChhHHHHHHHHHHHhccCC--ChH
Q 008835 348 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALI-RLLCDGTPRGKKDAATAIFNLSIYQ--GNK 424 (551)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv-~lL~~~~~~~~~~a~~aL~nL~~~~--~~~ 424 (551)
.+.+.++++.|++++++.|..|+++|.+|+.+...+..+...++|.+++ .+|.+.+..++..|+++|.||+... +.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3456778888999999999999999999999888888888888888765 5788889999999999999999754 466
Q ss_pred HHHHHcCChHHHHHhhccCC---------------------hhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHh
Q 008835 425 ARAVRAGIVPPLMRFLKDAG---------------------GGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIR 482 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~---------------------~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~ 482 (551)
..+++.|++++|..+|.... ..+.+.++.+|++||. +.+....+...+.++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 78999999999999885411 1244568889999997 4566677888899999999885
Q ss_pred cC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcH---HHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 483 TG---SPRNRENAAAVLWAICTGDAEQLKIARELDAE---EALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 483 ~~---~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i---~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+. ...++..|+.+|..++..++.....+.+.|.. ..+..+. .++...+..+..+|.++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHhh
Confidence 42 36789999999999999999888888887643 3333333 3444456778888888753
No 100
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.5e-10 Score=87.99 Aligned_cols=53 Identities=25% Similarity=0.609 Sum_probs=46.6
Q ss_pred CCCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCC
Q 008835 168 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 222 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~ 222 (551)
..+.+.+.||||++.+.+ ++++|||+||..||.+|+. ...+||.||.++....
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 356678999999999999 9999999999999999998 5788999999887543
No 101
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=8.1e-10 Score=84.92 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=44.9
Q ss_pred CCCCCCcccccccccCcCCeec---cCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 168 PVIPDDFRCPISLELMKDPVIV---STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~---~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
....++..||||++.+.+|..+ +|||.||..||.+|+.. ..+||.||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 3566788999999999887654 99999999999999986 45899999987643
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=2.3e-10 Score=82.68 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=41.3
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
.+++.||||++.+.+|++++|||+||+.||.+| ...||.||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 467899999999999999999999999999873 56899999887643
No 103
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.94 E-value=4.1e-10 Score=81.11 Aligned_cols=48 Identities=27% Similarity=0.747 Sum_probs=42.0
Q ss_pred CCCCcccccccccCcC---Ceecc-CcccccHHHHHHHHHhCCCCCCCCcccc
Q 008835 170 IPDDFRCPISLELMKD---PVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTL 218 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~---Pv~~~-cgh~~~~~ci~~~~~~~~~~CP~c~~~l 218 (551)
+.++..||||++.+.+ ++.++ |||.||..||.+|+.. +.+||.||.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 3567889999999987 77787 9999999999999975 67899999876
No 104
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.94 E-value=4.1e-09 Score=114.60 Aligned_cols=260 Identities=16% Similarity=0.117 Sum_probs=190.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
.....++..+++.+...++-+...+..++..+++.. .-+++.|.+-|.++|+.++..|+.+|+++.. ++.
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~---- 118 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKI---- 118 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGG----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHH----
Confidence 346677888899999999888888888887655432 2356788888999999999999999999862 211
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 425 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 425 (551)
....++.+...|.+.++.+|..|+.++..+..... ..+...++++.|..+|.+.++.++..|+.+|..++.......
T Consensus 119 -~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 119 -TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp -HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred -HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 12346789999999999999999999999875432 122234788999999999999999999999999988654221
Q ss_pred -HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--
Q 008835 426 -RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG-- 502 (551)
Q Consensus 426 -~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~-- 502 (551)
.-+..+.+..|+..+.+.++..+...+.+|..++..+... ....++.+..+|++.++.++..|+.++..+...
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 1112344677888887888888888888888777542211 123567777778888899999999999998742
Q ss_pred -CHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 503 -DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 503 -~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
+++....+. ..+.+.|+.++ ++++.+|..|...|..+...
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence 233333222 33567777665 47888898888888877653
No 105
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.92 E-value=6.5e-10 Score=89.14 Aligned_cols=51 Identities=18% Similarity=0.489 Sum_probs=44.0
Q ss_pred CCCCCcccccccccCcC---CeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 169 VIPDDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~---Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
...++..||||++.+.+ ++.++|||.||..||.+|+.. +.+||.||.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34577899999999887 778999999999999999985 6789999988754
No 106
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=3.7e-10 Score=97.64 Aligned_cols=55 Identities=22% Similarity=0.529 Sum_probs=48.6
Q ss_pred CCCcccccccccCcCC-------eeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccc
Q 008835 171 PDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 226 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P-------v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 226 (551)
++++.||||++.+.+| ++++|||+||..||.+|+.. ..+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5789999999999999 89999999999999999985 5689999999987766554
No 107
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=8.9e-10 Score=84.94 Aligned_cols=50 Identities=18% Similarity=0.498 Sum_probs=43.5
Q ss_pred CCCCcccccccccCcCC---eeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 170 IPDDFRCPISLELMKDP---VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~P---v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
..++..||||++.+.++ +.++|||.||..||.+|+.. +.+||.||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 35678899999999887 67899999999999999986 5789999988754
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.89 E-value=7.4e-09 Score=114.36 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=147.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHH-HHhcCCHHHHHHHHHHHHHhcCCc--chhHH
Q 008835 309 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVD-VLKNGSMEARENAAATLFSLSVID--ENKVA 385 (551)
Q Consensus 309 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~ 385 (551)
.|.++++.|++++++.|..|+++|.||+.++..+..+...|++..++. +|.+.+.+++..|+++|.||+... +.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 355677889999999999999999999988888888888888887654 678889999999999999998654 56788
Q ss_pred hhhhCcHHHHHHHhccCC---------------------hhHHHHHHHHHHHhccCCCh-HHHHHHcCChHHHHHhhcc-
Q 008835 386 IGAAGAIPALIRLLCDGT---------------------PRGKKDAATAIFNLSIYQGN-KARAVRAGIVPPLMRFLKD- 442 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~---------------------~~~~~~a~~aL~nL~~~~~~-~~~l~~~g~i~~Lv~lL~~- 442 (551)
+...|++++|..+|.... ..+...++.+|.+||...+. ...+...|+++.|+.+|.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 889999999999986411 12334577888999875544 4467788999999999855
Q ss_pred --CChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCH--HHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 443 --AGGGMVDEALAILAILASH-QEGKTAIGQAEPI--PVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 443 --~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v--~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
....++..|+.+|.+|+.. ++....+.+.+.. ..++..+..++...+..++++|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 2457889999999999995 5556666666543 22333333445556778899999975
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.86 E-value=1.6e-09 Score=90.91 Aligned_cols=49 Identities=14% Similarity=0.324 Sum_probs=41.9
Q ss_pred CCcccccccccCcCCe------------------eccCcccccHHHHHHHHHh----CCCCCCCCcccccC
Q 008835 172 DDFRCPISLELMKDPV------------------IVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv------------------~~~cgh~~~~~ci~~~~~~----~~~~CP~c~~~l~~ 220 (551)
.+..||||++.|.+|+ +++|||.||..||.+|+.. ...+||.||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999998875 6899999999999999963 46789999988754
No 110
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.79 E-value=9.6e-10 Score=84.36 Aligned_cols=46 Identities=17% Similarity=0.383 Sum_probs=41.3
Q ss_pred CCCCcccccccccCcCCeeccCccc-ccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
+.+++.|+||++.+.+|++++|||+ ||..|+.+| ..||.||.++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3456889999999999999999999 999999998 679999988764
No 111
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.76 E-value=4.3e-08 Score=111.10 Aligned_cols=270 Identities=10% Similarity=0.080 Sum_probs=179.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-h-hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch--
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNA-D-NRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-- 342 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~-~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-- 342 (551)
.++.+...+.+.++..+..|+..|..++.... . ....+ ..++|.|+..+.++++.++..++++|+.++..-...
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 45556666778889999999999999986432 2 11222 257899999999999999999999999987531100
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--hhHHhhh--hCcHHHHHHHhccCC--hhHHHHHHHHHHH
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGA--AGAIPALIRLLCDGT--PRGKKDAATAIFN 416 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~--~~~i~~Lv~lL~~~~--~~~~~~a~~aL~n 416 (551)
..-.-...++.++..|.+. +.++..|+++|.+++..-. ....+.. ..+++.|+.++.+.+ ..++..++.+|..
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 0001134577788888775 8999999999998864311 0111111 256788888887543 6789999999999
Q ss_pred hccCCChHH-HHHHcCChHHHHHhhccC---------------ChhhHHHHHHHHHHHhcChhhHHHhh--hCCCHHHHH
Q 008835 417 LSIYQGNKA-RAVRAGIVPPLMRFLKDA---------------GGGMVDEALAILAILASHQEGKTAIG--QAEPIPVLM 478 (551)
Q Consensus 417 L~~~~~~~~-~l~~~g~i~~Lv~lL~~~---------------~~~~~~~al~~L~nL~~~~~~~~~i~--~~~~v~~L~ 478 (551)
+....+... ..+ ..+++.+++.+... ...++..++.+|.+++..-.. .+. -...++.++
T Consensus 527 l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~ 603 (861)
T 2bpt_A 527 MVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFF 603 (861)
T ss_dssp HHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHH
T ss_pred HHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHH
Confidence 887544322 222 23566666666431 234567788888888764221 111 124677788
Q ss_pred HHHhcCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 479 EVIRTGSP-RNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 479 ~lL~~~~~-~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
..+.+.+. .+++.++.++..++...+....... ..+++.|...+.+.++.++..|..++..+.+
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 88887766 8899999888888754322211112 2378888888877788899999888887654
No 112
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=3.2e-09 Score=106.26 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=45.2
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCC
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 222 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~ 222 (551)
...||||++.+.+|+.++|||+||..|+..|+..+..+||.||.++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 37899999999999999999999999999999866789999999887543
No 113
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.72 E-value=4.9e-07 Score=98.71 Aligned_cols=252 Identities=14% Similarity=0.090 Sum_probs=185.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..++.+...|.+.++.++..|+.++..+...+++.. .++++.+..+|.+.|+.++..|+.+|..++.........
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 457888889999999999999999999998776533 267888999999999999999999999998653221111
Q ss_pred hhcCCcHHHHHHHhc---------------CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc------CCh
Q 008835 346 VNAGAIPDIVDVLKN---------------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD------GTP 404 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~---------------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~------~~~ 404 (551)
-...++.++.+|.+ .++-.+...+.+|..++..+... ....++.|..++.. .+.
T Consensus 217 -~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 217 -FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp -HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHH
T ss_pred -HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHH
Confidence 13678888888864 36888888999999988654321 12345555555532 235
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC
Q 008835 405 RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG 484 (551)
Q Consensus 405 ~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~ 484 (551)
.+...|++++.++...+ .+. ..++..|..++.+.++.++..|+..|..++.... ..+. .....++..+.+.
T Consensus 292 aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~--~~~~~i~~~l~d~ 362 (618)
T 1w63_A 292 AILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQ--RHRSTIVDCLKDL 362 (618)
T ss_dssp HHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHG--GGHHHHHHGGGSS
T ss_pred HHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH--HHHH--HHHHHHHHHccCC
Confidence 77888999999875532 222 2467889999988899999999999999886421 1221 3567788888888
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 485 SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 485 ~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
+..+|..|+.+|..++.... ... ++..|...+.+.+.+.|..+...|..+..
T Consensus 363 d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 89999999999999997652 111 35667777777888888888888877754
No 114
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.71 E-value=3.2e-07 Score=84.11 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCC-CchH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKG 343 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~ 343 (551)
.+.+..|..+|...|+.++..++..|..+.+.-+..-....=...+|.++.++.+.|..+...|+.+|..|-.+. -...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 468899999999999999999999999999875444444444467999999999999999999999999987753 2333
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 423 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 423 (551)
.+.. .+..+..+++++++-...+|+..+..+...... .+++..+..++.+.+.+++..++.+|.|++...++
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 3322 357788888999999999999999999443322 35677888899889999999999999999986543
Q ss_pred HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHH--hcCCHHHHHHHHHH
Q 008835 424 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI--RTGSPRNRENAAAV 495 (551)
Q Consensus 424 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL--~~~~~~~k~~A~~~ 495 (551)
.. +-.+++.-+-.+|++.++.+++.|+.+|..+.+.+-....+.+.-.+...++-| ..|.|..+..|-.+
T Consensus 184 ~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 184 SG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 32 123456667888999999999999999999988753211111111222333322 24778888777544
No 115
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.70 E-value=5.1e-07 Score=102.43 Aligned_cols=273 Identities=15% Similarity=0.097 Sum_probs=188.3
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHh--cCCHHHHHHhhcCC--CHHHHHHHHHHHHhcccC-
Q 008835 266 AAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAE--AGAIPLLVELLSST--DPRTQEHAVTALLNLSIN- 338 (551)
Q Consensus 266 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~- 338 (551)
..++.|+..+.++ ++..+..++..|..++..... ..+.. ...++.+...+.++ +..++..|+.+|.++...
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999988 899999999999999865321 11111 24677788888876 689999999999988643
Q ss_pred CCc-hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh-HHhhhhCcHHHHHHHhccCChhHHHHHHHHHHH
Q 008835 339 DSN-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 416 (551)
Q Consensus 339 ~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~n 416 (551)
..+ .........++.+...+.+.+.+++..++.+|..+....... .......+++.++..+.+.++.++..|+..+.+
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 111 001111225666777777778999999999999887533211 111223678888888888888999999998888
Q ss_pred hccCCC---------------------hHHHHHHcCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHHh
Q 008835 417 LSIYQG---------------------NKARAVRAGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAI 468 (551)
Q Consensus 417 L~~~~~---------------------~~~~l~~~g~i~~Lv~lL~~-------~~~~~~~~al~~L~nL~~~~~~~~~i 468 (551)
++.... ....-.-..+++.++..+.. .+..++..|..+|..++..-.. .+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~ 363 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hh
Confidence 875320 00000113356677777752 3456788888888888764321 12
Q ss_pred hhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 469 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 469 ~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
.. .+++.+...+.+.++..|+.|+.+|..++.+.. ....... ..+++.|+..+.+.++.++..|.++|..+.+.
T Consensus 364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 21 355666677777889999999999999997653 3333222 34789999999999999999999999998765
No 116
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.69 E-value=8.4e-07 Score=96.82 Aligned_cols=256 Identities=16% Similarity=0.108 Sum_probs=180.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 346 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 346 (551)
.....+..+++.+.+.++-+.-.+..++..+++.... ++..|.+-|.++++.++..|+++|+++... .+.
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~ 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH
Confidence 4555667777888888888877888888765543222 367888889999999999999999999731 222
Q ss_pred hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHH
Q 008835 347 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 426 (551)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 426 (551)
...++.+...|.+.++.+|..|+.++.++..... . +. .++++.+..+|.+.++.++..|+.+|..++........
T Consensus 141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~-~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--E-LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--G-GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--H-HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3567889999999999999999999999875332 1 11 26788888899999999999999999999875432211
Q ss_pred HHHcCChHHHHHhhcc---------------CChhhHHHHHHHHHHHhcCh-hhHH------------------------
Q 008835 427 AVRAGIVPPLMRFLKD---------------AGGGMVDEALAILAILASHQ-EGKT------------------------ 466 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~---------------~~~~~~~~al~~L~nL~~~~-~~~~------------------------ 466 (551)
.. ...++.++.+|.+ .++..+..++.+|..++... +...
T Consensus 216 ~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 216 HF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp HH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 11 2567777776653 35666777777777776532 1110
Q ss_pred -----Hhhh--------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHH
Q 008835 467 -----AIGQ--------AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRK 533 (551)
Q Consensus 467 -----~i~~--------~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~ 533 (551)
.+.. ..++..|..+|.++++.+|..|+..|..++...+.. +. .....++..+.+.+..+|++
T Consensus 295 ~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHH
Confidence 0000 024566677777777788888888888777654432 22 24567777788889999999
Q ss_pred HHHHHHHHHh
Q 008835 534 AGSILELLQR 543 (551)
Q Consensus 534 A~~lL~~l~~ 543 (551)
|..+|..+..
T Consensus 370 alelL~~l~~ 379 (618)
T 1w63_A 370 AMELSFALVN 379 (618)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcc
Confidence 9998887753
No 117
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.68 E-value=4.2e-09 Score=90.85 Aligned_cols=56 Identities=23% Similarity=0.566 Sum_probs=49.2
Q ss_pred CCCcccccccccCcCC-------eeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCCccch
Q 008835 171 PDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNY 227 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P-------v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~ 227 (551)
++.+.||||++.+.+| +.++|||+||..||.+|+.. ..+||.||.++...++.|++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 5678999999999887 88999999999999999986 57899999999877776653
No 118
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=7.6e-09 Score=79.56 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=40.1
Q ss_pred CCCcccccccccCcCCeeccCccc-ccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
.+++.||||++.+.+|++++|||+ ||..|+.+ ...||.||.++...
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 456789999999999999999999 99999964 36799999988653
No 119
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.4e-08 Score=79.24 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=39.6
Q ss_pred CCcccccccccCcC--------------Ceec-cCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 172 DDFRCPISLELMKD--------------PVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~~~~~~--------------Pv~~-~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
++..|+||++.+.+ ++.+ +|||.|+..||.+|+.. +.+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45679999998876 4454 59999999999999986 5689999988754
No 120
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.64 E-value=5.6e-07 Score=102.08 Aligned_cols=275 Identities=15% Similarity=0.093 Sum_probs=187.0
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCC-c
Q 008835 266 AAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS-N 341 (551)
Q Consensus 266 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~ 341 (551)
..++.+...+.++ ++.++..|+++|..++..-..+- .......+++.+...+.+.+.+++..++.+|..+..... .
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 5677788888776 68899999999998875322111 001112357788888888899999999999999876322 1
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-------------------hhHHh--hhhCcHHHHHHHhc
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-------------------NKVAI--GAAGAIPALIRLLC 400 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-------------------~~~~i--~~~~~i~~Lv~lL~ 400 (551)
-...+....++.++..+.+.++.++..|+.++..++.... ....+ .-...++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 1222233678888888888888999999988888764310 00000 01246777778775
Q ss_pred c-------CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChh--hHHHhhhC
Q 008835 401 D-------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE--GKTAIGQA 471 (551)
Q Consensus 401 ~-------~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~--~~~~i~~~ 471 (551)
. .+...+..|+.+|..++..-+. .++ ..+++.+...+.+.+..+++.|+.+|..++.... ...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 3 3457788888888888754221 111 2456666677777889999999999999998532 222222 2
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhHH
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL-KIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 545 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 545 (551)
..++.++..+.+.++.+|..|+++|.+++...+... ..-.-..+++.|+..+.+. ++++..|.++|..+.+..
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 478899999998889999999999999997532210 0000124677777777764 889999999999887653
No 121
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.60 E-value=2.3e-07 Score=105.07 Aligned_cols=272 Identities=13% Similarity=0.135 Sum_probs=179.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhh---HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCC--
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN---RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS-- 340 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~---r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-- 340 (551)
..++.++..+.+.++.++..+++.|..++...... ...+ ...+|.|+..|.++ +.++..|+++|.+++..-.
T Consensus 411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~ 487 (861)
T 2bpt_A 411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccc
Confidence 35677888888889999999999999888642110 1111 24578888888775 8999999999999875311
Q ss_pred chHHHh--hcCCcHHHHHHHhcCC--HHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccC--------------
Q 008835 341 NKGTIV--NAGAIPDIVDVLKNGS--MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-------------- 402 (551)
Q Consensus 341 ~~~~i~--~~g~i~~Lv~~L~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~-------------- 402 (551)
....+. -...++.|+..+.+.+ +.++..++.++..+.........-.-...+|.+++.+...
T Consensus 488 ~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~ 567 (861)
T 2bpt_A 488 TPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567 (861)
T ss_dssp SSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHH
Confidence 011111 1345777888887543 6789899999988875433221111124667777776531
Q ss_pred -ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCCh-hhHHHHHHHHHHHhcChhh--HHHhhhCCCHHHHH
Q 008835 403 -TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG-GMVDEALAILAILASHQEG--KTAIGQAEPIPVLM 478 (551)
Q Consensus 403 -~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-~~~~~al~~L~nL~~~~~~--~~~i~~~~~v~~L~ 478 (551)
...++..++.+|.+++..-+....-.-..+++.++..+.+.+. .+++.++.++..++..... ...+- ..++.++
T Consensus 568 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~ 645 (861)
T 2bpt_A 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLL 645 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHH
Confidence 2345678888888887643321111112467777888877666 8899999999988864222 22222 3788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCC--hHHHHHHHHHHHHHHh
Q 008835 479 EVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGT--DRAKRKAGSILELLQR 543 (551)
Q Consensus 479 ~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~k~~A~~lL~~l~~ 543 (551)
..+.+.++.++..|+.++..++..-+....... ..+++.++..+.+.+ +.++..+..++..+..
T Consensus 646 ~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 646 KALNQVDSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence 888777788999999999888864432211111 346777777777664 7889989888877754
No 122
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.56 E-value=3.4e-08 Score=73.18 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=42.5
Q ss_pred CCCcccccccccCcCCeec--cCccc-ccHHHHHHHHHhCCCCCCCCccccc
Q 008835 171 PDDFRCPISLELMKDPVIV--STGQT-YERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~--~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
+++..|+||++...+++++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3567899999999999987 99999 899999999974 567999999875
No 123
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.55 E-value=3.7e-07 Score=95.31 Aligned_cols=233 Identities=15% Similarity=0.122 Sum_probs=161.1
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch
Q 008835 266 AAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 266 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
..++.++..|.+. ++.++..|++++..+...-..+- ......-.++.|...+.++++.++..++.+|..++......
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888877 78999999999988653211110 00111114677778888889999999999999987532211
Q ss_pred -HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc------------------hhHHhhh---hCcHHHHHHHhc
Q 008835 343 -GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE------------------NKVAIGA---AGAIPALIRLLC 400 (551)
Q Consensus 343 -~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~------------------~~~~i~~---~~~i~~Lv~lL~ 400 (551)
...+..+.++.++..+++.+++++..|+.++..++.... ....+.. ...+|.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 331 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH
Confidence 111111667778888888889999999998888764320 0001111 246677777775
Q ss_pred cC-------ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH--HHhhhC
Q 008835 401 DG-------TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK--TAIGQA 471 (551)
Q Consensus 401 ~~-------~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~--~~i~~~ 471 (551)
.. +...+..|+.+|..|+..-+. .++ ..+++.+...+.+.+..+++.|+.+|..++...... .... .
T Consensus 332 ~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~ 407 (462)
T 1ibr_B 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (462)
T ss_dssp CCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-T
T ss_pred hcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-H
Confidence 32 346788899999988764432 122 346677778888888999999999999999753211 1111 3
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTG 502 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~ 502 (551)
.+++.++..|.+.++.+|..|+++|.+++..
T Consensus 408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999864
No 124
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.54 E-value=3.6e-08 Score=72.79 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCcccccccccCcCCeec--cCccc-ccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 172 DDFRCPISLELMKDPVIV--STGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~--~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
.+..|+||++...+++++ ||||. ||..|+.+|+.. +..||.||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 356799999999999987 99998 999999999975 4789999998753
No 125
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.51 E-value=1.1e-07 Score=112.40 Aligned_cols=271 Identities=12% Similarity=0.061 Sum_probs=188.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..+..|+..+.++|.+.+..|...|.+........-..-.....++.|++.|.+.++.+|..|+.+|.+++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 5688899999999999999999999887653211000001124578899999999999999999999999864222 11
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh------HHhhhhCcHHHHHHHhc-cCChhHHHHHHHHHHHhc
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK------VAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLS 418 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~------~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~ 418 (551)
-...++.++..|.+++..+|..|+.+|..++..-... ..-.....+|.|+..+. +++...+..|+.+|..++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1235677888888888889999999888876432211 11122368899999998 478899999999999988
Q ss_pred cCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCC-HHHHHHHHHHHH
Q 008835 419 IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLW 497 (551)
Q Consensus 419 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~-~~~k~~A~~~L~ 497 (551)
...+....-.-..+++.|+..|.+++..++..|+.+|..++...... +. ...++.++..|.... +..+..++.++.
