BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008838
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + LT+ + + F T N MKW +TE QG N+ AD ++ + ++NG
Sbjct: 18 FGVATDQNRLTTGKNAAIIQADFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEE-LREAAAKRINSVTSRYAGKLIAWDVVNE---- 320
+RGH + W Q PSWV ++ + L I ++ +RY GK+ AWDVVNE
Sbjct: 78 KLIRGHTLVW--HSQLPSWVVSITDKNTLTNVMKNHITTIMTRYIGKIRAWDVVNEAFNE 135
Query: 321 --NLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
+L F + +GE+ +R A DPN +++N+YN + K S V KK
Sbjct: 136 DGSLRQTVFNNVIGEDYIPIAFRTARAADPNAKLYINDYNLDSASKPKTSAIVKRVKKWR 195
Query: 379 EILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLP-IWLTEVDVDIGPNQ 436
AG+ + GIG Q H S+ Q A + + L L S G P + +TE+D+ G
Sbjct: 196 A-------AGVPIDGIGSQTHLSAGQG--ASIDAALPNLASAGTPEVAITELDI-AGATS 245
Query: 437 SQYLEEI 443
+ Y++ +
Sbjct: 246 TDYVDVV 252
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + LT+ + + F T N MKW +TE QG N+ AD ++ + ++NG
Sbjct: 18 FGVATDQNRLTTGKNAAIIQANFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEE-LREAAAKRINSVTSRYAGKLIAWDVVNE---- 320
+RGH + W Q PSWV ++ + L I ++ +RY GK+ AWDVVNE
Sbjct: 78 KLIRGHTLVW--HSQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 135
Query: 321 --NLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
+L F + +GE+ ++ A DPN +++N+YN + K VN KK
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNLDSASYPKTQAIVNRVKKWR 195
Query: 379 EILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLP-IWLTEVDVDIGPNQ 436
AG+ + GIG Q H S+ Q A + L +L S G P + +TE+DV G +
Sbjct: 196 A-------AGVPIDGIGSQTHLSAGQG--ASVLQALPLLASAGTPEVAITELDV-AGASS 245
Query: 437 SQYLEEI 443
+ Y+ +
Sbjct: 246 TDYVNVV 252
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + LT+ + + F T N MKW +TE QG N+ AD ++ + ++NG
Sbjct: 18 FGVATDQNRLTTGKNAAIIQANFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEE-LREAAAKRINSVTSRYAGKLIAWDVVNE---- 320
+RGH + W Q PSWV ++ + L I ++ +RY GK+ AWDVVNE
Sbjct: 78 KLIRGHTLVW--HSQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 135
Query: 321 --NLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
+L F + +GE+ ++ A DPN +++N+YN + K VN KK
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNLDSASYPKTQAIVNRVKKWR 195
Query: 379 EILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLP-IWLTEVDVDIGPNQ 436
AG+ + GIG Q H S+ Q A + L +L S G P + +TE+DV G +
Sbjct: 196 A-------AGVPIDGIGSQTHLSAGQG--AGVLQALPLLASAGTPEVAITELDV-AGASP 245
Query: 437 SQYLEEI 443
+ Y+ +
Sbjct: 246 TDYVNVV 252
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + LT+ + + F T N MKW +TE QG N+ AD ++ + ++NG
Sbjct: 18 FGVATDQNRLTTGKNAAIIQADFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEE-LREAAAKRINSVTSRYAGKLIAWDVVNE---- 320
+RGH + W Q PSWV ++ + L I ++ +RY GK+ AWDVVNE
Sbjct: 78 KLIRGHTLVW--HSQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 135
Query: 321 --NLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
+L F + +GE+ ++ A DPN +++N+YN + K VN K+
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNLDSASYPKTQAIVNRVKQWR 195
Query: 379 EILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLP-IWLTEVDVDIGPNQ 436
AG+ + GIG Q H S+ Q A + L +L S G P + +TE+DV G +
Sbjct: 196 A-------AGVPIDGIGSQTHLSAGQG--AGVLQALPLLASAGTPEVAITELDV-AGASP 245
Query: 437 SQYLEEI 443
+ Y+ +
Sbjct: 246 TDYVNVV 252
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + LT+ + + F T N MKW +TE QG N+ AD ++ + ++NG
Sbjct: 18 FGVATDQNRLTTGKNAAIIQADFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEE-LREAAAKRINSVTSRYAGKLIAWDVVNE---- 320
+RGH + W Q PSWV ++ + L I ++ +RY GK+ AWDVVNE
Sbjct: 78 KLIRGHTLVW--HSQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 135
Query: 321 --NLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
+L F + +GE+ ++ A DPN +++N+YN + K VN K+
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNLDSASYPKTQAIVNRVKQWR 195
Query: 379 EILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLP-IWLTEVDVDIGPNQ 436
AG+ + GIG Q H S+ Q A + L +L S G P + +TE+DV G +
Sbjct: 196 A-------AGVPIDGIGSQTHLSAGQG--AGVLQALPLLASAGTPEVAITELDV-AGASP 245
Query: 437 SQYLEEI 443
+ Y+ +
Sbjct: 246 TDYVNVV 252
>pdb|1NQ6|A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A
From Streptomyces Halstedii Jm8
Length = 302
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 21/293 (7%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + L Y + ++F T N+MKW + E + +++ AD ++ + G
Sbjct: 15 FGAAVAANHLGEAAYASTLDAQFGSVTPENEMKWDAVESSRNSFSFSAADRIVSHAQSKG 74
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLH-- 323
+ VRGH + W + Q P WV L+ +LR A I V + Y GK+ +WDVVNE
Sbjct: 75 MKVRGHTLVWHS--QLPGWVSPLAATDLRSAMNNHITQVMTHYKGKIHSWDVVNEAFQDG 132
Query: 324 ------FRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKI 377
F+D LG E +R A +D + + N+YNT + +SNAV K
Sbjct: 133 GSGARRSSPFQDKLGNGFIEEAFRTARTVDADAKLCYNDYNTD--GQNAKSNAVYEMVKD 190
Query: 378 DEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVD-IGPNQ 436
+ P + +G Q HF+S+ P + ++ L G+ + +TE+D++ G Q
Sbjct: 191 FKQRGVPIDC-----VGFQSHFNSNSPVPSDFQANLQRFADLGVDVQITELDIEGSGSAQ 245
Query: 437 SQYLEEILREAYAHPAVKGIISFSGPAIAGFKV--MPLA-DKDFKNTPAGDVV 486
+ +++ A GI + ++ PL D D+ PA D V
Sbjct: 246 AANYTKVVNACLAVTRCTGITVWGVTDKYSWRSGGTPLLFDGDYNKKPAYDAV 298
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 25/241 (10%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + + L+ + Y + F T N+MK +TE +G+ N++ AD + + +NG
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR 325
VRGH + W QQP W++ LS LR+A IN V + Y GK++ WDVVNE
Sbjct: 76 KQVRGHTLAW--HSQQPGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNE----A 129
Query: 326 FFEDNLGENASAEF-----------YRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYK 374
F + + G + +R A DP+ + N+YN K N
Sbjct: 130 FADGSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKTQAMYNMV 189
Query: 375 KKIDEILSYPGNAGMSLG-IGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIG 433
+ + G+ + +G Q HF+S P + R+ L + G+ + +TE+D+
Sbjct: 190 RDFKQ-------RGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGA 242
Query: 434 P 434
P
Sbjct: 243 P 243
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + + L+ + Y + F T N+MK +TE +G+ N++ AD + + +NG
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR 325
VRGH + W + QQP W++ LS LR+A IN V + Y GK++ WDVVNE
Sbjct: 76 KQVRGHTLAWHS--QQPGWMQSLSGRPLRQAMIDHINGVMAHYKGKIVQWDVVNE----A 129
Query: 326 FFEDNLGENASAEF-----------YRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYK 374
F + + G + +R A DP+ + N+YN K N
Sbjct: 130 FADGSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKTQAMYNMV 189
Query: 375 KKIDEILSYPGNAGMSLG-IGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIG 433
+ + G+ + +G Q HF+S P + R+ L + G+ + +TE+D+
