Query 008836
Match_columns 551
No_of_seqs 199 out of 820
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 17:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00148 potassium transporter 100.0 1E-185 2E-190 1530.0 49.8 550 1-551 222-785 (785)
2 PLN00151 potassium transporter 100.0 5E-185 1E-189 1524.5 51.1 546 1-551 299-852 (852)
3 PLN00149 potassium transporter 100.0 8E-185 2E-189 1524.6 51.5 545 1-551 223-779 (779)
4 PLN00150 potassium ion transpo 100.0 2E-184 4E-189 1519.2 50.5 540 1-551 239-779 (779)
5 TIGR00794 kup potassium uptake 100.0 4E-165 9E-170 1358.9 47.8 495 1-551 193-688 (688)
6 PRK10745 trkD potassium transp 100.0 3E-148 6E-153 1210.2 42.6 452 1-551 168-622 (622)
7 PF02705 K_trans: K+ potassium 100.0 5E-140 1E-144 1136.3 33.7 378 1-381 157-534 (534)
8 COG3158 Kup K+ transporter [In 100.0 2E-135 3E-140 1086.6 40.4 455 1-551 173-627 (627)
9 TIGR00911 2A0308 L-type amino 69.3 14 0.0003 40.9 7.4 20 47-66 235-255 (501)
10 PF14362 DUF4407: Domain of un 68.3 52 0.0011 34.1 11.0 84 198-281 15-111 (301)
11 TIGR03813 put_Glu_GABA_T putat 61.3 78 0.0017 34.7 11.3 53 48-100 196-250 (474)
12 COG4059 MtrE Tetrahydromethano 50.4 16 0.00034 37.3 3.3 39 244-282 243-287 (304)
13 PF06570 DUF1129: Protein of u 48.5 79 0.0017 31.2 7.9 19 257-275 180-198 (206)
14 COG0531 PotE Amino acid transp 45.4 4.1E+02 0.0088 28.3 14.0 108 49-157 204-324 (466)
15 PF13520 AA_permease_2: Amino 43.7 96 0.0021 33.0 8.3 159 49-213 191-366 (426)
16 PRK10655 potE putrescine trans 42.1 3.4E+02 0.0074 29.3 12.3 15 144-158 297-311 (438)
17 PRK10435 cadB lysine/cadaverin 41.1 3.5E+02 0.0077 29.3 12.2 66 142-213 293-363 (435)
18 KOG4742 Predicted chitinase [G 39.8 13 0.00028 39.1 0.9 33 69-110 172-210 (286)
19 TIGR00907 2A0304 amino acid pe 36.7 1.7E+02 0.0036 32.1 9.0 25 257-281 454-478 (482)
20 TIGR00909 2A0306 amino acid tr 34.5 3.2E+02 0.007 29.2 10.6 106 52-158 201-317 (429)
21 TIGR00905 2A0302 transporter, 33.6 2.7E+02 0.0058 30.6 10.0 43 116-158 279-321 (473)
22 KOG3643 GABA receptor [Signal 33.5 34 0.00074 38.1 2.9 90 151-244 225-324 (459)
23 TIGR00906 2A0303 cationic amin 32.4 6.3E+02 0.014 28.7 12.9 62 138-205 329-394 (557)
24 TIGR03810 arg_ornith_anti argi 32.2 5.1E+02 0.011 28.4 11.8 44 115-158 274-317 (468)
25 PRK15049 L-asparagine permease 29.9 5.1E+02 0.011 28.9 11.4 30 53-82 227-258 (499)
26 PF05545 FixQ: Cbb3-type cytoc 29.8 53 0.0012 25.2 2.7 29 265-293 19-47 (49)
27 PF05313 Pox_P21: Poxvirus P21 27.8 94 0.002 30.9 4.6 62 79-150 88-149 (189)
28 PRK11049 D-alanine/D-serine/gl 27.6 5.3E+02 0.011 28.3 11.0 107 51-158 216-333 (469)
29 TIGR00908 2A0305 ethanolamine 27.0 4.1E+02 0.009 28.6 9.9 21 138-158 295-315 (442)
30 TIGR00930 2a30 K-Cl cotranspor 26.8 6.5E+02 0.014 31.0 12.3 60 137-199 404-463 (953)
31 PRK11387 S-methylmethionine tr 25.5 6.5E+02 0.014 27.6 11.2 30 52-81 212-243 (471)
32 PRK10746 putative transport pr 24.9 8.7E+02 0.019 26.7 12.1 25 257-281 427-451 (461)
33 PF05297 Herpes_LMP1: Herpesvi 24.3 25 0.00055 37.2 0.0 60 220-282 126-190 (381)
34 PRK13108 prolipoprotein diacyl 24.2 2.9E+02 0.0062 31.2 8.1 19 199-217 24-42 (460)
35 COG2179 Predicted hydrolase of 23.4 18 0.00038 35.6 -1.2 60 486-547 55-118 (175)
36 cd05900 Ig_Aggrecan Immunoglob 22.8 1E+02 0.0022 27.7 3.6 28 357-384 75-102 (112)
37 TIGR00145 FTR1 family protein. 22.4 4.8E+02 0.01 27.5 9.0 31 260-290 79-109 (283)
38 PRK14417 membrane protein; Pro 22.3 5.8E+02 0.013 26.3 9.2 17 190-206 101-117 (232)
39 PRK11492 hyfE hydrogenase 4 me 21.5 8.5E+02 0.019 24.6 12.0 129 153-297 78-213 (216)
40 PRK11021 putative transporter; 21.4 1E+03 0.022 25.4 12.1 32 52-83 183-216 (410)
41 TIGR03428 ureacarb_perm permea 21.2 1.1E+03 0.024 25.8 13.6 35 130-164 308-345 (475)
42 PRK05151 electron transport co 21.0 2.5E+02 0.0054 28.1 6.2 43 181-223 19-63 (193)
43 PRK10249 phenylalanine transpo 20.7 1E+03 0.022 26.1 11.5 34 49-82 212-247 (458)
44 TIGR01940 nqrE NADH:ubiquinone 20.5 3E+02 0.0065 27.7 6.7 43 181-223 18-62 (200)
45 PF07331 TctB: Tripartite tric 20.5 6.2E+02 0.014 22.7 12.0 18 115-132 31-48 (141)
46 PF02508 Rnf-Nqr: Rnf-Nqr subu 20.1 3.6E+02 0.0078 26.7 7.1 43 181-223 19-63 (190)
No 1
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=1.1e-185 Score=1529.98 Aligned_cols=550 Identities=45% Similarity=0.860 Sum_probs=487.5
Q ss_pred CcchhHHHHHHHHHHHHhhhhhcCCcceeeecChHHHHHHHHhcCcchhhhccceehhccchhhhhhccCCCcccceeeh
Q 008836 1 MFAPVLALWFFSLGSIGLYNLVKYDISVVRAFNPIYIYLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFSVKAIQIA 80 (551)
Q Consensus 1 ~F~PIm~vWf~~l~~~Giyni~~~~p~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~a 80 (551)
+|||||++||++|+++|+|||++|||+|||||||+||++||++||++||.+||||+||+||+|||||||||||++|||+|
T Consensus 222 ~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~~~LGgV~L~iTGaEALyADlGHFg~~~Iria 301 (785)
T PLN00148 222 MFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDGWISLGGILLSITGTEAMFADLGHFTAASIRLA 301 (785)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCceEEeecchheeccchhhhhhhccCCCccceEEe
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeE
Q 008836 81 FTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKI 160 (551)
Q Consensus 81 w~~~V~P~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki 160 (551)
|+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||+|||+||+++||++||||||+||
T Consensus 302 w~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI 381 (785)
T PLN00148 302 FATVIYPCLVVQYMGQAAFLSKNIPSIPNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKV 381 (785)
T ss_pred eeehHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008836 161 IHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS 240 (551)
Q Consensus 161 vhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~f~~ 240 (551)
+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||+|+++||+.+||||++++++|+++|++
T Consensus 382 vhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ 461 (785)
T PLN00148 382 VHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFITTFLMALVIIFVWQKSIILAALFLLFFGF 461 (785)
T ss_pred EecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHHhcCCCCCcccceeEEEeecCCCC
Q 008836 241 VELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNELVQG 320 (551)
Q Consensus 241 ie~~f~sa~l~Kv~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~~~~~ 320 (551)
+|++|||||+.|||||||+||++|++++++|++||||++++++++.+|++|++++.++.++.++.||||+|+|||++.+|
T Consensus 462 ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~RVpG~~vf~t~~~~g 541 (785)
T PLN00148 462 IEGVYLSAALMKVPQGGWVPLVLSAIFMSIMYIWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATG 541 (785)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred chhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHHHHHH
Q 008836 321 IPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVASLEK 400 (551)
Q Consensus 321 vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~~f~~~l~~~L~~ 400 (551)
+|++|.||++|||++||++||||||++|+|+||++|||+++|+++++||+|||++||||||.+++ ++|||++|+++|++
T Consensus 542 vP~~f~h~~~~~~~lHe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~yr~~r~vvryGy~d~~~~-~~dFe~~Lv~~L~~ 620 (785)
T PLN00148 542 VPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQRD-DGDFENMLVQSIAE 620 (785)
T ss_pred CCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCccccc-chHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877 99999999999999
Q ss_pred HHHHhhhhHHhh---h---ccc-cCccccc-cccCCCCCCCC-----CCCccccccccccccccccCCCCCCcccccccc
Q 008836 401 FLRKEAQDLALE---R---NLL-ESDLDSV-SVASRDPEASG-----SYGTEELKIPLMHERRFDESGTSASEETTSALP 467 (551)
Q Consensus 401 FI~~e~~~~~~~---~---~~~-~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~ 467 (551)
|||+|+.+...+ + +++ +++..+. ....+....++ ..+..+.+....+..++..+.+++...++++++
T Consensus 621 FIr~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (785)
T PLN00148 621 FIQMEAEEPQSSASESSSNDGRMAVISTRDVQSSSLLMVSEQELADIDDSIQSSKSLTLQSLQSAYEDENPGQSRRRRVR 700 (785)
T ss_pred HHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 999998531100 0 000 0000000 00000000000 000000000001111111111111122344555
Q ss_pred -CCCcCCCCCccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChhHHHHHHHHHHHHhhhccCCcccccCCCCCeEEee
Q 008836 468 -SSVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVG 546 (551)
Q Consensus 468 -~~~~~~~~~~~v~~El~~L~~A~eaGVvYIlG~s~vkAr~~Ss~lKKivIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVG 546 (551)
..+++.+.+++++||+++|++|+|+||+||+||++||||++|+|+||++||++|+|||||||+|.++|+|||+||||||
T Consensus 701 ~~~~~~~~~~~~~~~El~~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~KKivIn~~Y~FLRkNcR~~~~~L~IPh~~LleVG 780 (785)
T PLN00148 701 FQLPENPGMDPSVREELMDLIEAKEAGVAYIMGHSYVKARRSSSFLKKLAIDIGYSFLRKNCRGPAVALNIPHISLIEVG 780 (785)