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 52211000011345677778888888899999999999998753321 11 246888888887653 456777888888
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 498 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 498 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
.++...+..... .-..+++.++..+.+.++.+|..|..++..+.+
T Consensus 240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 877643321110 013578899999888889999999988887755
No 126
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.51 E-value=6.4e-08 Score=79.28 Aligned_cols=47 Identities=19% Similarity=0.422 Sum_probs=39.8
Q ss_pred CCcccccccccCcCC------------------eeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 172 DDFRCPISLELMKDP------------------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 172 ~~~~Cpic~~~~~~P------------------v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
++-.|+||++.|.+| +.++|||.|+..||.+|+.. +.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356799999998876 33799999999999999985 788999998764
No 127
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=2.9e-08 Score=80.01 Aligned_cols=66 Identities=12% Similarity=0.328 Sum_probs=47.4
Q ss_pred CCcccccccccCcCCeec---cCcccccHHHHHHHHHh----C---CCCCCC--Cccc--ccCCCCccchhhHHHHHHHH
Q 008835 172 DDFRCPISLELMKDPVIV---STGQTYERSCIQKWLDA----G---HKTCPK--TQQT--LLHTALTPNYVLKSLIALWC 237 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~---~cgh~~~~~ci~~~~~~----~---~~~CP~--c~~~--l~~~~~~~n~~l~~~i~~~~ 237 (551)
+.+.||||++.+.+|+.+ +|||.||+.|+..|+.. | ...||. |+.. +....+ .+.....+++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 578999999999999764 69999999999999973 3 247999 9987 544322 1222344455554
Q ss_pred H
Q 008835 238 E 238 (551)
Q Consensus 238 ~ 238 (551)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 3
No 128
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.45 E-value=7.5e-07 Score=85.00 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=139.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH-HHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHhcccCCCchHHHhh
Q 008835 270 ALLGKLANGNVEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVN 347 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 347 (551)
.+.+.+.+.+|..+..|+..|..+....+... ..+ ..+++.|...|. +.+..++..|+.++..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 47788889999999999999999987633211 001 135778888895 89999999999999999853211111112
Q ss_pred cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC-h--H
Q 008835 348 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-N--K 424 (551)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~--~ 424 (551)
...++.+++.+.+.+..++..|..+|..+...... ..+++.+...|++.++.++..++.+|..+....+ . -
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 44789999999999999999999999998764321 2467888999999999999999999999654322 1 1
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 425 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 425 ~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
...+ ..+++.|+.++.+.+..++..|..++..++..
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1222 36799999999999999999999999998864
No 129
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.41 E-value=3.9e-08 Score=76.17 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=40.1
Q ss_pred CCCcccccccccCcCCeeccCccc-ccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
.++..|+||++.+.+|+++||||. ||..|+..| ..||.||.++...
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 345689999999999999999999 999999877 3799999988643
No 130
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.39 E-value=1.9e-06 Score=82.20 Aligned_cols=184 Identities=13% Similarity=0.085 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhHHhhhhCcHHHHHHHhc-cCChhHHHHHHHHHHHhccCCChHHHHHH
Q 008835 352 PDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVR 429 (551)
Q Consensus 352 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~l~~ 429 (551)
+.+.+.+.+.++..|..|+..|..+... +.....- -..+++.|..++. +.+..++..|+.+|..|+..-.....-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4588888899999999999999888654 2111000 1256788888894 88999999999999999853222111222
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CCHHH-H
Q 008835 430 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT-GDAEQ-L 507 (551)
Q Consensus 430 ~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~-~~~~~-~ 507 (551)
..+++.|+..+.+.+..+++.|..+|.+++..... ...++.+...|++.++.+|..++..|..+.. .++.. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34789999999999999999999999999875321 1357788888998899999999999999543 33321 1
Q ss_pred HHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 508 KIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 508 ~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
.... ..+++.|..++.+.++++|..|..+|..+..
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1122 2578999999999999999999999988754
No 131
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.37 E-value=2.9e-05 Score=84.48 Aligned_cols=255 Identities=13% Similarity=0.107 Sum_probs=177.4
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 266 AAIDALLGKL--ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 266 ~~i~~Lv~~L--~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
..++.+...| .+.++.++..|+.++..+...+++.- ...+.++.|.++|.+.|+.++..|+.++..++.+...
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4566777888 78899999999999999998666432 2248999999999999999999999999998764321
Q ss_pred HHhhcCCcHHHHHHHh----cC-------------CHHHHHHHHHHHHHhcCCcc--hhHHhhhhCcHHHHHHHhc----
Q 008835 344 TIVNAGAIPDIVDVLK----NG-------------SMEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRLLC---- 400 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~----~~-------------~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~lL~---- 400 (551)
.+ ...++.+++.|. .+ ++-.+.....+|..++..++ ....+. ..+..++..+.
T Consensus 221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK 296 (621)
T ss_dssp HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence 11 123455554443 22 56788888888888875432 222222 24444443321
Q ss_pred -----cCC--hhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCC
Q 008835 401 -----DGT--PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP 473 (551)
Q Consensus 401 -----~~~--~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~ 473 (551)
+.+ ..+...|+.++..+...+ .++ ..++..|..+|.+.++.++..|+..|..++........+. ..
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEP----NLL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcH----HHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HH
Confidence 112 267778888888886322 111 1357788899988899999999999999987543222332 46
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 474 IPVLMEVIR-TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 474 v~~L~~lL~-~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
...++..|. +.+..++..|+.+|..++.. .+... ++..|...+...+...++.+...+..+..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 788888888 88899999999999999954 33332 45567777777788888888777776653
No 132
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=3.6e-07 Score=68.43 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=39.8
Q ss_pred CCCcccccccccCcCCeeccCccc-ccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
.++..|+||++...+++++||||. ||..|+.. ...||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 457889999999999999999999 99999984 4689999998764
No 133
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.34 E-value=1.8e-06 Score=101.89 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=163.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCch--
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-- 342 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-- 342 (551)
...++.+++.|.+.++.+|..|+..|..++...+. ..+ ...++.|+..|.++++.+|..|+.+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 46788899999999999999999999999865433 111 235788889898989999999999999887532111
Q ss_pred ----HHHhhcCCcHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 343 ----GTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 343 ----~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
..-.....++.|+..+. ++++.++..|+.+|..++........-.-...++.|+..|.+.+..++..|+.+|..+
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11123457888999998 4789999999999998874211000001135677788888888889999999999999
Q ss_pred ccCCChHHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhcChhhHHHhhh--CCCHHHHHHHHhcCCHHHHHHHHH
Q 008835 418 SIYQGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRTGSPRNRENAAA 494 (551)
Q Consensus 418 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~-~~~~~~al~~L~nL~~~~~~~~~i~~--~~~v~~L~~lL~~~~~~~k~~A~~ 494 (551)
+...+.. + -...++.|+..|.+.+ ..++..++.++..++..... .+.. ...++.++..+.+.++.+|+.|+.
T Consensus 203 ~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 203 VMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8765432 1 2346888888886543 35666778888877763211 2222 357899999998888899999999
Q ss_pred HHHHHhcCC
Q 008835 495 VLWAICTGD 503 (551)
Q Consensus 495 ~L~~L~~~~ 503 (551)
++..++...
T Consensus 278 ~l~~l~~~~ 286 (1230)
T 1u6g_C 278 AFESFVRRC 286 (1230)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHHC
Confidence 998887643
No 134
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=6.3e-07 Score=69.28 Aligned_cols=53 Identities=15% Similarity=0.386 Sum_probs=43.4
Q ss_pred CCCCCcccccccccC--cCCeeccCc-----ccccHHHHHHHHHhC-CCCCCCCcccccCC
Q 008835 169 VIPDDFRCPISLELM--KDPVIVSTG-----QTYERSCIQKWLDAG-HKTCPKTQQTLLHT 221 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~--~~Pv~~~cg-----h~~~~~ci~~~~~~~-~~~CP~c~~~l~~~ 221 (551)
...++..|+||++-+ .+|+++||+ |.|...||++|+... ..+||+|+..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 344567899999776 478889996 999999999999864 46899999988643
No 135
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.32 E-value=9.6e-08 Score=95.20 Aligned_cols=46 Identities=13% Similarity=0.414 Sum_probs=41.6
Q ss_pred CCCCcccccccccCcCCeeccCccc-ccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~-~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
+.+++.||||++.+.+|++++|||+ ||+.|+..| ..||.||.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4567899999999999999999999 999999988 679999998764
No 136
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.30 E-value=1.1e-05 Score=74.03 Aligned_cols=223 Identities=13% Similarity=0.057 Sum_probs=162.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCc-hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hhHH
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVA 385 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~-~~~~ 385 (551)
+.+..|..+|...|+.++.+|+.+|..+-..-+. .....-...++.+++++++.+..+.-.|+.+|..|-...+ ....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4577899999999999999999999999875322 2223335579999999999999999999999998876543 2222
Q ss_pred hhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH
Q 008835 386 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK 465 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~ 465 (551)
+. .++..|.+++.++++-....|+..+..|......+ +++..+..++.+.+..++..++.+|.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 21 35678888899999999999999999984332222 34667888888899999999999999999854322
Q ss_pred HHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH--HHHHHHHcCcHHHHHHHh-hhCChHHHHHHHHHHHHHH
Q 008835 466 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE--QLKIARELDAEEALKELS-ESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 466 ~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~ll-~~~~~~~k~~A~~lL~~l~ 542 (551)
..+ .+.+.-+-.+|++.++.+++.|..+|..+.+..-. ....+ .++....-.+. ..|.|..+.+|...-..+.
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSSCHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 211 14566677889999999999999999999876410 00000 01222222344 5688999999987766654
No 137
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.29 E-value=5.7e-05 Score=82.23 Aligned_cols=255 Identities=11% Similarity=0.081 Sum_probs=175.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL--SSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
-.+..+...|.++++..+.-|+..|.++.. ++. . ...+|.+.++| .+.++-+|..|+.++.++....+ +
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~----~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~ 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS--REM----A-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--D 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHH----H-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHH----H-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--h
Confidence 356778888999999999999999999853 332 2 24568899999 88999999999999999876321 2
Q ss_pred HHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhc----cC-------------ChhH
Q 008835 344 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC----DG-------------TPRG 406 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~----~~-------------~~~~ 406 (551)
.+-..+.++.+.++|.+.++.++.+|+.+|..++..+.. . -...+|.+++.|. .+ ++=.
T Consensus 182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 222258899999999988999999999999998754321 1 1234555554443 22 3556
Q ss_pred HHHHHHHHHHhccCCC--hHHHHHHcCChHHHHHhhcc---------C--ChhhHHHHHHHHHHHhcChhhHHHhhhCCC
Q 008835 407 KKDAATAIFNLSIYQG--NKARAVRAGIVPPLMRFLKD---------A--GGGMVDEALAILAILASHQEGKTAIGQAEP 473 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~--~~~~l~~~g~i~~Lv~lL~~---------~--~~~~~~~al~~L~nL~~~~~~~~~i~~~~~ 473 (551)
+...+..|..++..++ ....+.+ .+..++..+.+ . ...+...|+.++..+...++... .+
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~ 330 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA 330 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence 7777777777775432 2222222 34444433321 1 22677778888888864443222 35
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh-hCChHHHHHHHHHHHHHHh
Q 008835 474 IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 474 v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~l~~ 543 (551)
+..|..+|.+.++.+|-.|+..|..++...+. . .++. .....++..+. +.+..++.+|..+|..+..
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~-~~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFS-H-EAVK-THIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H-HHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H-HHHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 67788888888899999999999999987642 1 1222 24566777777 8888999999998887754
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.27 E-value=1.4e-07 Score=80.91 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=92.9
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHh
Q 008835 307 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 386 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (551)
...++.|+.+|.++++.+|..|+++|.++.. ..++.|+..|++.++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4678899999999999999999988887642 136899999999999999999999998753
Q ss_pred hhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH
Q 008835 387 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI 457 (551)
Q Consensus 387 ~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~n 457 (551)
..+++.|+.+|++.++.++..|+++|.++.. ..+++.|..++.+.+..++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2468999999999999999999999999852 2468889999988888899988887754
No 139
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.26 E-value=1.1e-07 Score=81.70 Aligned_cols=120 Identities=22% Similarity=0.168 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
..++.++..|.+.++.++..|++.|..+.. ..++.|+.+|.++++.+|..|+++|+++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 567888899998888888888887765532 137999999999999999999999998852
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
..+++.|+..|+++++.++..|+++|..+.. ..+++.|+.++++.+..++..|+.+|.+|
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2358999999999999999999999998852 34789999999988899999999988653
No 140
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.6e-06 Score=81.68 Aligned_cols=191 Identities=8% Similarity=0.099 Sum_probs=136.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HHhhChhhHHHHHh-cCCHHHHHHhh-cCCCHHHHHHHHHHHHhcccCCC--chHH
Q 008835 270 ALLGKLANGNVEEQRAAAGELRL-LAKRNADNRVCIAE-AGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDS--NKGT 344 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~--~~~~ 344 (551)
.+...+.+.+|..+.+|+..|.. +..+++.....-.+ ...+..|.+.+ .+.+..++..|+.+|..|+..-. .-..
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35677889999999999999999 87543321100001 13467888888 68899999999999999985321 1110
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh--hhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG--AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 422 (551)
-...-.++.+++.+++....++..+..+|..+...-+. .... -...++.|+..|++.++.++..++.+|..+.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 11123688999999888888988888888777643211 0010 12467888899999999999999999999886544
Q ss_pred hH-HH---HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 423 NK-AR---AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 423 ~~-~~---l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
.. .. .+...+++.|.+++.+.+..++..|..++..++..
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 21 12 22367899999999999999999999999988753
No 141
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.19 E-value=2.2e-07 Score=77.16 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=0.4
Q ss_pred CcccccccccCcCCe-----------------e-ccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 173 DFRCPISLELMKDPV-----------------I-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv-----------------~-~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
+-.|+||++.|.+|. . ++|||.|+..||.+|+.. +.+||+||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 347999999987743 2 589999999999999986 778999998754
No 142
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.11 E-value=9.2e-05 Score=75.88 Aligned_cols=264 Identities=11% Similarity=0.085 Sum_probs=174.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHH--HHHHhhcC-CCHHHHHHHHHHHHhcccCCCchHHHhhcC--C
Q 008835 276 ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIP--LLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAG--A 350 (551)
Q Consensus 276 ~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~--~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~ 350 (551)
..+++-.+..+...+..++..+......+. ..+. -++..|.+ .+...+..++.+|..|...++.|..+.+.+ .
T Consensus 135 ~~dd~~~ll~a~~l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~ 212 (480)
T 1ho8_A 135 KGDFQTVLISGFNVVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKF 212 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHH
T ss_pred cccchHHHHHHHHHHHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccch
Confidence 344444556666666666533322111110 1112 34455555 345667788999999988888888887532 4
Q ss_pred cHHHHHHHhc---------------C--CHHHHHHHHHHHHHhcCCcchhHHhhhhCcH--HHHHHHhccC-ChhHHHHH
Q 008835 351 IPDIVDVLKN---------------G--SMEARENAAATLFSLSVIDENKVAIGAAGAI--PALIRLLCDG-TPRGKKDA 410 (551)
Q Consensus 351 i~~Lv~~L~~---------------~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i--~~Lv~lL~~~-~~~~~~~a 410 (551)
++.++.+++. + ...++.+++-+++-||..++....+...+.. +.|+.+++.. .+++.+-+
T Consensus 213 ~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~ 292 (480)
T 1ho8_A 213 MPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLC 292 (480)
T ss_dssp HHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred hHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHH
Confidence 6777665542 1 2567889999999999998877777766643 6777777764 57899999
Q ss_pred HHHHHHhccCCC-hH----HHHH-HcCChHHHHHhhcc---CChhhHHHHHHHHHHH-------h---------------
Q 008835 411 ATAIFNLSIYQG-NK----ARAV-RAGIVPPLMRFLKD---AGGGMVDEALAILAIL-------A--------------- 459 (551)
Q Consensus 411 ~~aL~nL~~~~~-~~----~~l~-~~g~i~~Lv~lL~~---~~~~~~~~al~~L~nL-------~--------------- 459 (551)
+.+|.|+..... +. ..++ ..++ .++++.|.. .|+++.+..-.+...| +
T Consensus 293 la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~ 371 (480)
T 1ho8_A 293 ISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLC 371 (480)
T ss_dssp HHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcc
Confidence 999999988652 22 2222 3344 556666654 5666655432222222 1
Q ss_pred cChhhHH---------HhhhC--CCHHHHHHHHhc----------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHH
Q 008835 460 SHQEGKT---------AIGQA--EPIPVLMEVIRT----------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEA 518 (551)
Q Consensus 460 ~~~~~~~---------~i~~~--~~v~~L~~lL~~----------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~ 518 (551)
-+|.++. .+.+. ..+..|+++|.+ .++.+..-|+.=|..++...|..+..+-+.|+-..
T Consensus 372 WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~ 451 (480)
T 1ho8_A 372 WSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKAD 451 (480)
T ss_dssp CCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHH
T ss_pred cCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHH
Confidence 1222322 22222 357899999974 24667777888889999988888888889999999
Q ss_pred HHHHhhhCChHHHHHHHHHHHHHH
Q 008835 519 LKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 519 L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
+++++.+.++++|..|..+++-+-
T Consensus 452 VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 452 IMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 143
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.5e-05 Score=76.37 Aligned_cols=190 Identities=9% Similarity=0.084 Sum_probs=136.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-hcCC-cchhHHhhh-hCcHHHHHHHh-ccCChhHHHHHHHHHHHhccCCC-hHHH-
Q 008835 353 DIVDVLKNGSMEARENAAATLFS-LSVI-DENKVAIGA-AGAIPALIRLL-CDGTPRGKKDAATAIFNLSIYQG-NKAR- 426 (551)
Q Consensus 353 ~Lv~~L~~~~~~~~~~aa~~L~~-Ls~~-~~~~~~i~~-~~~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~-~~~~- 426 (551)
.+.+.+.+.++.-|..|+..|.. +... .+....-.. ...+..|...+ ++.+..++..|+.+|..|+..-. ....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 46677888999999999999998 7632 111100111 24677888888 67888999999999999985322 1111
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhh--hCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 427 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG--QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~--~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
-.-.-+++.+++.+.+....+++.+..+|..++.+-.- .... -..+++.|+..|++.++.+|+.++.+|..++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 11123688999999988889999999998888874211 0000 01356788888888899999999999999886543
Q ss_pred ---HHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 505 ---EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 505 ---~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
......+...+++.|..++.+.++.+|..|..+|..+.+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 223333335689999999999999999999999988754
No 144
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.00 E-value=0.0013 Score=57.96 Aligned_cols=213 Identities=14% Similarity=0.155 Sum_probs=150.4
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhH
Q 008835 307 AGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKV 384 (551)
Q Consensus 307 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~ 384 (551)
..++..++.+|.++-..+|.+|+.++.+++.. ++.... .+..|+.+++.+ ...+....+.+++.++....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence 35788999999998899999999999999864 333332 345666676544 56666677788887764321
Q ss_pred HhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh
Q 008835 385 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG 464 (551)
Q Consensus 385 ~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~ 464 (551)
.+. .+++|.+..-..-|+++.+.....+|..+....+.- -.+++.-+..++++++..=+-.|+..+..+..+ +
T Consensus 103 e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~ 175 (253)
T 2db0_A 103 ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--S 175 (253)
T ss_dssp HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--T
T ss_pred HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--C
Confidence 121 246777777778899999999999999987644322 234567788899887765555566555555443 1
Q ss_pred HHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 465 KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 465 ~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
-..+. -.+|.|..+|.+++.-+|..|+.+|.+++..+++.+.. +..-++=+.+.++-++.+....|..+.
T Consensus 176 ~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 FKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22222 47899999999999999999999999999999875553 333344455667777777777776654
No 145
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.98 E-value=0.00046 Score=77.62 Aligned_cols=266 Identities=15% Similarity=0.183 Sum_probs=189.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh---hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC-CC
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA---DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DS 340 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~ 340 (551)
.+.+..|...+...... +.|+..+..++.... ..-..++ +.+|.++..+.+....++..|-.++..+... +.
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~ 128 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH
Confidence 36777777777654333 788888999985432 1223333 6899999999999999999888888777542 22
Q ss_pred chHHHhhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhHHhhhh--CcHHHHHHHhccCChhHHHHHHHHHHHh
Q 008835 341 NKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNL 417 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--~~i~~Lv~lL~~~~~~~~~~a~~aL~nL 417 (551)
.. + ...+|.|+..|.+. .+..+..|+.++..|+... ..+++.. ..||.+.+.+.+..+++++.|..++..+
T Consensus 129 ~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 129 VA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 11 1 34688999999866 6999999999999998644 3455443 8899999999998999999999999998
Q ss_pred ccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 008835 418 SIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 497 (551)
Q Consensus 418 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~ 497 (551)
|..-+|+.. ...||.|++.+.+++. +..++..|..-....+...-... =.+|.|.+-|...+..++..++-++-
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEc
Confidence 875554421 3568999999987633 55666555544332221111110 14677777777778888899999999
Q ss_pred HHhc--CCHHHHHHHHHcCcHHHHHHHhhh-CChHHHHHHHHHHHHHHhHHHh
Q 008835 498 AICT--GDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQRIDMA 547 (551)
Q Consensus 498 ~L~~--~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~l~~~~~~ 547 (551)
|||. .+|.....++- ..+|.|...... .+|++|+.|..++..|.+....
T Consensus 277 n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 9998 55665555443 477777777655 4899999999999999876543
No 146
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.94 E-value=0.00032 Score=68.44 Aligned_cols=183 Identities=11% Similarity=0.079 Sum_probs=138.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-hcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHH-
Q 008835 352 PDIVDVLKNGSMEARENAAATLFS-LSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR- 429 (551)
Q Consensus 352 ~~Lv~~L~~~~~~~~~~aa~~L~~-Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~- 429 (551)
..+++.|.+++.+.+..++.-|.. ++.+.+....+...+++..|+.....++...+..+++||.+|-.+..+...+++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 345566777777778878888877 666778888999999999999999999999999999999999988777766664
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChh-hHHHhhh--------C--CCHHHHHHHHh---cCCHHHHHHHHHH
Q 008835 430 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQE-GKTAIGQ--------A--EPIPVLMEVIR---TGSPRNRENAAAV 495 (551)
Q Consensus 430 ~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~-~~~~i~~--------~--~~v~~L~~lL~---~~~~~~k~~A~~~ 495 (551)
...|..+..++.+.+..+...|+.+|..++.+.+ +...+.+ . .....|+.+|+ +++.+++.+|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 4689999999998888999999999999988643 3322221 1 24889999997 6778999999887
Q ss_pred HHHHhcCCH------HHHHHHHHcCcHHHHHHHhhhC--ChHHHHHH
Q 008835 496 LWAICTGDA------EQLKIARELDAEEALKELSESG--TDRAKRKA 534 (551)
Q Consensus 496 L~~L~~~~~------~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A 534 (551)
|-.+..+-+ +....+.+.|+-..+...+... +++.++.-
T Consensus 281 IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 281 INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 766544322 2334455667767777766654 45666553
No 147
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.92 E-value=0.00015 Score=72.46 Aligned_cols=245 Identities=9% Similarity=-0.007 Sum_probs=153.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 346 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 346 (551)
.....+..+.+.+...++-..-.+..+++..++.- =++..|.+=++++++-++-.|+++|+++...+-
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m------ 136 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM------ 136 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH------
Confidence 34556678889999888888888888887533321 246788889999999999999999999964331
Q ss_pred hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHH
Q 008835 347 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 426 (551)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 426 (551)
-....+.+-+.|.+.++.++..|+-+...|..... ..+ .+++..+-+++.+.++.++..|+.+|+.+...+..
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 11234567777778899999999999998865442 222 36899999999999999999999999999875421
Q ss_pred HHHcCChHHHHHhhccC---ChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 427 AVRAGIVPPLMRFLKDA---GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 427 l~~~g~i~~Lv~lL~~~---~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
.+..|+..+... ++..+-..+.++..++...+ .-.....++.+..+|++.++.+.-.|+.++..+...+
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 344455555442 23323333333323322210 0112346677777788888999999999998886533
Q ss_pred HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 504 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 504 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
... . ..++..|..++.+.++.+|--|...|..+..