Sbjct: 190 RDFKQ-------RGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGA 242
Query: 434 P 434
P
Sbjct: 243 P 243
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 25/241 (10%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + + L+ + Y + F T N+MK +TE +G+ N++ AD + + +NG
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR 325
VRGH + W QQP W++ LS LR+A IN V + Y GK++ WDVVNE
Sbjct: 76 KQVRGHTLAW--HSQQPGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNE----A 129
Query: 326 FFEDNLGENASAEF-----------YRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYK 374
F + + G + +R A DP+ + N+YN K N
Sbjct: 130 FADGSSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNVENWTWAKTQAMYNMV 189
Query: 375 KKIDEILSYPGNAGMSLG-IGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIG 433
+ + G+ + +G Q HF+S P + R+ L + G+ + +TE+D+
Sbjct: 190 RDFKQ-------RGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGA 242
Query: 434 P 434
P
Sbjct: 243 P 243
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 28/250 (11%)
Query: 204 FPFGCGMNNYIL-TSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCE 262
F G ++ +L T E+ A + T NQMK+ + E + AD ++ F
Sbjct: 15 FKIGAAVHTRMLQTEGEF---IAKHYNSVTAENQMKFEEVHPREHEYTFEAADEIVDFAV 71
Query: 263 KNGISVRGHNIFWDNSKQQPSWV------KKLSPEELREAAAKRINSVTSRYAGKLIAWD 316
GI VRGH + W N Q P+W+ S E + + I++V RY ++ AWD
Sbjct: 72 ARGIGVRGHTLVWHN--QTPAWMFEDASGGTASREMMLSRLKQHIDTVVGRYKDQIYAWD 129
Query: 317 VVNENLHFR---FFEDN-----LGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKES 368
VVNE + + D LGE+ + + +AH+ DPN ++F N+YN E+
Sbjct: 130 VVNEAIEDKTDLIMRDTKWLRLLGEDYLVQAFNMAHEADPNALLFYNDYN--------ET 181
Query: 369 NAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEV 428
+ V +K + + S GIG+QGH++ P + +R ++ S + + +TE+
Sbjct: 182 DPVKREKIYNLVRSLLDQGAPVHGIGMQGHWNIHGPSMDEIRQAIERYASLDVQLHVTEL 241
Query: 429 DVDIGPNQSQ 438
D+ + ++ Q
Sbjct: 242 DLSVFRHEDQ 251
>pdb|1TA3|B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
Length = 303
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 21/245 (8%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + +L +++ + AS+F T N MKW + E QG ++ AD ++ + ++
Sbjct: 17 FGTCSDQALLQNSQNEAIVASQFGVITPENSMKWDALEPSQGNFGWSGADYLVDYATQHN 76
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLS-PEELREAAAKRINSVTSRYAGKLIAWDVVNENLH- 323
VRGH + W Q PSWV + LR IN V RY GK++ WDVVNE +
Sbjct: 77 KKVRGHTLVW--HSQLPSWVSSIGDANTLRSVMTNHINEVVGRYKGKIMHWDVVNEIFNE 134
Query: 324 ---FR--FFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKK-I 377
FR F + LGE+ + A DP+ +++N+YN + K +Y KK +
Sbjct: 135 DGTFRNSVFYNLLGEDFVRIAFETARAADPDAKLYINDYNLDSASYAKTQAMASYVKKWL 194
Query: 378 DEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLP-IWLTEVDVDIGPN 435
E G+ + GIG Q H+SS L L +TG+ + +TE+D+ G
Sbjct: 195 AE--------GVPIDGIGSQAHYSSSHWSSTEAAGALSSLANTGVSEVAITELDI-AGAA 245
Query: 436 QSQYL 440
S YL
Sbjct: 246 SSDYL 250
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + + L + Y + F T N+MK +TE +G+ N++ D + + +NG
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR 325
VRGH + W QQP W++ LS LR+A IN V Y GK+ WDVVNE
Sbjct: 76 KQVRGHTLAW--HSQQPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNE----A 129
Query: 326 FFEDNLGENASAEF-----------YRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYK 374
F +D G + +R A DP + N+YN K N
Sbjct: 130 FSDDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKTQGVYNMV 189
Query: 375 KKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIGP 434
+ + P + +G Q HF+S P + R+ L + G+ + +TE+D+ G
Sbjct: 190 RDFKQ-RGVPIDC-----VGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQ-GA 242
Query: 435 NQSQY 439
+ S Y
Sbjct: 243 SSSTY 247
>pdb|2CNC|A Chain A, Family 10 Xylanase
Length = 386
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 24/268 (8%)
Query: 181 QLTSANKTALEGAVVSVTQIKSDFPFGCGMNNYILTSTE--YQNWFASRFKYTTFTNQMK 238
+L +A K A + + S K +F G +N I + + A F T N MK
Sbjct: 23 KLAAATKAAEQTGLKSA--YKDNFLIGAALNATIASGADERLNTLIAKEFNSITPENCMK 80
Query: 239 WYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK----LSPEELR 294
W QG+ N+ ADA + F K+ + + GH + W + + +S L+
Sbjct: 81 WGVLRDAQGQWNWKDADAFVAFGTKHNLHMVGHTLVWHSQIHDEVFKNADGSYISKAALQ 140
Query: 295 EAAAKRINSVTSRYAGKLIAWDVVNE----NLHFR--FFEDNLGENASAEFYRIAHQLDP 348
+ + I ++ RY GKL AWDVVNE +L R + +G++ + +A+++DP
Sbjct: 141 KKMEEHITTLAGRYKGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEVDP 200
Query: 349 NTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIA 407
+ N+YN IE +E+ E++ GM + G+G+QGH D P IA
Sbjct: 201 KAHLMYNDYN-IERTGKREATV--------EMIERLQKRGMPIHGLGIQGHLGIDTPPIA 251
Query: 408 YMRSVLDILGSTGLPIWLTEVDVDIGPN 435
+ + GL + T +DVD+ P+
Sbjct: 252 EIEKSIIAFAKLGLRVHFTSLDVDVLPS 279
>pdb|1UQY|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Xylopentaose
pdb|1UQZ|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With 4-O-Methyl Glucuronic Acid
pdb|1UR1|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha-1,3 Linked To
Xylobiose
pdb|1UR2|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha 1,3 Linked To
Xylotriose
Length = 378
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 24/268 (8%)
Query: 181 QLTSANKTALEGAVVSVTQIKSDFPFGCGMNNYILTSTE--YQNWFASRFKYTTFTNQMK 238
+L +A K A + + S K +F G +N I + + A F T N MK
Sbjct: 14 KLAAATKAAEQTGLKSA--YKDNFLIGAALNATIASGADERLNTLIAKEFNSITPENCMK 71
Query: 239 WYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK----LSPEELR 294
W QG+ N+ ADA + F K+ + + GH + W + + +S L+
Sbjct: 72 WGVLRDAQGQWNWKDADAFVAFGTKHNLHMVGHTLVWHSQIHDEVFKNADGSYISKAALQ 131
Query: 295 EAAAKRINSVTSRYAGKLIAWDVVNE----NLHFR--FFEDNLGENASAEFYRIAHQLDP 348
+ + I ++ RY GKL AWDVVNE +L R + +G++ + +A+++DP
Sbjct: 132 KKMEEHITTLAGRYKGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEVDP 191
Query: 349 NTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIA 407
+ N+YN IE +E+ E++ GM + G+G+QGH D P IA
Sbjct: 192 KAHLMYNDYN-IERTGKREATV--------EMIERLQKRGMPIHGLGIQGHLGIDTPPIA 242
Query: 408 YMRSVLDILGSTGLPIWLTEVDVDIGPN 435
+ + GL + T +DVD+ P+
Sbjct: 243 EIEKSIIAFAKLGLRVHFTSLDVDVLPS 270
>pdb|2G3I|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G3J|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|B Chain B, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
Length = 313
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 24/245 (9%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + + L + Y + F T N+MK +TE +G+ N++ D + + +NG
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR 325
VRGH + W ++ QP W++ LS LR+A IN V Y GK+ WDVVNE
Sbjct: 76 KQVRGHTLAWHSA--QPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNE----A 129
Query: 326 FFEDNLGENASAEF-----------YRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYK 374