T ss_pred ecccccccccchHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEcc
Confidence 2223333467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEC
Q 008836 547 MTYMV 551 (551)
Q Consensus 547 mvy~v 551 (551)
|+|||
T Consensus 781 M~Y~V 785 (785)
T PLN00148 781 MIYYV 785 (785)
T ss_pred eEEEC
Confidence 99997
No 2
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=4.5e-185 Score=1524.49 Aligned_cols=546 Identities=71% Similarity=1.201 Sum_probs=483.3
Q ss_pred CcchhHHHHHHHHHHHHhhhhhcCCcceeeecChHHHHHHHHhcCcchhhhccceehhccchhhhhhccCCCcccceeeh
Q 008836 1 MFAPVLALWFFSLGSIGLYNLVKYDISVVRAFNPIYIYLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFSVKAIQIA 80 (551)
Q Consensus 1 ~F~PIm~vWf~~l~~~Giyni~~~~p~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~a 80 (551)
+|||||++||++|+++|+|||++|||+|||||||+||++||++||++||.+||||+||+||+|||||||||||++|||+|
T Consensus 299 ~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw~~LGgVvLciTGaEALfADLGHFg~~sIqia 378 (852)
T PLN00151 299 AFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAWSALGGCVLCATGSEAMFADLGYFSVRSIQLA 378 (852)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceEEEecceeeeeccchhhhcccCCCCccceeee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeE
Q 008836 81 FTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKI 160 (551)
Q Consensus 81 w~~~V~P~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki 160 (551)
|+++|||||+|||+||||||++||++++||||+++|+|++||+|++||+||||||||+|||+||+++||++||||||+||
T Consensus 379 w~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkI 458 (852)
T PLN00151 379 FTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKI 458 (852)
T ss_pred ehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008836 161 IHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS 240 (551)
Q Consensus 161 vhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~f~~ 240 (551)
+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||||+++||+.+||||++++++|+++|++
T Consensus 459 vHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ 538 (852)
T PLN00151 459 IHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPVVFLS 538 (852)
T ss_pred EeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHHhcCCCCCcccceeEEEeecCCCC
Q 008836 241 VELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNELVQG 320 (551)
Q Consensus 241 ie~~f~sa~l~Kv~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~~~~~ 320 (551)
+|++|||||+.||+||||+||++|++++++|++||||++++|+++.+|++|++++.++.++.++.||||+|+|||++.+|
T Consensus 539 ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~yG~~~~~~~~~~~~vs~~~~~~L~~~~~~~RVpGiglf~t~~~~g 618 (852)
T PLN00151 539 VELVFFSSVLSSVGDGGWIPLVFASVFLCIMYIWNYGSKLKYQSEVRQKLSMDLMRELGSNLGTIRAPGIGLLYNELVKG 618 (852)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHHHHHH
Q 008836 321 IPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVASLEK 400 (551)
Q Consensus 321 vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~~f~~~l~~~L~~ 400 (551)
+|++|.||++|+|++||++||||||++|+|+||++|||+++|++++++|+|||++||||||.++++++|||++|+++|++
T Consensus 619 vP~~f~h~i~~~~alHe~~Vfv~ik~~~vP~V~~~eR~lv~ri~~~~~~~yr~vvrYGY~D~~~~~~~dFe~~Lv~~l~~ 698 (852)
T PLN00151 619 IPAIFGHFLTTLPAIHSTIIFVCIKYVPVPVVPQEERFLFRRVCPKDYHMFRCIARYGYKDVRKENHQAFEQLLIESLEK 698 (852)
T ss_pred CCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEcCCCCCCEEEEEEEEeecccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874489999999999999
Q ss_pred HHHHhhhhHHhhhccccCccccccccCC-CCCCCCCCCccccccccccccccc----cCCCCCCc--c-ccccccCCCcC
Q 008836 401 FLRKEAQDLALERNLLESDLDSVSVASR-DPEASGSYGTEELKIPLMHERRFD----ESGTSASE--E-TTSALPSSVMA 472 (551)
Q Consensus 401 FI~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--s-~~~~v~~~~~~ 472 (551)
|||.|+.+...+++.++..+++.+.... ....++. +..+.+.+......+. .+...+.+ + ..++++ .
T Consensus 699 fi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 773 (852)
T PLN00151 699 FIRREAQERALESDGNDDTDDEDSVTSSRVLIAPNG-SVYSLGVPLLADYRLTSKPIPEASTSEEVSPVLPSSSM----S 773 (852)
T ss_pred HHHhhhhhccccccccccccccccccccccccCCCc-cccccccccccccccccccccccccccccccccccccc----c
Confidence 9999985321111111000000000000 0000000 0000000000000000 00000000 0 011222 1
Q ss_pred CCCCccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChhHHHHHHHHHHHHhhhccCCcccccCCCCCeEEeeeEEEC
Q 008836 473 LDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 551 (551)
Q Consensus 473 ~~~~~~v~~El~~L~~A~eaGVvYIlG~s~vkAr~~Ss~lKKivIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGmvy~v 551 (551)
.+.++++++|+++|++|+|+||+||+||++||||++|+|+||++||++|+|||||||+|.++|+|||++||||||+|||
T Consensus 774 ~~~~~~~~~El~~l~~a~e~Gv~yilG~~~v~a~~~S~~~Kk~~in~~Y~fLRkN~R~~~~~L~iP~~~lleVGm~Y~v 852 (852)
T PLN00151 774 SDEDQSLEYELSFIREAKESGVVYLLGHGDVRARKNSWFIKKLVINYFYAFLRKNCRRGIANLSVPHSNIMQVGMTYMV 852 (852)
T ss_pred cccCccHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 2235789999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=8.2e-185 Score=1524.57 Aligned_cols=545 Identities=47% Similarity=0.836 Sum_probs=484.2
Q ss_pred CcchhHHHHHHHHHHHHhhhhhcCCcceeeecChHHHHHHHHhcCcchhhhccceehhccchhhhhhccCCCcccceeeh
Q 008836 1 MFAPVLALWFFSLGSIGLYNLVKYDISVVRAFNPIYIYLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFSVKAIQIA 80 (551)
Q Consensus 1 ~F~PIm~vWf~~l~~~Giyni~~~~p~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~a 80 (551)
+|||||++||++||++|+|||++|||+|||||||+||++||++||++||.+||||+||+||+|||||||||||++|||+|
T Consensus 223 ~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g~~~LGgV~L~iTG~EALyADlGHF~~~~Ir~a 302 (779)
T PLN00149 223 LFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIA 302 (779)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCceeEeecchhhcccchhhhhhcccCCCccceeee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhccchhhhccCCC---cccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCc
Q 008836 81 FTLVVFPCLLLAYMGQAAYLMKYPD---SANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPR 157 (551)
Q Consensus 81 w~~~V~P~L~l~Y~GQaA~l~~~p~---~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr 157 (551)
|+++|||||+|||+||||||++||+ +++||||+++|+|++||++++||+||||||||+|||+||+++||++||||||
T Consensus 303 w~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPr 382 (779)
T PLN00149 303 FTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPK 382 (779)
T ss_pred ehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999996 5666999999999999999999999999999999999999999999999999
Q ss_pred eeEeeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008836 158 LKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLV 237 (551)
Q Consensus 158 ~kivhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~ 237 (551)
+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||||+++||+.+||||++++++|+++
T Consensus 383 vkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~lv~~~~W~~~~~~~~~f~~~ 462 (779)
T PLN00149 383 VKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHKSVLLAICFIFF 462 (779)
T ss_pred ceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhhehHHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHHhcCCCCCcccceeEEEeecC
Q 008836 238 FGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNEL 317 (551)
Q Consensus 238 f~~ie~~f~sa~l~Kv~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~~ 317 (551)
|+++|++|||||+.|||||||+||++|++++++|++||||++++|+++.+|++|++++.++.++.++.||||+|+|||++
T Consensus 463 f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~ 542 (779)
T PLN00149 463 FGTIEALYFSASLIKFLEGAWVPIALSFIFLLVMYVWHYGTLKRYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLIHTEL 542 (779)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhccCCCCcccCcEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHHH
Q 008836 318 VQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVAS 397 (551)
Q Consensus 318 ~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~~f~~~l~~~ 397 (551)
.+|+|++|.||++|+|++||++||+|||++|+|+||++|||+++|++++++|+|||++||||||..++ ++|||++|+++
T Consensus 543 ~~gvP~~f~h~~~~~~~lhe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~~~~~r~vvryGy~d~~~d-~~dFE~~Lve~ 621 (779)
T PLN00149 543 VSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGRIGPKEYRLYRCIVRYGYRDVHKD-DMEFEKDLVCS 621 (779)
T ss_pred CCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEeecccccc-chHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 99999999999
Q ss_pred HHHHHHHhhhhHHhhhccc-c----CccccccccCCC-C-C-CCCCCCccccccccccccccccCCCCCCcccccccc-C
Q 008836 398 LEKFLRKEAQDLALERNLL-E----SDLDSVSVASRD-P-E-ASGSYGTEELKIPLMHERRFDESGTSASEETTSALP-S 468 (551)
Q Consensus 398 L~~FI~~e~~~~~~~~~~~-~----~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~-~ 468 (551)
|++|||+|+.+...+++.. + .+..+.+..++. . . .+...+..+.+.+..+...+. + .+..+++++ .