T Consensus 282 ~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 282 AKE----L-APAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred HHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 221 1 2345667777888888888888776666544
No 148
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.84 E-value=0.00024 Score=69.41 Aligned_cols=148 Identities=11% Similarity=0.030 Sum_probs=121.2
Q ss_pred HHHHHhccCChhHHHHHHHHHHH-hccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhC-
Q 008835 394 ALIRLLCDGTPRGKKDAATAIFN-LSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA- 471 (551)
Q Consensus 394 ~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~- 471 (551)
.+++-|.+++.+.++.++.-|.. +..+.+-...++..+++..|+.+....+..++.+++.+|.+|-.+..|-..++.+
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34455567778888899999998 5667778888999999999999999999999999999999999999999888754
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--------cC--cHHHHHHHhh---hCChHHHHHHHHHH
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE--------LD--AEEALKELSE---SGTDRAKRKAGSIL 538 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~--------~g--~i~~L~~ll~---~~~~~~k~~A~~lL 538 (551)
..|..+..++.+....+-..|.++|..++..++.....+.+ .| ..+.|+.+++ +++.+++.+|..++
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 68999999999877889999999999999877533333322 12 3778888987 67899999998887
Q ss_pred HHH
Q 008835 539 ELL 541 (551)
Q Consensus 539 ~~l 541 (551)
.-+
T Consensus 282 N~l 284 (339)
T 3dad_A 282 NKT 284 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 149
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.83 E-value=0.0002 Score=73.46 Aligned_cols=230 Identities=15% Similarity=0.143 Sum_probs=154.5
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHhcC--CHHHHHHhhcC---------------C--CHHHHHHHH
Q 008835 270 ALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAG--AIPLLVELLSS---------------T--DPRTQEHAV 329 (551)
Q Consensus 270 ~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~a~ 329 (551)
.++..|.+. +.+.+.-++.+|..|.. .+++|..+.+.+ .+|+++.+++. + ...++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 344555553 45667778999999986 778898887653 47777665441 1 356789999
Q ss_pred HHHHhcccCCCchHHHhhcCCc--HHHHHHHhcC-CHHHHHHHHHHHHHhcCCcc--hh---H-HhhhhCcHHHHHHHhc
Q 008835 330 TALLNLSINDSNKGTIVNAGAI--PDIVDVLKNG-SMEARENAAATLFSLSVIDE--NK---V-AIGAAGAIPALIRLLC 400 (551)
Q Consensus 330 ~~L~nLs~~~~~~~~i~~~g~i--~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~--~~---~-~i~~~~~i~~Lv~lL~ 400 (551)
-+++-|+.+++....+...+.. +.|+.+++.. .+.+..-+.++|.||..... .. . .+...++ +.+++.|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999988766666666543 5677778765 58888999999999987651 11 2 2222344 55666665
Q ss_pred c---CChhHHHHHHHH-------HHHhccCC---------------ChHH---------HHHHc--CChHHHHHhhcc--
Q 008835 401 D---GTPRGKKDAATA-------IFNLSIYQ---------------GNKA---------RAVRA--GIVPPLMRFLKD-- 442 (551)
Q Consensus 401 ~---~~~~~~~~a~~a-------L~nL~~~~---------------~~~~---------~l~~~--g~i~~Lv~lL~~-- 442 (551)
. .|+++..+.-.. +..+++.+ ..+. ++-+. .++..|+++|.+
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 4 345444432221 11222111 1111 12222 257889999973
Q ss_pred --------CChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 443 --------AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 443 --------~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
.++.+..-|+.=++.++. +|.||..+-+.|+=..+++++.+.++++|.+|..++..+..
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 256666777777888888 69999988888999999999999999999999988877653
No 150
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.81 E-value=0.00022 Score=71.37 Aligned_cols=264 Identities=11% Similarity=0.051 Sum_probs=148.2
Q ss_pred ccchhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH
Q 008835 224 TPNYVLKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVC 303 (551)
Q Consensus 224 ~~n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~ 303 (551)
.+|..+++++=.+....... |.- . --.+..|...++++++-.+-.|++.|..+.. ++.-.
T Consensus 79 s~d~~lKrLvYLyl~~~~~~-~~e---------------~-iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~- 138 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCI-AED---------------V-IIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ- 138 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-SSC---------------G-GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH-
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHH---------------H-HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH-
Confidence 57788888876665543322 100 0 1568889999999999999999999999974 22222
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh
Q 008835 304 IAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 383 (551)
Q Consensus 304 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~ 383 (551)
...+.+.+.|.+.++-++..|+-+...|.... .+.+ .++++.+-+++.+.++-+..+|..+|..+...+.
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-- 208 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-- 208 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--
Confidence 24567888899999999999999998886432 3332 3689999999999999999999999999976542
Q ss_pred HHhhhhCcHHHHHHHhccC---ChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 008835 384 VAIGAAGAIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 460 (551)
Q Consensus 384 ~~i~~~~~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~ 460 (551)
.++..|+.-+..+ ++-.+..-++.+..++..++ .-.....++.+.++|++.++.++-.|+.++..+..
T Consensus 209 ------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 209 ------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 1445556555543 23333334444434433221 01234566777788888889999999999988866
Q ss_pred ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHH
Q 008835 461 HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAG 535 (551)
Q Consensus 461 ~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~ 535 (551)
.+.. +. ..++..|..+|.+.++.+|-.|+..|..+....|...+. .-.-+..++.+++.-+...|.
T Consensus 280 ~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 280 CSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred CCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHH
Confidence 3322 11 245677777888888999999999999998877654432 233445555555554444443
No 151
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.74 E-value=0.0025 Score=70.99 Aligned_cols=234 Identities=17% Similarity=0.142 Sum_probs=157.9
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 008835 267 AIDALLGKLANGN--------VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN 338 (551)
Q Consensus 267 ~i~~Lv~~L~s~~--------~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 338 (551)
.+..|...|.+.+ +.++..|+..|....-++. +..+++.|..+|.+++..+++.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4555666665443 4456666666666543221 112467888889888877777888888876443
Q ss_pred CCchHHHhhcCCcHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc-CChhHHHHHHHHHHH
Q 008835 339 DSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFN 416 (551)
Q Consensus 339 ~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~n 416 (551)
..+.. ++..|+..+. ..+..++..++-.|..+.... ...++.+++.|.. .++-++..++.++.-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33322 3466666654 446788888888888765432 3467888888875 566777777777765
Q ss_pred hccCCChHHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHH-hcCCHHHHHHHHH
Q 008835 417 LSIYQGNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI-RTGSPRNRENAAA 494 (551)
Q Consensus 417 L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL-~~~~~~~k~~A~~ 494 (551)
-....+|. .+|+.|++.+. +.+..++..|+..|+.+..... ..++.++.+| +++++.+|..|+.
T Consensus 569 AyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55544443 23555666654 4677888888888888765432 4577777755 4678999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 495 VLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 495 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
+|..+|.+++. ..++..|..++.+.+..+++.|..+|.++.
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 99999987642 125677777888888888888888887764
No 152
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.61 E-value=0.032 Score=49.29 Aligned_cols=215 Identities=15% Similarity=0.177 Sum_probs=150.5
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccCCCch
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNK 342 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~ 342 (551)
+...+..+++.|...-|-+|..|+..|..+++..++...-+. ..|+-+++. ....+-.....+++.++...+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 557889999999988899999999999999998877655443 456666544 444554555677777764211
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 422 (551)
.++ .+.+|.+..=.+-|++.++.+...+|..+..... ..+ .+++.-+..++.+.+..-+..|+..+..+ .+
T Consensus 103 -e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~--~~v~rdi~smltskd~~Dkl~aLnFi~al---Ge 173 (253)
T 2db0_A 103 -ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLM--ASIVRDFMSMLSSKNREDKLTALNFIEAM---GE 173 (253)
T ss_dssp -HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTC---CT
T ss_pred -HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHH---hc
Confidence 111 2345666666677899999999999998865432 111 25678888899887765565555555544 44
Q ss_pred hHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 008835 423 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 501 (551)
Q Consensus 423 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~-~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~ 501 (551)
|..+-+ ...+|.|..+|.+.+.-++..|+.+|.+++. ++.-|..+. .-++-+.+.|..++......|..+.-
T Consensus 174 n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 174 NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 554433 3578999999999999999999999999999 455554433 34555666777777777777766553
No 153
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=5.6e-05 Score=56.98 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=38.4
Q ss_pred CcccccccccCcCCee-ccCcccccHHHHHHHHHhC-CCCCCCCcccccC
Q 008835 173 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAG-HKTCPKTQQTLLH 220 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~~-~~~CP~c~~~l~~ 220 (551)
...|+||.+.+..-.. ..|||.|...||.+||+.. ..+||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3579999998864332 3899999999999999853 3789999987653
No 154
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.52 E-value=9.3e-05 Score=53.51 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=39.9
Q ss_pred CCcccccccccCcCCeeccCcc-----cccHHHHHHHHHh-CCCCCCCCccccc
Q 008835 172 DDFRCPISLELMKDPVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKTQQTLL 219 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh-----~~~~~ci~~~~~~-~~~~CP~c~~~l~ 219 (551)
+.-.|.||++-..+|.+.||.. .|.+.|+++|+.. ++.+||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4557999998888888888653 7999999999985 6789999998775
No 155
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.42 E-value=6.3e-05 Score=59.01 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=38.5
Q ss_pred ccccccccCcC-CeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 175 RCPISLELMKD-PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 175 ~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
.|+.|.-.+.. ..++||+|.||..|+..|...+..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 48888765543 34689999999999999999889999999988764
No 156
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.21 E-value=0.0048 Score=69.48 Aligned_cols=259 Identities=15% Similarity=0.137 Sum_probs=172.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCc---h
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN---K 342 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~---~ 342 (551)
..+..++..++..+......++..|..+........ ....+++..|.+.+.+.... +.|+.++..|+..... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 345567777776555667788888888775332111 11136778888888775444 9999999999864322 2
Q ss_pred HHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhHHhhhhCcHHHHHHHhccC-ChhHHHHHHHHHHHhccC
Q 008835 343 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~ 420 (551)
+.+ --+.++.++..+.+....++..|..++..+... +... + ..++|.|+..|.+. ....+..|+.+|..|+..
T Consensus 90 e~~-~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 90 EPY-IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred ccc-hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 222 225678888887777778887777666555322 1111 1 45789999998765 578999999999999875
Q ss_pred CChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
........-..+||.+.+.+-+..+++...|..++..+|..-++++. ...+|.|++.+..++. -..++..|..-+
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~t 239 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATT 239 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence 53333333357899999999999999999999999999985443321 2578999999986642 334454444433
Q ss_pred cCC---HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 501 TGD---AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 501 ~~~---~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
.-. ..... =.+|.|..-+...+...+++++-++.+|++
T Consensus 240 fv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 240 FVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp CCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred eEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 321 11111 035555566666788899999999999976
No 157
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.19 E-value=0.083 Score=58.96 Aligned_cols=241 Identities=16% Similarity=0.100 Sum_probs=155.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHhcccCCCchH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDSNKG 343 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~ 343 (551)
...+..|...|.+.+......|+..|..+--+.. +. .++..|+..+ ...+..+++.++.+|+.+...
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g----- 538 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG----- 538 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence 4567778888877766555667777776533211 11 2345555544 345778999999999877543
Q ss_pred HHhhcCCcHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhc-cCChhHHHHHHHHHHHhccCC
Q 008835 344 TIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~ 421 (551)
....++.+++.|.. .++-+|..++.++.--.....+ ..+|..|++.+. +.+..++..|+.+|..+....
T Consensus 539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 23467888888875 4677777776666532222122 235676776654 456788999999999887665
Q ss_pred ChHHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 422 GNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 422 ~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
+ ..++.++.+|. +.++.++..|..+|+.++...... .++..|..++.+.++.++..|+.+|..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3 34677777664 578899999999999998753322 24667777888888999999999999988
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhh--CChHHHHHHHHHHHHH
Q 008835 501 TGDAEQLKIARELDAEEALKELSES--GTDRAKRKAGSILELL 541 (551)
Q Consensus 501 ~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~k~~A~~lL~~l 541 (551)
.+....... .-.+....|..+..+ .++.++-.|.-+..++
T Consensus 676 ~gtnna~~~-rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 676 IQQTEKLNP-QVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TTCCTTTCT-THHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred cCCccccch-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 765322000 001234445666653 3566666666555554
No 158
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0094 Score=57.55 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=125.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChhhH--HHHH-hc-CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCC----Cch
Q 008835 271 LLGKLANGNVEEQRAAAGELRLLAKRNADNR--VCIA-EA-GAIPLLVELLSSTDPRTQEHAVTALLNLSIND----SNK 342 (551)
Q Consensus 271 Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r--~~i~-~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~----~~~ 342 (551)
|-+.|.|.+|..+.+|+..|..+....+... .... .. ..++.+-+.+.+.|..++..++.++..++..- ..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5688999999999999999988775433211 1111 12 35667778888999999999999998876421 111
Q ss_pred H--HHhhcCCcHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 008835 343 G--TIVNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 419 (551)
Q Consensus 343 ~--~i~~~g~i~~Lv~~-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 419 (551)
. ...-..+++.|++- |.++...++..+..++..+........ .++..++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 22234567777765 677778888888888876653322111 235667777888899999999998888754
Q ss_pred C--CCh-HHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 420 Y--QGN-KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 420 ~--~~~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
. ... .....-..+++.+..+|.+.++.++..|..++..+...
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 2 111 11111123566678888999999999999999988775
No 159
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.02 E-value=0.00012 Score=71.10 Aligned_cols=49 Identities=20% Similarity=0.554 Sum_probs=38.5
Q ss_pred CCcccccccccCcC----Cee----ccCcccccHHHHHHHHHhCC----------CCCCCCcccccC
Q 008835 172 DDFRCPISLELMKD----PVI----VSTGQTYERSCIQKWLDAGH----------KTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~~~~~~----Pv~----~~cgh~~~~~ci~~~~~~~~----------~~CP~c~~~l~~ 220 (551)
....|+||...+.+ |.. ..|||.|...|+.+|+.... .+||.|+++++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 44579999998876 432 47999999999999998521 469999998753
No 160
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.01 E-value=0.0024 Score=65.93 Aligned_cols=242 Identities=11% Similarity=0.068 Sum_probs=157.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhc--CCHHHHHHhhcC-------C---CHHHHHHHHHHHHh
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA--GAIPLLVELLSS-------T---DPRTQEHAVTALLN 334 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~-------~---~~~~~~~a~~~L~n 334 (551)
....|+..|-++.|+++.-|+-.|+.+.+............ ...-.|+.+|.- + -..+|+.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 67889999999999999999999999887543110000111 222233333311 1 24689999999998
Q ss_pred cccCCCchHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh-hhCcHHHHHHHhccCChhHHHHHHHH
Q 008835 335 LSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG-AAGAIPALIRLLCDGTPRGKKDAATA 413 (551)
Q Consensus 335 Ls~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~~~i~~Lv~lL~~~~~~~~~~a~~a 413 (551)
+ .+-+.. ..++..++..+..+.++++..++-.|.++ . ..+. -.++++.++..|.+.+++++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL--~----DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL--K----EFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT--G----GGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH--H----HHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 642221 23344444444777899999999999998 1 1111 24678888899999999999999999
Q ss_pred HHHhccCCChHHHHHHcCChHHHHHhhccC-C-hhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHH
Q 008835 414 IFNLSIYQGNKARAVRAGIVPPLMRFLKDA-G-GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNREN 491 (551)
Q Consensus 414 L~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~-~-~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~ 491 (551)
|.-++ .++... .++..+-+.|.+- + ..-....+..|+.|+..+.. .-.....||.|..++++.-..+|..
T Consensus 323 LiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99998 222211 1233344444432 1 22345567888888887642 1122368999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHH-HHhhhCChHHHHHHHHHHH
Q 008835 492 AAAVLWAICTGDAEQLKIARELDAEEALK-ELSESGTDRAKRKAGSILE 539 (551)
Q Consensus 492 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~k~~A~~lL~ 539 (551)
++.+|..+. .. .++..+. .++-..++++++.+..+-+
T Consensus 395 VL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998776 21 2333333 3556667777777776654
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.66 E-value=0.11 Score=48.37 Aligned_cols=227 Identities=15% Similarity=0.139 Sum_probs=150.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh-cCCHHHHHHhh-------cCCC-----HHHHHHHHHHHH
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELL-------SSTD-----PRTQEHAVTALL 333 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL-------~~~~-----~~~~~~a~~~L~ 333 (551)
.+..++..|.+ ++.++.|+.+|..--...++-...+=. .|.+..|++=+ +.+. ..-.-+|+..|-
T Consensus 4 ~i~qli~~L~~--p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSS--PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSS--TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 45556666654 345777776665533222222222222 36666664322 2211 223356666677
Q ss_pred hcccCCCchHHHhhcCCcHHHHHHHhcCC-----HHHHHHHHHHHHHhcCCcc--hhHHhhhhCcHHHHHHHhccCChhH
Q 008835 334 NLSINDSNKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRLLCDGTPRG 406 (551)
Q Consensus 334 nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~lL~~~~~~~ 406 (551)
-++.+++.|..+.++...--|.-+|...+ +-+|-.++.+++.|...++ ....+...+++|..++.+..|++-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 78889999999999887777777777553 4578899999999986553 4455567799999999999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHH--------cCChHHHHHhh-ccCChhhHHHHHHHHHHHhcChhhHHHhhh-------
Q 008835 407 KKDAATAIFNLSIYQGNKARAVR--------AGIVPPLMRFL-KDAGGGMVDEALAILAILASHQEGKTAIGQ------- 470 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~--------~g~i~~Lv~lL-~~~~~~~~~~al~~L~nL~~~~~~~~~i~~------- 470 (551)
+.-|.-++..+-.++.+...+.. ..++..++.-+ .++++.+..+.+.+-..|+.++.++.++..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999988777665443321 12333344433 458889999999999999999999988764
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008835 471 AEPIPVLMEVIRTGSPRNRENAAAVLWAI 499 (551)
Q Consensus 471 ~~~v~~L~~lL~~~~~~~k~~A~~~L~~L 499 (551)
.|.+..+ + .+++.++..-...+.|+
T Consensus 242 d~tf~~~---l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQV---L-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHHH---H-TSCHHHHHHHHHHHHHS
T ss_pred ChHHHHH---H-hcCHHHHHHHHHHHHhc
Confidence 2333332 3 25677777776666665
No 162
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.58 E-value=0.063 Score=61.34 Aligned_cols=252 Identities=13% Similarity=0.108 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHhcccCCCchHHHhhc-----CC
Q 008835 282 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS------STDPRTQEHAVTALLNLSINDSNKGTIVNA-----GA 350 (551)
Q Consensus 282 ~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-----g~ 350 (551)
.+..|...|..++.... ..+. .-.++.+...+. +.+...++.|+.+++.++..-.....-... ..
T Consensus 377 ~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp HHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 45566667777776433 1111 112344444454 567788999999999997532111100000 11
Q ss_pred cH----HHHHHHhcC---CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC-
Q 008835 351 IP----DIVDVLKNG---SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG- 422 (551)
Q Consensus 351 i~----~Lv~~L~~~---~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~- 422 (551)
.+ .++..|.++ .+-+|..|+|++..++..- .... -..+++.++..|.+.+..++..|+.||.+++...+
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 12 233345555 7899999999999998642 1111 23578888888888889999999999999987421
Q ss_pred --------hHHHHHH--cCChHHHHHhhccCC---h--hhHHHHHHHHHHHhcCh--hhHHHhhhCCCHHHHHHHHh---
Q 008835 423 --------NKARAVR--AGIVPPLMRFLKDAG---G--GMVDEALAILAILASHQ--EGKTAIGQAEPIPVLMEVIR--- 482 (551)
Q Consensus 423 --------~~~~l~~--~g~i~~Lv~lL~~~~---~--~~~~~al~~L~nL~~~~--~~~~~i~~~~~v~~L~~lL~--- 482 (551)
.+..+.. ..++..|+.++.... . ...+.++.+|..++..- +.... .. ..++.|...+.
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~-~~-~l~~~L~~~l~~~~ 607 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL-FP-QLLAQFIEIVTIMA 607 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG-HH-HHHHHHHHHHHHHT
T ss_pred cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhH-HH-HHHHHHHHHHHHHH
Confidence 1222221 234556666665531 1 12345566665554421 11111 10 23344444443
Q ss_pred -cC-CHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 483 -TG-SPRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 483 -~~-~~~~k~~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
++ ++..+..++.+|..++.. +++.... ....+++.+..++..........+..++..+.+
T Consensus 608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 608 KNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 22 356677788888888775 3333322 334467888888877655566666666665544
No 163
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.51 E-value=0.074 Score=49.61 Aligned_cols=143 Identities=22% Similarity=0.194 Sum_probs=105.8
Q ss_pred ChhHHHHHHHHHHHhccCCChHHHHH--HcCChHHHHHhhccCC------------hhhHHHHHHHHHHHhcChhhHHHh
Q 008835 403 TPRGKKDAATAIFNLSIYQGNKARAV--RAGIVPPLMRFLKDAG------------GGMVDEALAILAILASHQEGKTAI 468 (551)
Q Consensus 403 ~~~~~~~a~~aL~nL~~~~~~~~~l~--~~g~i~~Lv~lL~~~~------------~~~~~~al~~L~nL~~~~~~~~~i 468 (551)
+++.++.|+.-|+.=-..-++-+-++ .-|.+..|++=+-+.. ..-+..|++.|..++++++.|..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 34556666655554322223333333 2477777765443311 123578899999999999999999
Q ss_pred hhCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 469 GQAEPIPVLMEVIRTGS-----PRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 469 ~~~~~v~~L~~lL~~~~-----~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
++++..--|..+|...+ ...|-.+.+++..|...+ ++....+.+..++|..+.+++.|++-.|.-|.-+++.+-
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 99998888888998755 357888999999988754 677888899999999999999999999999999998775
Q ss_pred hHH
Q 008835 543 RID 545 (551)
Q Consensus 543 ~~~ 545 (551)
..|
T Consensus 174 ~dd 176 (268)
T 2fv2_A 174 LDD 176 (268)
T ss_dssp HSH
T ss_pred ccc
Confidence 433
No 164
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.46 E-value=0.06 Score=51.22 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=123.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcC-CHHHHHHhhcCCCHHHHHHHHHHHHhccc---CCCchHHH
Q 008835 270 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAG-AIPLLVELLSSTDPRTQEHAVTALLNLSI---NDSNKGTI 345 (551)
Q Consensus 270 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g-~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~---~~~~~~~i 345 (551)
.+...|-+.++..+.+|+..|......++. ..+...+ .++.+.--+.+.|..+...++.+|..+.. +.+.+-.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 455666677898899999998887654442 2222222 22322223346788888888888877632 11111111
Q ss_pred h-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChH
Q 008835 346 V-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 424 (551)
Q Consensus 346 ~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 424 (551)
. ..-++|.|++-+.++...+|..+-.++..+... .....+++.+++-+++.+.+.+..++..+..+-...+..