F +D G + +R A DP + N+YN K N
Sbjct: 130 FSDDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKTQGVYNMV 189
Query: 375 KKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIGP 434
+ + P + +G Q HF+S P + R+ L + G+ + +TE+D+ G
Sbjct: 190 RDFKQ-RGVPIDC-----VGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQ-GA 242
Query: 435 NQSQY 439
+ S Y
Sbjct: 243 SSSTY 247
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 106/245 (43%), Gaps = 24/245 (9%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + + L + Y + F T N+MK +TE +G+ N++ D + + +NG
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR 325
VRGH + W QQP W++ LS LR+A IN V Y GK+ WDVV+
Sbjct: 76 KQVRGHTLAW--HSQQPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVSH----A 129
Query: 326 FFEDNLGENASAEF-----------YRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYK 374
F +D G + +R A DP + N+YN K N
Sbjct: 130 FSDDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKTQGVYNMV 189
Query: 375 KKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIGP 434
+ + P + +G Q HF+S P + R+ L + G+ + +TE+D+ G
Sbjct: 190 RDFKQ-RGVPIDC-----VGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQ-GA 242
Query: 435 NQSQY 439
+ S Y
Sbjct: 243 SSSTY 247
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 30/261 (11%)
Query: 202 SDFPFGCGMNNY------ILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIAD 255
SDFP G ++N +LT++ Q F + T N MK + +G N+T AD
Sbjct: 173 SDFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNAD 232
Query: 256 AMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL--SPEELREAAAKRINSVTSRY--AGK 311
A + + +N ++V GH + W + Q P+++K S E+ A I ++ Y G
Sbjct: 233 AFVDWATENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGN 292
Query: 312 LIAWDVVNENL------HFR-----FFEDNLGENASAE-FYRIAHQLDPNTIMFLNEYNT 359
L++WDVVNE + +FR F+ + + E ++ A DP I++ N+YN
Sbjct: 293 LVSWDVVNEAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAADPAVILYYNDYNI 352
Query: 360 IELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGST 419
E N K +D + + + G+G Q H + P IA + + + +
Sbjct: 353 -------EQNNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKKVVDL 405
Query: 420 GLPIWLTEVDVDIG-PNQSQY 439
GL + +TE+DV + P+ Y
Sbjct: 406 GLLVKITELDVAVNQPHCDAY 426
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 21/247 (8%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + LT+ + + F T N MKW +TE QG N+ AD ++ + ++NG
Sbjct: 19 FGVMTDQNRLTTGKNAAIIQADFGQVTPMNSMKWDATEPSQGNFNFAGADYLVNWAQQNG 78
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEE-LREAAAKRINSVTSRYAGKLIAWDVVNE---- 320
+RGH + PSWV ++ + L I ++ +RY GK+ AWDVVNE
Sbjct: 79 KLIRGHTLV--GHFYLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 136
Query: 321 --NLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
+L F + +GE+ ++ A DPN +++N+YN + K VN K+
Sbjct: 137 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNLDSASYPKTQAIVNRVKQWR 196
Query: 379 EILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLP-IWLTEVDVDIGPNQ 436
AG+ + GIG Q H S+ Q A + L +L S G P + +TE++V G +
Sbjct: 197 A-------AGVPIDGIGSQTHLSAGQG--AGVLQALPLLASAGTPEVAITELNV-AGASP 246
Query: 437 SQYLEEI 443
+ Y+ +
Sbjct: 247 TDYVNVV 253
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 119/261 (45%), Gaps = 30/261 (11%)
Query: 202 SDFPFGCGMNNY------ILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIAD 255
SDFP G ++N +LT++ Q F + T N MK + +G N+T AD
Sbjct: 173 SDFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNAD 232
Query: 256 AMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL--SPEELREAAAKRINSVTSRY--AGK 311
A + + +N ++V GH + W + Q P+++K S E+ A I ++ Y G
Sbjct: 233 AFVDWATENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGN 292
Query: 312 LIAWDVVNENL------HFR-----FFEDNLGENASAE-FYRIAHQLDPNTIMFLNEYNT 359
L++WDVVN + +FR F+ + + E ++ A DP I++ N+YN
Sbjct: 293 LVSWDVVNAAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAADPAVILYYNDYNI 352
Query: 360 IELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGST 419
E N K +D + + + G+G Q H + P IA + + + +
Sbjct: 353 -------EQNNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKKVVDL 405
Query: 420 GLPIWLTEVDVDIG-PNQSQY 439
GL + +TE+DV + P+ Y
Sbjct: 406 GLLVKITELDVAVNQPHCDAY 426
>pdb|1W2V|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W2V|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 41/259 (15%)
Query: 202 SDFPFGC-----GMNNYILTSTEYQNWFASRFKYTTFTNQMKW---YSTEKIQGEENYTI 253
+DFP G G N I TS+ QN + F T N MK YS ++T
Sbjct: 7 ADFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGSNF----SFTN 62
Query: 254 ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLI 313
+D ++ + +NG +V GH + W S Q P+W S R+ A+ I++V + +AG++
Sbjct: 63 SDRLVSWAAQNGQTVHGHTLVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVK 121
Query: 314 AWDVVNENLH--------------FR---FFEDNLGENASAEFYRIAHQLDPNTIMFLNE 356
+WDVVNE L +R F+ G E +R A DP ++ N+
Sbjct: 122 SWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYND 181
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLD- 414
+NT E A K + VN +++ N G+ + G+G Q H +D P IA +R +
Sbjct: 182 FNTEENGA-KTTALVNLVQRL-------LNNGVPIDGVGFQMHVMNDYPSIANIRQAMQK 233
Query: 415 -ILGSTGLPIWLTEVDVDI 432
+ S L I +TE+DV +
Sbjct: 234 IVALSPTLKIKITELDVRL 252
>pdb|1W3H|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W3H|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 359
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 41/259 (15%)
Query: 202 SDFPFGC-----GMNNYILTSTEYQNWFASRFKYTTFTNQMKW---YSTEKIQGEENYTI 253
+DFP G G N I TS+ QN + F T N MK YS ++T
Sbjct: 18 ADFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGSNF----SFTN 73
Query: 254 ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLI 313
+D ++ + +NG +V GH + W S Q P+W S R+ A+ I++V + +AG++
Sbjct: 74 SDRLVSWAAQNGQTVHGHTLVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVK 132
Query: 314 AWDVVNENLH--------------FR---FFEDNLGENASAEFYRIAHQLDPNTIMFLNE 356
+WDVVNE L +R F+ G E +R A DP ++ N+
Sbjct: 133 SWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYND 192
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLD- 414
+NT E A K + VN +++ N G+ + G+G Q H +D P IA +R +
Sbjct: 193 FNTEENGA-KTTALVNLVQRL-------LNNGVPIDGVGFQMHVMNDYPSIANIRQAMQK 244
Query: 415 -ILGSTGLPIWLTEVDVDI 432
+ S L I +TE+DV +
Sbjct: 245 IVALSPTLKIKITELDVRL 263
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 21/257 (8%)
Query: 228 FKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWV-- 285
F T NQMKW + + N+T A+ ++F E+N + V GH + W N Q P W+
Sbjct: 42 FNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENDMIVHGHTLVWHN--QLPGWITG 99
