BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008837
(551 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana
GN=ROPGEF1 PE=1 SV=2
Length = 548
Score = 618 bits (1593), Expect = e-176, Method: Compositional matrix adjust.
Identities = 329/527 (62%), Positives = 394/527 (74%), Gaps = 25/527 (4%)
Query: 1 MASVSSEDGLEEMSERFESYSLSADVSESESSSSGSFSNRHFDSASTFLTSSSLVEPDFD 60
M S+SSE+ E SER SYS SAD+SESESSSS S + AS+ + SS P
Sbjct: 1 MGSLSSEEDDEVSSERCGSYSPSADISESESSSSFSCHRFDGEGASSSIPSS----PRVV 56
Query: 61 DSSGSSEEVPIMLPVVGGRHVVVSVNDTEKIPDSDLSEIELMKERFAKLLLGEDMSGGGK 120
G P+MLPV+GG+ VV +K PD+DLSEIE+MKERFAKLLLGEDMSGGGK
Sbjct: 57 AGRGFYFPAPVMLPVIGGKDVVWD----DKQPDNDLSEIEMMKERFAKLLLGEDMSGGGK 112
Query: 121 GVCTALAISNAITNLSASVFGELWKLEPLALRKKMMWQREMEWLLCVSDSIVELIPSLQE 180
GVCTALAISNAITNLSA+VFGELW+LEPLA +KK MW+RE+EWLLCVSDSIVELIPS+Q+
Sbjct: 113 GVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQ 172
Query: 181 FPGGGTFEVMVTRPRSDLYVNLPALKKLDTMLVNILEGFREAEFCYVDRGLIVGGGGDDT 240
FPGGGT+E+M TRPRSDLY NLPALKKLD ML+++L+ F + EF Y DRG+++G D+
Sbjct: 173 FPGGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDCDKDS 232
Query: 241 KTFPSCSSSSRPFAGPEEKWWLPFPMVPPNGLSENMRERLQQARECTSQILKAAMAINSN 300
P+ E+KWWLP P VPPNGLSE R++LQQ R+ +QILKAA+AINS
Sbjct: 233 YNSPASVRQ-------EDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSG 285
Query: 301 VLAEMEIPNAYLESLPKSGKECLGEIMYNYITADQFSPESLLAYLDLSSEYTTLEIANRI 360
VLAEMEIP+ YLE+LPKSGKECLGEI+Y Y+TA++FSPE LL LDLSSE+ TLEIANRI
Sbjct: 286 VLAEMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRI 345
Query: 361 EAAVHIWRQKYQNKRIIRTKSGRSSWGGKVKGFVSDIERSKLLAHRADTILQNLKLRFPS 420
EAAVH+WRQK + + K SSWGGKVKG V+D ER+ L RA+T+LQ+L++RFP
Sbjct: 346 EAAVHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPG 405
Query: 421 LPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDLLYVDDATKQR-AAAETA 479
LPQT LDMNKIQYNKDVGQSILESYSRVMES+AFNI ARIDD+LYVDDA ++ + E+
Sbjct: 406 LPQTTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVDDAMRRSISVTESL 465
Query: 480 SLYDQTRFNGTIPKQKRILPSPFSLQRSSSTSPFRIPSFYSLVRSPR 526
SL+ NG P++ FS+Q S SPF P+ RSPR
Sbjct: 466 SLFS---INGLNPQKA------FSVQSSPHGSPFATPALSVASRSPR 503
>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana
GN=ROPGEF2 PE=1 SV=2
Length = 485
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/444 (47%), Positives = 294/444 (66%), Gaps = 25/444 (5%)
Query: 32 SSSGSFSNRHFDSASTFLTSSSLVE-PDFDDSSGS-SEEVPIMLPVVGGRHVVVSVNDTE 89
+S G FS++ D S+F T +S + P +S+ S S P + + +H + ++
Sbjct: 52 TSGGGFSDQ-IDETSSFCTEASPSDWPVLTESNNSASSNFPTVFDL---KHNQIETDEHL 107
Query: 90 KIPDSDLSEIELMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSASVFGELWKLEPL 149
+ + E+E MKERF+KLLLGEDMSG GKGVCTA+ ISNAITNL A+VFG+ +LEPL
Sbjct: 108 AVQEISEPELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPL 167
Query: 150 ALRKKMMWQREMEWLLCVSDSIVELIPSLQEFPGGGTFEVMVTRPRSDLYVNLPALKKLD 209
+ +K W+REM LL V D I E IP Q G T EVM +RPR+D+Y+NLPAL+KLD
Sbjct: 168 EIEQKTTWKREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLD 227
Query: 210 TMLVNILEGFREAEFCYVDRGLIVGGGGDDTKTFPSCSSSSRP--FAGPEEKWWLPFPMV 267
+ML+ L+ F++ EF Y + G + K+ S + S R EEKWWLP P+V
Sbjct: 228 SMLMEALDSFQKTEFWYAEEGSL------SMKSTRSATGSFRKVIVQRKEEKWWLPIPLV 281
Query: 268 PPNGLSENMRERLQQARECTSQILKAAMAINSNVLAEMEIPNAYLESLPKSGKECLGEIM 327
P GLSE R++L+ RE T+QI KAAMAINS++L EM+IP++Y+ +LPKSGK G+ +
Sbjct: 282 PLQGLSEKARKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAI 341
Query: 328 YNYITAD-QFSPESLLAYLDLSSEYTTLEIANRIEAAVHIWRQKYQNKRIIRTKSGRSSW 386
Y ++T+ +FSPE LL L + SE+ L++A+R+EA+++ WR+K + +SSW
Sbjct: 342 YRHMTSSGRFSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK------ACLNNSKSSW 395
Query: 387 GGKVKGFVSDIERSK---LLAHRADTILQNLKLRFPSLPQTALDMNKIQYNKDVGQSILE 443
VK +S ERS +LA RA+++L LK R+P L QT+LD+ KI NKDVG+++LE
