Query 008838
Match_columns 551
No_of_seqs 342 out of 1717
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 17:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00331 Glyco_hydro_10: Glyco 100.0 5.8E-67 1.3E-71 538.1 22.6 278 200-488 6-318 (320)
2 COG3693 XynA Beta-1,4-xylanase 100.0 6E-62 1.3E-66 476.8 25.5 258 223-490 53-341 (345)
3 smart00633 Glyco_10 Glycosyl h 100.0 4.8E-57 1E-61 451.3 25.8 241 237-486 1-254 (254)
4 PF02018 CBM_4_9: Carbohydrate 99.7 1.1E-15 2.4E-20 136.3 17.0 119 21-141 1-127 (131)
5 PF07745 Glyco_hydro_53: Glyco 99.6 2.4E-13 5.1E-18 139.4 23.8 248 221-486 30-332 (332)
6 PF00150 Cellulase: Cellulase 99.5 6.6E-12 1.4E-16 126.8 21.5 233 206-462 11-278 (281)
7 PF02449 Glyco_hydro_42: Beta- 99.3 3.9E-11 8.5E-16 126.9 19.2 248 223-493 19-371 (374)
8 TIGR03356 BGL beta-galactosida 99.3 2.2E-10 4.8E-15 122.8 22.5 248 225-478 65-414 (427)
9 PF01229 Glyco_hydro_39: Glyco 99.3 2.7E-10 5.8E-15 124.5 21.9 244 227-489 53-359 (486)
10 PLN02998 beta-glucosidase 99.1 7.4E-09 1.6E-13 112.6 23.6 263 223-492 90-487 (497)
11 PRK13511 6-phospho-beta-galact 99.1 1.9E-08 4.1E-13 109.2 25.0 262 222-492 61-465 (469)
12 PF00232 Glyco_hydro_1: Glycos 99.1 1.3E-09 2.9E-14 118.0 14.2 260 226-492 70-452 (455)
13 PRK10150 beta-D-glucuronidase; 99.1 3.7E-08 8E-13 110.7 25.2 227 226-490 325-592 (604)
14 PLN02849 beta-glucosidase 99.0 5.1E-08 1.1E-12 106.3 24.4 264 223-492 87-482 (503)
15 TIGR01233 lacG 6-phospho-beta- 99.0 9.3E-08 2E-12 103.6 26.0 264 222-492 60-463 (467)
16 PRK09852 cryptic 6-phospho-bet 99.0 8.5E-08 1.8E-12 103.9 24.3 265 222-492 78-468 (474)
17 PRK09593 arb 6-phospho-beta-gl 99.0 1.6E-07 3.4E-12 102.1 25.7 265 222-492 80-472 (478)
18 PLN02814 beta-glucosidase 99.0 8.2E-08 1.8E-12 104.7 23.3 265 222-492 84-482 (504)
19 PRK09589 celA 6-phospho-beta-g 99.0 1.6E-07 3.4E-12 102.0 24.5 261 222-492 74-471 (476)
20 PRK15014 6-phospho-beta-glucos 98.9 3.3E-07 7.1E-12 99.5 25.3 266 221-492 75-472 (477)
21 PF11790 Glyco_hydro_cc: Glyco 98.9 7.6E-08 1.6E-12 95.5 16.8 164 309-485 63-238 (239)
22 COG3867 Arabinogalactan endo-1 98.7 2.2E-06 4.7E-11 84.5 19.3 273 200-488 35-393 (403)
23 PF02836 Glyco_hydro_2_C: Glyc 98.5 4.9E-06 1.1E-10 85.4 17.2 214 225-490 47-293 (298)
24 COG2723 BglB Beta-glucosidase/ 98.4 1.3E-05 2.8E-10 85.0 19.2 264 222-491 66-451 (460)
25 PF01301 Glyco_hydro_35: Glyco 98.4 3.7E-05 8.1E-10 79.5 21.4 258 204-492 10-318 (319)
26 PF04862 DUF642: Protein of un 98.4 6.5E-06 1.4E-10 76.4 14.2 128 22-155 1-159 (159)
27 PLN03089 hypothetical protein; 98.1 4.2E-05 9.1E-10 79.4 13.8 142 10-158 16-187 (373)
28 PLN03089 hypothetical protein; 98.1 7.8E-05 1.7E-09 77.4 14.4 136 17-158 190-366 (373)
29 PRK10340 ebgA cryptic beta-D-g 97.8 0.0013 2.8E-08 78.2 21.5 201 225-491 366-600 (1021)
30 PLN03059 beta-galactosidase; P 97.6 0.00065 1.4E-08 77.2 13.1 148 204-356 45-222 (840)
31 PF12876 Cellulase-like: Sugar 97.5 0.00015 3.4E-09 60.3 4.5 53 304-356 1-64 (88)
32 PF02055 Glyco_hydro_30: O-Gly 97.4 0.021 4.5E-07 62.6 21.6 259 257-541 158-476 (496)
33 PRK09525 lacZ beta-D-galactosi 97.2 0.044 9.5E-07 65.4 22.4 213 225-491 382-626 (1027)
34 PF14587 Glyco_hydr_30_2: O-Gl 97.1 0.03 6.6E-07 58.6 17.3 217 241-464 90-359 (384)
35 KOG0626 Beta-glucosidase, lact 97.0 0.062 1.3E-06 58.2 19.7 95 223-323 99-204 (524)
36 COG1874 LacA Beta-galactosidas 96.9 0.003 6.5E-08 70.7 9.2 117 201-321 13-161 (673)
37 cd06263 MAM Meprin, A5 protein 96.4 0.1 2.2E-06 47.8 14.3 127 28-156 2-154 (157)
38 smart00137 MAM Domain in mepri 96.2 0.17 3.8E-06 46.8 14.2 129 26-156 5-158 (161)
39 PF00629 MAM: MAM domain; Int 96.0 0.16 3.5E-06 46.0 13.0 127 28-156 2-155 (160)
40 PF03425 CBM_11: Carbohydrate 95.8 0.092 2E-06 49.6 10.8 129 27-158 8-171 (178)
41 COG3664 XynB Beta-xylosidase [ 95.2 0.056 1.2E-06 56.5 7.5 232 227-487 18-289 (428)
42 COG3934 Endo-beta-mannanase [C 95.1 0.031 6.8E-07 59.2 5.2 222 250-495 65-324 (587)
43 PF13204 DUF4038: Protein of u 94.9 0.1 2.3E-06 53.3 8.6 223 204-457 14-279 (289)
44 PF15425 DUF4627: Domain of un 94.8 1.3 2.8E-05 41.2 14.1 135 20-155 5-211 (212)
45 COG2730 BglC Endoglucanase [Ca 93.9 0.5 1.1E-05 50.7 11.4 118 223-350 82-219 (407)
46 PLN00197 beta-amylase; Provisi 93.4 0.75 1.6E-05 50.1 11.4 63 221-286 134-206 (573)
47 KOG0496 Beta-galactosidase [Ca 93.4 0.19 4.1E-06 55.6 7.1 116 204-322 35-176 (649)
48 COG5520 O-Glycosyl hydrolase [ 93.2 0.75 1.6E-05 47.3 10.3 181 261-463 111-311 (433)
49 PLN02801 beta-amylase 92.3 2 4.4E-05 46.4 12.7 63 221-286 44-116 (517)
50 PLN02161 beta-amylase 91.8 1.3 2.8E-05 48.0 10.5 64 220-286 123-196 (531)
51 PLN02803 beta-amylase 91.4 1.4 3.1E-05 47.9 10.4 64 220-286 113-186 (548)
52 PF03422 CBM_6: Carbohydrate b 89.0 12 0.00026 32.5 12.9 85 68-155 34-124 (125)
53 PF09212 CBM27: Carbohydrate b 88.9 8.6 0.00019 36.0 12.2 129 26-155 10-168 (170)
54 PF13620 CarboxypepD_reg: Carb 88.8 1.9 4.1E-05 34.6 7.0 42 498-540 30-73 (82)
55 PF14299 PP2: Phloem protein 2 88.8 3.6 7.7E-05 37.9 9.6 84 73-156 55-153 (154)
56 PLN02705 beta-amylase 88.0 1.2 2.6E-05 49.0 6.7 64 220-286 274-347 (681)
57 PLN02905 beta-amylase 87.8 1.2 2.7E-05 49.1 6.7 63 221-286 293-365 (702)
58 PF02057 Glyco_hydro_59: Glyco 87.6 16 0.00036 41.2 15.4 228 256-521 116-368 (669)
59 PF07675 Cleaved_Adhesin: Clea 87.0 22 0.00049 33.0 14.0 126 24-154 2-167 (167)
60 PF01373 Glyco_hydro_14: Glyco 86.1 0.76 1.6E-05 48.6 3.8 94 220-320 22-149 (402)
61 PF04620 FlaA: Flagellar filam 85.8 16 0.00035 35.6 12.5 77 49-125 71-153 (217)
62 PF02638 DUF187: Glycosyl hydr 83.9 26 0.00056 36.2 14.0 182 225-418 30-281 (311)
63 PF09092 Lyase_N: Lyase, N ter 83.6 9.1 0.0002 36.1 9.4 129 25-157 8-164 (178)
64 PF00332 Glyco_hydro_17: Glyco 83.5 1.5 3.2E-05 45.3 4.6 58 256-324 38-98 (310)
65 PF14488 DUF4434: Domain of un 78.3 51 0.0011 30.7 12.6 135 214-358 16-163 (166)
66 PF08400 phage_tail_N: Prophag 76.2 5.3 0.00012 35.8 5.0 47 498-544 39-85 (134)
67 PF12891 Glyco_hydro_44: Glyco 74.6 6.4 0.00014 38.8 5.6 59 296-354 105-177 (239)
68 PF05688 DUF824: Salmonella re 73.3 5.1 0.00011 29.1 3.4 23 177-199 16-38 (47)
69 smart00812 Alpha_L_fucos Alpha 72.7 26 0.00056 37.4 10.1 93 252-356 128-233 (384)
70 PF13715 DUF4480: Domain of un 71.9 19 0.00042 29.1 7.2 40 498-538 27-66 (88)
71 smart00560 LamGL LamG-like jel 71.2 21 0.00046 31.6 7.9 13 79-91 2-14 (133)
72 TIGR01370 cysRS possible cyste 69.7 42 0.00092 34.7 10.6 141 291-450 143-296 (315)
73 PF14871 GHL6: Hypothetical gl 68.9 28 0.0006 31.2 8.0 91 219-309 4-124 (132)
74 COG2342 Predicted extracellula 68.3 68 0.0015 32.4 11.1 216 216-461 32-280 (300)
75 PF01120 Alpha_L_fucos: Alpha- 64.1 44 0.00096 35.0 9.7 92 252-355 138-244 (346)
76 smart00606 CBD_IV Cellulose Bi 59.8 1.2E+02 0.0025 26.4 12.2 77 72-153 47-128 (129)
77 PF15432 Sec-ASP3: Accessory S 59.4 1.2E+02 0.0025 27.1 10.0 78 71-156 46-126 (128)
78 smart00634 BID_1 Bacterial Ig- 57.1 12 0.00027 30.9 3.3 29 175-203 19-47 (92)
79 PF10648 Gmad2: Immunoglobulin 56.9 1.1E+02 0.0024 25.2 9.0 62 79-142 17-84 (88)
80 PF07691 PA14: PA14 domain; I 55.9 48 0.001 29.2 7.3 38 121-159 49-86 (145)
81 COG3250 LacZ Beta-galactosidas 55.6 82 0.0018 37.0 10.6 76 225-324 332-410 (808)
82 COG4724 Endo-beta-N-acetylgluc 54.5 42 0.0009 35.4 7.1 96 48-146 436-539 (553)
83 PF12866 DUF3823: Protein of u 53.3 33 0.00071 33.6 6.0 49 497-546 58-110 (222)
84 PRK09936 hypothetical protein; 53.0 2.7E+02 0.0058 28.5 13.1 158 215-396 35-214 (296)
85 PRK09485 mmuM homocysteine met 47.0 1.8E+02 0.0039 29.8 10.7 75 371-456 140-218 (304)
86 PF13620 CarboxypepD_reg: Carb 46.8 21 0.00045 28.3 3.0 27 178-204 2-28 (82)
87 PF05547 Peptidase_M6: Immune 46.3 1.3E+02 0.0029 34.2 10.2 106 50-156 338-460 (645)
88 cd06547 GH85_ENGase Endo-beta- 46.2 40 0.00087 35.3 5.8 93 256-354 50-146 (339)
89 PF03198 Glyco_hydro_72: Gluca 44.7 3.8E+02 0.0081 27.7 13.3 230 222-490 60-310 (314)
90 PF03944 Endotoxin_C: delta en 44.7 2.3E+02 0.0051 25.4 11.5 37 121-157 104-142 (143)
91 PF02369 Big_1: Bacterial Ig-l 42.5 22 0.00048 30.0 2.7 23 175-197 24-46 (100)
92 smart00758 PA14 domain in bact 42.1 1.6E+02 0.0035 25.6 8.4 35 121-156 47-81 (136)
93 COG1453 Predicted oxidoreducta 41.8 4.5E+02 0.0098 27.8 14.3 107 339-463 132-254 (391)
94 COG5309 Exo-beta-1,3-glucanase 41.0 4E+02 0.0087 27.0 16.3 161 254-450 89-272 (305)
95 PHA01740 putative single-stran 38.8 1.1E+02 0.0024 27.3 6.3 57 33-90 39-106 (158)
96 PF03424 CBM_17_28: Carbohydra 38.3 1.1E+02 0.0024 29.3 6.7 42 28-69 40-90 (204)
97 TIGR03079 CH4_NH3mon_ox_B meth 37.7 50 0.0011 34.5 4.7 60 61-126 87-150 (399)
98 COG2040 MHT1 Homocysteine/sele 37.2 1.3E+02 0.0028 30.7 7.4 47 375-432 138-184 (300)
99 COG2373 Large extracellular al 37.0 3.3E+02 0.0072 34.8 12.4 127 73-209 404-558 (1621)
100 PF00775 Dioxygenase_C: Dioxyg 36.6 30 0.00064 32.9 2.8 24 177-200 31-54 (183)
101 PF13547 GTA_TIM: GTA TIM-barr 36.0 39 0.00083 34.2 3.5 30 420-449 206-265 (299)
102 KOG2566 Beta-glucocerebrosidas 35.2 5.8E+02 0.013 27.2 15.3 179 264-466 192-410 (518)
103 cd00152 PTX Pentraxins are pla 35.1 1.8E+02 0.0039 27.7 8.1 15 76-90 29-43 (201)
104 cd03459 3,4-PCD Protocatechuat 34.3 40 0.00086 31.2 3.1 25 177-201 17-41 (158)
105 cd00953 KDG_aldolase KDG (2-ke 32.8 5E+02 0.011 26.1 11.2 21 247-267 15-35 (279)
106 TIGR03066 Gem_osc_para_1 Gemma 32.1 1.7E+02 0.0037 25.4 6.4 70 95-191 36-106 (111)
107 PF13385 Laminin_G_3: Concanav 31.8 3.2E+02 0.0069 23.4 8.7 15 77-91 21-35 (157)
108 PF03746 LamB_YcsF: LamB/YcsF 31.4 2.9E+02 0.0063 27.4 8.8 91 252-354 42-142 (242)
109 cd03463 3,4-PCD_alpha Protocat 30.5 49 0.0011 31.5 3.1 25 177-201 38-62 (185)
110 PRK11354 kil FtsZ inhibitor pr 30.4 87 0.0019 24.7 3.8 53 111-191 13-69 (73)
111 PRK07534 methionine synthase I 30.3 2.8E+02 0.0061 28.9 9.1 86 334-430 85-179 (336)
112 PF13115 YtkA: YtkA-like 29.9 74 0.0016 25.6 3.8 25 177-202 23-47 (86)
113 PF02383 Syja_N: SacI homology 29.7 1.4E+02 0.0031 30.7 6.8 49 266-318 216-271 (319)
114 PRK10076 pyruvate formate lyas 29.5 3.9E+02 0.0084 25.9 9.3 102 333-449 53-156 (213)
115 PF01835 A2M_N: MG2 domain; I 29.1 3.2E+02 0.0069 22.3 10.7 67 73-140 10-85 (99)
116 COG3485 PcaH Protocatechuate 3 29.0 67 0.0014 31.6 3.8 24 177-200 74-97 (226)
117 cd00421 intradiol_dioxygenase 28.5 70 0.0015 29.0 3.7 26 177-202 13-38 (146)
118 PF07611 DUF1574: Protein of u 28.4 72 0.0016 33.4 4.2 62 251-320 251-312 (345)
119 TIGR02423 protocat_alph protoc 28.1 68 0.0015 30.7 3.7 25 177-201 41-65 (193)
120 cd03858 M14_CP_N-E_like Carbox 27.7 1.7E+02 0.0037 30.9 7.1 39 499-538 325-363 (374)
121 PF11141 DUF2914: Protein of u 25.7 63 0.0014 25.2 2.5 43 149-192 18-60 (66)
122 PRK05437 isopentenyl pyrophosp 25.7 6.8E+02 0.015 26.2 11.0 106 332-460 104-218 (352)
123 cd06245 M14_CPD_III The third 25.4 2E+02 0.0043 30.5 6.9 41 499-540 313-353 (363)
124 smart00159 PTX Pentraxin / C-r 24.9 3.4E+02 0.0073 26.0 8.0 16 76-91 29-44 (206)
125 COG1182 AcpD Acyl carrier prot 24.8 5.7E+02 0.012 24.7 9.2 109 294-431 19-128 (202)
126 cd03863 M14_CPD_II The second 24.4 1.9E+02 0.0041 30.7 6.6 42 498-540 324-365 (375)
127 PF04300 FBA: F-box associated 24.1 6.2E+02 0.013 23.9 14.5 119 20-140 11-159 (184)
128 PF09430 DUF2012: Protein of u 23.8 2.2E+02 0.0047 24.9 5.9 50 499-549 23-73 (123)
129 PF14701 hDGE_amylase: glucano 23.4 1.9E+02 0.0041 31.3 6.3 81 254-349 338-422 (423)
130 KOG2499 Beta-N-acetylhexosamin 23.4 1.4E+02 0.003 32.7 5.2 61 249-309 247-326 (542)
131 cd06810 PLPDE_III_ODC_DapDC_li 23.4 3.6E+02 0.0077 28.1 8.5 39 371-414 148-186 (368)
132 COG5520 O-Glycosyl hydrolase [ 21.7 1.9E+02 0.0041 30.4 5.6 56 255-317 156-216 (433)
133 PF13501 SoxY: Sulfur oxidatio 21.7 4.5E+02 0.0098 22.7 7.3 42 73-115 64-107 (111)
134 TIGR02439 catechol_proteo cate 21.7 83 0.0018 32.1 3.1 26 177-202 130-155 (285)
135 cd03460 1,2-CTD Catechol 1,2 d 21.2 86 0.0019 31.9 3.1 25 177-201 126-150 (282)
136 cd03464 3,4-PCD_beta Protocate 21.1 1.1E+02 0.0025 29.9 3.8 25 178-202 68-92 (220)
137 PRK12569 hypothetical protein; 20.6 5.9E+02 0.013 25.4 8.7 92 252-355 47-148 (245)
138 cd03458 Catechol_intradiol_dio 20.5 1.1E+02 0.0023 30.7 3.6 25 177-201 106-130 (256)
139 TIGR02422 protocat_beta protoc 20.4 1.2E+02 0.0026 29.6 3.8 24 178-201 63-86 (220)
140 cd06828 PLPDE_III_DapDC Type I 20.4 4.7E+02 0.01 27.2 8.7 41 371-415 152-192 (373)
141 TIGR02438 catachol_actin catec 20.4 92 0.002 31.7 3.1 25 177-201 134-158 (281)
No 1
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=100.00 E-value=5.8e-67 Score=538.14 Aligned_cols=278 Identities=36% Similarity=0.627 Sum_probs=245.6
Q ss_pred ecCCCceEEeecCCCCCCh-HHHHHHHccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeeecCC
Q 008838 200 IKSDFPFGCGMNNYILTST-EYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNS 278 (551)
Q Consensus 200 ~~~~F~fG~a~~~~~~~~~-~~~~~~~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~ 278 (551)
.++.|.||+|++...+.+. .|++++.++||.+|+||+|||..+||++|+|+|+.+|++++||+++||+||||+|+||+|
T Consensus 6 ~~~~f~~G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~~ 85 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLVWHSQ 85 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSS
T ss_pred HhccCCEEEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEEEccc
Confidence 6789999999998877654 899999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCccccCC---CHH---HHHHHHHHHHHHHHHhcC--CceEEEEeeccccccC---------ccccccchHHHHHHHH
Q 008838 279 KQQPSWVKKL---SPE---ELREAAAKRINSVTSRYA--GKLIAWDVVNENLHFR---------FFEDNLGENASAEFYR 341 (551)
Q Consensus 279 ~~~P~W~~~~---~~~---~~~~~~~~~i~~v~~rY~--g~i~~WDVvNE~~~~~---------~~~~~~g~d~~~~af~ 341 (551)
+|+|+... +++ .++++|++||+++++||+ |+|.+||||||+++.+ .|.+.+|++|++.||+
T Consensus 86 --~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~ 163 (320)
T PF00331_consen 86 --TPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFR 163 (320)
T ss_dssp --S-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHH
T ss_pred --ccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHH
Confidence 99999975 544 499999999999999999 7999999999999764 5899999999999999
Q ss_pred HHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHhhCCC
Q 008838 342 IAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGL 421 (551)
Q Consensus 342 ~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~~gl 421 (551)
+||+++|+++||||||++.. . .+...|+++|+.|++ +|+||||||+|+|+....+ +..+.+.|++|+++|+
T Consensus 164 ~A~~~~P~a~L~~NDy~~~~-~----~k~~~~~~lv~~l~~---~gvpIdgIG~Q~H~~~~~~-~~~i~~~l~~~~~~Gl 234 (320)
T PF00331_consen 164 AAREADPNAKLFYNDYNIES-P----AKRDAYLNLVKDLKA---RGVPIDGIGLQSHFDAGYP-PEQIWNALDRFASLGL 234 (320)
T ss_dssp HHHHHHTTSEEEEEESSTTS-T----HHHHHHHHHHHHHHH---TTHCS-EEEEEEEEETTSS-HHHHHHHHHHHHTTTS
T ss_pred HHHHhCCCcEEEeccccccc-h----HHHHHHHHHHHHHHh---CCCccceechhhccCCCCC-HHHHHHHHHHHHHcCC
Confidence 99999999999999999753 3 245789999999999 8999999999999988756 8899999999999999
Q ss_pred CEEEeeecCCCCc---------chHHHHHHHHHHHHcCC--CeeEEEEEecccCCCCC------ccccccCCCCCChhHH
Q 008838 422 PIWLTEVDVDIGP---------NQSQYLEEILREAYAHP--AVKGIISFSGPAIAGFK------VMPLADKDFKNTPAGD 484 (551)
Q Consensus 422 pI~iTEldv~~~~---------~QA~~~~~~~~~~~s~p--~v~gi~~Wg~~d~~g~~------~~~L~d~d~~pKPa~~ 484 (551)
||+||||||.... .||++|+++|++|++|| +|.||++|||+|..++. .++|||.|++|||||+
T Consensus 235 ~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa~~ 314 (320)
T PF00331_consen 235 PIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPAYD 314 (320)
T ss_dssp EEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HHHH
T ss_pred ceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHHHH
Confidence 9999999998743 79999999999999999 99999999999987643 3799999999999999
Q ss_pred HHHH
Q 008838 485 VVDK 488 (551)
Q Consensus 485 ~~~~ 488 (551)
++.+
T Consensus 315 ~~~~ 318 (320)
T PF00331_consen 315 AIVD 318 (320)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 2
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-62 Score=476.83 Aligned_cols=258 Identities=29% Similarity=0.489 Sum_probs=229.7
Q ss_pred HHHccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeeecCCCCCCccccC--CCHHHHHHHHHHH
Q 008838 223 WFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK--LSPEELREAAAKR 300 (551)
Q Consensus 223 ~~~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~--~~~~~~~~~~~~~ 300 (551)
...++||++|+||+|||+.++|++|.|||+.+|++++||++|||++|||+||||+| .|+|+.. ++++.+.++|++|
T Consensus 53 ~~~re~n~iTpenemKwe~i~p~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~q--~P~W~~~~e~~~~~~~~~~e~h 130 (345)
T COG3693 53 YYARECNQITPENEMKWEAIEPERGRFNFEAADAIANFARKHNMPLHGHTLVWHSQ--VPDWLFGDELSKEALAKMVEEH 130 (345)
T ss_pred HHHhhhcccccccccccccccCCCCccCccchHHHHHHHHHcCCeeccceeeeccc--CCchhhccccChHHHHHHHHHH
Confidence 44889999999999999999999999999999999999999999999999999998 9999998 6899999999999
Q ss_pred HHHHHHhcCCceEEEEeecccccc------Ccccc-ccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHH
Q 008838 301 INSVTSRYAGKLIAWDVVNENLHF------RFFED-NLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNY 373 (551)
Q Consensus 301 i~~v~~rY~g~i~~WDVvNE~~~~------~~~~~-~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~ 373 (551)
|.+|++||+|++.+||||||+++. +.|.+ ..|+|||+.||+.||++||+|+|+||||++ +... .++..+
T Consensus 131 I~tV~~rYkg~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~i-e~~~---~kr~~~ 206 (345)
T COG3693 131 IKTVVGRYKGSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSI-EGNP---AKRNYV 206 (345)
T ss_pred HHHHHHhccCceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccc-cCCh---HHHHHH
Confidence 999999999999999999999874 47887 779999999999999999999999999984 4333 245778
Q ss_pred HHHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHhhCCCCEEEeeecCCC--C---------cchHHHHHH
Q 008838 374 KKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDI--G---------PNQSQYLEE 442 (551)
Q Consensus 374 ~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~~glpI~iTEldv~~--~---------~~QA~~~~~ 442 (551)
+++|++|++ +|+||||||+|+|+....|++...+..|.+++.+|+||+||||||+. + ..|+. ...
T Consensus 207 ~nlI~~Lke---kG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~-~~~ 282 (345)
T COG3693 207 LNLIEELKE---KGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLGLPIYVTELDMSDYTPDSGAPRLYLQKAAS-RAK 282 (345)
T ss_pred HHHHHHHHH---CCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcCCCceEEEeeeeccCCCCccHHHHHHHHHH-HHH
Confidence 889999999 89999999999999998899999999999999999999999999987 2 12333 456
Q ss_pred HHHHHHcCCC-eeEEEEEecccCCCC----------CccccccCCCCCChhHHHHHHHH
Q 008838 443 ILREAYAHPA-VKGIISFSGPAIAGF----------KVMPLADKDFKNTPAGDVVDKLL 490 (551)
Q Consensus 443 ~~~~~~s~p~-v~gi~~Wg~~d~~g~----------~~~~L~d~d~~pKPa~~~~~~l~ 490 (551)
.+.++...|+ |++|++||+.|...| ..+.|||.+++|||+|.++.+.+
T Consensus 283 ~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~n~~pKPa~~aI~e~l 341 (345)
T COG3693 283 AFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDDNYQPKPAYKAIAEVL 341 (345)
T ss_pred HHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCcccCCCCCcchHHHHHHHHh
Confidence 6677777777 999999999876421 24899999999999999998654
No 3
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=100.00 E-value=4.8e-57 Score=451.30 Aligned_cols=241 Identities=37% Similarity=0.590 Sum_probs=222.0
Q ss_pred CCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeeecCCCCCCccccCCCHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 008838 237 MKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWD 316 (551)
Q Consensus 237 ~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~rY~g~i~~WD 316 (551)
|||..+||++|+|||+.+|++++||+++||+||||+|+||.| .|+|+..++++++++++.+||+++++||+|+|..||
T Consensus 1 ~kW~~~ep~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~~--~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wd 78 (254)
T smart00633 1 MKWDSTEPSRGQFNFSGADAIVNFAKENGIKVRGHTLVWHSQ--TPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWD 78 (254)
T ss_pred CCcccccCCCCccChHHHHHHHHHHHHCCCEEEEEEEeeccc--CCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 799999999999999999999999999999999999999986 899999888999999999999999999999999999
Q ss_pred eeccccccC-------ccccccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCc
Q 008838 317 VVNENLHFR-------FFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGM 389 (551)
Q Consensus 317 VvNE~~~~~-------~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~ 389 (551)
|||||++.+ .|.+.+|++|+..+|++||+++|+++|++|||++.. +.. +...|+++++.|++ +|++
T Consensus 79 V~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~-~~~---k~~~~~~~v~~l~~---~g~~ 151 (254)
T smart00633 79 VVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEE-PNA---KRQAIYELVKKLKA---KGVP 151 (254)
T ss_pred EeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcC-ccH---HHHHHHHHHHHHHH---CCCc
Confidence 999998754 788999999999999999999999999999999653 322 34688999999999 8999
Q ss_pred ccEEEecccCCCCCCCHHHHHHHHHHHhhCCCCEEEeeecCCCC---cchHHHHHHHHHHHHcCCCeeEEEEEecccCCC
Q 008838 390 SLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIG---PNQSQYLEEILREAYAHPAVKGIISFSGPAIAG 466 (551)
Q Consensus 390 iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~~glpI~iTEldv~~~---~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~g 466 (551)
|||||+|+|+....|++..+++.|++|+++|+||+|||+|++.. +.||++++++|+++++||+|.||++||++|..+
T Consensus 152 iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d~~~ 231 (254)
T smart00633 152 IDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVTDKYS 231 (254)
T ss_pred cceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCccCCc
Confidence 99999999998666788999999999999999999999999874 479999999999999999999999999999866
Q ss_pred CC---ccccccCCCCCChhHHHH
Q 008838 467 FK---VMPLADKDFKNTPAGDVV 486 (551)
Q Consensus 467 ~~---~~~L~d~d~~pKPa~~~~ 486 (551)
+. +++|||.|++|||||.++
T Consensus 232 W~~~~~~~L~d~~~~~kpa~~~~ 254 (254)
T smart00633 232 WLDGGAPLLFDANYQPKPAYWAV 254 (254)
T ss_pred ccCCCCceeECCCCCCChhhhcC
Confidence 42 579999999999999864
No 4
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=99.69 E-value=1.1e-15 Score=136.26 Aligned_cols=119 Identities=28% Similarity=0.492 Sum_probs=97.3
Q ss_pred CceeeCCCcCC-CCCCeeeeccee--EEEeeccCCceeEEEeeCCCCCCcceeee--eccCCCEEEEEEEEEEcCCCceE
Q 008838 21 GGLIVNPEFNR-GTEGWTAFGQAA--IREATSEEGNKYIVAHSRTNPLDSFSQKV--QLEKGKLYSFSAWIQVSRGSDTV 95 (551)
Q Consensus 21 ~~li~n~~FE~-g~~gW~~~g~~~--~~~~~~~~G~~~l~vt~Rt~~w~G~~~~v--~l~~G~~Y~~SawVk~~~gs~~~ 95 (551)
.|||.|++||+ ++.+|...++.. ..+... +|.++|+|.+|+..|+++.+.+ .|++|++|+||+|||...+ ..+
T Consensus 1 ~nli~N~~Fe~~~~~~W~~~~~~~~~~~~~~~-~g~~~l~v~~~~~~~~~~~~~~~~~l~~G~~Y~~s~~vk~~~~-~~~ 78 (131)
T PF02018_consen 1 GNLIKNGGFEDGGLSGWSFWGNSGASASVDNA-SGNYSLKVSNRSATWDGQSQQQTISLKPGKTYTVSFWVKADSG-GTV 78 (131)
T ss_dssp GBSSSSTTSTTTSTTTEEEESSTTEEEEEEEC-SSSEEEEEECCSSGCGEEEEEEEEEE-TTSEEEEEEEEEESSS-EEE
T ss_pred CCEEECCCccCCCCCCCEEccCCCEEEEEEcC-CCeEEEEEECCCCCccccceecceEecCCCEEEEEEEEEeCCC-CEE
Confidence 48999999999 699999998763 333333 9999999999999999998766 9999999999999999987 667
Q ss_pred EEEEEeCCC-eeEEcee-EEEeCCCeEEEEeEEEeCCC-CcEEEEEEeC
Q 008838 96 AAVFKTSDG-KLIDAGK-VLAKHGCWSLLKGGLAANFT-SLVEILFESK 141 (551)
Q Consensus 96 ~~~l~~~~g-~~~~~~~-~~~~~~~Wt~l~g~~t~~~~-~~~~iy~e~~ 141 (551)
.+.+...++ .+..... ....+++|++++++||++.+ ..+.|||+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~~ 127 (131)
T PF02018_consen 79 SVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEIG 127 (131)
T ss_dssp EEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEES
T ss_pred EEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEec
Confidence 888877665 5543332 66678999999999999965 6899999974
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.59 E-value=2.4e-13 Score=139.36 Aligned_cols=248 Identities=17% Similarity=0.204 Sum_probs=166.8
Q ss_pred HHHHH-ccCceeeeCCCCCCccccccC-CccchhhhHHHHHHHHHCCceEEE--eE-eeecCC--CCCC-ccccCCCHHH
Q 008838 221 QNWFA-SRFKYTTFTNQMKWYSTEKIQ-GEENYTIADAMLQFCEKNGISVRG--HN-IFWDNS--KQQP-SWVKKLSPEE 292 (551)
Q Consensus 221 ~~~~~-~~Fn~~t~eN~~kW~~~Ep~~-G~~~~~~~D~~v~~a~~~gi~vrG--H~-LvW~~~--~~~P-~W~~~~~~~~ 292 (551)
.++++ .++|+|+++ + | ..|.. |..+.+.+-++.+-|++.||+|.- |. =.|..+ +..| .|.. ++.++
T Consensus 30 ~~ilk~~G~N~vRlR--v-w--v~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~-~~~~~ 103 (332)
T PF07745_consen 30 FQILKDHGVNAVRLR--V-W--VNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWAN-LSFDQ 103 (332)
T ss_dssp HHHHHHTT--EEEEE--E----SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTS-SSHHH
T ss_pred HHHHHhcCCCeEEEE--e-c--cCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCC-CCHHH
Confidence 34554 689999995 2 5 66777 999999999999999999999852 21 013322 1233 3443 48899
Q ss_pred HHHHHHHHHHHHHHhcCC---ceEEEEeeccccccCccccccch------HHHHHHHHHHhccCCCceEEEecCCccccc
Q 008838 293 LREAAAKRINSVTSRYAG---KLIAWDVVNENLHFRFFEDNLGE------NASAEFYRIAHQLDPNTIMFLNEYNTIELA 363 (551)
Q Consensus 293 ~~~~~~~~i~~v~~rY~g---~i~~WDVvNE~~~~~~~~~~~g~------d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~ 363 (551)
|.+++.+|.+.+++.++. .+..+.|-||...+-.|..--.. .++..+++++|+.+|++++.+.- +.+
T Consensus 104 l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~----~~~ 179 (332)
T PF07745_consen 104 LAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHL----ANG 179 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEE----S-T
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEE----CCC
Confidence 999999999999988763 68899999998766556321111 35678999999999999999963 223
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHh-hCCCCEEEeeecCCCC---------
Q 008838 364 ADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILG-STGLPIWLTEVDVDIG--------- 433 (551)
Q Consensus 364 ~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a-~~glpI~iTEldv~~~--------- 433 (551)
.+. ..+......|++ .|+.+|.||+..+..-. ..+..++..|+.++ ++|+||.|+|.+.+..
T Consensus 180 ~~~----~~~~~~f~~l~~---~g~d~DviGlSyYP~w~-~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n 251 (332)
T PF07745_consen 180 GDN----DLYRWFFDNLKA---AGVDFDVIGLSYYPFWH-GTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGN 251 (332)
T ss_dssp TSH----HHHHHHHHHHHH---TTGG-SEEEEEE-STTS-T-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--
T ss_pred Cch----HHHHHHHHHHHh---cCCCcceEEEecCCCCc-chHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccc
Confidence 221 233333444555 68899999997665332 36788999999986 5899999999986541
Q ss_pred ---------------cchHHHHHHHHHHHHcCC--CeeEEEEEec-ccC--------C--CCCccccccCCCCCChhHHH
Q 008838 434 ---------------PNQSQYLEEILREAYAHP--AVKGIISFSG-PAI--------A--GFKVMPLADKDFKNTPAGDV 485 (551)
Q Consensus 434 ---------------~~QA~~~~~~~~~~~s~p--~v~gi~~Wg~-~d~--------~--g~~~~~L~d~d~~pKPa~~~ 485 (551)
+.|++++++++..+.++| ...||++|.. |-+ . .+.+.+|||.+.++.|+..+
T Consensus 252 ~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~~lFD~~g~~l~sl~~ 331 (332)
T PF07745_consen 252 IIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWIPVENGWDWGGGSSWDNQALFDFNGNALPSLDV 331 (332)
T ss_dssp SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBGSSB-TTSBB-GGGGH
T ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccccCCcccccCCCCCccccccCCCCCCCchHhhc
Confidence 369999999999999986 6899999985 211 1 25688999999999999876
Q ss_pred H
Q 008838 486 V 486 (551)
Q Consensus 486 ~ 486 (551)
+
T Consensus 332 f 332 (332)
T PF07745_consen 332 F 332 (332)
T ss_dssp H
T ss_pred C
Confidence 4
No 6
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.46 E-value=6.6e-12 Score=126.77 Aligned_cols=233 Identities=15% Similarity=0.187 Sum_probs=149.7
Q ss_pred eEEeecCC--CCCChHHHHHHHccCceeeeCCCCCCcccc-ccCCc----cchhhhHHHHHHHHHCCceEEEeEeeecCC
Q 008838 206 FGCGMNNY--ILTSTEYQNWFASRFKYTTFTNQMKWYSTE-KIQGE----ENYTIADAMLQFCEKNGISVRGHNIFWDNS 278 (551)
Q Consensus 206 fG~a~~~~--~~~~~~~~~~~~~~Fn~~t~eN~~kW~~~E-p~~G~----~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~ 278 (551)
+|...+.. ...+..+..+-..+||.|++ .+.|..++ |.++. -.+...|++|++|+++||.| .|.+|.