Query: 286 KKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLH----FR--FFEDNLGENASAEF 339
++ + EEL I +V S + G++ WDVVNE + +R + +G +
Sbjct: 100 REWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVSDSGTYRESVWYKTIGPEYIEKA 159
Query: 340 YRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGH 398
+R A + DP+ I+ N+Y+ E+ A K + N K++ E G+ + GIG Q H
Sbjct: 160 FRWAKEADPDAILIYNDYSIEEINA-KSNFVYNMIKELKE-------KGVPVDGIGFQMH 211
Query: 399 FSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIGPNQSQYLEEILREAYAHPAVKGIIS 458
+ R L+ GL I++TE+DV I + S+ E L++ A I
Sbjct: 212 IDYRGLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSE--EYYLKKQAEVCAKIFDIC 269
Query: 459 FSGPAIAGFKVMPLADK 475
PA+ + DK
Sbjct: 270 LDNPAVKAIQFWGFTDK 286
>pdb|1W32|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W32|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 41/259 (15%)
Query: 202 SDFPFGC-----GMNNYILTSTEYQNWFASRFKYTTFTNQMKW---YSTEKIQGEENYTI 253
+DFP G G N I TS+ QN + F T N MK YS ++T
Sbjct: 7 ADFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGSNF----SFTN 62
Query: 254 ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLI 313
+D ++ + +NG +V GH + W S Q P+W S R+ A+ I++V + +AG++
Sbjct: 63 SDRLVSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVK 121
Query: 314 AWDVVNENLH--------------FR---FFEDNLGENASAEFYRIAHQLDPNTIMFLNE 356
+WDVVNE L +R F+ G E +R A DP ++ N+
Sbjct: 122 SWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYND 181
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLD- 414
+NT E A K + VN +++ N G+ + G+G Q H +D P IA +R +
Sbjct: 182 FNTEENGA-KTTALVNLVQRL-------LNNGVPIDGVGFQMHVMNDYPSIANIRQAMQK 233
Query: 415 -ILGSTGLPIWLTEVDVDI 432
+ S L I +TE+DV +
Sbjct: 234 IVALSPTLKIKITELDVRL 252
>pdb|1W2P|A Chain A, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
pdb|1W2P|B Chain B, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
Length = 348
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 41/259 (15%)
Query: 202 SDFPFGC-----GMNNYILTSTEYQNWFASRFKYTTFTNQMKW---YSTEKIQGEENYTI 253
+DFP G G N I TS+ QN + F T N MK YS ++T
Sbjct: 7 ADFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGSNF----SFTN 62
Query: 254 ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLI 313
+D ++ + +NG +V GH + W S Q P+W S R+ A+ I++V + +AG++
Sbjct: 63 SDRLVSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVK 121
Query: 314 AWDVVNENLH--------------FR---FFEDNLGENASAEFYRIAHQLDPNTIMFLNE 356
+WDVVNE L +R F+ G E +R A DP ++ N+
Sbjct: 122 SWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYND 181
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLD- 414
+NT E A K + VN +++ N G+ + G+G Q H +D P IA +R +
Sbjct: 182 FNTEENGA-KTTALVNLVQRL-------LNNGVPIDGVGFQMHVMNDYPSIANIRQAMQK 233
Query: 415 -ILGSTGLPIWLTEVDVDI 432
+ S L I +TE+DV +
Sbjct: 234 IVALSPTLKIKITELDVRL 252
>pdb|1CLX|A Chain A, Catalytic Core Of Xylanase A
pdb|1CLX|B Chain B, Catalytic Core Of Xylanase A
pdb|1CLX|C Chain C, Catalytic Core Of Xylanase A
pdb|1CLX|D Chain D, Catalytic Core Of Xylanase A
Length = 347
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 41/259 (15%)
Query: 202 SDFPFGC-----GMNNYILTSTEYQNWFASRFKYTTFTNQMKW---YSTEKIQGEENYTI 253
+DFP G G N I TS+ QN + F T N MK YS ++T
Sbjct: 6 ADFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGSNF----SFTN 61
Query: 254 ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLI 313
+D ++ + +NG +V GH + W S Q P+W S R+ A+ I++V + +AG++
Sbjct: 62 SDRLVSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVK 120
Query: 314 AWDVVNENLH--------------FR---FFEDNLGENASAEFYRIAHQLDPNTIMFLNE 356
+WDVVNE L +R F+ G E +R A DP ++ N+
Sbjct: 121 SWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYND 180
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLD- 414
+NT E A K + VN +++ N G+ + G+G Q H +D P IA +R +
Sbjct: 181 FNTEENGA-KTTALVNLVQRL-------LNNGVPIDGVGFQMHVMNDYPSIANIRQAMQK 232
Query: 415 -ILGSTGLPIWLTEVDVDI 432
+ S L I +TE+DV +
Sbjct: 233 IVALSPTLKIKITELDVRL 251
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 124/269 (46%), Gaps = 30/269 (11%)
Query: 208 CGMNNYILTSTEYQNWFASRFKYTTFT--NQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
+NN+ S E + +R ++ T NQMKW + + N+T A+ ++F E+N
Sbjct: 36 AAINNFWSLSDEEKYMEVARREFNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENN 95
Query: 266 ISVRGHNIFWDNSKQQPSWV--KKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLH 323
+ V GH + W N Q P W+ ++ + EEL I +V S + G++ WDVVNE +
Sbjct: 96 MIVHGHTLVWHN--QLPGWITGREWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVS 153
Query: 324 ----FR--FFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKI 377
+R + +G + +R + DP+ I+ N+Y+ E+ A K + N K++
Sbjct: 154 DSGTYRESVWYKTIGPEYIEKAFRWTKEADPDAILIYNDYSIEEINA-KSNFVYNMIKEL 212
Query: 378 DEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIG--- 433
E G+ + GIG Q H + R L+ GL I++TE+DV I
Sbjct: 213 KE-------KGVPVDGIGFQMHIDYRGLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSG 265
Query: 434 ------PNQSQYLEEILREAYAHPAVKGI 456
Q++ +I +PAVK I
Sbjct: 266 SEDYYLKKQAEICAKIFDICLDNPAVKAI 294
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 28/246 (11%)
Query: 202 SDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFC 261
+DF G +N +T + T N MK+ + +G+ + AD ++ F
Sbjct: 14 NDFRIGAAVNP--VTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFA 71
Query: 262 EKNGISVRGHNIFWDNSKQQPSWVKK------LSPEELREAAAKRINSVTSRYAGKLIAW 315
+ ++VRGH + W N Q P WV + +S + L E I++V RY GK+ W
Sbjct: 72 CSHRMAVRGHTLVWHN--QTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCW 129
Query: 316 DVVNEN--------LHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKE 367
DV+NE L + +G++ + + A++ DP+ ++F N+YN E +K
Sbjct: 130 DVINEAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN--ECFPEK- 186
Query: 368 SNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLT 426
++KI ++ + G+ + GIG+Q H+S +P + +R+ ++ S G+ + +T
Sbjct: 187 ------REKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHIT 240
Query: 427 EVDVDI 432
E+DV +
Sbjct: 241 ELDVSM 246
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 28/246 (11%)
Query: 202 SDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFC 261
+DF G +N +T + T N MK+ + +G+ + AD ++ F
Sbjct: 14 NDFRIGAAVNP--VTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFA 71
Query: 262 EKNGISVRGHNIFWDNSKQQPSWVKK------LSPEELREAAAKRINSVTSRYAGKLIAW 315
+ ++VRGH + W N Q P WV + +S + L E I++V RY GK+ W
Sbjct: 72 CSHRMAVRGHTLVWHN--QTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCW 129
Query: 316 DVVNEN--------LHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKE 367
DV+NE L + +G++ + + A++ DP+ ++F N+YN E +K
Sbjct: 130 DVINEAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN--ECFPEK- 186
