Query 008837
Match_columns 551
No_of_seqs 96 out of 117
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 12:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ntx_A EMB|CAB41934.1, prone8; 100.0 6E-198 2E-202 1459.8 28.9 355 95-474 7-362 (365)
2 2dae_A KIAA0733 protein; mitog 66.7 3.1 0.00011 34.8 2.5 35 409-443 12-48 (75)
3 1wgl_A TOLL-interacting protei 53.3 9.8 0.00033 29.8 3.1 34 408-441 10-43 (59)
4 2dhy_A CUE domain-containing p 38.2 23 0.00078 28.6 3.1 33 409-441 20-52 (67)
5 3o0y_A Lipoprotein; structural 38.0 1.4E+02 0.0047 32.4 10.0 84 270-370 232-326 (609)
6 4h63_V Mediator of RNA polymer 37.6 60 0.002 29.2 6.0 68 398-472 11-78 (135)
7 2oz8_A MLL7089 protein; struct 28.6 37 0.0013 33.5 3.5 49 98-146 63-125 (389)
8 2o4w_A Lysozyme; protein foldi 25.7 74 0.0025 28.7 4.6 43 386-428 39-87 (171)
9 2qq6_A Mandelate racemase/muco 24.6 58 0.002 32.3 4.0 27 121-147 87-114 (410)
10 2fym_A Enolase; RNA degradosom 23.9 65 0.0022 32.6 4.3 29 118-146 103-132 (431)
11 3kfo_A Nucleoporin NUP133; nuc 22.6 1.4E+02 0.0047 29.9 6.3 151 278-465 75-261 (288)
No 1
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=100.00 E-value=6.3e-198 Score=1459.77 Aligned_cols=355 Identities=52% Similarity=0.893 Sum_probs=307.1
Q ss_pred ChhHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHhHhHHhhhccccccCcCcHHHhhhhhhhccccccccceeEEe
Q 008837 95 DLSEIELMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSASVFGELWKLEPLALRKKMMWQREMEWLLCVSDSIVEL 174 (551)
Q Consensus 95 ~~se~E~MKErFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmdwLLsVsD~IVEl 174 (551)
..+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+|||||||||||||||||||
T Consensus 7 ~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IVE~ 86 (365)
T 2ntx_A 7 QQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVEF 86 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCEEE
T ss_pred CchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccCCCcEEEeeecccccccccCchhhHHHhHHHHHHHhccCC-CeeEeeeCCcccCCCCCCCCCCCCCCCCCCCC
Q 008837 175 IPSLQEFPGGGTFEVMVTRPRSDLYVNLPALKKLDTMLVNILEGFRE-AEFCYVDRGLIVGGGGDDTKTFPSCSSSSRPF 253 (551)
Q Consensus 175 vPs~Q~~~dG~~~EvM~~rpRsDl~~NLPALrKLD~MLle~LDsF~d-tEFWYvd~g~~~~~~~~~~~~~~~s~s~r~~~ 253 (551)
|||+|++|||+++|||+||||+|||||||||||||+||||+||||+| ||||||++|+. + +.++..
T Consensus 87 vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~~--~------------~~~~~~ 152 (365)
T 2ntx_A 87 VPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSE--E------------GQQARN 152 (365)
T ss_dssp EEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC--------------------------
T ss_pred ccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCCC--c------------cccCCc
Confidence 99999999999999999999999999999999999999999999999 99999999941 1 124568
Q ss_pred CCCCCcccccCCcCCCCCCCHHHHHHHhHhhHHHHHHHHHHHHhhhhhhhcCCCchHHHhhcccCCccchhhHHHHhhhc
Q 008837 254 AGPEEKWWLPFPMVPPNGLSENMRERLQQARECTSQILKAAMAINSNVLAEMEIPNAYLESLPKSGKECLGEIMYNYITA 333 (551)
Q Consensus 254 ~R~eeKWWLP~P~VPp~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT~ 333 (551)
||||||||||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||+
T Consensus 153 ~r~eeKWWLP~p~VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~ 232 (365)
T 2ntx_A 153 DRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITE 232 (365)
T ss_dssp --------CCCEECCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHHTC
T ss_pred ccccccccCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhhhcCCCchhhHHHHhhhhHHHHHHHHHHhhccccccCCCccCCCccccccccchhHHHHHHHHHHHHHHHH
Q 008837 334 DQFSPESLLAYLDLSSEYTTLEIANRIEAAVHIWRQKYQNKRIIRTKSGRSSWGGKVKGFVSDIERSKLLAHRADTILQN 413 (551)
Q Consensus 334 d~Fspe~lL~~ldLssEH~aLe~aNRiEAai~vWrrK~~~k~~~~~~~~ksSWg~~Vkd~~~d~dK~e~laeRAEtlL~~ 413 (551)
|+|||||||+||||+|||+|||+|||||||||+||||++.++ +|+|||.+| +.|||++|++|||+||+|
T Consensus 233 d~Fspe~ll~~ldlssEH~~le~anRiEAsi~vWrrk~~~k~------~kssW~~~~-----~~dK~~~l~eRAEtlL~~ 301 (365)
T 2ntx_A 233 EWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKD------TKSSWGSAV-----SLEKRELFEERAETILVL 301 (365)
T ss_dssp SSCCHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCCcccc-----chhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 899997654 489999999999999999
Q ss_pred HHhhCCCCCcchhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccchh
Q 008837 414 LKLRFPSLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDLLYVDDATKQRA 474 (551)
Q Consensus 414 LKqRfPgLpQT~LD~sKIQyNkDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~l~~~~~ 474 (551)
|||||||||||+||++|||||||||||||||||||||||||||++|||||||+|++++++.
