Query 008837
Match_columns 551
No_of_seqs 96 out of 117
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 12:52:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008837.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008837hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v97a5 d.133.1.1 (A:695-1332) 35.3 10 0.00075 37.7 3.3 27 127-153 579-610 (638)
2 d1t3qb2 d.133.1.1 (B:166-786) 33.5 13 0.00093 36.5 3.6 36 123-160 583-619 (621)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 30.3 17 0.0013 27.1 3.1 35 407-441 9-43 (59)
4 d1mn3a_ a.5.2.4 (A:) Vacuolar 25.9 38 0.0028 24.7 4.2 34 408-441 13-46 (54)
5 d1ly1a_ c.37.1.1 (A:) Polynucl 24.8 36 0.0026 25.5 4.1 37 313-349 8-45 (152)
6 d1ffvb2 d.133.1.1 (B:147-803) 23.0 33 0.0024 33.8 4.5 38 122-160 615-652 (657)
7 d2ia7a1 d.373.1.1 (A:23-133) U 21.3 27 0.002 27.2 2.8 38 125-162 8-57 (111)
8 d1x6va3 c.37.1.4 (A:34-228) Ad 19.3 28 0.0021 27.0 2.5 59 311-369 23-86 (195)
9 d1n62b2 d.133.1.1 (B:147-809) 19.1 41 0.003 33.1 4.2 39 123-162 622-660 (663)
10 d1rx0a2 e.6.1.1 (A:10-240) Iso 17.0 68 0.0049 26.6 4.6 45 268-316 6-51 (231)
No 1
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=35.25 E-value=10 Score=37.74 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=21.8
Q ss_pred HHHHHHhHhHHhhhcc----cccc-CcCcHHH
Q 008837 127 AISNAITNLSASVFGE----LWKL-EPLALRK 153 (551)
Q Consensus 127 AiSNAITNL~AtVFGe----lwrL-EPL~~ek 153 (551)
||.|||-|....-|.. .+.+ =|+.|||
T Consensus 579 AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPer 610 (638)
T d1v97a5 579 AIKDAIRAARAQHTNNNTKELFRLDSPATPEK 610 (638)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHH
T ss_pred HHHHHHHHhhhhhccccccccccCCCCCCHHH
Confidence 9999999999998874 4444 3999997
No 2
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=33.53 E-value=13 Score=36.49 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhHhHHhhhc-cccccCcCcHHHhhhhhhh
Q 008837 123 CTALAISNAITNLSASVFG-ELWKLEPLALRKKMMWQRE 160 (551)
Q Consensus 123 ~tALAiSNAITNL~AtVFG-elwrLEPL~~ekK~mWrRE 160 (551)
++|=||.|||.|-... +| .+.+| |+.|||=-+.-+|
T Consensus 583 ~~~~AI~nAi~~A~g~-~~~r~~~l-P~tpe~v~~al~~ 619 (621)
T d1t3qb2 583 SAPAAVVAAVNDALAH-LEVVIETV-PITPERIFRSIQE 619 (621)
T ss_dssp HHHHHHHHHHHHHHGG-GTCCCCEE-SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCC-cCCcccCC-CCCHHHHHHHHhh
Confidence 5667999999998653 22 34444 9999986555443
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.34 E-value=17 Score=27.06 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhCCCCCcchhhhhhhhhcchhhHHH
Q 008837 407 ADTILQNLKLRFPSLPQTALDMNKIQYNKDVGQSI 441 (551)
Q Consensus 407 AEtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aI 441 (551)
.|..+..||.-||++-...+..-=+..|-+|+.+|
T Consensus 9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~ai 43 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 35568999999999987666655555555555543
No 4
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.93 E-value=38 Score=24.74 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhhcchhhHHH
Q 008837 408 DTILQNLKLRFPSLPQTALDMNKIQYNKDVGQSI 441 (551)
Q Consensus 408 EtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aI 441 (551)
+..+..||.-||++....+..-=...|-+|+.+|
T Consensus 13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~ai 46 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCV 46 (54)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4578999999999988877777777777777665
No 5
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=24.76 E-value=36 Score=25.54 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=27.9
Q ss_pred hhcccCCccchhhHHHHhh-hcCCCChHHHhhhcCCCc
Q 008837 313 ESLPKSGKECLGEIMYNYI-TADQFSPESLLAYLDLSS 349 (551)
Q Consensus 313 esLPKnGrasLGD~iYr~i-T~d~Fspe~lL~~ldLss 349 (551)
--+|-+||++|...|.+.. ..-.++.+.+...+....