T Consensus 11 ~G~n~~w~~~~~~~~~~~~~~~~G~n~VRi--~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v---ild~h~- 84 (281)
T PF00150_consen 11 RGFNTHWYNPSITEADFDQLKALGFNTVRI--PVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV---ILDLHN- 84 (281)
T ss_dssp EEEEETTSGGGSHHHHHHHHHHTTESEEEE--EEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE---EEEEEE-
T ss_pred eeeecccCCCCCHHHHHHHHHHCCCCEEEe--CCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE---EEEecc-
Confidence 56666522 12223344444579999999 78897666 55553 24566899999999999999 355664
Q ss_pred CCCCccccCC----CHHHHHHHHHHHHHHHHHhcCC--ceEEEEeeccccccCc---cccccc---hHHHHHHHHHHhcc
Q 008838 279 KQQPSWVKKL----SPEELREAAAKRINSVTSRYAG--KLIAWDVVNENLHFRF---FEDNLG---ENASAEFYRIAHQL 346 (551)
Q Consensus 279 ~~~P~W~~~~----~~~~~~~~~~~~i~~v~~rY~g--~i~~WDVvNE~~~~~~---~~~~~g---~d~~~~af~~Ar~~ 346 (551)
.|.|.... ......+.+.++++.+++||++ .|..||++|||..... |..... .+++..++..+|++
T Consensus 85 --~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~ 162 (281)
T PF00150_consen 85 --APGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAA 162 (281)
T ss_dssp --STTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHT
T ss_pred --CccccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhc
Confidence 47885432 3445677788899999999965 6889999999986532 411111 24678899999999
Q ss_pred CCCceEEEecCCccccchhhhhhHHH-HHHHHHHHhcCCCCCCcccEEEecccCCCCC--C-C----------HHHHHHH
Q 008838 347 DPNTIMFLNEYNTIELAADKESNAVN-YKKKIDEILSYPGNAGMSLGIGLQGHFSSDQ--P-D----------IAYMRSV 412 (551)
Q Consensus 347 dP~a~L~~Ndy~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~--p-~----------~~~i~~~ 412 (551)
+|+..+++.+.+ .... ... ..+ .|......+.+.+|.+..... . . ...+...
T Consensus 163 ~~~~~i~~~~~~-~~~~------~~~~~~~-------~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
T PF00150_consen 163 DPNHLIIVGGGG-WGAD------PDGAAAD-------NPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAA 228 (281)
T ss_dssp TSSSEEEEEEHH-HHTB------HHHHHHH-------STTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHH
T ss_pred CCcceeecCCCc-cccc------cchhhhc-------CcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHH
Confidence 999999997732 1111 011 111 121223457777765543221 0 0 1234555
Q ss_pred HHHHhhCCCCEEEeeecCCCCc--chHHHHHHHHHHHHcCCCeeEEEEEecc
Q 008838 413 LDILGSTGLPIWLTEVDVDIGP--NQSQYLEEILREAYAHPAVKGIISFSGP 462 (551)
Q Consensus 413 L~~~a~~glpI~iTEldv~~~~--~QA~~~~~~~~~~~s~p~v~gi~~Wg~~ 462 (551)
+..+.+.|+||+++|+++.... ...++...++..+.++ .+ |.++|.+.
T Consensus 229 ~~~~~~~g~pv~~gE~G~~~~~~~~~~~~~~~~~~~~~~~-~~-g~~~W~~~ 278 (281)
T PF00150_consen 229 LNWAKKNGKPVVVGEFGWSNNDGNGSTDYADAWLDYLEQN-GI-GWIYWSWK 278 (281)
T ss_dssp HHHHHHTTSEEEEEEEESSTTTSCHHHHHHHHHHHHHHHT-TC-EEEECEES
T ss_pred HHHHHHcCCeEEEeCcCCcCCCCCcCHHHHHHHHHHHHHC-CC-eEEEEecC
Confidence 6666778999999999997532 2455666667777776 44 67789875
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.35 E-value=3.9e-11 Score=126.92 Aligned_cols=248 Identities=21% Similarity=0.227 Sum_probs=142.0
Q ss_pred HHHccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC--------------
Q 008838 223 WFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL-------------- 288 (551)
Q Consensus 223 ~~~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~-------------- 288 (551)
+-..+||.|++. .+.|..+||++|+|+|+..|++|+.|.++||+|- |.... ...|.|+...
T Consensus 19 m~~~G~n~vri~-~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~vi---L~~~~-~~~P~Wl~~~~Pe~~~~~~~g~~~ 93 (374)
T PF02449_consen 19 MKEAGFNTVRIG-EFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVI---LGTPT-AAPPAWLYDKYPEILPVDADGRRR 93 (374)
T ss_dssp HHHHT-SEEEE--CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEE---EEECT-TTS-HHHHCCSGCCC-B-TTTSBE
T ss_pred HHHcCCCEEEEE-EechhhccCCCCeeecHHHHHHHHHHHhccCeEE---EEecc-cccccchhhhcccccccCCCCCcC
Confidence 335699999973 6899999999999999999999999999999984 33322 3478998531
Q ss_pred ----------CHHHHHHHHHHHHHHHHHhcCC--ceEEEEeeccccc-c------------------------------C
Q 008838 289 ----------SPEELREAAAKRINSVTSRYAG--KLIAWDVVNENLH-F------------------------------R 325 (551)
Q Consensus 289 ----------~~~~~~~~~~~~i~~v~~rY~g--~i~~WDVvNE~~~-~------------------------------~ 325 (551)
+.+..++.+.+.+++++.||++ .|..|+|.||+.. . .
T Consensus 94 ~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~ 173 (374)
T PF02449_consen 94 GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEALNRAWGTA 173 (374)
T ss_dssp ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHHHHHHTTT
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHHHHHHcCC
Confidence 1245788999999999999997 4999999999742 0 1
Q ss_pred c-------cccccc---------h---------------HHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHH
Q 008838 326 F-------FEDNLG---------E---------------NASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYK 374 (551)
Q Consensus 326 ~-------~~~~~g---------~---------------d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~ 374 (551)
+ |.++.. + +++....+.+|+++|+..+..|-+...-.. .++.
T Consensus 174 ~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~~-------~d~~ 246 (374)
T PF02449_consen 174 FWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFNG-------IDYF 246 (374)
T ss_dssp GGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT---S-------S-HH
T ss_pred cccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccCc-------CCHH
Confidence 1 222210 0 122345678889999998888865420001 2333
Q ss_pred HHHHHHhcCCCCCCcccEEEecccCC---CCC-CCHHHHHHHHHHHh--hCCCCEEEeeecCCCC-------cchHHHHH
Q 008838 375 KKIDEILSYPGNAGMSLGIGLQGHFS---SDQ-PDIAYMRSVLDILG--STGLPIWLTEVDVDIG-------PNQSQYLE 441 (551)
Q Consensus 375 ~~l~~l~~~~~~g~~iDgIG~Q~H~~---~~~-p~~~~i~~~L~~~a--~~glpI~iTEldv~~~-------~~QA~~~~ 441 (551)
+. ...+|.+|.-.+.. ... .....+.-..+... ..|.|.+++|.-.... ......++
T Consensus 247 ~~----------a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~ 316 (374)
T PF02449_consen 247 KW----------AKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGELR 316 (374)
T ss_dssp HH----------GGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTHHH
T ss_pred HH----------HhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHHH
Confidence 32 12457777765544 110 11122222333332 5799999999854421 11123445
Q ss_pred HHHHHHHcCCCeeEEEEEecccCC-C-C-CccccccCCC-CCChhHHHHHHHHHHh
Q 008838 442 EILREAYAHPAVKGIISFSGPAIA-G-F-KVMPLADKDF-KNTPAGDVVDKLLAEW 493 (551)
Q Consensus 442 ~~~~~~~s~p~v~gi~~Wg~~d~~-g-~-~~~~L~d~d~-~pKPa~~~~~~l~~~w 493 (551)
...-.+++| +.++|.+|...... | + ...||++.|. ++.+.|..+.++-++.
T Consensus 317 ~~~~~~~A~-Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 317 LWSWQAIAH-GADGILFWQWRQSRFGAEQFHGGLVDHDGREPTRRYREVAQLGREL 371 (374)
T ss_dssp HHHHHHHHT-T-S-EEEC-SB--SSSTTTTS--SB-TTS--B-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCeeEeeeccCCCCCchhhhcccCCccCCCCCcHHHHHHHHHHHH
Confidence 555566777 89999999876433 3 2 3789999999 9899999998887654
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=99.31 E-value=2.2e-10 Score=122.80 Aligned_cols=248 Identities=17% Similarity=0.127 Sum_probs=156.7
Q ss_pred HccCceeeeCCCCCCcccccc-CCccch---hhhHHHHHHHHHCCceEEEeEeeecCCCCCCccccC---CCHHHHHHHH
Q 008838 225 ASRFKYTTFTNQMKWYSTEKI-QGEENY---TIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK---LSPEELREAA 297 (551)
Q Consensus 225 ~~~Fn~~t~eN~~kW~~~Ep~-~G~~~~---~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~---~~~~~~~~~~ 297 (551)
.-+||..++ .+.|..++|. +|.+|. +..|++++.|+++||++.- +| .|-. .|.|+.. ...++..+.+
T Consensus 65 ~~G~~~~R~--si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~piv-tL-~Hfd--~P~~l~~~gGw~~~~~~~~f 138 (427)
T TIGR03356 65 ELGVDAYRF--SIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFV-TL-YHWD--LPQALEDRGGWLNRDTAEWF 138 (427)
T ss_pred HcCCCeEEc--ccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEE-ee-ccCC--ccHHHHhcCCCCChHHHHHH
Confidence 458999999 7999999999 788874 5578999999999999852 33 3432 7988763 1234567889
Q ss_pred HHHHHHHHHhcCCceEEEEeeccccccCc-------cccc-cc-h-HH---------HHHHHHHHhccCCCceEEEe-cC
Q 008838 298 AKRINSVTSRYAGKLIAWDVVNENLHFRF-------FEDN-LG-E-NA---------SAEFYRIAHQLDPNTIMFLN-EY 357 (551)
Q Consensus 298 ~~~i~~v~~rY~g~i~~WDVvNE~~~~~~-------~~~~-~g-~-d~---------~~~af~~Ar~~dP~a~L~~N-dy 357 (551)
.+|.+.+++||+++|..|..+|||+.... +... .. . -| -+.|+++.|+..|++++-+. ..
T Consensus 139 ~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~ 218 (427)
T TIGR03356 139 AEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNL 218 (427)
T ss_pred HHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99999999999999999999999974321 1100 00 1 11 15688899999998887552 22
Q ss_pred Ccccc----chhhhh--hHHHHH-----HH---------HHH-HhcCCC--------CCCcccEEEecccCCCC------
Q 008838 358 NTIEL----AADKES--NAVNYK-----KK---------IDE-ILSYPG--------NAGMSLGIGLQGHFSSD------ 402 (551)
Q Consensus 358 ~~~~~----~~~~~~--~~~~~~-----~~---------l~~-l~~~~~--------~g~~iDgIG~Q~H~~~~------ 402 (551)
..... +.+..+ ....+. +. +++ +...+. -.+.+|=||++.+....
T Consensus 219 ~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~ 298 (427)
T TIGR03356 219 TPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPG 298 (427)
T ss_pred CeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCC
Confidence 11111 111100 000110 00 000 100000 02356889987543210
Q ss_pred --------C---C--------CHHHHHHHHHHHh-hCCC-CEEEeeecCCC----------CcchHHHHHHHHHHHHc--
Q 008838 403 --------Q---P--------DIAYMRSVLDILG-STGL-PIWLTEVDVDI----------GPNQSQYLEEILREAYA-- 449 (551)
Q Consensus 403 --------~---p--------~~~~i~~~L~~~a-~~gl-pI~iTEldv~~----------~~~QA~~~~~~~~~~~s-- 449 (551)
. + .|..|+..|..+. ..++ ||.|||-++.. ...+.+|+++.+..+..
T Consensus 299 ~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai 378 (427)
T TIGR03356 299 TGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAI 378 (427)
T ss_pred CCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 0 1 2467899998875 5786 79999998863 22456677776655543
Q ss_pred --CCCeeEEEEEecccCC----C-CCccccccCCCC
Q 008838 450 --HPAVKGIISFSGPAIA----G-FKVMPLADKDFK 478 (551)
Q Consensus 450 --~p~v~gi~~Wg~~d~~----g-~~~~~L~d~d~~ 478 (551)
-=.|.|.+.|++.|.- | ...+||+--|+.
T Consensus 379 ~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~ 414 (427)
T TIGR03356 379 EEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYE 414 (427)
T ss_pred HCCCCEEEEEecccccccchhcccccccceEEECCC
Confidence 3358999999998752 2 246888876654
No 9
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.29 E-value=2.7e-10 Score=124.46 Aligned_cols=244 Identities=17% Similarity=0.162 Sum_probs=128.0
Q ss_pred cCceeeeCCCC--CCccccc--cCC--ccchhhhHHHHHHHHHCCceEEEeEeeecCCCCCCccccC-----------CC
Q 008838 227 RFKYTTFTNQM--KWYSTEK--IQG--EENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK-----------LS 289 (551)
Q Consensus 227 ~Fn~~t~eN~~--kW~~~Ep--~~G--~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~-----------~~ 289 (551)
+|..|++.|-| ....... ..| .|||+..|+++++..++||++.-. |- ..|.++.. .+
T Consensus 53 gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~ve-l~-----f~p~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 53 GFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVE-LG-----FMPMALASGYQTVFWYKGNIS 126 (486)
T ss_dssp --SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEE-E------SB-GGGBSS--EETTTTEE-S
T ss_pred CceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEE-EE-----echhhhcCCCCccccccCCcC
Confidence 79999998877 4443322 233 299999999999999999998422 21 24544432 13
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-----ceE--EEEeeccccccCccccccchHH---HHHHHHHHhccCCCceEEEecCCc
Q 008838 290 PEELREAAAKRINSVTSRYAG-----KLI--AWDVVNENLHFRFFEDNLGENA---SAEFYRIAHQLDPNTIMFLNEYNT 359 (551)
Q Consensus 290 ~~~~~~~~~~~i~~v~~rY~g-----~i~--~WDVvNE~~~~~~~~~~~g~d~---~~~af~~Ar~~dP~a~L~~Ndy~~ 359 (551)
|+...+.|.+.|+++++||.+ .|. .|+|||||....+|....-.+| .+.+++++|+++|++++---.+..
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp~~~~ 206 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGPAFAW 206 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEEEEET
T ss_pred CcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCccccc
Confidence 334455566666555555443 244 6799999988776643322345 467899999999999974321110
Q ss_pred cccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCC---CC--------CHHH----HHHHHHHHhh---CCC
Q 008838 360 IELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSD---QP--------DIAY----MRSVLDILGS---TGL 421 (551)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~---~p--------~~~~----i~~~L~~~a~---~gl 421 (551)
. .......|++.+ +. ++.|+|-|.+|...... .. .... ++...+.+.+ .++
T Consensus 207 ---~--~~~~~~~~l~~~---~~---~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 275 (486)
T PF01229_consen 207 ---A--YDEWCEDFLEFC---KG---NNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKETRPIINDEADPNL 275 (486)
T ss_dssp ---T---THHHHHHHHHH---HH---CT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT-
T ss_pred ---c--HHHHHHHHHHHH---hc---CCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCC
Confidence 0 011234454443 34 67889999997543211 01 1111 2222222332 357
Q ss_pred CEEEeeecCCCC--------cchHHHHHHH-HHHHHcCCCeeEEEEEecccCC---C------CCccccccCCCCCChhH
Q 008838 422 PIWLTEVDVDIG--------PNQSQYLEEI-LREAYAHPAVKGIISFSGPAIA---G------FKVMPLADKDFKNTPAG 483 (551)
Q Consensus 422 pI~iTEldv~~~--------~~QA~~~~~~-~~~~~s~p~v~gi~~Wg~~d~~---g------~~~~~L~d~d~~pKPa~ 483 (551)
|+++||...+.. ..+|.++.+. +... .-.+.++.+|.+.|-- + ...+||+..+.-+||+|
T Consensus 276 ~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~--~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~KPa~ 353 (486)
T PF01229_consen 276 PLYITEWNASISPRNPQHDTCFKAAYIAKNLLSND--GAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPKPAY 353 (486)
T ss_dssp -EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHG--GGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-HHH
T ss_pred ceeecccccccCCCcchhccccchhhHHHHHHHhh--hhhhhhhhccchhhhhhccCCCCCceecchhhhhccCCCchHH
Confidence 899999886653 2345555442 2221 1248899999997531 1 13589999999999999
Q ss_pred HHHHHH
Q 008838 484 DVVDKL 489 (551)
Q Consensus 484 ~~~~~l 489 (551)
.++.-|
T Consensus 354 ~A~~~L 359 (486)
T PF01229_consen 354 YAFQLL 359 (486)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987544
No 10
>PLN02998 beta-glucosidase
Probab=99.14 E-value=7.4e-09 Score=112.58 Aligned_cols=263 Identities=15% Similarity=0.187 Sum_probs=162.3
Q ss_pred HHHc-cCceeeeCCCCCCcccccc-CCccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC----CHHHH
Q 008838 223 WFAS-RFKYTTFTNQMKWYSTEKI-QGEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL----SPEEL 293 (551)
Q Consensus 223 ~~~~-~Fn~~t~eN~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~----~~~~~ 293 (551)
++++ ++|+-++ .+.|..++|. .|.+|-+. .+++++-+.++||++-- || +|=. +|.|+... -..+.
T Consensus 90 lmk~lG~~~YRf--SIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~V-TL-~H~d--lP~~L~~~yGGW~n~~~ 163 (497)
T PLN02998 90 LMADMGLEAYRF--SISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHV-TL-HHFD--LPQALEDEYGGWLSQEI 163 (497)
T ss_pred HHHHcCCCeEEe--eccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEE-Ee-cCCC--CCHHHHHhhCCcCCchH
Confidence 4443 7999999 7999999996 56666554 47999999999998852 33 4433 89998642 33467
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeeccccccC-------cccccc-----------ch----HH---------HHHHHHH
Q 008838 294 REAAAKRINSVTSRYAGKLIAWDVVNENLHFR-------FFEDNL-----------GE----NA---------SAEFYRI 342 (551)
Q Consensus 294 ~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~-------~~~~~~-----------g~----d~---------~~~af~~ 342 (551)
.+.+.+|++.+++||++||..|=..|||.... .+.... |. -| -+.|+++
T Consensus 164 v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~ 243 (497)
T PLN02998 164 VRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATIL 243 (497)
T ss_pred HHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999997421 111000 00 11 1457777
Q ss_pred Hhcc---CCCceE--EEecCCcccc----chhhhhh--HHHHH-----HH---------HHH-Hhc-CC----C----CC
Q 008838 343 AHQL---DPNTIM--FLNEYNTIEL----AADKESN--AVNYK-----KK---------IDE-ILS-YP----G----NA 387 (551)
Q Consensus 343 Ar~~---dP~a~L--~~Ndy~~~~~----~~~~~~~--~~~~~-----~~---------l~~-l~~-~~----~----~g 387 (551)
.|+. .|+.++ .+|.. .... +.+..+. ...|. +- +++ +.. .+ + -+
T Consensus 244 ~~~~~~~~~~g~IGi~~~~~-~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~ 322 (497)
T PLN02998 244 YKQQYKYKQHGSVGISVYTY-GAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVK 322 (497)
T ss_pred HHHhhccCCCCcEEEEEeCC-eeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhc
Confidence 7775 565444 33431 1111 1111100 00010 00 010 100 00 0 02
Q ss_pred CcccEEEecccCCC-------C-------------------------C---CCHHHHHHHHHHHh-hCCC-CEEEeeecC
Q 008838 388 GMSLGIGLQGHFSS-------D-------------------------Q---PDIAYMRSVLDILG-STGL-PIWLTEVDV 430 (551)
Q Consensus 388 ~~iDgIG~Q~H~~~-------~-------------------------~---p~~~~i~~~L~~~a-~~gl-pI~iTEldv 430 (551)
+.+|=||++-+... . . -.|..|+..|..+. ..++ ||.|||-++
T Consensus 323 ~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~ 402 (497)
T PLN02998 323 GAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQ 402 (497)
T ss_pred CCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 34688887622110 0 0 02456888888875 5777 699999998
Q ss_pred CCC-------cchHHHHHHHHHHHH----cCCCeeEEEEEecccCC----C-CCccccccCCCC-------CChhHHHHH
Q 008838 431 DIG-------PNQSQYLEEILREAY----AHPAVKGIISFSGPAIA----G-FKVMPLADKDFK-------NTPAGDVVD 487 (551)
Q Consensus 431 ~~~-------~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~----g-~~~~~L~d~d~~-------pKPa~~~~~ 487 (551)
... ...-+|+++.+..+. .--.|.|.+.|++.|.- | ...+||+--|+. ||+++..++
T Consensus 403 ~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~ 482 (497)
T PLN02998 403 MTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYS 482 (497)
T ss_pred ccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHH
Confidence 642 234556666555443 23468999999998752 3 246888866664 899999999
Q ss_pred HHHHH
Q 008838 488 KLLAE 492 (551)
Q Consensus 488 ~l~~~ 492 (551)
++|+.
T Consensus 483 ~ii~~ 487 (497)
T PLN02998 483 SFLKG 487 (497)
T ss_pred HHHhc
Confidence 99964
No 11
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.11 E-value=1.9e-08 Score=109.20 Aligned_cols=262 Identities=15% Similarity=0.083 Sum_probs=163.2
Q ss_pred HHHH-ccCceeeeCCCCCCcccccc-CCccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC---CHHHH
Q 008838 222 NWFA-SRFKYTTFTNQMKWYSTEKI-QGEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL---SPEEL 293 (551)
Q Consensus 222 ~~~~-~~Fn~~t~eN~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~---~~~~~ 293 (551)
++++ -++|+-++ .+.|..++|. .|.+|-.. .+++++.|.++||+.. +-++|=. +|.|+... ...+.
T Consensus 61 ~L~~~lG~~~yRf--SIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~--VTL~H~d--lP~~L~~~GGW~n~~~ 134 (469)
T PRK13511 61 KLAEEFGVNGIRI--SIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPF--VTLHHFD--TPEALHSNGDWLNREN 134 (469)
T ss_pred HHHHHhCCCEEEe--eccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEE--EEecCCC--CcHHHHHcCCCCCHHH
Confidence 3444 37999999 7999999997 45555544 4799999999999884 3334543 89999653 33467
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeeccccccC-------ccccc-cch--H-H---------HHHHHHHHhccCCCceEE
Q 008838 294 REAAAKRINSVTSRYAGKLIAWDVVNENLHFR-------FFEDN-LGE--N-A---------SAEFYRIAHQLDPNTIMF 353 (551)
Q Consensus 294 ~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~-------~~~~~-~g~--d-~---------~~~af~~Ar~~dP~a~L~ 353 (551)
.+.+.+|.+.+++||++ |..|=-+|||.... .+..- .+. . | -+.|+++.|+..|+.++-
T Consensus 135 v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IG 213 (469)
T PRK13511 135 IDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIG 213 (469)
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 78899999999999999 99999999997422 11110 010 1 1 146788888888876653
Q ss_pred E-ecCCcccc-----chhhhhh-H-HHH------------------HHHHH-----------------HHhcCCCCCCcc
Q 008838 354 L-NEYNTIEL-----AADKESN-A-VNY------------------KKKID-----------------EILSYPGNAGMS 390 (551)
Q Consensus 354 ~-Ndy~~~~~-----~~~~~~~-~-~~~------------------~~~l~-----------------~l~~~~~~g~~i 390 (551)
+ ..+..... +.+..+. . ..| .+.+. ++.. +..+++
T Consensus 214 i~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik--~~~~~~ 291 (469)
T PRK13511 214 VVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILK--AAKDLN 291 (469)
T ss_pred EEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHh--cCCCCC
Confidence 3 22211111 1111100 0 001 11110 0000 011356
Q ss_pred cEEEecccCCC------------------------------------CCC--------CHHHHHHHHHHHh-hCCC--CE
Q 008838 391 LGIGLQGHFSS------------------------------------DQP--------DIAYMRSVLDILG-STGL--PI 423 (551)
Q Consensus 391 DgIG~Q~H~~~------------------------------------~~p--------~~~~i~~~L~~~a-~~gl--pI 423 (551)
|=||++-+... ..| .|..|+..|..+. ..+. ||
T Consensus 292 DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi 371 (469)
T PRK13511 292 DFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKI 371 (469)
T ss_pred CEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCE
Confidence 88888643210 000 1456788888875 4665 79
Q ss_pred EEeeecCCCC-----------cchHHHHHHHHHHHH----cCCCeeEEEEEecccCC----C-CCccccccCCC-----C
Q 008838 424 WLTEVDVDIG-----------PNQSQYLEEILREAY----AHPAVKGIISFSGPAIA----G-FKVMPLADKDF-----K 478 (551)
Q Consensus 424 ~iTEldv~~~-----------~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~----g-~~~~~L~d~d~-----~ 478 (551)
.|||-++... ..+.+|+++.+..+. .--.|.|.+.|++.|.- | ...+||+--|+ .
T Consensus 372 ~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~ 451 (469)
T PRK13511 372 YITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERY 451 (469)
T ss_pred EEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccc
Confidence 9999998621 234566666655444 33468999999998862 3 23688886665 4
Q ss_pred CChhHHHHHHHHHH
Q 008838 479 NTPAGDVVDKLLAE 492 (551)
Q Consensus 479 pKPa~~~~~~l~~~ 492 (551)
||+++..++++++.
T Consensus 452 pK~S~~wy~~~i~~ 465 (469)
T PRK13511 452 PKKSAYWYKKLAET 465 (469)
T ss_pred cccHHHHHHHHHHh
Confidence 89999999999864
No 12
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.07 E-value=1.3e-09 Score=118.01 Aligned_cols=260 Identities=17% Similarity=0.188 Sum_probs=158.3
Q ss_pred ccCceeeeCCCCCCcccccc--CCccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC---CHHHHHHHH
Q 008838 226 SRFKYTTFTNQMKWYSTEKI--QGEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL---SPEELREAA 297 (551)
Q Consensus 226 ~~Fn~~t~eN~~kW~~~Ep~--~G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~---~~~~~~~~~ 297 (551)
-++|+-++ .+.|..++|. +|.+|-.. .+++++-++++||++-- | ++|-. .|.|+... ..++..+.+
T Consensus 70 lg~~~yRf--si~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~v-t-L~H~~--~P~~l~~~ggw~~~~~~~~F 143 (455)
T PF00232_consen 70 LGVNAYRF--SISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIV-T-LYHFD--LPLWLEDYGGWLNRETVDWF 143 (455)
T ss_dssp HT-SEEEE--E--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEE-E-EESS----BHHHHHHTGGGSTHHHHHH
T ss_pred hccceeee--ecchhheeecccccccCHhHhhhhHHHHHHHHhhccceee-e-eeecc--cccceeecccccCHHHHHHH
Confidence 37999999 7999999999 69998554 57999999999999853 3 34433 89999742 234567889
Q ss_pred HHHHHHHHHhcCCceEEEEeeccccccC-------cccccc-c-hH-H---------HHHHHHHHhccCCCceEEE-ecC
Q 008838 298 AKRINSVTSRYAGKLIAWDVVNENLHFR-------FFEDNL-G-EN-A---------SAEFYRIAHQLDPNTIMFL-NEY 357 (551)
Q Consensus 298 ~~~i~~v~~rY~g~i~~WDVvNE~~~~~-------~~~~~~-g-~d-~---------~~~af~~Ar~~dP~a~L~~-Ndy 357 (551)
.+|++.++++|+++|..|=..|||.... .|.... . .. + -+.|+++.|+..|++++-+ ..+
T Consensus 144 ~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~ 223 (455)
T PF00232_consen 144 ARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNF 223 (455)
T ss_dssp HHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEE
T ss_pred HHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccc
Confidence 9999999999999999999999997421 111100 0 01 1 2568899999999998854 222
Q ss_pred Cccccch-----hh--hhhH-HHH-----HH---------HHHH-HhcC---C---C-----CCCcccEEEecccCCC--
Q 008838 358 NTIELAA-----DK--ESNA-VNY-----KK---------KIDE-ILSY---P---G-----NAGMSLGIGLQGHFSS-- 401 (551)
Q Consensus 358 ~~~~~~~-----~~--~~~~-~~~-----~~---------~l~~-l~~~---~---~-----~g~~iDgIG~Q~H~~~-- 401 (551)
... .+. +. .... ..+ ++ .++. +... + . -.+.+|=||+..+...
T Consensus 224 ~~~-~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v 302 (455)
T PF00232_consen 224 SPF-YPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYV 302 (455)
T ss_dssp EEE-EESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEE
T ss_pred ccc-CCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceee
Confidence 221 111 11 0000 111 11 0111 1110 0 0 0346898998643221
Q ss_pred ---C-----------------C------------CCHHHHHHHHHHHh-hCC-CCEEEeeecCCCCc----------chH
Q 008838 402 ---D-----------------Q------------PDIAYMRSVLDILG-STG-LPIWLTEVDVDIGP----------NQS 437 (551)
Q Consensus 402 ---~-----------------~------------p~~~~i~~~L~~~a-~~g-lpI~iTEldv~~~~----------~QA 437 (551)
. . -.|..|+..|..+. ..+ +||.|||.++.... .+-
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri 382 (455)
T PF00232_consen 303 RADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRI 382 (455)
T ss_dssp EESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHH
T ss_pred ccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHH
Confidence 0 0 01567899999985 456 99999999986532 334
Q ss_pred HHHHH----HHHHHHcCCCeeEEEEEecccCC----C-CCccccccCC------CCCChhHHHHHHHHHH
Q 008838 438 QYLEE----ILREAYAHPAVKGIISFSGPAIA----G-FKVMPLADKD------FKNTPAGDVVDKLLAE 492 (551)
Q Consensus 438 ~~~~~----~~~~~~s~p~v~gi~~Wg~~d~~----g-~~~~~L~d~d------~~pKPa~~~~~~l~~~ 492 (551)
+|+++ ++++...--.|.|.+.|.+.|.- | ...+||+.-| .+||+++..++++++.
T Consensus 383 ~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~ 452 (455)
T PF00232_consen 383 DYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRS 452 (455)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHh
Confidence 45444 44544445679999999998753 2 2468998877 6889999999999964
No 13
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.05 E-value=3.7e-08 Score=110.73 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=147.4
Q ss_pred ccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeeec-----CC------CCCCccccCCCHHHHH
Q 008838 226 SRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWD-----NS------KQQPSWVKKLSPEELR 294 (551)
Q Consensus 226 ~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~-----~~------~~~P~W~~~~~~~~~~ 294 (551)
.+||.++. ..+ | ...++++.|.+.||.|---+-.|. .. ...|.|-.....++.+
T Consensus 325 ~G~N~vR~--sh~-----p--------~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (604)
T PRK10150 325 IGANSFRT--SHY-----P--------YSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQ 389 (604)
T ss_pred CCCCEEEe--ccC-----C--------CCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHH
Confidence 48999998 211 1 235889999999997754332221 10 0012222111123456
Q ss_pred HHHHHHHHHHHHhcCC--ceEEEEeeccccccCccccccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHH
Q 008838 295 EAAAKRINSVTSRYAG--KLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVN 372 (551)
Q Consensus 295 ~~~~~~i~~v~~rY~g--~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 372 (551)
+...+.+++++.|++. .|..|-+-||+.... ....++++...+++|+.||.-.+-+.... ..... .
T Consensus 390 ~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~~~~~-~~~~~-------~ 457 (604)
T PRK10150 390 QAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTCVNVM-FATPD-------T 457 (604)
T ss_pred HHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEEEecc-cCCcc-------c
Confidence 7788899999999987 699999999974321 11236778899999999998444432211 00000 0
Q ss_pred HHHHHHHHhcCCCCCCcccEEEecccCCC--CCCCHHH----HHHHHHHHhh-CCCCEEEeeecCCC-------------
Q 008838 373 YKKKIDEILSYPGNAGMSLGIGLQGHFSS--DQPDIAY----MRSVLDILGS-TGLPIWLTEVDVDI------------- 432 (551)
Q Consensus 373 ~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~--~~p~~~~----i~~~L~~~a~-~glpI~iTEldv~~------------- 432 (551)
.. .....|.+|+..+++- ...+... +...|+++.. .++|+.+||++..+
T Consensus 458 -----~~------~~~~~Dv~~~N~Y~~wy~~~~~~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ 526 (604)
T PRK10150 458 -----DT------VSDLVDVLCLNRYYGWYVDSGDLETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWS 526 (604)
T ss_pred -----cc------ccCcccEEEEcccceecCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCC
Confidence 00 0234699998654431 1122222 3344555433 48999999998533
Q ss_pred CcchHHHHHHHHHHHHcCCCeeEEEEEecccC----C----CCCccccccCCCCCChhHHHHHHHH
Q 008838 433 GPNQSQYLEEILREAYAHPAVKGIISFSGPAI----A----GFKVMPLADKDFKNTPAGDVVDKLL 490 (551)
Q Consensus 433 ~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~----~----g~~~~~L~d~d~~pKPa~~~~~~l~ 490 (551)
++.|+++++..+.++.++|.+.|-++|.+.|- . +....||++.|.+|||++..++++.
T Consensus 527 ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~~~k~~~ 592 (604)
T PRK10150 527 EEYQCAFLDMYHRVFDRVPAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAAFLLKKRW 592 (604)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCChHHHHHHHHHh
Confidence 35799999999999999999999999999882 1 1246899999999999998776664
No 14
>PLN02849 beta-glucosidase
Probab=99.03 E-value=5.1e-08 Score=106.26 Aligned_cols=264 Identities=16% Similarity=0.165 Sum_probs=162.0
Q ss_pred HHH-ccCceeeeCCCCCCccccccC-Cccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC----CHHHH
Q 008838 223 WFA-SRFKYTTFTNQMKWYSTEKIQ-GEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL----SPEEL 293 (551)
Q Consensus 223 ~~~-~~Fn~~t~eN~~kW~~~Ep~~-G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~----~~~~~ 293 (551)
+++ -++|+-++ .+.|..|+|.. |.+|-+. .+++++-|.++||++-- || +|=. +|.|+... ...+.
T Consensus 87 Lm~~lG~~aYRf--SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~V-TL-~H~d--lP~~L~~~yGGW~nr~~ 160 (503)
T PLN02849 87 LMVETGLDAFRF--SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHV-TL-FHYD--HPQYLEDDYGGWINRRI 160 (503)
T ss_pred HHHHcCCCeEEE--eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE-ee-cCCC--CcHHHHHhcCCcCCchH
Confidence 444 37999999 79999999973 5566554 37999999999999853 33 3432 89998752 33457
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeeccccccC-------cccc-c-c--------ch----HH---------HHHHHHHH
Q 008838 294 REAAAKRINSVTSRYAGKLIAWDVVNENLHFR-------FFED-N-L--------GE----NA---------SAEFYRIA 343 (551)
Q Consensus 294 ~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~-------~~~~-~-~--------g~----d~---------~~~af~~A 343 (551)
.+.+.+|++.+++||+++|+.|=-.|||.... .+.. . . +. -| -+.|+++.
T Consensus 161 v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~ 240 (503)
T PLN02849 161 IKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLY 240 (503)
T ss_pred HHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999997421 1110 0 0 10 11 13567777
Q ss_pred hcc---CCCceEEE-ecCCcccc----chhhhhh--HHHH-----HHH----------HHHHhcC-C----C----CCCc
Q 008838 344 HQL---DPNTIMFL-NEYNTIEL----AADKESN--AVNY-----KKK----------IDEILSY-P----G----NAGM 389 (551)
Q Consensus 344 r~~---dP~a~L~~-Ndy~~~~~----~~~~~~~--~~~~-----~~~----------l~~l~~~-~----~----~g~~ 389 (551)
|+. .|+.++-+ +....... +.+..+. ...+ ++- ++.+... + + -.+.
T Consensus 241 ~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~ 320 (503)
T PLN02849 241 KQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGS 320 (503)
T ss_pred HHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCC
Confidence 765 37766533 22221111 1111100 0001 000 1101000 0 0 0134
Q ss_pred ccEEEecccCCC---------------------CC-----------CCHHHHHHHHHHHh-hCCC-CEEEeeecCCCC--
Q 008838 390 SLGIGLQGHFSS---------------------DQ-----------PDIAYMRSVLDILG-STGL-PIWLTEVDVDIG-- 433 (551)
Q Consensus 390 iDgIG~Q~H~~~---------------------~~-----------p~~~~i~~~L~~~a-~~gl-pI~iTEldv~~~-- 433 (551)
+|=||++-+... .. ..|..|+..|..+. ..++ ||.|||-++...
T Consensus 321 ~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~ 400 (503)
T PLN02849 321 SDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQD 400 (503)
T ss_pred CCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC
Confidence 577777622100 00 02556888998875 5777 799999998742
Q ss_pred -------cchHHHHHHHHHHHH----cCCCeeEEEEEecccCC----C-CCccccccCCCC-------CChhHHHHHHHH
Q 008838 434 -------PNQSQYLEEILREAY----AHPAVKGIISFSGPAIA----G-FKVMPLADKDFK-------NTPAGDVVDKLL 490 (551)
Q Consensus 434 -------~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~----g-~~~~~L~d~d~~-------pKPa~~~~~~l~ 490 (551)
....+|+++.+..+. .--.|.|.+.|++.|.- | ...+||+--|+. ||+++..++++|
T Consensus 401 ~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii 480 (503)
T PLN02849 401 LQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFL 480 (503)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHH
Confidence 234567666655544 23468999999998752 3 246888866554 799999999999
Q ss_pred HH
Q 008838 491 AE 492 (551)
Q Consensus 491 ~~ 492 (551)
+.