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 1 133689999999888888998888877666421 122357788888889999999999999888875433222
Q ss_pred HHHHHcCCh---HHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 425 ARAVRAGIV---PPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 425 ~~l~~~g~i---~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
...++ +.+..++.+.+..++..|+.++..+..+
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 24578 9999999999999999999999877664
No 165
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.02 E-value=0.25 Score=56.30 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHH----hcCCHH----HHHHhhcCC---CHHHHHHHHHHHHhcccCCCchHHH
Q 008835 277 NGNVEEQRAAAGELRLLAKRNADNRVCIA----EAGAIP----LLVELLSST---DPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 277 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~----~~g~i~----~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
+.+|..+..|+..+..++.........+. .....+ .++..|.++ ++-+|..|+++++.++..- ... .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-Q 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-H
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-H
Confidence 56788889999999999753210000000 001222 233345665 8999999999999998642 111 1
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc---------hhHHhhhh--CcHHHHHHHhccCC---hh--HHHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE---------NKVAIGAA--GAIPALIRLLCDGT---PR--GKKD 409 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~---------~~~~i~~~--~~i~~Lv~lL~~~~---~~--~~~~ 409 (551)
-..+++.++..|.+.+..++..|+++|.+++...+ .+..+... ..++.|+.++.... .+ ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23467788888888889999999999999987421 23333322 56666667776641 11 2345
Q ss_pred HHHHHHHhccC--CChHHHHHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcC--hhhHHHhhhCCCHHHHHHH
Q 008835 410 AATAIFNLSIY--QGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASH--QEGKTAIGQAEPIPVLMEV 480 (551)
Q Consensus 410 a~~aL~nL~~~--~~~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~al~~L~nL~~~--~~~~~~i~~~~~v~~L~~l 480 (551)
++.+|..++.. .+... .. ..+++.|...+.. .+......++.+|..++.. ++.... .....+|.+..+
T Consensus 573 l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~i 649 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHH
Confidence 55566555331 11111 11 1234445554432 2445666678888877764 222222 233467888888
Q ss_pred HhcCCHHHHHHHHHHHHHHh
Q 008835 481 IRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 481 L~~~~~~~k~~A~~~L~~L~ 500 (551)
|........+.+..++..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 87655556666666665554
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.059 Score=51.83 Aligned_cols=187 Identities=12% Similarity=0.122 Sum_probs=121.5
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc---hhHHhh--hhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCC---
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDE---NKVAIG--AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG--- 422 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~---~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~--- 422 (551)
+| |-+-|.+.++..|..|...|..+..... ...... -....+.+-..+.+.+..++..++.+|..++..-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 6678889999999999988876543211 111111 12455666678888899999999999988865322
Q ss_pred -hHH--HHHHcCChHHHHHh-hccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008835 423 -NKA--RAVRAGIVPPLMRF-LKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 498 (551)
Q Consensus 423 -~~~--~l~~~g~i~~Lv~l-L~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~ 498 (551)
.+. ...-..+++.|++- |.+....++..|+.++..++........ ++..++..+.+.+|.++..++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 111 22234567777764 7777888889998888777653322111 23455566778899999999888887
Q ss_pred HhcC-CHHH--HHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHhH
Q 008835 499 ICTG-DAEQ--LKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 544 (551)
Q Consensus 499 L~~~-~~~~--~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 544 (551)
+... +... ....+ ..+++.+..++.+.++.+|..|..++-.+-++
T Consensus 166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 6532 1111 01111 12455677788999999999999988777553
No 167
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.83 E-value=0.15 Score=49.64 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=146.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH----HHHhc-CCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCC
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRV----CIAEA-GAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~----~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 340 (551)
+.+..|+..|..-+.+.+..+.....++.+.....+. .+... ..+..|+.-- +++++--.+-..|.....++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhHH
Confidence 5788899999999999999999999988876554332 22221 2222222222 245555566666777777777
Q ss_pred chHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chhHHhhhh---CcHHHHHHHhccCChhHHHHHHHHHHH
Q 008835 341 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAA---GAIPALIRLLCDGTPRGKKDAATAIFN 416 (551)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~---~~i~~Lv~lL~~~~~~~~~~a~~aL~n 416 (551)
....+...+.+..+.+....++-++...|..++..|-... ......... .++...-.+|.+++.-++..++..|..
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge 235 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 7777777778889999999999999999999988774332 222222222 567777889999999999999999999
Q ss_pred hccCCChHHHHHH----cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh
Q 008835 417 LSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG 464 (551)
Q Consensus 417 L~~~~~~~~~l~~----~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~ 464 (551)
|..+..|...|.. ..-+..++.+|++.+..++..|..++.-...+|..
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 9999888776553 45688899999999999999999999988887643
No 168
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.38 E-value=0.0061 Score=49.05 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.6
Q ss_pred CCccccccccc-CcCCee--ccCcccccHHHHHHHH
Q 008835 172 DDFRCPISLEL-MKDPVI--VSTGQTYERSCIQKWL 204 (551)
Q Consensus 172 ~~~~Cpic~~~-~~~Pv~--~~cgh~~~~~ci~~~~ 204 (551)
++..|++|.+. ..+||. +.|||+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46789999964 789998 8999999999999844
No 169
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.17 E-value=0.37 Score=46.79 Aligned_cols=136 Identities=10% Similarity=0.125 Sum_probs=93.9
Q ss_pred ChhHHHHHHHHHHHhccCCChHHHHHHc--CChHHHHHhhccCChhhHHHHHHHHHHHhcChh---hHHHhhhCCCHHHH
Q 008835 403 TPRGKKDAATAIFNLSIYQGNKARAVRA--GIVPPLMRFLKDAGGGMVDEALAILAILASHQE---GKTAIGQAEPIPVL 477 (551)
Q Consensus 403 ~~~~~~~a~~aL~nL~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~---~~~~i~~~~~v~~L 477 (551)
.+..+..++++++|+..++..+..+... .+++.+...+.+.+..++..+..++.|++.... ..+.. ..++..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHH
Confidence 4556888999999999998888877653 345555555555677888888889999987311 11111 1134455
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhh-CChHHHHHHHHHHHH
Q 008835 478 MEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSILEL 540 (551)
Q Consensus 478 ~~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~ 540 (551)
..+++. .+.+..-.+..+|.+|...+++....+...|+-..+-.+... ..+++.+.+..+|..
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 555554 457788888889999998887777777777877776666655 467777777777654
No 170
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.69 E-value=0.015 Score=54.83 Aligned_cols=67 Identities=19% Similarity=0.083 Sum_probs=41.2
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 008835 436 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDA 515 (551)
Q Consensus 436 Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~ 515 (551)
|..++.+++..++..++..+ ..+.|..++.+.+..+|..++..+.
T Consensus 175 l~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------ 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS------------------ 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC------------------
T ss_pred HHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC------------------
Confidence 33455556666665555431 2355666677777888877776541
Q ss_pred HHHHHHHhhhCChHHHHHHHHHH
Q 008835 516 EEALKELSESGTDRAKRKAGSIL 538 (551)
Q Consensus 516 i~~L~~ll~~~~~~~k~~A~~lL 538 (551)
.+.|..| .+.+..++..|...|
T Consensus 220 ~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHc-cCCCHHHHHHHHHHh
Confidence 3455556 777888888776543
No 171
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.69 E-value=2.6 Score=47.80 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHh---c--cCChhHHHHHHHHHHHhccCCChHHHHHHcCChHH
Q 008835 361 GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL---C--DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPP 435 (551)
Q Consensus 361 ~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL---~--~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~ 435 (551)
.++..++.++.++..++..-.... ...++.++.++ . +.++.++..++++|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 467788999999999876532111 13444444433 3 2478899999999998875322111111 134556
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhh--CCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCC-HHHHHHH
Q 008835 436 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGD-AEQLKIA 510 (551)
Q Consensus 436 Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~--~~~v~~L~~lL~~~--~~~~k~~A~~~L~~L~~~~-~~~~~~~ 510 (551)
|+..| + +.+...|+.++.+++.. .+..+.. ...+..+..++..+ +...+..+..++..+...- ++.....
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666 3 67899999999999953 3333432 24566666777763 4778888888888887542 1222211
Q ss_pred HHc---CcHHHHHHHhhhC--ChHHHHHHHHHHHHHHh
Q 008835 511 REL---DAEEALKELSESG--TDRAKRKAGSILELLQR 543 (551)
Q Consensus 511 ~~~---g~i~~L~~ll~~~--~~~~k~~A~~lL~~l~~ 543 (551)
... -++..+..++... ++..+......|..|..
T Consensus 626 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 626 LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 111 1333333444443 44455666666666654
No 172
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.60 E-value=0.024 Score=53.11 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=38.7
Q ss_pred CcccccccccCcCCee-ccCcccccHHHHHHHHHh-CCCCCCCCcccccCC
Q 008835 173 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDA-GHKTCPKTQQTLLHT 221 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~-~~cgh~~~~~ci~~~~~~-~~~~CP~c~~~l~~~ 221 (551)
-..|.+|.++...-+. -.|++.|...|+.+|++. +...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4569999998875443 249999999999999975 356899999876644
No 173
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.03 Score=55.31 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCcccccccccCcCCee-ccCccc--ccHHHHHHHHH-hCCCCCCCCcccccCCCCccchhhHHHHHH
Q 008835 172 DDFRCPISLELMKDPVI-VSTGQT--YERSCIQKWLD-AGHKTCPKTQQTLLHTALTPNYVLKSLIAL 235 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~-~~cgh~--~~~~ci~~~~~-~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~ 235 (551)
-.+.||++...|..|+- ..|.|. |+...+..... .+...||.|.+.+...++..+..+...+..
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 45899999999999996 689998 66665555443 367899999999999889888877776654
No 174
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.28 E-value=3.8 Score=46.52 Aligned_cols=212 Identities=15% Similarity=0.038 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcHHHHHHH---h--cCCHHHHHHHHHHHHHhcCCcc-hhHHhhhhCcHH
Q 008835 320 TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL---K--NGSMEARENAAATLFSLSVIDE-NKVAIGAAGAIP 393 (551)
Q Consensus 320 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L---~--~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~~~i~ 393 (551)
.+...++.|+.+++.++..-.... ...++.++.++ . +..+.++..+++++..++..-. +...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 567789999999999986422111 13344455444 2 2478899999999998874321 11111 24667
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHH--cCChHHHHHhhcc--CChhhHHHHHHHHHHHhcC-h-hhHHH
Q 008835 394 ALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR--AGIVPPLMRFLKD--AGGGMVDEALAILAILASH-Q-EGKTA 467 (551)
Q Consensus 394 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~--~g~i~~Lv~lL~~--~~~~~~~~al~~L~nL~~~-~-~~~~~ 467 (551)
.|+..| + +.++..|+.++.+++..- +..+.. .+++..|..++.. .+...+..++.++..++.. + +....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 777777 3 678999999999999543 222321 3556666677765 3456777788888877653 2 32222
Q ss_pred hhhCCCHHHHHHHH----hcC--CHHHHHHHHHHHHHHhcC-----CH-----------HHHHHHHHcCcHHHHHHHhhh
Q 008835 468 IGQAEPIPVLMEVI----RTG--SPRNRENAAAVLWAICTG-----DA-----------EQLKIARELDAEEALKELSES 525 (551)
Q Consensus 468 i~~~~~v~~L~~lL----~~~--~~~~k~~A~~~L~~L~~~-----~~-----------~~~~~~~~~g~i~~L~~ll~~ 525 (551)
... ..++.++..+ ... ++..+...+..|..|+.. +. .... -....+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHh
Confidence 221 2334444433 332 333444444455444321 10 0011 1123467777777765
Q ss_pred C--ChHHHHHHHHHHHHHHhH
Q 008835 526 G--TDRAKRKAGSILELLQRI 544 (551)
Q Consensus 526 ~--~~~~k~~A~~lL~~l~~~ 544 (551)
. ++.+.+.+.++++.+...
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 3 678999999988886543
No 175
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.26 E-value=3 Score=40.54 Aligned_cols=155 Identities=17% Similarity=0.050 Sum_probs=121.3
Q ss_pred hhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCCCh-HH---HHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhc
Q 008835 386 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN-KA---RAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILAS 460 (551)
Q Consensus 386 i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~---~l~~~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~ 460 (551)
+...+.+..|+..|..=+.+.++++..+..++.....+ +. ..+.. -...|.-++.. .++++.-.+-.+|..+..
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 44568899999999998999999999999998875432 21 22222 22333333332 467778888899999999
Q ss_pred ChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---cHHHHHHHhhhCChHHHHHHHHH
Q 008835 461 HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELD---AEEALKELSESGTDRAKRKAGSI 537 (551)
Q Consensus 461 ~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~~~k~~A~~l 537 (551)
++.....+...+.+-.+.++++.++-++-..|..++--|-......+......+ ++...-.|+.+++--.|+.+..+
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 999888888888899999999999999999999999888777766666666544 57777889999999999999999
Q ss_pred HHHH
Q 008835 538 LELL 541 (551)
Q Consensus 538 L~~l 541 (551)
|.-|
T Consensus 233 Lgel 236 (341)
T 1upk_A 233 LGEL 236 (341)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 176
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.24 E-value=0.49 Score=45.96 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHH----HhhcC-CCHHHHHHHHHHHHhcccCCC
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLV----ELLSS-TDPRTQEHAVTALLNLSINDS 340 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv----~lL~~-~~~~~~~~a~~~L~nLs~~~~ 340 (551)
..+..+...+ +-+.+.+.-++..+|.++. ++.....+.+.+.-..++ ..+.. ..+..+.-+++++.|+..++.
T Consensus 103 ~~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 103 QQLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred HHHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence 3455555555 3334455666777777664 455555555443323333 33332 356778999999999998888
Q ss_pred chHHHhh--cCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhh-hhCcHHHHHHHhcc-CChhHHHHHHHHHHH
Q 008835 341 NKGTIVN--AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG-AAGAIPALIRLLCD-GTPRGKKDAATAIFN 416 (551)
Q Consensus 341 ~~~~i~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~n 416 (551)
.+..+.. ..+++.+...+.+.+..++..++.+++|++.........- ...++..+..++.. .+.+....++.||.+
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8877764 2244444444445578899999999999986421100000 11234444455543 477899999999999
Q ss_pred hccCCChHHHHHHc
Q 008835 417 LSIYQGNKARAVRA 430 (551)
Q Consensus 417 L~~~~~~~~~l~~~ 430 (551)
|...++....+.+.
T Consensus 261 L~~~~~~~~~lak~ 274 (304)
T 3ebb_A 261 LISDDSNAVQLAKS 274 (304)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCChhHHHHHHH
Confidence 99876555555544
No 177
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.95 E-value=2 Score=39.84 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=104.9
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC----C-------CHHHHHHHHHHHHhcccC
Q 008835 271 LLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS----T-------DPRTQEHAVTALLNLSIN 338 (551)
Q Consensus 271 Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~nLs~~ 338 (551)
.++.|++.. ++.-.+.+..|+..-+.++.....-...+|+..|+.+|.. + +...+...+.+|..+..+
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~ 84 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 84 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC
Confidence 445555432 2222334555554444444332222246788888888753 1 356778889999888776
Q ss_pred CCchHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--h-hHHhh----------hhCcHHHHHHHhcc-CC
Q 008835 339 DSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--N-KVAIG----------AAGAIPALIRLLCD-GT 403 (551)
Q Consensus 339 ~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~--~-~~~i~----------~~~~i~~Lv~lL~~-~~ 403 (551)
..+...+. ..+++..|+..|.+..+.++..++..|..++..++ + ...+. +..-+.++++.+++ .+
T Consensus 85 ~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~ 164 (233)
T 2f31_A 85 KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS 164 (233)
T ss_dssp HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSC
T ss_pred hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCCh
Confidence 66655555 57789999999988899999999998888886653 3 33222 22456678888874 34
Q ss_pred hhHHHHHHHHHHHhccCCCh-------HHHHHHcCChHHHHHhhcc-CChh
Q 008835 404 PRGKKDAATAIFNLSIYQGN-------KARAVRAGIVPPLMRFLKD-AGGG 446 (551)
Q Consensus 404 ~~~~~~a~~aL~nL~~~~~~-------~~~l~~~g~i~~Lv~lL~~-~~~~ 446 (551)
.+.+..++..+-.+...+++ |..+...|..+.+ +-+.. .++.
T Consensus 165 ~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~~~~~~ 214 (233)
T 2f31_A 165 IALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENED 214 (233)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCCHH
Confidence 55555555555555555543 2234455655444 44433 3443
No 178
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.72 E-value=1 Score=51.18 Aligned_cols=135 Identities=14% Similarity=0.060 Sum_probs=89.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhh---cCCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCc
Q 008835 276 ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL---SSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAI 351 (551)
Q Consensus 276 ~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i 351 (551)
.+.+|..+..++..|..++....... ...++.++..+ ..+++.++..++++++..+.. ..+. .. -..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHHH
Confidence 45678889999999999986533211 23344555444 335788999999999998753 1122 22 24688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh--CcHHHHHHHhccC--ChhHHHHHHHHHHHhccCC
Q 008835 352 PDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 352 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--~~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~ 421 (551)
+.++..|.+ +.++..|+.+|.+++.. .+..+... ..+..|..++..+ +...+..+..++..++...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888855 78899999999999842 23333221 3444555556543 4577888888888887644
No 179
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.70 E-value=0.053 Score=53.35 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=52.2
Q ss_pred CCCcccccccccCcCCee-ccCccc--ccHHHHHHHHH-hCCCCCCCCcccccCCCCccchhhHHHHHH
Q 008835 171 PDDFRCPISLELMKDPVI-VSTGQT--YERSCIQKWLD-AGHKTCPKTQQTLLHTALTPNYVLKSLIAL 235 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~-~~cgh~--~~~~ci~~~~~-~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~ 235 (551)
.-.+.||++...|..|+- ..|.|. |+...+-.... .+...||.|++.+...++..+..+...+..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 446899999999999996 689998 77666655554 366899999999998888888877776654
No 180
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.00 E-value=3.5 Score=41.32 Aligned_cols=172 Identities=17% Similarity=0.171 Sum_probs=109.5
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhH-HHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHhc
Q 008835 269 DALLGKLANGN-VEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNL 335 (551)
Q Consensus 269 ~~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nL 335 (551)
..++..|.++. .+.....+..|+.-.+.++... ..+. .+|+..|+.+|.. .+...+...+.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34455555442 3333445666665444444332 2333 6778999988852 2457788889999988
Q ss_pred ccCCCchHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--h-hHHhh----------hhCcHHHHHHHhcc
Q 008835 336 SINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--N-KVAIG----------AAGAIPALIRLLCD 401 (551)
Q Consensus 336 s~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~--~-~~~i~----------~~~~i~~Lv~lL~~ 401 (551)
..+..+...++ ...++..|+..|.+..+.++..++.+|..++..++ + ...+. +..-+..++..|++
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 77666666555 57789999999999999999999999988887653 2 22222 22457788888887
Q ss_pred C-ChhHHHHHHHHHHHhccCCCh---H----HHHHHcCChHHHHHhhcc
Q 008835 402 G-TPRGKKDAATAIFNLSIYQGN---K----ARAVRAGIVPPLMRFLKD 442 (551)
Q Consensus 402 ~-~~~~~~~a~~aL~nL~~~~~~---~----~~l~~~g~i~~Lv~lL~~ 442 (551)
+ +.+.+..++..+-.+....++ | ..+...|..+.+-. |..
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 4 556666555555556555443 2 23445666555544 554
No 181
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.93 E-value=0.66 Score=44.00 Aligned_cols=178 Identities=12% Similarity=0.105 Sum_probs=110.3
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhh-h-CcHHHHHHHhccCChhHHHHHHHHHHHhcc---CCChHH
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA-A-GAIPALIRLLCDGTPRGKKDAATAIFNLSI---YQGNKA 425 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~-~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~---~~~~~~ 425 (551)
=+.+...|-+.+..-+..++..|..... .+...+.. . ..++.+.-.+.+.+..+...++.+|..+.. ..+.+.
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3445555556666666666666554321 11122211 1 123433334456777787777777776532 111111
Q ss_pred HHHH-cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 008835 426 RAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 504 (551)
Q Consensus 426 ~l~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~ 504 (551)
.-.+ .-++|.|++-+.+..+.+++.+-.++..++... --...++.+++-+.+.+.+.|+.++..|..+-...+
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 1111 235889999998888889998888887776421 011355667777788899999999988888754221
Q ss_pred HHHHHHHHcCcH---HHHHHHhhhCChHHHHHHHHHHHHH
Q 008835 505 EQLKIARELDAE---EALKELSESGTDRAKRKAGSILELL 541 (551)
Q Consensus 505 ~~~~~~~~~g~i---~~L~~ll~~~~~~~k~~A~~lL~~l 541 (551)
.. ....+ +.+..++.+.+..+|..|..++-.+
T Consensus 200 ~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 200 IS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp SG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred CC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11 23467 8899999999999999998877654
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.57 E-value=4.1 Score=41.59 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
.....++... +++...+.-|+.-|....++-++.... ++..++.+..+.|..+|..|+..|-.++.+ ++-..
T Consensus 29 ~~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k- 100 (507)
T 3u0r_A 29 DAYQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR- 100 (507)
T ss_dssp HHHHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-
Confidence 3455555544 456888888999999998887765543 467899999999999999999999999988 44333
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 416 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~n 416 (551)
+.+.|+++|..+++.-....-.+|..|-..+ ..+.+..|+.-+.++++.+++.++..|..
T Consensus 101 ----iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 101 ----VADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp ----HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 3678899999887655555555555543222 13566777777767788888888888764
No 183
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.55 E-value=3.1 Score=47.08 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=105.8
Q ss_pred hcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHh---ccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHH
Q 008835 359 KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL---CDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPP 435 (551)
Q Consensus 359 ~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL---~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~ 435 (551)
.+.++..++.++.++..++..-.. .....++.++..+ .++++.++..+++++..++..-...... -..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-INSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHH
Confidence 345788899999999998865321 0123445555544 3346788999999999887532111222 2467888
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhC--CCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCC-HHHHHHH
Q 008835 436 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTG--SPRNRENAAAVLWAICTGD-AEQLKIA 510 (551)
Q Consensus 436 Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~--~~v~~L~~lL~~~--~~~~k~~A~~~L~~L~~~~-~~~~~~~ 510 (551)
|+..|.+ +.++..|+.+|.+++.. .+..+... ..+..+..++..+ +...+..+..++..+...- ++.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 78999999999999953 22223211 2344455555543 4678888888888887643 2333333
Q ss_pred HHcCcHHHHHHH----hhhC-ChHHHHHHHHHHHHHHh
Q 008835 511 RELDAEEALKEL----SESG-TDRAKRKAGSILELLQR 543 (551)
Q Consensus 511 ~~~g~i~~L~~l----l~~~-~~~~k~~A~~lL~~l~~ 543 (551)
.+. +++.+... ..+. +++.+.....++..|..
T Consensus 610 ~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 610 LHS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp HHH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 222 34444433 3333 66666665566655543
No 184
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.22 E-value=0.13 Score=53.46 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh-hcCCcHHHHHHH
Q 008835 280 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVL 358 (551)
Q Consensus 280 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L 358 (551)
..+++.|+..|..+ .+-+.. ..++..|+..+..+..+++-.++-.|..+ . +.+. -.++++.++.-|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~-----DLL~~Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K-----EFVEDKDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G-----GGCCCHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H-----HHHHHHHHHHHHHHhhc
Confidence 45788888888888 654433 34455566666788899999999888888 1 1111 256678888888
Q ss_pred hcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCC--hhHHHHHHHHHHHhccCCChHHHHHHcCChHHH
Q 008835 359 KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT--PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPL 436 (551)
Q Consensus 359 ~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~L 436 (551)
.+.+.+++..||.+|..++.. +.. ..++..+.+.|.+.+ .......+..|+.|+..+.+. ......||.|
T Consensus 309 ~D~DDDVRAVAAetLiPIA~p-~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL 380 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFPIT-DSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDI 380 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSCCS-STH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGT
T ss_pred CCcccHHHHHHHHHhhhhcch-hhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHH
Confidence 899999999999999998821 111 133444555555432 122334455566665544311 1123789999
Q ss_pred HHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHH-HHhcCCHHHHHHHHHHH
Q 008835 437 MRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLME-VIRTGSPRNRENAAAVL 496 (551)
Q Consensus 437 v~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~-lL~~~~~~~k~~A~~~L 496 (551)
.++|.+.-..++..++.+|..+. ...++..+.+ +|-..++++++.+..+-
T Consensus 381 ~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 381 FPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999999999987776 1123333333 33456677777666554
No 185
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.53 E-value=5.1 Score=40.20 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=106.4
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHhccc
Q 008835 270 ALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 270 ~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~ 337 (551)
..++.|.+.. .....+.+..|+...+.++.....-...+|+..|+.+|.. .+...+..++.+|..+..