T Consensus 622 L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 696 (779)
T PLN00149 622 IAEFIRSEKPEPNGAPENEEGEDERMTVVGTCSTHLEGIQLREDDSDKQEPAGTSELREIRSP-P----VSRPKKRVRFV 696 (779)
T ss_pred HHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccCc-c----ccCcccceeec
Confidence 9999999974211111100 0 000000000000 0 0 000000000000000000000 0 011124455 2
Q ss_pred CCcCCCCCccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChhHHHHHHHHHHHHhhhccCCcccccCCCCCeEEeeeE
Q 008836 469 SVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMT 548 (551)
Q Consensus 469 ~~~~~~~~~~v~~El~~L~~A~eaGVvYIlG~s~vkAr~~Ss~lKKivIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGmv 548 (551)
.+++.+.+++++||+++|++|||+||+||+||++||||++|+|+||++||++|+|||||||+|.+.|+|||+|||||||+
T Consensus 697 ~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~KK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGmv 776 (779)
T PLN00149 697 VPESPKIDRGAREELQELMEAREAGMAYILGHSYVRAKQGSSMMKKLVINYGYDFLRRNSRGPRYALSVPHASTLEVGMV 776 (779)
T ss_pred cccccccchhHHHHHHHHHHHHHcCcEEEecCceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceE
Confidence 33344456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC
Q 008836 549 YMV 551 (551)
Q Consensus 549 y~v 551 (551)
|||
T Consensus 777 Y~v 779 (779)
T PLN00149 777 YHV 779 (779)
T ss_pred EEC
Confidence 997
No 4
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=2e-184 Score=1519.21 Aligned_cols=540 Identities=49% Similarity=0.913 Sum_probs=483.0
Q ss_pred CcchhHHHHHHHHHHHHhhhhhcCCcceeeecChHHHHHHHHhcCcchhhhccceehhccchhhhhhccCCCcccceeeh
Q 008836 1 MFAPVLALWFFSLGSIGLYNLVKYDISVVRAFNPIYIYLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFSVKAIQIA 80 (551)
Q Consensus 1 ~F~PIm~vWf~~l~~~Giyni~~~~p~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~a 80 (551)
+|||||++||++||++|+|||++|||+||||+||+||++||++||++||.+||||+||+||+|||||||||||++|||+|
T Consensus 239 ~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Iria 318 (779)
T PLN00150 239 LFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQGWESLGGIVLCMTGTEAMFADLGHFTVKSMQIA 318 (779)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCceEEEecceeeeecchhhhhccccCCCccceeee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeE
Q 008836 81 FTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKI 160 (551)
Q Consensus 81 w~~~V~P~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki 160 (551)
|+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||+|||+||+++||++||||||+||
T Consensus 319 w~~~V~P~LlL~Y~GQaA~ll~~p~~~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI 398 (779)
T PLN00150 319 FTSLVYPCLLLTYLGQAAYLVKHMEDVNDPFYRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKI 398 (779)
T ss_pred ehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008836 161 IHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS 240 (551)
Q Consensus 161 vhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~f~~ 240 (551)
+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||+|+++||+.+||||++++++|+++|++
T Consensus 399 ~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~~v~~~~W~~~~~~~~~f~~~f~~ 478 (779)
T PLN00150 399 VHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMIITTCLMTLVMIIIWRKHILLALLFFTVFAI 478 (779)
T ss_pred EecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhheehhhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHHhcCCCCCcccceeEEEeecCCCC
Q 008836 241 VELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNELVQG 320 (551)
Q Consensus 241 ie~~f~sa~l~Kv~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~~~~~ 320 (551)
+|++|||||+.|||||||+||++|++++++|++||||++++++++.+|++|++++.++.++.++.||||+|+|||++++|
T Consensus 479 ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~g 558 (779)
T PLN00150 479 IEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMYTWHYGTRKRYLYEMQHKVSVGWLLGLGPSLGLVRVPGIGLMYTDLAHG 558 (779)
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHhhcccCCCcccCcEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred chhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHHHHHH
Q 008836 321 IPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVASLEK 400 (551)
Q Consensus 321 vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~~f~~~l~~~L~~ 400 (551)
+|++|.||++|||++||++||+|||++|+|+||++|||+++|+++++||+|||++||||||+.++ ++|||++|+++|++
T Consensus 559 vP~~f~h~v~~~~~lhe~~Vfl~i~~~~vP~V~~~eR~~v~~i~~~~~r~~r~vvryGy~d~~~d-~~dFE~~LvesL~~ 637 (779)
T PLN00150 559 VPPLFSHFITNLPAIHSTVVFVCIKYLPVNTVPQDERFLIRRIGPRAYSMYRCAARYGYTDLEKK-DDNFEQLLIASLER 637 (779)
T ss_pred CCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCcCccc-chHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887 89999999999999
Q ss_pred HHHHhhhhHHhhhccccCccccccccCCCCCCCCCCCccccccc-cccccccccCCCCCCccccccccCCCcCCCCCccH
Q 008836 401 FLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIP-LMHERRFDESGTSASEETTSALPSSVMALDEDPSL 479 (551)
Q Consensus 401 FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~v~~~~~~~~~~~~v 479 (551)
|||+|+.+...+++..+++.+..+...+. .+.. ...+.+.+ ..+..++..+... ..+++++. .+.++++
T Consensus 638 FIr~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~v 707 (779)
T PLN00150 638 FIEIESFREQSDLESMAASWTPEELMGEG--NSVG-SGLFTQYDQSDINFATSQEWKR---PSSQEDSV----SGHSSDT 707 (779)
T ss_pred HHHhhhhcccccccccccccccccccccC--Cccc-cccccccccccccccccccccc---cccccccc----ccccccH
Confidence 99999753222211111110000000000 0000 00000000 0000011001000 00112221 1235789
Q ss_pred HHHHHHHHHHHhCCcEEEeeecEEEecCCCChhHHHHHHHHHHHHhhhccCCcccccCCCCCeEEeeeEEEC
Q 008836 480 EYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 551 (551)
Q Consensus 480 ~~El~~L~~A~eaGVvYIlG~s~vkAr~~Ss~lKKivIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGmvy~v 551 (551)
+||+++|++|+|+||+||+||++||||++|+|+||++||++|+|||||||+|.++|+|||+|||||||+|||
T Consensus 708 ~eEl~~L~~A~eaGVvYIlG~~~v~Ak~~Ss~~KK~vIN~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~V 779 (779)
T PLN00150 708 QDEVAFLNKCKEAGVVYILGNNDVKARKDSGFFKKVIINYIYTFLRRISRDSEVVLNIPHECLLKVGMVYYV 779 (779)
T ss_pred HHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCCccccCCChHHeEEeceEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=4.2e-165 Score=1358.91 Aligned_cols=495 Identities=41% Similarity=0.785 Sum_probs=468.5
Q ss_pred CcchhHHHHHHHHHHHHhhhhhcCCcceeeecChHHHHHHHHhcCcchhhhccceehhccchhhhhhccCCCcccceeeh
Q 008836 1 MFAPVLALWFFSLGSIGLYNLVKYDISVVRAFNPIYIYLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFSVKAIQIA 80 (551)
Q Consensus 1 ~F~PIm~vWf~~l~~~Giyni~~~~p~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~a 80 (551)
+|||||++||++||++|+|||++|||+||||+||+||++||.+||+.||.+||||+||+||+||||||||||||+|||+|
T Consensus 193 ~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~~~~LG~V~L~iTGaEALyADmGHFg~~~Ir~a 272 (688)
T TIGR00794 193 TFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVGWVSLGGVVLSITGVEAMFADLGHFGKLPIQLA 272 (688)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCceeeeccchhheeccHhhhhcccCCCCcccceee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeE
Q 008836 81 FTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKI 160 (551)
Q Consensus 81 w~~~V~P~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki 160 (551)
|+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||+|||+||+++||++||||||+||
T Consensus 273 w~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I 352 (688)
T TIGR00794 273 WFTFVYPSLILCYIGQAAYLSKHPEAIKNPFFLSIPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKI 352 (688)
T ss_pred hHHHHHHHHHHHHcchHHHHhcCcchhcCcHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008836 161 IHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS 240 (551)
Q Consensus 161 vhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~f~~ 240 (551)
+|||++++||||||+|||+||++|+++|++||||++||+|||+||++||++||+|+++||+.+||||++++++++++|+.
T Consensus 353 ~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~ 432 (688)
T TIGR00794 353 IHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGTFLVTTCLMTVVMTIVWKWNIYFVALFLLVFLS 432 (688)
T ss_pred EecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhhhhhhhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHHhcCC-CCCcccceeEEEeecCCC
Q 008836 241 VELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGST-LGTVRVPGIGLLYNELVQ 319 (551)
Q Consensus 241 ie~~f~sa~l~Kv~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~rvpG~~if~t~~~~ 319 (551)
+|+.|||||+.|+|||||+||++|++++++|++|+||++++++++.++++|++++++.+.+ .+.+|+||+|+|+|++++
T Consensus 433 id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~l~rvpG~avf~t~~~~ 512 (688)
T TIGR00794 433 VELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTWRYGRFRKLRRDHEHRVSISALIASLQPKPGLVRVPGIGIYYSNLVN 512 (688)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCcccCCeEEEeeCCcc
Confidence 9999999999999999999999999999999999999999999999999999999885544 445899999999999999
Q ss_pred CchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHHHHH
Q 008836 320 GIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVASLE 399 (551)
Q Consensus 320 ~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~~f~~~l~~~L~ 399 (551)
++|++|.||++|||++||++||+||+++|+|+||++||++++++++++ |+|||++||||||+++. +++|+++++++|+
T Consensus 513 ~vP~~~~h~l~~~~~lhe~~vfltv~~~~~P~Vp~~eR~~v~~l~~~~-g~~rv~~~yGf~e~~~~-~~~l~~~ii~~L~ 590 (688)
T TIGR00794 513 GIPAVFGHLVTKFPSIHEVFIFLSLRTLDAPTVHNEERVQISQVGPTE-GMYRCVIRYGFMDTPNE-PKELAAHIVNSIV 590 (688)
T ss_pred CCCHHHHHHHHhCCccceEEEEEEEEECCCCcCCcceEEEEEEEcCCC-CEEEEEEEecCCcCCCc-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999754 89999999999999998 8899999999999
Q ss_pred HHHHHhhhhHHhhhccccCccccccccCCCCCCCCCCCccccccccccccccccCCCCCCccccccccCCCcCCCCCccH
Q 008836 400 KFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRFDESGTSASEETTSALPSSVMALDEDPSL 479 (551)
Q Consensus 400 ~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~~~~~~~~v 479 (551)
+|++++..+...+ + .. . . + . +.+.+.