T Consensus 481 ~~ 482 (503)
T PLN02849 481 KG 482 (503)
T ss_pred Hh
Confidence 75
No 15
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.03 E-value=9.3e-08 Score=103.63 Aligned_cols=264 Identities=14% Similarity=0.064 Sum_probs=163.0
Q ss_pred HHHH-ccCceeeeCCCCCCcccccc-CCccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC---CHHHH
Q 008838 222 NWFA-SRFKYTTFTNQMKWYSTEKI-QGEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL---SPEEL 293 (551)
Q Consensus 222 ~~~~-~~Fn~~t~eN~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~---~~~~~ 293 (551)
++++ -++|+-++ .+.|..++|. .|.+|-+. .+++++-|.++||++.- || +|=. +|.|+... ..++.
T Consensus 60 ~L~~~lG~~~yRf--SIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~V-TL-~H~d--lP~~L~~~GGW~n~~~ 133 (467)
T TIGR01233 60 ELAEEYGVNGIRI--SIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFV-TL-HHFD--TPEALHSNGDFLNREN 133 (467)
T ss_pred HHHHHcCCCEEEE--ecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-ec-cCCC--CcHHHHHcCCCCCHHH
Confidence 3444 37999999 7999999996 46665554 47899999999998742 33 4433 89999643 34567
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeeccccccC-------cccccc-ch--H-H---------HHHHHHHHhccCCCceEE
Q 008838 294 REAAAKRINSVTSRYAGKLIAWDVVNENLHFR-------FFEDNL-GE--N-A---------SAEFYRIAHQLDPNTIMF 353 (551)
Q Consensus 294 ~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~-------~~~~~~-g~--d-~---------~~~af~~Ar~~dP~a~L~ 353 (551)
.+.+.+|.+.++++|++ |..|=-.|||.... .+..-. .. . | -+.|+++.|+..|+.++-
T Consensus 134 v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IG 212 (467)
T TIGR01233 134 IEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIG 212 (467)
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 88899999999999997 99999999997421 111000 00 1 1 146888889988987764
Q ss_pred E-ecCCcccc-----chhhhhh-H-HHHH-----H----------HHHHHh----c-C------------CC-CCCcccE
Q 008838 354 L-NEYNTIEL-----AADKESN-A-VNYK-----K----------KIDEIL----S-Y------------PG-NAGMSLG 392 (551)
Q Consensus 354 ~-Ndy~~~~~-----~~~~~~~-~-~~~~-----~----------~l~~l~----~-~------------~~-~g~~iDg 392 (551)
+ ........ +.+..+. . ..+. + +++.+. . . .. ..+.+|=
T Consensus 213 i~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DF 292 (467)
T TIGR01233 213 VVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDF 292 (467)
T ss_pred EEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCE
Confidence 3 22221111 1111100 0 0010 0 001010 0 0 00 0234466
Q ss_pred EEecccCCC------------------------------------CCC--------CHHHHHHHHHHHh-hCCC--CEEE
Q 008838 393 IGLQGHFSS------------------------------------DQP--------DIAYMRSVLDILG-STGL--PIWL 425 (551)
Q Consensus 393 IG~Q~H~~~------------------------------------~~p--------~~~~i~~~L~~~a-~~gl--pI~i 425 (551)
||+..+... ..+ .|..|+..|..+. ..++ ||.|
T Consensus 293 lGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~I 372 (467)
T TIGR01233 293 LGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYI 372 (467)
T ss_pred EEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEE
Confidence 776532110 000 2457888888875 5776 6999
Q ss_pred eeecCCCC----------cchHHHHHHHHHHHHc----CCCeeEEEEEecccCC----C-CCccccccCCC-----CCCh
Q 008838 426 TEVDVDIG----------PNQSQYLEEILREAYA----HPAVKGIISFSGPAIA----G-FKVMPLADKDF-----KNTP 481 (551)
Q Consensus 426 TEldv~~~----------~~QA~~~~~~~~~~~s----~p~v~gi~~Wg~~d~~----g-~~~~~L~d~d~-----~pKP 481 (551)
||-++... ...-+|+++.+..+.. --.|.|.+.|++.|.- | ...+||+--|+ +||+
T Consensus 373 tENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~ 452 (467)
T TIGR01233 373 TENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKK 452 (467)
T ss_pred eCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCcccccc
Confidence 99998742 2345666666554432 3458999999998752 3 23678876655 4899
Q ss_pred hHHHHHHHHHH
Q 008838 482 AGDVVDKLLAE 492 (551)
Q Consensus 482 a~~~~~~l~~~ 492 (551)
++..++++|+.
T Consensus 453 S~~wy~~ii~~ 463 (467)
T TIGR01233 453 SAHWYKKLAET 463 (467)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 16
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.00 E-value=8.5e-08 Score=103.90 Aligned_cols=265 Identities=16% Similarity=0.132 Sum_probs=163.7
Q ss_pred HHHH-ccCceeeeCCCCCCcccccc--CCccch---hhhHHHHHHHHHCCceEEEeEeeecCCCCCCccccC----CCHH
Q 008838 222 NWFA-SRFKYTTFTNQMKWYSTEKI--QGEENY---TIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK----LSPE 291 (551)
Q Consensus 222 ~~~~-~~Fn~~t~eN~~kW~~~Ep~--~G~~~~---~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~----~~~~ 291 (551)
++++ -+||+.++ .+.|..++|. .+.+|- +-.|++++.|+++||.+- +-+.|-. .|.|+.. ....
T Consensus 78 ~l~~~lG~~~yR~--si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~--VtL~H~~--~P~~l~~~~GGW~~~ 151 (474)
T PRK09852 78 ALMAEMGFKVFRT--SIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPL--VTLCHFD--VPMHLVTEYGSWRNR 151 (474)
T ss_pred HHHHHcCCCeEEe--eceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE--EEeeCCC--CCHHHHHhcCCCCCH
Confidence 3444 48999999 7999999997 333443 345899999999999884 2334443 8999864 2345
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeeccccccC---cc-cc---ccc----h-HH---------HHHHHHHHhccCCCc
Q 008838 292 ELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR---FF-ED---NLG----E-NA---------SAEFYRIAHQLDPNT 350 (551)
Q Consensus 292 ~~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~---~~-~~---~~g----~-d~---------~~~af~~Ar~~dP~a 350 (551)
+..+.+.+|.+.+++||+++|..|=..|||.... +. .. ..| . -| -+.|+++.|+..|+.
T Consensus 152 ~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~ 231 (474)
T PRK09852 152 KMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIAHEVNPQN 231 (474)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6778899999999999999999999999997321 11 00 111 1 11 146788889888876
Q ss_pred eEEEe-cCCcccc----chhhhhhH-HHH-----HH----------HHHHHhcC---C----C----CCCcccEEEeccc
Q 008838 351 IMFLN-EYNTIEL----AADKESNA-VNY-----KK----------KIDEILSY---P----G----NAGMSLGIGLQGH 398 (551)
Q Consensus 351 ~L~~N-dy~~~~~----~~~~~~~~-~~~-----~~----------~l~~l~~~---~----~----~g~~iDgIG~Q~H 398 (551)
++-+. .+..... +.+..+.. .++ ++ +.+.+... + + -++.+|=||+..+
T Consensus 232 ~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyY 311 (474)
T PRK09852 232 QVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYY 311 (474)
T ss_pred eEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccc
Confidence 65332 1111110 11111100 000 00 01111100 0 0 0124577777532
Q ss_pred CCC--------------C------CC-----------CHHHHHHHHHHHh-hCCCCEEEeeecCCCC-----------cc
Q 008838 399 FSS--------------D------QP-----------DIAYMRSVLDILG-STGLPIWLTEVDVDIG-----------PN 435 (551)
Q Consensus 399 ~~~--------------~------~p-----------~~~~i~~~L~~~a-~~glpI~iTEldv~~~-----------~~ 435 (551)
... . .| .|..|+..|.++. ..++||.|||-++... ..
T Consensus 312 t~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~ 391 (474)
T PRK09852 312 ASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEIAANGEINDDY 391 (474)
T ss_pred cCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHH
Confidence 110 0 01 2567889998874 6889999999998632 12
Q ss_pred hHHHHHHHHHHHH----cCCCeeEEEEEecccC----CC--CCccccccCCCC----------CChhHHHHHHHHHH
Q 008838 436 QSQYLEEILREAY----AHPAVKGIISFSGPAI----AG--FKVMPLADKDFK----------NTPAGDVVDKLLAE 492 (551)
Q Consensus 436 QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~----~g--~~~~~L~d~d~~----------pKPa~~~~~~l~~~ 492 (551)
.-+|+++.+..+. .--.|.|.+.|++.|. .| ...+||+--|+. ||+++..++++|+.
T Consensus 392 Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~~ 468 (474)
T PRK09852 392 RISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIAS 468 (474)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 3456655554443 2345899999999875 24 236888866655 89999999999963
No 17
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=98.98 E-value=1.6e-07 Score=102.13 Aligned_cols=265 Identities=17% Similarity=0.141 Sum_probs=164.3
Q ss_pred HHHH-ccCceeeeCCCCCCcccccc--CCccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC----CHH
Q 008838 222 NWFA-SRFKYTTFTNQMKWYSTEKI--QGEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL----SPE 291 (551)
Q Consensus 222 ~~~~-~~Fn~~t~eN~~kW~~~Ep~--~G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~----~~~ 291 (551)
++++ -++|+-++ .+.|..++|. .|.+|-.. .+++++.|.++||++.- | ++|=. +|.|+... ..+
T Consensus 80 ~Lm~~lG~~aYRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~V-T-L~H~d--lP~~L~~~~GGW~n~ 153 (478)
T PRK09593 80 ALFAEMGFKTYRM--SIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLV-T-ITHFD--CPMHLIEEYGGWRNR 153 (478)
T ss_pred HHHHHcCCCEEEE--ecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-E-ecccC--CCHHHHhhcCCCCCh
Confidence 4554 47999999 7999999997 45556544 47999999999998842 3 34443 89999632 334
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeeccccccC---cc-cc---ccch-----HH---------HHHHHHHHhccCCCc
Q 008838 292 ELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR---FF-ED---NLGE-----NA---------SAEFYRIAHQLDPNT 350 (551)
Q Consensus 292 ~~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~---~~-~~---~~g~-----d~---------~~~af~~Ar~~dP~a 350 (551)
+..+.+.+|.+.+++||+++|..|=-+|||.... .+ .. ..|. -| -+.|+++.|+..|+.
T Consensus 154 ~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g 233 (478)
T PRK09593 154 KMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIAHEVDPEN 233 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5678899999999999999999999999997421 11 00 1121 11 146788888888886
Q ss_pred eEEE-ecCCcccc----chhhhhhH-HHH-----HH---------H-HHHHhc---CC---------CCCCcccEEEecc
Q 008838 351 IMFL-NEYNTIEL----AADKESNA-VNY-----KK---------K-IDEILS---YP---------GNAGMSLGIGLQG 397 (551)
Q Consensus 351 ~L~~-Ndy~~~~~----~~~~~~~~-~~~-----~~---------~-l~~l~~---~~---------~~g~~iDgIG~Q~ 397 (551)
++-+ ..+..... +.+..+.. ..+ ++ . .+.+.. .+ -..+.+|=||+.-
T Consensus 234 ~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNy 313 (478)
T PRK09593 234 KVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSY 313 (478)
T ss_pred eEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEec
Confidence 6633 22221111 11111100 000 00 0 011100 00 0024568788753
Q ss_pred cCCC--------------C------CC-----------CHHHHHHHHHHHh-hCCCCEEEeeecCCCC-----------c
Q 008838 398 HFSS--------------D------QP-----------DIAYMRSVLDILG-STGLPIWLTEVDVDIG-----------P 434 (551)
Q Consensus 398 H~~~--------------~------~p-----------~~~~i~~~L~~~a-~~glpI~iTEldv~~~-----------~ 434 (551)
+... . .| .|..|+..|..+. ..++||.|||-++... .
T Consensus 314 Yt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~ 393 (478)
T PRK09593 314 YSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQKPMFIVENGLGAVDKPDENGYVEDD 393 (478)
T ss_pred ccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCH
Confidence 2110 0 01 2457888888874 5789999999988632 1
Q ss_pred chHHHHHHHHHHHH-----cCCCeeEEEEEecccC----CC--CCccccccCCCC----------CChhHHHHHHHHHH
Q 008838 435 NQSQYLEEILREAY-----AHPAVKGIISFSGPAI----AG--FKVMPLADKDFK----------NTPAGDVVDKLLAE 492 (551)
Q Consensus 435 ~QA~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~----~g--~~~~~L~d~d~~----------pKPa~~~~~~l~~~ 492 (551)
..-+|+++.|..+. .--.|.|.+.|++.|. .| ...+||+--|+. ||+++..++++++.
T Consensus 394 ~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ 472 (478)
T PRK09593 394 YRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIAS 472 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 23456655544433 3345899999999775 23 236888866654 89999999999964
No 18
>PLN02814 beta-glucosidase
Probab=98.98 E-value=8.2e-08 Score=104.68 Aligned_cols=265 Identities=13% Similarity=0.155 Sum_probs=162.3
Q ss_pred HHHHc-cCceeeeCCCCCCcccccc-CCccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC----CHHH
Q 008838 222 NWFAS-RFKYTTFTNQMKWYSTEKI-QGEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL----SPEE 292 (551)
Q Consensus 222 ~~~~~-~Fn~~t~eN~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~----~~~~ 292 (551)
+++++ ++|+-++ .+.|..++|. +|.+|-+. .+++++-|.++||++.- || +|=. +|.|+... ...+
T Consensus 84 ~L~k~lG~~ayRf--SIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~V-TL-~H~d--lP~~L~~~yGGW~n~~ 157 (504)
T PLN02814 84 KLMAEMGLESFRF--SISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHV-TL-YHYD--LPQSLEDEYGGWINRK 157 (504)
T ss_pred HHHHHcCCCEEEE--eccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEE-Ee-cCCC--CCHHHHHhcCCcCChh
Confidence 34443 7999999 7999999996 56677655 47999999999998852 44 4433 89998752 3456
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEeeccccccCc--cc-c-cc-------------c---hH-H---------HHHHHHH
Q 008838 293 LREAAAKRINSVTSRYAGKLIAWDVVNENLHFRF--FE-D-NL-------------G---EN-A---------SAEFYRI 342 (551)
Q Consensus 293 ~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~~--~~-~-~~-------------g---~d-~---------~~~af~~ 342 (551)
..+.+.+|++.+++||+++|..|=..|||..... +. . .. + .+ | -+.|+++
T Consensus 158 ~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~ 237 (504)
T PLN02814 158 IIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNL 237 (504)
T ss_pred HHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999974210 00 0 00 0 01 1 1457777
Q ss_pred Hhcc---CCCceEEE-ecCCcccc----chhhhhh--HHHHH-----HH---------HHH-HhcC-C----C----CCC
Q 008838 343 AHQL---DPNTIMFL-NEYNTIEL----AADKESN--AVNYK-----KK---------IDE-ILSY-P----G----NAG 388 (551)
Q Consensus 343 Ar~~---dP~a~L~~-Ndy~~~~~----~~~~~~~--~~~~~-----~~---------l~~-l~~~-~----~----~g~ 388 (551)
.|+. .|+.++-+ +.+..... +.+..+. ...|. +- +++ +... + + -.+
T Consensus 238 ~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg 317 (504)
T PLN02814 238 YKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKG 317 (504)
T ss_pred HHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcC
Confidence 7764 67655533 22221111 1111100 00011 00 010 1000 0 0 012
Q ss_pred cccEEEecccCCC----------------C--------------C------CCHHHHHHHHHHHh-hCCC-CEEEeeecC
Q 008838 389 MSLGIGLQGHFSS----------------D--------------Q------PDIAYMRSVLDILG-STGL-PIWLTEVDV 430 (551)
Q Consensus 389 ~iDgIG~Q~H~~~----------------~--------------~------p~~~~i~~~L~~~a-~~gl-pI~iTEldv 430 (551)
++|=||++.+... . . -.|..|+..|..+. ..+. ||.|||-++
T Consensus 318 ~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~ 397 (504)
T PLN02814 318 SSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGM 397 (504)
T ss_pred CCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4576776532110 0 0 02567888998875 4666 799999998
Q ss_pred CCC-------cchHHHHHHHHHHHH----cCCCeeEEEEEecccCC----C-CCccccccCCCC-------CChhHHHHH
Q 008838 431 DIG-------PNQSQYLEEILREAY----AHPAVKGIISFSGPAIA----G-FKVMPLADKDFK-------NTPAGDVVD 487 (551)
Q Consensus 431 ~~~-------~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~----g-~~~~~L~d~d~~-------pKPa~~~~~ 487 (551)
... ..+.+|+++.+..+. .--.|.|.+.|++.|.- | ...+||+--|+. ||+++..++
T Consensus 398 ~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~ 477 (504)
T PLN02814 398 PMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYT 477 (504)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHH
Confidence 631 345566666665443 33468999999998752 3 236888755554 799999999
Q ss_pred HHHHH
Q 008838 488 KLLAE 492 (551)
Q Consensus 488 ~l~~~ 492 (551)
++++.
T Consensus 478 ~~i~~ 482 (504)
T PLN02814 478 GFLNG 482 (504)
T ss_pred HHHhc
Confidence 99963
No 19
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=98.96 E-value=1.6e-07 Score=102.04 Aligned_cols=261 Identities=20% Similarity=0.176 Sum_probs=163.8
Q ss_pred HHHHc-cCceeeeCCCCCCcccccc--CCccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccC----CCHH
Q 008838 222 NWFAS-RFKYTTFTNQMKWYSTEKI--QGEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK----LSPE 291 (551)
Q Consensus 222 ~~~~~-~Fn~~t~eN~~kW~~~Ep~--~G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~----~~~~ 291 (551)
+++++ ++|+-++ .+.|..|+|. .|.+|-+. .+++++-|.++||++.- || +|=. +|.|+.. ....
T Consensus 74 ~Lm~~lG~~~yRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~V-TL-~H~d--lP~~L~~~yGGW~n~ 147 (476)
T PRK09589 74 ALFAEMGFKCFRT--SIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVV-TL-SHFE--MPYHLVTEYGGWRNR 147 (476)
T ss_pred HHHHHcCCCEEEe--ccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cCCC--CCHHHHHhcCCcCCh
Confidence 44544 7999999 7999999997 44455544 47999999999998842 33 4543 8999863 2334
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeeccccccC--------cc-cc---ccch---H--HH---------HHHHHHHhc
Q 008838 292 ELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR--------FF-ED---NLGE---N--AS---------AEFYRIAHQ 345 (551)
Q Consensus 292 ~~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~--------~~-~~---~~g~---d--~~---------~~af~~Ar~ 345 (551)
+..+.+.+|++.++++|+++|..|=-.|||.... +. .. ..|. . |. +.|+++.|+
T Consensus 148 ~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~ 227 (476)
T PRK09589 148 KLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQIMYQAAHYELVASALAVKTGHE 227 (476)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999997421 11 00 0111 1 11 457888888
Q ss_pred cCCCceEEEe-cCCccc----cchhhhhh-H------------------HHHHHHHHH-------------HhcCCCCCC
Q 008838 346 LDPNTIMFLN-EYNTIE----LAADKESN-A------------------VNYKKKIDE-------------ILSYPGNAG 388 (551)
Q Consensus 346 ~dP~a~L~~N-dy~~~~----~~~~~~~~-~------------------~~~~~~l~~-------------l~~~~~~g~ 388 (551)
..|+.++-+. .+.... .+.+..+. . ..+.+.+.. ++ ..+
T Consensus 228 ~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l----~~g 303 (476)
T PRK09589 228 INPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAIL----AEG 303 (476)
T ss_pred hCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHH----hcC
Confidence 8898766321 111111 11111100 0 000111111 00 023
Q ss_pred cccEEEecccCCC---------------------C----------CCCHHHHHHHHHHHh-hCCCCEEEeeecCCCC---
Q 008838 389 MSLGIGLQGHFSS---------------------D----------QPDIAYMRSVLDILG-STGLPIWLTEVDVDIG--- 433 (551)
Q Consensus 389 ~iDgIG~Q~H~~~---------------------~----------~p~~~~i~~~L~~~a-~~glpI~iTEldv~~~--- 433 (551)
.+|=||++.+... + .-.|..|+..|.++. ..++||.|||-++...
T Consensus 304 ~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~~Pi~ItENG~~~~d~~ 383 (476)
T PRK09589 304 CVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQLPLFIVENGFGAIDQR 383 (476)
T ss_pred CCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEEeCCcccCCCC
Confidence 4577777532210 0 012457888998874 5789999999988631
Q ss_pred --------cchHHHHHHHHHHHH-----cCCCeeEEEEEecccC----CC--CCccccccCCCC----------CChhHH
Q 008838 434 --------PNQSQYLEEILREAY-----AHPAVKGIISFSGPAI----AG--FKVMPLADKDFK----------NTPAGD 484 (551)
Q Consensus 434 --------~~QA~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~----~g--~~~~~L~d~d~~----------pKPa~~ 484 (551)
...-+|+++.+..+. .--.|.|.+.|++.|. .| ...+||+--|+. ||+++.
T Consensus 384 ~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~ 463 (476)
T PRK09589 384 EADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFY 463 (476)
T ss_pred CcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHH
Confidence 134456555544433 2345899999999875 23 246888866554 899999
Q ss_pred HHHHHHHH
Q 008838 485 VVDKLLAE 492 (551)
Q Consensus 485 ~~~~l~~~ 492 (551)
.++++++.
T Consensus 464 wy~~~i~~ 471 (476)
T PRK09589 464 WYRDVIAN 471 (476)
T ss_pred HHHHHHHh
Confidence 99999863
No 20
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=98.92 E-value=3.3e-07 Score=99.51 Aligned_cols=266 Identities=15% Similarity=0.100 Sum_probs=164.2
Q ss_pred HHHHHc-cCceeeeCCCCCCcccccc--CCccchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccC----CCH
Q 008838 221 QNWFAS-RFKYTTFTNQMKWYSTEKI--QGEENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKK----LSP 290 (551)
Q Consensus 221 ~~~~~~-~Fn~~t~eN~~kW~~~Ep~--~G~~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~----~~~ 290 (551)
-+++++ +||+.++ .+.|..++|. .|.+|-.. .+++++.|.++||++-- || +|-. .|.|+.. ...
T Consensus 75 I~Lm~elG~~~yRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~v-TL-~H~d--lP~~L~~~yGGW~n 148 (477)
T PRK15014 75 IKLFAEMGFKCFRT--SIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVI-TL-SHFE--MPLHLVQQYGSWTN 148 (477)
T ss_pred HHHHHHcCCCEEEe--cccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-eCCC--CCHHHHHhcCCCCC
Confidence 345544 8999999 7999999997 34455443 58999999999998852 33 4433 8999964 223
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEeecccccc--------Cccc-cc---cc----h-HH---------HHHHHHHHh
Q 008838 291 EELREAAAKRINSVTSRYAGKLIAWDVVNENLHF--------RFFE-DN---LG----E-NA---------SAEFYRIAH 344 (551)
Q Consensus 291 ~~~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~--------~~~~-~~---~g----~-d~---------~~~af~~Ar 344 (551)
.+..+.+.+|.+.+++||+++|..|=..|||... .+.. .. .+ . -| -+.|+++.|
T Consensus 149 ~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~ 228 (477)
T PRK15014 149 RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAAR 228 (477)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999632 1110 00 11 1 11 146888889
Q ss_pred ccCCCceEEEe-cCCccc----cchhhhhhHH----H--HHH----------HHHHHhc--C-C---------CCCCccc
Q 008838 345 QLDPNTIMFLN-EYNTIE----LAADKESNAV----N--YKK----------KIDEILS--Y-P---------GNAGMSL 391 (551)
Q Consensus 345 ~~dP~a~L~~N-dy~~~~----~~~~~~~~~~----~--~~~----------~l~~l~~--~-~---------~~g~~iD 391 (551)
+..|+.++-+. ...... .+.+..+... . |++ +++.+.. . + -..+.+|
T Consensus 229 ~~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~D 308 (477)
T PRK15014 229 RINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCD 308 (477)
T ss_pred HhCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 88898766432 111111 1111111000 0 000 0111110 0 0 0023457
Q ss_pred EEEecccCCC--------------------C----------CCCHHHHHHHHHHHh-hCCCCEEEeeecCCCC-------
Q 008838 392 GIGLQGHFSS--------------------D----------QPDIAYMRSVLDILG-STGLPIWLTEVDVDIG------- 433 (551)
Q Consensus 392 gIG~Q~H~~~--------------------~----------~p~~~~i~~~L~~~a-~~glpI~iTEldv~~~------- 433 (551)
=||+.-+... + .-.|..|+..|..+. ..++||.|||-++...
T Consensus 309 FlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g 388 (477)
T PRK15014 309 YLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEEDG 388 (477)
T ss_pred EEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCcCC
Confidence 7776533110 0 012457888998874 5789999999998741
Q ss_pred ----cchHHHHHHHHHHHH-----cCCCeeEEEEEecccC----CC--CCccccccCCC----------CCChhHHHHHH
Q 008838 434 ----PNQSQYLEEILREAY-----AHPAVKGIISFSGPAI----AG--FKVMPLADKDF----------KNTPAGDVVDK 488 (551)
Q Consensus 434 ----~~QA~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~----~g--~~~~~L~d~d~----------~pKPa~~~~~~ 488 (551)
...-+|+++.|..+. .--.|.|.+.|++.|. .| ...+||+--|+ .||+++..+++
T Consensus 389 ~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ 468 (477)
T PRK15014 389 SINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKE 468 (477)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHHHHHHH
Confidence 134456666554433 3345899999999774 23 24688884443 48999999999
Q ss_pred HHHH
Q 008838 489 LLAE 492 (551)
Q Consensus 489 l~~~ 492 (551)
+|+.
T Consensus 469 ii~~ 472 (477)
T PRK15014 469 VIAS 472 (477)
T ss_pred HHHh
Confidence 9963
No 21
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.87 E-value=7.6e-08 Score=95.48 Aligned_cols=164 Identities=18% Similarity=0.115 Sum_probs=107.9
Q ss_pred CCceEEEEeeccccccCccccccch-HHHHHHHHHHhc-cCCCceEEEecCCccccchhhhhhHHHHHHH-HHHHhcCCC
Q 008838 309 AGKLIAWDVVNENLHFRFFEDNLGE-NASAEFYRIAHQ-LDPNTIMFLNEYNTIELAADKESNAVNYKKK-IDEILSYPG 385 (551)
Q Consensus 309 ~g~i~~WDVvNE~~~~~~~~~~~g~-d~~~~af~~Ar~-~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~-l~~l~~~~~ 385 (551)
+..+.++-.+|||+... ...+.+ +++..+-+.... .++.++|.--........ .. ....+++. ++.+.
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~~~~~l~sPa~~~~~~~-~~--~g~~Wl~~F~~~~~---- 133 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRSPGVKLGSPAVAFTNGG-TP--GGLDWLSQFLSACA---- 133 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhcCCcEEECCeecccCCC-CC--CccHHHHHHHHhcc----
Confidence 67799999999998754 223333 344333332222 148888876443211110 00 01223332 22221
Q ss_pred CCCcccEEEecccCCCCCCCHHHHHHHHHHH-hhCCCCEEEeeecCCC------CcchHHHHHHHHHHHHcCCCeeEEEE
Q 008838 386 NAGMSLGIGLQGHFSSDQPDIAYMRSVLDIL-GSTGLPIWLTEVDVDI------GPNQSQYLEEILREAYAHPAVKGIIS 458 (551)
Q Consensus 386 ~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~-a~~glpI~iTEldv~~------~~~QA~~~~~~~~~~~s~p~v~gi~~ 458 (551)
.+..+|.|.+|.+ . .++..+...|+.+ ..+|+||||||+.... .+.|++++++++..+-+.|.|+++.|
T Consensus 134 ~~~~~D~iavH~Y--~--~~~~~~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~~Veryaw 209 (239)
T PF11790_consen 134 RGCRVDFIAVHWY--G--GDADDFKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQPYVERYAW 209 (239)
T ss_pred cCCCccEEEEecC--C--cCHHHHHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEe
Confidence 2567999999665 2 3467888889988 5789999999998642 25789999999999999999999999
Q ss_pred EecccCC-C-CCccccccCCCCCChhHHH
Q 008838 459 FSGPAIA-G-FKVMPLADKDFKNTPAGDV 485 (551)
Q Consensus 459 Wg~~d~~-g-~~~~~L~d~d~~pKPa~~~ 485 (551)
+++.+.. + .....|++.+.++.|.++.
T Consensus 210 F~~~~~~~~~~~~~~L~~~~G~lt~lG~~ 238 (239)
T PF11790_consen 210 FGFMNDGSGVNPNSALLDADGSLTPLGKA 238 (239)
T ss_pred cccccccCCCccccccccCCCCcChhhhh
Confidence 9954322 1 3456889988999888765
No 22
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=2.2e-06 Score=84.49 Aligned_cols=273 Identities=16% Similarity=0.183 Sum_probs=183.7
Q ss_pred ecCCCceEEeecCC---------CCC-C---hHHHHHHH-ccCceeeeCCCCCCccccccC------CccchhhhHHHHH
Q 008838 200 IKSDFPFGCGMNNY---------ILT-S---TEYQNWFA-SRFKYTTFTNQMKWYSTEKIQ------GEENYTIADAMLQ 259 (551)
Q Consensus 200 ~~~~F~fG~a~~~~---------~~~-~---~~~~~~~~-~~Fn~~t~eN~~kW~~~Ep~~------G~~~~~~~D~~v~ 259 (551)
.+.+|.+|+-++.- ..+ + +.-.++++ .+.|.++++ -|..=-... |.-+...+-++.+
T Consensus 35 ~~~dFikGaDis~l~~lE~~Gvkf~d~ng~~qD~~~iLK~~GvNyvRlR---vwndP~dsngn~yggGnnD~~k~ieiak 111 (403)
T COG3867 35 SPNDFIKGADISSLIELENSGVKFFDTNGVRQDALQILKNHGVNYVRLR---VWNDPYDSNGNGYGGGNNDLKKAIEIAK 111 (403)
T ss_pred ChHHhhccccHHHHHHHHHcCceEEccCChHHHHHHHHHHcCcCeEEEE---EecCCccCCCCccCCCcchHHHHHHHHH
Confidence 66778888876531 111 1 22334454 579999984 343211121 3345566678888
Q ss_pred HHHHCCceEEE--eEe-eecCCC--CCC-ccccCCCHHHHHHHHHHHHHHHHHhcCC---ceEEEEeeccccccCccccc
Q 008838 260 FCEKNGISVRG--HNI-FWDNSK--QQP-SWVKKLSPEELREAAAKRINSVTSRYAG---KLIAWDVVNENLHFRFFEDN 330 (551)
Q Consensus 260 ~a~~~gi~vrG--H~L-vW~~~~--~~P-~W~~~~~~~~~~~~~~~~i~~v~~rY~g---~i~~WDVvNE~~~~~~~~~~ 330 (551)
-|+.+||+|.. |.- +|..+. ..| .|. .++.++++.++.+|-+.++++.+. .+..-.|-||....-.|..-
T Consensus 112 RAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~-~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~G 190 (403)
T COG3867 112 RAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE-NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDG 190 (403)
T ss_pred HHHhcCcEEEeeccchhhccChhhcCCcHHhh-hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCC
Confidence 99999999853 332 343321 123 343 357889999999999999988864 57788999998766556432
Q ss_pred cch------HHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCCCC
Q 008838 331 LGE------NASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQP 404 (551)
Q Consensus 331 ~g~------d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p 404 (551)
-|. ..+.++++++|+.+|+.++.+---+ +.. ...|.....+|.. +++++|.||+..+.. ...
T Consensus 191 e~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~----g~~----n~~y~~~fd~ltk---~nvdfDVig~SyYpy-Whg 258 (403)
T COG3867 191 EGRNFDKMAALLNAGIRAVREVSPTIKVALHLAE----GEN----NSLYRWIFDELTK---RNVDFDVIGSSYYPY-WHG 258 (403)
T ss_pred CCcChHHHHHHHHHHhhhhhhcCCCceEEEEecC----CCC----CchhhHHHHHHHH---cCCCceEEeeecccc-ccC
Confidence 222 2456789999999999999985322 211 1234444455555 689999999976532 223
Q ss_pred CHHHHHHHHHHHhh-CCCCEEEeeecCCC---------------C---------cchHHHHHHHHHHHHcCCC--eeEEE
Q 008838 405 DIAYMRSVLDILGS-TGLPIWLTEVDVDI---------------G---------PNQSQYLEEILREAYAHPA--VKGII 457 (551)
Q Consensus 405 ~~~~i~~~L~~~a~-~glpI~iTEldv~~---------------~---------~~QA~~~~~~~~~~~s~p~--v~gi~ 457 (551)
.+..+...|+..++ .++.+.|-|....- + +-||.++++++....+.|. -.||+
T Consensus 259 tl~nL~~nl~dia~rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvF 338 (403)
T COG3867 259 TLNNLTTNLNDIASRYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVF 338 (403)
T ss_pred cHHHHHhHHHHHHHHhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEE
Confidence 57888899999875 79999999976521 0 4689999999999998875 46899
Q ss_pred EEec-c-----------------cCC----C--CCccccccCCCCCChhHHHHHH
Q 008838 458 SFSG-P-----------------AIA----G--FKVMPLADKDFKNTPAGDVVDK 488 (551)
Q Consensus 458 ~Wg~-~-----------------d~~----g--~~~~~L~d~d~~pKPa~~~~~~ 488 (551)
.|.. | ||. | ..+..|||-+..|.|+..++.-
T Consensus 339 YWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl~vFn~ 393 (403)
T COG3867 339 YWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSLNVFNY 393 (403)
T ss_pred EecccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcchhhhhh
Confidence 9984 2 111 1 2367899999999999988753
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.49 E-value=4.9e-06 Score=85.37 Aligned_cols=214 Identities=18% Similarity=0.193 Sum_probs=124.4
Q ss_pred HccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeeecCCCCCCccc---cCCCHHHHHHHHHHHH
Q 008838 225 ASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWV---KKLSPEELREAAAKRI 301 (551)
Q Consensus 225 ~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~---~~~~~~~~~~~~~~~i 301 (551)
..+||.++. .-+. ...+++++|.+.||.|-.-...+... ....+- .....++..+.+.+.+
T Consensus 47 ~~G~N~iR~--~h~p-------------~~~~~~~~cD~~GilV~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (298)
T PF02836_consen 47 EMGFNAIRT--HHYP-------------PSPRFYDLCDELGILVWQEIPLEGHG-SWQDFGNCNYDADDPEFRENAEQEL 110 (298)
T ss_dssp HTT-SEEEE--TTS---------------SHHHHHHHHHHT-EEEEE-S-BSCT-SSSSTSCTSCTTTSGGHHHHHHHHH
T ss_pred hcCcceEEc--cccc-------------CcHHHHHHHhhcCCEEEEeccccccC-ccccCCccccCCCCHHHHHHHHHHH
Confidence 458999998 2222 23588999999999885443321100 000010 0112345677888899
Q ss_pred HHHHHhcCC--ceEEEEeeccccccCccccccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHH
Q 008838 302 NSVTSRYAG--KLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDE 379 (551)
Q Consensus 302 ~~v~~rY~g--~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~ 379 (551)
++++.|++. .|..|-+-||+ ....+++...+.+|+.||.-.+.++.... .
T Consensus 111 ~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~-~------------------ 162 (298)
T PF02836_consen 111 REMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYASNGW-D------------------ 162 (298)
T ss_dssp HHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTS-G------------------
T ss_pred HHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeeccccc-c------------------
Confidence 999999987 69999999998 22357788999999999997665543210 0
Q ss_pred HhcCCCCCCcccEEEec--ccCCCCCCCHHHHHHHHHHH-hhCCCCEEEeeecCCCCc-----------------chHHH
Q 008838 380 ILSYPGNAGMSLGIGLQ--GHFSSDQPDIAYMRSVLDIL-GSTGLPIWLTEVDVDIGP-----------------NQSQY 439 (551)
Q Consensus 380 l~~~~~~g~~iDgIG~Q--~H~~~~~p~~~~i~~~L~~~-a~~glpI~iTEldv~~~~-----------------~QA~~ 439 (551)
..+|.+++- .........+..+...++.. ...++|+.+||++..... .|..+
T Consensus 163 --------~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~ 234 (298)
T PF02836_consen 163 --------PYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAF 234 (298)
T ss_dssp --------GSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEE
T ss_pred --------cccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhh
Confidence 001111111 11111123455677777663 568999999999866532 11111
Q ss_pred HHHHHHHHH--cCCCeeEEEEEecccCCC------CCccccccCCCCCChhHHHHHHHH
Q 008838 440 LEEILREAY--AHPAVKGIISFSGPAIAG------FKVMPLADKDFKNTPAGDVVDKLL 490 (551)
Q Consensus 440 ~~~~~~~~~--s~p~v~gi~~Wg~~d~~g------~~~~~L~d~d~~pKPa~~~~~~l~ 490 (551)
.......+. ..+.+.|-++|.+.|=.+ ...-||+|.|.+||++|..++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~ 293 (298)
T PF02836_consen 235 IWDYQDQAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQW 293 (298)
T ss_dssp ESHSBHHHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHH
T ss_pred hhhhhhhhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHh
Confidence 112222222 245677777887765221 113499999999999998777654
No 24
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=1.3e-05 Score=85.02 Aligned_cols=264 Identities=18% Similarity=0.186 Sum_probs=160.7
Q ss_pred HHHHc-cCceeeeCCCCCCccccccCCc--cchhh---hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCC----CHH
Q 008838 222 NWFAS-RFKYTTFTNQMKWYSTEKIQGE--ENYTI---ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL----SPE 291 (551)
Q Consensus 222 ~~~~~-~Fn~~t~eN~~kW~~~Ep~~G~--~~~~~---~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~----~~~ 291 (551)
+|+++ +||+.++ .+.|..+.|..+. .|-.. -|++++-|.++||...- || .|=. +|-|+... -..