Query: 368 SNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLT 426
++KI ++ + G+ + GIG+Q H+S +P + +R+ ++ S G+ + +T
Sbjct: 187 ------REKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHIT 240
Query: 427 EVDVDI 432
E+DV +
Sbjct: 241 ELDVSM 246
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 228 FKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK 287
F T N MKW +TE +G+ ++ +D ++ F + NG +RGH + W + Q P WV
Sbjct: 41 FGQLTPENSMKWDATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLVWHS--QLPGWVSS 98
Query: 288 LSPEE-LREAAAKRINSVTSRYAGKLIAWDVVNE------NLHFRFFEDNLGENASAEFY 340
++ + L I +V +RY GK+ AWDV+NE +L F + +GE+ +
Sbjct: 99 ITDKNTLISVLKNHITTVMTRYKGKIYAWDVLNEIFNEDGSLRNSVFYNVIGEDYVRIAF 158
Query: 341 RIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHF 399
A +DPN +++N+YN K + V++ KK AG+ + GIG Q H
Sbjct: 159 ETARSVDPNAKLYINDYNLDSAGYSKVNGMVSHVKKWLA-------AGIPIDGIGSQTHL 211
Query: 400 SSDQPDIAYMRSVLDILGSTGLP-IWLTEVDVDIGPNQSQYLEEI 443
+ + + L+ L S G I +TE+D+ G + + Y+ +
Sbjct: 212 GAGA--GSAVAGALNALASAGTKEIAITELDI-AGASSTDYVNVV 253
>pdb|1XYS|A Chain A, Catalytic Core Of Xylanase A E246c Mutant
pdb|1XYS|B Chain B, Catalytic Core Of Xylanase A E246c Mutant
Length = 347
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 41/259 (15%)
Query: 202 SDFPFGC-----GMNNYILTSTEYQNWFASRFKYTTFTNQMKW---YSTEKIQGEENYTI 253
+DFP G G N I TS+ QN + F T N MK YS ++T
Sbjct: 6 ADFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGSNF----SFTN 61
Query: 254 ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLI 313
+D ++ + +NG +V GH + W S Q P+W S R+ A+ I++V + +AG++
Sbjct: 62 SDRLVSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVK 120
Query: 314 AWDVVNENLH--------------FR---FFEDNLGENASAEFYRIAHQLDPNTIMFLNE 356
+WDVVNE L +R F+ G E +R A DP ++ N+
Sbjct: 121 SWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYND 180
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLD- 414
+NT E A K + VN +++ N G+ + G+G Q H +D P IA +R +
Sbjct: 181 FNTEENGA-KTTALVNLVQRL-------LNNGVPIDGVGFQMHVMNDYPSIANIRQAMQK 232
Query: 415 -ILGSTGLPIWLTEVDVDI 432
+ S L I +T +DV +
Sbjct: 233 IVALSPTLKIKITCLDVRL 251
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 28/246 (11%)
Query: 202 SDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFC 261
+DF G +N +T + T N MK+ + +G+ + AD ++ F
Sbjct: 14 NDFRIGAAVNP--VTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFA 71
Query: 262 EKNGISVRGHNIFWDNSKQQPSWVKK------LSPEELREAAAKRINSVTSRYAGKLIAW 315
+ ++VRGH + W N Q P WV + +S + L E I++V RY GK+ W
Sbjct: 72 CSHRMAVRGHTLVWHN--QTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCW 129
Query: 316 DVVNEN--------LHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKE 367
DV+NE L + +G++ + + A++ DP+ ++F N+YN E +K
Sbjct: 130 DVINEAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN--ECFPEK- 186
Query: 368 SNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLT 426
++KI ++ + G+ + GIG+Q H+S +P + +R+ ++ S G+ + +T
Sbjct: 187 ------REKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHIT 240
Query: 427 EVDVDI 432
+DV +
Sbjct: 241 ALDVSM 246
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 28/246 (11%)
Query: 202 SDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFC 261
+DF G +N +T + T N MK+ + +G+ + AD ++ F
Sbjct: 14 NDFRIGAAVNP--VTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFA 71
Query: 262 EKNGISVRGHNIFWDNSKQQPSWVKK------LSPEELREAAAKRINSVTSRYAGKLIAW 315
+ ++VRGH + W N Q P WV + +S + L E I++V RY GK+ W
Sbjct: 72 CSHRMAVRGHTLVWHN--QTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCW 129
Query: 316 DVVNEN--------LHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKE 367
DV+NE L + +G++ + + A++ DP+ ++F N+YN E +K
Sbjct: 130 DVINEAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN--ECFPEK- 186
Query: 368 SNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLT 426
++KI ++ + G+ + GIG+Q H+S +P + +R+ ++ S G+ + +T
Sbjct: 187 ------REKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHIT 240
Query: 427 EVDVDI 432
+DV +
Sbjct: 241 ALDVSM 246
>pdb|1E5N|A Chain A, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
pdb|1E5N|B Chain B, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
Length = 348
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 41/259 (15%)
Query: 202 SDFPFGC-----GMNNYILTSTEYQNWFASRFKYTTFTNQMKW---YSTEKIQGEENYTI 253
+DFP G G N I TS+ QN + F T N MK YS ++T
Sbjct: 7 ADFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMKMSYMYSGSNF----SFTN 62
Query: 254 ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLI 313
+D ++ + +NG +V GH + W S Q P+W S R+ A+ I++V + +AG++
Sbjct: 63 SDRLVSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVK 121
Query: 314 AWDVVNENLH--------------FR---FFEDNLGENASAEFYRIAHQLDPNTIMFLNE 356
+WDVVNE L +R F+ G E +R A DP ++ N+
Sbjct: 122 SWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYND 181
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLD- 414
+NT E A K + VN +++ N G+ + G+G Q H +D P IA +R +
Sbjct: 182 FNTEENGA-KTTALVNLVQRL-------LNNGVPIDGVGFQMHVMNDYPSIANIRQAMQK 233
Query: 415 -ILGSTGLPIWLTEVDVDI 432
+ S L I +T +DV +
Sbjct: 234 IVALSPTLKIKITCLDVRL 252
>pdb|1XYZ|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
pdb|1XYZ|B Chain B, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 347
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 30/243 (12%)
Query: 203 DFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCE 262
++PF Y + Y + F N+MK+ + + Q +++ D +L F E
Sbjct: 44 NYPF------YNNSDPTYNSILQREFSMVVCENEMKFDALQPRQNVFDFSKGDQLLAFAE 97
Query: 263 KNGISVRGHNIFWDNSKQQPSWVK--KLSPEELREAAAKRINSVTSRYAGKLIAWDVVNE 320
+NG+ +RGH + W N Q PSW+ + + L I +V + Y GK++ WDV NE
Sbjct: 98 RNGMQMRGHTLIWHN--QNPSWLTNGNWNRDSLLAVMKNHITTVMTHYKGKIVEWDVANE 155
Query: 321 -------NLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAV-N 372
L + + +G++ +R A + DP+ ++F N+YN +L +SNAV N
Sbjct: 156 CMDDSGNGLRSSIWRNVIGQDYLDYAFRYAREADPDALLFYNDYNIEDLGP--KSNAVFN 213
Query: 373 YKKKIDEILSYPGNAGMSL-GIGLQGHF-SSDQPD-IAYMRSVLDILGSTGLPIWLTEVD 429
K + E G+ + G+G Q HF + P+ +A + + G+ + TE+D
Sbjct: 214 MIKSMKE-------RGVPIDGVGFQCHFINGMSPEYLASIDQNIKRYAEIGVIVSFTEID 266
Query: 430 VDI 432
+ I
Sbjct: 267 IRI 269
>pdb|3U7B|A Chain A, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|B Chain B, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|C Chain C, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|D Chain D, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|E Chain E, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
Length = 327
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 111/237 (46%), Gaps = 29/237 (12%)
Query: 232 TFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK--LS 289