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 3455555443 2222234555554444444332221135778888888742 145678888999998877
Q ss_pred CCCchHHHh-hcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--h-hHHhh----------hhCcHHHHHHHhccC-
Q 008835 338 NDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--N-KVAIG----------AAGAIPALIRLLCDG- 402 (551)
Q Consensus 338 ~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~--~-~~~i~----------~~~~i~~Lv~lL~~~- 402 (551)
+..+...++ ..+++..|+..|.+..+.++..++.+|..+|..++ + ...+. +..-+..+++.+.++
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~ 167 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 167 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCC
Confidence 666655555 57789999999988889999999988888887653 3 22222 224666788888743
Q ss_pred ChhHHHHHHHHHHHhccCCCh-------HHHHHHcCChHHHHHhhcc-CChhh
Q 008835 403 TPRGKKDAATAIFNLSIYQGN-------KARAVRAGIVPPLMRFLKD-AGGGM 447 (551)
Q Consensus 403 ~~~~~~~a~~aL~nL~~~~~~-------~~~l~~~g~i~~Lv~lL~~-~~~~~ 447 (551)
+.+.+..++..+-.|...+++ |..+...|..+.+ .-|.. .++.+
T Consensus 168 ~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L 219 (386)
T 2bnx_A 168 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDM 219 (386)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhH
Confidence 455565555555555555543 2335556655554 44444 44443
No 186
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.19 E-value=2.2 Score=39.52 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=93.0
Q ss_pred hcCCcHHHHHHHhc----C-------CHHHHHHHHHHHHHhcCCcchhHHhhhh-CcHHHHHHHhccCChhHHHHHHHHH
Q 008835 347 NAGAIPDIVDVLKN----G-------SMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDGTPRGKKDAATAI 414 (551)
Q Consensus 347 ~~g~i~~Lv~~L~~----~-------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~a~~aL 414 (551)
..+|+..|+.+|.. + +......+..+|..+.....+...+... +++..|+..|.+.++.++..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 35667777777653 1 2355677888888887776665555554 7899999999988999999999999
Q ss_pred HHhccCCC--h-HHHHHH----------cCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhh-------HHHhhhCCC
Q 008835 415 FNLSIYQG--N-KARAVR----------AGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEG-------KTAIGQAEP 473 (551)
Q Consensus 415 ~nL~~~~~--~-~~~l~~----------~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~-------~~~i~~~~~ 473 (551)
.-+|..++ + ...+++ ..-...+++.|.. .+.+....++..+-.+...++. |.++... +
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~-G 199 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-G 199 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT-T
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-C
Confidence 99988764 5 444332 2346678888864 4455666666666667665542 3344444 4
Q ss_pred HHHHHHHHhc-CCHHHH
Q 008835 474 IPVLMEVIRT-GSPRNR 489 (551)
Q Consensus 474 v~~L~~lL~~-~~~~~k 489 (551)
+..+++-|+. .++...
T Consensus 200 l~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 200 LHQVLQELREIENEDMK 216 (233)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred hHHHHHHHhccCCHHHH
Confidence 5555555554 445543
No 187
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=89.85 E-value=0.12 Score=48.56 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 008835 353 DIVDVLKNGSMEARENAAAT 372 (551)
Q Consensus 353 ~Lv~~L~~~~~~~~~~aa~~ 372 (551)
.+..+++++++.++..++..
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHc
Confidence 34444555666666666553
No 188
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.79 E-value=2.5 Score=48.31 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHhcccCCCc-hHHHhhcCCcHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHH
Q 008835 320 TDPRTQEHAVTALLNLSINDSN-KGTIVNAGAIPDIVDVLKN-----GSMEARENAAATLFSLSVIDENKVAIGAAGAIP 393 (551)
Q Consensus 320 ~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~~L~~-----~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~ 393 (551)
.+...++.++++++.++..... ...-.-..+++.|+.++.. ....++..++|+++..+..-...... -..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence 5788999999999999875432 2222234567788888763 22345567778888765432111111 124555
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHH------cCChHHHHHhh----ccCChhhHHHHHHHHHHHhcC
Q 008835 394 ALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR------AGIVPPLMRFL----KDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 394 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~------~g~i~~Lv~lL----~~~~~~~~~~al~~L~nL~~~ 461 (551)
.|+..+.+.+++++..|++++.+||.. .+..++. ...++.++..+ ..-+..-...+..+++.+...
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 566666666788999999999999974 2233432 12344444433 333455556677777777664
No 189
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.65 E-value=1.1 Score=51.29 Aligned_cols=142 Identities=9% Similarity=-0.015 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHhcccCCCchHHHhhcCCcH
Q 008835 278 GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIP 352 (551)
Q Consensus 278 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~ 352 (551)
.+|...+.++++++.++..-......-.-..++|.|+.++.+ ....++..++++++..+.--...... =...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence 579999999999999996543332222223567888888763 22335557779998876421100111 122344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhh------hCcHHHHHHHh----ccCChhHHHHHHHHHHHhccCCC
Q 008835 353 DIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA------AGAIPALIRLL----CDGTPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 353 ~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~------~~~i~~Lv~lL----~~~~~~~~~~a~~aL~nL~~~~~ 422 (551)
.|++.+....+.++..|++++.+|+.. .+..+.. ...++.++..+ ..-+......+..++..+....+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 455555556788999999999999853 3344432 13455554433 33456666777888888877554
No 190
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.89 E-value=5.9 Score=39.66 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=93.0
Q ss_pred cCCcHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCcchhHHhhhh-CcHHHHHHHhccCChhHHHHHHHHHH
Q 008835 348 AGAIPDIVDVLKN-----------GSMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDGTPRGKKDAATAIF 415 (551)
Q Consensus 348 ~g~i~~Lv~~L~~-----------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~a~~aL~ 415 (551)
.+|+..|+.+|.. .+......+..+|..+-.+..+...+..+ .++..|+..|.+..+.++..|+..|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5678888888852 13456778888998887776665555554 88999999999999999999999999
Q ss_pred HhccCCC--h-HHHHHH----------cCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhh-------HHHhhhCCCH
Q 008835 416 NLSIYQG--N-KARAVR----------AGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEG-------KTAIGQAEPI 474 (551)
Q Consensus 416 nL~~~~~--~-~~~l~~----------~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~-------~~~i~~~~~v 474 (551)
-+|..++ + ...+++ ..-...+++.|.. .+.+....++..+-.+...++. |..+...| +
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l 266 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-L 266 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-H
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-h
Confidence 9998764 3 444332 2347788888876 4556666667666666665432 33444444 4
Q ss_pred HHHHHHHhc
Q 008835 475 PVLMEVIRT 483 (551)
Q Consensus 475 ~~L~~lL~~ 483 (551)
..++.-|+.
T Consensus 267 ~~il~~lr~ 275 (383)
T 3eg5_B 267 HQVLQELRE 275 (383)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 445555664
No 191
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.78 E-value=16 Score=41.40 Aligned_cols=204 Identities=13% Similarity=0.059 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCC---CHHHHHHHHHHHHhccc--CCC----chHHHhhcC
Q 008835 279 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST---DPRTQEHAVTALLNLSI--NDS----NKGTIVNAG 349 (551)
Q Consensus 279 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~--~~~----~~~~i~~~g 349 (551)
+++.+.+|-..|..+-+ ++ ++......+|.++ ++.++--|+.+|.+... .++ .+..+ .
T Consensus 21 d~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r-- 87 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS-SS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-R-- 87 (980)
T ss_dssp CHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-H--
T ss_pred CHHHHHHHHHHHHHHHc-Ch---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-H--
Confidence 67888888888877764 34 3455666777653 68899989888887543 222 22222 2
Q ss_pred CcHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCCh-hHHHHHHHHHHHhcc----
Q 008835 350 AIPDIVDVLKN-----GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIFNLSI---- 419 (551)
Q Consensus 350 ~i~~Lv~~L~~-----~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~---- 419 (551)
..++.++.. +..-++...+.+|..+...... -...+.++.++.++..++. ......+++|..|..
T Consensus 88 --~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 88 --DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp --HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHh
Confidence 234444432 2456777777777766532210 0123788889988877544 445556666664432
Q ss_pred CC---C----hHH-----HHHHcC---ChHHHHHhhcc----CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHH
Q 008835 420 YQ---G----NKA-----RAVRAG---IVPPLMRFLKD----AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEV 480 (551)
Q Consensus 420 ~~---~----~~~-----~l~~~g---~i~~Lv~lL~~----~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~l 480 (551)
.. + .|. .+.+.. +++....+|.. .++.++..++.+|........ ...+...+.++.+..+
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~ 241 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSF 241 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHH
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHH
Confidence 11 0 111 122211 13333444432 567788888888887776432 2344556778888888
Q ss_pred HhcCCHHHHHHHHHHHHHHhcCC
Q 008835 481 IRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 481 L~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
|. ++..+..|+.+|..+....
T Consensus 242 L~--~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 242 LQ--IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp TT--SHHHHHHHHHHHHHHHHSC
T ss_pred cC--ChHHHHHHHHHHHHHHHcC
Confidence 75 4889999999999988755
No 192
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.73 E-value=18 Score=41.46 Aligned_cols=200 Identities=16% Similarity=0.109 Sum_probs=107.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHh----cC---CHHHHHHhhcCCCHHHHHHHHHHHHhcccC-
Q 008835 267 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE----AG---AIPLLVELLSSTDPRTQEHAVTALLNLSIN- 338 (551)
Q Consensus 267 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~----~g---~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~- 338 (551)
..-.|++.|..-+.+...+....+. ..+..|.++.+ .| ++..+.+++.++.....+ |+.+|..+...
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~ 386 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ 386 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC
Confidence 3444555555555443333332222 23444444443 45 566666677665444333 33333322111
Q ss_pred CCchHHHhhcCCcHHHHHHHhcC----CHHHHHHHHHHHHHhc----CCcchhHHhhhhCcHHHHH----HHhccCChhH
Q 008835 339 DSNKGTIVNAGAIPDIVDVLKNG----SMEARENAAATLFSLS----VIDENKVAIGAAGAIPALI----RLLCDGTPRG 406 (551)
Q Consensus 339 ~~~~~~i~~~g~i~~Lv~~L~~~----~~~~~~~aa~~L~~Ls----~~~~~~~~i~~~~~i~~Lv----~lL~~~~~~~ 406 (551)
.... ..++.+..++.++ ++.++..+.-++..|. .....+ ....++.+. +.+..++..-
T Consensus 387 ~Pt~------e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~ 456 (1056)
T 1lsh_A 387 QATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEE 456 (1056)
T ss_dssp CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHH
T ss_pred CCCH------HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHH
Confidence 1222 2345566666543 5666666666666553 221111 112234444 4455667777
Q ss_pred HHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHH
Q 008835 407 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLME 479 (551)
Q Consensus 407 ~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~-------~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~ 479 (551)
+..++++|.|+... ..++.|.+++.. ....++..|+.+|.+++..... .+-+.++.
T Consensus 457 ~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~ 519 (1056)
T 1lsh_A 457 IVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLP 519 (1056)
T ss_dssp HHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHH
T ss_pred HHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHH
Confidence 88999999998653 356677777642 1235667788888888753110 12345667
Q ss_pred HHhc--CCHHHHHHHHHHHHH
Q 008835 480 VIRT--GSPRNRENAAAVLWA 498 (551)
Q Consensus 480 lL~~--~~~~~k~~A~~~L~~ 498 (551)
+..+ .++++|..|+.+|..
T Consensus 520 i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 520 IFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHHCTTSCHHHHHHHHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHH
Confidence 6744 457888888777754
No 193
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.10 E-value=1.1 Score=34.04 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=37.5
Q ss_pred CCcccccccccCc-----CCeec--cCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 172 DDFRCPISLELMK-----DPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 172 ~~~~Cpic~~~~~-----~Pv~~--~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
..-.|.||.+-.- +|.+. .|+...||.|++-=.++|+..||.|+.++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4468999987532 34443 688899999999888889999999987775
No 194
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.72 E-value=7.2 Score=39.83 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=91.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhC
Q 008835 392 IPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA 471 (551)
Q Consensus 392 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~ 471 (551)
...++... .|+...+..|+..|.....+=+.. ...++..++++..+.+..++..|+.-|..+|.. +...
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~----- 99 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP----- 99 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----
Confidence 33444433 457888888988888766533322 223467789999888999999999999999987 4332
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHH
Q 008835 472 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 539 (551)
Q Consensus 472 ~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 539 (551)
..+..|+++|++.++......-..|..|-..++. |.+..|..-+.++++.+|+++...|+
T Consensus 100 kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 100 RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3456789999988888777777888887776653 34566666666678888877766663
No 195
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.54 E-value=6.7 Score=39.32 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=92.0
Q ss_pred cCCcHHHHHHHhc----C-------CHHHHHHHHHHHHHhcCCcchhHHhhhh-CcHHHHHHHhccCChhHHHHHHHHHH
Q 008835 348 AGAIPDIVDVLKN----G-------SMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDGTPRGKKDAATAIF 415 (551)
Q Consensus 348 ~g~i~~Lv~~L~~----~-------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~a~~aL~ 415 (551)
.+|+..|+.+|.. + +......++.+|..+..+..+...+... +++..++..|.+..+.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4567777777642 1 2456677888888887776655555554 88999999998888999999999999
Q ss_pred HhccCCC--h-HHHHHH----------cCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhh-------HHHhhhCCCH
Q 008835 416 NLSIYQG--N-KARAVR----------AGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEG-------KTAIGQAEPI 474 (551)
Q Consensus 416 nL~~~~~--~-~~~l~~----------~g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~-------~~~i~~~~~v 474 (551)
.+|..++ + ...+++ ..-...+++.+.. .+.+....++..+-.+...++. |..+... ++
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~-GL 204 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-GL 204 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-TH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-Ch
Confidence 8988764 4 443332 2356678888864 4556666677777667665443 3344444 45
Q ss_pred HHHHHHHhc-CCHHH
Q 008835 475 PVLMEVIRT-GSPRN 488 (551)
Q Consensus 475 ~~L~~lL~~-~~~~~ 488 (551)
..+++-|+. +++.+
T Consensus 205 ~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 205 HQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHHTTCCCHHH
T ss_pred HHHHHHHhccCChhH
Confidence 555555654 44443
No 196
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=86.13 E-value=42 Score=38.04 Aligned_cols=284 Identities=12% Similarity=0.014 Sum_probs=156.9
Q ss_pred chhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcCcccHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhC-hh--
Q 008835 226 NYVLKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAIDALLGKLANG---NVEEQRAAAGELRLLAKRN-AD-- 299 (551)
Q Consensus 226 n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~---~~~~~~~a~~~L~~L~~~~-~~-- 299 (551)
+...+....+|+.+-... .++.......|.++ ++.++.-|+..|.+..+.- ++
T Consensus 21 d~~~r~~A~~~L~~~q~s---------------------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS---------------------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS---------------------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred CHHHHHHHHHHHHHHHcC---------------------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 466677777777652210 13566666777543 6888988988888776532 22
Q ss_pred --hHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHhcccC--CCchHHHhhcCCcHHHHHHHhcCCH-HHHHHHHHHH
Q 008835 300 --NRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSIN--DSNKGTIVNAGAIPDIVDVLKNGSM-EARENAAATL 373 (551)
Q Consensus 300 --~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L 373 (551)
.+..+. ...++.+...-. ....-++...+.++..++.. +.. -.+.++.++..+..++. ......+.+|
T Consensus 80 ~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-----Wp~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 80 LLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-----WNDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp HHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-----CchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 333332 233344443110 23566888888888887653 222 35677888888876543 3444555666
Q ss_pred HHhcCC----c-----c--h-----hHHhhhh---CcHHHHHHHhcc----CChhHHHHHHHHHHHhccCCChHHHHHHc
Q 008835 374 FSLSVI----D-----E--N-----KVAIGAA---GAIPALIRLLCD----GTPRGKKDAATAIFNLSIYQGNKARAVRA 430 (551)
Q Consensus 374 ~~Ls~~----~-----~--~-----~~~i~~~---~~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~l~~~ 430 (551)
..++.. . . . +..+... .+++.+..+|.. .++.+...++.+|......-+ -..+++.
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~ 232 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNE 232 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcc
Confidence 644321 0 0 0 2222221 124444455533 577788888888887766432 2345667
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcC---hhhHHHhhhCCCHHHHHHHHh-----cCCHHHHHHHHHHHHHHhc-
Q 008835 431 GIVPPLMRFLKDAGGGMVDEALAILAILASH---QEGKTAIGQAEPIPVLMEVIR-----TGSPRNRENAAAVLWAICT- 501 (551)
Q Consensus 431 g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~---~~~~~~i~~~~~v~~L~~lL~-----~~~~~~k~~A~~~L~~L~~- 501 (551)
+.++.+..+|.+ +.++..|+.+|..+... ++.+..++.. + .+...+. ..+.+..+.-+.++..++.
T Consensus 233 ~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 233 PCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 788888888864 78899999999988764 3344333332 1 1222222 2444544444444433322
Q ss_pred -----CC-----HHHHHHHH--HcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 502 -----GD-----AEQLKIAR--ELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 502 -----~~-----~~~~~~~~--~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.. ++...... -.+.++.++.+..+++.++...+...+..+-
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 308 LVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp HHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred HHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 11 11111111 1257788888888887777666655554443
No 197
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=84.56 E-value=8.4 Score=44.12 Aligned_cols=189 Identities=11% Similarity=0.052 Sum_probs=96.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHhccc----CCCchHHHhhcCCcHHHHHHH----hcC------------------
Q 008835 308 GAIPLLVELLSSTDPRTQEHAVTALLNLSI----NDSNKGTIVNAGAIPDIVDVL----KNG------------------ 361 (551)
Q Consensus 308 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~~L----~~~------------------ 361 (551)
.+++.++.....++.++...++.....++. .+..+.... ..++.|+..+ .-+
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~--~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~ 421 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE--EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGH--HHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence 456677776677777887777776666654 222222111 2233333322 110
Q ss_pred -CH---HHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc--CChhHHHHHHHHHHHhccCCChH-HHHHHcCChH
Q 008835 362 -SM---EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD--GTPRGKKDAATAIFNLSIYQGNK-ARAVRAGIVP 434 (551)
Q Consensus 362 -~~---~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~~-~~l~~~g~i~ 434 (551)
+. ..+..+..+|..++..... .+. .-+.+.+-..+.. .+.+.++.++.+++.++..-... ..-.-..+++
T Consensus 422 ~d~d~~~~~~~~~~~L~~l~~~~~~--~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~ 498 (1049)
T 3m1i_C 422 KESDTIQLYKSEREVLVYLTHLNVI--DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHH--HHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHccCHH--HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence 11 2234455666666522211 000 0122333333432 45678899999999987543222 1111112333
Q ss_pred HHHHhhcc-----CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 008835 435 PLMRFLKD-----AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 502 (551)
Q Consensus 435 ~Lv~lL~~-----~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~ 502 (551)
.|..+... +++.++..++.++...+..-........ .+++.++..|.+.++.++..|+.++.++|..
T Consensus 499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34433221 1222333466666655542111111111 3567777778777899999999999999974
No 198
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=83.83 E-value=27 Score=34.09 Aligned_cols=127 Identities=11% Similarity=0.099 Sum_probs=95.3
Q ss_pred HHHhccCCChHH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHh-cCCHHHHHH
Q 008835 414 IFNLSIYQGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-TGSPRNREN 491 (551)
Q Consensus 414 L~nL~~~~~~~~-~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~-~~~~~~k~~ 491 (551)
|.||..++.+.. -+++.++|..+...+.-++.++....++.|..++....-...=. ...+|.++..+. ++.+++--.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence 456666665544 58999999999999999999999999999998887543221111 246788888886 467888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC-------ChHHHHHHHHHHHHH
Q 008835 492 AAAVLWAICTGDAEQLKIARELDAEEALKELSESG-------TDRAKRKAGSILELL 541 (551)
Q Consensus 492 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~k~~A~~lL~~l 541 (551)
..+.|.|+..+........+..|++..|...+... +..-|+.|..++.+.
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 99999999988877888889999999999876443 233455666766554
No 199
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=83.76 E-value=15 Score=41.97 Aligned_cols=220 Identities=16% Similarity=0.134 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHhcccC------
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSIN------ 338 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~------ 338 (551)
..+..++..+.+++.+.+.+|-..|..+-+ ++ ++...+..+|. +.+..+|..|+..|.|....
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~ 85 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCC
Confidence 456666666666777777778778877754 33 45556666664 45888999999999887531
Q ss_pred CCchHHHhhcCCcHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHH
Q 008835 339 DSNKGTIVNAGAIPDIVDVLKNG-----SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA 413 (551)
Q Consensus 339 ~~~~~~i~~~g~i~~Lv~~L~~~-----~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~a 413 (551)
++.+..| ....+..+...-..+ +..++...+.++..++..+-.. ...+.++.|+.+++ .+...+..++.+
T Consensus 86 ~~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 86 NDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMIV 160 (1049)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHHH
Confidence 1223222 222333333222111 2456777777777765442110 12378899999986 455556667777
Q ss_pred HHHhccC-----CC----hH-----HHHHHc--CChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHH
Q 008835 414 IFNLSIY-----QG----NK-----ARAVRA--GIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPV 476 (551)
Q Consensus 414 L~nL~~~-----~~----~~-----~~l~~~--g~i~~Lv~lL~~-~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~ 476 (551)
|..|+.. .+ .+ ..+... .++..+...+.+ .+..++..++.++.+....-.. ..+.+...++.
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~ 239 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILEL 239 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHH
Confidence 7766521 11 11 112221 223334444543 4566788888888877664322 22444566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcC
Q 008835 477 LMEVIRTGSPRNRENAAAVLWAICTG 502 (551)
Q Consensus 477 L~~lL~~~~~~~k~~A~~~L~~L~~~ 502 (551)
+.+.+. .++..+..|+.+|..+...
T Consensus 240 l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 240 LSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 663332 3688899999999888865
No 200
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.75 E-value=8.1 Score=35.62 Aligned_cols=144 Identities=15% Similarity=0.024 Sum_probs=96.8
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHH-HhccCChhHHHHHHHHHHHhcc-CCChHHHHH
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIR-LLCDGTPRGKKDAATAIFNLSI-YQGNKARAV 428 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~l~ 428 (551)
++....+..++..++|..|+.+|..+ ... ...++.+.. +-.+.+-++++.++.++..++. ....
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 34444555666789999999988877 211 235566666 4456778999999999998875 2222
Q ss_pred HcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHhhhC-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH
Q 008835 429 RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA-EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL 507 (551)
Q Consensus 429 ~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~~~~~~i~~~-~~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~ 507 (551)
..++.+.....+++..++..|...+.--+..+.- -.+. -+++.|-.+..+.+.-+|....+.|-.++..+|+-+
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 1567788889999999988887766433322110 0111 134444445556678899999999999999999877
Q ss_pred HHHHHc
Q 008835 508 KIAREL 513 (551)
Q Consensus 508 ~~~~~~ 513 (551)
..+++.
T Consensus 214 ~~~~~~ 219 (240)
T 3l9t_A 214 KIELKN 219 (240)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 766654
No 201
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=83.52 E-value=14 Score=35.26 Aligned_cols=145 Identities=11% Similarity=0.088 Sum_probs=97.3
Q ss_pred cHHHHHHHhcC------CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHh--ccCChhHHHHHHHHHHHhccCCC
Q 008835 351 IPDIVDVLKNG------SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL--CDGTPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 351 i~~Lv~~L~~~------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL--~~~~~~~~~~a~~aL~nL~~~~~ 422 (551)
+..+..++++| +.+....|+..|..+|.+-.+-.+|.... ...|-.++ ...++.+++.|+++|..-..+.+
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 45566777777 34567789999999998887777777642 33333333 33456789999999988777665
Q ss_pred hHHH-HHH--cCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcC--CHHHHH
Q 008835 423 NKAR-AVR--AGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRE 490 (551)
Q Consensus 423 ~~~~-l~~--~g~i~~Lv~lL~~-------~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~--~~~~k~ 490 (551)
.... +.+ ...+..+..-|.. ....++..-+++|.-|..++.. + ...++..|.+++... .+.+|.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHH
Confidence 5444 332 3455555544433 2345677788888888887621 2 245778888888777 788999
Q ss_pred HHHHHHHHHh
Q 008835 491 NAAAVLWAIC 500 (551)
Q Consensus 491 ~A~~~L~~L~ 500 (551)
.+..++..+-
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9988887765
No 202
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=81.58 E-value=25 Score=34.33 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=83.4
Q ss_pred HHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHHh--hcCCcHHHHHHHh-cCCHHHH
Q 008835 290 LRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPDIVDVLK-NGSMEAR 366 (551)
Q Consensus 290 L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~~L~-~~~~~~~ 366 (551)
|.+|.-+++...+-++..++|..+......++.++.+.....|+..|... ..-. -...+|-++..+. +++.++.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak---sL~~t~L~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK---ALAKTPLENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG---GGGTSCCTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH---HHhhccccccchHHHHHhccCCCcceE
Confidence 34444467788889999999999999999999999999999999887432 2111 2446777777775 5678999
Q ss_pred HHHHHHHHHhcCCcc-hhHHhhhhCcHHHHHHHhcc
Q 008835 367 ENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLCD 401 (551)
Q Consensus 367 ~~aa~~L~~Ls~~~~-~~~~i~~~~~i~~Lv~lL~~ 401 (551)
......|.|...... .+......|+|+.|-..+..