T Consensus 66 ~L~~emG~~~~R~--SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~v-TL-~Hfd--~P~~L~~~ygGW~nR 139 (460)
T COG2723 66 ALAKEMGLNAFRT--SIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFV-TL-YHFD--LPLWLQKPYGGWENR 139 (460)
T ss_pred HHHHHcCCCEEEe--eeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cccC--CcHHHhhccCCccCH
Confidence 45544 7999999 7999999997655 55443 48999999999998853 44 3322 78888753 234
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeeccccccC-------cccc-ccchH-H----------HHHHHHHHhccCCC--c
Q 008838 292 ELREAAAKRINSVTSRYAGKLIAWDVVNENLHFR-------FFED-NLGEN-A----------SAEFYRIAHQLDPN--T 350 (551)
Q Consensus 292 ~~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~-------~~~~-~~g~d-~----------~~~af~~Ar~~dP~--a 350 (551)
+..+++.+|++.+++||+++|.+|=..|||+... .+.. ..... . -+.|.+..|+..|+ +
T Consensus 140 ~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kI 219 (460)
T COG2723 140 ETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHALAVKAIKKINPKGKV 219 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcCce
Confidence 5678899999999999999999999999997421 1110 11111 1 14678888998885 5
Q ss_pred eEEEecCCc--cc-cchhhhhhH-HH------HHH----------HHHHHhcC---C----C-----CCCcccEEEeccc
Q 008838 351 IMFLNEYNT--IE-LAADKESNA-VN------YKK----------KIDEILSY---P----G-----NAGMSLGIGLQGH 398 (551)
Q Consensus 351 ~L~~Ndy~~--~~-~~~~~~~~~-~~------~~~----------~l~~l~~~---~----~-----~g~~iDgIG~Q~H 398 (551)
-+.+|--.. .+ .+.+..+.. .+ |++ +++.++.. + + +.+.+|=||+--+
T Consensus 220 G~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY 299 (460)
T COG2723 220 GIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYY 299 (460)
T ss_pred EEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeee
Confidence 555552211 11 111111000 00 111 11111110 0 0 0123688887544
Q ss_pred C-C------C--------C-------CC-----------CHHHHHHHHHHHh-hCCCCEEEeeecCCCC----------c
Q 008838 399 F-S------S--------D-------QP-----------DIAYMRSVLDILG-STGLPIWLTEVDVDIG----------P 434 (551)
Q Consensus 399 ~-~------~--------~-------~p-----------~~~~i~~~L~~~a-~~glpI~iTEldv~~~----------~ 434 (551)
. . . . .| .|..|+..|.++- +.++|+.|||-++... .
T Consensus 300 ~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~~p~fItENG~G~~d~~~~~~i~Dd 379 (460)
T COG2723 300 TPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDILEKLYERYGIPLFITENGLGVKDEVDFDGINDD 379 (460)
T ss_pred eeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHHHHHHHHHhCCCeEEecCCCCcccccccCCcCch
Confidence 3 0 0 0 01 3567889999876 7899999999875431 1
Q ss_pred chHHHHHHHHHHHH----cCCCeeEEEEEecccCC----C-CCccccccC------CCCCChhHHHHHHHHH
Q 008838 435 NQSQYLEEILREAY----AHPAVKGIISFSGPAIA----G-FKVMPLADK------DFKNTPAGDVVDKLLA 491 (551)
Q Consensus 435 ~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~----g-~~~~~L~d~------d~~pKPa~~~~~~l~~ 491 (551)
..-+|+++-+..+. .--.|.|.+.|++.|.- | ..++||+-- ..++|+++..+++++.
T Consensus 380 yRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 380 YRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHh
Confidence 23356655554432 33468999999997742 2 224566522 3457888888888875
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.41 E-value=3.7e-05 Score=79.50 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=136.3
Q ss_pred CceEEeecCCCCCChHHHHHH----HccCceeeeCCCCCCccccccCCccchhh---hHHHHHHHHHCCceEEEeE--ee
Q 008838 204 FPFGCGMNNYILTSTEYQNWF----ASRFKYTTFTNQMKWYSTEKIQGEENYTI---ADAMLQFCEKNGISVRGHN--IF 274 (551)
Q Consensus 204 F~fG~a~~~~~~~~~~~~~~~----~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~---~D~~v~~a~~~gi~vrGH~--Lv 274 (551)
|.++..+|...+..+.+++.+ ..+||.|.. -+.|...||++|+|+|+. .+++++.|+++||.|.--+ -+
T Consensus 10 ~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~--yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi 87 (319)
T PF01301_consen 10 FILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVST--YVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYI 87 (319)
T ss_dssp -EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEE--E--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES--
T ss_pred EEEEeeeccccCChhHHHHHHHHHHhCCcceEEE--eccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEeccccee
Confidence 678999998877654444444 468999998 799999999999999984 6799999999999873222 11
Q ss_pred ---ecCCCCCCccccCC-------CHHHHHHHHHHHHHHHHHhc-------CCceEEEEeeccccccCccccccchHHHH
Q 008838 275 ---WDNSKQQPSWVKKL-------SPEELREAAAKRINSVTSRY-------AGKLIAWDVVNENLHFRFFEDNLGENASA 337 (551)
Q Consensus 275 ---W~~~~~~P~W~~~~-------~~~~~~~~~~~~i~~v~~rY-------~g~i~~WDVvNE~~~~~~~~~~~g~d~~~ 337 (551)
|.. ...|.|+... +.+..++.+++|.+.++..- +|-|....|=||.- ......+|++
T Consensus 88 ~aE~~~-gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg-----~~~~~~~Y~~ 161 (319)
T PF01301_consen 88 CAEWDN-GGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG-----SYGTDRAYME 161 (319)
T ss_dssp -TTBGG-GG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG-----CTSS-HHHHH
T ss_pred cccccc-hhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC-----CCcccHhHHH
Confidence 211 2489999753 23456777888877766543 36799999999964 1123357888
Q ss_pred HHHHHHhccCCC-ceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCC-CcccEEEecccCCCCCCCHHHHHHHHHH
Q 008838 338 EFYRIAHQLDPN-TIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNA-GMSLGIGLQGHFSSDQPDIAYMRSVLDI 415 (551)
Q Consensus 338 ~af~~Ar~~dP~-a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g-~~iDgIG~Q~H~~~~~p~~~~i~~~L~~ 415 (551)
..-+.+++.-++ +.++-.|....... . . . .+ .+ ......+++++-. +.+....+..
T Consensus 162 ~l~~~~~~~g~~~~~~~t~d~~~~~~~-~-~---~-------~~-----~g~~~~~~~~~~~~~~-----~~~~~~~~~~ 219 (319)
T PF01301_consen 162 ALKDAYRDWGIDPVLLYTTDGPWGSWL-P-D---G-------GL-----PGADIYATDNFPPGDN-----PDEYFGDQRS 219 (319)
T ss_dssp HHHHHHHHTT-SSSBEEEEESSSHCCH-C-C---C--------T-----TTGSCEEEEEETTTSS-----HHHHHHHHHH
T ss_pred HHHHHHHHhhCccceeeccCCCccccc-c-c---C-------CC-----CcceEEeccccCCCch-----HHHHHhhhhh
Confidence 888888888887 44554444211000 0 0 0 00 12 2346777766521 1111112222
Q ss_pred HhhCCCCEEEeeecCCC-----Cc---chHHHHHHHHHHHHcCCCeeEE------EEEecccCC---------CCCcccc
Q 008838 416 LGSTGLPIWLTEVDVDI-----GP---NQSQYLEEILREAYAHPAVKGI------ISFSGPAIA---------GFKVMPL 472 (551)
Q Consensus 416 ~a~~glpI~iTEldv~~-----~~---~QA~~~~~~~~~~~s~p~v~gi------~~Wg~~d~~---------g~~~~~L 472 (551)
+ ..+.|..++|+-... .+ .-++.+...+...++.....++ |-||++... .-+..+.
T Consensus 220 ~-~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~Ap 298 (319)
T PF01301_consen 220 F-QPNQPLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAP 298 (319)
T ss_dssp H-HTTS--EEEEEESS---BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTTEEB-SB--TT-S
T ss_pred c-CCCCCeEEEEeccccccccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCCCCCcccCCcCCc
Confidence 2 235699999995332 11 1122233333333333222221 223444321 1125678
Q ss_pred ccCCCCCChhHHHHHHHHHH
Q 008838 473 ADKDFKNTPAGDVVDKLLAE 492 (551)
Q Consensus 473 ~d~d~~pKPa~~~~~~l~~~ 492 (551)
++++.++.|-|..+++|++.
T Consensus 299 I~E~G~~~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 299 IDEYGQLTPKYYELRRLHQK 318 (319)
T ss_dssp B-TTS-B-HHHHHHHHHHHT
T ss_pred cCcCCCcCHHHHHHHHHHhc
Confidence 99999999999999999863
No 26
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=98.41 E-value=6.5e-06 Score=76.39 Aligned_cols=128 Identities=18% Similarity=0.291 Sum_probs=82.2
Q ss_pred ceeeCCCcCCC-C----------------CCeeeecceeEEEe---e------ccCCceeEEEeeCCCCCCcceeeeecc
Q 008838 22 GLIVNPEFNRG-T----------------EGWTAFGQAAIREA---T------SEEGNKYIVAHSRTNPLDSFSQKVQLE 75 (551)
Q Consensus 22 ~li~n~~FE~g-~----------------~gW~~~g~~~~~~~---~------~~~G~~~l~vt~Rt~~w~G~~~~v~l~ 75 (551)
|||+|++||++ . .||+..|...+..+ . ...|.+++.. ++... +.|.|...
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveL-g~~~~---I~Q~~~t~ 76 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVEL-GNEGS---ISQTFTTV 76 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEc-CCCce---EEEEEEcc
Confidence 68999999965 2 34555444222111 1 3678899988 33333 99999999
Q ss_pred CCCEEEEEEEEEEcCC-CceEEEEEEeCCCeeEEceeEEEeCCCeEEEEeEEEeCCCCcEEEEEEeC----CCceeEEEe
Q 008838 76 KGKLYSFSAWIQVSRG-SDTVAAVFKTSDGKLIDAGKVLAKHGCWSLLKGGLAANFTSLVEILFESK----NAEMEIWAD 150 (551)
Q Consensus 76 ~G~~Y~~SawVk~~~g-s~~~~~~l~~~~g~~~~~~~~~~~~~~Wt~l~g~~t~~~~~~~~iy~e~~----~~~~d~~vD 150 (551)
+|++|+++..+.-... +..+++.+... .............+.|+..+-.|+. ..+.+++.+..+ +...-=+||
T Consensus 77 ~G~~Y~LtF~~~~~~~~~~~l~V~v~~~-~~~~~~~~~~~~~~~w~~~s~~F~A-~~t~~~l~f~~~~~~~d~~cGp~iD 154 (159)
T PF04862_consen 77 PGSTYTLTFSLARNCAQSESLSVSVGGQ-FSFVVTIQTSYGSGGWDTYSFTFTA-SSTRITLTFHNPGMESDSACGPVID 154 (159)
T ss_pred CCCEEEEEEEecCCCCCCccEEEEEecc-cceEEEeeccCCCCCcEEEEEEEEe-CCCEEEEEEECCCccCCCCceeEEE
Confidence 9999999999982111 22355555432 2222222223345679999999999 448888888654 345556799
Q ss_pred ccccc
Q 008838 151 SVSLQ 155 (551)
Q Consensus 151 dvsl~ 155 (551)
||+|+
T Consensus 155 nV~vk 159 (159)
T PF04862_consen 155 NVSVK 159 (159)
T ss_pred EEEeC
Confidence 99874
No 27
>PLN03089 hypothetical protein; Provisional
Probab=98.11 E-value=4.2e-05 Score=79.38 Aligned_cols=142 Identities=20% Similarity=0.304 Sum_probs=86.9
Q ss_pred cccCCCccCCCCceeeCCCcCCC----------------CCCeeeecceeEEEee---------ccCCceeEEEeeCCCC
Q 008838 10 CLAEPRRAHYGGGLIVNPEFNRG----------------TEGWTAFGQAAIREAT---------SEEGNKYIVAHSRTNP 64 (551)
Q Consensus 10 ~~~~p~~~~~~~~li~n~~FE~g----------------~~gW~~~g~~~~~~~~---------~~~G~~~l~vt~Rt~~ 64 (551)
|......+...+|||+|++||+| +.||.-.|...+..+. ...|.+++.. ++
T Consensus 16 ~~~~~~~~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~~Av~L-G~--- 91 (373)
T PLN03089 16 CAAAASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGAHAVRL-GN--- 91 (373)
T ss_pred HhcccccccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCchhhhc-CC---
Confidence 44444456778999999999976 4567765543332111 2357777765 32
Q ss_pred CCcceeeeeccCCCEEEEEEEEEEcC-CCceEEEEEEeCCCeeEEceeEEEeCCCeEEEEeEEEeCCCCcEEEEEEeCC-
Q 008838 65 LDSFSQKVQLEKGKLYSFSAWIQVSR-GSDTVAAVFKTSDGKLIDAGKVLAKHGCWSLLKGGLAANFTSLVEILFESKN- 142 (551)
Q Consensus 65 w~G~~~~v~l~~G~~Y~~SawVk~~~-gs~~~~~~l~~~~g~~~~~~~~~~~~~~Wt~l~g~~t~~~~~~~~iy~e~~~- 142 (551)
-.+++|.|.+.+|+.|++|.++.-.- ++..+++....+.+... .. ..-.+++|+..+-.|+.... .++|-|+.+.
T Consensus 92 e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~-~q-t~~~~~gw~~~s~~F~A~s~-~t~l~F~~~~~ 168 (373)
T PLN03089 92 EASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPESGVLP-LQ-TLYSSSGWDSYAWAFKAESD-VVNLVFHNPGV 168 (373)
T ss_pred CceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecCCCcEEe-eE-EeccCCCcEEEEEEEEEecc-cEEEEEECccc
Confidence 25689999999999999999998211 12234444333222221 11 12367899999999998664 3555554332
Q ss_pred ---CceeEEEecccccccc
Q 008838 143 ---AEMEIWADSVSLQPFT 158 (551)
Q Consensus 143 ---~~~d~~vDdvsl~~~~ 158 (551)
+..-=.||||+|+.+.
T Consensus 169 ~~D~~CGPviD~VaIk~l~ 187 (373)
T PLN03089 169 EEDPACGPLIDAVAIKTLF 187 (373)
T ss_pred CCCCcccceeeeEEEeecc
Confidence 1111139999998643
No 28
>PLN03089 hypothetical protein; Provisional
Probab=98.06 E-value=7.8e-05 Score=77.42 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=83.2
Q ss_pred cCCCCceeeCCCcCCC-----------------------CCCeeee--cceeEEEe---eccCCceeEEE-eeCCCCCCc
Q 008838 17 AHYGGGLIVNPEFNRG-----------------------TEGWTAF--GQAAIREA---TSEEGNKYIVA-HSRTNPLDS 67 (551)
Q Consensus 17 ~~~~~~li~n~~FE~g-----------------------~~gW~~~--g~~~~~~~---~~~~G~~~l~v-t~Rt~~w~G 67 (551)
....+|||+|++||+| +.||.-- +.....-+ ....|.+++.. ++|. .+
T Consensus 190 ~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h~~vp~G~~aveL~~g~e---~a 266 (373)
T PLN03089 190 RPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAHFSVPEGKRAVELVSGKE---SA 266 (373)
T ss_pred CccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCcccCCCCceEEEeccCCc---ce
Confidence 3356899999999986 2345431 22222111 23479999986 4554 45
Q ss_pred ceeeeeccCCCEEEEEEEEEEcCC--CceEEEEEEeCCCe--eEEceeEEEeCCCeEEEEeEEEeCCC-CcEEE---EEE
Q 008838 68 FSQKVQLEKGKLYSFSAWIQVSRG--SDTVAAVFKTSDGK--LIDAGKVLAKHGCWSLLKGGLAANFT-SLVEI---LFE 139 (551)
Q Consensus 68 ~~~~v~l~~G~~Y~~SawVk~~~g--s~~~~~~l~~~~g~--~~~~~~~~~~~~~Wt~l~g~~t~~~~-~~~~i---y~e 139 (551)
++|.+...+|++|++|..+--..+ ...+.+....+... ..+. ...+|.|++.+-.|+..++ ..+.. |..
T Consensus 267 I~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~---s~g~gg~~~~s~~F~A~s~~Trl~F~s~~y~ 343 (373)
T PLN03089 267 IAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYE---SQGKGGFKRASLRFKAVSNRTRITFYSSFYH 343 (373)
T ss_pred EEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEe---cCCCcceEEEEEEEEeccCCEEEEEEEeecc
Confidence 889999999999999999866542 22344443332221 1111 1224579999999998875 33333 223
Q ss_pred eC-CCceeEE---Eecccccccc
Q 008838 140 SK-NAEMEIW---ADSVSLQPFT 158 (551)
Q Consensus 140 ~~-~~~~d~~---vDdvsl~~~~ 158 (551)
+. +....++ ||||+|.+..
T Consensus 344 ~~~d~~~~~cGPvlDdV~v~~~~ 366 (373)
T PLN03089 344 TKSDDFGSLCGPVVDDVRVVPVR 366 (373)
T ss_pred cccCcCCCcccceeeeEEEEEcc
Confidence 32 2234456 9999998763
No 29
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.85 E-value=0.0013 Score=78.20 Aligned_cols=201 Identities=17% Similarity=0.200 Sum_probs=127.2
Q ss_pred HccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEee-ecCCCCCC--ccccCCCHHHHHHHHHHHH
Q 008838 225 ASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIF-WDNSKQQP--SWVKKLSPEELREAAAKRI 301 (551)
Q Consensus 225 ~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~Lv-W~~~~~~P--~W~~~~~~~~~~~~~~~~i 301 (551)
..+||+++. ..+ ....++++.|.+.||-|---.-+ +|.-.... .|.. +.++..+++.+++
T Consensus 366 ~~g~NavR~--sHy-------------P~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~--~~p~~~~~~~~~~ 428 (1021)
T PRK10340 366 QHNINSVRT--AHY-------------PNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT--DDPQWEKVYVDRI 428 (1021)
T ss_pred HCCCCEEEe--cCC-------------CCCHHHHHHHHHCCCEEEECCcccccCccccccccccc--CCHHHHHHHHHHH
Confidence 358999997 211 12358899999999977543211 12100001 1111 2334566777889
Q ss_pred HHHHHhcCC--ceEEEEeeccccccCccccccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHH
Q 008838 302 NSVTSRYAG--KLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDE 379 (551)
Q Consensus 302 ~~v~~rY~g--~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~ 379 (551)
++++.|++. .|..|-+-||... |.+ ++.+++++|+.||.-.+-+.+ ..
T Consensus 429 ~~mV~RdrNHPSIi~WslGNE~~~--------g~~-~~~~~~~~k~~DptR~v~~~~------~~--------------- 478 (1021)
T PRK10340 429 VRHIHAQKNHPSIIIWSLGNESGY--------GCN-IRAMYHAAKALDDTRLVHYEE------DR--------------- 478 (1021)
T ss_pred HHHHHhCCCCCEEEEEECccCccc--------cHH-HHHHHHHHHHhCCCceEEeCC------Cc---------------
Confidence 999999997 6999999999632 323 478899999999986553321 00
Q ss_pred HhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHhh--CCCCEEEeeecCC--CCcchHHHHHHHHHHHHcCCCeeE
Q 008838 380 ILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGS--TGLPIWLTEVDVD--IGPNQSQYLEEILREAYAHPAVKG 455 (551)
Q Consensus 380 l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~--~glpI~iTEldv~--~~~~QA~~~~~~~~~~~s~p~v~g 455 (551)
.....|.++. + ++.+.. +..++. .++|+.++|..=. ...- -++++..+..+||.+.|
T Consensus 479 ------~~~~~Dv~~~--~----Y~~~~~----~~~~~~~~~~kP~i~~Ey~hamgn~~g---~~~~yw~~~~~~p~l~G 539 (1021)
T PRK10340 479 ------DAEVVDVIST--M----YTRVEL----MNEFGEYPHPKPRILCEYAHAMGNGPG---GLTEYQNVFYKHDCIQG 539 (1021)
T ss_pred ------Cccccceecc--c----cCCHHH----HHHHHhCCCCCcEEEEchHhccCCCCC---CHHHHHHHHHhCCceeE
Confidence 0123577763 1 133333 334443 3699999998522 1111 13455556778999999
Q ss_pred EEEEecccC-------CC------------CC----cc--ccccCCCCCChhHHHHHHHHH
Q 008838 456 IISFSGPAI-------AG------------FK----VM--PLADKDFKNTPAGDVVDKLLA 491 (551)
Q Consensus 456 i~~Wg~~d~-------~g------------~~----~~--~L~d~d~~pKPa~~~~~~l~~ 491 (551)
-++|.+.|- .| .+ .. ||++.|.+|||++..++.+.+
T Consensus 540 gfiW~~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 540 HYVWEWCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred EeeeecCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCCChhHHHHHHhcc
Confidence 999998772 11 01 12 899999999999999988765
No 30
>PLN03059 beta-galactosidase; Provisional
Probab=97.59 E-value=0.00065 Score=77.22 Aligned_cols=148 Identities=13% Similarity=0.160 Sum_probs=109.8
Q ss_pred CceEEeecCCCCCChHHHHHH----HccCceeeeCCCCCCccccccCCccchhh---hHHHHHHHHHCCceEE--EeEee
Q 008838 204 FPFGCGMNNYILTSTEYQNWF----ASRFKYTTFTNQMKWYSTEKIQGEENYTI---ADAMLQFCEKNGISVR--GHNIF 274 (551)
Q Consensus 204 F~fG~a~~~~~~~~~~~~~~~----~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~---~D~~v~~a~~~gi~vr--GH~Lv 274 (551)
+.+..++|...+..+.+++.+ ..+||.|.. =..|..-||++|+|+|+. ..++++.|++.||-|. -.+-+
T Consensus 45 ~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~t--YV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYI 122 (840)
T PLN03059 45 ILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT--YVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYI 122 (840)
T ss_pred EEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEE--EecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcce
Confidence 567888888776655555555 358999887 688999999999999975 4689999999999763 22322
Q ss_pred ---ecCCCCCCccccCC-------CHHHHHHHHHHHHHHHHHhc---------CCceEEEEeeccccccCcccc--ccch
Q 008838 275 ---WDNSKQQPSWVKKL-------SPEELREAAAKRINSVTSRY---------AGKLIAWDVVNENLHFRFFED--NLGE 333 (551)
Q Consensus 275 ---W~~~~~~P~W~~~~-------~~~~~~~~~~~~i~~v~~rY---------~g~i~~WDVvNE~~~~~~~~~--~~g~ 333 (551)
|.. ...|.|+... +.+..++++++|+..++.+. +|-|....|=||-. ++... .-+.
T Consensus 123 cAEw~~-GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG--s~~~~~~~~d~ 199 (840)
T PLN03059 123 CAEWNF-GGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG--PVEWEIGAPGK 199 (840)
T ss_pred eeeecC-CCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc--ceecccCcchH
Confidence 543 3689998642 34567788888888887765 36799999999953 22211 1235
Q ss_pred HHHHHHHHHHhccCCCceEEEec
Q 008838 334 NASAEFYRIAHQLDPNTIMFLNE 356 (551)
Q Consensus 334 d~~~~af~~Ar~~dP~a~L~~Nd 356 (551)
+|++..-+.|++..-++.|+..|
T Consensus 200 ~Yl~~l~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 200 AYTKWAADMAVKLGTGVPWVMCK 222 (840)
T ss_pred HHHHHHHHHHHHcCCCcceEECC
Confidence 79999999999998888888876
No 31
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.45 E-value=0.00015 Score=60.26 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=31.9
Q ss_pred HHHhcCC--ceEEEEeecc-ccccC-----ccccccc---hHHHHHHHHHHhccCCCceEEEec
Q 008838 304 VTSRYAG--KLIAWDVVNE-NLHFR-----FFEDNLG---ENASAEFYRIAHQLDPNTIMFLNE 356 (551)
Q Consensus 304 v~~rY~g--~i~~WDVvNE-~~~~~-----~~~~~~g---~d~~~~af~~Ar~~dP~a~L~~Nd 356 (551)
++++|+. +|.+|||+|| |.... .+.+... .++++++|+++|++||+..|..+-
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~ 64 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF 64 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 4677765 8999999999 54111 1111111 256789999999999999998753
No 32
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.42 E-value=0.021 Score=62.56 Aligned_cols=259 Identities=14% Similarity=0.127 Sum_probs=138.0
Q ss_pred HHHHHHHC--CceEEEeEeeecCCCCCCccccCC------------CHHHHHHHHHHHHHHHHHhcCC---ceEEEEeec
Q 008838 257 MLQFCEKN--GISVRGHNIFWDNSKQQPSWVKKL------------SPEELREAAAKRINSVTSRYAG---KLIAWDVVN 319 (551)
Q Consensus 257 ~v~~a~~~--gi~vrGH~LvW~~~~~~P~W~~~~------------~~~~~~~~~~~~i~~v~~rY~g---~i~~WDVvN 319 (551)
+|+.|.+. +|++-+ --|. .|.|++.- ..++..+++.+|..+.++.|+. .|.+--+-|
T Consensus 158 ~ik~a~~~~~~lki~a--SpWS----pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QN 231 (496)
T PF02055_consen 158 LIKEALAINPNLKIFA--SPWS----PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQN 231 (496)
T ss_dssp HHHHHHHHHTT-EEEE--EES-------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSS
T ss_pred HHHHHHHhCCCcEEEE--ecCC----CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccC
Confidence 55555443 456644 3474 58999752 1235667788888888888875 588999999
Q ss_pred cccccC----ccccc-cc----hHHHHHHHH-HHhccCC--CceEEEecCCccccchhhhhhHHHHHHHH-HHHhcCCCC
Q 008838 320 ENLHFR----FFEDN-LG----ENASAEFYR-IAHQLDP--NTIMFLNEYNTIELAADKESNAVNYKKKI-DEILSYPGN 386 (551)
Q Consensus 320 E~~~~~----~~~~~-~g----~d~~~~af~-~Ar~~dP--~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~ 386 (551)
||.... .|... .. .++++..+. ..++..+ ++||++.|-|-... ..|...+ .+-. +
T Consensus 232 EP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~--------~~~~~~il~d~~----A 299 (496)
T PF02055_consen 232 EPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNL--------PDYADTILNDPE----A 299 (496)
T ss_dssp SCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGT--------THHHHHHHTSHH----H
T ss_pred CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCccc--------chhhhhhhcChh----h
Confidence 998632 23221 11 245554333 5566767 89999987552111 2343332 2111 1
Q ss_pred CCcccEEEecccCCCCCCCHHHHHHHHHHHhh--CCCCEEEeeecCCCC----------cchHHHHHHHHHHHHcCCCee
Q 008838 387 AGMSLGIGLQGHFSSDQPDIAYMRSVLDILGS--TGLPIWLTEVDVDIG----------PNQSQYLEEILREAYAHPAVK 454 (551)
Q Consensus 387 g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~--~glpI~iTEldv~~~----------~~QA~~~~~~~~~~~s~p~v~ 454 (551)
..-+||||+|.+.+. +.. ..|++... .++.|+.||--.... -..++.+...+-..+.| ++.
T Consensus 300 ~~yv~GiA~HwY~g~--~~~----~~l~~~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn-~~~ 372 (496)
T PF02055_consen 300 AKYVDGIAFHWYGGD--PSP----QALDQVHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNN-WVS 372 (496)
T ss_dssp HTTEEEEEEEETTCS---HC----HHHHHHHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHT-TEE
T ss_pred HhheeEEEEECCCCC--chh----hHHHHHHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHh-hce
Confidence 335899999776553 211 34555543 478999999765331 12344444433345566 799
Q ss_pred EEEEEecc-cCCC--------CCccccccC---CCCCChhHHHHHHHHHHhcc--CceeeeeCC-CceEEEeeee---ee
Q 008838 455 GIISFSGP-AIAG--------FKVMPLADK---DFKNTPAGDVVDKLLAEWKS--RALEATTDM-KGFFEFSLFH---GE 516 (551)
Q Consensus 455 gi~~Wg~~-d~~g--------~~~~~L~d~---d~~pKPa~~~~~~l~~~w~t--~~~~~~td~-~G~~~~~~f~---G~ 516 (551)
|.+.|++. |..| ...+.+.|. .+...|.|.++-.+-+=-.. .......+. ++.+..-+|. |.
T Consensus 373 gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nPDGs 452 (496)
T PF02055_consen 373 GWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNPDGS 452 (496)
T ss_dssp EEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEETTSE
T ss_pred eeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECCCCC
Confidence 99999984 3322 123344554 34558999988765431111 112222222 2234445554 87
Q ss_pred EEEEEEeccceeEEEEEEEecCCCC
Q 008838 517 YNLTVKHSVTHALTSISFKVTKHLP 541 (551)
Q Consensus 517 y~v~v~~~~~~~~~~~~~~~~~~~~ 541 (551)
..| |-.......+.++|.+.....
T Consensus 453 ~vv-Vv~N~~~~~~~~~v~v~~~~~ 476 (496)
T PF02055_consen 453 IVV-VVLNRGDSDQNFSVTVKDGSK 476 (496)
T ss_dssp EEE-EEEE-SSS-EEEEEEEECTTT
T ss_pred EEE-EEEcCCCCccceEEEEecCCc
Confidence 755 444433445667777776554
No 33
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=97.18 E-value=0.044 Score=65.39 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=127.1
Q ss_pred HccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeee-cCCCCCCc-cccCCCHHHHHHHHHHHHH
Q 008838 225 ASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFW-DNSKQQPS-WVKKLSPEELREAAAKRIN 302 (551)
Q Consensus 225 ~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW-~~~~~~P~-W~~~~~~~~~~~~~~~~i~ 302 (551)
..+||+++. ..+. ...++++.|.+.||-|---.-++ |.- .|. ++. +.++..+.+.++++
T Consensus 382 ~~g~NaVR~--sHyP-------------~~p~fydlcDe~GilV~dE~~~e~hg~--~~~~~~~--~dp~~~~~~~~~~~ 442 (1027)
T PRK09525 382 QHNFNAVRC--SHYP-------------NHPLWYELCDRYGLYVVDEANIETHGM--VPMNRLS--DDPRWLPAMSERVT 442 (1027)
T ss_pred HCCCCEEEe--cCCC-------------CCHHHHHHHHHcCCEEEEecCccccCC--ccccCCC--CCHHHHHHHHHHHH
Confidence 358999998 2111 23588999999999774332221 110 111 111 22345677888899
Q ss_pred HHHHhcCC--ceEEEEeeccccccCccccccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHH
Q 008838 303 SVTSRYAG--KLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEI 380 (551)
Q Consensus 303 ~v~~rY~g--~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l 380 (551)
+++.|++. .|..|-+-||.-. | ...+.+++++|+.||.-.+-+..-. .+ ..+.+.+-.+
T Consensus 443 ~mV~RdrNHPSIi~WSlgNE~~~--------g-~~~~~l~~~~k~~DptRpV~y~~~~-----~~-----~~~~Dv~~~m 503 (1027)
T PRK09525 443 RMVQRDRNHPSIIIWSLGNESGH--------G-ANHDALYRWIKSNDPSRPVQYEGGG-----AD-----TAATDIICPM 503 (1027)
T ss_pred HHHHhCCCCCEEEEEeCccCCCc--------C-hhHHHHHHHHHhhCCCCcEEECCCC-----CC-----CCccccccCC
Confidence 99999997 6999999999632 1 2356788999999998666554210 00 0011111000
Q ss_pred hcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHhhC---CCCEEEeeecCCCCcchHHHHHHHHHHHHcCCCeeEEE
Q 008838 381 LSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGST---GLPIWLTEVDVDIGPNQSQYLEEILREAYAHPAVKGII 457 (551)
Q Consensus 381 ~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~~---glpI~iTEldv~~~~~QA~~~~~~~~~~~s~p~v~gi~ 457 (551)
.. .+++ .+.. +... ...|+.+... ++|+.++|+.=.-+. .--.++++..++.++|.+.|=+
T Consensus 504 y~------~~~~--~~~~-----~~~~--~~~~~~~~~~~~~~kP~i~cEY~Hamgn-~~g~l~~yw~~~~~~~~~~Ggf 567 (1027)
T PRK09525 504 YA------RVDE--DQPF-----PAVP--KWSIKKWISLPGETRPLILCEYAHAMGN-SLGGFAKYWQAFRQYPRLQGGF 567 (1027)
T ss_pred CC------Cccc--cccc-----cccc--hHHHHHHHhcCCCCCCEEEEechhcccC-cCccHHHHHHHHhcCCCeeEEe
Confidence 00 0110 0000 0000 1234444433 699999998621111 1114677777778999999999
Q ss_pred EEecccC-------CC---------C---C------ccccccCCCCCChhHHHHHHHHH
Q 008838 458 SFSGPAI-------AG---------F---K------VMPLADKDFKNTPAGDVVDKLLA 491 (551)
Q Consensus 458 ~Wg~~d~-------~g---------~---~------~~~L~d~d~~pKPa~~~~~~l~~ 491 (551)
+|.+.|- .| + + .=||+..|.+|+|++.-++++++
T Consensus 568 IW~w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p~p~~~E~K~v~q 626 (1027)
T PRK09525 568 IWDWVDQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTPHPALYEAKHAQQ 626 (1027)
T ss_pred eEeccCcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCCCccHHHHHhhcC
Confidence 9998542 11 0 0 12899999999999999998875
No 34
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.08 E-value=0.03 Score=58.55 Aligned_cols=217 Identities=16% Similarity=0.176 Sum_probs=103.8
Q ss_pred cccccCCccchhhh---HHHHHHHHHCCceEEEeEeeecCCCCCCccccCC------------CHHHHHHHHHHHHHHHH
Q 008838 241 STEKIQGEENYTIA---DAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL------------SPEELREAAAKRINSVT 305 (551)
Q Consensus 241 ~~Ep~~G~~~~~~~---D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~------------~~~~~~~~~~~~i~~v~ 305 (551)
...+..|.|+|+.- -.+++.|+++|+.. .+...+. .|-|+..- -.++-.+.+.+|+.+|+
T Consensus 90 ~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~---f~aFSNS--PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv 164 (384)
T PF14587_consen 90 SFLPADGSYDWDADAGQRWFLKAAKERGVNI---FEAFSNS--PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVV 164 (384)
T ss_dssp -SB-TTS-B-TTSSHHHHHHHHHHHHTT------EEEE-SS--S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHH
T ss_pred cccCCCCCcCCCCCHHHHHHHHHHHHcCCCe---EEEeecC--CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHH
Confidence 34577899999752 35888999999985 2333221 34555421 12345778889999999
Q ss_pred HhcCC---ceEEEEeeccccccCcccc--ccc--------hHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHH
Q 008838 306 SRYAG---KLIAWDVVNENLHFRFFED--NLG--------ENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVN 372 (551)
Q Consensus 306 ~rY~g---~i~~WDVvNE~~~~~~~~~--~~g--------~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 372 (551)
.+|+. .|.+-+-+|||.. .|.. .-| .+.++...+..++...++++.+.|-..++.-.........
T Consensus 165 ~~~~~~GI~f~~IsP~NEP~~--~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~ 242 (384)
T PF14587_consen 165 KHYKKWGINFDYISPFNEPQW--NWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWG 242 (384)
T ss_dssp HHHHCTT--EEEEE--S-TTS---GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS
T ss_pred HHHHhcCCccceeCCcCCCCC--CCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchh
Confidence 99854 6999999999974 2521 111 1345555666677788999999875554332211000001
Q ss_pred HHHHHHHHhc-----CCCCCCc-ccEEEecccCCCCCC-CHHHHHHHHHH-HhhC--CCCEEEeeecCCCC---------
Q 008838 373 YKKKIDEILS-----YPGNAGM-SLGIGLQGHFSSDQP-DIAYMRSVLDI-LGST--GLPIWLTEVDVDIG--------- 433 (551)
Q Consensus 373 ~~~~l~~l~~-----~~~~g~~-iDgIG~Q~H~~~~~p-~~~~i~~~L~~-~a~~--glpI~iTEldv~~~--------- 433 (551)
.-..|+.+-. +.++=.. ...|.-|+++..... .+..+|+.|.. +.+. |+++|-||+-+-..
T Consensus 243 r~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~~~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~~~~~~~~~~g 322 (384)
T PF14587_consen 243 RGNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDSPWDDLRDIRKQLADKLDKYSPGLKYWQTEYCILGDNYEIIEGGG 322 (384)
T ss_dssp ---HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SSSHHHHHHHHHHHHHHHHTTSS--EEEE----S----TTT-SSS-
T ss_pred hhhhHHhhcCCCchhhhhccccchhheeecccccCCCHHHHHHHHHHHHHHHHhhCcCCceeeeeeeeccCCcccccCCC
Confidence 1223344433 1111111 367788777765311 23345555544 3445 89999999987642
Q ss_pred c------chHHHHHHHHHHHHcCCCeeEEEEEecccC
Q 008838 434 P------NQSQYLEEILREAYAHPAVKGIISFSGPAI 464 (551)
Q Consensus 434 ~------~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~ 464 (551)
. .=|-|+.+++-.=+.+.++.+-.||....+
T Consensus 323 ~~~~~~m~~aLy~arviH~DL~~anassW~wW~a~~~ 359 (384)
T PF14587_consen 323 YDRDLGMDTALYVARVIHNDLTYANASSWQWWTAISP 359 (384)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTS--SEEEEEESEES
T ss_pred cccchhHHHHHHHHHHHHhhhhhcccchhHHHHHhcc
Confidence 0 125566777666566788999999987644
No 35
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.062 Score=58.15 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=71.1
Q ss_pred HHHc-cCceeeeCCCCCCccccccC---Cccchhhh---HHHHHHHHHCCceEEEeEeeecCCCCCCccccCC----CHH
Q 008838 223 WFAS-RFKYTTFTNQMKWYSTEKIQ---GEENYTIA---DAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL----SPE 291 (551)
Q Consensus 223 ~~~~-~Fn~~t~eN~~kW~~~Ep~~---G~~~~~~~---D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~----~~~ 291 (551)
++++ ++++-++ .+.|..|-|.- +..|-... -.+++-..+|||++. +-++|-. +|.++... -.+
T Consensus 99 Lmk~lgv~afRF--SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~--VTLfHwD--lPq~LeDeYgGwLn~ 172 (524)
T KOG0626|consen 99 LMKELGVDAFRF--SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPF--VTLFHWD--LPQALEDEYGGWLNP 172 (524)
T ss_pred HHHHcCCCeEEE--EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEE--EEEecCC--CCHHHHHHhccccCH
Confidence 4433 6888888 79999999863 23454443 478999999999985 3344533 89888752 223
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeeccccc
Q 008838 292 ELREAAAKRINSVTSRYAGKLIAWDVVNENLH 323 (551)
Q Consensus 292 ~~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~ 323 (551)
+..+.+.+|.+-+.++|+++|..|=-.|||..