T Consensus 591 ~fi~~~~~~~~~~--------~-----------~~------~--------~---~------~------------~~~~~~ 616 (688)
T TIGR00794 591 EFVEHECGFNLNN--------L-----------EE------L--------S---D------K------------RCRMPI 616 (688)
T ss_pred HHHHHHhhhcccc--------c-----------cc------c--------c---c------c------------ccccch
Confidence 9999875310000 0 00 0 0 0 0 001135
Q ss_pred HHHHHHHHHHHhCCcEEEeeecEEEecCCCChhHHHHHHHHHHHHhhhccCCcccccCCCCCeEEeeeEEEC
Q 008836 480 EYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 551 (551)
Q Consensus 480 ~~El~~L~~A~eaGVvYIlG~s~vkAr~~Ss~lKKivIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGmvy~v 551 (551)
+||++++++++|+||+|++||++++++++|+++||+.||++|.|||||||++...++|||+|++||||.||+
T Consensus 617 eee~~~~~~~~~~gv~yflg~~~~~~~~~~~~~~~~~I~~lf~~l~rn~~~~~~~~~iP~~rvvevG~~~~i 688 (688)
T TIGR00794 617 EEIFENAMETKEHGYSYFMGEESLILKKRSPILRKIRVNHVFLFIRRNARRAPKVLEIPPDRLLEVGTVVEI 688 (688)
T ss_pred HHHHHHHHHHhhcCCEEEeeceEEEECCCccHHHHHHHHHHHHHHHHhccChhhheeCChhhEEEEeeEEEC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999996
No 6
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=2.6e-148 Score=1210.24 Aligned_cols=452 Identities=31% Similarity=0.582 Sum_probs=426.9
Q ss_pred CcchhHHHHHHHHHHHHhhhhhcCCcceeeecChHHHHHHHHhcCcchhhhccceehhccchhhhhhccCCCcccceeeh
Q 008836 1 MFAPVLALWFFSLGSIGLYNLVKYDISVVRAFNPIYIYLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFSVKAIQIA 80 (551)
Q Consensus 1 ~F~PIm~vWf~~l~~~Giyni~~~~p~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~a 80 (551)
+|||||++||++||++|+|||++ ||+||+|+||+||++||.+||..||.+||+|+||+||+||||||||||||+|||+|
T Consensus 168 ~FgPIm~vWF~~i~~~Gi~~I~~-~P~Vl~AlnP~ya~~f~~~~~~~gf~~LG~V~L~vTGaEALYADmGHFG~~~Ir~a 246 (622)
T PRK10745 168 LFAPIMLTWFLTLAVLGLRSIIA-NPEVLHALNPMWAVHFFLEYKTVSFFALGAVVLAITGVEALYADMGHFGKFPIRLA 246 (622)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhc-CHHHHhHhCHHHHHHHHHhCCCceEEEecceeeeccchHHHhhccCCCCccceeee
Confidence 59999999999999999999997 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeE
Q 008836 81 FTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKI 160 (551)
Q Consensus 81 w~~~V~P~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki 160 (551)
|+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||+|||+||+++||++||||||+||
T Consensus 247 W~~~v~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I 326 (622)
T PRK10745 247 WFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRI 326 (622)
T ss_pred ehhhHHHHHHHHhcchHHHHhcCchhhcCcHHHhCChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008836 161 IHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS 240 (551)
Q Consensus 161 vhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~f~~ 240 (551)
+|||++++||||||+|||+||++|++++++||||++||+|||+||++||++||+|++++++.+|+|+++++++++++|+.
T Consensus 327 ~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiAVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~ 406 (622)
T PRK10745 327 IHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLC 406 (622)
T ss_pred EeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhhheeHhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHHhcCCCCCcccceeEEEeecCCCC
Q 008836 241 VELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNELVQG 320 (551)
Q Consensus 241 ie~~f~sa~l~Kv~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~~~~~ 320 (551)
+|+.||+||+.|++||||+||++|++++++|++|++|++++++++.+++++++++++.+++.++.|+||+|+|+|+..++
T Consensus 407 id~~ff~anl~Ki~~GGW~pl~ia~v~~~iM~tW~~G~~~~~~~~~~~~~~l~~f~~~l~~~~~~rvpG~avflt~~~~~ 486 (622)
T PRK10745 407 IDIPLFSANLDKLLSGGWLPLSLGLVMFIVMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINV 486 (622)
T ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCHHHHHHHhhhcCCCccCeEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred chhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHHHHHH
Q 008836 321 IPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVASLEK 400 (551)
Q Consensus 321 vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~~f~~~l~~~L~~ 400 (551)
+|+++.|++|||+++||++||+||+++|+|+||++||++++++++ |+|||++||||||+++. ++.+
T Consensus 487 vP~~l~h~lk~~~~lhe~~v~l~v~~~~~P~V~~~eR~~v~~l~~---g~~rv~~~yGf~e~~~i-~~~L---------- 552 (622)
T PRK10745 487 IPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSP---TFWRVVASYGWRETPNV-EEVF---------- 552 (622)
T ss_pred CCHHHHHHhhcCCccceEEEEEEEEECCCcccCcccEEEEEEECC---CEEEEEEEecCCCCCCH-HHHH----------
Confidence 999999999999999999999999999999999999999999996 69999999999998765 2221
Q ss_pred HHHHhhhhHHhhhccccCccccccccCCCCCCCCCCCccccccccccccccccCCCCCCccccccccCCCcCCCCCccHH
Q 008836 401 FLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRFDESGTSASEETTSALPSSVMALDEDPSLE 480 (551)
Q Consensus 401 FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~~~~~~~~v~ 480 (551)
+.... + . . ..+
T Consensus 553 --~~~~~------~--g-----------~--~~~---------------------------------------------- 563 (622)
T PRK10745 553 --HRCGL------E--G-----------L--SCR---------------------------------------------- 563 (622)
T ss_pred --HHHHh------C--C-----------C--CCC----------------------------------------------
Confidence 11100 0 0 0 000
Q ss_pred HHHHHHHHHHhCCcEEEeeecEEEecCCCC---hhHHHHHHHHHHHHhhhccCCcccccCCCCCeEEeeeEEEC
Q 008836 481 YELSALREAIDSGFTYLLAHGDVRAKKKSF---FLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 551 (551)
Q Consensus 481 ~El~~L~~A~eaGVvYIlG~s~vkAr~~Ss---~lKKivIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGmvy~v 551 (551)
-..++|.+||+.+...++++ |-|| +|.||.||+++....+++|++|++|+|+.+|+
T Consensus 564 ----------~~~~s~fl~r~~l~~~~~~~m~~wr~~-----lF~~m~rna~~~~~~f~lP~~rvvelG~~v~i 622 (622)
T PRK10745 564 ----------MMETSFFMSHESLILGKRPWYLRLRGK-----LFLLLQRNALRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred ----------ccceEEEEeeEEEEeCCCCCcHHHHHH-----HHHHHHHcCCCHHHHhCCCcccEEEEeeEEeC
Confidence 02679999999999888887 5554 89999999999999999999999999999886
No 7
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=100.00 E-value=5e-140 Score=1136.34 Aligned_cols=378 Identities=44% Similarity=0.813 Sum_probs=374.6
Q ss_pred CcchhHHHHHHHHHHHHhhhhhcCCcceeeecChHHHHHHHHhcCcchhhhccceehhccchhhhhhccCCCcccceeeh
Q 008836 1 MFAPVLALWFFSLGSIGLYNLVKYDISVVRAFNPIYIYLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFSVKAIQIA 80 (551)
Q Consensus 1 ~F~PIm~vWf~~l~~~Giyni~~~~p~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~a 80 (551)
+|||||++||++||++|+|||++ +|+||+|+||+|+++||.+||+.||.+||+|+||+||+||||||||||||+|||+|
T Consensus 157 ~FgPim~~WF~~l~~~G~~~I~~-~p~Vl~A~nP~yai~f~~~~~~~~~~~LG~V~L~~TGaEALyADmGHfg~~~Ir~a 235 (534)
T PF02705_consen 157 LFGPIMLLWFLTLGVLGLYNIIQ-HPEVLKALNPYYAIRFFIRNGWIGFFVLGAVFLCVTGAEALYADMGHFGRKPIRIA 235 (534)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhh-CHHHHHHhCHHHHHHHHHHcCCchhhhcchHHHHHhhHHHHHhhhccccchhhhhh
Confidence 59999999999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeE
Q 008836 81 FTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKI 160 (551)
Q Consensus 81 w~~~V~P~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki 160 (551)
|+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||+|||+||+++||++||||||+||
T Consensus 236 w~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I 315 (534)
T PF02705_consen 236 WFFLVFPALLLNYFGQGALLLSHPEAVSNPFFLLIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKI 315 (534)
T ss_pred HHHHHHHHHHHHHccHHHHHHcCcchhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008836 161 IHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS 240 (551)
Q Consensus 161 vhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~f~~ 240 (551)
+|||++.+||||||+|||+||++|++++++||||++||+|||+||++||++||+|++++++.+||||++++++++++|+.