T N MKW + + +G+ N+ AD G +R H + W + Q PSWV +
Sbjct: 43 TPENAMKWEAIQPNRGQFNWGPADQHAAAATSRGYELRCHTLVWHS--QLPSWVANGNWN 100
Query: 290 PEELREAAAKRINSVTSRYAGKLIAWDVVNENLH----FR--FFEDNLGENASAEFYRIA 343
+ L+ IN+V RY GK WDVVNE L+ +R F +GE +R+A
Sbjct: 101 NQTLQAVMRDHINAVMGRYRGKCTHWDVVNEALNEDGTYRDSVFLRVIGEAYIPIAFRMA 160
Query: 344 HQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEIL-SYPGNAGMSL-GIGLQGHFSS 401
DP T ++ N+YN +E K A K+I ++ SY G+ + GIGLQ H +S
Sbjct: 161 LAADPTTKLYYNDYN-LEYGNAKTEGA----KRIARLVKSY----GLRIDGIGLQAHMTS 211
Query: 402 DQ--------PDIAYMRSVLDILGSTGLPIWLTEVDVDIGPNQSQYLEEILREAYAH 450
+ P A + SVL L G+ + TE+D+ + +Q + +AYA
Sbjct: 212 ESTPTQNTPTPSRAKLASVLQGLADLGVDVAYTELDIRMNTPATQQKLQTNADAYAR 268
>pdb|1V6Y|A Chain A, Crystal Structure Of Chimeric Xylanase Between
Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas
Fimi Cex
Length = 324
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 24/236 (10%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + + L + Y + F T N+MK +TE +G+ N++ D + + +NG
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR 325
VRGH + W + QQP W++ LS LR+A IN V Y GK+ WDVVNE
Sbjct: 76 KQVRGHTLAWHS--QQPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNEA---- 129
Query: 326 FFEDNLGENASAEF-----------YRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYK 374
F +D G + +R A DP + N+YN K N
Sbjct: 130 FSDDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKTQGVYNMV 189
Query: 375 KKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDV 430
+ + P + +G Q H Q + R L G+ + +TE+D+
Sbjct: 190 RDFKQ-RGVPIDC-----VGFQSHLIVGQVPGDF-RQNLQRFADLGVDVRITELDI 238
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG + LT+ + + F N MKW +TE QG N+ AD ++ + ++NG
Sbjct: 18 FGVATDQNRLTTGKNAAIIQADFGMVWPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEE-LREAAAKRINSVTSRYAGKLIAWDVVNE---- 320
+ G + W + Q PSWV ++ + L I ++ +RY GK+ AWDVV E
Sbjct: 78 KLIGGGMLVWHS--QLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVGEAFNE 135
Query: 321 --NLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
+L F + +GE+ ++ A DPN +++ +YN + K VN K+
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYIMDYNLDSASYPKTQAIVNRVKQWR 195
Query: 379 EILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLP 422
AG+ + GIG Q H S+ Q A + L +L S G P
Sbjct: 196 A-------AGVPIDGIGSQTHLSAGQG--AGVLQALPLLASAGTP 231
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 17/232 (7%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG ++ L+ +Y+ S F N MKW +TE Q ++ D + + G
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENL--- 322
+ GH + W + Q P W K L+ A + V + GK+ +WDVVNE
Sbjct: 75 KELYGHTLVWHS--QLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADG 132
Query: 323 ----HFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
F+ LG +R A DP + +N+YN + A +SN++ D
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNVEGINA--KSNSL-----YD 185
Query: 379 EILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDV 430
+ + +G Q H Q + R L G+ + +TE+D+
Sbjct: 186 LVKDFKARGVPLDCVGFQSHLIVGQVPGDF-RQNLQRFADLGVDVRITELDI 236
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The Beta-1,4-
Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 17/232 (7%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG ++ L+ +Y+ S F N MKW +TE Q ++ D + + G
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENL--- 322
+ GH + W + Q P W K L+ A + V + GK+ +WDVVNE
Sbjct: 75 KELYGHTLVWHS--QLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADG 132
Query: 323 ----HFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKID 378
F+ LG +R A DP + +N+YN + A +SN++ D
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNVEGINA--KSNSL-----YD 185
Query: 379 EILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDV 430
+ + +G Q H Q + R L G+ + +TE+D+
Sbjct: 186 LVKDFKARGVPLDCVGFQSHLIVGQVPGDF-RQNLQRFADLGVDVRITELDI 236
>pdb|2HIS|A Chain A, Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT
E127aH205N WITH COVALENT CELLOBIOSE
Length = 312
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 9/161 (5%)
Query: 206 FGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNG 265
FG ++ L+ +Y+ S F N MKW +TE Q ++ D + + G
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 266 ISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENL--- 322
+ GH + W + Q P W K L+ A + V + GK+ +WDVVN
Sbjct: 75 KELYGHTLVWHS--QLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNAAFADG 132
Query: 323 ----HFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNT 359
F+ LG +R A DP + +N+YN
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNV 173
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 110/257 (42%), Gaps = 36/257 (14%)
Query: 201 KSDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQF 260
K++F G + Y L + + F N MK S + +G+ N+ AD +++F
Sbjct: 25 KNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKF 84
Query: 261 CEKNGISVRGHNIFWDNSKQQPSW----------VKKLSP---EELREAAAKR----INS 303
+ NG+ +R H + W Q P W V + P E+ ++ KR I +
Sbjct: 85 AKANGMDIRFHTLVW--HSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKT 142
Query: 304 VTSRYAGKLIAWDVVNENL--HFRFFEDNLGENASAEFYRIAHQL-----DPNTIMFLNE 356
+ RY + WDVVNE + + + A ++ ++A Q N +++N+
Sbjct: 143 IVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMND 202
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDI 415
YNT K + N K++ E G+ + GIG Q H P A + +++
Sbjct: 203 YNT--EVEPKRTALYNLVKQLKE-------EGVPIDGIGHQSHIQIGAPSEAEIEKTINM 253
Query: 416 LGSTGLPIWLTEVDVDI 432
+ GL +TE+DV +
Sbjct: 254 FAALGLDNQITELDVSM 270
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
(Monoclinic Form) At 1.45a Resolution
pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The Complex Of The Wt Enzyme With Xylopentaose At
1.67a Resolution
Length = 379
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 110/257 (42%), Gaps = 36/257 (14%)
Query: 201 KSDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQF 260
K++F G + Y L + + F N MK S + +G+ N+ AD +++F
Sbjct: 25 KNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKF 84
Query: 261 CEKNGISVRGHNIFWDNSKQQPSW----------VKKLSP---EELREAAAKR----INS 303
+ NG+ +R H + W Q P W V + P E+ ++ KR I +
Sbjct: 85 AKANGMDIRFHTLVW--HSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKT 142
Query: 304 VTSRYAGKLIAWDVVNENL--HFRFFEDNLGENASAEFYRIAHQL-----DPNTIMFLNE 356
+ RY + WDVVNE + + + A ++ ++A Q N +++N+
Sbjct: 143 IVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMND 202
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDI 415
YNT K + N K++ E G+ + GIG Q H P A + +++
Sbjct: 203 YNT--EVEPKRTALYNLVKQLKE-------EGVPIDGIGHQSHIQIGWPSEAEIEKTINM 253
Query: 416 LGSTGLPIWLTEVDVDI 432