T Consensus 173 ~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v 204 (524)
T KOG0626|consen 173 EIVEDFRDYADLCFQEFGDRVKHWITFNEPNV 204 (524)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeEEecccce
Confidence 55667899999999999999999999999973
No 36
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.003 Score=70.73 Aligned_cols=117 Identities=19% Similarity=0.299 Sum_probs=84.9
Q ss_pred cCCCceEEeecCCCCCChH----HHHHHHccCceeeeCCCCCCccccccCCccchhhhHHH-HHHHHHCCceEEEeEeee
Q 008838 201 KSDFPFGCGMNNYILTSTE----YQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAM-LQFCEKNGISVRGHNIFW 275 (551)
Q Consensus 201 ~~~F~fG~a~~~~~~~~~~----~~~~~~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~-v~~a~~~gi~vrGH~LvW 275 (551)
+.-+.+|.++++...+... .+.+-..+||.++.+ .+-|..+||++|+|+|+..|.. ++.|.+.|+.|.--+
T Consensus 13 ~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig-~faW~~~eP~eG~fdf~~~D~~~l~~a~~~Gl~vil~t--- 88 (673)
T COG1874 13 RRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIG-YFAWNLHEPEEGKFDFTWLDEIFLERAYKAGLYVILRT--- 88 (673)
T ss_pred ceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEee-eEEeeccCccccccCcccchHHHHHHHHhcCceEEEec---
Confidence 3346789999998776533 333345689999984 7999999999999999999998 999999999884322
Q ss_pred cCCCCCCccccCC------------------------CHHHHHHHHHHHHHHHHHh-cCC--ceEEEEeeccc
Q 008838 276 DNSKQQPSWVKKL------------------------SPEELREAAAKRINSVTSR-YAG--KLIAWDVVNEN 321 (551)
Q Consensus 276 ~~~~~~P~W~~~~------------------------~~~~~~~~~~~~i~~v~~r-Y~g--~i~~WDVvNE~ 321 (551)
+.....|.|+... +-.-.++.+...++.++.| |+. -|..|.+=||-
T Consensus 89 ~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY 161 (673)
T COG1874 89 GPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEY 161 (673)
T ss_pred CCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCcc
Confidence 1112456666431 0113566666677778888 864 69999999984
No 37
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=96.44 E-value=0.1 Score=47.78 Aligned_cols=127 Identities=17% Similarity=0.262 Sum_probs=78.1
Q ss_pred CcCCCCCCeeeecceeE----EE------------eeccCCceeEEEeeCCCCCCcceeee---eccCC-CEEEEEEEEE
Q 008838 28 EFNRGTEGWTAFGQAAI----RE------------ATSEEGNKYIVAHSRTNPLDSFSQKV---QLEKG-KLYSFSAWIQ 87 (551)
Q Consensus 28 ~FE~g~~gW~~~g~~~~----~~------------~~~~~G~~~l~vt~Rt~~w~G~~~~v---~l~~G-~~Y~~SawVk 87 (551)
+||+|+.||.......+ .. +....+.++|.+...... .|-.-.| .|.+- ....|+.|-.
T Consensus 2 ~Fe~~~Cgw~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~G~yl~~~~s~~~-~~~~A~L~SP~~~~~~~~~Cl~F~y~ 80 (157)
T cd06263 2 DFEDGLCGWTQDSTDDFDWTRVSGSTPSPGTPPDHTHGTGSGHYLYVESSSGR-EGQKARLLSPLLPPPRSSHCLSFWYH 80 (157)
T ss_pred CCCCCccCCEECCCCCCCEEECcCcCCCCCCCCCcccCCCccEEEEEECCCCC-CCCEEEEEcccCcCCCCCeEEEEEEE
Confidence 79999999988643211 00 011234578877644332 3322222 44443 5677999998
Q ss_pred EcCC-CceEEEEEEeCCC-eeEEceeEEEe-CCCeEEEEeEEEeCCCCcEEEEEEeC---CCceeEEEecccccc
Q 008838 88 VSRG-SDTVAAVFKTSDG-KLIDAGKVLAK-HGCWSLLKGGLAANFTSLVEILFESK---NAEMEIWADSVSLQP 156 (551)
Q Consensus 88 ~~~g-s~~~~~~l~~~~g-~~~~~~~~~~~-~~~Wt~l~g~~t~~~~~~~~iy~e~~---~~~~d~~vDdvsl~~ 156 (551)
..+. ...++|.++..++ ....+-+.... .+.|.+.+-.+.... ...+|.||+. ....++-||||+|.+
T Consensus 81 ~~g~~~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~-~~fqi~fe~~~~~~~~g~IAIDdI~l~~ 154 (157)
T cd06263 81 MYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASS-KPFQVVFEGVRGSGSRGDIALDDISLSP 154 (157)
T ss_pred ecCCCCCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCC-CceEEEEEEEECCCccccEEEeEEEEec
Confidence 8864 5678888877655 22222222222 578988777665543 6788888863 356899999999975
No 38
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=96.16 E-value=0.17 Score=46.77 Aligned_cols=129 Identities=16% Similarity=0.279 Sum_probs=75.2
Q ss_pred CCCcCCC-CCCeeeeccee----E-EEe-------eccC-C-ceeEEEeeCCCCCCcceeee---eccCC-CEEEEEEEE
Q 008838 26 NPEFNRG-TEGWTAFGQAA----I-REA-------TSEE-G-NKYIVAHSRTNPLDSFSQKV---QLEKG-KLYSFSAWI 86 (551)
Q Consensus 26 n~~FE~g-~~gW~~~g~~~----~-~~~-------~~~~-G-~~~l~vt~Rt~~w~G~~~~v---~l~~G-~~Y~~SawV 86 (551)
+-+||.| +.||....... . ... ..|. | .++|.+..+... .|-.-.| .+.+- ..+.|+.|-
T Consensus 5 ~CdFE~~~~CgW~~~~~~~~~W~~~~g~~~~tgP~~dht~~~G~y~~v~~~~~~-~g~~A~L~SP~~~~~~~~~cl~F~Y 83 (161)
T smart00137 5 NCDFEEGSTCGWHQDSNDDGHWERVSSATGIPGPNRDHTTGNGHFMFFETSSGA-PGQTARLLSPPLYENRSTHCLTFWY 83 (161)
T ss_pred CCCCCcCCcCCCEECCCCCCcEEEeecCCCCCCCCCCcCCCceeEEEEECCCCC-CCCEEEEECCcccCCCCCeEEEEEE
Confidence 6799999 99998743211 1 100 1122 3 378888665432 2322222 33332 468899998
Q ss_pred EEcCC-CceEEEEEEeCCCee-EEceeEEE-eCCCeEEEEeEEEeCCCCcEEEEEEeC---CCceeEEEecccccc
Q 008838 87 QVSRG-SDTVAAVFKTSDGKL-IDAGKVLA-KHGCWSLLKGGLAANFTSLVEILFESK---NAEMEIWADSVSLQP 156 (551)
Q Consensus 87 k~~~g-s~~~~~~l~~~~g~~-~~~~~~~~-~~~~Wt~l~g~~t~~~~~~~~iy~e~~---~~~~d~~vDdvsl~~ 156 (551)
...+. ...++|.++..+++. ..+-+... ..+.|.+-+-.+.. .....+|.||+- ....++-||||+|.+
T Consensus 84 ~m~G~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~-~~~~fqi~fe~~~g~~~~g~IAiDDI~i~~ 158 (161)
T smart00137 84 YMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSK-WQQPFQVVFEGTRGKGHSGYIALDDILLSN 158 (161)
T ss_pred EecCCCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecC-CCCcEEEEEEEEEcCCccceEEEeEEEeec
Confidence 88754 345777776544432 22222211 24679776655443 346788888863 356899999999974
No 39
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=95.97 E-value=0.16 Score=45.96 Aligned_cols=127 Identities=19% Similarity=0.294 Sum_probs=61.2
Q ss_pred CcCCCCCCeeeeccee----EEEe----------ecc----CCceeEEEeeCCCCCCcceeee---eccCCCEEEEEEEE
Q 008838 28 EFNRGTEGWTAFGQAA----IREA----------TSE----EGNKYIVAHSRTNPLDSFSQKV---QLEKGKLYSFSAWI 86 (551)
Q Consensus 28 ~FE~g~~gW~~~g~~~----~~~~----------~~~----~G~~~l~vt~Rt~~w~G~~~~v---~l~~G~~Y~~SawV 86 (551)
+||+++.||....... .... ..+ .+.++|.+..... -.+..-.| .+.+...+.|+.|.
T Consensus 2 ~Fe~~~C~w~~~~~~~~~W~~~~~~~~~~~~~p~~d~t~~~~~G~yl~~~~~~~-~~~~~a~L~Sp~~~~~~~~cl~F~y 80 (160)
T PF00629_consen 2 DFEEGLCGWTQDSNDSFDWQRGSGSSPSSNTGPSSDHTGGTSSGHYLYVDSSSG-SPGDSARLISPVFPASGNSCLSFWY 80 (160)
T ss_dssp -SSS-GGT-EE-TTSS---EEEETTTS-----TT--S------SEEEEEE-TT---TT-EEEEEEEEE--SS--EEEEEE
T ss_pred cCCCCCCCcEECCCCCCceEEEeCcccccCccccceeeccccceeEEEEeeccc-ccCceEeeccccccccccceeEEEE
Confidence 7999988998855421 1100 012 1257777755433 22222222 55666688899999
Q ss_pred EEcCCC-ceEEEEEEeCC-CeeEEcee-EEEeCCCeEEEEeEEEeCCCCcEEEEEEeC---CCceeEEEecccccc
Q 008838 87 QVSRGS-DTVAAVFKTSD-GKLIDAGK-VLAKHGCWSLLKGGLAANFTSLVEILFESK---NAEMEIWADSVSLQP 156 (551)
Q Consensus 87 k~~~gs-~~~~~~l~~~~-g~~~~~~~-~~~~~~~Wt~l~g~~t~~~~~~~~iy~e~~---~~~~d~~vDdvsl~~ 156 (551)
...+.+ ..++|.+.... +....+.. .....+.|.+..-.+... ....+|.||+- .....+-||||+|.+
T Consensus 81 ~~~g~~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~-~~~~~i~f~~~~~~~~~~~iaiDdi~~~~ 155 (160)
T PF00629_consen 81 YMYGSSVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPI-SSPFQIIFEAIRGSSYRGDIAIDDISLSP 155 (160)
T ss_dssp EEE-SSSEEEEEEEEETT----S-SEEE-----SSEEEEEEEE----TS-EEEEEEEEE--SS--EEEEEEEEEES
T ss_pred eeccccceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccc-cccceEEEEEEEcCCCceEEEEEEEEEeC
Confidence 987653 45777777652 22111221 223468899777766654 56777777752 345899999999974
No 40
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.
Probab=95.81 E-value=0.092 Score=49.59 Aligned_cols=129 Identities=10% Similarity=0.155 Sum_probs=60.2
Q ss_pred CCcCCCC------CCeeeecc--eeEEEe-eccCCceeEEEeeCCCCCCcceeee--eccC---CCEEEEEEEEEEcCCC
Q 008838 27 PEFNRGT------EGWTAFGQ--AAIREA-TSEEGNKYIVAHSRTNPLDSFSQKV--QLEK---GKLYSFSAWIQVSRGS 92 (551)
Q Consensus 27 ~~FE~g~------~gW~~~g~--~~~~~~-~~~~G~~~l~vt~Rt~~w~G~~~~v--~l~~---G~~Y~~SawVk~~~gs 92 (551)
.+||++. ..|..... ..+..+ ....|.+.|.++.. ..+.|....+ .|.+ -.---|+.|+|..++.
T Consensus 8 DDFE~~~~~~~l~~~w~s~~~~~~~~~~~~~~~~~~~~l~~~y~-~~~~~~~~~v~~~l~~~DwS~~~gl~Fw~k~dgs~ 86 (178)
T PF03425_consen 8 DDFEDYDGDNALQGAWYSYNDDGPGLSLTISDPDGGKALAISYD-GGGSGGWAGVTKDLDPGDWSGYGGLSFWIKGDGSG 86 (178)
T ss_dssp E-SSSS----------EEEEETT-EEEEEEEE-SSSEEEEEEEE---SS-EEEEE-EE-S----TT--EEEEEEEE----
T ss_pred EcccCCCCccceeeeeeccCCCCceeEEEeeCCCCCcEEEEEEe-cCCCCceEEEecCCCcCCcccCCcEEEEEEcCCCC
Confidence 4899762 24876432 233332 23567888988777 4444444444 2222 2345799999988444
Q ss_pred ceEEEEEEeCC-CeeEEceeEEEeCCCeEEEEeEE---Ee------CC-C--------C--cEEEEEEeCCCceeEEEec
Q 008838 93 DTVAAVFKTSD-GKLIDAGKVLAKHGCWSLLKGGL---AA------NF-T--------S--LVEILFESKNAEMEIWADS 151 (551)
Q Consensus 93 ~~~~~~l~~~~-g~~~~~~~~~~~~~~Wt~l~g~~---t~------~~-~--------~--~~~iy~e~~~~~~d~~vDd 151 (551)
..|+|.+.+.. ++ .....+.+... |++++-.| +. .. . . .+.+|+-+.....+|+|||
T Consensus 87 ~~l~vqi~d~~~~e-~~~~~~~~~~~-W~~V~IPF~~f~~~~~~~p~g~~~~~~ldl~~v~~~~~~~~~~~~~~~~~iDd 164 (178)
T PF03425_consen 87 NKLRVQIKDGGDYE-YWEASFTDSST-WKTVEIPFSDFTQRPDYQPGGWGADGTLDLTNVWEFAFYVNGGGGAGTFYIDD 164 (178)
T ss_dssp --EEEEEEEE-EEE-EEEEEE---SS--EEEEEEGGG-EE--S---TT----SS--TTSEEEEEEEESSS---EEEEEEE
T ss_pred cEEEEEEecCCcce-eeEeecCCCCc-CEEEEEEHHHcccccccCCCCCCcccccChHHcEEEEEEEcCCCceeEEEEEe
Confidence 55777776644 22 22334555455 99988644 43 11 0 1 2445655433338999999
Q ss_pred ccccccc
Q 008838 152 VSLQPFT 158 (551)
Q Consensus 152 vsl~~~~ 158 (551)
|.+.+.+
T Consensus 165 I~l~~~~ 171 (178)
T PF03425_consen 165 IRLYGAA 171 (178)
T ss_dssp EEEE-B-
T ss_pred EEEEeCc
Confidence 9998653
No 41
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.21 E-value=0.056 Score=56.46 Aligned_cols=232 Identities=19% Similarity=0.216 Sum_probs=137.8
Q ss_pred cCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeeecCCCCC-CccccCC-CHHHHHHHHHHHHHHH
Q 008838 227 RFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQ-PSWVKKL-SPEELREAAAKRINSV 304 (551)
Q Consensus 227 ~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~-P~W~~~~-~~~~~~~~~~~~i~~v 304 (551)
+||.++.- --|...+. .=-|+|+..|++++...+.|+++----|.|+.-+.. ..|=... ++-...+.+..+|..+
T Consensus 18 ~v~yi~~~--~v~h~~~q-~~~~~~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~~fl~h~ 94 (428)
T COG3664 18 QVNYIRRH--GVWHVNAQ-KLFYPFTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIAAFLKHV 94 (428)
T ss_pred ceeeehhc--ceeeeeec-cccCChHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHHHHHHHH
Confidence 46666442 22332222 456788999999999999887664444677754211 1354333 3335788899999999
Q ss_pred HHhcCCc---eEEEEeeccccccCccccccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHh
Q 008838 305 TSRYAGK---LIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEIL 381 (551)
Q Consensus 305 ~~rY~g~---i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~ 381 (551)
+.||+-+ .-...++|||..- .--++|.+.-+..||+.+|...|-=- .++ + ....+.+
T Consensus 95 ~~~vg~e~v~kw~f~~~~~pn~~-----ad~~eyfk~y~~~a~~~~p~i~vg~~-w~~-e-------~l~~~~k------ 154 (428)
T COG3664 95 IRRVGVEFVRKWPFYSPNEPNLL-----ADKQEYFKLYDATARQRAPSIQVGGS-WNT-E-------RLHEFLK------ 154 (428)
T ss_pred HHHhChhheeecceeecCCCCcc-----cchHHHHHHHHhhhhccCcceeeccc-cCc-H-------HHhhhhh------
Confidence 9999842 3346889998642 12247888888899999998887520 110 0 0111211
Q ss_pred cCCCCCCcccEEEecc------cCCC-CC---------CCHHHHHHHHHHHh--hCCCCEEEeeecCCCCc--------c
Q 008838 382 SYPGNAGMSLGIGLQG------HFSS-DQ---------PDIAYMRSVLDILG--STGLPIWLTEVDVDIGP--------N 435 (551)
Q Consensus 382 ~~~~~g~~iDgIG~Q~------H~~~-~~---------p~~~~i~~~L~~~a--~~glpI~iTEldv~~~~--------~ 435 (551)
.+.+||-+-... |+.. +. ..++.++...+++. .+|+|..+||......+ .
T Consensus 155 ----~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt~~~~~~n~sy~ 230 (428)
T COG3664 155 ----KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLTGPREPTNGSYV 230 (428)
T ss_pred ----ccCcccceeecccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHHhccCCCcceeecccccCCCccccCceee
Confidence 122333333321 1111 00 11234455555554 35779999998766532 2
Q ss_pred hHHHHHHHHHHHHcCCCeeEEEEEecccCC---CC------CccccccCCCCCChhHHHHH
Q 008838 436 QSQYLEEILREAYAHPAVKGIISFSGPAIA---GF------KVMPLADKDFKNTPAGDVVD 487 (551)
Q Consensus 436 QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~---g~------~~~~L~d~d~~pKPa~~~~~ 487 (551)
.|.++-+.|+.+- +-|.++..|+..|.. |. ..++|++.-.-.||||-+..
T Consensus 231 raa~i~~~Lr~~g--~~v~a~~yW~~sdl~e~~g~~~~~~~~gfel~~~~~~rrpa~~~~l 289 (428)
T COG3664 231 RAAYIMRLLREAG--SPVDAFGYWTNSDLHEEHGPPEAPFVGGFELFAPYGGRRPAWMAAL 289 (428)
T ss_pred hHHHHHHHHHhcC--ChhhhhhhhhcccccccCCCcccccccceeeecccccchhHHHHHH
Confidence 3556555555443 469999999987643 21 24688888888999987653
No 42
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.031 Score=59.20 Aligned_cols=222 Identities=16% Similarity=0.157 Sum_probs=140.7
Q ss_pred chhhhHHHHHHHHHCCceEEEeEee-ecCCC---CCCccccCCCH------HHHHHHHHHHHHHHHHhcCC--ceEEEEe
Q 008838 250 NYTIADAMLQFCEKNGISVRGHNIF-WDNSK---QQPSWVKKLSP------EELREAAAKRINSVTSRYAG--KLIAWDV 317 (551)
Q Consensus 250 ~~~~~D~~v~~a~~~gi~vrGH~Lv-W~~~~---~~P~W~~~~~~------~~~~~~~~~~i~~v~~rY~g--~i~~WDV 317 (551)
++..++.+++-|..++|++.--.++ |..-. +.=.|+-..+| +..+...++||+.++.-|+- -|-.|..
T Consensus 65 ~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l 144 (587)
T COG3934 65 NVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWAL 144 (587)
T ss_pred cHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHh
Confidence 4667899999999999998643333 32211 12346633222 34566679999999998885 5889999
Q ss_pred eccccccCccccccch---HHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEE
Q 008838 318 VNENLHFRFFEDNLGE---NASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIG 394 (551)
Q Consensus 318 vNE~~~~~~~~~~~g~---d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG 394 (551)
-|||.-... ..+. +.....+.+++..||+-.+-.+|-.- +... .++ | + ....+|--+
T Consensus 145 ~Ne~lv~~p---~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~s---p~~~-~~p--y--------N---~r~~vDya~ 204 (587)
T COG3934 145 RNEPLVEAP---ISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPAS---PWPQ-YAP--Y--------N---ARFYVDYAA 204 (587)
T ss_pred cCCcccccc---CChhHHHHHHHHHHHHhhccCCCCeeecCCcCC---cccc-cCC--c--------c---cceeecccc
Confidence 999764221 1122 45678899999999999888877321 1100 000 0 0 011234444
Q ss_pred ecc--cCCCCCC----CHHHHHHHHHHHhhCC-CCEEEeeecCCCC----cchHHHHHHHHHHHHcCCCeeEEEEEeccc
Q 008838 395 LQG--HFSSDQP----DIAYMRSVLDILGSTG-LPIWLTEVDVDIG----PNQSQYLEEILREAYAHPAVKGIISFSGPA 463 (551)
Q Consensus 395 ~Q~--H~~~~~p----~~~~i~~~L~~~a~~g-lpI~iTEldv~~~----~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d 463 (551)
.|. |+..+ | +.......|+-....| +|+-+-|++.++. ..||.+ -..++++.. +-.|-.+|.|-|
T Consensus 205 ~hLY~hyd~s-l~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayf--iw~~lal~~-ggdGaLiwclsd 280 (587)
T COG3934 205 NHLYRHYDTS-LVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYF--IWIRLALDT-GGDGALIWCLSD 280 (587)
T ss_pred chhhhhccCC-hhheeeeeecchhhccchhcccceeeccccCCcccccccccchhh--hhhhhHHhh-cCCceEEEEecC
Confidence 433 23222 1 1223344677778889 9999999999884 344443 333445554 455667899854
Q ss_pred CC--------C----CCccccccCCCCCChhHHHHHHHHHHhcc
Q 008838 464 IA--------G----FKVMPLADKDFKNTPAGDVVDKLLAEWKS 495 (551)
Q Consensus 464 ~~--------g----~~~~~L~d~d~~pKPa~~~~~~l~~~w~t 495 (551)
=. + +-.+|+.+.|..+|-++..+..+.++|..
T Consensus 281 f~~gsdd~ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~kd 324 (587)
T COG3934 281 FHLGSDDSEYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWKD 324 (587)
T ss_pred CccCCCCCCCccccccceeeeecCCCchhhhHHHHHHhccccce
Confidence 21 1 23689999999999999999999887763
No 43
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=94.93 E-value=0.1 Score=53.26 Aligned_cols=223 Identities=16% Similarity=0.150 Sum_probs=102.6
Q ss_pred CceEEeecC--CCCCC---hHHHHHH-HccCceeeeCCCCCCccc--------ccc----CCccch--------hhhHHH
Q 008838 204 FPFGCGMNN--YILTS---TEYQNWF-ASRFKYTTFTNQMKWYST--------EKI----QGEENY--------TIADAM 257 (551)
Q Consensus 204 F~fG~a~~~--~~~~~---~~~~~~~-~~~Fn~~t~eN~~kW~~~--------Ep~----~G~~~~--------~~~D~~ 257 (551)
|.+|...=. ..++. ..|.+.. .+.||.|..----+|... .|- ++.++| ..+|++
T Consensus 14 f~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~ 93 (289)
T PF13204_consen 14 FWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRR 93 (289)
T ss_dssp -EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHH
T ss_pred eehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHH
Confidence 889954311 11222 2344443 568999887433344433 111 112333 457999
Q ss_pred HHHHHHCCceEEEeEeeecCCCCCC-ccccC---CCHHHHHHHHHHHHHHHHHhcCCce-EEEEeeccccccCccccccc
Q 008838 258 LQFCEKNGISVRGHNIFWDNSKQQP-SWVKK---LSPEELREAAAKRINSVTSRYAGKL-IAWDVVNENLHFRFFEDNLG 332 (551)
Q Consensus 258 v~~a~~~gi~vrGH~LvW~~~~~~P-~W~~~---~~~~~~~~~~~~~i~~v~~rY~g~i-~~WDVvNE~~~~~~~~~~~g 332 (551)
|+.|.++||.+- -+++|+.. +.| .|-.. +++ +..++|++-|+.||+..- .-|.+-||- +....-
T Consensus 94 i~~a~~~Gi~~~-lv~~wg~~-~~~~~Wg~~~~~m~~----e~~~~Y~~yv~~Ry~~~~NviW~l~gd~-----~~~~~~ 162 (289)
T PF13204_consen 94 IEKANELGIEAA-LVPFWGCP-YVPGTWGFGPNIMPP----ENAERYGRYVVARYGAYPNVIWILGGDY-----FDTEKT 162 (289)
T ss_dssp HHHHHHTT-EEE-EESS-HHH-HH-------TTSS-H----HHHHHHHHHHHHHHTT-SSEEEEEESSS-------TTSS
T ss_pred HHHHHHCCCeEE-EEEEECCc-cccccccccccCCCH----HHHHHHHHHHHHHHhcCCCCEEEecCcc-----CCCCcC
Confidence 999999999994 56678442 233 47652 133 446789999999999862 569999997 222233
Q ss_pred hHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecc-cCCCCCCCHHHHHH
Q 008838 333 ENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQG-HFSSDQPDIAYMRS 411 (551)
Q Consensus 333 ~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~-H~~~~~p~~~~i~~ 411 (551)
.++...+.+.+|+.||...+-+-.... ...+..| . +.--+|-+-+|+ |-.........+ .
T Consensus 163 ~~~w~~~~~~i~~~dp~~L~T~H~~~~-------~~~~~~~-------~----~~~Wldf~~~Qsgh~~~~~~~~~~~-~ 223 (289)
T PF13204_consen 163 RADWDAMARGIKENDPYQLITIHPCGR-------TSSPDWF-------H----DEPWLDFNMYQSGHNRYDQDNWYYL-P 223 (289)
T ss_dssp HHHHHHHHHHHHHH--SS-EEEEE-BT-------EBTHHHH-------T----T-TT--SEEEB--S--TT--THHHH--
T ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCC-------CCcchhh-------c----CCCcceEEEeecCCCcccchHHHHH-h
Confidence 478889999999999977333322211 0112222 1 133478888996 644332212222 1
Q ss_pred HHHHHh-hCCCCEEEeeecCCCC---------cch-HHHHHHHHHHHHcCCCeeEEE
Q 008838 412 VLDILG-STGLPIWLTEVDVDIG---------PNQ-SQYLEEILREAYAHPAVKGII 457 (551)
Q Consensus 412 ~L~~~a-~~glpI~iTEldv~~~---------~~Q-A~~~~~~~~~~~s~p~v~gi~ 457 (551)
.-..++ ...+||..-|--.-.. ... .+.-+.++..+++-+ --|++
T Consensus 224 ~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa-~aG~t 279 (289)
T PF13204_consen 224 EEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA-YAGHT 279 (289)
T ss_dssp -HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT---SEEE
T ss_pred hhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC-Ccccc
Confidence 113333 4678999999654321 122 245566777777743 24665
No 44
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=94.78 E-value=1.3 Score=41.24 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=66.3
Q ss_pred CCceeeCCCcCCC------------CCCeeeec-----ceeEEE--eeccCCceeEEEeeC--CCCCCc--ceeee--ec
Q 008838 20 GGGLIVNPEFNRG------------TEGWTAFG-----QAAIRE--ATSEEGNKYIVAHSR--TNPLDS--FSQKV--QL 74 (551)
Q Consensus 20 ~~~li~n~~FE~g------------~~gW~~~g-----~~~~~~--~~~~~G~~~l~vt~R--t~~w~G--~~~~v--~l 74 (551)
.-|||+|++|... ++-|...- ..+++. +....-.+++.++.- ...|-- +.|.+ .+
T Consensus 5 AQnLIkN~~F~t~Lt~e~~~as~~T~~~Wfavnde~~G~Tt~a~~~tnD~k~~na~~is~~~~~tsWykafLaQr~~~ga 84 (212)
T PF15425_consen 5 AQNLIKNGDFDTPLTNENTTASNTTFGKWFAVNDEWDGATTIAWINTNDQKTGNAWGISSWDKQTSWYKAFLAQRYTNGA 84 (212)
T ss_dssp -----SSTT--S----B-SSGGGS-TTSEEEEE-S-TTS-EEEEEE-S-TTS-EEEEETT-SS---TTTEEEEEEE-S--
T ss_pred hhhhhhcCccCcchhccccCcCcccccceEEEecccCCceEeeeeccCcccccceEEEeecccCcHHHHHHHHHHHhccc
Confidence 4689999999643 35587752 223432 122233377877443 334544 44555 44
Q ss_pred cCCCEEEEEEEEEEcCCCceEEEEEE--eCCCe----eE-Ec---------------eeEEEeCCCeEEEEeEEEeCCC-
Q 008838 75 EKGKLYSFSAWIQVSRGSDTVAAVFK--TSDGK----LI-DA---------------GKVLAKHGCWSLLKGGLAANFT- 131 (551)
Q Consensus 75 ~~G~~Y~~SawVk~~~gs~~~~~~l~--~~~g~----~~-~~---------------~~~~~~~~~Wt~l~g~~t~~~~- 131 (551)
++ ..|++|.|.|-.....+|++.++ +.||+ +. .. ....-..|.|++++..|-....
T Consensus 85 e~-~mYtLsF~AkA~t~g~qv~V~Irl~~~ngK~~~~Ffmr~~~d~~sqpn~s~a~y~~~ikkAgkWtkv~~~fdfgkvv 163 (212)
T PF15425_consen 85 EK-GMYTLSFDAKADTNGTQVHVFIRLHNDNGKDNQRFFMRRDYDAQSQPNQSDAQYNFKIKKAGKWTKVSVYFDFGKVV 163 (212)
T ss_dssp -S-SEEEEEEEEEESSTT-EEEEEEE-B-TTS-B---EEEETT--TTT-TTSBSS-EEEE--STT--EEEEEEEEEEEEE
T ss_pred cc-ceEEEEEEeecccCCCcEEEEEEEecCCCccceeEEEEeccccccCccchhhhhhhccccCCceEEEEEEeehhHHh
Confidence 44 37999999999886666666654 55553 11 11 0133457999999998843210
Q ss_pred ------------------------CcEEEEEEeCCCceeEEEeccccc
Q 008838 132 ------------------------SLVEILFESKNAEMEIWADSVSLQ 155 (551)
Q Consensus 132 ------------------------~~~~iy~e~~~~~~d~~vDdvsl~ 155 (551)
+...|-|++.+......||+|+|+
T Consensus 164 Nai~s~k~n~~~~vt~td~~~a~Lkdf~i~iq~q~k~s~vlId~VsLk 211 (212)
T PF15425_consen 164 NAISSFKMNPAEEVTDTDDDAAILKDFYICIQSQNKPSSVLIDDVSLK 211 (212)
T ss_dssp S-SSBTTT-TT--EEE--TT-HHHHSEEEEEE--STT-EEEEEEEEEE
T ss_pred HHHhhhccCCCCccccCccchhhhcceEEEEEEcCCCceEEecccEec
Confidence 124577777777888889999885
No 45
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=93.89 E-value=0.5 Score=50.73 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=72.7
Q ss_pred HHHccCceeeeCCCCCCcccccc----CCcc---chhhhHHHHHHHHHCCceEEEeEeeecCCC-----CCCccccCC--
Q 008838 223 WFASRFKYTTFTNQMKWYSTEKI----QGEE---NYTIADAMLQFCEKNGISVRGHNIFWDNSK-----QQPSWVKKL-- 288 (551)
Q Consensus 223 ~~~~~Fn~~t~eN~~kW~~~Ep~----~G~~---~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~-----~~P~W~~~~-- 288 (551)
+-..+||.+|+ ++-|..+++. |... .+...|++|+||++.||.|. |-||.-. ....|....
T Consensus 82 ik~~G~n~VRi--Pi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~---iD~H~~~~~~~~~~~s~~~~~~~ 156 (407)
T COG2730 82 IKSAGFNAVRI--PIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVL---IDLHGYPGGNNGHEHSGYTSDYK 156 (407)
T ss_pred HHHcCCcEEEc--ccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEE---EEecccCCCCCCcCccccccccc
Confidence 33579999999 6776555543 2222 12257899999999999983 4455421 122333221
Q ss_pred CHHHHHHHHHHHHHHHHHhcCC--ceEEEEeeccccc---cCccccccchHHHHHHHHHHh-ccCCCc
Q 008838 289 SPEELREAAAKRINSVTSRYAG--KLIAWDVVNENLH---FRFFEDNLGENASAEFYRIAH-QLDPNT 350 (551)
Q Consensus 289 ~~~~~~~~~~~~i~~v~~rY~g--~i~~WDVvNE~~~---~~~~~~~~g~d~~~~af~~Ar-~~dP~a 350 (551)
..++..++..+..+.++.||++ .|...|++|||.. ...|.... ..|+..+| +....+
T Consensus 157 ~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~-----~~A~~~v~~~i~~~~ 219 (407)
T COG2730 157 EENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGD-----DEAYDVVRNAILSNA 219 (407)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccch-----HHHHHHHHhhhhhcC
Confidence 1234556677778899999987 5778999999983 33443211 56666664 334433
No 46
>PLN00197 beta-amylase; Provisional
Probab=93.42 E-value=0.75 Score=50.10 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=50.5
Q ss_pred HHHHHccCceeeeCCCCCCccccc-cCCccchhhhHHHHHHHHHCCceEEEeEeeecCC------C---CCCcccc
Q 008838 221 QNWFASRFKYTTFTNQMKWYSTEK-IQGEENYTIADAMLQFCEKNGISVRGHNIFWDNS------K---QQPSWVK 286 (551)
Q Consensus 221 ~~~~~~~Fn~~t~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~------~---~~P~W~~ 286 (551)
+.+-..+...|.. +.=|+-+|+ .|++|+|+...++++.+++.||+++- +|-+|.= . ..|.|+.
T Consensus 134 ~~LK~~GVdGVmv--DvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~-VmSFHqCGGNVGD~~~IpLP~WV~ 206 (573)
T PLN00197 134 QALKSAGVEGIMM--DVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQA-VMSFHQCGGNVGDSCTIPLPKWVV 206 (573)
T ss_pred HHHHHcCCCEEEE--eeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 3444568888888 799999998 89999999999999999999999964 4556630 0 2899985
No 47
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.39 E-value=0.19 Score=55.59 Aligned_cols=116 Identities=16% Similarity=0.287 Sum_probs=83.1
Q ss_pred CceEEeecCCCCCChHHHHHH----HccCceeeeCCCCCCccccccCCccchhhh-H--HHHHHHHHCCceE--EEeEee
Q 008838 204 FPFGCGMNNYILTSTEYQNWF----ASRFKYTTFTNQMKWYSTEKIQGEENYTIA-D--AMLQFCEKNGISV--RGHNIF 274 (551)
Q Consensus 204 F~fG~a~~~~~~~~~~~~~~~----~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~-D--~~v~~a~~~gi~v--rGH~Lv 274 (551)
..|...+|.-....+.+.+++ .-.+|.|.. -.-|.-.||.+|+|+|+.- | +++..|+++|+-| |..+-+
T Consensus 35 ~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~Iqt--YVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyI 112 (649)
T KOG0496|consen 35 ILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQT--YVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYI 112 (649)
T ss_pred EEEEeccccccCChhhhHHHHHHHHhcCCceeee--eeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCCCeE
Confidence 457778887665544455554 347999887 6889999999999999863 3 6788888999876 444433
Q ss_pred ---ecCCCCCCccccCC-------CHHHHHHHHHHHHHHHHHhc-------CCceEEEEeecccc
Q 008838 275 ---WDNSKQQPSWVKKL-------SPEELREAAAKRINSVTSRY-------AGKLIAWDVVNENL 322 (551)
Q Consensus 275 ---W~~~~~~P~W~~~~-------~~~~~~~~~~~~i~~v~~rY-------~g~i~~WDVvNE~~ 322 (551)
|.. ...|-|+... +.+..+..|+++.+.++.+- +|-|..-.|=||--
T Consensus 113 caEw~~-GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 113 CAEWNF-GGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred EecccC-CCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 644 2578676542 45667888888888777632 46799999999954
No 48
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=93.16 E-value=0.75 Score=47.34 Aligned_cols=181 Identities=14% Similarity=0.071 Sum_probs=99.5
Q ss_pred HHHCCceEEEeEeeecCCCCCCccccCC---C-------HHHHHHHHHHHHHHHHHhcCC---ceEEEEeeccccccC--
Q 008838 261 CEKNGISVRGHNIFWDNSKQQPSWVKKL---S-------PEELREAAAKRINSVTSRYAG---KLIAWDVVNENLHFR-- 325 (551)
Q Consensus 261 a~~~gi~vrGH~LvW~~~~~~P~W~~~~---~-------~~~~~~~~~~~i~~v~~rY~g---~i~~WDVvNE~~~~~-- 325 (551)
+..+|+.|-.-+ |. .|.|++.- . +.+-...+.+|+.+.+..|+. .+++--|=|||+-..