T Consensus 302 LKqRfPglpQTsLD~sKIQyNkDVG~aILESYSRvLesLAf~I~sRIdDvL~~D~~~~~~~ 362 (365)
T 2ntx_A 302 LKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLALKQT 362 (365)
T ss_dssp HHHHCTTCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCCchHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 2
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.71 E-value=3.1 Score=34.81 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCCCCcchhhhhhhh--hcchhhHHHHH
Q 008837 409 TILQNLKLRFPSLPQTALDMNKIQ--YNKDVGQSILE 443 (551)
Q Consensus 409 tlL~~LKqRfPgLpQT~LD~sKIQ--yNkDVG~aILE 443 (551)
.+++-||||||.+|+...--+=.| +|.|---.+|.
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~ 48 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLS 48 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHH
Confidence 378899999999999988765555 55555444443
No 3
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=53.29 E-value=9.8 Score=29.81 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhhcchhhHHH
Q 008837 408 DTILQNLKLRFPSLPQTALDMNKIQYNKDVGQSI 441 (551)
Q Consensus 408 EtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aI 441 (551)
|.-+..|+.-||++.+..+-..=..+|.||..||
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI 43 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4567789999999999888888888888887776
No 4
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.19 E-value=23 Score=28.56 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCCCcchhhhhhhhhcchhhHHH
Q 008837 409 TILQNLKLRFPSLPQTALDMNKIQYNKDVGQSI 441 (551)
Q Consensus 409 tlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aI 441 (551)
..+..||+-||.+....+...=..+|.||..+|
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aI 52 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATI 52 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 346679999999998888777777777887776
No 5
>3o0y_A Lipoprotein; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, lipid protein; 1.70A {Colwellia psychrerythraea}
Probab=38.00 E-value=1.4e+02 Score=32.36 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHhHhhHHHHHHHHHHHHhhhhhhhcCCCchHHHhhcccCCc-----cch--hhHHHHhh----hcCCCCh
Q 008837 270 NGLSENMRERLQQARECTSQILKAAMAINSNVLAEMEIPNAYLESLPKSGK-----ECL--GEIMYNYI----TADQFSP 338 (551)
Q Consensus 270 ~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGr-----asL--GD~iYr~i----T~d~Fsp 338 (551)
+||+++.++.|..+- ..||+..|+--+.==-.|++.|-.+|+ ..| |+..|+++ |.-.-+|
T Consensus 232 ~~l~~~~~~~l~~~a---------~~ai~~~v~PAy~~l~~~l~~l~p~a~~~~G~~~lP~G~~~Y~~~l~~~ttt~~t~ 302 (609)
T 3o0y_A 232 DSLTTEQKQSLITQV---------IAKVSQVVYPAYQSVEKASEQLLSEARSESGIWAQPKGSVYYQDAIKQLGDSELSP 302 (609)
T ss_dssp TTSCHHHHHHHHHHH---------HHHHHHTHHHHHHHHHHHHHHHTTTSBSCCSGGGSTTHHHHHHHHHHHHHCCCSCH
T ss_pred ccCCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchhcCCChHHHHHHHHHHhhCCCCCH
Confidence 469999888875542 223333333222222234444433333 334 99999987 5566789
Q ss_pred HHHhhhcCCCchhhHHHHhhhhHHHHHHHHHH
Q 008837 339 ESLLAYLDLSSEYTTLEIANRIEAAVHIWRQK 370 (551)
Q Consensus 339 e~lL~~ldLssEH~aLe~aNRiEAai~vWrrK 370 (551)
|++.. -.++-..||.+.|..=.++
T Consensus 303 dEi~~--------~gl~ev~ri~~em~~i~~~ 326 (609)
T 3o0y_A 303 TQIHQ--------IGLDEVARISGVMNEILLA 326 (609)
T ss_dssp HHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 98753 3466777888877654333
No 6
>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=37.61 E-value=60 Score=29.24 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 008837 398 ERSKLLAHRADTILQNLKLRFPSLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDLLYVDDATKQ 472 (551)
Q Consensus 398 dK~e~laeRAEtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~l~~~ 472 (551)
.|.+.|-.|..+....|-++|- .-+..++|| |+|-+.+..|+|. ++.-|-+|+.-++|+|-.=+-.|.