T Consensus 8 ~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~ 45 (152)
T d1ly1a_ 8 IGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHE 45 (152)
T ss_dssp ECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSC
T ss_pred ECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhccc
Confidence 3578899999999887654 577888988877654433
No 6
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=22.95 E-value=33 Score=33.83 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhHhHHhhhccccccCcCcHHHhhhhhhh
Q 008837 122 VCTALAISNAITNLSASVFGELWKLEPLALRKKMMWQRE 160 (551)
Q Consensus 122 V~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrRE 160 (551)
+++|=||.|||-|-... .|--.+==||.|||=-..-+|
T Consensus 615 ~~~~~Ai~nAI~~A~~~-tG~r~~~lP~Tpe~v~~al~~ 652 (657)
T d1ffvb2 615 VGSIPTFTAAVVDAFAH-VGVTHLDMPHTSYRVWKSLKE 652 (657)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCCCCSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh-hCCccCCCCCCHHHHHHHHHh
Confidence 45777899999987433 365444449999986665554
No 7
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=21.34 E-value=27 Score=27.21 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=33.8
Q ss_pred HHHHHHHHhHhHHhhhcc----------cccc--CcCcHHHhhhhhhhcc
Q 008837 125 ALAISNAITNLSASVFGE----------LWKL--EPLALRKKMMWQREME 162 (551)
Q Consensus 125 ALAiSNAITNL~AtVFGe----------lwrL--EPL~~ekK~mWrREmd 162 (551)
.=+|-++|-||--|-.|| +|.| ||+.+..+...++++.
T Consensus 8 ee~I~q~i~nll~T~~GEr~~~p~fG~~l~~llFe~~~~~~~~~i~~~I~ 57 (111)
T d2ia7a1 8 EEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEVK 57 (111)
T ss_dssp HHHHHHHHHHHHTCCTTSSTTCTTCSCGGGGCCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccCCccccEechhhhhhcchhHHHHHHHHHH
Confidence 347889999999999999 8888 9999999999999984
No 8
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.35 E-value=28 Score=27.00 Aligned_cols=59 Identities=10% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHhhcccCCccchhhHHHHhh-----hcCCCChHHHhhhcCCCchhhHHHHhhhhHHHHHHHHH
Q 008837 311 YLESLPKSGKECLGEIMYNYI-----TADQFSPESLLAYLDLSSEYTTLEIANRIEAAVHIWRQ 369 (551)
Q Consensus 311 y~esLPKnGrasLGD~iYr~i-----T~d~Fspe~lL~~ldLssEH~aLe~aNRiEAai~vWrr 369 (551)
||--+|-+||++||..|-+.+ ..+.+..|++.......-+...-......+....+++.
T Consensus 23 ~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T d1x6va3 23 WLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKL 86 (195)
T ss_dssp EEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHH
Confidence 455689999999999998876 45566677666544333333333333444444444443
No 9
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=19.09 E-value=41 Score=33.06 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhHhHHhhhccccccCcCcHHHhhhhhhhcc
Q 008837 123 CTALAISNAITNLSASVFGELWKLEPLALRKKMMWQREME 162 (551)
Q Consensus 123 ~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmd 162 (551)
++|=||.|||-|-.+ .+|--.+=-||.|||=-+.-+|+.
T Consensus 622 ~~~~Ai~nAI~~A~~-~~G~r~~~lP~tpe~v~~~~~~~~ 660 (663)
T d1n62b2 622 GGVPCFSNAVNDAYA-FLNAGHIQMPHDAWRLWKVGEQLG 660 (663)
T ss_dssp HHHHHHHHHHHHHHH-TTTCCCCCSCCCHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHH-hcCCccccCCCCHHHHHHHHHHcC
Confidence 478899999998764 578766777999999866667775
No 10
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.03 E-value=68 Score=26.55 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHhHhhHHHHHHH-HHHHHhhhhhhhcCCCchHHHhhcc
Q 008837 268 PPNGLSENMRERLQQARECTSQIL-KAAMAINSNVLAEMEIPNAYLESLP 316 (551)
Q Consensus 268 Pp~GLSe~~RK~L~~qrd~~nQIl-KAAmAINs~vL~EMeIPe~y~esLP 316 (551)
|.-||+|+.|...+.-|+++...+ ..|..+-.+ =.+|...++.|=
T Consensus 6 ~~~~Lt~e~~~l~~~~r~F~~~~i~p~a~~~d~~----~~~p~~~~~~l~ 51 (231)
T d1rx0a2 6 PSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQK----ELFPVDVMRKAA 51 (231)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH----TCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhc----CCCCHHHHHHHH
Confidence 778999999999999999998844 444444432 246666665553
Done!