T Consensus 111 ~in~g~ivfASP--Ws----pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~ 184 (433)
T COG5520 111 AINPGMIVFASP--WS----PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTY 184 (433)
T ss_pred hcCCCcEEEecC--CC----CchhhhhccCcCCccccccchhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCC
Confidence 445666665432 43 57888642 1 123455667777777766654 589999999998542
Q ss_pred ccccccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCCCCC
Q 008838 326 FFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPD 405 (551)
Q Consensus 326 ~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~ 405 (551)
.|.--+..+..+-+-+.++-..-.+++++=|-.-. .+ ++-+. +++-|.+-.-+|++|+|.+-+.-
T Consensus 185 d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~-~~--------~~~dp---~lnDp~a~a~~~ilg~H~Ygg~v--- 249 (433)
T COG5520 185 DWCWWTPQEELRFMRQYLASINAEMRVIIPESFKD-LP--------NMSDP---ILNDPKALANMDILGTHLYGGQV--- 249 (433)
T ss_pred CcccccHHHHHHHHHHhhhhhccccEEecchhccc-cc--------ccccc---cccCHhHhcccceeEeeeccccc---
Confidence 22223344555555556665566788887553321 11 11111 11111123358999996654321
Q ss_pred HHHHHHHHHHHhhCCCCEEEeeecCCCC-c----chHHHHHHHHHHHHcCCCeeEEEEEeccc
Q 008838 406 IAYMRSVLDILGSTGLPIWLTEVDVDIG-P----NQSQYLEEILREAYAHPAVKGIISFSGPA 463 (551)
Q Consensus 406 ~~~i~~~L~~~a~~glpI~iTEldv~~~-~----~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d 463 (551)
...-..|.+....|+.+|.||.-.+.. + +.+-.+..-+-.+.-..++.|+.||.+.-
T Consensus 250 -~~~p~~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~gm~~gg~~ayv~W~i~~ 311 (433)
T COG5520 250 -SDQPYPLAKQKPAGKDLWMTECYPPESDPNSADREALHVALHIHIGMTEGGFQAYVWWNIRL 311 (433)
T ss_pred -ccchhhHhhCCCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhhccccCccEEEEEEEee
Confidence 111233444445699999999866542 2 11222222222333346899999999863
No 49
>PLN02801 beta-amylase
Probab=92.31 E-value=2 Score=46.45 Aligned_cols=63 Identities=10% Similarity=0.278 Sum_probs=50.1
Q ss_pred HHHHHccCceeeeCCCCCCccccc-cCCccchhhhHHHHHHHHHCCceEEEeEeeecCCC---------CCCcccc
Q 008838 221 QNWFASRFKYTTFTNQMKWYSTEK-IQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSK---------QQPSWVK 286 (551)
Q Consensus 221 ~~~~~~~Fn~~t~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~---------~~P~W~~ 286 (551)
+++-..+...|.. +.=|+.+|+ .|++|+|+...++++.+++.||+++- +|-.|.=. ..|.|+.
T Consensus 44 ~~LK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~ 116 (517)
T PLN02801 44 KRLKEAGVDGVMV--DVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQA-IMSFHQCGGNVGDAVNIPIPQWVR 116 (517)
T ss_pred HHHHHcCCCEEEE--eeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 3444568888888 799999997 69999999999999999999999964 35566300 1799985
No 50
>PLN02161 beta-amylase
Probab=91.77 E-value=1.3 Score=47.96 Aligned_cols=64 Identities=11% Similarity=0.322 Sum_probs=51.0
Q ss_pred HHHHHHccCceeeeCCCCCCccccc-cCCccchhhhHHHHHHHHHCCceEEEeEeeecC------CC---CCCcccc
Q 008838 220 YQNWFASRFKYTTFTNQMKWYSTEK-IQGEENYTIADAMLQFCEKNGISVRGHNIFWDN------SK---QQPSWVK 286 (551)
Q Consensus 220 ~~~~~~~~Fn~~t~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~------~~---~~P~W~~ 286 (551)
.+++-..+...|.. +.=|+-+|+ .|++|+|+...++++.+++.||+++- +|-.|. .. ..|.|+.
T Consensus 123 L~~LK~~GVdGVmv--DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNvGd~~~IpLP~WV~ 196 (531)
T PLN02161 123 LKALKLAGVHGIAV--EVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHV-ALCFHSNMHLFGGKGGISLPLWIR 196 (531)
T ss_pred HHHHHHcCCCEEEE--EeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCccCccCCHHHH
Confidence 33444568888888 799999998 89999999999999999999999964 355664 11 2899985
No 51
>PLN02803 beta-amylase
Probab=91.43 E-value=1.4 Score=47.86 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=50.8
Q ss_pred HHHHHHccCceeeeCCCCCCccccc-cCCccchhhhHHHHHHHHHCCceEEEeEeeecCCC---------CCCcccc
Q 008838 220 YQNWFASRFKYTTFTNQMKWYSTEK-IQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSK---------QQPSWVK 286 (551)
Q Consensus 220 ~~~~~~~~Fn~~t~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~---------~~P~W~~ 286 (551)
.+.+-..+...|.. +.=|+-+|+ .|++|+|+...++++.+++.||+++. +|-+|.=. ..|.|+.
T Consensus 113 L~~LK~~GVdGVmv--DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~ 186 (548)
T PLN02803 113 LMALRSAGVEGVMV--DAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQV-VMSFHQCGGNVGDSCSIPLPPWVL 186 (548)
T ss_pred HHHHHHcCCCEEEE--EeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 33444568888888 799999998 59999999999999999999999964 45566300 2799985
No 52
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=88.96 E-value=12 Score=32.46 Aligned_cols=85 Identities=12% Similarity=0.180 Sum_probs=50.0
Q ss_pred ceee-eeccCCCEEEEEEEEEEcCCCceEEEEEEeC--CCeeEEceeEEEe--CCCeEEEEeEEEeCCCCcEEEEEEeCC
Q 008838 68 FSQK-VQLEKGKLYSFSAWIQVSRGSDTVAAVFKTS--DGKLIDAGKVLAK--HGCWSLLKGGLAANFTSLVEILFESKN 142 (551)
Q Consensus 68 ~~~~-v~l~~G~~Y~~SawVk~~~gs~~~~~~l~~~--~g~~~~~~~~~~~--~~~Wt~l~g~~t~~~~~~~~iy~e~~~ 142 (551)
+... |.+..+.+|+|++.+....+. -++.|+.+ +|+....-....+ -..|+.++....++. +.=.|||....
T Consensus 34 ~~~~~Vd~~~~g~y~~~~~~a~~~~~--~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~-G~h~i~l~~~~ 110 (125)
T PF03422_consen 34 IEYNNVDVPEAGTYTLTIRYANGGGG--GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPA-GKHTIYLVFNG 110 (125)
T ss_dssp EEEEEEEESSSEEEEEEEEEEESSSS--EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEES-EEEEEEEEESS
T ss_pred EEEEEEeeCCCceEEEEEEEECCCCC--cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCC-CeeEEEEEEEC
Confidence 4444 788999999999666665544 44455443 3443322222222 235777888887777 55566666533
Q ss_pred Cc-eeEEEeccccc
Q 008838 143 AE-MEIWADSVSLQ 155 (551)
Q Consensus 143 ~~-~d~~vDdvsl~ 155 (551)
.. ..+.||-|++.
T Consensus 111 ~~~~~~niD~~~f~ 124 (125)
T PF03422_consen 111 GDGWAFNIDYFQFT 124 (125)
T ss_dssp SSSB-EEEEEEEEE
T ss_pred CCCceEEeEEEEEE
Confidence 22 45778888764
No 53
>PF09212 CBM27: Carbohydrate binding module 27; InterPro: IPR015295 This domain is found in carbohydrate binding proteins that bind to beta-1, 4-mannooligosaccharides, carob galactomannan, and konjac glucomannan, but not to cellulose (insoluble and soluble) or soluble birchwood xylan. The region adopts a beta sandwich structure comprising 13 beta strands with a single, small alpha-helix and a single metal atom []. ; PDB: 1OF3_A 1OF4_A 1OH4_A 1PMJ_X 1PMH_X.
Probab=88.93 E-value=8.6 Score=35.98 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCcCCCCCCeeeecc--eeEEE---e-eccCCceeEEEe--e-CCCCCCcceeee----eccCCCEEEEEEEEEEcCC-
Q 008838 26 NPEFNRGTEGWTAFGQ--AAIRE---A-TSEEGNKYIVAH--S-RTNPLDSFSQKV----QLEKGKLYSFSAWIQVSRG- 91 (551)
Q Consensus 26 n~~FE~g~~gW~~~g~--~~~~~---~-~~~~G~~~l~vt--~-Rt~~w~G~~~~v----~l~~G~~Y~~SawVk~~~g- 91 (551)
.-+|.++++||...|. +.++. + ....|+++|++. - -...|+-..+ + .|.....-+|.+++=-.+.
T Consensus 10 ~~~f~~~~~g~~~~G~~q~~~~~~~i~~~~~~g~gaLklnv~~~~~~~W~E~ki-~~~~~dls~~~~l~fDv~iP~~~~~ 88 (170)
T PF09212_consen 10 DFSFDDSIEGWQNNGTWQASFSSPSISHSGDGGSGALKLNVDFDGNNDWDELKI-FKNFEDLSEYNRLEFDVYIPKNEKY 88 (170)
T ss_dssp ---SGGGGGGEEEEEEES-EEEEEEEEEESSGGGSEEEEEEEE-TTSTTEEEEE-CCEECCGCC--EEEEEEEEEHHCCS
T ss_pred EecCCccccchhhCCccccccccCceeEeccCCCccEEEEeecCCCCCcchhhh-hhhhhhcCCccEEEEEEEeCCCCCC
Confidence 5678899999998763 33322 1 234577888863 2 2446988777 4 5667777777766654432
Q ss_pred CceEEEEEEeCCCe--e------E---EceeEEEeCCCeEEEEeEEEeCCC---CcEEEEEEeC--CCceeEEEeccccc
Q 008838 92 SDTVAAVFKTSDGK--L------I---DAGKVLAKHGCWSLLKGGLAANFT---SLVEILFESK--NAEMEIWADSVSLQ 155 (551)
Q Consensus 92 s~~~~~~l~~~~g~--~------~---~~~~~~~~~~~Wt~l~g~~t~~~~---~~~~iy~e~~--~~~~d~~vDdvsl~ 155 (551)
+..++......+|= + . ....+++...+..++.-++-++.. ..+.|-+=+. +-.+.+|||||.|.
T Consensus 89 ~G~l~~~a~l~~gW~k~g~~~~~~~v~dle~v~i~Gk~Y~k~~v~i~~~~~~~~~~lvl~ivG~~~~Y~GpIYIDNV~L~ 168 (170)
T PF09212_consen 89 SGSLKPYAALNPGWTKIGMDTTEINVKDLETVTIDGKGYKKIHVSIEFDSSKKATQLVLQIVGSNLDYNGPIYIDNVKLI 168 (170)
T ss_dssp SSEE-EEEEECTTTEEECCCSCEEECCCSEEEEETTEEEEEEEEEEE--SSCCE-EEEEEEEEES--EEEEEEEEEEEEE
T ss_pred CccEEEEEEcCCChHHhccccccccccccceEEECCeEEEEEEEEEEccccCCCCcEEEEEccccccccCCEEEEeEEEe
Confidence 33455443322320 0 0 122344445567777777776654 2344444332 34679999999885
No 54
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=88.83 E-value=1.9 Score=34.56 Aligned_cols=42 Identities=31% Similarity=0.357 Sum_probs=28.8
Q ss_pred eeeeeCCCceEEEe-eeeeeEEEEEEeccceeEEEE-EEEecCCC
Q 008838 498 LEATTDMKGFFEFS-LFHGEYNLTVKHSVTHALTSI-SFKVTKHL 540 (551)
Q Consensus 498 ~~~~td~~G~~~~~-~f~G~y~v~v~~~~~~~~~~~-~~~~~~~~ 540 (551)
....||++|.|.|+ ...|.|.|.+++.+-. ..+. .+.+..+.
T Consensus 30 ~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~-~~~~~~v~v~~~~ 73 (82)
T PF13620_consen 30 YTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ-PQTQENVTVTAGQ 73 (82)
T ss_dssp CEEE--TTSEEEEEEE-SEEEEEEEEBTTEE--EEEEEEEESSSS
T ss_pred EEEEECCCceEEEEccCCEeEEEEEEECCcc-eEEEEEEEEeCCC
Confidence 46899999999999 7889999999988532 3333 46666544
No 55
>PF14299 PP2: Phloem protein 2
Probab=88.82 E-value=3.6 Score=37.90 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=53.2
Q ss_pred eccCCCEEEEEEEEEEcCC-----CceEEEEEEeCCCee-EE---ceeEEEeCCCeEEEE-eEEEeCCCCcEEEEE---E
Q 008838 73 QLEKGKLYSFSAWIQVSRG-----SDTVAAVFKTSDGKL-ID---AGKVLAKHGCWSLLK-GGLAANFTSLVEILF---E 139 (551)
Q Consensus 73 ~l~~G~~Y~~SawVk~~~g-----s~~~~~~l~~~~g~~-~~---~~~~~~~~~~Wt~l~-g~~t~~~~~~~~iy~---e 139 (551)
.|.||++|.++.-+|+.+. ..++++++...+++. .. .--.....++|-++. |.|..+......|+| |
T Consensus 55 ~Lsp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E 134 (154)
T PF14299_consen 55 MLSPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGGDDGEVEFSMYE 134 (154)
T ss_pred EcCCCCEEEEEEEEEecCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCCCCcEEEEEEEE
Confidence 5889999999999999864 236777777665532 11 111124478999999 588888643333333 2
Q ss_pred e--CCCceeEEEecccccc
Q 008838 140 S--KNAEMEIWADSVSLQP 156 (551)
Q Consensus 140 ~--~~~~~d~~vDdvsl~~ 156 (551)
. ..-..-+.|+.|.|.|
T Consensus 135 ~~~~~wK~GLiv~GieIRP 153 (154)
T PF14299_consen 135 VDSGHWKGGLIVEGIEIRP 153 (154)
T ss_pred ecCCcccCeEEEEEEEEec
Confidence 2 2334456677776654
No 56
>PLN02705 beta-amylase
Probab=88.00 E-value=1.2 Score=49.02 Aligned_cols=64 Identities=8% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHHHHccCceeeeCCCCCCccccc-cCCccchhhhHHHHHHHHHCCceEEEeEeeecCCC---------CCCcccc
Q 008838 220 YQNWFASRFKYTTFTNQMKWYSTEK-IQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSK---------QQPSWVK 286 (551)
Q Consensus 220 ~~~~~~~~Fn~~t~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~---------~~P~W~~ 286 (551)
.+.+-..+...|.. +.=|+-+|+ .|++|+|+...++++.+++.||+++- +|-+|.-. ..|.|+.
T Consensus 274 L~aLK~aGVdGVmv--DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv-VmSFHqCGGNVGD~~~IPLP~WV~ 347 (681)
T PLN02705 274 LSHMKSLNVDGVVV--DCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQV-VMAFHEYGGNASGNVMISLPQWVL 347 (681)
T ss_pred HHHHHHcCCCEEEE--eeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEeeccCCCCCCcccccCCHHHH
Confidence 33444568888888 799999998 69999999999999999999999964 45567310 2899985
No 57
>PLN02905 beta-amylase
Probab=87.81 E-value=1.2 Score=49.07 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=50.4
Q ss_pred HHHHHccCceeeeCCCCCCccccc-cCCccchhhhHHHHHHHHHCCceEEEeEeeecCC------C---CCCcccc
Q 008838 221 QNWFASRFKYTTFTNQMKWYSTEK-IQGEENYTIADAMLQFCEKNGISVRGHNIFWDNS------K---QQPSWVK 286 (551)
Q Consensus 221 ~~~~~~~Fn~~t~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~------~---~~P~W~~ 286 (551)
+.+-..+...|.. +.=|+-+|+ .|++|+|+...++++.+++.||+++- +|-+|.= . ..|.|+.
T Consensus 293 ~aLK~aGVdGVmv--DVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqv-VMSFHqCGGNVGD~~~IPLP~WV~ 365 (702)
T PLN02905 293 RILKSINVDGVKV--DCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQV-VMSFHECGGNVGDDVCIPLPHWVA 365 (702)
T ss_pred HHHHHcCCCEEEE--eeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 3444568888888 799999998 78999999999999999999999964 4556630 0 2899985
No 58
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=87.64 E-value=16 Score=41.21 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=94.2
Q ss_pred HHHHHHHHC--CceEEEeEeeecCCCCCCccccCC---C---HHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccCcc
Q 008838 256 AMLQFCEKN--GISVRGHNIFWDNSKQQPSWVKKL---S---PEELREAAAKRINSVTSRYAGKLIAWDVVNENLHFRFF 327 (551)
Q Consensus 256 ~~v~~a~~~--gi~vrGH~LvW~~~~~~P~W~~~~---~---~~~~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~~~~ 327 (551)
.+++-|+++ +|++-| |-|. .|.|+... + +......+.++|....+.|+=.|++-.+|||-..+
T Consensus 116 ~L~~eAKkrNP~ikl~~--L~W~----~PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~~--- 186 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYG--LPWG----FPGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGFD--- 186 (669)
T ss_dssp HHHHHHHHH-TT-EEEE--EES-----B-GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS------
T ss_pred hhHHHHHhhCCCCeEEE--eccC----CCccccCCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCCC---
Confidence 567777776 466654 7786 79999763 1 12222345678877778888899999999996432
Q ss_pred ccccchHHHHHHHHHHhc-cCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCCCCCH
Q 008838 328 EDNLGENASAEFYRIAHQ-LDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDI 406 (551)
Q Consensus 328 ~~~~g~d~~~~af~~Ar~-~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~ 406 (551)
.+|++..-+...+ ..-++||+..|-. .+.- ...++.- .+|.+ .+|.||. |+.... +.
T Consensus 187 -----~~~ik~lr~~l~~~gy~~vkiva~D~~-~~~~------~~~m~~D-~~l~~------avdvig~--HY~~~~-~~ 244 (669)
T PF02057_consen 187 -----VNYIKWLRKALNSNGYNKVKIVAADNN-WESI------SDDMLSD-PELRN------AVDVIGY--HYPGTY-SS 244 (669)
T ss_dssp -----HHHHHHHHHHHHHTT-TT-EEEEEEE--STTH------HHHHHH--HHHHH------H--EEEE--ES-TT----
T ss_pred -----hhHHHHHHHHHhhccccceEEEEeCCC-ccch------hhhhhcC-HHHHh------cccEecc--ccCCCC-cH
Confidence 2454322222222 3456999998832 1110 1122221 12222 4799999 665431 11
Q ss_pred HHHHHHHHHHhhCCCCEEEeeecCC-CCcchHHHHHHHHHHHHcCCCeeEEEEEecccC----CCCCccccccC------
Q 008838 407 AYMRSVLDILGSTGLPIWLTEVDVD-IGPNQSQYLEEILREAYAHPAVKGIISFSGPAI----AGFKVMPLADK------ 475 (551)
Q Consensus 407 ~~i~~~L~~~a~~glpI~iTEldv~-~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~----~g~~~~~L~d~------ 475 (551)
.. . ...|+|||-+|=-.. ....=+.-+.+.+..-+-.......+.|.+-.. --....+|...
T Consensus 245 ~~---a----~~~~K~lW~SE~~s~~~~~~g~g~~ar~ln~~yv~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG 317 (669)
T PF02057_consen 245 KN---A----KLTGKPLWSSEDYSTFNYNVGAGCWARILNRNYVNGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSG 317 (669)
T ss_dssp HH---H----HHHT-EEEEEEEE-S-TTHHHHHHHHHHHHHHHHHH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT-
T ss_pred HH---H----HHhCCCeEEcCCcccccCcCchHHHHHHHHhhhhccceEEEEeehhhhhhcCCCCCCCccceEecCCccc
Confidence 11 1 124999999994332 121122233333333333345778888886421 11223344433
Q ss_pred CCCCChhHHHHHHHH---H-HhccCceeeeeCCCceEE-EeeeeeeEEEEE
Q 008838 476 DFKNTPAGDVVDKLL---A-EWKSRALEATTDMKGFFE-FSLFHGEYNLTV 521 (551)
Q Consensus 476 d~~pKPa~~~~~~l~---~-~w~t~~~~~~td~~G~~~-~~~f~G~y~v~v 521 (551)
.|..-++..++...- + .|.--+..+.....|.|. +.--.|+|.+.+
T Consensus 318 ~Y~v~~~iWv~AHtTQFt~pGW~YL~~~G~l~~gGSYVtLtd~~gn~tiii 368 (669)
T PF02057_consen 318 HYEVDSPIWVTAHTTQFTQPGWRYLDSVGHLRGGGSYVTLTDGTGNYTIII 368 (669)
T ss_dssp --B--HHHHHHHHHHTT--TT-EEES--EE-TTS-EEEEEE-SSS-EEEEE
T ss_pred ceEecceeeeeeehhccCCCCeEEccCccccCCCcceEEeecCCCCceEEE
Confidence 223344444444332 2 565422234454444432 222245665544
No 59
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=86.96 E-value=22 Score=33.02 Aligned_cols=126 Identities=18% Similarity=0.380 Sum_probs=59.2
Q ss_pred eeCCCcCCC--CCCeeee---ccee----EEE----eeccCCceeEEEeeCCCCCCcceee--e---eccCCCEEEEEEE
Q 008838 24 IVNPEFNRG--TEGWTAF---GQAA----IRE----ATSEEGNKYIVAHSRTNPLDSFSQK--V---QLEKGKLYSFSAW 85 (551)
Q Consensus 24 i~n~~FE~g--~~gW~~~---g~~~----~~~----~~~~~G~~~l~vt~Rt~~w~G~~~~--v---~l~~G~~Y~~Saw 85 (551)
|.+.+||++ ..||+.- |+.. ... -.+|+|.+++.-............+ | .| +|. .+++.|
T Consensus 2 ~l~E~Fe~~~~p~gWTiiDadgdg~~W~~~~~~~~~~~~~~g~~~~~S~s~~~~~~~~~~DnWLISP~l-~g~-~~i~f~ 79 (167)
T PF07675_consen 2 ILSEDFENGTIPAGWTIIDADGDGQTWKFYTNSFTSLTPHSGDKAAASFSYNGGSGTLTADNWLISPQL-SGA-QTISFW 79 (167)
T ss_dssp EECCTSTTTSS-TTSEEEETT-SS--SECCETTTTT--BTTCSEEEEEESECTTCEE---EEEEE-S---TT--EEEEEE
T ss_pred eeeccCCCCcCcCCcEEEEcCCCCcccccccccccccccccCCeEEEEEeeccccCccCCCceEEecCc-CCC-CEEEEE
Confidence 568899987 4789774 2221 111 1368898887754432221111111 2 56 664 699999
Q ss_pred EEEcCC---CceEEEEEEeCC---CeeEEceeEEEe--------------CCCeEEEEeEEEeCCC-CcEEE-EEEeCCC
Q 008838 86 IQVSRG---SDTVAAVFKTSD---GKLIDAGKVLAK--------------HGCWSLLKGGLAANFT-SLVEI-LFESKNA 143 (551)
Q Consensus 86 Vk~~~g---s~~~~~~l~~~~---g~~~~~~~~~~~--------------~~~Wt~l~g~~t~~~~-~~~~i-y~e~~~~ 143 (551)
|+.... +....|.+...+ +.+..+...+.+ .+.|++.+-.. |.. +.+-+ .+.+ ..
T Consensus 80 v~~~~~~~~~E~y~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~L--p~gt~Y~afrh~~~-td 156 (167)
T PF07675_consen 80 VKSQDASYGPEHYEVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVDL--PAGTKYFAFRHYNS-TD 156 (167)
T ss_dssp EEECTTTC---EEEEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEEE---TT--EEEEEEES---S
T ss_pred EEeccCCCCCceEEEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEEEeC--CCCCcEEEEEeccC-CC
Confidence 999763 234554444321 224433322221 35798887654 543 43333 2223 44
Q ss_pred ceeEEEecccc
Q 008838 144 EMEIWADSVSL 154 (551)
Q Consensus 144 ~~d~~vDdvsl 154 (551)
.--|+||||+|
T Consensus 157 ~~~l~iDDV~v 167 (167)
T PF07675_consen 157 AFYLMIDDVTV 167 (167)
T ss_dssp S-EEEEEEEEE
T ss_pred ceEEEeccEEC
Confidence 56789999975
No 60
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=86.05 E-value=0.76 Score=48.56 Aligned_cols=94 Identities=14% Similarity=0.267 Sum_probs=59.9
Q ss_pred HHHHHHccCceeeeCCCCCCcccccc-CCccchhhhHHHHHHHHHCCceEEEeEeeecCCC---------CCCccccC--
Q 008838 220 YQNWFASRFKYTTFTNQMKWYSTEKI-QGEENYTIADAMLQFCEKNGISVRGHNIFWDNSK---------QQPSWVKK-- 287 (551)
Q Consensus 220 ~~~~~~~~Fn~~t~eN~~kW~~~Ep~-~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~---------~~P~W~~~-- 287 (551)
.+++-..+...|.. +.=|+.+|+. |++|+|+..+++.+.+++.||+++- +|-.|.-. ..|.|+..
T Consensus 22 L~~LK~~GV~GVmv--dvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~-vmsfH~cGgNvgD~~~IpLP~Wv~~~~ 98 (402)
T PF01373_consen 22 LRALKSAGVDGVMV--DVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQV-VMSFHQCGGNVGDDCNIPLPSWVWEIG 98 (402)
T ss_dssp HHHHHHTTEEEEEE--EEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEE-EEE-S-BSSSTTSSSEB-S-HHHHHHH
T ss_pred HHHHHHcCCcEEEE--EeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEeeecCCCCCCCccCCcCCHHHHhcc
Confidence 34444567888888 7899999997 8999999999999999999999964 34455311 26899852
Q ss_pred ------------------CCH----HHHHHHHHHHHHHHHHhcCCceEEEEeecc
Q 008838 288 ------------------LSP----EELREAAAKRINSVTSRYAGKLIAWDVVNE 320 (551)
Q Consensus 288 ------------------~~~----~~~~~~~~~~i~~v~~rY~g~i~~WDVvNE 320 (551)
++| .. .+...+|++...++|+..+ +++-|
T Consensus 99 ~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~---~~I~~ 149 (402)
T PF01373_consen 99 KKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL---STITE 149 (402)
T ss_dssp HHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH---TGEEE
T ss_pred ccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH---hhheE
Confidence 011 12 5666677777777766544 45555
No 61
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=85.77 E-value=16 Score=35.63 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=52.3
Q ss_pred ccCCceeEEEeeC--CCCCCccee-ee---eccCCCEEEEEEEEEEcCCCceEEEEEEeCCCeeEEceeEEEeCCCeEEE
Q 008838 49 SEEGNKYIVAHSR--TNPLDSFSQ-KV---QLEKGKLYSFSAWIQVSRGSDTVAAVFKTSDGKLIDAGKVLAKHGCWSLL 122 (551)
Q Consensus 49 ~~~G~~~l~vt~R--t~~w~G~~~-~v---~l~~G~~Y~~SawVk~~~gs~~~~~~l~~~~g~~~~~~~~~~~~~~Wt~l 122 (551)
..+|.++|.|.-+ ..+.+.... .- .--+|...+||+||.-.+-...+.+.|++.+|....+.-....-.+|.+|
T Consensus 71 ~~~~~~vLgV~~~F~~~g~n~~~~~~p~~~Ipi~g~~k~I~vWV~G~n~~h~L~v~lrD~~G~~~~l~~G~L~f~GWK~L 150 (217)
T PF04620_consen 71 VRAGEKVLGVRYDFPRRGNNSVAFIRPPFPIPIPGVIKSISVWVYGDNYPHWLEVLLRDAKGEVHQLPLGSLNFDGWKNL 150 (217)
T ss_pred ccCCCcEEEEEEEeecCCCceEEEEcCCcceeccceeEEEEEEEECCCCCceEEEEEEcCCCCEEEEEeeeecCCceeEE
Confidence 4678888888654 223333222 11 33578999999999998767779999999988643322223456789999
Q ss_pred EeE
Q 008838 123 KGG 125 (551)
Q Consensus 123 ~g~ 125 (551)
+..
T Consensus 151 ~~~ 153 (217)
T PF04620_consen 151 TVN 153 (217)
T ss_pred EEE
Confidence 875
No 62
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=83.95 E-value=26 Score=36.21 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=98.3
Q ss_pred HccCceeeeC-----CCCCCccccccC-------C-ccchhhhHHHHHHHHHCCceEEEeEeeecCC--------CCCCc
Q 008838 225 ASRFKYTTFT-----NQMKWYSTEKIQ-------G-EENYTIADAMLQFCEKNGISVRGHNIFWDNS--------KQQPS 283 (551)
Q Consensus 225 ~~~Fn~~t~e-----N~~kW~~~Ep~~-------G-~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~--------~~~P~ 283 (551)
..+||.|-+. ..|+.+.++|.. | ...|+.+..+|+.|.++||+|++=. -.... ...|.
T Consensus 30 ~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~-~~~~~~~~~~~~~~~~p~ 108 (311)
T PF02638_consen 30 SAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWF-RVGFNAPDVSHILKKHPE 108 (311)
T ss_pred HcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEE-EeecCCCchhhhhhcCch
Confidence 4578876651 123344455532 2 1247889999999999999996432 11110 11455
Q ss_pred ccc--------C----------CC--HHHHHHHHHHHHHHHHHhcCCceEEEE-ee---ccc----cccCccccccc---
Q 008838 284 WVK--------K----------LS--PEELREAAAKRINSVTSRYAGKLIAWD-VV---NEN----LHFRFFEDNLG--- 332 (551)
Q Consensus 284 W~~--------~----------~~--~~~~~~~~~~~i~~v~~rY~g~i~~WD-Vv---NE~----~~~~~~~~~~g--- 332 (551)
|+. . ++ .++.++.+.+-|++++++|.=.=.++| .. .+. .....|.+..|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~ 188 (311)
T PF02638_consen 109 WFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDP 188 (311)
T ss_pred hheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCC
Confidence 542 1 12 257899999999999999961111222 10 000 00001111111
Q ss_pred -----------------hHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEe
Q 008838 333 -----------------ENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGL 395 (551)
Q Consensus 333 -----------------~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~ 395 (551)
.++++..++.+|+..|++++-+-=+....... ..-|.+..+-+ . .+.||-|=-
T Consensus 189 ~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y-----~~~~qD~~~W~-~----~G~iD~i~P 258 (311)
T PF02638_consen 189 FSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAY-----DDYYQDWRNWL-K----EGYIDYIVP 258 (311)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhh-----hheeccHHHHH-h----cCCccEEEe
Confidence 23567899999999999999774332221000 11222222222 2 468999999
Q ss_pred cccCC-CCCCCHHHHHHHHHHHhh
Q 008838 396 QGHFS-SDQPDIAYMRSVLDILGS 418 (551)
Q Consensus 396 Q~H~~-~~~p~~~~i~~~L~~~a~ 418 (551)
|.+.. .. .....+...+...+.
T Consensus 259 q~Y~~~~~-~~~~~~~~~~~~w~~ 281 (311)
T PF02638_consen 259 QIYWSDFS-HFTAPYEQLAKWWAK 281 (311)
T ss_pred eecccccc-hhHHHHHHHHHHHHH
Confidence 98865 32 123445555555543
No 63
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=83.58 E-value=9.1 Score=36.08 Aligned_cols=129 Identities=10% Similarity=0.121 Sum_probs=67.6
Q ss_pred eCCCcCCC-CCCeeeecceeEEEee--ccCCceeEEEeeCCCCCCcceeee----ec----cCCCEE---EEEEEEEEcC
Q 008838 25 VNPEFNRG-TEGWTAFGQAAIREAT--SEEGNKYIVAHSRTNPLDSFSQKV----QL----EKGKLY---SFSAWIQVSR 90 (551)
Q Consensus 25 ~n~~FE~g-~~gW~~~g~~~~~~~~--~~~G~~~l~vt~Rt~~w~G~~~~v----~l----~~G~~Y---~~SawVk~~~ 90 (551)
..-+||++ -..|.....++|+.+. ...|++||+=+=. .|....| .+ ..++.+ +|++||+-..
T Consensus 8 ~~~~Fe~~vp~~~~~~~~s~LslS~~hyK~G~~SL~W~w~----~gs~l~i~~~~~~~~~~~~~k~~g~~~~~~WIYNe~ 83 (178)
T PF09092_consen 8 RMFDFENQVPDAFTTSQGSTLSLSDEHYKDGKQSLKWNWQ----PGSTLTISKPLGFEPDAPTSKDGGRSAFIFWIYNEK 83 (178)
T ss_dssp CEC-SSSTTTTCTEEECCEEEEEESSS-SSTT-EEEEEEE----CCEEEEEES-B----HHCCCCHHTCCEEEEEEEESS
T ss_pred eeeccccCCCcceEecCCceEEeCHhHhhCCccccEEEcC----CCCEEEEecccccccccccccccCcceEEEEEECCC
Confidence 34589988 5678888778888775 4589999985321 1233333 33 122333 3999999765
Q ss_pred C-CceEEEEEEeCC---CeeEEceeEEEeC----CCeEEEEeEEEeCCC-C---cEEEEEEeC--CCceeEEEecccccc
Q 008838 91 G-SDTVAAVFKTSD---GKLIDAGKVLAKH----GCWSLLKGGLAANFT-S---LVEILFESK--NAEMEIWADSVSLQP 156 (551)
Q Consensus 91 g-s~~~~~~l~~~~---g~~~~~~~~~~~~----~~Wt~l~g~~t~~~~-~---~~~iy~e~~--~~~~d~~vDdvsl~~ 156 (551)
. ...+++.|.... |...+.-.....- ++|+.+...+.-... + --.|.|..| ...+.+|+|-+.+..
T Consensus 84 p~~~~l~f~F~~~~~~t~~~~~~F~~~LNFtGWR~~WV~y~~Dm~g~~~~g~~~md~l~i~AP~~~~~G~lf~D~l~~~~ 163 (178)
T PF09092_consen 84 PQDDKLRFEFGKGLINTGKPCYWFPFNLNFTGWRAAWVSYERDMQGRPEEGSKDMDSLRITAPANDPSGTLFFDRLIFSV 163 (178)
T ss_dssp --SSEEEEEEECT--TTTEECEEEEEE---SEEEEEEEETTTTSEE---TT-----EEEEE--TTSSEEEEEEEEEEEEE
T ss_pred CcCCeEEEEecCCcccCCccceEEEEEeecccceeeeeeehhhccCCcccCcceeeEEEEEccccCCCccEEEEEEeecc
Confidence 4 345777776642 4422211222222 345544432221111 2 345777777 788999999998864
Q ss_pred c
Q 008838 157 F 157 (551)
Q Consensus 157 ~ 157 (551)
.
T Consensus 164 ~ 164 (178)
T PF09092_consen 164 K 164 (178)
T ss_dssp E
T ss_pred c
Confidence 3
No 64
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=83.55 E-value=1.5 Score=45.33 Aligned_cols=58 Identities=22% Similarity=0.139 Sum_probs=34.5
Q ss_pred HHHHHHHHCCceEEEeEeeecCCCCCCc-cccCCCHHHHHHHHHHHHHHHHHhcCCc--eEEEEeecccccc
Q 008838 256 AMLQFCEKNGISVRGHNIFWDNSKQQPS-WVKKLSPEELREAAAKRINSVTSRYAGK--LIAWDVVNENLHF 324 (551)
Q Consensus 256 ~~v~~a~~~gi~vrGH~LvW~~~~~~P~-W~~~~~~~~~~~~~~~~i~~v~~rY~g~--i~~WDVvNE~~~~ 324 (551)
.+|+.....||.+--.+ |. =+. +-...+.....++++-+..|... |..-=|-||.+..
T Consensus 38 ~iL~a~a~S~i~v~v~v---------pN~~l~--~la~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~ 98 (310)
T PF00332_consen 38 SILRAFAGSGIEVMVGV---------PNEDLA--SLASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTG 98 (310)
T ss_dssp HHHHHHTTS--EEEEEE----------GGGHH--HHHHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCC
T ss_pred HHHHHHhcCCceeeecc---------ChHHHH--HhccCHHHHhhhhhhcccccCcccceeeeecccccccC
Confidence 67777777888875332 21 111 12234456677888877777764 9999999998653
No 65
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=78.35 E-value=51 Score=30.66 Aligned_cols=135 Identities=12% Similarity=0.108 Sum_probs=82.5
Q ss_pred CCCChHHHHHH----HccCceeeeCCCCCCc-cccccCC---ccc---hhhhHHHHHHHHHCCceEEEeEeeecCCCCCC
Q 008838 214 ILTSTEYQNWF----ASRFKYTTFTNQMKWY-STEKIQG---EEN---YTIADAMLQFCEKNGISVRGHNIFWDNSKQQP 282 (551)
Q Consensus 214 ~~~~~~~~~~~----~~~Fn~~t~eN~~kW~-~~Ep~~G---~~~---~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P 282 (551)
.++...+++.+ .-+++.+++-....-+ ...|... .+. -+..+.+++.|.++||+|.-.+ .. .|
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl--~~----~~ 89 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGL--YF----DP 89 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeC--CC----Cc
Confidence 34445555554 4578888763222211 1233333 111 1346899999999999996432 21 35
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHhcCC--ceEEEEeeccccccCccccccchHHHHHHHHHHhccCCCceEEEecCC
Q 008838 283 SWVKKLSPEELREAAAKRINSVTSRYAG--KLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYN 358 (551)
Q Consensus 283 ~W~~~~~~~~~~~~~~~~i~~v~~rY~g--~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~ 358 (551)
.|....+++...+.-..-++++..+|+. .+..|=+-.|+...+ |.. ++..+..-+.+++..|+..+.|--|.