T Consensus 316 ~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~fl~ 395 (534)
T PF02705_consen 316 VHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAVTGTMLITTILLFLVMRRVWKWPLWLALLFFLFFLV 395 (534)
T ss_pred EECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHHhcCCCCCcccceeEEEeecCCCC
Q 008836 241 VELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNELVQG 320 (551)
Q Consensus 241 ie~~f~sa~l~Kv~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~~~~~ 320 (551)
+|+.||+||+.|++||||+||++|++++++|++|+||+++++++++++++++++++++.++.++.|+||+|+|+|+..++
T Consensus 396 id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~aVFlt~~~~~ 475 (534)
T PF02705_consen 396 IDLLFFSANLLKFPHGGWFPLLIAAVLFTIMYTWRRGRKLLYEFERENKLPLDDFLELLEDQSIPRVPGTAVFLTRSPDG 475 (534)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhhhCCCceecceEEEEcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeec
Q 008836 321 IPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKD 381 (551)
Q Consensus 321 vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~d 381 (551)
+|+++.|+++||+++||+++|+|++++|+|+||++||++++++++ +++|||++||||||
T Consensus 476 vP~~l~h~l~~~~vlhe~~v~l~v~~~~vP~V~~~~R~~v~~l~~--~g~~rv~~ryGf~e 534 (534)
T PF02705_consen 476 VPPALLHNLKHNKVLHERVVFLTVKTEPVPRVPPEERYEVERLGP--DGFYRVTLRYGFME 534 (534)
T ss_pred CcHHHHHHHHhCCcccceEEEEEEEEeccCCCCCceEEEEEEecC--CCEEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999996 38999999999998
No 8
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-135 Score=1086.64 Aligned_cols=455 Identities=33% Similarity=0.601 Sum_probs=429.6
Q ss_pred CcchhHHHHHHHHHHHHhhhhhcCCcceeeecChHHHHHHHHhcCcchhhhccceehhccchhhhhhccCCCcccceeeh
Q 008836 1 MFAPVLALWFFSLGSIGLYNLVKYDISVVRAFNPIYIYLFFKKNGKDAWSALGGCVLCITGAEAMFADLGHFSVKAIQIA 80 (551)
Q Consensus 1 ~F~PIm~vWf~~l~~~Giyni~~~~p~Vl~AlnP~ya~~f~~~~g~~g~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~a 80 (551)
+|||||++||+++|.+|++||.+ ||+||+|+||+||++|+.++|..||+.||+||||+||+||||||||||||+|||.|
T Consensus 173 ~FGPVm~lWF~~l~~~Gl~~i~~-~p~IL~AiNP~yAi~fl~~~~~~gf~vLGaVfLavTGaEALYADmGHfGr~pI~~A 251 (627)
T COG3158 173 LFGPVMLLWFLALAVLGLINIID-DPEILRAINPYYAVHFLLEEGFVGFFVLGAVFLAVTGAEALYADMGHFGRKPIRVA 251 (627)
T ss_pred hhccHHHHHHHHHHHHHHHHHhc-CHHHHHHhChHHHHHHHHhCCceEEEEeeeeeeeeccHHHHHhhccccCCccHHHH
Confidence 59999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeE
Q 008836 81 FTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKI 160 (551)
Q Consensus 81 w~~~V~P~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki 160 (551)
|+++|+|||+|||+||||++++|||+..||||.++|+|++||+++|||+||||||||+|||+||++|||++||++||+||
T Consensus 252 Wf~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~~P~~aliP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I 331 (627)
T COG3158 252 WFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWALIPLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRI 331 (627)
T ss_pred HHHHHHHHHHHHHccccceeccCcccccCcHHHhChhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008836 161 IHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS 240 (551)
Q Consensus 161 vhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~f~~ 240 (551)
.|||++..||||||.|||+|++++++++++||+|++||+|||+|||++|++||+|++.+++..|||+.+.+.++.++|+.
T Consensus 332 ~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~iTt~L~~~~~~~~w~w~~~~~~~~~~~f~~ 411 (627)
T COG3158 332 RHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLA 411 (627)
T ss_pred EecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChheeehhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHHhcCCCCCcccceeEEEeecCCCC
Q 008836 241 VELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNELVQG 320 (551)
Q Consensus 241 ie~~f~sa~l~Kv~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~~~~~ 320 (551)
+|..||+||+.|++||||+|+++|++++++|.||++|+++.+++..++++|++.+++.+++.++.|||||++|+|+..+.
T Consensus 412 id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~tW~~g~~~l~~~~~~~~i~l~~fi~~l~~~~p~~v~gTAVfLt~~~~~ 491 (627)
T COG3158 412 IDILFFAANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILFEKTRENGIPLDAFIASLEKHPPVRVPGTAVFLTRDPDV 491 (627)
T ss_pred HHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCCHHHHHHHHhhCCCcccCceEEEEcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHHHHHH
Q 008836 321 IPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVASLEK 400 (551)
Q Consensus 321 vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~~f~~~l~~~L~~ 400 (551)
+|.++.|++|||+++||++||+++++.++|+|+++||+.++++++ +++|++++|||||+|+. ++
T Consensus 492 vP~aLlhnlkhnkvlhe~nv~ltv~t~~~P~v~~~~r~~ve~l~~---~f~rV~l~~Gfme~pnv-p~------------ 555 (627)
T COG3158 492 VPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSD---DFVRVVLHFGFMETPNV-PR------------ 555 (627)
T ss_pred CcHHHHHHhhhhheeeeeEEEEEEEecCCCCCCccceeeeeeccC---ceEEEEEEeeccCCCCH-HH------------
Confidence 999999999999999999999999999999999999999999998 59999999999999885 21
Q ss_pred HHHHhhhhHHhhhccccCccccccccCCCCCCCCCCCccccccccccccccccCCCCCCccccccccCCCcCCCCCccHH
Q 008836 401 FLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRFDESGTSASEETTSALPSSVMALDEDPSLE 480 (551)
Q Consensus 401 FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~~~~~~~~v~ 480 (551)
..+.... ++-. .
T Consensus 556 ~l~~~~~------~G~~------------------------------------------------f-------------- 567 (627)
T COG3158 556 ALRLCRK------KGLK------------------------------------------------F-------------- 567 (627)
T ss_pred HHHHHhh------cCce------------------------------------------------e--------------
Confidence 1211100 0000 0
Q ss_pred HHHHHHHHHHhCCcEEEeeecEEEecCCCChhHHHHHHHHHHHHhhhccCCcccccCCCCCeEEeeeEEEC
Q 008836 481 YELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 551 (551)
Q Consensus 481 ~El~~L~~A~eaGVvYIlG~s~vkAr~~Ss~lKKivIn~~Y~FLRkNcR~~~~~L~IPh~~LlEVGmvy~v 551 (551)
.-....|.+|++.+++++.|++.+ +.. ..|..|.||.-++...++||.+|++|+|--.||
T Consensus 568 ---------~im~tsFfl~re~l~~~~~~g~~~-w~~-~lfi~l~r~aa~~~~~F~lp~~rvvElGtqveI 627 (627)
T COG3158 568 ---------DIMETSFFLSRESLIASKNSGMPR-WRD-RLFIALARNAASPTDYFKLPPNRVVELGTQVEI 627 (627)
T ss_pred ---------cccceEEEEEeeeeecCCCCCchH-HHH-HHHHHHHHhcCCHHHhhCCCCCcEEEeeeeeeC
Confidence 001357999999999999999876 444 699999999999999999999999999966554
No 9
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=69.28 E-value=14 Score=40.87 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=13.6
Q ss_pred chhh-hccceehhccchhhhh
Q 008836 47 DAWS-ALGGCVLCITGAEAMF 66 (551)
Q Consensus 47 ~g~~-~LG~V~L~iTG~EALy 66 (551)
.+|. .+..++.+.+|-|+.=
T Consensus 235 ~~~~~a~~~~~~af~G~e~~~ 255 (501)
T TIGR00911 235 GGIVLAFYSGIWAYGGWNYLN 255 (501)
T ss_pred HHHHHHHHHHHHHHHhHHHHh
Confidence 3444 5677788888888653
No 10
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=68.28 E-value=52 Score=34.13 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=52.5
Q ss_pred HhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHhHhcccCCcc---------HHHHHH
Q 008836 198 ANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS----VELLYMSAVLSKIAEGGW---------LPLAFA 264 (551)
Q Consensus 198 ~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~~~~~~f~~----ie~~f~sa~l~Kv~~GGW---------~pl~ia 264 (551)
=..||.+|..+.++.++-++..+..+.+.+++.++++.++++. +|-..+|+.-.+-..+.. +-+++|
T Consensus 15 ~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvlia 94 (301)
T PF14362_consen 15 YAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIA 94 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999988888888898887777666655554 565555543322221122 233444
Q ss_pred HHHHHHHHHhhhhHHHH
Q 008836 265 SVFLCVMYIWNYGSVLK 281 (551)
Q Consensus 265 ~~~~~iM~~W~~G~~~~ 281 (551)
.++...+..+-+..+..
T Consensus 95 ivIs~pl~l~iF~~eI~ 111 (301)
T PF14362_consen 95 IVISEPLELKIFEKEID 111 (301)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555566655444
No 11
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=61.33 E-value=78 Score=34.71 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=25.8
Q ss_pred hhhhccceehhccchhhh--hhccCCCcccceeehhhhhHhHHHHHHhccchhhh
Q 008836 48 AWSALGGCVLCITGAEAM--FADLGHFSVKAIQIAFTLVVFPCLLLAYMGQAAYL 100 (551)
Q Consensus 48 g~~~LG~V~L~iTG~EAL--yADlGHFg~~~Ir~aw~~~V~P~L~l~Y~GQaA~l 100 (551)
++...++++.+.+|-|.. +|+==+-.+|.+-.|=..-+.-+.++-.+++-+..
T Consensus 196 ~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~ 250 (474)
T TIGR03813 196 NVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIA 250 (474)
T ss_pred cHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566788888853 34333445566655544433333333333333333
No 12
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=50.37 E-value=16 Score=37.35 Aligned_cols=39 Identities=21% Similarity=0.637 Sum_probs=31.4
Q ss_pred HHHHHhHhccc------CCccHHHHHHHHHHHHHHHhhhhHHHHH
Q 008836 244 LYMSAVLSKIA------EGGWLPLAFASVFLCVMYIWNYGSVLKY 282 (551)
Q Consensus 244 ~f~sa~l~Kv~------~GGW~pl~ia~~~~~iM~~W~~G~~~~~ 282 (551)
+|||+-..-+. +|||..++++.++..+..+|++--+.+.
