Query 008836
Match_columns 551
No_of_seqs 199 out of 820
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 91.6 4 0.00014 42.6 15.9 34 47-80 202-237 (511)
2 3gia_A Uncharacterized protein 90.8 1.2 4E-05 45.8 10.7 61 145-212 298-358 (444)
3 3l1l_A Arginine/agmatine antip 86.4 4.3 0.00015 41.5 11.3 17 50-66 195-211 (445)
4 2bm3_A Type 2 cohesin, scaffol 31.4 13 0.00044 34.8 0.7 12 23-34 44-55 (166)
5 3kcp_B Cellulosome anchoring p 29.7 14 0.00048 34.9 0.7 8 25-32 58-65 (187)
6 2l6p_A PHAC1, PHAC2 and PHAD g 26.9 24 0.00082 31.2 1.6 22 521-544 30-51 (124)
7 2od6_A Hypothetical protein; m 23.0 1.1E+02 0.0039 25.5 4.9 32 357-394 46-77 (110)
8 3luu_A Uncharacterized protein 21.9 28 0.00096 29.3 1.1 18 519-536 33-50 (101)
9 2l6n_A Uncharacterized protein 20.7 37 0.0013 30.4 1.6 16 520-535 36-51 (132)
10 3ghp_A Cellulosomal scaffoldin 18.8 31 0.001 33.6 0.7 13 22-34 46-58 (227)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=91.59 E-value=4 Score=42.63 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=21.5
Q ss_pred chhhhccceehhccchhhhhhccCCCc--ccceeeh
Q 008836 47 DAWSALGGCVLCITGAEAMFADLGHFS--VKAIQIA 80 (551)
Q Consensus 47 ~g~~~LG~V~L~iTG~EALyADlGHFg--~~~Ir~a 80 (551)
.+|..+..++.+.+|-|+.-.=-+-.- +|.+..|
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 456677888999999998644333332 3444444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=90.79 E-value=1.2 Score=45.84 Aligned_cols=61 Identities=8% Similarity=0.053 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCceeEeeCCCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHH
Q 008836 145 CIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVS 212 (551)
Q Consensus 145 i~~Qai~Lg~fPr~kivhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iT 212 (551)
+....-+-|.+|+.= -++++ ++ |...-++......+...+-+-+.+.+.++++...+..++
T Consensus 298 ~l~a~a~dg~lP~~f-~~~~~--~~----P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 358 (444)
T 3gia_A 298 VAYSLAKDGELPEFF-ERKVW--FK----STEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFV 358 (444)
T ss_dssp HHHHHHHHSSCCSSC-CTTSC--CS----CTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHH-hCCCC--CC----CcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 444555789999641 12221 22 553332222222222223456677777766665555443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=86.42 E-value=4.3 Score=41.46 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=11.6
Q ss_pred hhccceehhccchhhhh
Q 008836 50 SALGGCVLCITGAEAMF 66 (551)
Q Consensus 50 ~~LG~V~L~iTG~EALy 66 (551)
..+...+.+.+|-|+.-
T Consensus 195 ~~~~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 195 STLNVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHHHHTTTTTTHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 34555677888999753
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=31.44 E-value=13 Score=34.77 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=6.8
Q ss_pred cCCcceeeecCh
Q 008836 23 KYDISVVRAFNP 34 (551)
Q Consensus 23 ~~~p~Vl~AlnP 34 (551)
+|||+||+|.||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 455555555555
No 5
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=29.73 E-value=14 Score=34.95 Aligned_cols=8 Identities=38% Similarity=0.343 Sum_probs=2.8
Q ss_pred Ccceeeec
Q 008836 25 DISVVRAF 32 (551)
Q Consensus 25 ~p~Vl~Al 32 (551)
||+||+|+
T Consensus 58 DP~VLqaV 65 (187)
T 3kcp_B 58 DPKVLMAV 65 (187)
T ss_dssp CTTTEEEE
T ss_pred ChhHeeec
Confidence 33333333
No 6
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=26.85 E-value=24 Score=31.19 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=15.4
Q ss_pred HHHHhhhccCCcccccCCCCCeEE
Q 008836 521 YAFLRRNCRAGAANMSVPHMNILQ 544 (551)
Q Consensus 521 Y~FLRkNcR~~~~~L~IPh~~LlE 544 (551)
|.|||.||+++...-. .+++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999765543 555543
No 7
>2od6_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE OHA; 1.85A {Uncultured marine organism} SCOP: d.58.4.22
Probab=22.97 E-value=1.1e+02 Score=25.52 Aligned_cols=32 Identities=41% Similarity=0.640 Sum_probs=24.0
Q ss_pred eEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHH
Q 008836 357 RFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLL 394 (551)
Q Consensus 357 R~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~~f~~~l 394 (551)
+|...|+-.++ .+||++..|-|+|. ..||..+
T Consensus 46 kfsmnrvwnkg-evfrvvmtyeykdr-----asfeani 77 (110)
T 2od6_A 46 KFSMNRVWNKG-EVFRVVMTYEYKDR-----ASFEANI 77 (110)
T ss_dssp EEEEEEECSSS-SCEEEEEEEEESSH-----HHHHHHH
T ss_pred hhhhhhhccCC-cEEEEEEEEEeccc-----hhhhhhh
Confidence 46777776665 69999999999986 4566543
No 8
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=21.92 E-value=28 Score=29.31 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=10.8
Q ss_pred HHHHHHhhhccCCccccc
Q 008836 519 YFYAFLRRNCRAGAANMS 536 (551)
Q Consensus 519 ~~Y~FLRkNcR~~~~~L~ 536 (551)
+=|.|||.||+.+...-.
T Consensus 33 ~~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 33 LTFEHLRVECPCAECKGH 50 (101)
T ss_dssp EEHHHHHHTCCCC-----
T ss_pred ECHHHHHhhCCChhhcCc
Confidence 347899999997665443
No 9
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=20.70 E-value=37 Score=30.39 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=12.5
Q ss_pred HHHHHhhhccCCcccc
Q 008836 520 FYAFLRRNCRAGAANM 535 (551)
Q Consensus 520 ~Y~FLRkNcR~~~~~L 535 (551)
=|.|||.||+.+...-
T Consensus 36 ~~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 36 SCELLRVYSPSAEVHG 51 (132)
T ss_dssp EHHHHHHSCSCSSSSS
T ss_pred CHHHHHhcCCCcccCC
Confidence 3689999999876543
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=18.83 E-value=31 Score=33.58 Aligned_cols=13 Identities=54% Similarity=0.981 Sum_probs=0.0
Q ss_pred hcCCcceeeecCh
Q 008836 22 VKYDISVVRAFNP 34 (551)
Q Consensus 22 ~~~~p~Vl~AlnP 34 (551)
++|||.||+|.||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
Done!