T Consensus 90 ~~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-~~~---~~~~~~l~~~lk~~s~~~Pv~ISpf~ 163 (166)
T PF14488_consen 90 DYWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-WNA---PERFALLGKYLKQISPGKPVMISPFI 163 (166)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc-cch---HHHHHHHHHHHHHhCCCCCeEEecCc
Confidence 6666444443222223346777888886 599999999986544 432 46667777888889898888886653
No 66
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=76.16 E-value=5.3 Score=35.76 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=35.3
Q ss_pred eeeeeCCCceEEEeeeeeeEEEEEEeccceeEEEEEEEecCCCCCce
Q 008838 498 LEATTDMKGFFEFSLFHGEYNLTVKHSVTHALTSISFKVTKHLPQRT 544 (551)
Q Consensus 498 ~~~~td~~G~~~~~~f~G~y~v~v~~~~~~~~~~~~~~~~~~~~~~~ 544 (551)
.+..|++.|.|.|....|.|.|++...+.+...-=.+.|.+++.+.+
T Consensus 39 as~~t~~~G~Ys~~~epG~Y~V~l~~~g~~~~~vG~I~V~~dS~pGT 85 (134)
T PF08400_consen 39 ASVVTGEAGEYSFDVEPGVYRVTLKVEGRPPVYVGDITVYEDSKPGT 85 (134)
T ss_pred EEEEcCCCceEEEEecCCeEEEEEEECCCCceeEEEEEEecCCCCCc
Confidence 35688999999999999999999998754433333566666666554
No 67
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=74.63 E-value=6.4 Score=38.82 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcC-----CceEEEEeeccccc-----cCcccccc-chHHHHHHH---HHHhccCCCceEEE
Q 008838 296 AAAKRINSVTSRYA-----GKLIAWDVVNENLH-----FRFFEDNL-GENASAEFY---RIAHQLDPNTIMFL 354 (551)
Q Consensus 296 ~~~~~i~~v~~rY~-----g~i~~WDVvNE~~~-----~~~~~~~~-g~d~~~~af---~~Ar~~dP~a~L~~ 354 (551)
.+.++|.-++.+|+ +.|..|-+=|||.. ...-.+.+ -++++.+.+ +++|++||+|+++=
T Consensus 105 y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~G 177 (239)
T PF12891_consen 105 YMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFG 177 (239)
T ss_dssp EHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEee
Confidence 35556777777765 45999999999973 11111122 235555544 45677899999984
No 68
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=73.32 E-value=5.1 Score=29.11 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.8
Q ss_pred ceEEEEecCCCcccCCCeEEEEE
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQ 199 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~ 199 (551)
.++|.+.|++|.|+|++.+.|..
T Consensus 16 ~ltVt~kda~G~pv~n~~f~l~r 38 (47)
T PF05688_consen 16 PLTVTVKDANGNPVPNAPFTLTR 38 (47)
T ss_pred EEEEEEECCCCCCcCCceEEEEe
Confidence 58889999999999998887753
No 69
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=72.71 E-value=26 Score=37.37 Aligned_cols=93 Identities=19% Similarity=0.306 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHCCceEEE-eE-eeecCCCCCCccccC----C---CHHHHHHH---HHHHHHHHHHhcCCceEEEEeec
Q 008838 252 TIADAMLQFCEKNGISVRG-HN-IFWDNSKQQPSWVKK----L---SPEELREA---AAKRINSVTSRYAGKLIAWDVVN 319 (551)
Q Consensus 252 ~~~D~~v~~a~~~gi~vrG-H~-LvW~~~~~~P~W~~~----~---~~~~~~~~---~~~~i~~v~~rY~g~i~~WDVvN 319 (551)
+..-.+.+.|+++||++-- |. +-||. |.|... . ..+...+. +...|++++++|+..+.-+|...
T Consensus 128 Div~el~~A~rk~Glk~G~Y~S~~DW~~----p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 128 DLVGELADAVRKRGLKFGLYHSLFDWFN----PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred chHHHHHHHHHHcCCeEEEEcCHHHhCC----CccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 5567899999999999832 11 22442 443211 0 11222333 48899999999998777778644
Q ss_pred cccccCccccccchHHHHHHHHHHhccCCCc-eEEEec
Q 008838 320 ENLHFRFFEDNLGENASAEFYRIAHQLDPNT-IMFLNE 356 (551)
Q Consensus 320 E~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a-~L~~Nd 356 (551)
+... ..| -....++.+|+..|++ .+++|+
T Consensus 204 ~~~~-~~~-------~~~~l~~~~~~~qP~~~~vvvn~ 233 (384)
T smart00812 204 EAPD-DYW-------RSKEFLAWLYNLSPVKDTVVVND 233 (384)
T ss_pred CCcc-chh-------cHHHHHHHHHHhCCCCceEEEEc
Confidence 3211 111 2456788889999987 556664
No 70
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=71.91 E-value=19 Score=29.10 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=31.0
Q ss_pred eeeeeCCCceEEEeeeeeeEEEEEEeccceeEEEEEEEecC
Q 008838 498 LEATTDMKGFFEFSLFHGEYNLTVKHSVTHALTSISFKVTK 538 (551)
Q Consensus 498 ~~~~td~~G~~~~~~f~G~y~v~v~~~~~~~~~~~~~~~~~ 538 (551)
....||++|.|.+..-.|+|.|.+++-+ =..+++.+.+.+
T Consensus 27 ~~~~Td~~G~F~i~~~~g~~~l~is~~G-y~~~~~~i~~~~ 66 (88)
T PF13715_consen 27 KGTVTDENGRFSIKLPEGDYTLKISYIG-YETKTITISVNS 66 (88)
T ss_pred ceEEECCCeEEEEEEcCCCeEEEEEEeC-EEEEEEEEEecC
Confidence 3578999999999998999999999874 234555565544
No 71
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=71.18 E-value=21 Score=31.59 Aligned_cols=13 Identities=15% Similarity=0.774 Sum_probs=11.1
Q ss_pred EEEEEEEEEEcCC
Q 008838 79 LYSFSAWIQVSRG 91 (551)
Q Consensus 79 ~Y~~SawVk~~~g 91 (551)
.+++|||||+.+.
T Consensus 2 ~fTv~aWv~~~~~ 14 (133)
T smart00560 2 SFTLEAWVKLESA 14 (133)
T ss_pred cEEEEEEEeeccc
Confidence 5899999999864
No 72
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=69.72 E-value=42 Score=34.70 Aligned_cols=141 Identities=15% Similarity=0.068 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHH-hcCC----ceEEEEeeccccccCccccccchHHHHHHHHHHhccCCCceEEEe-cCCccccch
Q 008838 291 EELREAAAKRINSVTS-RYAG----KLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLN-EYNTIELAA 364 (551)
Q Consensus 291 ~~~~~~~~~~i~~v~~-rY~g----~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~N-dy~~~~~~~ 364 (551)
++.++.|.+++..++. -|.| .++.|.-+++..........---++++...+.||+..|+++|+.| ++..++..
T Consensus 143 ~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~- 221 (315)
T TIGR01370 143 PEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDD- 221 (315)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhcc-
Confidence 4567788888877754 4555 566666666542111110000015677777888999999999875 33322100
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCC--CCCH---HHHHHHHHHHhhCCCCEEEeeecCCCCc--chH
Q 008838 365 DKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSD--QPDI---AYMRSVLDILGSTGLPIWLTEVDVDIGP--NQS 437 (551)
Q Consensus 365 ~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~--~p~~---~~i~~~L~~~a~~glpI~iTEldv~~~~--~QA 437 (551)
. .. + ...+|||+..+=+... ..+. ..+...|+++...|+||.+.|+--+... ...
T Consensus 222 --~---g~-------~------~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~ 283 (315)
T TIGR01370 222 --H---GG-------L------AATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDGTKTNENP 283 (315)
T ss_pred --c---cc-------h------hhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCcccchhhH
Confidence 0 00 1 1247888888744322 1222 2344566777778999999999765321 223
Q ss_pred HHHHHHHHHHHcC
Q 008838 438 QYLEEILREAYAH 450 (551)
Q Consensus 438 ~~~~~~~~~~~s~ 450 (551)
...+++.+.|.++
T Consensus 284 ~~~~~~~~~~~~~ 296 (315)
T TIGR01370 284 ARMKDAAEKARAA 296 (315)
T ss_pred HHHHHHHHHHHHc
Confidence 4456666666653
No 73
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=68.91 E-value=28 Score=31.16 Aligned_cols=91 Identities=15% Similarity=0.328 Sum_probs=57.4
Q ss_pred HHHHHH-HccCceeee--C--CCCCC--ccccccCCccchhhhHHHHHHHHHCCceEEEeE-eeecCCC--CCCccccCC
Q 008838 219 EYQNWF-ASRFKYTTF--T--NQMKW--YSTEKIQGEENYTIADAMLQFCEKNGISVRGHN-IFWDNSK--QQPSWVKKL 288 (551)
Q Consensus 219 ~~~~~~-~~~Fn~~t~--e--N~~kW--~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~-LvW~~~~--~~P~W~~~~ 288 (551)
.+.+.+ ..+-|++++ . +.+-| ..+.++......+..-++++.|.++||+|-+.. +.|+..- .-|+|+...
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~~ 83 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVRD 83 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeEC
Confidence 345555 458888888 2 22222 233333233345566789999999999997775 3465431 368998520
Q ss_pred ---C-----------------HHHHHHHHHHHHHHHHHhcC
Q 008838 289 ---S-----------------PEELREAAAKRINSVTSRYA 309 (551)
Q Consensus 289 ---~-----------------~~~~~~~~~~~i~~v~~rY~ 309 (551)
. ....++.+...|+++++||.
T Consensus 84 ~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 84 ADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred CCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 0 12356888899999999995
No 74
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=68.30 E-value=68 Score=32.41 Aligned_cols=216 Identities=14% Similarity=0.215 Sum_probs=108.3
Q ss_pred CChHHHHHHHccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeE-e--------eecCC--CCCCcc
Q 008838 216 TSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHN-I--------FWDNS--KQQPSW 284 (551)
Q Consensus 216 ~~~~~~~~~~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~-L--------vW~~~--~~~P~W 284 (551)
.+..+.++..++|..++.+ -.+ +.|.-+.+.- .=|.-.+++|..+..-. + .|..+ ...|+|
T Consensus 32 ~d~~~~~i~~~~f~llVVD--ps~--~g~~~~~~~~----eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~w 103 (300)
T COG2342 32 QDAYINEILNSPFDLLVVD--PSY--CGPFNTPWTI----EELRTKADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPDW 103 (300)
T ss_pred ccchHHHHhcCCCcEEEEe--ccc--cCCCCCcCcH----HHHHHHhcCCeeEEEEEechhhhhhhhHhhhhhhcCCccc
Confidence 4666778888999999983 222 3333333222 33566777884332211 1 12211 137888
Q ss_pred ccCCCH------------HHHHHHHHHHHHHHHH-hcCCceEEEEeeccccccCccccccc-------hHHHHHHHHHHh
Q 008838 285 VKKLSP------------EELREAAAKRINSVTS-RYAGKLIAWDVVNENLHFRFFEDNLG-------ENASAEFYRIAH 344 (551)
Q Consensus 285 ~~~~~~------------~~~~~~~~~~i~~v~~-rY~g~i~~WDVvNE~~~~~~~~~~~g-------~d~~~~af~~Ar 344 (551)
+-..+| ++-++.+..+...+.. -|.|- .-|+|-.---.-......| ..++...-.++|
T Consensus 104 Lg~edP~W~Gny~VkYW~~eWkdii~~~l~rL~d~GfdGv--yLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~r 181 (300)
T COG2342 104 LGEEDPEWPGNYAVKYWEPEWKDIIRSYLDRLIDQGFDGV--YLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYAR 181 (300)
T ss_pred ccCCCCCCCCCceeeccCHHHHHHHHHHHHHHHHccCceE--EEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 876543 2456666666666654 24442 2233332100000011111 134566677889
Q ss_pred ccCCCceEEEec-CCccccchhhhhhHHHHHHHHHHHhcCCCCCCcc-cEEEecccCCCCCCCHHHHHHHHHHHhhCCCC
Q 008838 345 QLDPNTIMFLNE-YNTIELAADKESNAVNYKKKIDEILSYPGNAGMS-LGIGLQGHFSSDQPDIAYMRSVLDILGSTGLP 422 (551)
Q Consensus 345 ~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~i-DgIG~Q~H~~~~~p~~~~i~~~L~~~a~~glp 422 (551)
++.|...++.|- =..++..+ ..++.-.+.|+.+ +-++--. ....+....++.|+++.++|+|
T Consensus 182 a~~~~~~Vi~qng~~l~d~~~-------------a~l~~~~~~~~~vE~~~~d~~---~~~~~~~~~e~~Lr~l~~~G~~ 245 (300)
T COG2342 182 AANPLFRVIPQNGAELFDADG-------------AGLLPRLGFGVAVETVFYDDE---RPLESADTFEEYLRKLCRLGKP 245 (300)
T ss_pred hcCCcEEEEecccHhhcCccc-------------cchhhccccceEEEEEEecCc---cCCCchhhHHHHHHHHHhcCCc
Confidence 999996665542 11121110 0011101123333 2211111 1111234566899999999999
Q ss_pred EEEeeecCCCCcchHHHHHHHHHHHHcCCCeeEEEEEec
Q 008838 423 IWLTEVDVDIGPNQSQYLEEILREAYAHPAVKGIISFSG 461 (551)
Q Consensus 423 I~iTEldv~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~ 461 (551)
|.+-|.+.......-.-+++++..++ +.|+.....
T Consensus 246 V~vieY~~d~~~~~~~r~~~~~~ktr----~~g~~p~~~ 280 (300)
T COG2342 246 VYVIEYALDPTDPRESRLEDLFEKTR----AEGVYPYVA 280 (300)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhh----ccceEEeee
Confidence 99999988654322255566665544 455554443
No 75
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=64.14 E-value=44 Score=34.98 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHCCceEEEeEe--eecCCCCCCccccCC-C-----------HH-HHHHHHHHHHHHHHHhcCCceEEEE
Q 008838 252 TIADAMLQFCEKNGISVRGHNI--FWDNSKQQPSWVKKL-S-----------PE-ELREAAAKRINSVTSRYAGKLIAWD 316 (551)
Q Consensus 252 ~~~D~~v~~a~~~gi~vrGH~L--vW~~~~~~P~W~~~~-~-----------~~-~~~~~~~~~i~~v~~rY~g~i~~WD 316 (551)
+..-++++.|+++||++--+.- -||.+ .+.... . .+ ...+.+...++++++||.-.+.-+|
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~dw~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPWDWHHP----DYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESSSCCCT----TTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEEEecchHhcCc----ccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 4456899999999999843322 23322 221111 0 01 2345788999999999954566677
Q ss_pred eeccccccCccccccchHHHHHHHHHHhccCCCceEEEe
Q 008838 317 VVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLN 355 (551)
Q Consensus 317 VvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~N 355 (551)
...... ...--....++.+|+..|++.+.-+
T Consensus 214 g~~~~~--------~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 214 GGWPDP--------DEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp STTSCC--------CTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred CCCCcc--------ccccCHHHHHHHHHHhCCeEEEecc
Confidence 765541 1111237889999999998777654
No 76
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=59.84 E-value=1.2e+02 Score=26.39 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=37.7
Q ss_pred eeccCCCEEEEEEEEEEcCCCceEEEEEEeCCCeeEEceeEEEe-CC---CeEEEEeEEEeCCC-CcEEEEEEeCCCcee
Q 008838 72 VQLEKGKLYSFSAWIQVSRGSDTVAAVFKTSDGKLIDAGKVLAK-HG---CWSLLKGGLAANFT-SLVEILFESKNAEME 146 (551)
Q Consensus 72 v~l~~G~~Y~~SawVk~~~gs~~~~~~l~~~~g~~~~~~~~~~~-~~---~Wt~l~g~~t~~~~-~~~~iy~e~~~~~~d 146 (551)
|.+.....|+|++.+.-..+...+.+.+-..+|+.. ++..++ .+ .|+.++....+... ..+.+.+.+++.
T Consensus 47 vd~~~~g~~~i~~~~as~~~~~~i~v~~d~~~G~~~--~~~~~p~tg~~~~~~~~~~~v~~~~G~~~l~~~~~~~~~--- 121 (129)
T smart00606 47 VDFGSSGAYTFTARVASGNAGGSIELRLDSPTGTLV--GTVDVPSTGGWQTYQTVSATVTLPAGVHDVYLVFKGGNY--- 121 (129)
T ss_pred EecCCCCceEEEEEEeCCCCCceEEEEECCCCCcEE--EEEEeCCCCCCccCEEEEEEEccCCceEEEEEEEECCCc---
Confidence 566666889999877544333334333322235433 222222 33 35566555444332 234444444322
Q ss_pred EEEeccc
Q 008838 147 IWADSVS 153 (551)
Q Consensus 147 ~~vDdvs 153 (551)
+.||.+.
T Consensus 122 ~~ld~~~ 128 (129)
T smart00606 122 FNIDWFR 128 (129)
T ss_pred EEEEEEE
Confidence 6677654
No 77
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=59.44 E-value=1.2e+02 Score=27.14 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=52.0
Q ss_pred ee-eccCCCEEEEEEEEEEcC-CCceEEEEEEeCCCeeEEceeEEEeCCCeEEEEeEEEeCCCC-cEEEEEEeCCCceeE
Q 008838 71 KV-QLEKGKLYSFSAWIQVSR-GSDTVAAVFKTSDGKLIDAGKVLAKHGCWSLLKGGLAANFTS-LVEILFESKNAEMEI 147 (551)
Q Consensus 71 ~v-~l~~G~~Y~~SawVk~~~-gs~~~~~~l~~~~g~~~~~~~~~~~~~~Wt~l~g~~t~~~~~-~~~iy~e~~~~~~d~ 147 (551)
+| .|++|++|+++.-+.... ++..+++.|.+..|+. ++....... +..|+.|... .-.|-+-+ .+..+|
T Consensus 46 ~LPlLk~G~~Y~l~~~~~~~P~~svylki~F~dr~~e~--i~~~i~k~~-----~~~F~yP~~aysY~I~Lin-aG~~~l 117 (128)
T PF15432_consen 46 SLPLLKRGHTYQLKFNIDVVPENSVYLKIIFFDRQGEE--IEEQIIKND-----SFEFTYPEEAYSYTISLIN-AGCQSL 117 (128)
T ss_pred CCCEecCCCEEEEEEEEEEccCCeEEEEEEEEccCCCE--eeEEEEecC-----ceEEeCCCCceEEEEEEee-CCCCee
Confidence 45 899999999999998875 4667999988766542 233333333 4778888763 44444444 355666
Q ss_pred EEecccccc
Q 008838 148 WADSVSLQP 156 (551)
Q Consensus 148 ~vDdvsl~~ 156 (551)
-+.+++|.+
T Consensus 118 ~F~~i~I~e 126 (128)
T PF15432_consen 118 TFHSIEISE 126 (128)
T ss_pred EEeEEEEEE
Confidence 677777654
No 78
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=57.14 E-value=12 Score=30.88 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.5
Q ss_pred ccceEEEEecCCCcccCCCeEEEEEecCC
Q 008838 175 KRKVRFQLTSANKTALEGAVVSVTQIKSD 203 (551)
Q Consensus 175 k~~~~i~v~d~~g~p~~ga~v~v~~~~~~ 203 (551)
...++++|.|.+|+|+|+..|++.....+
T Consensus 19 ~~~i~v~v~D~~Gnpv~~~~V~f~~~~~~ 47 (92)
T smart00634 19 AITLTATVTDANGNPVAGQEVTFTTPSGG 47 (92)
T ss_pred cEEEEEEEECCCCCCcCCCEEEEEECCCc
Confidence 34688999999999999999888755444
No 79
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=56.92 E-value=1.1e+02 Score=25.24 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=40.9
Q ss_pred EEEEEEEEEEcCCCceEEEEEEeCCCeeEEceeEEE--eCCCeEEEEeEEEeCCC----CcEEEEEEeCC
Q 008838 79 LYSFSAWIQVSRGSDTVAAVFKTSDGKLIDAGKVLA--KHGCWSLLKGGLAANFT----SLVEILFESKN 142 (551)
Q Consensus 79 ~Y~~SawVk~~~gs~~~~~~l~~~~g~~~~~~~~~~--~~~~Wt~l~g~~t~~~~----~~~~iy~e~~~ 142 (551)
.++|+...+.-+ +++.+.+++++|.....+.+++ ..++|-..+++..++.. +.+.+|..++.
T Consensus 17 p~~V~G~A~~FE--gtv~~rv~D~~g~vl~e~~~~a~~g~~~~g~F~~tv~~~~~~~~~g~l~v~~~s~~ 84 (88)
T PF10648_consen 17 PVKVSGKARVFE--GTVNIRVRDGHGEVLAEGFVTATGGAPSWGPFEGTVSFPPPPPGKGTLEVFEDSAK 84 (88)
T ss_pred CEEEEEEEEEee--eEEEEEEEcCCCcEEEEeeEEeccCCCcccceEEEEEeCCCCCCceEEEEEEeCCC
Confidence 566777766554 4577777787776554454444 46779888887777642 46777776653
No 80
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=55.88 E-value=48 Score=29.22 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=32.5
Q ss_pred EEEeEEEeCCCCcEEEEEEeCCCceeEEEeccccccccc
Q 008838 121 LLKGGLAANFTSLVEILFESKNAEMEIWADSVSLQPFTK 159 (551)
Q Consensus 121 ~l~g~~t~~~~~~~~iy~e~~~~~~d~~vDdvsl~~~~~ 159 (551)
+++|.|+++.++..++++.+ +.+..++||+-.+.....
T Consensus 49 ~~~G~~~~~~~G~y~f~~~~-~d~~~l~idg~~vid~~~ 86 (145)
T PF07691_consen 49 RWTGYFKPPETGTYTFSLTS-DDGARLWIDGKLVIDNWG 86 (145)
T ss_dssp EEEEEEEESSSEEEEEEEEE-SSEEEEEETTEEEEECSC
T ss_pred EEEEEEecccCceEEEEEEe-cccEEEEECCEEEEcCCc
Confidence 67999999999999999986 678999999999976543
No 81
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=55.60 E-value=82 Score=36.97 Aligned_cols=76 Identities=16% Similarity=0.300 Sum_probs=55.1
Q ss_pred HccCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEee-ecCCCCCCccccCCCHHHHHHHHHHHHHH
Q 008838 225 ASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIF-WDNSKQQPSWVKKLSPEELREAAAKRINS 303 (551)
Q Consensus 225 ~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~Lv-W~~~~~~P~W~~~~~~~~~~~~~~~~i~~ 303 (551)
..++|+++.- .++ ....++++|.+.||-|-=-+.+ ||. .| ..++.++.+...|+.
T Consensus 332 ~~n~N~vRts--HyP-------------~~~~~ydLcDelGllV~~Ea~~~~~~---~~------~~~~~~k~~~~~i~~ 387 (808)
T COG3250 332 EANMNSVRTS--HYP-------------NSEEFYDLCDELGLLVIDEAMIETHG---MP------DDPEWRKEVSEEVRR 387 (808)
T ss_pred HcCCCEEEec--CCC-------------CCHHHHHHHHHhCcEEEEecchhhcC---CC------CCcchhHHHHHHHHH
Confidence 3589999982 222 3368899999999988655543 333 22 233456678888999
Q ss_pred HHHhcCC--ceEEEEeecccccc
Q 008838 304 VTSRYAG--KLIAWDVVNENLHF 324 (551)
Q Consensus 304 v~~rY~g--~i~~WDVvNE~~~~ 324 (551)
+++|-+. .|..|=+-||..+.
T Consensus 388 mver~knHPSIiiWs~gNE~~~g 410 (808)
T COG3250 388 MVERDRNHPSIIIWSLGNESGHG 410 (808)
T ss_pred HHHhccCCCcEEEEeccccccCc
Confidence 9998776 79999999997653
No 82
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=54.46 E-value=42 Score=35.39 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=50.6
Q ss_pred eccCCceeEEEeeCCCCCCccee-----eeeccCCCEEEEEEEEEEcCCCceEEEEEEeCCCeeEEceeEEEeCCCeEEE
Q 008838 48 TSEEGNKYIVAHSRTNPLDSFSQ-----KVQLEKGKLYSFSAWIQVSRGSDTVAAVFKTSDGKLIDAGKVLAKHGCWSLL 122 (551)
Q Consensus 48 ~~~~G~~~l~vt~Rt~~w~G~~~-----~v~l~~G~~Y~~SawVk~~~gs~~~~~~l~~~~g~~~~~~~~~~~~~~Wt~l 122 (551)
.++.|..||+.++--+.-..--. ++.+..++..+|+..-+.. ..|.+.|.+..++.+.+.....-+.+|+.=
T Consensus 436 ~aynGGnSLKfsgdl~~~~~~nv~Ly~t~L~i~~~tk~~v~~k~~~g---lKV~~~f~~~pd~f~~~d~~K~l~~nW~~e 512 (553)
T COG4724 436 DAYNGGNSLKFSGDLAGKTDQNVRLYSTKLEITEKTKLRVAHKGGKG---LKVYMAFSTTPDKFDDADAWKELSDNWTNE 512 (553)
T ss_pred hhcCCCcceeeeeccccCCccceEEEeeceeeecCceEEEEeecCCc---eEEEEEEecCCccccchhhhhhhcccchhh
Confidence 46889999998876333222111 2256677777766543211 235555666555654332222225566644
Q ss_pred EeEEEeCCC---CcEEEEEEeCCCcee
Q 008838 123 KGGLAANFT---SLVEILFESKNAEME 146 (551)
Q Consensus 123 ~g~~t~~~~---~~~~iy~e~~~~~~d 146 (551)
+-....-+. -.+.||||....-.|
T Consensus 513 ~~~l~~~~g~~i~av~l~~e~~~~v~d 539 (553)
T COG4724 513 EFDLSSLAGKTIYAVKLFFEHEGAVKD 539 (553)
T ss_pred heehhhccCceEEEEEEEEeccCceee
Confidence 433322222 257899997544333
No 83
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=53.26 E-value=33 Score=33.65 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=30.3
Q ss_pred ceeeeeCCCceE-EEeeeeeeEEEEEEeccc---eeEEEEEEEecCCCCCceeE
Q 008838 497 ALEATTDMKGFF-EFSLFHGEYNLTVKHSVT---HALTSISFKVTKHLPQRTTN 546 (551)
Q Consensus 497 ~~~~~td~~G~~-~~~~f~G~y~v~v~~~~~---~~~~~~~~~~~~~~~~~~~~ 546 (551)
+...-...||.| ....|.|+|+|....+.. ...-|+.++++ ++...+++
T Consensus 58 ~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~dti~v~i~-G~t~~d~e 110 (222)
T PF12866_consen 58 PQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPVDTIEVDIK-GNTTQDFE 110 (222)
T ss_dssp SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE--EEEEES-SCEEEEEE
T ss_pred CcceEEccCCceeeeeEeccceEEEEcCCCCcccCCCccEEEEec-CceEEeEE
Confidence 445677889999 999999999999954422 34556666666 33344443
No 84
>PRK09936 hypothetical protein; Provisional
Probab=53.00 E-value=2.7e+02 Score=28.47 Aligned_cols=158 Identities=11% Similarity=0.241 Sum_probs=83.0
Q ss_pred CCChHHHHHH----HccCceeeeCCCCCCccccccCCccchhhhH----HHHHHHHHCCceEEEeEeeecCCCCCCcccc
Q 008838 215 LTSTEYQNWF----ASRFKYTTFTNQMKWYSTEKIQGEENYTIAD----AMLQFCEKNGISVRGHNIFWDNSKQQPSWVK 286 (551)
Q Consensus 215 ~~~~~~~~~~----~~~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D----~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~ 286 (551)
+.+..++.++ ..+|+.+.. -|..+ |.-+|...| +.++.|.+.||+|+-. +. .-|.|+.
T Consensus 35 ~~~~qWq~~~~~~~~~G~~tLiv----QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG--L~----~Dp~y~q 100 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQGFDTLVV----QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG--LY----ADPEFFM 100 (296)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE----Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc--cc----CChHHHH
Confidence 3444555554 458998886 67665 222565544 6788999999999533 22 2578877
Q ss_pred CC--CHHHHHHHHHHHHHHHH-------HhcCCceEEEEeeccccccCccccccchHHHHHHHHHHhccCC--CceEEEe
Q 008838 287 KL--SPEELREAAAKRINSVT-------SRYAGKLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDP--NTIMFLN 355 (551)
Q Consensus 287 ~~--~~~~~~~~~~~~i~~v~-------~rY~g~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP--~a~L~~N 355 (551)
.. +++.+...+..+...-. ++.+-.|..|=+==|...- -|.+.--.+.+....+.+.+.-| +..|.|.
T Consensus 101 ~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~-~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~IS 179 (296)
T PRK09936 101 HQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDL-NWRDEARRQPLLTWLNAAQRLIDVSAKPVHIS 179 (296)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchh-cccCHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 54 44454444444433333 3333345667776665432 24332222333344444444433 4566666
Q ss_pred cCCccccchhhhhhHHHHHHHHHHHhcCCCCCCc--c-cEEEec
Q 008838 356 EYNTIELAADKESNAVNYKKKIDEILSYPGNAGM--S-LGIGLQ 396 (551)
Q Consensus 356 dy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~--i-DgIG~Q 396 (551)
-|..-. .++..+-..+..+.. .+.. + ||+|..
T Consensus 180 ay~~g~------~sP~~l~~Wl~~l~~---~~l~V~~QDGvGv~ 214 (296)
T PRK09936 180 AFFAGN------MSPDGYRQWLEQLKA---TGVNVWVQDGSGVD 214 (296)
T ss_pred eecccC------CChHHHHHHHHHHhh---cCCeEEEEcCCCcc
Confidence 664211 123445444555544 3433 3 777774
No 85
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=46.98 E-value=1.8e+02 Score=29.78 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHhhC--CCCEEEeeecCCCCc--chHHHHHHHHHH
Q 008838 371 VNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGST--GLPIWLTEVDVDIGP--NQSQYLEEILRE 446 (551)
Q Consensus 371 ~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~~--glpI~iTEldv~~~~--~QA~~~~~~~~~ 446 (551)
..|..+++.|.+ . .+|.|-+.. .|++.+++.+++..... ++|+|++ |.+.... .-..-+++++..
T Consensus 140 ~~~~~q~~~l~~---~--gvD~i~~ET-----~~~~~E~~~~~~~~~~~~~~~pv~is-~~~~~~g~l~~G~~~~~~~~~ 208 (304)
T PRK09485 140 DFHRPRIEALAE---A--GADLLACET-----IPNLDEAEALVELLKEEFPGVPAWLS-FTLRDGTHISDGTPLAEAAAL 208 (304)
T ss_pred HHHHHHHHHHhh---C--CCCEEEEec-----cCCHHHHHHHHHHHHHhcCCCcEEEE-EEeCCCCcCCCCCCHHHHHHH
Confidence 445556666644 2 388887743 26778888888887755 8999998 4454320 011234444444
Q ss_pred HHcCCCeeEE
Q 008838 447 AYAHPAVKGI 456 (551)
Q Consensus 447 ~~s~p~v~gi 456 (551)
+.+++.+.+|
T Consensus 209 l~~~~~~~~i 218 (304)
T PRK09485 209 LAASPQVVAV 218 (304)
T ss_pred HhcCCCceEE
Confidence 4444444444
No 86
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=46.81 E-value=21 Score=28.32 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=18.5
Q ss_pred eEEEEecCCCcccCCCeEEEEEecCCC
Q 008838 178 VRFQLTSANKTALEGAVVSVTQIKSDF 204 (551)
Q Consensus 178 ~~i~v~d~~g~p~~ga~v~v~~~~~~F 204 (551)
++=.|.|++|+|++||.|.+.......
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~ 28 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGT 28 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCC
Confidence 344688999999999999986544443
No 87
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=46.33 E-value=1.3e+02 Score=34.23 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=53.8
Q ss_pred cCCceeEEEeeCCC-CCCcceeeeeccCCCEEEEEE--EEEEcCCCceEEEE-EEeCCC-eeEEc-eeE-------EEeC
Q 008838 50 EEGNKYIVAHSRTN-PLDSFSQKVQLEKGKLYSFSA--WIQVSRGSDTVAAV-FKTSDG-KLIDA-GKV-------LAKH 116 (551)
Q Consensus 50 ~~G~~~l~vt~Rt~-~w~G~~~~v~l~~G~~Y~~Sa--wVk~~~gs~~~~~~-l~~~~g-~~~~~-~~~-------~~~~ 116 (551)
++|+++.. +++.. ..+.+...|.|..+..=+|++ |..+..+-..+.+. +..+.| ++... +.. ...+
T Consensus 338 ~~G~~~w~-Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk~wydIE~dyDy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~s 416 (645)
T PF05547_consen 338 ASGSYAWY-SGSGDDLNNTLTRSVDLPAASSATLSFKAWYDIEADYDYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGSS 416 (645)
T ss_pred CCCceEEE-ECCCcchhhheeeeeccCCCCCeEEEeehheecccCCceEEEEEEEcCCCceeEecCccccccCCCCCCCc
Confidence 55554433 33322 233455555565554444555 44444444445555 333333 23221 111 1124
Q ss_pred CCeEEEEeEEEeCCCCcEEEEEE--eC--CCceeEEEecccccc
Q 008838 117 GCWSLLKGGLAANFTSLVEILFE--SK--NAEMEIWADSVSLQP 156 (551)
Q Consensus 117 ~~Wt~l~g~~t~~~~~~~~iy~e--~~--~~~~d~~vDdvsl~~ 156 (551)
+.|+.++-..+.-+...+.|-|+ +. -...-||||||+|..
T Consensus 417 g~Wv~~~~DLSayAGqtV~LrFrY~TD~~v~~~G~~vDdi~v~~ 460 (645)
T PF05547_consen 417 GGWVDASFDLSAYAGQTVQLRFRYVTDGGVAGRGFYVDDIRVTA 460 (645)
T ss_pred cceeEeEeccccccCCeEEEEEEEEcCCCccCCcEEEEEEEEEE
Confidence 67998887766555555555444 32 234459999999963
No 88
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=46.18 E-value=40 Score=35.26 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=59.2
Q ss_pred HHHHHHHHCCceEEEeEee-ecCCCCCCccccCC--CHHHHHHHHHHHHHHHHHhcCCceEEEEeecccccc-Ccccccc
Q 008838 256 AMLQFCEKNGISVRGHNIF-WDNSKQQPSWVKKL--SPEELREAAAKRINSVTSRYAGKLIAWDVVNENLHF-RFFEDNL 331 (551)
Q Consensus 256 ~~v~~a~~~gi~vrGH~Lv-W~~~~~~P~W~~~~--~~~~~~~~~~~~i~~v~~rY~g~i~~WDVvNE~~~~-~~~~~~~ 331 (551)
..++.|.+||++|.|-.++ |.. .++|+..+ ++++.+..+.+-+-+++..|+ ++.|-|-=|.... ....+.+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~---~~~~~~~lL~~~~~~~~~~a~kLv~lak~yG--fDGw~iN~E~~~~~~~~~~~l 124 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTG---QVEWLEDFLKKDEDGSFPVADKLVEVAKYYG--FDGWLINIETELGDAEKAKRL 124 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCC---chHHHHHHhccCcccchHHHHHHHHHHHHhC--CCceEeeeeccCCcHHHHHHH
Confidence 6788999999999995432 331 34566543 225556667777788888884 6667776665431 1111111
Q ss_pred chHHHHHHHHHHhccCCCceEEE
Q 008838 332 GENASAEFYRIAHQLDPNTIMFL 354 (551)
Q Consensus 332 g~d~~~~af~~Ar~~dP~a~L~~ 354 (551)
.++++...+.+++..|+.+++.
T Consensus 125 -~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 125 -IAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred -HHHHHHHHHHHhhcCCCcEEEE
Confidence 2456777788888889888865
No 89
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=44.73 E-value=3.8e+02 Score=27.75 Aligned_cols=230 Identities=11% Similarity=0.053 Sum_probs=98.5
Q ss_pred HHHHc-cCceeeeCCCCCCccccccCCccchhhhHHHHHHHHHCCceEEEeEeeecCCCCCCc-cccCCCH-HHHHHHHH
Q 008838 222 NWFAS-RFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPS-WVKKLSP-EELREAAA 298 (551)
Q Consensus 222 ~~~~~-~Fn~~t~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~-W~~~~~~-~~~~~~~~ 298 (551)
.+|++ +.|.++. +.+.|.. ..|+-++.+.+.||-|.--. + .|. =+...+| ..--..+.