+ GL +TE+DV +
Sbjct: 254 FAALGLDNQITELDVSM 270
>pdb|2F8Q|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2F8Q|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 353
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 40/227 (17%)
Query: 235 NQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWV--------- 285
N MK S + +G + ADA+++F KN +++R H + W N Q P W
Sbjct: 48 NAMKPISLQPEEGVFTWDGADAIVEFARKNNMNLRFHTLVWHN--QVPDWFFLDEEGNPM 105
Query: 286 --------KKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENL-----HFRFFEDNLG 332
++ + E L E I +V RY + AWDVVNE + + R +++
Sbjct: 106 VEETNEAKRQANKELLLERLETHIKTVVERYKDDVTAWDVVNEVVDDGTPNERGLRESVW 165
Query: 333 ENASA-EFYRIAHQL-----DPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGN 386
+ E+ R+A + + +F+N+YNT E+ ++ + + ++L+
Sbjct: 166 YQITGDEYIRVAFETARKYAGEDAKLFINDYNT-EVTPKRD----HLYNLVQDLLA---- 216
Query: 387 AGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDI 432
G+ + G+G Q H D P I +R+ +++ GL +TE+DV +
Sbjct: 217 DGVPIDGVGHQAHIQIDWPTIDEIRTSMEMFAGLGLDNQVTELDVSL 263
>pdb|2FGL|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2FGL|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 354
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 40/227 (17%)
Query: 235 NQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWV--------- 285
N MK S + +G + ADA+++F KN +++R H + W N Q P W
Sbjct: 49 NAMKPISLQPEEGVFTWDGADAIVEFARKNNMNLRFHTLVWHN--QVPDWFFLDEEGNPM 106
Query: 286 --------KKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENL-----HFRFFEDNLG 332
++ + E L E I +V RY + AWDVVNE + + R +++
Sbjct: 107 VEETNEAKRQANKELLLERLETHIKTVVERYKDDVTAWDVVNEVVDDGTPNERGLRESVW 166
Query: 333 ENASA-EFYRIAHQL-----DPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGN 386
+ E+ R+A + + +F+N+YNT E+ ++ + + ++L+
Sbjct: 167 YQITGDEYIRVAFETARKYAGEDAKLFINDYNT-EVTPKRD----HLYNLVQDLLA---- 217
Query: 387 AGMSL-GIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDI 432
G+ + G+G Q H D P I +R+ +++ GL +TE+DV +
Sbjct: 218 DGVPIDGVGHQAHIQIDWPTIDEIRTSMEMFAGLGLDNQVTELDVSL 264
>pdb|1R86|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The E159aE265A MUTANT AT 1.8A RESOLUTION
Length = 379
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 108/257 (42%), Gaps = 36/257 (14%)
Query: 201 KSDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQF 260
K++F G + Y L + + F N MK S + +G+ N+ AD +++F
Sbjct: 25 KNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKF 84
Query: 261 CEKNGISVRGHNIFWDNSKQQPSW----------VKKLSP---EELREAAAKR----INS 303
+ NG+ +R H + W Q P W V + P E+ ++ KR I +
Sbjct: 85 AKANGMDIRFHTLVW--HSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKT 142
Query: 304 VTSRYAGKLIAWDVVNENL--HFRFFEDNLGENASAEFYRIAHQL-----DPNTIMFLNE 356
+ RY + WDVVN + + + A ++ ++A Q N +++N+
Sbjct: 143 IVERYKDDIKYWDVVNAVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMND 202
Query: 357 YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSVLDI 415
YNT K + N K++ E G+ + GIG Q H P A + +++
Sbjct: 203 YNT--EVEPKRTALYNLVKQLKE-------EGVPIDGIGHQSHIQIGWPSEAEIEKTINM 253
Query: 416 LGSTGLPIWLTEVDVDI 432
+ GL +T +DV +
Sbjct: 254 FAALGLDNQITALDVSM 270
>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
Length = 341
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 38/266 (14%)
Query: 201 KSDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQF 260
K+DF G ++ L T + T N MK + + +G +T ADAM+
Sbjct: 12 KNDFLIGNAISAEDLEGTRLE-LLKMHHDVVTAGNAMKPDALQPTKGNFTFTAADAMIDK 70
Query: 261 CEKNGISVRGHNIFWDNSKQQPSWVK----------KLSPEELREAAAKRINSVTSRYAG 310
G+ + GH + W +Q P+W+ L +E + I +V +
Sbjct: 71 VLAEGMKMHGHVLVW--HQQSPAWLNTKKDDNNNTVPLGRDEALDNLRTHIQTVMKHFGN 128
Query: 311 KLIAWDVVNE--------------NLHFRFFEDNLGENASAEFYRIAHQL---DP--NTI 351
K+I+WDVVNE +L + +G + + + A ++ +P N
Sbjct: 129 KVISWDVVNEAMNDNPSNPADYKASLRQTPWYQAIGSDYVEQAFLAAREVLDENPSWNIK 188
Query: 352 MFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFS-SDQPDIAYM 409
++ N+YN E +K + N K I++ + N + + G+G+QGH++ + PD +
Sbjct: 189 LYYNDYN--EDNQNKATAIYNMVKDINDRYAAAHNGKLLIDGVGMQGHYNINTNPD--NV 244
Query: 410 RSVLDILGSTGLPIWLTEVDVDIGPN 435
+ L+ S G+ + ++E+DV G N
Sbjct: 245 KLSLEKFISLGVEVSVSELDVTAGNN 270
>pdb|2UWF|A Chain A, Crystal Structure Of Family 10 Xylanase From Bacillus
Halodurans
Length = 356
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 102/260 (39%), Gaps = 49/260 (18%)
Query: 204 FPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEK 263
F G + Y L + Q + N MK S + +GE N+ AD +++F K
Sbjct: 19 FDIGAAVEPYQLEGRQAQI-LKHHYNSLVAENAMKPVSLQPREGEWNWEGADKIVEFARK 77
Query: 264 NGISVRGHNIFWDNSKQQPSW----------VKKLSPEE-------LREAAAKRINSVTS 306
+ + +R H + W Q P W V + PE+ L E I +V
Sbjct: 78 HNMELRFHTLVW--HSQVPEWFFIDENGNRMVDETDPEKRKANKQLLLERMENHIKTVVE 135
Query: 307 RYAGKLIAWDVVNENLHFRFFEDNLGENASAEFYRIA-------------HQLDPNTIMF 353
RY + +WDVVNE + D+ G +E+Y+I ++
Sbjct: 136 RYKDDVTSWDVVNEVI------DDDGGLRESEWYQITGTDYIKVAFETARKYGGEEAKLY 189
Query: 354 LNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRSV 412
+N+YNT K + N K + E G+ + G+G Q H P I R+
Sbjct: 190 INDYNT--EVPSKRDDLYNLVKDLLE-------QGVPIDGVGHQSHIQIGWPSIEDTRAS 240
Query: 413 LDILGSTGLPIWLTEVDVDI 432
+ S GL +TE+D+ +
Sbjct: 241 FEKFTSLGLDNQVTELDMSL 260
>pdb|4F8X|A Chain A, Penicillium Canescens Endo-1,4-Beta-Xylanase Xyle
Length = 335
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 21/228 (9%)
Query: 216 TSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFW 275
T Y F T N MK+ TE Q N+T + L+ E+ G VR HN+ W
Sbjct: 29 TDAAYLKVLKQNFGEITPANAMKFMYTETEQNVFNFTEGEQFLEVAERFGSKVRCHNLVW 88
Query: 276 DNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLH------FRFFED 329
+ K + +EL I + + +WDVVNE L+ + D
Sbjct: 89 ASQVSDFVTSKTWTAKELTAVMKNHIFKTVQHFGRRCYSWDVVNEALNGDGTFSSSVWYD 148
Query: 330 NLGENASAEFYRIAH----QLDPNTI-MFLNEYNTIELAADKESNAVNYKKKIDEILSYP 384
+GE ++ A Q+ N + ++ N+Y IE K + + +++S
Sbjct: 149 TIGEEYFYLAFKYAQEALAQIGANDVKLYYNDYG-IENPGTKSTAVL-------QLVSNL 200
Query: 385 GNAGMSL-GIGLQGHF-SSDQPDIAYMRSVLDILGSTGLPIWLTEVDV 430
G+ + G+GL+ HF + P +A + L + +TE+DV
Sbjct: 201 RKRGIRIDGVGLESHFIVGETPSLADQLATKQAYIKANLDVAVTELDV 248
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 49/261 (18%)
Query: 204 FPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEK 263
FP G + T+ + + N MK S + +G + AD ++QF ++
Sbjct: 16 FPIGAAIEPG-YTTGQIAELYKKHVNMLVAENAMKPASLQPTEGNFQWADADRIVQFAKE 74
Query: 264 NGISVRGHNIFWDNSKQQPSW----------VKKLSP---EELREAAAKR----INSVTS 306
NG+ +R H + W N Q P W V++ P EE R+ +R I +V
Sbjct: 75 NGMELRFHTLVWHN--QTPDWFFLDKEGKPMVEETDPQKREENRKLLLQRLENYIRAVVL 132
Query: 307 RYAGKLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADK 366
RY + +WDVVNE + ++ G ++ +Y+I EY + A +