T Consensus 11 ~k~~~l~~rid~~v~~ll~~f~----~iv~lA~v~-~~~~~~~A~e~~~--~~~~~~~~vra~e~LL~L~r~lKe 78 (135)
T 4h63_V 11 QRTNTLNSSIDNATLTILSRFQ----DILDIAINE-GKDKYTVAPEVYQ--IECHTVSMVRAVEQLLDVSRQIKS 78 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCT-TCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcC-CCcHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888884 456778888 8899999999997 788888999999999876555543
No 7
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=28.65 E-value=37 Score=33.51 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhccC-------CCCCCcc------hhHHHHHHHHHhHhHHhhhcc-cccc
Q 008837 98 EIELMKERFAKLLLGED-------MSGGGKG------VCTALAISNAITNLSASVFGE-LWKL 146 (551)
Q Consensus 98 e~E~MKErFaKLLLGED-------MSGggKG------V~tALAiSNAITNL~AtVFGe-lwrL 146 (551)
-...+++.++.+|.|+| +-+++.| .+...||..|+-.|.+-..|. +|+|
T Consensus 63 ~~~~i~~~l~p~l~G~d~~~~~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~l 125 (389)
T 2oz8_A 63 IESVFEHEVWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVL 125 (389)
T ss_dssp HHHHHHHHTHHHHTTSCHHHHTTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566777999999998 4334444 467789999999999998887 6665
No 8
>2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=25.71 E-value=74 Score=28.72 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=30.1
Q ss_pred CccccccccchhHHHHHHHHHHHHHHHHHHhhCC------CCCcchhhh
Q 008837 386 WGGKVKGFVSDIERSKLLAHRADTILQNLKLRFP------SLPQTALDM 428 (551)
Q Consensus 386 Wg~~Vkd~~~d~dK~e~laeRAEtlL~~LKqRfP------gLpQT~LD~ 428 (551)
+|..|++-+++.+=.++|+........+++..++ .|+|...|+
T Consensus 39 ~G~~v~~~iT~~ea~~ll~~Dl~~~~~~v~~~~~~~~~~v~l~q~q~dA 87 (171)
T 2o4w_A 39 IGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAA 87 (171)
T ss_dssp HTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHH
T ss_pred cccccCCCcCHHHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHH
Confidence 4455566677777788888877777777777665 567666553
No 9
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=24.58 E-value=58 Score=32.28 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHhHhHHhhhcc-ccccC
Q 008837 121 GVCTALAISNAITNLSASVFGE-LWKLE 147 (551)
Q Consensus 121 GV~tALAiSNAITNL~AtVFGe-lwrLE 147 (551)
+.++..||+.|+-.|.|-..|. +|+|=
T Consensus 87 ~~~A~~aid~AlwDl~gk~~g~Pl~~lL 114 (410)
T 2qq6_A 87 VITALSGIETALWDLAGKLQGVPVYRLL 114 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGGT
T ss_pred HHHHHHHHHHHHHHHhHhHcCCcHHHHc
Confidence 4566789999999999999997 77763
No 10
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=23.86 E-value=65 Score=32.57 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=24.5
Q ss_pred CCcchhHHHHHHHHHhHhHHhhhcc-cccc
Q 008837 118 GGKGVCTALAISNAITNLSASVFGE-LWKL 146 (551)
Q Consensus 118 ggKGV~tALAiSNAITNL~AtVFGe-lwrL 146 (551)
++.|..+..||+.|+-.+.|-..|. +|+|
T Consensus 103 ~~~g~~A~~avd~AlwD~~ak~~g~Pl~~l 132 (431)