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 999999999987764 45555667999998887643
No 203
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.43 E-value=53 Score=37.54 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=100.0
Q ss_pred CHHHHHHhhcC----CCHHHHHHHHHHHHhccc----CCCchHHHhhcCCcHHHH----HHHhcCCHHHHHHHHHHHHHh
Q 008835 309 AIPLLVELLSS----TDPRTQEHAVTALLNLSI----NDSNKGTIVNAGAIPDIV----DVLKNGSMEARENAAATLFSL 376 (551)
Q Consensus 309 ~i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv----~~L~~~~~~~~~~aa~~L~~L 376 (551)
.+..+..++.+ .++.++..++-+++.|.. +.... ....++.+. +.+.+++.+-+..++.+|+|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34455566655 356677778877777753 21111 112244444 444566777788899999998
Q ss_pred cCCcchhHHhhhhCcHHHHHHHhcc-------CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc--CChhh
Q 008835 377 SVIDENKVAIGAAGAIPALIRLLCD-------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGM 447 (551)
Q Consensus 377 s~~~~~~~~i~~~~~i~~Lv~lL~~-------~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~ 447 (551)
... ..++.|..++.. ...+++..|++||.++....+.. +-+.|++++.+ .+.++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHH
Confidence 653 356777777642 23578889999999987543222 23346777754 55666
Q ss_pred HHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCC
Q 008835 448 VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 448 ~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~-~~~~~k~~A~~~L~~L~~~~ 503 (551)
+..|+.+| +-.+|.. ..+..+...+.. .+..+.......|.+++...
T Consensus 531 RiaA~~~L--m~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIRSCIVF--FESKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHH--HHTCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH--HHHCcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 66665555 3333321 235556666665 45777777777777777655
No 204
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=80.29 E-value=14 Score=35.41 Aligned_cols=148 Identities=7% Similarity=0.060 Sum_probs=97.2
Q ss_pred CcHHHHHHHhccC------ChhHHHHHHHHHHHhccCCChHHHHHHc--CChHHHHHhhccCChhhHHHHHHHHHHHhc-
Q 008835 390 GAIPALIRLLCDG------TPRGKKDAATAIFNLSIYQGNKARAVRA--GIVPPLMRFLKDAGGGMVDEALAILAILAS- 460 (551)
Q Consensus 390 ~~i~~Lv~lL~~~------~~~~~~~a~~aL~nL~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~- 460 (551)
..+..+..+++++ +......|+-.|..++.+=..-.++++. ..+..|+ +....++.+.+.|..++...-.
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence 3455666777776 2344567777777777665555566653 3333343 2233566788999999987666
Q ss_pred ChhhHHHhhhC--CCHHHHHHHHhc-------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC--ChH
Q 008835 461 HQEGKTAIGQA--EPIPVLMEVIRT-------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDR 529 (551)
Q Consensus 461 ~~~~~~~i~~~--~~v~~L~~lL~~-------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~ 529 (551)
+|.....|.+. ..+..+..-|.. ........-+++|-.|...+... ....+..|.+++..+ .+.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHH
Confidence 57777766653 556666655543 23455566678888888776222 144678888888877 999
Q ss_pred HHHHHHHHHHHHHh
Q 008835 530 AKRKAGSILELLQR 543 (551)
Q Consensus 530 ~k~~A~~lL~~l~~ 543 (551)
+|.|+..++..+-.
T Consensus 176 ~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 176 LQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc
Confidence 99999998887764
No 205
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=77.57 E-value=26 Score=40.03 Aligned_cols=220 Identities=15% Similarity=0.087 Sum_probs=131.9
Q ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcccC----
Q 008835 264 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIN---- 338 (551)
Q Consensus 264 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~---- 338 (551)
+-..+..++..+-+++.+.+.+|-..|..+-+ ++ ++.+.+..+|.. .++.+|--|+.+|.+....
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 34678888888888888877777777766543 44 334444455544 4889999999999887542
Q ss_pred -CCchHHHhhcCCcHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHH
Q 008835 339 -DSNKGTIVNAGAIPDIVDVLKN-----GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAAT 412 (551)
Q Consensus 339 -~~~~~~i~~~g~i~~Lv~~L~~-----~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~ 412 (551)
+.....-+....+..+...-.+ .++.++...+.++..+...+-.. ...+.++-++.++.. ++......+.
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~ 171 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMV 171 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHH
Confidence 1111122233334444443222 23556666666666665332110 124678888888765 3455666777
Q ss_pred HHHHhccC--C-------ChHH-----HHHHcCChHHHHHh----hcc-CChhhHHHHHHHHHHHhcChhhHHHhhhCCC
Q 008835 413 AIFNLSIY--Q-------GNKA-----RAVRAGIVPPLMRF----LKD-AGGGMVDEALAILAILASHQEGKTAIGQAEP 473 (551)
Q Consensus 413 aL~nL~~~--~-------~~~~-----~l~~~g~i~~Lv~l----L~~-~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~ 473 (551)
+|..|+.. . ..|. .+.. -++.++.+ |.. .++.+...++.+|....+.-.. ..+.+.+.
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~l 248 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchH
Confidence 77776542 1 1111 1222 14444444 432 5677788889999988886432 34666777
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHHhcC
Q 008835 474 IPVLM-EVIRTGSPRNRENAAAVLWAICTG 502 (551)
Q Consensus 474 v~~L~-~lL~~~~~~~k~~A~~~L~~L~~~ 502 (551)
++.++ .+| +++..+..|+.+|..+...
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 77774 555 5788999999999998865
No 206
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=77.27 E-value=19 Score=33.17 Aligned_cols=140 Identities=16% Similarity=0.077 Sum_probs=91.1
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHhccc--CCCc
Q 008835 266 AAIDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LLSSTDPRTQEHAVTALLNLSI--NDSN 341 (551)
Q Consensus 266 ~~i~~Lv~~L~-s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~--~~~~ 341 (551)
..+..+...|. +...+++..|+..|..+ ... ...++.+.. +-.+++-.+++.+..++..++. +++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 34445555554 45567888888866666 211 124566666 5556789999999999988864 222
Q ss_pred hHHHhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 008835 342 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 421 (551)
..++.+...+.+++..+|..|...+.--+.... ......-+++.|-.+..+++.=+++..+++|..++...
T Consensus 139 -------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~--~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 -------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY--FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT--TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch--hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 256788889999999999988876543221110 00001134555666666677788999999999999876
Q ss_pred ChHH
Q 008835 422 GNKA 425 (551)
Q Consensus 422 ~~~~ 425 (551)
+...
T Consensus 210 Pd~V 213 (240)
T 3l9t_A 210 PDLV 213 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 207
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.63 E-value=8.2 Score=33.45 Aligned_cols=72 Identities=8% Similarity=0.084 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLS 336 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs 336 (551)
..++..|...|++.++.+|..|+..|-.+.+.. ......+....++..|++++.. .++.++..++..+..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999864 4455567777788888888876 57889998888776654
No 208
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=75.05 E-value=60 Score=37.68 Aligned_cols=214 Identities=10% Similarity=0.018 Sum_probs=117.0
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHhcccC-----
Q 008835 268 IDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL--SSTDPRTQEHAVTALLNLSIN----- 338 (551)
Q Consensus 268 i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~nLs~~----- 338 (551)
+..++..+.++ +.+.+.+|-..|..+-... .+.+.+...| .+.+..+|..|+..|.|....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 33344333343 6667888888887775432 2334444434 345788999999999887532
Q ss_pred -CCchHHHhhcCCcHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChhHHHHH
Q 008835 339 -DSNKGTIVNAGAIPDIVDVLKN-------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDA 410 (551)
Q Consensus 339 -~~~~~~i~~~g~i~~Lv~~L~~-------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a 410 (551)
++.|..| . ..++..+.+ ....++...+.++..++..+-.. ...+.++.|+.++.+ +......+
T Consensus 83 ~~e~k~~I-r----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~ 153 (1204)
T 3a6p_A 83 SRLEKVYL-K----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELV 153 (1204)
T ss_dssp CHHHHHHH-H----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHH
T ss_pred CHHHHHHH-H----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHH
Confidence 1223222 2 234444332 34677777888887776443110 124788999998876 44556777
Q ss_pred HHHHHHhccC---C----ChHHH-----HHHc--CChHHHHHhhcc-------------------CChhhHHHHHHHHHH
Q 008835 411 ATAIFNLSIY---Q----GNKAR-----AVRA--GIVPPLMRFLKD-------------------AGGGMVDEALAILAI 457 (551)
Q Consensus 411 ~~aL~nL~~~---~----~~~~~-----l~~~--g~i~~Lv~lL~~-------------------~~~~~~~~al~~L~n 457 (551)
+.+|..|+.. . ..+.. +.+. .++..+..++.+ .+..++..++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 8888777532 1 11211 1111 122333333322 112344555555554
Q ss_pred HhcChhhHHHhhhCC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 008835 458 LASHQEGKTAIGQAE--PIPVLMEVIRTGSPRNRENAAAVLWAICTGD 503 (551)
Q Consensus 458 L~~~~~~~~~i~~~~--~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~ 503 (551)
....... ..+.+.. .++.+..++. ++.++..|+.+|..++...
T Consensus 234 ~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 234 YIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 4432211 2222322 5566665544 5778999999999998755
No 209
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=74.93 E-value=9.8 Score=32.37 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~nLs~ 337 (551)
..++..+...|++.++.+|..|+..|-.+.+.. ......++...++.-|++++.. .+..++..++..+..-+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999874 4456677778899999999874 378899988888876653
No 210
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=73.14 E-value=2.6 Score=32.39 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=38.7
Q ss_pred CCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCC
Q 008835 169 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 222 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~ 222 (551)
..-..+-|--|....+ -.+....|-+|..|+..-+.. ...||.|+.++....
T Consensus 24 s~~G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKL 75 (99)
T ss_dssp CCSCCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCS
T ss_pred cccCcccChhhccccC-CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcce
Confidence 3445678888887655 344556688899999988774 566999999997653
No 211
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.55 E-value=12 Score=32.50 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=55.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhh-CChHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~l~~ 543 (551)
++..|.+-|.++++.++..|+.+|-.+..+. ......+....++..|+.++.. .++.++.++..+++.-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4567777888899999999999988888764 5556677777888888888875 468999999888876654
No 212
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=71.28 E-value=9.6 Score=32.06 Aligned_cols=72 Identities=7% Similarity=0.104 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS 336 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs 336 (551)
..++..+...|.+.++.+|..|+..|-.+.+... .....+....++..|++++...++.++...+..+..-+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999988887643 33445656677888888887788899999988887665
No 213
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.68 E-value=11 Score=33.02 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~nLs~ 337 (551)
..++..|...|++.++.+|..|+..|-.+.+.+. .....+....++.-|++++.. .+..++..++..+..-+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999998753 455667777889999999863 367899999888877653
No 214
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=70.53 E-value=6.9 Score=28.98 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCCcccccccccCcCCeecc----CcccccHHHHHHHHHh
Q 008835 170 IPDDFRCPISLELMKDPVIVS----TGQTYERSCIQKWLDA 206 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~----cgh~~~~~ci~~~~~~ 206 (551)
....++|.+|.+-+.|.-.+. -+|.||-.|-...++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 346689999999999876543 4699999999888874
No 215
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=70.23 E-value=0.89 Score=28.10 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=13.5
Q ss_pred CCcccccccccCcCCee
Q 008835 172 DDFRCPISLELMKDPVI 188 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~ 188 (551)
+.|.||+|+..+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 46999999998887744
No 216
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=68.48 E-value=14 Score=30.97 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=56.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~~ 543 (551)
++..|.+-|.++++.++..|+.+|-.+..+. ......+.....+..|..++...++.++.++..++.....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4667777888899999999998888877665 3445566666788888888888889999999999887654
No 217
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=65.98 E-value=13 Score=31.65 Aligned_cols=71 Identities=14% Similarity=0.003 Sum_probs=56.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhh------CChHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~------~~~~~k~~A~~lL~~l~~ 543 (551)
++..|.+-|.++++.++..|+.+|-.+..+. ......+....++..|+.++.. .++.++.++..+++.-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4667788888999999999999998888764 5566777778889999988863 367899998888876654
No 218
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.67 E-value=12 Score=32.62 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=56.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhh------CChHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~------~~~~~k~~A~~lL~~l~~ 543 (551)
++..|.+-|.++++.++..|+.+|-.+..+.+ .....+.+..++..|+.++.. .+..++.++..+++.-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46678888889999999999999998888754 455567777889999998852 367999999988887654
No 219
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=63.12 E-value=26 Score=29.74 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChh-hHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~nLs~ 337 (551)
..++..|...|.+.++.+|..|+..|-.+.+.... ....+....++.-|++++.. .++.++...+..+..-+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999886543 34566677788899999964 478899998888877653
No 220
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=62.96 E-value=4.7 Score=29.87 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=32.5
Q ss_pred cccccccccCcC--Ce--eccCcc----cccHHHHHHHHHhCCCCCCCCcccccCCCCccch
Q 008835 174 FRCPISLELMKD--PV--IVSTGQ----TYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNY 227 (551)
Q Consensus 174 ~~Cpic~~~~~~--Pv--~~~cgh----~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~ 227 (551)
-.||||+..+.= -+ .++-+. --+|.-+-.-+.+-.+.||.|+..+.-..+..+.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRRE 70 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHH
Confidence 469999876531 00 111111 1245555666666678899999988776665443
No 221
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=62.70 E-value=2.2e+02 Score=32.84 Aligned_cols=248 Identities=10% Similarity=0.050 Sum_probs=132.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhh-----ChhhHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHhcccC--CCchHHH
Q 008835 276 ANGNVEEQRAAAGELRLLAKR-----NADNRVCIAEAGAIPLLVELLSS---TDPRTQEHAVTALLNLSIN--DSNKGTI 345 (551)
Q Consensus 276 ~s~~~~~~~~a~~~L~~L~~~-----~~~~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~nLs~~--~~~~~~i 345 (551)
.+.++.++.-|+..|.+..+. +++.|..|.+ ..+..+...-.. ....++.....++..++.. +..
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---- 131 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---- 131 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----
Confidence 355788888899899887654 3344444442 233333332111 3577888888888888753 222
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHhcCC----c---chhH-----Hhhhh--CcHHHHHHHhcc----------
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI----D---ENKV-----AIGAA--GAIPALIRLLCD---------- 401 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~----~---~~~~-----~i~~~--~~i~~Lv~lL~~---------- 401 (551)
-.+.++.|+..+.+ ++...+.+..+|..|+.. . ..+. .+... .+++.+..++.+
T Consensus 132 -Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 132 -WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp -CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 25678888888876 455677788888877532 0 1111 11111 233444444432
Q ss_pred ---------CChhHHHHHHHHHHHhccCCChHHHHHHcC--ChHHHHHhhccCChhhHHHHHHHHHHHhcCh---hhHHH
Q 008835 402 ---------GTPRGKKDAATAIFNLSIYQGNKARAVRAG--IVPPLMRFLKDAGGGMVDEALAILAILASHQ---EGKTA 467 (551)
Q Consensus 402 ---------~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g--~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~~---~~~~~ 467 (551)
++..+...++.++.+....-+. ..+.+.. .++.+..++. ++.++..|+.+|..+.... +.+..
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~ 286 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKP 286 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGG
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHH
Confidence 1223455666666655443221 1233332 5666666655 5778899999999998743 33333
Q ss_pred hhhC---CCHHHHHHHHhc--------CCHHHHHHHHHHHHHHhcCCHHHHHHHHH----------cCcHHHHHHHhhhC
Q 008835 468 IGQA---EPIPVLMEVIRT--------GSPRNRENAAAVLWAICTGDAEQLKIARE----------LDAEEALKELSESG 526 (551)
Q Consensus 468 i~~~---~~v~~L~~lL~~--------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~----------~g~i~~L~~ll~~~ 526 (551)
++.. ..+..++..+.. .+.+..+.-+.++..++. .....+.+ .++++.++.+..+.
T Consensus 287 li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 287 LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSNFGKYLESFLAFTTHP 363 (1204)
T ss_dssp GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhHHHHHHHHHHHHHhCc
Confidence 3321 113344454421 113344455556666552 12221111 13466666666666
Q ss_pred ChHHHHHHHH
Q 008835 527 TDRAKRKAGS 536 (551)
Q Consensus 527 ~~~~k~~A~~ 536 (551)
+..+...+..
T Consensus 364 ~~~vs~~~l~ 373 (1204)
T 3a6p_A 364 SQFLRSSTQM 373 (1204)
T ss_dssp CHHHHHHHHH
T ss_pred cHHhHHHHHH
Confidence 6555555444
No 222
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=60.50 E-value=4.7 Score=33.03 Aligned_cols=51 Identities=8% Similarity=0.050 Sum_probs=39.3
Q ss_pred CCcccccccccCcC---CeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCCC
Q 008835 172 DDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 223 (551)
Q Consensus 172 ~~~~Cpic~~~~~~---Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~~ 223 (551)
+-|.|..|...+.+ +....-|..||..|..+.+.. ...|..|++++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 45999999999963 456778999999999887742 2269999988875443
No 223
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=59.80 E-value=3.8 Score=31.75 Aligned_cols=13 Identities=23% Similarity=0.917 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHh
Q 008835 194 TYERSCIQKWLDA 206 (551)
Q Consensus 194 ~~~~~ci~~~~~~ 206 (551)
-|||+|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999985
No 224
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=59.56 E-value=2.4 Score=24.90 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=11.8
Q ss_pred CCcccccccccCcCC
Q 008835 172 DDFRCPISLELMKDP 186 (551)
Q Consensus 172 ~~~~Cpic~~~~~~P 186 (551)
..|.||+|...|-|+
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 467888888888776
No 225
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=59.07 E-value=4 Score=31.58 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=11.5
Q ss_pred cccHHHHHHHHHh
Q 008835 194 TYERSCIQKWLDA 206 (551)
Q Consensus 194 ~~~~~ci~~~~~~ 206 (551)
-|||+|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999984
No 226
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=58.16 E-value=11 Score=31.77 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=51.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHc-CcHHHHHHHhh-----hC---ChHHHHHHHHHHHHHH
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIAREL-DAEEALKELSE-----SG---TDRAKRKAGSILELLQ 542 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~-g~i~~L~~ll~-----~~---~~~~k~~A~~lL~~l~ 542 (551)
....|.+-|...++.++-.|+.+|-.||.++ +..+..+.+. ..|..+.++-. .| ...++.+|.+++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 4566777778888999999999999999766 4445555544 33444444321 22 2678999999999987
Q ss_pred hHHH
Q 008835 543 RIDM 546 (551)
Q Consensus 543 ~~~~ 546 (551)
..+.
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 5443
No 227
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=57.80 E-value=28 Score=29.55 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=56.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhh------CChHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~------~~~~~k~~A~~lL~~l~~ 543 (551)
++..|.+-|.++++.++..|+.+|-.+..+.+ .....+....++..|+.++.. .++.++.++..+++.-..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 56678888888999999999999988877654 445666677788889988853 478899999988887654
No 228
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=55.30 E-value=6.3 Score=32.31 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=37.5
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
++-|.|..|...+.. +....-|..||..|..+.+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 456999999998875 5567789999999987654 4679999998874
No 229
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=55.17 E-value=14 Score=34.55 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHhcccCCC-chHHHhhcCCcHHHHHHHhc
Q 008835 283 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LLSSTDPRTQEHAVTALLNLSINDS-NKGTIVNAGAIPDIVDVLKN 360 (551)
Q Consensus 283 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~~L~~ 360 (551)
+.-++..+|.+..+.+.+ +.+..++. .+.+.++..+.-+++++.|+..++. .+..+........+++.+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 344555556555443321 22333222 2334578899999999999998888 56666544334455554421
Q ss_pred --------CCHHHHHHHHHHHHHhcCCcch-hHHhhhhCcHHHHHHHhcc---------CChhHHHHHHHHHHHhccCCC
Q 008835 361 --------GSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLCD---------GTPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 361 --------~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~~~i~~Lv~lL~~---------~~~~~~~~a~~aL~nL~~~~~ 422 (551)
.+..++..++..++|+|..... +. .......+++.+.. .+.+....++.||.+|...++
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2445777888888999854211 11 12344556665552 366788888999999886443
No 230
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=53.38 E-value=18 Score=31.68 Aligned_cols=58 Identities=9% Similarity=0.131 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHhhccC
Q 008835 46 LDLSEEVREQIELVHVQFRRAKGRPDSPDLQLDHDLAVAQKERDPDPAILGRLSEKLH 103 (551)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~ 103 (551)
+++++|=++|+..++.+.+.........-.....++...+...+||.+.++.+++++.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~ 123 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEME 123 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6899999999999998877643322111112233444444456689998888887754
No 231
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.64 E-value=25 Score=31.99 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhcc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLS 336 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs 336 (551)
..++..|...|++.++.+|..|+..|-.+.+... .....++...++..|+.++.+ .+..++..++..+..-+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999998653 345566666788888888764 46788888887776654
No 232
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.88 E-value=26 Score=31.99 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHhccc
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI 337 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~ 337 (551)
..++..|...|.+.++.+|..|+..|-.+.+... .....++...++..|++++.. .++.+++.++..+...+.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999887533 345556666777788888754 478899998888877653
No 233
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.41 E-value=9.4 Score=35.72 Aligned_cols=130 Identities=8% Similarity=0.050 Sum_probs=72.5
Q ss_pred cCChhHHHHHHHHHHHhccCCC-hHHHHHHcCChHHHHHhhcc--------CChhhHHHHHHHHHHHhcChh-hHHHhhh
Q 008835 401 DGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKD--------AGGGMVDEALAILAILASHQE-GKTAIGQ 470 (551)
Q Consensus 401 ~~~~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~i~~Lv~lL~~--------~~~~~~~~al~~L~nL~~~~~-~~~~i~~ 470 (551)
+.++..+..++++++|+..++. ++..+.+......+++.+.+ .+..++-.+...+.|++..-. .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4466788899999999999888 56655544334444444422 234566677778888887311 110 1
Q ss_pred CCCHHHHHHHHhc---------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh-hh-CChHHHHHHHH
Q 008835 471 AEPIPVLMEVIRT---------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELS-ES-GTDRAKRKAGS 536 (551)
Q Consensus 471 ~~~v~~L~~lL~~---------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~-~~~~~k~~A~~ 536 (551)
......+++.+.. .+++....+..+|.+|...++...+.... +..+-... .. ..+|.+.-+..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~e 251 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDD 251 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTTT---CHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhcc---HHHHHHHHHHcccchHHHHHHHh
Confidence 2344566666652 24566666777777777544332222221 22222222 11 46677766554
No 234
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.68 E-value=28 Score=31.83 Aligned_cols=71 Identities=11% Similarity=0.104 Sum_probs=55.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~l~~ 543 (551)
++..|.+-|.++++.++..|+.+|-.+..+.+ .....+....++..|..++... ++.+++++..+++....
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46678888888999999999999888877553 3455666667788888887654 67899999988887654
No 235
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=50.63 E-value=46 Score=28.37 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-hhhHHHHHhcCCHHH-HHHhhcC---CCHHHHHHHHHHHHhcc
Q 008835 265 RAAIDALLGKLA-NGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPL-LVELLSS---TDPRTQEHAVTALLNLS 336 (551)
Q Consensus 265 ~~~i~~Lv~~L~-s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~nLs 336 (551)
..++..+...|+ +.++.+|..|+..|-.+.+.+ ......++...++.- |++++.. .+..+++.++..+..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 578999999998 588999999999999999875 455566777778887 7888853 34578888887776654
No 236
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.47 E-value=21 Score=25.54 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=27.9
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHHHHh
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLDA 206 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~~~ 206 (551)
++-|.|..|...+.. +....-|..||..|..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 456899999888754 355677889999999888864
No 237
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.11 E-value=40 Score=30.56 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=55.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHhhhC-ChHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~l~~ 543 (551)
++..|.+-|.++++.++..|+.+|-.+..+.+. ....+.+...+..|..++.+. +..++.++..+++.-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999998887654 445666667888888888765 57889888888776654
No 238
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=48.59 E-value=1.4e+02 Score=29.59 Aligned_cols=186 Identities=12% Similarity=0.091 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKR-NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 344 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 344 (551)
+.+-.|+...+....+.+...+..++.+..+ ++. .=..+++.++.+-.+.+.++|...+..|...+... ..