T Consensus 243 VFl~~W~~~~~d~~~~i~~G~isiv~Gliiv~iLii~N~kvEv~A 287 (304)
T COG4059 243 VFLSSWVTTVFDPAVSIQGGWISIVAGLIIVLILIIWNRKVEVKA 287 (304)
T ss_pred hhhhhhhhhhcCcccccccchhhhHHHHHHHHHHHHhcchhhhhh
Confidence 56666555554 8999999999999999999998666554
No 13
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=48.51 E-value=79 Score=31.20 Aligned_cols=19 Identities=5% Similarity=0.382 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHhh
Q 008836 257 GWLPLAFASVFLCVMYIWN 275 (551)
Q Consensus 257 GW~pl~ia~~~~~iM~~W~ 275 (551)
+|+-+++|++.+.+-+-|+
T Consensus 180 ~~~~iiig~i~~~~~~~lk 198 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLK 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999888876654
No 14
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=45.43 E-value=4.1e+02 Score=28.33 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=59.9
Q ss_pred hhhccceehhccchhhh--hh-ccCCCcccceeehhhhhHhHHHHHHhccchhhhccCCC-ccc-----Ccccc---ccc
Q 008836 49 WSALGGCVLCITGAEAM--FA-DLGHFSVKAIQIAFTLVVFPCLLLAYMGQAAYLMKYPD-SAN-----RIFYD---SVP 116 (551)
Q Consensus 49 ~~~LG~V~L~iTG~EAL--yA-DlGHFg~~~Ir~aw~~~V~P~L~l~Y~GQaA~l~~~p~-~~~-----npFf~---~~P 116 (551)
...++.++++.+|-|+. +| ++=+ .+|.|-.|-..-..-+.++-.+++.+....-|. +.. +|+.. ...
T Consensus 204 ~~~~~~~~~~f~G~e~~~~~a~E~kn-p~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 282 (466)
T COG0531 204 LAAILLAFFAFTGFEAIATLAEEVKN-PKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGG 282 (466)
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcC
Confidence 44566678899998864 33 2333 445566555443333333333333333333332 111 44432 223
Q ss_pred -CcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCc
Q 008836 117 -DSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPR 157 (551)
Q Consensus 117 -~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr 157 (551)
.+..+-+.+++.+++.-+..+.+.+.--+..+.-+-|++|+
T Consensus 283 g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~ 324 (466)
T COG0531 283 GNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK 324 (466)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 35555566666666666666667777677777778899998
No 15
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=43.69 E-value=96 Score=32.98 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=87.8
Q ss_pred hhhccceehhccchhhhhhccCCCcccceeehhhhhHhHHHHHHhccchhhhccCCCc----ccC------cccccc-cC
Q 008836 49 WSALGGCVLCITGAEAMFADLGHFSVKAIQIAFTLVVFPCLLLAYMGQAAYLMKYPDS----ANR------IFYDSV-PD 117 (551)
Q Consensus 49 ~~~LG~V~L~iTG~EALyADlGHFg~~~Ir~aw~~~V~P~L~l~Y~GQaA~l~~~p~~----~~n------pFf~~~-P~ 117 (551)
+..++..+.+.+|-|+.=.-.+-.-+|.+..|=..-+.-+.++.-+..-++...-|.+ .+| .+++.. .+
T Consensus 191 ~~~~~~~~~~~~G~e~~~~~~~E~k~k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T PF13520_consen 191 LAGFSVAFFAFSGFEAIASLAEENKNKTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGS 270 (426)
T ss_dssp HHHHHHHGGGGTTTTHHHHGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCC
T ss_pred hhHHHHHHhhcccccccccccccccchhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccc
Confidence 4566778889999998665555555566665544333333333223333333332221 112 222322 45
Q ss_pred cchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeEeeCCCccCCccccchHHHHHHHHhh-eee--EEe---
Q 008836 118 SLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCV-VVV--SIF--- 191 (551)
Q Consensus 118 ~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~kivhTS~~~~GQIYIP~vNw~Lmi~~i-~v~--~~F--- 191 (551)
+..+.+.+++.++..-+-.+.+.+.--++.+.-+-|.+|+ +..+++ | +| .|..-.++...+. ++. ..|
T Consensus 271 ~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~-k-~~---~P~~a~~~~~~i~~i~~~~~~~~~~ 344 (426)
T PF13520_consen 271 WLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPK-WFAKVN-K-FG---TPYNAIILVAVISSILLLLFLFIPQ 344 (426)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSG-GGGTTS-S-SS---SCHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred ccccccccccccccccccchhhcchhhcccccccccchhh-hhhhcc-c-cC---CceeeehhhhHHHHHHHHHHHhhhH
Confidence 7778888888887777766767677677777888899994 233333 2 22 2555444443333 222 223
Q ss_pred CCchhHHhhhhchhhhHHHHHH
Q 008836 192 QSTTDIANAYGIAEVGVMLVSS 213 (551)
Q Consensus 192 ~~s~~l~~AYGiaV~~~M~iTT 213 (551)
++-+.+.+.+.+......+++.
T Consensus 345 ~~~~~l~~~~~~~~~~~~~~~~ 366 (426)
T PF13520_consen 345 SSFDILVSLSSVGYLISYILVI 366 (426)
T ss_dssp SHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2335677776666666666653
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=42.06 E-value=3.4e+02 Score=29.26 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=11.0
Q ss_pred hHHHHHHHhCCCCce
Q 008836 144 SCIKQAMALGCFPRL 158 (551)
Q Consensus 144 Si~~Qai~Lg~fPr~ 158 (551)
-+...+-+-|.+|+.
T Consensus 297 R~~~~~a~dg~lP~~ 311 (438)
T PRK10655 297 QVFKSSADEGYFPKI 311 (438)
T ss_pred HHHHHHhcCCchhHH
Confidence 456666788999975
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=41.05 E-value=3.5e+02 Score=29.30 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhCCCCceeEeeCCCccCCccccchHHHHHHHHhh---eeeEEe--CCchhHHhhhhchhhhHHHHHH
Q 008836 142 TFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCV---VVVSIF--QSTTDIANAYGIAEVGVMLVSS 213 (551)
Q Consensus 142 ~FSi~~Qai~Lg~fPr~kivhTS~~~~GQIYIP~vNw~Lmi~~i---~v~~~F--~~s~~l~~AYGiaV~~~M~iTT 213 (551)
.-...+++-+-|.+|+. .-+++| +| .|..-.++...+. ..++.| ..++...++|..-++.+.+.+-
T Consensus 293 ~~r~~~~~ardG~lP~~-f~k~nk--~g---~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 363 (435)
T PRK10435 293 VGQAGVRAANDGNFPKV-YGEVDK--NG---IPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTM 363 (435)
T ss_pred HHHHHHHHHhCCCccHH-HHhhCc--CC---CCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHH
Confidence 33455567788999975 223332 23 7876644422111 111111 2223456778766555554444
No 18
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=39.83 E-value=13 Score=39.08 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=24.8
Q ss_pred cCCCcccceeehhhhhHhHHHHHHhccch-----hhhccCCCccc-Cc
Q 008836 69 LGHFSVKAIQIAFTLVVFPCLLLAYMGQA-----AYLMKYPDSAN-RI 110 (551)
Q Consensus 69 lGHFg~~~Ir~aw~~~V~P~L~l~Y~GQa-----A~l~~~p~~~~-np 110 (551)
=+++||.+|||+|-. ..||+ .=||+|||-+. ||
T Consensus 172 k~Y~GRG~iQlsWNy---------NYG~ag~alg~dLL~~Pe~V~~np 210 (286)
T KOG4742|consen 172 KSYYGRGPIQLSWNY---------NYGAAGKALGLDLLRNPELVAMNP 210 (286)
T ss_pred CcccccCcccccccc---------cccHhHhhcCchhhcCcchhccCc
Confidence 469999999999988 33444 34788999776 44
No 19
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=36.74 E-value=1.7e+02 Score=32.12 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHHHHHHhhhhHHHH
Q 008836 257 GWLPLAFASVFLCVMYIWNYGSVLK 281 (551)
Q Consensus 257 GW~pl~ia~~~~~iM~~W~~G~~~~ 281 (551)
-|.+++++++++..+..|....+|.
T Consensus 454 ny~~~~~~~~~~~~~~~~~~~~r~~ 478 (482)
T TIGR00907 454 NYAVVVFAGVLAISLVYWKYKGRKE 478 (482)
T ss_pred ChHhHHHHHHHHHHHHHheEeceee
Confidence 5999999888888888776543333
No 20
>TIGR00909 2A0306 amino acid transporter.
Probab=34.53 E-value=3.2e+02 Score=29.18 Aligned_cols=106 Identities=16% Similarity=0.029 Sum_probs=47.6
Q ss_pred ccceehhccchhhhhh--ccCCCcccceeehhhhhHhHHHHHHhccchhhhccC-C-C---cccCcccc----cccCcch
Q 008836 52 LGGCVLCITGAEAMFA--DLGHFSVKAIQIAFTLVVFPCLLLAYMGQAAYLMKY-P-D---SANRIFYD----SVPDSLF 120 (551)
Q Consensus 52 LG~V~L~iTG~EALyA--DlGHFg~~~Ir~aw~~~V~P~L~l~Y~GQaA~l~~~-p-~---~~~npFf~----~~P~~~~ 120 (551)
+...+.+.+|-|+.-. +-=+-.+|.+.+|-..-+. ...+.|+.-....... | + +.++|+.. ...++.-
T Consensus 201 ~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~-~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (429)
T TIGR00909 201 TALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLI-VVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGG 279 (429)
T ss_pred HHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHH-HHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHH
Confidence 4445667778887643 3333445666666543222 2222244332222111 1 1 12233322 2223333
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCce
Q 008836 121 WPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRL 158 (551)
Q Consensus 121 ~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ 158 (551)
+-+.+.+.++..-+..+.+.+.=-+....-+.|.+|+.
T Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~ 317 (429)
T TIGR00909 280 LILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS 317 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 33444444444444444444444444445578999973
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=33.59 E-value=2.7e+02 Score=30.59 Aligned_cols=43 Identities=9% Similarity=-0.062 Sum_probs=24.0
Q ss_pred cCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCce
Q 008836 116 PDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRL 158 (551)
Q Consensus 116 P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ 158 (551)
.++...-+.+.+.+++.-+..+.+.+.=-+..+.-+-|.+|+.