T 2fym_A 103 SKFGANAILAVSLANAKAAAAAKGMPLYEH 132 (431)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566788899999999999999997 6765
No 11
>3kfo_A Nucleoporin NUP133; nuclear pore complex, yeast, proteolysis, structural genomics, PSI2, protein structure initiative; HET: MSE; 1.90A {Saccharomyces cerevisiae}
Probab=22.64 E-value=1.4e+02 Score=29.85 Aligned_cols=151 Identities=14% Similarity=0.234 Sum_probs=92.4
Q ss_pred HHHhHhhHHHHHHHHHHHHhhhhhhhcCCCchHHHhhcccCCccchhhHHHHhhhcCCCChHHHhhhcCCCch----hhH
Q 008837 278 ERLQQARECTSQILKAAMAINSNVLAEMEIPNAYLESLPKSGKECLGEIMYNYITADQFSPESLLAYLDLSSE----YTT 353 (551)
Q Consensus 278 K~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~~ldLssE----H~a 353 (551)
--++.|.+...+|.++.+ -++..|.+. .=+.-+.+.++|.+.-...+|++|++-|-|-.. +.|
T Consensus 75 dlI~~Q~~L~~~i~~~~~----------~~~k~~~~~---al~~lf~~~~~kL~~~~~L~~~eLIDLLTLid~~~~F~~A 141 (288)
T 3kfo_A 75 DTIDAEKNISNKLKKGEV----------QICKRFKNG---SIREVFNILVEELKSTTVVNLSDLVELYSMLDDEESLFIP 141 (288)
T ss_dssp HHHHHHHHHHHHHHHTCS----------CBCGGGSSH---HHHHHHHHHHHHHHSSSCCCHHHHHHHHTTBCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh----------HHHHHhhhH---HHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCChhHHHHH
Confidence 356889999999987422 244444421 003356677788889999999999998766543 357
Q ss_pred HHHhhhh----------HHHHHHHHHHhhccccccCCCccCCCccccccccchhHHHHHHHHHHHHHHHHHHhhC-----
Q 008837 354 LEIANRI----------EAAVHIWRQKYQNKRIIRTKSGRSSWGGKVKGFVSDIERSKLLAHRADTILQNLKLRF----- 418 (551)
Q Consensus 354 Le~aNRi----------EAai~vWrrK~~~k~~~~~~~~ksSWg~~Vkd~~~d~dK~e~laeRAEtlL~~LKqRf----- 418 (551)
|.++... ++---||||=+-.-+ | . + ..-.| ..+|..|++.++
T Consensus 142 LkvL~~~~~~~~~e~~~~l~~lIWRRcilrDd----------~-~-~--------~~TaL---y~tL~~~~~~~l~~~~~ 198 (288)
T 3kfo_A 142 LRLLSVDGNLLNFEVKKFLNALVWRRIVLLNA----------S-N-E--------GDKLL---QHIVKRVFDEELPKNND 198 (288)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHT----------T-S-T--------TCHHH---HHHHHHHHHTTHHHHSC
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHHHhhcC----------C-c-c--------hhhHH---HHHHHHHHHhhhcccCC
Confidence 8888777 355789999886543 4 1 1 11111 356777777752
Q ss_pred CCCCcchhhhhhh------------hhcchh---hHHHHHHHHHHHHHHHHH--HHHhhhhhhh
Q 008837 419 PSLPQTALDMNKI------------QYNKDV---GQSILESYSRVMESLAFN--IMARIDDLLY 465 (551)
Q Consensus 419 PgLpQT~LD~sKI------------QyNkDV---G~aILESYSRVLEsLAfn--I~sRIdDVL~ 465 (551)
+-||-=++=+.|. +|+.|+ -..|=+.|+. ||+|.++ +-.||--++-
T Consensus 199 ~~lp~~~~l~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~s~ig 261 (288)
T 3kfo_A 199 FPLPSVDLLCDKSLLTPEYISETYGRFPIDQNAIREEIYEEISQ-VETLNSDNSLEIKLHSTIG 261 (288)
T ss_dssp EECCCHHHHTCGGGCCHHHHHHHHTTSSSCHHHHHHHHHHHHHH-HHHHTGGGHHHHHHHHHHH
T ss_pred CCCCchHHHhccccccHHHHHHHhcCCchhHHHHHHHHHHHHHH-HHhcCcchhHHHHHHHHHH
Confidence 2355444433333 233333 3355555554 5778887 7777766665
Done!