Sbjct: 396 -NMVKDLMSITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLE 454
Query: 444 SYSRVMESLAFNIMARIDDLLYVD 467
SYSRV+E LAFNI+A IDD+LYVD
Sbjct: 455 SYSRVLEGLAFNIVAWIDDVLYVD 478
>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana
GN=ROPGEF8 PE=1 SV=1
Length = 523
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/386 (50%), Positives = 265/386 (68%), Gaps = 27/386 (6%)
Query: 97 SEIELMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSASVFGELWKLEPLALRKKMM 156
+++E+MK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+AS+FGE KL+P+ ++
Sbjct: 84 ADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQAR 143
Query: 157 WQREMEWLLCVSDSIVELIPSLQEFPGGGTFEVMVTRPRSDLYVNLPALKKLDTMLVNIL 216
W++E++WLL V+D IVE +PS Q G E+MVTR R DL +N+PAL+KLD ML++ L
Sbjct: 144 WKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTL 203
Query: 217 EGFR-EAEFCYVDRGLIVGGGGDDTKTFPSCSSSSRPFAGPEEKWWLPFPMVPPNGLSEN 275
+ FR EF YV R G + +T +KWWLP VPP GLSE
Sbjct: 204 DNFRGHNEFWYVSRDSEEGQQARNDRT--------------NDKWWLPPVKVPPGGLSEP 249
Query: 276 MRERLQQARECTSQILKAAMAINSNVLAEMEIPNAYLESLPKSGKECLGEIMYNYITADQ 335
R L ++ +Q+ KAAMAIN+ VL+EMEIP +Y++SLPK+G+ LG+ +Y IT +
Sbjct: 250 SRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEW 309
Query: 336 FSPESLLAYLDLSSEYTTLEIANRIEAAVHIWRQKYQNKRIIRTKSGRSSWGGKVKGFVS 395
F PE LA LD+S+E+ L++ NRIEA+V IW KR + TK +SSWG V
Sbjct: 310 FDPEQFLAMLDMSTEHKVLDLKNRIEASVVIW------KRKLHTKDTKSSWGSAVS---- 359
Query: 396 DIERSKLLAHRADTILQNLKLRFPSLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFN 455
+E+ +L RA+TIL LK +FP LPQ++LD++KIQ+NKDVGQ++LESYSR++ESLA+
Sbjct: 360 -LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYT 418
Query: 456 IMARIDDLLYVDD-ATKQRAAAETAS 480
+M+RI+D+LY D A KQ AE S
Sbjct: 419 VMSRIEDVLYTDTLALKQTLLAEETS 444
>sp|Q98NS5|SYY_RHILO Tyrosine--tRNA ligase OS=Rhizobium loti (strain MAFF303099) GN=tyrS
PE=3 SV=1
Length = 417
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 18/119 (15%)
Query: 336 FSPESLLAYLDLSSEYTTLEIANRIEAAVHIWRQKYQNKRIIRTKSGRSSWGGKVKGFVS 395
F+ E++ AY+ + T+L I N I A + W Q+ ++ I G S G
Sbjct: 31 FAKETVTAYVGYDATATSLHIGNLISATMLYWLQETGHRPIALMGGGTSMIGDPS---FR 87
Query: 396 DIERSKLLAHRADTILQNLK------LRFPSLPQTA---------LDMNKIQYNKDVGQ 439
D +RS L T ++ +K LRF P A + +N +++ +DVG+
Sbjct: 88 DDQRSLLTPEAIATNIEGIKRIFGRILRFGDGPNDAIMVNNADWLMKLNYVEFLRDVGR 146
>sp|Q8T773|MDH1B_BRAFL Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B
PE=3 SV=1
Length = 522
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 65 SSEEVPIMLPVVGGRHVVVSV--NDTEKIPDSDLSEIELMKERFAKLLLGEDMSGGGKGV 122
+S+++ +++ G + +VS+ + T IP +++ + +KER AK LL + ++ GV
Sbjct: 246 ASKDIRVLVAGTGPLNSLVSILIDHTPSIPRQNIAAVAQVKERQAKSLLAKRLTVNSAGV 305
Query: 123 CTALAISN 130
C + N
Sbjct: 306 CDVIVWGN 313
>sp|Q3IEY7|PROA_PSEHT Gamma-glutamyl phosphate reductase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=proA PE=3 SV=1
Length = 415
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 291 LKAAMAINS---NVLAEMEIPNAYLESLPKSGKECLGEIMYNYITADQFSPESLLAYLDL 347
LK++ AI S +VLA+ +P A + +P + L E+M + D P ++
Sbjct: 151 LKSSQAIASVMHSVLAKHNLPEALISVIPDPDRGLLMELMQQRDSIDLIIPRGGEGLINF 210
Query: 348 SSEYTTLEIANRIEAAVHIWRQKYQNKRI-----IRTKSGRSSWGGKVKGFV 394
+E +T+ + + H++ K + + + K+ R+ ++G V
Sbjct: 211 VTENSTIPVIQHFKGVCHLYVDKDADLEVAINLLLNGKTQRTGVCNALEGLV 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,377,041
Number of Sequences: 539616
Number of extensions: 8435536
Number of successful extensions: 25208
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 24134
Number of HSP's gapped (non-prelim): 994
length of query: 551
length of database: 191,569,459
effective HSP length: 123
effective length of query: 428
effective length of database: 125,196,691
effective search space: 53584183748
effective search space used: 53584183748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)