T Consensus 279 g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~ 321 (473)
T TIGR00905 279 GKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKI 321 (473)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 3333333333344444444455556665666666688999974
No 22
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=33.54 E-value=34 Score=38.10 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=56.8
Q ss_pred HhCCCCceeEeeCCCccCC----ccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHH-----
Q 008836 151 ALGCFPRLKIIHTSRKRMG----QIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVML----- 221 (551)
Q Consensus 151 ~Lg~fPr~kivhTS~~~~G----QIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~----- 221 (551)
+-|-.||+-+...=++..| |+|+|.+= ++ .+.=|-.-=|-++-.+=-.+++|.+..+||++...=.-
T Consensus 225 sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~L---iV-ilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS 300 (459)
T KOG3643|consen 225 STGNYSRLSLSFQLRRNIGFYILQTYIPSTL---IV-ILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS 300 (459)
T ss_pred ccccceeEEEEEEEEeeccEEEEeeecchhh---hh-HHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc
Confidence 3788999999988888888 99999862 11 11111222345555666889999999999998765221
Q ss_pred HHHhhhhHHHHHHHHHHHH-HHHH
Q 008836 222 LIWQTNLLLVLCFPLVFGS-VELL 244 (551)
Q Consensus 222 ~vw~~~~~~~~~~~~~f~~-ie~~ 244 (551)
+|--.-+.+.+.|..+|++ +|-+
T Consensus 301 YVKAiDiYL~vCFvfVF~sLLEYA 324 (459)
T KOG3643|consen 301 YVKAIDVYLGVCFVFVFLSLLEYA 324 (459)
T ss_pred ceeeehhhhhHHHHHHHHHHHHHH
Confidence 1222334455566666655 4443
No 23
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=32.43 E-value=6.3e+02 Score=28.74 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=32.3
Q ss_pred hhhchhhHHH---HHHHhCCCCce-eEeeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchh
Q 008836 138 MISATFSCIK---QAMALGCFPRL-KIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAE 205 (551)
Q Consensus 138 ~Isg~FSi~~---Qai~Lg~fPr~-kivhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV 205 (551)
+.+..++..| ..-+-|.+|+. .-+|...+ .|...-++...+.++...+.+.+.+.+...++.
T Consensus 329 l~~~~~~~sRil~amarDGlLP~~fakv~~r~~------tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ 394 (557)
T TIGR00906 329 LLGGMFPLPRVIYAMARDGLLFKWLAQINSKTK------TPINATVVSGAIAALMAFLFDLKALVDLLSIGT 394 (557)
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHhccCCCCC------CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3444444443 34467899974 22232222 677665555444444445556666666544443
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=32.18 E-value=5.1e+02 Score=28.40 Aligned_cols=44 Identities=7% Similarity=-0.203 Sum_probs=28.7
Q ss_pred ccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCce
Q 008836 115 VPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRL 158 (551)
Q Consensus 115 ~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ 158 (551)
..++..+.+.+.+.+++.-+..+.+.++=-+..+.-+-|.+|+.
T Consensus 274 ~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~ 317 (468)
T TIGR03810 274 VGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKY 317 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 34455555555555665656666666666667777788999965
No 25
>PRK15049 L-asparagine permease; Provisional
Probab=29.87 E-value=5.1e+02 Score=28.92 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=17.2
Q ss_pred cceehhccchhhh--hhccCCCcccceeehhh
Q 008836 53 GGCVLCITGAEAM--FADLGHFSVKAIQIAFT 82 (551)
Q Consensus 53 G~V~L~iTG~EAL--yADlGHFg~~~Ir~aw~ 82 (551)
..++.+.+|-|.. .|+==+--+|.|-.|-.
T Consensus 227 ~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~ 258 (499)
T PRK15049 227 QGVVFAFASIEMVGTAAGECKDPQTMVPKAIN 258 (499)
T ss_pred HHHHHHHhhHHHHHHHHHHhcChhhHHHHHHH
Confidence 3467788888853 33333445566655543
No 26
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=29.80 E-value=53 Score=25.19 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCCChH
Q 008836 265 SVFLCVMYIWNYGSVLKYRSEVREKISMD 293 (551)
Q Consensus 265 ~~~~~iM~~W~~G~~~~~~~~~~~~~~~~ 293 (551)
++++.....|.|-++++.++|...+++++
T Consensus 19 ~~~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHccCcc
Confidence 33344445566555555556665566654
No 27
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=27.84 E-value=94 Score=30.91 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=39.4
Q ss_pred ehhhhhHhHHHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHH
Q 008836 79 IAFTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAM 150 (551)
Q Consensus 79 ~aw~~~V~P~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai 150 (551)
+|=+.+=+|||+++|+= +.=+.||.+..| -.+-+--++.|+..=++-||+ +|-+|+.+..-+
T Consensus 88 iAs~llP~PsLVIaYCl--~mqi~~~~~~~~-------~gMsIvcv~~Si~ti~~~~~s-~s~~~~ti~yIi 149 (189)
T PF05313_consen 88 IASLLLPFPSLVIAYCL--SMQIYNPGANNN-------VGMSIVCVIMSIITIIVNSVS-GSSGAYTISYII 149 (189)
T ss_pred HHHHHcCccHHHHHHHH--HheeecCCCcce-------ehhHHHHHHHHHHHHHHHhhh-HhHHHHHHHHHH
Confidence 44455668999999972 222668877666 344444555555555667787 677777666544
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=27.63 E-value=5.3e+02 Score=28.32 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=48.3
Q ss_pred hccceehhccchhhh--hhccCCCcccceeehhhhhHhHHHHHHhccchhhhc--cCCCc---ccCcccccc----cCcc
Q 008836 51 ALGGCVLCITGAEAM--FADLGHFSVKAIQIAFTLVVFPCLLLAYMGQAAYLM--KYPDS---ANRIFYDSV----PDSL 119 (551)
Q Consensus 51 ~LG~V~L~iTG~EAL--yADlGHFg~~~Ir~aw~~~V~P~L~l~Y~GQaA~l~--~~p~~---~~npFf~~~----P~~~ 119 (551)
.+..++.+.+|-|+. .|.==+-.+|.|..|-.. +.-...+.|+-....+. ..+++ .++||-... -++.
T Consensus 216 ~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~-~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 294 (469)
T PRK11049 216 GFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINS-IPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAA 294 (469)
T ss_pred HHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHH-HHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhH
Confidence 444456677788864 333334556666666532 22233444444333222 12222 235543221 1122
Q ss_pred hHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCce
Q 008836 120 FWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRL 158 (551)
Q Consensus 120 ~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ 158 (551)
..-+.+++.++.+-+..+.+.+.=-+....-+-|.+|+.
T Consensus 295 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~ 333 (469)
T PRK11049 295 ASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA 333 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 222223333333333444444444455555578999964
No 29
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=27.03 E-value=4.1e+02 Score=28.64 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=13.3
Q ss_pred hhhchhhHHHHHHHhCCCCce
Q 008836 138 MISATFSCIKQAMALGCFPRL 158 (551)
Q Consensus 138 ~Isg~FSi~~Qai~Lg~fPr~ 158 (551)
.+.+.--++...-+-|.+||.
T Consensus 295 ~~~~~sR~l~a~ardg~lP~~ 315 (442)
T TIGR00908 295 IIYGYSRQIFALSRAGYLPES 315 (442)
T ss_pred HHHHHHHHHHHHHhcCCccHH
Confidence 344444555556678999974
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=26.76 E-value=6.5e+02 Score=30.98 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=28.7
Q ss_pred hhhhchhhHHHHHHHhCCCCceeEeeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHh
Q 008836 137 AMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIAN 199 (551)
Q Consensus 137 A~Isg~FSi~~Qai~Lg~fPr~kivhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~ 199 (551)
+.+.|+=-+....-+-|.+|..+..-. .+++==.|..-.++..+..++.+.+.+-+.++.
T Consensus 404 a~l~~asRvl~AmArDg~lP~l~~fak---v~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~ 463 (953)
T TIGR00930 404 ASLVSAPRLFQALCKDNIYPFLQFFGK---GYGKNGEPLRAYLLTAFIAEGFILIAELNTIAP 463 (953)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchhhcc---cCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445555555566667789996433211 111112566554444333333333444444443
No 31
>PRK11387 S-methylmethionine transporter; Provisional
Probab=25.51 E-value=6.5e+02 Score=27.61 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=15.1
Q ss_pred ccceehhccchhhh--hhccCCCcccceeehh
Q 008836 52 LGGCVLCITGAEAM--FADLGHFSVKAIQIAF 81 (551)
Q Consensus 52 LG~V~L~iTG~EAL--yADlGHFg~~~Ir~aw 81 (551)
+..++.+.+|-|.. .|+==+-.+|.|-.|-
T Consensus 212 ~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi 243 (471)
T PRK11387 212 MVAVNFAFSGTELIGIAAGETENPAKVIPVAI 243 (471)
T ss_pred HHHHHHHHcCHHHHHHHHHHhcChhhHHHHHH
Confidence 33456677777753 2222234455555553
No 32
>PRK10746 putative transport protein YifK; Provisional
Probab=24.90 E-value=8.7e+02 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHHHhhhhHHHH
Q 008836 257 GWLPLAFASVFLCVMYIWNYGSVLK 281 (551)
Q Consensus 257 GW~pl~ia~~~~~iM~~W~~G~~~~ 281 (551)
.......+.+++.+++.+....+.-
T Consensus 427 ~~~~~~~~~~~~~~~~~~y~~~~~~ 451 (461)
T PRK10746 427 TRMSLFVGIIFLLAVTLIYKVFGLN 451 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777888777777776655443
No 33
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.28 E-value=25 Score=37.22 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHh--hhhHHHHHHHHHHHHHHHHHHHHhHhcccCCccHHHHHHH---HHHHHHHHhhhhHHHHH
Q 008836 220 MLLIWQ--TNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFAS---VFLCVMYIWNYGSVLKY 282 (551)
Q Consensus 220 ~~~vw~--~~~~~~~~~~~~f~~ie~~f~sa~l~Kv~~GGW~pl~ia~---~~~~iM~~W~~G~~~~~ 282 (551)
|.+.|+ -++|..+.|++-|+.-=++...|.+. +=.||++++-. ++|.-.++|-|-+....
T Consensus 126 m~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L---~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLAFLLAIVLLIIAVLL---HQAWFTILVDLYWLLLFLAILIWLYVHDQRH 190 (381)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444455 47788888887776554555556554 56899998764 56777789998776653
No 34
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.15 E-value=2.9e+02 Score=31.22 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=14.0
Q ss_pred hhhhchhhhHHHHHHHHHH
Q 008836 199 NAYGIAEVGVMLVSSTLVT 217 (551)
Q Consensus 199 ~AYGiaV~~~M~iTT~L~~ 217 (551)
..||+++...+++..++..