Sbjct: 133 RYKDDIKSWDVVNEVIE----PNDPGGMRNSPWYQITG----------TEYIEVAFRATR 178
Query: 367 ESNAVNYKKKID--------------EILSYPGNAGMSL-GIGLQGHFSSDQPDIAYMRS 411
E+ + K I+ E++ G+ + G+G Q H P + +
Sbjct: 179 EAGGSDIKLYINDYNTDDPVKRDILYELVKNLLEKGVPIDGVGHQTHIDIYNPPVERIIE 238
Query: 412 VLDILGSTGLPIWLTEVDVDI 432
+ GL +TE+D+ I
Sbjct: 239 SIKKFAGLGLDNIITELDMSI 259
>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
Length = 540
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 101/471 (21%), Positives = 185/471 (39%), Gaps = 88/471 (18%)
Query: 14 PRRAHYGGGLIVNPEFNRGTEGWTAFGQAAIREATSEEGN---KYIVAHSRTNPLD-SFS 69
PR +H +V+ F +GW G A EGN + ++ +R++ D ++S
Sbjct: 16 PRGSH-ADYEVVHDTFEVNFDGWCNLGVDTYLTAVENEGNNGTRGMMVINRSSASDGAYS 74
Query: 70 QK-VQLEKGKLYSFSAWIQVS-RGSDTVAAVFKTSDGKLIDAGK-VLAKH----GCWSLL 122
+K L+ G Y +S +++ + G++T D + + K V+A G W+ +
Sbjct: 75 EKGFYLDGGVEYKYSVFVKHNGTGTETFKLSVSYLDSETEEENKEVIATKDVVAGEWTEI 134
Query: 123 KGGLAANFTSLVEILFESKNAEMEIWADSVSLQPFTKEQWRSHQDKSINKERKRKVRFQL 182
A T++ L + ++ ++ D V++ R +
Sbjct: 135 SAKYKAPKTAVNITLSITTDSTVDFIFDDVTI-----------------------TRKGM 171
Query: 183 TSANKTALEGAVVSVTQIKSDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYST 242
AN AV+ + F G +N+ + ++ + F T N+MK +T
Sbjct: 172 AEANTVYAANAVLK-DMYANYFRVGSVLNSGTVNNSSIKALILREFNSITCENEMKPDAT 230
Query: 243 EKIQGEENYTI------ADAMLQFCEKNGISVRGHNIFW----------DNSKQQPSWVK 286
G N I A ++L FC +N I+VRGH + W DN + +WV
Sbjct: 231 LVQSGSTNTNIRVSLNRAASILNFCAQNNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWVS 290
Query: 287 KLSPEELREAAAKRINSVTSRY--AGKLIAWDVVNENL-----HFRFF----EDNLGENA 335
+ ++ E+ K + + R + L A+DVVN + R++ E G
Sbjct: 291 QSVMDQRLESYIKNMFAEIQRQYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGR 350
Query: 336 SA------------EFYRIAHQLDP-NTIMFLNEYNTIELAADKESNAVNYKKKIDEILS 382
S + + A + P N ++ N+YN E K + I I +
Sbjct: 351 SPWVQIYGDNKFIEKAFTYARKYAPANCKLYYNDYN--EYWDHK-------RDCIASICA 401
Query: 383 YPGNAGMSLGIGLQGHFSSDQ---PDIAYMRSVLDILGSTGLPIWLTEVDV 430
N G+ G+G+Q H ++D I ++ L + G + +TE+D+
Sbjct: 402 NLYNKGLLDGVGMQSHINADMNGFSGIQNYKAALQKYINIGCDVQITELDI 452
>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
Length = 540
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 52/270 (19%)
Query: 204 FPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTI------ADAM 257
F G +N+ + ++ + F T N+ K +T G N I A ++
Sbjct: 192 FRVGSVLNSGTVNNSSIKALILREFNSITCENEXKPDATLVQSGSTNTNIRVSLNRAASI 251
Query: 258 LQFCEKNGISVRGHNIFW----------DNSKQQPSWVKKLSPEELREAAAKR-INSVTS 306
L FC +N I+VRGH + W DN + +WV + ++ E+ K +
Sbjct: 252 LNFCAQNNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWVSQSVXDQRLESYIKNXFAEIQR 311
Query: 307 RYAG-KLIAWDVVNENL-----HFRFF----EDNLGENASA------------EFYRIAH 344
+Y L A+DVVN + R++ E G S + + A
Sbjct: 312 QYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFTYAR 371
Query: 345 QLDP-NTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQ 403
+ P N ++ N+YN E K + I I + N G+ G+G Q H ++D
Sbjct: 372 KYAPANCKLYYNDYN--EYWDHK-------RDCIASICANLYNKGLLDGVGXQSHINADX 422
Query: 404 ---PDIAYMRSVLDILGSTGLPIWLTEVDV 430
I ++ L + G + +TE+D+
Sbjct: 423 NGFSGIQNYKAALQKYINIGCDVQITELDI 452
>pdb|1ZUA|X Chain X, Crystal Structure Of Akr1b10 Complexed With Nadp+ And
Tolrestat
Length = 317
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 228 FKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK 287
KY TNQ++ + Y + ++Q+C GI+V ++ S +P W K
Sbjct: 177 LKYKPVTNQVECHP---------YLTQEKLIQYCHSKGITVTAYSPL--GSPDRP-WAKP 224
Query: 288 LSPEELREAAAKRINSVTSRYAGKLI 313
P L + K I + + A +++
Sbjct: 225 EDPSLLEDPKIKEIAAKHKKTAAQVL 250
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 288 LSPEELR-EAAAKRINSVTSRYAGKLIAWDVVNENLHFRFFED 329
L+P+ +R + A INS+ S G+ +AWD V N + F+D
Sbjct: 784 LNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWK-KLFQD 825
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 288 LSPEELR-EAAAKRINSVTSRYAGKLIAWDVVNENLHFRFFED 329
L+P+ +R + A INS+ S G+ +AWD V N + F+D
Sbjct: 784 LNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWK-KLFQD 825
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 288 LSPEELR-EAAAKRINSVTSRYAGKLIAWDVVNENLHFRFFED 329
L+P+ +R + A INS+ S G+ +AWD V N + F+D
Sbjct: 785 LNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWK-KLFQD 826
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 288 LSPEELR-EAAAKRINSVTSRYAGKLIAWDVVNENLHFRFFED 329
L+P+ +R + A INS+ S G+ +AWD V N + F+D
Sbjct: 828 LNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWK-KLFQD 869
>pdb|3UP6|A Chain A, Crystal Structure Of A Hypothetical Protein Bacova_04078
[bacteroides Ovatus Atcc 8483] (Zp_02067074.1, Sp17169a,
Jcsg 417104) From Bacteroides Ovatus Atcc 8483 At 2.80 A
Resolution
pdb|3UP6|B Chain B, Crystal Structure Of A Hypothetical Protein Bacova_04078
[bacteroides Ovatus Atcc 8483] (Zp_02067074.1, Sp17169a,
Jcsg 417104) From Bacteroides Ovatus Atcc 8483 At 2.80 A
Resolution
Length = 347
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 345 QLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQG--HFSSD 402
+LD N + L+ T E A D ++ + D ++ N SL L G + +
Sbjct: 48 RLDVNEHILLS---TPETATDIDAQLLEVTSSNDILVVVIANEPQSLTSQLDGIANLLTL 104
Query: 403 QPDIAYMRSVLD----ILGSTGLPIWLTEVDVDIGPNQSQYLEEILREAYAHPAVKGIIS 458
Q I + S+L+ I+ +TG P D+ I P++++ ++ ++ A A V I +
Sbjct: 105 QEXIYDISSILNSDGQIISATGXPXTGVIRDISIAPDETKTVQXVIERAVARVDVF-IEA 163
Query: 459 FSGPAIAGF 467
G A+ G+
Sbjct: 164 IDGGAVTGY 172
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 434 PNQSQYLEEILREAYAHPAVKGIISFSGPAIAGFKVMPLADKDFKNTPAGDVVDKLL 490
P ++ + E+L++A + +KGII +S +PL DF+ T +VD L
Sbjct: 254 PTITEQVNEVLQKA-SQTTMKGIIKYSD--------LPLVSSDFRGTDESSIVDSSL 301
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 434 PNQSQYLEEILREAYAHPAVKGIISFSGPAIAGFKVMPLADKDFKNTPAGDVVDKLL 490
P ++ + E+L++A + +KGII +S +PL DF+ T +VD L
Sbjct: 254 PTITEQVNEVLQKA-SQTTMKGIIKYSD--------LPLVSSDFRGTDESSIVDSSL 301
>pdb|2PPQ|A Chain A, Crystal Structure Of The Homoserine Kinase From
Agrobacterium Tumefaciens
Length = 322
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 264 NGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNENLH 323
N +SV G + WD S+++ V+K LRE I+ + + + L A + H
Sbjct: 141 NALSVDGWKVLWDKSEERADEVEK----GLREEIRPEIDYLAAHWPKDLPAGVI-----H 191
Query: 324 FRFFEDN---LGENASA--EFYRIAHQL 346
F+DN LG+ S +FY + L
Sbjct: 192 ADLFQDNVFFLGDELSGLIDFYFACNDL 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,880,116
Number of Sequences: 62578
Number of extensions: 712576
Number of successful extensions: 1945
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1775
Number of HSP's gapped (non-prelim): 69
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)