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~e 96 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IE 96 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GG
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HH
Confidence 3344444443332235788888888887653 232 22478899999999999999999999988776421 11
Q ss_pred HhhcCCcHHHHHHHhcCCHHHHHHHHHHHHHh--------cCCcch----hHHhhh-hCcHHHHHHHhccCChhHHHHHH
Q 008835 345 IVNAGAIPDIVDVLKNGSMEARENAAATLFSL--------SVIDEN----KVAIGA-AGAIPALIRLLCDGTPRGKKDAA 411 (551)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~L--------s~~~~~----~~~i~~-~~~i~~Lv~lL~~~~~~~~~~a~ 411 (551)
+ -..+++.|..+|.+.++.+.+.+..+..++ +..+.. ...... ...-..++.++.+++..++..++
T Consensus 97 l-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 97 L-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 1 134577888888888888877666555443 111111 011111 13344566677888888999998
Q ss_pred HHHHHhcc--CC---C------------------hH-----HHHH--HcCChHHHHHhhcc--CChhhHHHHHHHHHHHh
Q 008835 412 TAIFNLSI--YQ---G------------------NK-----ARAV--RAGIVPPLMRFLKD--AGGGMVDEALAILAILA 459 (551)
Q Consensus 412 ~aL~nL~~--~~---~------------------~~-----~~l~--~~g~i~~Lv~lL~~--~~~~~~~~al~~L~nL~ 459 (551)
+.+-.+.. .+ + +. ..+- ..+.+..|+.++.. .++.....++..|.+|+
T Consensus 176 KFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Ia 255 (386)
T 3o2t_A 176 KFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIA 255 (386)
T ss_dssp HHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 88776531 10 0 11 1222 23567788888865 23334555666677776
Q ss_pred c
Q 008835 460 S 460 (551)
Q Consensus 460 ~ 460 (551)
.
T Consensus 256 k 256 (386)
T 3o2t_A 256 R 256 (386)
T ss_dssp H
T ss_pred H
Confidence 6
No 239
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=48.35 E-value=90 Score=30.97 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=74.5
Q ss_pred hCcHHHHHHHhccCChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh--------c
Q 008835 389 AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA--------S 460 (551)
Q Consensus 389 ~~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~--------~ 460 (551)
.++++.++.+-.+.+.++++..+..|...+...... + ..+++.|..+|.+.++.+...++.+..++- .
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el---~-~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL---L-LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG---H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999988889999999999998887532111 1 345777888888888888887777666553 2
Q ss_pred Chhh---HHHhhh--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008835 461 HQEG---KTAIGQ--AEPIPVLMEVIRTGSPRNRENAAAVLWAIC 500 (551)
Q Consensus 461 ~~~~---~~~i~~--~~~v~~L~~lL~~~~~~~k~~A~~~L~~L~ 500 (551)
++.. ....++ ..+-..++.++.+++..+|-.|++.+-.+.
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 2221 122222 133456666778888999999998887643
No 240
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=48.23 E-value=15 Score=30.20 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=38.6
Q ss_pred CCCcccccccccCc---CCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~---~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
++-|.|..|...+. .+....-|..||..|..+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 56799999999885 3667788999999998887631 1269999988864
No 241
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=47.41 E-value=32 Score=39.35 Aligned_cols=139 Identities=8% Similarity=0.026 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHHHhhChh--hHHHHHhcCCHHHHHHhhcCC---C--HHHHHHHHHHHHhcccCCCchHHHhhcCC
Q 008835 278 GNVEEQRAAAGELRLLAKRNAD--NRVCIAEAGAIPLLVELLSST---D--PRTQEHAVTALLNLSINDSNKGTIVNAGA 350 (551)
Q Consensus 278 ~~~~~~~~a~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~~~---~--~~~~~~a~~~L~nLs~~~~~~~~i~~~g~ 350 (551)
.+|...+.++++++.++..-.. -+..+. .+++.|+.+.... + ..++...+++++..+.--.....+. ..+
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~~v 567 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-KTV 567 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-HHH
Confidence 3589999999999999864332 223333 4567777766543 1 2234444567766543110111111 234
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhh--C----cHHHHHHHhcc----CChhHHHHHHHHHHHhccC
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--G----AIPALIRLLCD----GTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--~----~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~ 420 (551)
+..|++.+...++.++..|+.++..++.. .+..++.. | .+..++..+.+ -.++-...-..+++.+...
T Consensus 568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~--C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 568 VNKLFEFMHETHDGVQDMACDTFIKIAQK--CRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHTTCCSTTHHHHHHHHHHHHHHH--TGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH--HHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 56666777777889999999999999743 33333321 1 33444433222 2344444555556665554
Q ss_pred C
Q 008835 421 Q 421 (551)
Q Consensus 421 ~ 421 (551)
.
T Consensus 646 ~ 646 (1073)
T 3gjx_A 646 Q 646 (1073)
T ss_dssp C
T ss_pred C
Confidence 3
No 242
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=47.02 E-value=23 Score=30.56 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=37.0
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
++-|.|..|...+.+.....-|..||..|..+-+. ..|..|+.++...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 46799999999887654567889999999887663 4688888777543
No 243
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=45.04 E-value=39 Score=33.97 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=66.9
Q ss_pred hcCCCHHHHHHHHHHHHhcccCCCchHHHh-hcCCcHHHHHHHhc--------CCHHHHHHHHHHHHHhcCCcch-hHHh
Q 008835 317 LSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKN--------GSMEARENAAATLFSLSVIDEN-KVAI 386 (551)
Q Consensus 317 L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~--------~~~~~~~~aa~~L~~Ls~~~~~-~~~i 386 (551)
+.+..+..+..+++++.|+..++.....++ .......+++.+.. .+..++..++.+++|+|..... +.
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~-- 348 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 348 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS--
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 334578899999999999988887544444 33234555555421 1345777888888999864211 10
Q ss_pred hhhCcHHHHHHHhc---------cCChhHHHHHHHHHHHhccCCC
Q 008835 387 GAAGAIPALIRLLC---------DGTPRGKKDAATAIFNLSIYQG 422 (551)
Q Consensus 387 ~~~~~i~~Lv~lL~---------~~~~~~~~~a~~aL~nL~~~~~ 422 (551)
.......++..+. ..+.+....++.||.+|....+
T Consensus 349 -~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 349 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp -CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred -hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 1234456666665 2477888999999999986443
No 244
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=44.88 E-value=23 Score=31.05 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=34.6
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
++-|.|..|...+.+.....-|..||..|..+-+ ...|..|+.++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 4568888888877654445678889999876543 45799998877643
No 245
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=44.15 E-value=7.3 Score=34.59 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=38.2
Q ss_pred CCCcccccccccCcC---CeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~---Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
++-|.|..|...+.+ +....-|..||..|..+-+.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 466999999998874 667788999999998877641 1169999988764
No 246
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=43.17 E-value=7.6 Score=25.76 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=11.9
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|..
T Consensus 25 ~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 25 DQLPDDWCCPVCGV 38 (46)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCcCCCC
Confidence 36899999999974
No 247
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=43.13 E-value=1.5e+02 Score=29.73 Aligned_cols=132 Identities=7% Similarity=0.037 Sum_probs=76.0
Q ss_pred cCChhHHHHHHHHHHHhccCCChHHHHHHc-CChHHHHHhhcc--------CChhhHHHHHHHHHHHhcChhh-HHHhhh
Q 008835 401 DGTPRGKKDAATAIFNLSIYQGNKARAVRA-GIVPPLMRFLKD--------AGGGMVDEALAILAILASHQEG-KTAIGQ 470 (551)
Q Consensus 401 ~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~-g~i~~Lv~lL~~--------~~~~~~~~al~~L~nL~~~~~~-~~~i~~ 470 (551)
+.++..+..++++++|+..++.....++.. .....+++.+.. .+..++-.+..++.|++..-.. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 456778889999999999988754444433 234555555532 1334566667777888873211 10 1
Q ss_pred CCCHHHHHHHHh---------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHH
Q 008835 471 AEPIPVLMEVIR---------TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGS 536 (551)
Q Consensus 471 ~~~v~~L~~lL~---------~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~ 536 (551)
...+..+++.+. ..+++..-.++-+|.+|...++...........+....... ...+|.+.-+..
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~~~~~~~~~~~~-~~e~R~~~v~~e 423 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSY-GNVPRFKDIFDD 423 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHH-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHHHHHhc-ccchHHHHHHHh
Confidence 234456666666 23667777788888888876655444443322222222111 136677665544
No 248
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=43.10 E-value=2.1e+02 Score=26.53 Aligned_cols=144 Identities=8% Similarity=0.031 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHhcccCCCchHHH
Q 008835 266 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 345 (551)
Q Consensus 266 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 345 (551)
+.+-.|+...+....+.+...+...+.+.-+++. ..+ ..+++.++.+-.+.+.++|...+..+...+.... -
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp--~ll--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~ 86 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCA--ELA--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----E 86 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTG--GGH--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----G
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCH--hHH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----H
Confidence 4444555555554447888889999987765321 122 2457788887777889999999988887763211 1
Q ss_pred hhcCCcHHHHHHHhcCCHHHHHHHHHHHHHh--------cCCcch----hHHhhh-hCcHHHHHHHhccCChhHHHHHHH
Q 008835 346 VNAGAIPDIVDVLKNGSMEARENAAATLFSL--------SVIDEN----KVAIGA-AGAIPALIRLLCDGTPRGKKDAAT 412 (551)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~L--------s~~~~~----~~~i~~-~~~i~~Lv~lL~~~~~~~~~~a~~ 412 (551)
.....++.|..+|++.++.+.+.+..+..++ +..+.. ...... ...=..++.++.+++..++..+++
T Consensus 87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK 166 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK 166 (257)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence 1234577788888877888777666554443 222211 001111 122234445555566666666666
Q ss_pred HHHHh
Q 008835 413 AIFNL 417 (551)
Q Consensus 413 aL~nL 417 (551)
.+..+
T Consensus 167 F~e~v 171 (257)
T 3gs3_A 167 FLEGV 171 (257)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 249
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=42.84 E-value=2.1e+02 Score=26.51 Aligned_cols=130 Identities=11% Similarity=0.094 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHhhhCCCHHHHHHHHhc
Q 008835 405 RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRT 483 (551)
Q Consensus 405 ~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~-~~~~~~i~~~~~v~~L~~lL~~ 483 (551)
+.+...+.-...|..+.+.. .-..+++.++++..+.+.+++.-.+..+...+.. ++ ....+++.|..+|.+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~---ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-----l~~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE---LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-----LLPHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHh---HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcC
Confidence 45555555555655543221 1133455566665556667777777777666631 11 112356677777776
Q ss_pred CCHHHHHHHHHHHHHHh--------cCCH--HHHHHHHHc--CcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 484 GSPRNRENAAAVLWAIC--------TGDA--EQLKIAREL--DAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 484 ~~~~~k~~A~~~L~~L~--------~~~~--~~~~~~~~~--g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.++.+...++.+..++- .++. ......++. .+-..++.+..+++..+|-.|.+.++.+-
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 67777666665544432 2221 122333332 23445666778888999988888888764
No 250
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=41.12 E-value=43 Score=32.93 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHhcccCCCchHHHh-hcCCcHHHHHHHhc
Q 008835 283 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLV-ELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKN 360 (551)
Q Consensus 283 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~ 360 (551)
+.-++..||.+..+.+.. +.+..++ ..+.+..+..+..+++++.|+-.++.....++ .......+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 444666666666543321 2233333 23335578899999999999988887444444 22223444544421
Q ss_pred --------CCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhc---------cCChhHHHHHHHHHHHhccCC
Q 008835 361 --------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---------DGTPRGKKDAATAIFNLSIYQ 421 (551)
Q Consensus 361 --------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~---------~~~~~~~~~a~~aL~nL~~~~ 421 (551)
.+..++..++..++|+|....... ........+++.+. ..+.+....++.||.+|...+
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~--~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC--SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 134577788888899986421100 01234456666665 247788899999999998643
No 251
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=39.66 E-value=29 Score=27.00 Aligned_cols=51 Identities=20% Similarity=0.468 Sum_probs=38.9
Q ss_pred CCCCcccccccccCcCCeecc--Cc----ccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 170 IPDDFRCPISLELMKDPVIVS--TG----QTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~--cg----h~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
+++.++|||+++....-|.+. -| .-|+...+.+....|.. =|.+|.+++..
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~-HPLSREpit~s 80 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLP-HPLTREPITAS 80 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCC-CTTTCCCCCTT
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCC-CCCccCCCCHh
Confidence 457789999999999998763 11 25999999998887543 58888887654
No 252
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=39.54 E-value=11 Score=25.70 Aligned_cols=15 Identities=33% Similarity=0.766 Sum_probs=12.5
Q ss_pred CCCCCCCcccccccc
Q 008835 167 SPVIPDDFRCPISLE 181 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~ 181 (551)
-..+|+++.||+|..
T Consensus 30 f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 30 FEDLPDDWACPVCGA 44 (52)
T ss_dssp TTSSCTTCCCSSSCC
T ss_pred hHHCCCCCcCCCCCC
Confidence 346899999999975
No 253
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.39 E-value=0.9 Score=35.14 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=25.9
Q ss_pred cccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 174 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
..||.|...|.- .-|+.+|..|-..+. ....||.|++++..
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~--~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIE--MKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEE--EEEECTTTCSBCEE
T ss_pred ccCccCCCccee----cCCEEECccccchhh--ccccCcchhhHHHH
Confidence 789999987752 224444777633211 13469999988853
No 254
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.35 E-value=26 Score=25.50 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=33.7
Q ss_pred CCCcccccccccCcC-CeeccCcccccH-HHHHHHHHhCCCCCCCCcccc
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYER-SCIQKWLDAGHKTCPKTQQTL 218 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~-~ci~~~~~~~~~~CP~c~~~l 218 (551)
++-|.|..|...+.+ +....-|..||. .|..+.+ ...|..|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCce
Confidence 467999999988876 566778899999 5987654 34588887544
No 255
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=37.60 E-value=10 Score=26.08 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=12.1
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|..
T Consensus 31 e~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 31 KDIPDDWVCPLCGV 44 (54)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCcCCCC
Confidence 47899999999975
No 256
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.33 E-value=25 Score=25.04 Aligned_cols=35 Identities=26% Similarity=0.569 Sum_probs=23.3
Q ss_pred CCCcccccccccCcCC-eeccCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P-v~~~cgh~~~~~ci~~~~~ 205 (551)
++-|.|..|...+.+- ....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 4557888887776653 3345677788888776654
No 257
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=35.86 E-value=1.2e+02 Score=29.78 Aligned_cols=132 Identities=7% Similarity=0.041 Sum_probs=74.0
Q ss_pred cCChhHHHHHHHHHHHhccCCChHHHHHHcC-ChHHHHHhhcc--------CChhhHHHHHHHHHHHhcChhh-HHHhhh
Q 008835 401 DGTPRGKKDAATAIFNLSIYQGNKARAVRAG-IVPPLMRFLKD--------AGGGMVDEALAILAILASHQEG-KTAIGQ 470 (551)
Q Consensus 401 ~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g-~i~~Lv~lL~~--------~~~~~~~~al~~L~nL~~~~~~-~~~i~~ 470 (551)
+..+..+..++++++|+..++.....++... ....+++.+.. .+..++-.+..++.|++..-.. +. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4567788899999999999887444444322 23334443321 2344566667777888873211 10 1
Q ss_pred CCCHHHHHHHHh---------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHH
Q 008835 471 AEPIPVLMEVIR---------TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGS 536 (551)
Q Consensus 471 ~~~v~~L~~lL~---------~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~ 536 (551)
...+..+++.+. ..+++..-.++-+|.+|...++...........+....... ...+|.+.-+..
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~~~~~~~~~~~~~-~~e~R~~~v~~e 360 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSY-GNVPRFKDIFDD 360 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGGGCHHHHHHHHHH-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHHHHHhc-ccchHHHHHHHh
Confidence 234456777666 24667777788888888876654443333222222222111 136676665543
No 258
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.34 E-value=25 Score=27.13 Aligned_cols=47 Identities=13% Similarity=0.336 Sum_probs=35.5
Q ss_pred CCCcccccccccCcCC-eeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P-v~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
++-|.|..|...+.+. ....-|..||..|..+. ....|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCcccc
Confidence 4569999999888654 45678899999997543 34579999988863
No 259
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.05 E-value=87 Score=26.61 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=52.8
Q ss_pred CHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHH-HHHHhhh-C--ChHHHHHHHHHHHHHHh
Q 008835 473 PIPVLMEVIR-TGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEA-LKELSES-G--TDRAKRKAGSILELLQR 543 (551)
Q Consensus 473 ~v~~L~~lL~-~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~-L~~ll~~-~--~~~~k~~A~~lL~~l~~ 543 (551)
++..|.+-|+ ++++.++..|+.+|-.+..+. +.....+.+..++.. |+.++.. + ...+++++..+++.-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4567777786 478999999999998888765 555566777778887 7887742 2 35889988888877654
No 260
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.04 E-value=22 Score=28.99 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.9
Q ss_pred CcccccccccCcCCe-eccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 173 DFRCPISLELMKDPV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv-~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
...|+-|.+...+.. +..-|..|...| +.|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 458999998887763 667787777766 56888888875
No 261
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.43 E-value=14 Score=27.71 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=12.2
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|.-
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 46899999999975
No 262
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.20 E-value=32 Score=24.40 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHHH
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWL 204 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~ 204 (551)
++-|.|..|...+.+ +....-|..||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 456888888887754 4445677888888876654
No 263
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.03 E-value=13 Score=25.25 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=12.1
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|..
T Consensus 30 ~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 30 EDLPDDWVCPLCGA 43 (52)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 36899999999975
No 264
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.00 E-value=21 Score=25.87 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCCcccccccccCc--CCeeccCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMK--DPVIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~--~Pv~~~cgh~~~~~ci~~~~~ 205 (551)
++-|.|..|...+. +.....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 45588888887776 445556677888888765544
No 265
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.33 E-value=14 Score=25.54 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=12.0
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|..
T Consensus 31 ~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 31 EDIPADWVCPDCGV 44 (55)
T ss_dssp GGSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 36899999999975
No 266
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.29 E-value=32 Score=25.96 Aligned_cols=37 Identities=16% Similarity=0.461 Sum_probs=20.1
Q ss_pred ccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 175 RCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 175 ~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
.|+-|.+...+.++..-|..|...| +.|-.|+.+|..
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCccCCCEecceEEEECCccccccC---------CccCCCCCCCCC
Confidence 4666665555555555555555443 445555555543
No 267
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.53 E-value=41 Score=24.59 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=28.0
Q ss_pred CCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
.+..-.|+-|.+...+.++..-|..|...| +.|-.|+.+|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCCCCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCC
Confidence 344567888888777766667777665554 56777777665
No 268
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.40 E-value=16 Score=24.24 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=23.2
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
.|.|++|...+.....+. .-+...-......||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~~l~-------~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-------IHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-------HHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHHH-------HHHHHcCCCCCcCCCCCcchhCC
Confidence 578999988887652221 11111111234679999877643
No 269
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.18 E-value=26 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=19.8
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHH
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKW 203 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~ 203 (551)
++-|.|..|...+.+ +....-|..||..|..+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred cCcCEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 345777777766543 334556667777776543
No 270
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.03 E-value=44 Score=23.55 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~~ 205 (551)
++-|.|..|...+.. .....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 456889999887754 34566788899999877664
No 271
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.35 E-value=12 Score=20.98 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=9.6
Q ss_pred CcccccccccCcC
Q 008835 173 DFRCPISLELMKD 185 (551)
Q Consensus 173 ~~~Cpic~~~~~~ 185 (551)
...||+|.+.|--
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 3479999988753
No 272
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=30.21 E-value=1.4e+02 Score=26.49 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=71.4
Q ss_pred CcHHHHHHHhcc------CChhHHHHHHHHHHHhccCCChHHHHHHcCChHHHHHhhcc---CChhhHHHHHHHHHHHhc
Q 008835 390 GAIPALIRLLCD------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD---AGGGMVDEALAILAILAS 460 (551)
Q Consensus 390 ~~i~~Lv~lL~~------~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~i~~Lv~lL~~---~~~~~~~~al~~L~nL~~ 460 (551)
..+|.++..+.+ .+.......+.....|..++.-.....-+-.+|.++.++-. +...+++.|..+|..++.
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 466777766654 24555566677777777666543332233467777777643 333799999999999987
Q ss_pred ChhhHHHhhhCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh
Q 008835 461 HQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE 524 (551)
Q Consensus 461 ~~~~~~~i~~~~~v~~L~~lL~~~--~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 524 (551)
.-.....-.....+..+.+.+.++ +....--|+..|..+.. + +++.-++|.|-.+.+
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~---~----~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK---N----VVNTVIREHAEEYKR 178 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH---H----HHHTHHHHHHHHHHH
T ss_pred HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH---H----HHHHhhhcCHHHHHH
Confidence 421111111223445566655543 34455556666655543 2 333434566655553
No 273
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=30.09 E-value=7.5 Score=23.38 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=18.4
Q ss_pred ccCcccccHHHHHHHHHh--CCCCCCCCcc
Q 008835 189 VSTGQTYERSCIQKWLDA--GHKTCPKTQQ 216 (551)
Q Consensus 189 ~~cgh~~~~~ci~~~~~~--~~~~CP~c~~ 216 (551)
.+|.||.|..|--..+-. |..+.|.|+.
T Consensus 10 ascehtmcgycqgplymtcigittdpecgl 39 (40)
T 1erd_A 10 ASCEHTMCGYCQGPLYMTCIGITTDPECGL 39 (40)
T ss_dssp HHTCGGGGGGSCHHHHHHHHHHHTCTTTTC
T ss_pred HhccccccccccCCeeEEEEeeccCCCCCC
Confidence 479999988886554432 4456677763
No 274
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.23 E-value=17 Score=26.53 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=12.1
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|..
T Consensus 35 ~~lPddw~CP~Cga 48 (70)
T 1dx8_A 35 VDLSDSFMCPACRS 48 (70)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCCCCCC
Confidence 46899999999975
No 275
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.87 E-value=50 Score=24.19 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=23.8
Q ss_pred CCCcccccccccCc--CCeec-cCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMK--DPVIV-STGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~--~Pv~~-~cgh~~~~~ci~~~~~ 205 (551)
++-|.|..|...+. ++..+ .-|..||..|..+.+.
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 45578888887774 34443 6677888888776664
No 276
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.79 E-value=2.7 Score=31.63 Aligned_cols=41 Identities=17% Similarity=0.490 Sum_probs=21.1
Q ss_pred cccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccC
Q 008835 174 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 220 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~ 220 (551)
..||.|...|.- .-++.+|..|=... .. ...||.|++++..
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~-~~-~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDF-SL-QALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEE-EE-EEECSSSCSCCCE
T ss_pred CCCCCCCCcccc----CCCceECccccccC-CC-cccCcchhhHHHH
Confidence 568888876641 11233355542111 11 2268888877753
No 277
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.72 E-value=26 Score=25.98 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=11.1
Q ss_pred cccccccccCcCCeeccCcccccHHHHH
Q 008835 174 FRCPISLELMKDPVIVSTGQTYERSCIQ 201 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~~cgh~~~~~ci~ 201 (551)
|.|..|...+.+.....-|..||..|..
