BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008837
         (551 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8
 pdb|2NTY|B Chain B, Rop4-Gdp-Prone8
 pdb|2WBL|A Chain A, Three-Dimensional Structure Of A Binary Rop-Prone Complex
 pdb|2WBL|B Chain B, Three-Dimensional Structure Of A Binary Rop-Prone Complex
          Length = 365

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/372 (50%), Positives = 259/372 (69%), Gaps = 26/372 (6%)

Query: 97  SEIELMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSASVFGELWKLEPLALRKKMM 156
           +++E+MK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+AS+FGE  KL+P+   ++  
Sbjct: 9   ADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQAR 68

Query: 157 WQREMEWLLCVSDSIVELIPSLQEFPGGGTFEVMVTRPRSDLYVNLPALKKLDTMLVNIL 216
           W++E++WLL V+D IVE +PS Q    G   E+MVTR R DL +N+PAL+KLD ML++ L
Sbjct: 69  WKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTL 128

Query: 217 EGFR-EAEFCYVDRGLIVGGGGDDTKTFPSCSSSSRPFAGPEEKWWLPFPMVPPNGLSEN 275
           + FR   EF YV R    G    + +T               +KWWLP   VPP GLSE 
Sbjct: 129 DNFRGHNEFWYVSRDSEEGQQARNDRT--------------NDKWWLPPVKVPPGGLSEP 174

Query: 276 MRERLQQARECTSQILKAAMAINSNVLAEMEIPNAYLESLPKSGKECLGEIMYNYITADQ 335
            R  L   ++  +Q+ KAAMAIN+ VL+EMEIP +Y++SLPK+G+  LG+ +Y  IT + 
Sbjct: 175 SRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEW 234

Query: 336 FSPESLLAYLDLSSEYTTLEIANRIEAAVHIWRQKYQNKRIIRTKSGRSSWGGKVKGFVS 395
           F PE  LA LD+S+E+  L++ NRIEA+V IW      KR + TK  +SSWG  V     
Sbjct: 235 FDPEQFLAMLDMSTEHKVLDLKNRIEASVVIW------KRKLHTKDTKSSWGSAVS---- 284

Query: 396 DIERSKLLAHRADTILQNLKLRFPSLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFN 455
            +E+ +L   RA+TIL  LK +FP LPQ++LD++KIQ+NKDVGQ++LESYSR++ESLA+ 
Sbjct: 285 -LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYT 343

Query: 456 IMARIDDLLYVD 467
           +M+RI+D+LY D
Sbjct: 344 VMSRIEDVLYTD 355


>pdb|2NTX|A Chain A, Prone8
 pdb|2NTX|B Chain B, Prone8
          Length = 365

 Score =  333 bits (855), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/372 (48%), Positives = 247/372 (66%), Gaps = 26/372 (6%)

Query: 97  SEIELMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSASVFGELWKLEPLALRKKMM 156
           ++ E  K+RFAKLLLGED SGGGKGV +ALA+SNAITNL+AS+FGE  KL+P    ++  
Sbjct: 9   ADXEXXKDRFAKLLLGEDXSGGGKGVSSALALSNAITNLAASIFGEQTKLQPXPQDRQAR 68

Query: 157 WQREMEWLLCVSDSIVELIPSLQEFPGGGTFEVMVTRPRSDLYVNLPALKKLDTMLVNIL 216
           W++E++WLL V+D IVE +PS Q    G   E+ VTR R DL  N+PAL+KLD  L++ L
Sbjct: 69  WKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIXVTRQRGDLLXNIPALRKLDAXLIDTL 128

Query: 217 EGFR-EAEFCYVDRGLIVGGGGDDTKTFPSCSSSSRPFAGPEEKWWLPFPMVPPNGLSEN 275
           + FR   EF YV R    G    + +T               +KWWLP   VPP GLSE 
Sbjct: 129 DNFRGHNEFWYVSRDSEEGQQARNDRT--------------NDKWWLPPVKVPPGGLSEP 174

Query: 276 MRERLQQARECTSQILKAAMAINSNVLAEMEIPNAYLESLPKSGKECLGEIMYNYITADQ 335
            R  L   ++  +Q+ KAA AIN+ VL+E EIP +Y++SLPK+G+  LG+ +Y  IT + 
Sbjct: 175 SRRXLYFQKDSVTQVQKAAXAINAQVLSEXEIPESYIDSLPKNGRASLGDSIYKSITEEW 234

Query: 336 FSPESLLAYLDLSSEYTTLEIANRIEAAVHIWRQKYQNKRIIRTKSGRSSWGGKVKGFVS 395
           F PE  LA LD S+E+  L++ NRIEA+V IW      KR + TK  +SSWG  V     
Sbjct: 235 FDPEQFLAXLDXSTEHKVLDLKNRIEASVVIW------KRKLHTKDTKSSWGSAVS---- 284

Query: 396 DIERSKLLAHRADTILQNLKLRFPSLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFN 455
            +E+ +L   RA+TIL  LK +FP LPQ++LD++KIQ+NKDVGQ++LESYSR++ESLA+ 
Sbjct: 285 -LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYT 343

Query: 456 IMARIDDLLYVD 467
           + +RI+D+LY D
Sbjct: 344 VXSRIEDVLYTD 355


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,848,438
Number of Sequences: 62578
Number of extensions: 587078
Number of successful extensions: 1134
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 3
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)