T Consensus 24 ~~YGl~ialGil~a~~l~~ 42 (460)
T PRK13108 24 RAYAVCVITGIIVALLIGD 42 (460)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6899988888887655543
No 35
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=23.40 E-value=18 Score=35.55 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=46.4
Q ss_pred HHHHHhCCcE-EEeeecEEEecCCCChhHHHHHHHHHHHH---hhhccCCcccccCCCCCeEEeee
Q 008836 486 LREAIDSGFT-YLLAHGDVRAKKKSFFLKKLVINYFYAFL---RRNCRAGAANMSVPHMNILQVGM 547 (551)
Q Consensus 486 L~~A~eaGVv-YIlG~s~vkAr~~Ss~lKKivIn~~Y~FL---RkNcR~~~~~L~IPh~~LlEVGm 547 (551)
+++++++|+- +|..+ .+.++=-.+..|+-+|++|.-. ++..|.....+++|.++.+-||-
T Consensus 55 ~~e~k~~gi~v~vvSN--n~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 55 LAELKEAGIKVVVVSN--NKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred HHHHHhcCCEEEEEeC--CCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcc
Confidence 4567777875 44444 5566666788899999888774 67888889999999999999984
No 36
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=22.76 E-value=1e+02 Score=27.68 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=22.0
Q ss_pred eEEEEEecCCCCcEEEEEEEEeeecccc
Q 008836 357 RFLFRRVGPKDYHMFRCVTRYGYKDVRK 384 (551)
Q Consensus 357 R~~v~~~~~~~~~~~r~~~ryGy~d~~~ 384 (551)
-+.+..+...+.|.|+|.+.+|.-|+..
T Consensus 75 sL~I~nl~~sDsG~Y~C~V~~g~~~~~~ 102 (112)
T cd05900 75 TLEITELRSNDSGTYRCEVMHGIEDNYD 102 (112)
T ss_pred EEEEeecccccCEEEEEEEecCCCCcee
Confidence 4566677777789999999999887643
No 37
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=22.41 E-value=4.8e+02 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCC
Q 008836 260 PLAFASVFLCVMYIWNYGSVLKYRSEVREKI 290 (551)
Q Consensus 260 pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~ 290 (551)
..++|+++++.|..|-..+.++++.+.++++
T Consensus 79 ~~lvAv~~l~~m~~Wm~~~~~~~~~~i~~~~ 109 (283)
T TIGR00145 79 FGVIAVVMLSYMGLWMLRMQRKWRVKIERQL 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999876677766665544
No 38
>PRK14417 membrane protein; Provisional
Probab=22.27 E-value=5.8e+02 Score=26.34 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.7
Q ss_pred EeCCchhHHhhhhchhh
Q 008836 190 IFQSTTDIANAYGIAEV 206 (551)
Q Consensus 190 ~F~~s~~l~~AYGiaV~ 206 (551)
.||-...+|-+-|+...
T Consensus 101 ~FKGGKGVAt~~Gvll~ 117 (232)
T PRK14417 101 RFNGGRGIATSLGVALV 117 (232)
T ss_pred CCcChhHHHHHHHHHHH
Confidence 59999988888887644
No 39
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=21.46 E-value=8.5e+02 Score=24.61 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=72.2
Q ss_pred CCCCceeEeeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008836 153 GCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVL 232 (551)
Q Consensus 153 g~fPr~kivhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~vw~~~~~~~~ 232 (551)
....|+++.+--+...|..+-+.+.-.+.+.|..++.-+....+...-..++++...+...++..+. |+|.+..+
T Consensus 78 r~~~k~~~~re~~p~i~~~~s~ll~~~~~i~s~~~~~~i~~~~~~~~~~~l~~a~~lf~iGl~~~i~-----Rrn~i~~i 152 (216)
T PRK11492 78 YAARKLGDNIEEEPVFGPAMSILLAALIVLLCAFVVQPVKLPMALGLKPALAVSLGHFLLGLLCIVS-----QRNILKQI 152 (216)
T ss_pred HHHHHhCCccccccccchHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHH
Confidence 3456677765666667777777777777777777776665555555455666666666665555332 45544433
Q ss_pred HHHHHHHHHHH-HHH--HHhHhccc----CCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCChHHHHH
Q 008836 233 CFPLVFGSVEL-LYM--SAVLSKIA----EGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLD 297 (551)
Q Consensus 233 ~~~~~f~~ie~-~f~--sa~l~Kv~----~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~ 297 (551)
. .|..+|- +++ .+.....| -|-=.-.+++.+++.+.. ..-++..+.++.|++.+
T Consensus 153 i---g~~~meNgv~L~~~~~~~~~p~~VE~g~~~d~l~av~i~~i~a--------~~i~r~~~sid~~~l~~ 213 (216)
T PRK11492 153 F---GYCLMENGSHLTLALLAYNAPELVEIGIATDAIFAVIIMVLLA--------RKIYRTHGTLDVNKLTA 213 (216)
T ss_pred H---HHHHHHHHHHHHHHHHHhhcchhhhccccccHHHHHHHHHHHH--------HHHHHhcCCCcHHHHHh
Confidence 2 2333332 222 22222333 144566777777777777 22223445677776654
No 40
>PRK11021 putative transporter; Provisional
Probab=21.45 E-value=1e+03 Score=25.43 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=18.5
Q ss_pred ccceehhccchhhh--hhccCCCcccceeehhhh
Q 008836 52 LGGCVLCITGAEAM--FADLGHFSVKAIQIAFTL 83 (551)
Q Consensus 52 LG~V~L~iTG~EAL--yADlGHFg~~~Ir~aw~~ 83 (551)
+...+.+.+|-|+. +|+==+-.+|.+..|=..
T Consensus 183 ~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~ 216 (410)
T PRK11021 183 LGVMFWCFVGIEAFAHLASEFKNPERDFPRALMI 216 (410)
T ss_pred HHHHHHHHhcHHHHHhhHHhccCccccccHHHHH
Confidence 44456678888865 333334456666665544
No 41
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=21.18 E-value=1.1e+03 Score=25.81 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHhhhhhhhchhhHHHHHHHhCCCCc---eeEeeCC
Q 008836 130 AAMIASQAMISATFSCIKQAMALGCFPR---LKIIHTS 164 (551)
Q Consensus 130 AtIIASQA~Isg~FSi~~Qai~Lg~fPr---~kivhTS 164 (551)
+...+..+.+.++=-++...-+-|.+|. +.-+|..
T Consensus 308 ~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r 345 (475)
T TIGR03428 308 AILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPR 345 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCC
Confidence 3333334444444455555667899996 5545543
No 42
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=20.97 E-value=2.5e+02 Score=28.08 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=29.7
Q ss_pred HHHhheeeEEeCCchhHHhhh--hchhhhHHHHHHHHHHHHHHHH
Q 008836 181 MIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 223 (551)
Q Consensus 181 mi~~i~v~~~F~~s~~l~~AY--GiaV~~~M~iTT~L~~~v~~~v 223 (551)
+.-.+.++-...-|+++.||- |+||+.||.+++.+..++-..+
T Consensus 19 l~~~LG~Cp~laVs~~~~~a~gmGlav~fV~~~s~~~~~~i~~~i 63 (193)
T PRK05151 19 LVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASICAWLVNTYI 63 (193)
T ss_pred HHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455566777766 6789999999999988877655
No 43
>PRK10249 phenylalanine transporter; Provisional
Probab=20.75 E-value=1e+03 Score=26.11 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=21.9
Q ss_pred hhhccceehhccchhhh--hhccCCCcccceeehhh
Q 008836 49 WSALGGCVLCITGAEAM--FADLGHFSVKAIQIAFT 82 (551)
Q Consensus 49 ~~~LG~V~L~iTG~EAL--yADlGHFg~~~Ir~aw~ 82 (551)
+..+..++.+.+|-|+. .|+=-+-.+|.|-.|=.
T Consensus 212 ~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 212 ILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 34566677888899865 55555566666655543
No 44
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=20.55 E-value=3e+02 Score=27.70 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=29.1
Q ss_pred HHHhheeeEEeCCchhHHhhh--hchhhhHHHHHHHHHHHHHHHH
Q 008836 181 MIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 223 (551)
Q Consensus 181 mi~~i~v~~~F~~s~~l~~AY--GiaV~~~M~iTT~L~~~v~~~v 223 (551)
+.-.+.++-...-|+++.||- |+||+.||.+++.+..++-..+
T Consensus 18 l~~~LGlCp~l~vs~~~~~a~gmGlAvtfV~~~s~~~~~~i~~~i 62 (200)
T TIGR01940 18 LSFFLGMCTFLAVSKKVSTAFGLGVAVTFVLTITVPINNLIYTYI 62 (200)
T ss_pred HHHHHhcCchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455566666665 6788999999999888876654
No 45
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=20.53 E-value=6.2e+02 Score=22.67 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=13.4
Q ss_pred ccCcchHHHHHHHHHHHH
Q 008836 115 VPDSLFWPVFVLAALAAM 132 (551)
Q Consensus 115 ~P~~~~~P~~vlAtlAtI 132 (551)
-|++-+||..+...++..
T Consensus 31 ~~gp~~fP~~l~~~l~~~ 48 (141)
T PF07331_consen 31 SPGPGFFPRLLGILLLIL 48 (141)
T ss_pred CCCChHHHHHHHHHHHHH
Confidence 688899998776666543
No 46
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=20.08 E-value=3.6e+02 Score=26.70 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=28.9
Q ss_pred HHHhheeeEEeCCchhHHhh--hhchhhhHHHHHHHHHHHHHHHH
Q 008836 181 MIMCVVVVSIFQSTTDIANA--YGIAEVGVMLVSSTLVTIVMLLI 223 (551)
Q Consensus 181 mi~~i~v~~~F~~s~~l~~A--YGiaV~~~M~iTT~L~~~v~~~v 223 (551)
+.-.+.++-...-|+++.|| -|+||+.+|++++.+..++=.++
T Consensus 19 l~~~LGlcp~l~vs~~~~~a~~mGlav~~V~~~s~~~~~~l~~~i 63 (190)
T PF02508_consen 19 LVQFLGLCPFLAVSTSLENALGMGLAVTFVLTLSSVLISLLRNFI 63 (190)
T ss_pred HHHHHHhcchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555 56788999999999998887766
Done!