T Consensus 43 F~C~~C~~~L~~~~~~~~g~~yC~~~y~ 70 (80)
T 2dj7_A 43 FKCQTCSVILTGEYISKDGVPYCESDYH 70 (80)
T ss_dssp CBCSSSCCBCSSCCEEETTEEECTTHHH
T ss_pred CCcCcCCCCcCCCeEEECCEEECHHHHH
Confidence 4444444443332223334444444433
No 278
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.68 E-value=36 Score=29.99 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=28.7
Q ss_pred CCCcccccccccCcCC-eeccCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P-v~~~cgh~~~~~ci~~~~~ 205 (551)
++-|.|..|...+.+. ....-|..||..|..+-+.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 5679999999988764 4566789999999998875
No 279
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=28.33 E-value=25 Score=37.63 Aligned_cols=52 Identities=27% Similarity=0.616 Sum_probs=37.8
Q ss_pred CCCCCCCcccccccccCcCC--------ee--ccCcccc--------------------cHHHHHHHHHh-------CCC
Q 008835 167 SPVIPDDFRCPISLELMKDP--------VI--VSTGQTY--------------------ERSCIQKWLDA-------GHK 209 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~P--------v~--~~cgh~~--------------------~~~ci~~~~~~-------~~~ 209 (551)
...+|+--.||-|+.-|.|| .+ +.||-.| |..|-.++-+- ...
T Consensus 11 ~~i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~ 90 (657)
T 3ttc_A 11 TQIVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPV 90 (657)
T ss_dssp -CCCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTC
T ss_pred cccCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCC
Confidence 34567888999999887765 33 4677554 99999988763 234
Q ss_pred CCCCCcccc
Q 008835 210 TCPKTQQTL 218 (551)
Q Consensus 210 ~CP~c~~~l 218 (551)
.||.|+-.+
T Consensus 91 aCp~CGP~l 99 (657)
T 3ttc_A 91 ACPECGPYL 99 (657)
T ss_dssp CCTTTSCCE
T ss_pred cCcccCccc
Confidence 699999877
No 280
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.10 E-value=21 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=14.6
Q ss_pred CCcccccccccCcCCeeccCcccccHHHHH
Q 008835 172 DDFRCPISLELMKDPVIVSTGQTYERSCIQ 201 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~ 201 (551)
+-|.|..|...+.+-....-|..||..|..
T Consensus 40 ~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~ 69 (79)
T 2cor_A 40 DHFNCANCGKELTADARELKGELYCLPCHD 69 (79)
T ss_dssp TTSBCSSSCCBCCTTCEEETTEEECHHHHH
T ss_pred CCCEeCCCCCccCCCCEeECCEEeCHHHHH
Confidence 335555555555433233345555555543
No 281
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=28.09 E-value=37 Score=37.24 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=38.3
Q ss_pred CCCCCCcccccccccCcCCe--------e--ccCcccc--------------------cHHHHHHHHHh-------CCCC
Q 008835 168 PVIPDDFRCPISLELMKDPV--------I--VSTGQTY--------------------ERSCIQKWLDA-------GHKT 210 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv--------~--~~cgh~~--------------------~~~ci~~~~~~-------~~~~ 210 (551)
.-+|+--.||-|+.-|.||- + +.||-.| |..|-.++-+- ....
T Consensus 101 ~i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~a 180 (772)
T 4g9i_A 101 IIPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTA 180 (772)
T ss_dssp CCCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCC
T ss_pred ccCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCC
Confidence 34678889999998887653 3 4677554 99999988763 2346
Q ss_pred CCCCccccc
Q 008835 211 CPKTQQTLL 219 (551)
Q Consensus 211 CP~c~~~l~ 219 (551)
||.|+-.+.
T Consensus 181 C~~CGP~l~ 189 (772)
T 4g9i_A 181 CPVCGPSYR 189 (772)
T ss_dssp CTTTSCCEE
T ss_pred CccCCceEE
Confidence 999998764
No 282
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=27.89 E-value=51 Score=23.53 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCcccccccccCcCCeec--cCcccccHHHHHHHHHh---CCCCCCCCccc
Q 008835 172 DDFRCPISLELMKDPVIV--STGQTYERSCIQKWLDA---GHKTCPKTQQT 217 (551)
Q Consensus 172 ~~~~Cpic~~~~~~Pv~~--~cgh~~~~~ci~~~~~~---~~~~CP~c~~~ 217 (551)
..-.|.+|.+- .-++. .|...|...|+...+.. +...||.|...
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34569999863 23343 57889999998766553 66789999643
No 283
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=27.88 E-value=2.7e+02 Score=23.28 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=52.8
Q ss_pred HhccCCChHHHHHHcCChHHHHHhhcc------CChhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhc--CCHH
Q 008835 416 NLSIYQGNKARAVRAGIVPPLMRFLKD------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT--GSPR 487 (551)
Q Consensus 416 nL~~~~~~~~~l~~~g~i~~Lv~lL~~------~~~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~--~~~~ 487 (551)
.......-+..+++.|++..+-..|.- ++..++...+.+|.++- -.+..+.+.|.-..++-+-++ .++.
T Consensus 46 ~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~ 122 (145)
T 2xpp_A 46 DILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKE 122 (145)
T ss_dssp HHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHH
T ss_pred HHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHH
Confidence 333444556778999999999999864 45567888888888773 335556665444444444444 3477
Q ss_pred HHHHHHHHHHH
Q 008835 488 NRENAAAVLWA 498 (551)
Q Consensus 488 ~k~~A~~~L~~ 498 (551)
.|..|-.++..
T Consensus 123 nk~la~~Li~~ 133 (145)
T 2xpp_A 123 VRASAKALVQK 133 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777644
No 284
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.36 E-value=32 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=29.2
Q ss_pred CCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCC
Q 008835 170 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 221 (551)
Q Consensus 170 ~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~ 221 (551)
....-.|.-|.+...+.++..-|..|...| +.|-.|+..|...
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQK 64 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTTS
T ss_pred CCcCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCCC
Confidence 344457888888777766667777776665 5577777777643
No 285
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=27.17 E-value=4.4e+02 Score=26.85 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhccCChh---HHHHHHHHHHHhccCCChHHHH
Q 008835 351 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPR---GKKDAATAIFNLSIYQGNKARA 427 (551)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~---~~~~a~~aL~nL~~~~~~~~~l 427 (551)
++-++..|.++.+.+...|+.++. ....+..+...+.+..|++++-+.+.. +....=.++..|+.+.=.+.++
T Consensus 118 ve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrri 193 (500)
T 3vld_A 118 AEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRL 193 (500)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHH
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 008835 428 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 461 (551)
Q Consensus 428 ~~~g~i~~Lv~lL~~~~~~~~~~al~~L~nL~~~ 461 (551)
. ....+.|..+=.+.++.+..+.+..+..+...
T Consensus 194 l-~nnl~lL~~vK~~~~~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 194 F-DNNLPYLVSVKGRMETVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp H-TTTHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred H-HHhHHHHHHHhcCCCceeHHHHHHHHHHHhcc
No 286
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.96 E-value=21 Score=27.20 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=12.1
Q ss_pred CCCCCCcccccccc
Q 008835 168 PVIPDDFRCPISLE 181 (551)
Q Consensus 168 ~~~~~~~~Cpic~~ 181 (551)
..+|+++.||+|..
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 47899999999975
No 287
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=37 Score=25.61 Aligned_cols=35 Identities=23% Similarity=0.551 Sum_probs=27.5
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~~ 205 (551)
++-|.|..|...+.+ .....-|..||..|..+.+.
T Consensus 49 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 49 PEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp TTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred ccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC
Confidence 456999999988874 44567789999999887653
No 288
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.30 E-value=42 Score=23.85 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHHH
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWL 204 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~ 204 (551)
++-|.|..|...+.. +....-|..||..|..+.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 31 EHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp TTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred cccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 355888888877764 4445677788888876544
No 289
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=25.11 E-value=3e+02 Score=22.96 Aligned_cols=80 Identities=6% Similarity=-0.018 Sum_probs=59.7
Q ss_pred cChhhHHHhhhCCCHHHHHHHHhc---C---CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhC--ChHHH
Q 008835 460 SHQEGKTAIGQAEPIPVLMEVIRT---G---SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAK 531 (551)
Q Consensus 460 ~~~~~~~~i~~~~~v~~L~~lL~~---~---~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k 531 (551)
....-+..+++.|++..+-..|.- + +..+|.....+|..+--. ...+.+.|+-..++.+..+. ++..|
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~----~e~Lk~SglGkvv~~l~k~~~et~~nk 124 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH----KEHLVTSGVGKIVYFYSINPKESKEVR 124 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHCHHHHHHHHHHCTTSCHHHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC----HHHhhcCCCCcchhhhhcCCccCHHHH
Confidence 445567888899999999999863 3 367888888888887532 45577778777777776665 78999
Q ss_pred HHHHHHHHHHHh
Q 008835 532 RKAGSILELLQR 543 (551)
Q Consensus 532 ~~A~~lL~~l~~ 543 (551)
+.|..++..-.+
T Consensus 125 ~la~~Li~~WsR 136 (145)
T 2xpp_A 125 ASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876554
No 290
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.96 E-value=64 Score=25.56 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=29.7
Q ss_pred CCCcccccccccCcC---CeeccCcccccHHHHHHHHHh
Q 008835 171 PDDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDA 206 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~---Pv~~~cgh~~~~~ci~~~~~~ 206 (551)
++-|.|..|...+.+ +....-|..||..|..+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 467999999999974 566778999999999888763
No 291
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=24.85 E-value=36 Score=37.20 Aligned_cols=53 Identities=28% Similarity=0.441 Sum_probs=38.3
Q ss_pred CCCCCCCcccccccccCcCCe--------e--ccCccc--------------------ccHHHHHHHHHh-------CCC
Q 008835 167 SPVIPDDFRCPISLELMKDPV--------I--VSTGQT--------------------YERSCIQKWLDA-------GHK 209 (551)
Q Consensus 167 ~~~~~~~~~Cpic~~~~~~Pv--------~--~~cgh~--------------------~~~~ci~~~~~~-------~~~ 209 (551)
...+|+--.||-|+.-|.||- + +.||-. .|..|-.++-+- ...
T Consensus 105 ~~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~ 184 (761)
T 3vth_A 105 VPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPV 184 (761)
T ss_dssp CCCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTC
T ss_pred cccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCC
Confidence 345678889999998887753 3 467744 399999888663 234
Q ss_pred CCCCCccccc
Q 008835 210 TCPKTQQTLL 219 (551)
Q Consensus 210 ~CP~c~~~l~ 219 (551)
.||.|+-.+.
T Consensus 185 aC~~CGP~l~ 194 (761)
T 3vth_A 185 ACFDCGPSLS 194 (761)
T ss_dssp CCTTTSCCEE
T ss_pred cCCccCCeeE
Confidence 6999997764
No 292
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.49 E-value=1.4e+02 Score=19.27 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=24.7
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHH-----hCCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD-----AGHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~-----~~~~~CP~c~~~l~~ 220 (551)
...|.|++|...+..+ ..+..... .....|+.|+..+..
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 3458899988877653 33344432 134679999987653
No 293
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.13 E-value=36 Score=24.95 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=27.6
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~~ 205 (551)
++-|.|..|...+.+ +....-|..||..|..+.+.
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 39 PECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp TTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHS
T ss_pred cCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 456999999988864 44566789999999988775
No 294
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.07 E-value=81 Score=23.00 Aligned_cols=41 Identities=12% Similarity=0.344 Sum_probs=31.4
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCcccccCCC
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 222 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~~~~ 222 (551)
.-.|+-|.+...+.++..-|.+|...| ++|..|+.+|....
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~~ 55 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELTADA 55 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCCTTC
T ss_pred CCCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccCCCC
Confidence 457999998888877777787776554 67999998887553
No 295
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=23.85 E-value=45 Score=23.32 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=27.3
Q ss_pred ccccccccCcCCee---ccCcccccHHHHHHHHHhCCCCCCCC
Q 008835 175 RCPISLELMKDPVI---VSTGQTYERSCIQKWLDAGHKTCPKT 214 (551)
Q Consensus 175 ~Cpic~~~~~~Pv~---~~cgh~~~~~ci~~~~~~~~~~CP~c 214 (551)
.|--|...+.++-. ..|++.||-.| .....+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 37777777765542 47889999998 44444556779987
No 296
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=23.52 E-value=1.4e+02 Score=33.64 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=93.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhcccC-CCchHHHhhcCCcHHHHHHHhc----CCHHHHHHHHHHHHHhcCCcchhH
Q 008835 310 IPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKN----GSMEARENAAATLFSLSVIDENKV 384 (551)
Q Consensus 310 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~----~~~~~~~~aa~~L~~Ls~~~~~~~ 384 (551)
+.-|+++--+..++++..|-.+|...... +..+..+ +|.+++.|+. .+.+-.+-|+.+|. ...-.+.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~---~k~~~~~ 206 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLL---IKKIHRK 206 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTT---SHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHh---hhhhhhH
Confidence 34556666667888888888888877653 3344333 5666666654 24444444554433 1111111
Q ss_pred Hhhhh----CcHHHHHHHhccCChhHHHHHHHHHHHhccCC---C---------------------------------hH
Q 008835 385 AIGAA----GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ---G---------------------------------NK 424 (551)
Q Consensus 385 ~i~~~----~~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~---~---------------------------------~~ 424 (551)
....- .+++.|++....+.+.++..+-.+...+...- . ++
T Consensus 207 ~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred HhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 11111 34455555544445555544443333332200 0 00
Q ss_pred HHHHH--cCChHHHHHhhcc-CC--hhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008835 425 ARAVR--AGIVPPLMRFLKD-AG--GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 499 (551)
Q Consensus 425 ~~l~~--~g~i~~Lv~lL~~-~~--~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~~~~~~~k~~A~~~L~~L 499 (551)
....+ .+....|+++..+ .+ -.....++..|.+|....+. .....++..+++.+.+..|.+|..|..++..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 00000 1233334455422 33 45556666665666543221 11123566677777888899999999988777
Q ss_pred hcC
Q 008835 500 CTG 502 (551)
Q Consensus 500 ~~~ 502 (551)
...
T Consensus 364 l~~ 366 (997)
T 1vsy_5 364 CNK 366 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 297
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.26 E-value=16 Score=31.56 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=7.8
Q ss_pred CCCCCCcccc
Q 008835 209 KTCPKTQQTL 218 (551)
Q Consensus 209 ~~CP~c~~~l 218 (551)
..||.|+.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4699999765
No 298
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=23.20 E-value=2.3e+02 Score=23.53 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=52.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008835 473 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 542 (551)
Q Consensus 473 ~v~~L~~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~l~ 542 (551)
.+..+.+.+....+.-|-.++.++-.++.+...........++.+.+.......++..|.+...++..=.
T Consensus 44 Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 44 FVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4556666677677888888888888888765433455667778888888888888999988877776544
No 299
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.17 E-value=6.4 Score=38.00 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=32.3
Q ss_pred CCCcccccccccCcCCeec----cCc--ccccHHHHHHHHHhCCCCCCCCccc
Q 008835 171 PDDFRCPISLELMKDPVIV----STG--QTYERSCIQKWLDAGHKTCPKTQQT 217 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~----~cg--h~~~~~ci~~~~~~~~~~CP~c~~~ 217 (551)
...-.||+|+....--++. .-| +-+|..|=..|-- ....||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 4567899999876555554 245 3568888777854 35679999875
No 300
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.87 E-value=75 Score=23.72 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=25.8
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHh----CCCCCCCCcccccC
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLH 220 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~----~~~~CP~c~~~l~~ 220 (551)
...+.|++|...|... ..+...... ..+.|+.|++.+..
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 4558999999888764 334444432 23579999987754
No 301
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.69 E-value=96 Score=23.12 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.2
Q ss_pred CCCcccccccccCcC-CeeccCcccccHHHHHHHHH
Q 008835 171 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLD 205 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~~ 205 (551)
++-|.|..|...+.+ .....-|..||..|..+.+.
T Consensus 49 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 49 PECFVCADCNLNLKQKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp TTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS
T ss_pred ccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 455999999998875 45566788999999877653
No 302
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=22.68 E-value=17 Score=24.08 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=21.9
Q ss_pred cccccccccCcCCeeccCcccccHHHHHHHHHh----CCCCCCCCcccccC
Q 008835 174 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLH 220 (551)
Q Consensus 174 ~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~----~~~~CP~c~~~l~~ 220 (551)
|.|++|...+..+.. +...... ....|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKPSM-----------LKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSHHH-----------HHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCHHH-----------HHHHHHhcCCCCCccCCCCCchhcC
Confidence 678888887766422 2233321 23579999877643
No 303
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.72 E-value=29 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=18.3
Q ss_pred CCCCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCC-CCCCCccc
Q 008835 169 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHK-TCPKTQQT 217 (551)
Q Consensus 169 ~~~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~-~CP~c~~~ 217 (551)
..|..+.|.-|+..+. . ..... .||.|+.+
T Consensus 69 ~~p~~~~C~~CG~~~e------------~-------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 69 DEKVELECKDCSHVFK------------P-------NALDYGVCEKCHSK 99 (119)
T ss_dssp EECCEEECSSSSCEEC------------S-------CCSTTCCCSSSSSC
T ss_pred eccceEEcCCCCCEEe------------C-------CCCCCCcCccccCC
Confidence 3466777776655543 2 11245 79999876
No 304
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.71 E-value=60 Score=26.16 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCCcccccccccCc--CCeeccCcccccHHHHHHHHHh
Q 008835 171 PDDFRCPISLELMK--DPVIVSTGQTYERSCIQKWLDA 206 (551)
Q Consensus 171 ~~~~~Cpic~~~~~--~Pv~~~cgh~~~~~ci~~~~~~ 206 (551)
++-|.|..|...+. +.....-|..||..|..+.+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 46699999999884 4566778999999999988864
No 305
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=21.45 E-value=98 Score=23.27 Aligned_cols=35 Identities=9% Similarity=0.343 Sum_probs=26.1
Q ss_pred CCCCCCcccccccccCcCCeec---cCcccccHHHHHHH
Q 008835 168 PVIPDDFRCPISLELMKDPVIV---STGQTYERSCIQKW 203 (551)
Q Consensus 168 ~~~~~~~~Cpic~~~~~~Pv~~---~cgh~~~~~ci~~~ 203 (551)
..++.+-.|+||...-.+- .+ -||..|...|+.+-
T Consensus 10 e~~~~D~~C~VC~~~t~~~-l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAES-LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSC-CSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccccccccc-eeccccccccccHhhcccc
Confidence 4577888999998654333 33 48889999999885
No 306
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.26 E-value=84 Score=22.76 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=20.7
Q ss_pred CCcccccccccCcC-CeeccCcccccHHHHHHHH
Q 008835 172 DDFRCPISLELMKD-PVIVSTGQTYERSCIQKWL 204 (551)
Q Consensus 172 ~~~~Cpic~~~~~~-Pv~~~cgh~~~~~ci~~~~ 204 (551)
+-|.|..|...+.+ .....-|..||..|..+.+
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred CcCChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 45777777776654 3344566777777766554
No 307
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=21.16 E-value=25 Score=24.40 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=23.7
Q ss_pred CcccccccccCcCCeeccCcccccHHHHHHHHH----hCCCCCCCCcccccC
Q 008835 173 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLD----AGHKTCPKTQQTLLH 220 (551)
Q Consensus 173 ~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~----~~~~~CP~c~~~l~~ 220 (551)
.|.|++|...|..+-. +..... .....|+.|+..+..
T Consensus 4 py~C~~C~k~F~~~~~-----------L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASG-----------LSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHHH-----------HHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHHH-----------HHHHHHHhCCCcCeECCCCCCCcCC
Confidence 4789988888876422 222222 234679999987754
No 308
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.67 E-value=21 Score=26.15 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCcccccccccCcC-Ceec--cCcccccHHHHHHHHH---hCCCCCCCCccccc
Q 008835 171 PDDFRCPISLELMKD-PVIV--STGQTYERSCIQKWLD---AGHKTCPKTQQTLL 219 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~-Pv~~--~cgh~~~~~ci~~~~~---~~~~~CP~c~~~l~ 219 (551)
.+...|++|...-.. .++. .|...|...|+.--.. .+...||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 355679999876543 3443 5667788888753322 14678999976543
No 309
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.67 E-value=2.8e+02 Score=23.03 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHhcCCHHHHHHhhcC----CC--------HHHHHHHHHH
Q 008835 265 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSS----TD--------PRTQEHAVTA 331 (551)
Q Consensus 265 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~----~~--------~~~~~~a~~~ 331 (551)
...+..|...|...++....+|+..|.+|+++.. ..+..+...- .+++.+.+ ++ ..+|..|-.+
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~---~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS---VAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT---HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH---HHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 3678899999999999999999999999997544 3444444442 23444432 22 3466666555
Q ss_pred HHhcc
Q 008835 332 LLNLS 336 (551)
Q Consensus 332 L~nLs 336 (551)
+..|.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55443
No 310
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.55 E-value=32 Score=29.88 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=18.4
Q ss_pred CCCcccccccccCcCCeeccCcccccHHHHHHHHHhCCCCCCCCccccc
Q 008835 171 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 219 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~Pv~~~cgh~~~~~ci~~~~~~~~~~CP~c~~~l~ 219 (551)
+..+.|++|+.+... .-...||.|+.+-.
T Consensus 136 ~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 136 KKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp SCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 456788887766541 12347999986543
No 311
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.43 E-value=1.3e+02 Score=26.54 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=68.0
Q ss_pred CcHHHHHHHhcC------CHHHHHHHHHHHHHhcCCcchhHHhhhhCcHHHHHHHhcc---CChhHHHHHHHHHHHhccC
Q 008835 350 AIPDIVDVLKNG------SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD---GTPRGKKDAATAIFNLSIY 420 (551)
Q Consensus 350 ~i~~Lv~~L~~~------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~---~~~~~~~~a~~aL~nL~~~ 420 (551)
.+|-++.++.++ +.............|..++...-.-.-+..+|+++..+-. +....+..|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 345555554332 4444555555555555554322222223567777776533 2337899999999999864
Q ss_pred CChHHHHHHcCChHHHHHhhccCC--hhhHHHHHHHHHHHhcChhhHHHhhhCCCHHHHHHHHh
Q 008835 421 QGNKARAVRAGIVPPLMRFLKDAG--GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR 482 (551)
Q Consensus 421 ~~~~~~l~~~g~i~~Lv~lL~~~~--~~~~~~al~~L~nL~~~~~~~~~i~~~~~v~~L~~lL~ 482 (551)
-.+...-+...++..+.+.+.+++ .....-|+..|..+.. ..++.-.+|.+-.+.+
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~------~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK------NVVNTVIREHAEEYKR 178 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH------HHHHTHHHHHHHHHHH
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH------HHHHHhhhcCHHHHHH
Confidence 333222334445667777776643 3344445555555543 1222223455555554
No 312
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.35 E-value=60 Score=23.00 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=22.3
Q ss_pred CCCcccccccccCcCC-eeccCcccccHHHHHHHH
Q 008835 171 PDDFRCPISLELMKDP-VIVSTGQTYERSCIQKWL 204 (551)
Q Consensus 171 ~~~~~Cpic~~~~~~P-v~~~cgh~~~~~ci~~~~ 204 (551)
++-|.|..|...+.+. ....-|..||..|..+.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 31 ETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp TTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred ccCCcccccCCccCCCccCccCCeEECHHHHhHHh
Confidence 3457788887766543 344567778888776554
No 313
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.25 E-value=41 Score=25.59 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=25.1
Q ss_pred CCcccccccccCc-CCeeccCcccccHHHHHHHHH-hCCCCCCCCcccccC
Q 008835 172 DDFRCPISLELMK-DPVIVSTGQTYERSCIQKWLD-AGHKTCPKTQQTLLH 220 (551)
Q Consensus 172 ~~~~Cpic~~~~~-~Pv~~~cgh~~~~~ci~~~~~-~~~~~CP~c~~~l~~ 220 (551)
..|.|++|...|. ....+. .-+...-. ...+.|+.|+..+..
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~-------~H~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK-------KHMEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH-------HHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred CCcCCCCCCCChhhhHHHHH-------HHHHHHcCCCCCEECCCCCCccCC
Confidence 4589999999887 653332 11111111 234679999987743
No 314
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.20 E-value=68 Score=22.75 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=15.0
Q ss_pred CCcccccccccCcCC-eeccCcccccHHHHH
Q 008835 172 DDFRCPISLELMKDP-VIVSTGQTYERSCIQ 201 (551)
Q Consensus 172 ~~~~Cpic~~~~~~P-v~~~cgh~~~~~ci~ 201 (551)
+-|.|..|...+.+. ....-|..||..|..
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcC
Confidence 345666665554432 233455556665543
Done!