Query 008836
Match_columns 551
No_of_seqs 199 out of 820
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 12:51:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008836.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008836hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 28.7 13 0.00092 32.7 2.4 118 87-217 12-131 (173)
2 d2bm3a1 b.2.2.2 (A:5-166) Scaf 26.7 8.1 0.00059 33.8 0.7 11 24-34 41-51 (162)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 19.0 34 0.0025 20.9 2.2 20 257-276 5-24 (27)
4 d1or7a2 a.177.1.1 (A:-1-111) S 15.6 36 0.0027 26.3 2.4 24 509-532 73-96 (113)
5 d2h8pc1 f.14.1.1 (C:22-78) Pot 15.1 21 0.0015 25.9 0.7 39 88-128 16-54 (57)
6 d1f2qa2 b.1.1.4 (A:86-174) IgE 8.3 91 0.0066 22.8 2.4 31 353-383 46-76 (89)
7 d1iray2 b.1.1.4 (Y:102-204) Ty 8.2 85 0.0062 24.0 2.3 26 355-380 57-82 (103)
8 d2a65a1 f.54.1.1 (A:5-513) Na( 8.0 2.3E+02 0.017 27.3 6.1 26 259-284 406-431 (509)
9 d1krha2 c.25.1.2 (A:206-338) B 7.5 1.3E+02 0.0094 23.4 3.2 41 139-179 17-57 (133)
10 d1ug8a_ d.68.7.1 (A:) Poly(A)- 6.9 89 0.0064 24.4 1.7 21 386-406 8-28 (87)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=28.73 E-value=13 Score=32.73 Aligned_cols=118 Identities=11% Similarity=0.104 Sum_probs=66.2
Q ss_pred HHHHHHhccc--hhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCCceeEeeCC
Q 008836 87 PCLLLAYMGQ--AAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHTS 164 (551)
Q Consensus 87 P~L~l~Y~GQ--aA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~kivhTS 164 (551)
|-|+++.+|+ +|+++.+-|+.-+-+ +-=..+.|+ ++-++.-++||+.. ++-+++++|.+-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~---~~La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAV---TALAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTT---TSCCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4455555554 466666544333221 112356676 67788889999874 888999999643211 11
Q ss_pred CccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHH
Q 008836 165 RKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVT 217 (551)
Q Consensus 165 ~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~ 217 (551)
+...-++.+-.+|=+.+...+.....+.+...++-+=|++...+|.+.+++=+
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~ 131 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGA 131 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234566677776666555444444555555555555555555555554433
No 2
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=26.72 E-value=8.1 Score=33.77 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=4.5
Q ss_pred CCcceeeecCh
Q 008836 24 YDISVVRAFNP 34 (551)
Q Consensus 24 ~~p~Vl~AlnP 34 (551)
|||.||+|.||
T Consensus 41 YDP~vLQ~Vn~ 51 (162)
T d2bm3a1 41 YDPKVLMAVDP 51 (162)
T ss_dssp CCTTTEEEECT
T ss_pred eCHHHhccccc
Confidence 34444444433
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.02 E-value=34 Score=20.85 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHHHHHHHhhh
Q 008836 257 GWLPLAFASVFLCVMYIWNY 276 (551)
Q Consensus 257 GW~pl~ia~~~~~iM~~W~~ 276 (551)
||+.|+.-+.-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777788888854
No 4
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=15.62 E-value=36 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHHhhhccCCc
Q 008836 509 SFFLKKLVINYFYAFLRRNCRAGA 532 (551)
Q Consensus 509 Ss~lKKivIn~~Y~FLRkNcR~~~ 532 (551)
.+|+.+++-|.+.+++|++.|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998654
No 5
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.08 E-value=21 Score=25.86 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=25.1
Q ss_pred HHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHH
Q 008836 88 CLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAA 128 (551)
Q Consensus 88 ~L~l~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAt 128 (551)
++++--++=+.|+..+.. .+.-|.++|+.++|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 444444555667776643 334599999999997665443
No 6
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.31 E-value=91 Score=22.77 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=24.1
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeeccc
Q 008836 353 RLEERFLFRRVGPKDYHMFRCVTRYGYKDVR 383 (551)
Q Consensus 353 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~ 383 (551)
....++.+..+...+-|.|+|.++.|+.+..
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~ 76 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDYE 76 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence 3445688888888888999999998876543
No 7
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=85 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=21.1
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeee
Q 008836 355 EERFLFRRVGPKDYHMFRCVTRYGYK 380 (551)
Q Consensus 355 ~eR~~v~~~~~~~~~~~r~~~ryGy~ 380 (551)
+..+.+..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45677888888888999999988664
No 8
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=7.99 E-value=2.3e+02 Score=27.33 Aligned_cols=26 Identities=12% Similarity=0.497 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008836 259 LPLAFASVFLCVMYIWNYGSVLKYRS 284 (551)
Q Consensus 259 ~pl~ia~~~~~iM~~W~~G~~~~~~~ 284 (551)
+.+.+.+.+.++...|.||.++..+.
T Consensus 406 ~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 406 IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 56677788889999999999887654
No 9
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=7.55 E-value=1.3e+02 Score=23.40 Aligned_cols=41 Identities=7% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhchhhHHHHHHHhCCCCceeEeeCCCccCCccccchHHHH
Q 008836 139 ISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWF 179 (551)
Q Consensus 139 Isg~FSi~~Qai~Lg~fPr~kivhTS~~~~GQIYIP~vNw~ 179 (551)
||-..|+++++.+.+.-++++++|..+....-+|--++..+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l 57 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHH
No 10
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.86 E-value=89 Score=24.35 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHhh
Q 008836 386 DHHVFEQLLVASLEKFLRKEA 406 (551)
Q Consensus 386 ~~~~f~~~l~~~L~~FI~~e~ 406 (551)
|..+|.++++++|.+|++.|.
T Consensus 8 d~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 8 DQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHcCcc
Done!