T Consensus 60 ~~l~~LgiNtIRV------Y~vdp~~------nHd~CM~~~~~aGIYvi~Dl----~---~p~~sI~r~~P~~sw~~~l~ 120 (314)
T PF03198_consen 60 PLLKELGINTIRV------YSVDPSK------NHDECMSAFADAGIYVILDL----N---TPNGSINRSDPAPSWNTDLL 120 (314)
T ss_dssp HHHHHHT-SEEEE------S---TTS--------HHHHHHHHHTT-EEEEES--------BTTBS--TTS------HHHH
T ss_pred HHHHHcCCCEEEE------EEeCCCC------CHHHHHHHHHhCCCEEEEec----C---CCCccccCCCCcCCCCHHHH
Confidence 34543 7899999 7788876 34899999999999884321 1 341 1111233 22334455
Q ss_pred HHHHHHHHhcCC--ceEEEEeeccccccCccccccchHHHHHHHHHHh----ccCC-CceEEEecCCccccchhhhhhHH
Q 008838 299 KRINSVTSRYAG--KLIAWDVVNENLHFRFFEDNLGENASAEFYRIAH----QLDP-NTIMFLNEYNTIELAADKESNAV 371 (551)
Q Consensus 299 ~~i~~v~~rY~g--~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar----~~dP-~a~L~~Ndy~~~~~~~~~~~~~~ 371 (551)
++...++..+++ .+-..=+-||.++...=. .-.-|++.+.|=+| +... .+.+- |..-+.. +. +
T Consensus 121 ~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t--~aap~vKAavRD~K~Yi~~~~~R~IPVG---YsaaD~~-~~---r- 190 (314)
T PF03198_consen 121 DRYFAVIDAFAKYDNTLGFFAGNEVINDASNT--NAAPYVKAAVRDMKAYIKSKGYRSIPVG---YSAADDA-EI---R- 190 (314)
T ss_dssp HHHHHHHHHHTT-TTEEEEEEEESSS-STT-G--GGHHHHHHHHHHHHHHHHHSSS----EE---EEE---T-TT---H-
T ss_pred HHHHHHHHHhccCCceEEEEecceeecCCCCc--ccHHHHHHHHHHHHHHHHhcCCCCCcee---EEccCCh-hH---H-
Confidence 666666665553 577888999987643111 12345555544333 3232 23332 3321111 00 0
Q ss_pred HHHHHHHHHhcCCCCCCcccEEEecccCCCCCCCH--HHHHHHHHHHhhCCCCEEEeeecCCCCc-----chHHHHHHHH
Q 008838 372 NYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDI--AYMRSVLDILGSTGLPIWLTEVDVDIGP-----NQSQYLEEIL 444 (551)
Q Consensus 372 ~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~--~~i~~~L~~~a~~glpI~iTEldv~~~~-----~QA~~~~~~~ 444 (551)
..+...|.= -.....+|=.|+-.+-.++..+. ......++.|+...+||.++|++-.... ++...|..-|
T Consensus 191 --~~~a~Yl~C-g~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~y~vPvffSEyGCn~~~pR~f~ev~aly~~~M 267 (314)
T PF03198_consen 191 --QDLANYLNC-GDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSNYSVPVFFSEYGCNTVTPRTFTEVPALYSPEM 267 (314)
T ss_dssp --HHHHHHTTB-TT-----S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHH
T ss_pred --HHHHHHhcC-CCcccccceeeeccceecCCCccccccHHHHHHHhhCCCCCeEEcccCCCCCCCccchHhHHhhCccc
Confidence 111122211 00123578777766555542232 2367888999999999999999976532 2233333333
Q ss_pred HHHHcCCCeeEEEEEecccCCCCCccccccCCC----CCChhHHHHHHHH
Q 008838 445 REAYAHPAVKGIISFSGPAIAGFKVMPLADKDF----KNTPAGDVVDKLL 490 (551)
Q Consensus 445 ~~~~s~p~v~gi~~Wg~~d~~g~~~~~L~d~d~----~pKPa~~~~~~l~ 490 (551)
.-.|| |=+.+.+... ..+.||++-+- ++.+-|..|++-+
T Consensus 268 t~v~S-----GGivYEy~~e--~n~yGlV~~~~~~~~~~~~Df~~L~~~~ 310 (314)
T PF03198_consen 268 TDVWS-----GGIVYEYFQE--ANNYGLVEISGDGSVTTLDDFDNLKSQY 310 (314)
T ss_dssp HTTEE-----EEEES-SB----SSS--SEEE-TTS-EEE-THHHHHHHHH
T ss_pred hhhee-----ceEEEEEecc--CCceEEEEEcCCCCeeecHhHHHHHHHH
Confidence 32222 2234554422 23567765432 2455666665544
No 90
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=44.70 E-value=2.3e+02 Score=25.38 Aligned_cols=37 Identities=8% Similarity=0.206 Sum_probs=25.3
Q ss_pred EEEeEEEeCCCC--cEEEEEEeCCCceeEEEeccccccc
Q 008838 121 LLKGGLAANFTS--LVEILFESKNAEMEIWADSVSLQPF 157 (551)
Q Consensus 121 ~l~g~~t~~~~~--~~~iy~e~~~~~~d~~vDdvsl~~~ 157 (551)
++...|+++... .+.|+++.......+|||.+.+.|+
T Consensus 104 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~v~IDkIEFIPv 142 (143)
T PF03944_consen 104 EFPTPFTFSSNQSITITISIQNISSNGNVYIDKIEFIPV 142 (143)
T ss_dssp EESSEEEESTSEEEEEEEEEESSTTTS-EEEEEEEEEEC
T ss_pred ecCceEEecCCCceEEEEEEEecCCCCeEEEEeEEEEeC
Confidence 344567776543 4667777655569999999999875
No 91
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=42.46 E-value=22 Score=29.96 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.0
Q ss_pred ccceEEEEecCCCcccCCCeEEE
Q 008838 175 KRKVRFQLTSANKTALEGAVVSV 197 (551)
Q Consensus 175 k~~~~i~v~d~~g~p~~ga~v~v 197 (551)
+..+++.|.|..|+||+|..|..
T Consensus 24 ~~tltatV~D~~gnpv~g~~V~f 46 (100)
T PF02369_consen 24 TNTLTATVTDANGNPVPGQPVTF 46 (100)
T ss_dssp -EEEEEEEEETTSEB-TS-EEEE
T ss_pred cEEEEEEEEcCCCCCCCCCEEEE
Confidence 34688899999999999999887
No 92
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=42.12 E-value=1.6e+02 Score=25.65 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=30.0
Q ss_pred EEEeEEEeCCCCcEEEEEEeCCCceeEEEecccccc
Q 008838 121 LLKGGLAANFTSLVEILFESKNAEMEIWADSVSLQP 156 (551)
Q Consensus 121 ~l~g~~t~~~~~~~~iy~e~~~~~~d~~vDdvsl~~ 156 (551)
.++|.++++.++.-++++.+ +....++||+-.+..
T Consensus 47 ~~~g~i~~~~~G~y~f~~~~-~~~~~l~Idg~~vid 81 (136)
T smart00758 47 RWTGYLKPPEDGEYTFSITS-DDGARLWIDGKLVID 81 (136)
T ss_pred EEEEEEECCCCccEEEEEEc-CCcEEEEECCcEEEc
Confidence 67899999999888999976 688999999988764
No 93
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=41.76 E-value=4.5e+02 Score=27.85 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=60.4
Q ss_pred HHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHhh
Q 008838 339 FYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGS 418 (551)
Q Consensus 339 af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~ 418 (551)
+|..++++--+-++-.=+|+.... ...|.+.| + ..+.|=+-+|..+-.. .-......|+.-++
T Consensus 132 ~~df~~kak~eGkIr~~GFSfHgs-------~e~~~~iv----~----a~~~dfvqlq~ny~d~--~n~~~~~~l~~A~~ 194 (391)
T COG1453 132 VFDFLEKAKAEGKIRNAGFSFHGS-------TEVFKEIV----D----AYPWDFVQLQYNYIDQ--KNQAGTEGLKYAAS 194 (391)
T ss_pred hHHHHHHHHhcCcEEEeeecCCCC-------HHHHHHHH----h----cCCcceEEeeeeeecc--chhcccHHHHHHHh
Confidence 466666655555665556664321 23333332 2 4468888777655432 11122466777778
Q ss_pred CCCCEEEeee-cCCC----CcchHH-----------HHHHHHHHHHcCCCeeEEEEEeccc
Q 008838 419 TGLPIWLTEV-DVDI----GPNQSQ-----------YLEEILREAYAHPAVKGIISFSGPA 463 (551)
Q Consensus 419 ~glpI~iTEl-dv~~----~~~QA~-----------~~~~~~~~~~s~p~v~gi~~Wg~~d 463 (551)
.|++|-|-|= +=.. .+.-++ -.+..++-+++||.|.-+ +=|...
T Consensus 195 ~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~v-lsGm~~ 254 (391)
T COG1453 195 KGLGIFIMEPLDGGGLLYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTV-LSGMNT 254 (391)
T ss_pred CCCcEEEEeeCCCCCcccCCCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEE-ecCCCC
Confidence 9999999882 2110 111111 245667888999999887 455543
No 94
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=40.95 E-value=4e+02 Score=26.99 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=83.6
Q ss_pred hHHHHHHHHHCCceEEEeEeeecCCCCCCccccCCCHHHHHHHHHHHHHHHHHhcC--CceEEEEeeccccccCcc-ccc
Q 008838 254 ADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYA--GKLIAWDVVNENLHFRFF-EDN 330 (551)
Q Consensus 254 ~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~rY~--g~i~~WDVvNE~~~~~~~-~~~ 330 (551)
...+...+++.|+++.- -+|.. |+ +...+++-|..-..-|. +.|...-|=||.+.++.- ...
T Consensus 89 le~v~pAa~~~g~kv~l--Giw~t----dd---------~~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasq 153 (305)
T COG5309 89 LENVLPAAEASGFKVFL--GIWPT----DD---------IHDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQ 153 (305)
T ss_pred hhhhHHHHHhcCceEEE--EEeec----cc---------hhhhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHH
Confidence 34677788999988742 25643 22 11222222222222333 368888999999865522 122
Q ss_pred cchHHHHHHHHHHhccCCCceEEEec-CCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCC-CC--CH
Q 008838 331 LGENASAEFYRIAHQLDPNTIMFLNE-YNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSD-QP--DI 406 (551)
Q Consensus 331 ~g~d~~~~af~~Ar~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~-~p--~~ 406 (551)
++ +|+...=...++++=+.++.--| ++.+... ...++. -|=|+...|..-. .+ +.
T Consensus 154 l~-~~I~~vrsav~~agy~gpV~T~dsw~~~~~n-------p~l~~~-------------SDfia~N~~aYwd~~~~a~~ 212 (305)
T COG5309 154 LI-EYIDDVRSAVKEAGYDGPVTTVDSWNVVINN-------PELCQA-------------SDFIAANAHAYWDGQTVANA 212 (305)
T ss_pred HH-HHHHHHHHHHHhcCCCCceeecccceeeeCC-------hHHhhh-------------hhhhhcccchhccccchhhh
Confidence 32 56655544555555444432211 1111111 111111 1444454453221 11 11
Q ss_pred --HHHHHHHHHHh-h--CCCCEEEeeecCCCC-----------cchHHHHHHHHHHHHcC
Q 008838 407 --AYMRSVLDILG-S--TGLPIWLTEVDVDIG-----------PNQSQYLEEILREAYAH 450 (551)
Q Consensus 407 --~~i~~~L~~~a-~--~glpI~iTEldv~~~-----------~~QA~~~~~~~~~~~s~ 450 (551)
.-+...|+++- . ..+++||||.++++. +.|++++++++-.+++.
T Consensus 213 ~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~ 272 (305)
T COG5309 213 AGTFLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC 272 (305)
T ss_pred hhHHHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc
Confidence 12334477753 2 238999999999983 58999999998877664
No 95
>PHA01740 putative single-stranded DNA-binding protein
Probab=38.80 E-value=1.1e+02 Score=27.29 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCCeeeec----c--eeEEEe----eccCCceeEEEeeCCCCCCcceeee-eccCCCEEEEEEEEEEcC
Q 008838 33 TEGWTAFG----Q--AAIREA----TSEEGNKYIVAHSRTNPLDSFSQKV-QLEKGKLYSFSAWIQVSR 90 (551)
Q Consensus 33 ~~gW~~~g----~--~~~~~~----~~~~G~~~l~vt~Rt~~w~G~~~~v-~l~~G~~Y~~SawVk~~~ 90 (551)
++||...+ + ..|+.+ ....|+.-|.+- |...-..|...= ..-.|.+|.+|+|-|-..
T Consensus 39 ~SGW~~~~~~~~~e~isLsLt~K~~~~~~g~g~l~~n-k~~~~krPD~~G~V~leG~~~~IS~Wkk~~k 106 (158)
T PHA01740 39 LAGWRQEDFMSDDHYISLSLTGKDDASLTGSGRLENN-RDKIGNRPDMVGRVIVEGAEYEISAWTKTHD 106 (158)
T ss_pred eecccccccccCCceeEEEeccccchhhcCceeeeec-cccccCCCCceeeEEEcceEEEEEEEEeccc
Confidence 57887655 1 134433 234576667664 766666666544 456899999999998876
No 96
>PF03424 CBM_17_28: Carbohydrate binding domain (family 17/28); InterPro: IPR005086 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. CBM17 from CAZY binds to amorphous cellulose and soluble beta-1,4-glucans, with a minimal binding requirement of cellotriose and optimal affinity for cellohexaose. Family 17 CBMs appear to have a very shallow binding cleft that may be more accessible to cellulose chains in non-crystalline cellulose than the deeper binding clefts of family 4 CBMs []. CBM28 from CAZY does not compete with CBM17 modules when binding to non-crystalline cellulose but does have a "beta-jelly roll" topology, which is similar in structure to the CBM17 domains. Sequence and structural conservation in families 17 and 28 suggests that they have evolved through gene duplication and subsequent divergence []. This entry includes family 17 and 28 which show structural homology. The domain is found in a number of alkaline cellulases.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 3ACI_A 3ACH_A 3ACF_A 3ACG_A 1J83_B 1J84_A 1UWW_A 1G0C_A 1G01_A.
Probab=38.35 E-value=1.1e+02 Score=29.32 Aligned_cols=42 Identities=19% Similarity=0.419 Sum_probs=19.9
Q ss_pred CcCCC-CCCeeeecce---eEEEeeccCCceeEE--Eee---CCCCCCcce
Q 008838 28 EFNRG-TEGWTAFGQA---AIREATSEEGNKYIV--AHS---RTNPLDSFS 69 (551)
Q Consensus 28 ~FE~g-~~gW~~~g~~---~~~~~~~~~G~~~l~--vt~---Rt~~w~G~~ 69 (551)
+||+| .+||.-.+.+ .|....+..|.+.+- +.+ +...|..+.
T Consensus 40 dFeDGTrQGw~wn~dS~k~~ltIenaN~~ska~s~~~~n~~~~~d~WAnar 90 (204)
T PF03424_consen 40 DFEDGTRQGWGWNGDSGKTALTIENANNGSKALSWEVSNDKPEGDYWANAR 90 (204)
T ss_dssp S-TTSS-TTEEE-TT-S-S--EEEEETTTEEEEEEEE-SS-SSSSTTTTCE
T ss_pred cccCCceecccccCCCCccceEEecccccceeeecccCCCCCCCCCceeee
Confidence 59999 8999887643 244444444444333 332 345666544
No 97
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=37.72 E-value=50 Score=34.50 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=39.7
Q ss_pred CCCCCCcc---eeeeeccCCCEEEEEEEEEEcC-CCceEEEEEEeCCCeeEEceeEEEeCCCeEEEEeEE
Q 008838 61 RTNPLDSF---SQKVQLEKGKLYSFSAWIQVSR-GSDTVAAVFKTSDGKLIDAGKVLAKHGCWSLLKGGL 126 (551)
Q Consensus 61 Rt~~w~G~---~~~v~l~~G~~Y~~SawVk~~~-gs~~~~~~l~~~~g~~~~~~~~~~~~~~Wt~l~g~~ 126 (551)
|..+|-+- .+.+.|+.|.+|.|..-+|--- |.-.+-..+...++.. .+.+|.|..|+|++
T Consensus 87 R~~t~lng~~~~~S~~LelG~dYefkv~lkaR~pG~~hvh~m~Nv~~~Gp------iiGPg~w~~I~Gs~ 150 (399)
T TIGR03079 87 RLSTKVNGMPVFISGPLEIGRDYEFEVTLQARIPGRHHMHAMLNVKDAGP------IAGPGKWMNITGSW 150 (399)
T ss_pred EeeEEECCEeecceeEeecCCceeEEEEEeeccCCcccceeEEEeccCCC------CcCCceEEEeecch
Confidence 44555432 2345899999999999888764 4445555555444332 24578999999964
No 98
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=37.23 E-value=1.3e+02 Score=30.68 Aligned_cols=47 Identities=11% Similarity=0.330 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHhhCCCCEEEeeecCCC
Q 008838 375 KKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDI 432 (551)
Q Consensus 375 ~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~~glpI~iTEldv~~ 432 (551)
..|+.+.+ +| +|-+|+.. .|+..+.+..++...++++|.||+ +.+..
T Consensus 138 ~rie~l~~---ag--~Dlla~ET-----ip~i~Ea~Aiv~l~~~~s~p~wIS-fT~~d 184 (300)
T COG2040 138 PRIEALNE---AG--ADLLACET-----LPNITEAEAIVQLVQEFSKPAWIS-FTLND 184 (300)
T ss_pred HHHHHHHh---CC--CcEEeecc-----cCChHHHHHHHHHHHHhCCceEEE-EEeCC
Confidence 45776766 44 89988743 277788888888888889999999 65553
No 99
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=36.99 E-value=3.3e+02 Score=34.75 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=75.1
Q ss_pred eccCCCEEEEEEEEEEcCCC-----ceEEEEEEeCCCeeEEceeEEEeCCCeEEEEeEEEeCCC---C--cEEEEEEe--
Q 008838 73 QLEKGKLYSFSAWIQVSRGS-----DTVAAVFKTSDGKLIDAGKVLAKHGCWSLLKGGLAANFT---S--LVEILFES-- 140 (551)
Q Consensus 73 ~l~~G~~Y~~SawVk~~~gs-----~~~~~~l~~~~g~~~~~~~~~~~~~~Wt~l~g~~t~~~~---~--~~~iy~e~-- 140 (551)
.-.||.+..+++-+|...+. .++++.+...+|..+....... ++=--...+|+++.+ + .+++++.+
T Consensus 404 lYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~--~~~G~~~~~~~l~~na~tG~w~l~~~~~~~~ 481 (1621)
T COG2373 404 LYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITL--DEEGLYELSFPLPENALTGGYTLELYTGGKS 481 (1621)
T ss_pred cCCCCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEec--cccCceEEeeeCCCCCCcceEEEEEEeCCcc
Confidence 44799999999999998763 3488888888886443322222 222245667777765 3 46666654
Q ss_pred CCCceeEEEeccccccc------cccccccccchhhhhhhccceEEEEecCCCcccCCCeEE--EE--Ee------cCCC
Q 008838 141 KNAEMEIWADSVSLQPF------TKEQWRSHQDKSINKERKRKVRFQLTSANKTALEGAVVS--VT--QI------KSDF 204 (551)
Q Consensus 141 ~~~~~d~~vDdvsl~~~------~~~~w~~~a~~~ie~~Rk~~~~i~v~d~~g~p~~ga~v~--v~--~~------~~~F 204 (551)
.-...+|-|.|+.--.+ ....|..- + .-++.|.+....|.|+.|.+++ +. .. -..|
T Consensus 482 ~~~s~~f~V~df~p~r~~i~l~~~k~~~~~g------~--~v~~~v~~~yL~GaPa~g~~~~~~l~lr~~~~~~~~~~~~ 553 (1621)
T COG2373 482 AVISMSFRVEDFIPDRFKINLTLDKTEWVPG------K--DVKIKVDLRYLYGAPAAGLTVQGELDLRPTRFSVPGFPGF 553 (1621)
T ss_pred ceeeeeEEhhHhCCceEEEecccccccccCC------C--cEEEEEEEEecCCCcccCceeeeEEEeecccccccCCcce
Confidence 24567777766543221 11222221 1 1234455667789999998776 32 22 2456
Q ss_pred ceEEe
Q 008838 205 PFGCG 209 (551)
Q Consensus 205 ~fG~a 209 (551)
.||-+
T Consensus 554 ~fg~~ 558 (1621)
T COG2373 554 TFGLA 558 (1621)
T ss_pred eeecc
Confidence 77765
No 100
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=36.64 E-value=30 Score=32.86 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=19.4
Q ss_pred ceEEEEecCCCcccCCCeEEEEEe
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQI 200 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~ 200 (551)
.+..+|.|.+|+||+||.|.|=|.
T Consensus 31 ~l~G~V~D~~g~Pv~~A~veiWqa 54 (183)
T PF00775_consen 31 VLHGRVIDTDGKPVPGALVEIWQA 54 (183)
T ss_dssp EEEEEEEETTSSB-TTEEEEEEE-
T ss_pred EEEEEEECCCCCCCCCcEEEEEec
Confidence 467789999999999999999664
No 101
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=35.96 E-value=39 Score=34.20 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCCEEEeeecCCCC------------------------------cchHHHHHHHHHHHHc
Q 008838 420 GLPIWLTEVDVDIG------------------------------PNQSQYLEEILREAYA 449 (551)
Q Consensus 420 glpI~iTEldv~~~------------------------------~~QA~~~~~~~~~~~s 449 (551)
.+|||+||++.++- -.|.++++.++.....
T Consensus 206 sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 206 SKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred CcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 58999999998750 2588888888876654
No 102
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=35.25 E-value=5.8e+02 Score=27.23 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=99.3
Q ss_pred CCceEEEeEeeecCCCCCCccccCC------------CHHHHHHHHHHHHHHHHHhcCC-ceEEEEe--eccccccC--c
Q 008838 264 NGISVRGHNIFWDNSKQQPSWVKKL------------SPEELREAAAKRINSVTSRYAG-KLIAWDV--VNENLHFR--F 326 (551)
Q Consensus 264 ~gi~vrGH~LvW~~~~~~P~W~~~~------------~~~~~~~~~~~~i~~v~~rY~g-~i~~WDV--vNE~~~~~--~ 326 (551)
.++++.. --|. .|.|++.- ..+...+.+.+|+-...+.|.. .|..|-+ =|||-.++ .
T Consensus 192 ~~lklfA--sPWs----aPgWlKttg~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPstG~d~~ 265 (518)
T KOG2566|consen 192 GNLKLFA--SPWS----APGWLKTTGRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPSTGSDKK 265 (518)
T ss_pred CCceEEe--cCCC----CCceeeecccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCceEEeecccCCCCcCcccC
Confidence 4555543 3365 68999741 2235677888888888888864 5777765 58886543 1
Q ss_pred cc-cccc------hHHHHHHHHHHhc---cCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEec
Q 008838 327 FE-DNLG------ENASAEFYRIAHQ---LDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQ 396 (551)
Q Consensus 327 ~~-~~~g------~d~~~~af~~Ar~---~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q 396 (551)
|. +.+| .|+++.-.-=|-+ .--++||+++|=+-..-+ .+.+.| +.-|.+..-++||++|
T Consensus 266 ~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~knvkllilDD~Rg~LP--------~Wadtv---lnDpeAakYv~GIaVH 334 (518)
T KOG2566|consen 266 WKWQTLGFTAETQRDFIKKDLGPALASSKTTKNVKLLILDDQRGLLP--------HWADTV---LNDPEAAKYVHGIAVH 334 (518)
T ss_pred CceeecccCHHHHHHHHHHhcchhhhcCCcCCceEEEEecCCccCCC--------ccchhh---ccChhhhhhccceEEE
Confidence 21 2233 3455443322222 344899999885432211 222221 1111123357999996
Q ss_pred ccCCCCCCCHHHHHHHHHHHhh--CCCCEEEeeecCCC----------CcchHHHHHHHHHHHHcCCCeeEEEEEecc-c
Q 008838 397 GHFSSDQPDIAYMRSVLDILGS--TGLPIWLTEVDVDI----------GPNQSQYLEEILREAYAHPAVKGIISFSGP-A 463 (551)
Q Consensus 397 ~H~~~~~p~~~~i~~~L~~~a~--~glpI~iTEldv~~----------~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~-d 463 (551)
.+.... ++.. .|+.-.. .+.=|.-||--... -.+..+|..+++.-.-.| |.|-+=|++. |
T Consensus 335 wY~df~--~pa~---~L~eTh~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~--vtGWtdwNl~Ld 407 (518)
T KOG2566|consen 335 WYQDFL--EPAK---HLDETHRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNH--VTGWTDWNLILD 407 (518)
T ss_pred eecccc--Chhh---hhhhHHhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhh--ccceeeeeeEec
Confidence 655432 2221 3443322 12345666643322 135567888888877665 9999999974 5
Q ss_pred CCC
Q 008838 464 IAG 466 (551)
Q Consensus 464 ~~g 466 (551)
+.|
T Consensus 408 ~~G 410 (518)
T KOG2566|consen 408 AQG 410 (518)
T ss_pred CcC
Confidence 443
No 103
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=35.12 E-value=1.8e+02 Score=27.65 Aligned_cols=15 Identities=7% Similarity=0.372 Sum_probs=12.7
Q ss_pred CCCEEEEEEEEEEcC
Q 008838 76 KGKLYSFSAWIQVSR 90 (551)
Q Consensus 76 ~G~~Y~~SawVk~~~ 90 (551)
+=..+|+++|||+..
T Consensus 29 ~l~~fTv~~Wv~~~~ 43 (201)
T cd00152 29 PLQAFTLCLWVYTDL 43 (201)
T ss_pred ChhhEEEEEEEEecC
Confidence 567899999999976
No 104
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=34.28 E-value=40 Score=31.21 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.0
Q ss_pred ceEEEEecCCCcccCCCeEEEEEec
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIK 201 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~ 201 (551)
.++.+|.|.+|+||+||.|.|=|..
T Consensus 17 ~l~g~V~D~~g~Pv~~A~veiWqad 41 (158)
T cd03459 17 ILEGRVLDGDGRPVPDALVEIWQAD 41 (158)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccC
Confidence 4667899999999999999996643
No 105
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=32.83 E-value=5e+02 Score=26.08 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=14.5
Q ss_pred CccchhhhHHHHHHHHHCCce
Q 008838 247 GEENYTIADAMLQFCEKNGIS 267 (551)
Q Consensus 247 G~~~~~~~D~~v~~a~~~gi~ 267 (551)
|..|++...++++|..++|+.
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~ 35 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGID 35 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCc
Confidence 566777777777777776654
No 106
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=32.06 E-value=1.7e+02 Score=25.37 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=38.8
Q ss_pred EEEEEEeCCCee-EEceeEEEeCCCeEEEEeEEEeCCCCcEEEEEEeCCCceeEEEeccccccccccccccccchhhhhh
Q 008838 95 VAAVFKTSDGKL-IDAGKVLAKHGCWSLLKGGLAANFTSLVEILFESKNAEMEIWADSVSLQPFTKEQWRSHQDKSINKE 173 (551)
Q Consensus 95 ~~~~l~~~~g~~-~~~~~~~~~~~~Wt~l~g~~t~~~~~~~~iy~e~~~~~~d~~vDdvsl~~~~~~~w~~~a~~~ie~~ 173 (551)
+.+.|. .+|+. +.++ ..|||.+..|+|++... .+.+-+.. ++.+ +..+|.+..+++
T Consensus 36 ~~leF~-~dGKL~v~~g----nng~~~~~~Gty~L~G~-kLtL~~~p--~g~t-~k~~Vtv~~l~~-------------- 92 (111)
T TIGR03066 36 VVIEFA-KDGKLVVTIG----EKGKEVKADGTYKLDGN-KLTLTLKA--GGKE-KKETLTVKKLTD-------------- 92 (111)
T ss_pred eEEEEc-CCCeEEEecC----CCCcEeccCceEEEECC-EEEEEEcC--CCcc-ccceEEEEEecC--------------
Confidence 444444 35553 2333 37899999999999974 33333232 2222 124554443332
Q ss_pred hccceEEEEecCCCcccC
Q 008838 174 RKRKVRFQLTSANKTALE 191 (551)
Q Consensus 174 Rk~~~~i~v~d~~g~p~~ 191 (551)
=.+.+.|++|+++.
T Consensus 93 ----~~Lvl~d~dg~~~~ 106 (111)
T TIGR03066 93 ----DELVGKDPDGKKDT 106 (111)
T ss_pred ----CeEEEEcCCCCEeE
Confidence 24667888887653
No 107
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=31.82 E-value=3.2e+02 Score=23.44 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=12.9
Q ss_pred CCEEEEEEEEEEcCC
Q 008838 77 GKLYSFSAWIQVSRG 91 (551)
Q Consensus 77 G~~Y~~SawVk~~~g 91 (551)
...++|++|||....
T Consensus 21 ~~~fTi~~w~~~~~~ 35 (157)
T PF13385_consen 21 SGSFTISFWVKPDSP 35 (157)
T ss_dssp GTEEEEEEEEEESS-
T ss_pred CCCEEEEEEEEeCCC
Confidence 789999999999875
No 108
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=31.41 E-value=2.9e+02 Score=27.44 Aligned_cols=91 Identities=16% Similarity=0.289 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHHCCceEEEeEeeecCCCCCCcccc------CCCHHHHHHHHHHHHH---HHHHhcCCceEEEEeecccc
Q 008838 252 TIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVK------KLSPEELREAAAKRIN---SVTSRYAGKLIAWDVVNENL 322 (551)
Q Consensus 252 ~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~------~~~~~~~~~~~~~~i~---~v~~rY~g~i~~WDVvNE~~ 322 (551)
....+.++.|+++|+.+=.|+- .|+-.. .++++++++.+..-|. .++...+.++.+.--
T Consensus 42 ~~M~~tv~lA~~~gV~iGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a~~~g~~l~hVKP----- 109 (242)
T PF03746_consen 42 ETMRRTVRLAKEHGVAIGAHPS-------YPDREGFGRRSMDISPEELRDSVLYQIGALQAIAAAEGVPLHHVKP----- 109 (242)
T ss_dssp HHHHHHHHHHHHTT-EEEEE----------S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHTT--EEEE-------
T ss_pred HHHHHHHHHHHHcCCEeccCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEecc-----
Confidence 4567899999999999999974 344321 2478888887776655 456777777765421
Q ss_pred ccCcccccc-chHHHHHHHHHHhccCCCceEEE
Q 008838 323 HFRFFEDNL-GENASAEFYRIAHQLDPNTIMFL 354 (551)
Q Consensus 323 ~~~~~~~~~-g~d~~~~af~~Ar~~dP~a~L~~ 354 (551)
|+..+.... .++..+...+++++.+|+..|+.
T Consensus 110 HGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~ 142 (242)
T PF03746_consen 110 HGALYNMAAKDEELARAIAEAIKAFDPDLPLYG 142 (242)
T ss_dssp -HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEE
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 332222111 23556677889999999999887
No 109
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.50 E-value=49 Score=31.47 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=21.0
Q ss_pred ceEEEEecCCCcccCCCeEEEEEec
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIK 201 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~ 201 (551)
.++.+|.|.+|+||+||.|.|=|..
T Consensus 38 ~l~G~V~D~~g~Pi~gA~VeiWqad 62 (185)
T cd03463 38 TLEGRVYDGDGAPVPDAMLEIWQAD 62 (185)
T ss_pred EEEEEEECCCCCCCCCCEEEEEcCC
Confidence 4667799999999999999996643
No 110
>PRK11354 kil FtsZ inhibitor protein; Reviewed
Probab=30.39 E-value=87 Score=24.69 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=35.2
Q ss_pred eEEEeCCCeEEEEe-EEEeCCC--CcEEEEEEeCCCceeEEEeccccccccccccccccchhhhhhhccceEEEE-ecCC
Q 008838 111 KVLAKHGCWSLLKG-GLAANFT--SLVEILFESKNAEMEIWADSVSLQPFTKEQWRSHQDKSINKERKRKVRFQL-TSAN 186 (551)
Q Consensus 111 ~~~~~~~~Wt~l~g-~~t~~~~--~~~~iy~e~~~~~~d~~vDdvsl~~~~~~~w~~~a~~~ie~~Rk~~~~i~v-~d~~ 186 (551)
...+++|.-++-.| +|+..+. ..-.||+.+. ||+.|-.|..|+| +|..
T Consensus 13 Rq~V~PG~~v~~~grty~ASAN~~~r~~LYl~~~----------------------------~e~~~i~d~~IeVyL~~~ 64 (73)
T PRK11354 13 RQCVTPGDYVLHEGRTYIASANNIKKRKLYIRTL----------------------------TTKTCITDCMIKVFLGRD 64 (73)
T ss_pred ccccCCceEEEEcCcEEEEEechhhCceEEEEee----------------------------eEEEEEeeeEEEEEEcCC
Confidence 34566777777777 6677665 4556776641 4566667777776 5888
Q ss_pred CcccC
Q 008838 187 KTALE 191 (551)
Q Consensus 187 g~p~~ 191 (551)
|.|+.
T Consensus 65 G~Plt 69 (73)
T PRK11354 65 GLPVK 69 (73)
T ss_pred CCccc
Confidence 88874
No 111
>PRK07534 methionine synthase I; Validated
Probab=30.35 E-value=2.8e+02 Score=28.93 Aligned_cols=86 Identities=7% Similarity=0.074 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhccCCC---ceEEEecCCcccc----ch--hhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCCCC
Q 008838 334 NASAEFYRIAHQLDPN---TIMFLNEYNTIEL----AA--DKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQP 404 (551)
Q Consensus 334 d~~~~af~~Ar~~dP~---a~L~~Ndy~~~~~----~~--~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p 404 (551)
++.+.+.+.||++.-+ -.++..+.+.... .. +.......|..+++.|.+ . .+|.|.+.. .|
T Consensus 85 ~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~~qi~~l~~---~--gvD~l~~ET-----~p 154 (336)
T PRK07534 85 ELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFHEQAEGLKA---G--GADVLWVET-----IS 154 (336)
T ss_pred HHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHHHHHHHHHh---C--CCCEEEEec-----cC
Confidence 4567778878776421 1234343322110 00 111233556666776655 2 378887632 27
Q ss_pred CHHHHHHHHHHHhhCCCCEEEeeecC
Q 008838 405 DIAYMRSVLDILGSTGLPIWLTEVDV 430 (551)
Q Consensus 405 ~~~~i~~~L~~~a~~glpI~iTEldv 430 (551)
+..+++.+++.+...++|+|++ |.+
T Consensus 155 ~l~E~~a~~~~~~~~~~Pv~vS-ft~ 179 (336)
T PRK07534 155 APEEIRAAAEAAKLAGMPWCGT-MSF 179 (336)
T ss_pred CHHHHHHHHHHHHHcCCeEEEE-EEE
Confidence 7888988888888889999987 444
No 112
>PF13115 YtkA: YtkA-like
Probab=29.93 E-value=74 Score=25.57 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=20.0
Q ss_pred ceEEEEecCCCcccCCCeEEEEEecC
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIKS 202 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~~ 202 (551)
++.|. .+.+|+||.+|.|++.-...
T Consensus 23 ~i~v~-~~~~g~pv~~a~V~~~~~m~ 47 (86)
T PF13115_consen 23 TITVT-VDQGGKPVTDADVQFEIWMP 47 (86)
T ss_pred EEEEE-ECCCCCCCCCCEEEEEEEeC
Confidence 56777 78999999999988876544
No 113
>PF02383 Syja_N: SacI homology domain; InterPro: IPR002013 Synaptic vesicles are recycled with remarkable speed and precision in nerve terminals. A major recycling pathway involves clathrin-mediated endocytosis at endocytic zones located around sites of release. Different 'accessory' proteins linked to this pathway have been shown to alter the shape and composition of lipid membranes, to modify membrane-coat protein interactions, and to influence actin polymerisation. These include the GTPase dynamin, the lysophosphatidic acid acyl transferase endophilin, and the phosphoinositide phosphatase synaptojanin []. The recessive suppressor of secretory defect in yeast Golgi and yeast actin function belongs to this family. This protein may be involved in the coordination of the activities of the secretory pathway and the actin cytoskeleton. Human synaptojanin which may be localised on coated endocytic intermediates in nerve terminals also belongs to this family.; GO: 0042578 phosphoric ester hydrolase activity; PDB: 3LWT_X.
Probab=29.71 E-value=1.4e+02 Score=30.65 Aligned_cols=49 Identities=29% Similarity=0.575 Sum_probs=29.7
Q ss_pred ceEEEeE-eeecCCCCCCcccc--C----CCHHHHHHHHHHHHHHHHHhcCCceEEEEee
Q 008838 266 ISVRGHN-IFWDNSKQQPSWVK--K----LSPEELREAAAKRINSVTSRYAGKLIAWDVV 318 (551)
Q Consensus 266 i~vrGH~-LvW~~~~~~P~W~~--~----~~~~~~~~~~~~~i~~v~~rY~g~i~~WDVv 318 (551)
+.+||-+ |+|.. .|+.-. + .+.++-..++.+|...+..+| |.|..-+.+
T Consensus 216 vqiRGSVPl~W~Q---~~~~~~~p~i~i~~~~~~~~~af~kHf~~L~~~Y-~~i~~VNLl 271 (319)
T PF02383_consen 216 VQIRGSVPLFWSQ---PPNLKYKPPIKISRSSEENQPAFKKHFDELLKRY-GPIIIVNLL 271 (319)
T ss_dssp EEEEE---SBS--------SSS----------HHHHHHHHHHHHHHHHHH-SEEEEEEE-
T ss_pred eEecCCCCceeEc---CCCCCCCCCeEEEeccchhHHHHHHHHHHHHHhc-CceEEEEcc
Confidence 4578875 66864 232211 1 145677899999999999999 788888888
No 114
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.47 E-value=3.9e+02 Score=25.87 Aligned_cols=102 Identities=6% Similarity=-0.087 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecc--cCCCCCCCHHHHH
Q 008838 333 ENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQG--HFSSDQPDIAYMR 410 (551)
Q Consensus 333 ~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~--H~~~~~p~~~~i~ 410 (551)
++++...++.+|+..=.+.|--|.|... ..+.+++ .+.+ ...+|--++-. |-...--+...+.
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~----------~~~~~l~-~~~D----~~l~DiK~~d~~~~~~~tG~~~~~il 117 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPA----------SKLLPLA-KLCD----EVLFDLKIMDATQARDVVKMNLPRVL 117 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCH----------HHHHHHH-HhcC----EEEEeeccCCHHHHHHHHCCCHHHHH
Confidence 4889999999999877777777887531 2222222 2222 44556665532 2211113456788
Q ss_pred HHHHHHhhCCCCEEEeeecCCCCcchHHHHHHHHHHHHc
Q 008838 411 SVLDILGSTGLPIWLTEVDVDIGPNQSQYLEEILREAYA 449 (551)
Q Consensus 411 ~~L~~~a~~glpI~iTEldv~~~~~QA~~~~~~~~~~~s 449 (551)
++|+.+++.|.+++|+=.=|+.-....+.++.+.+.+.+
T Consensus 118 ~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 118 ENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred HHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999998876666532233444444444433
No 115
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=29.15 E-value=3.2e+02 Score=22.34 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=41.2
Q ss_pred eccCCCEEEEEEEEEEcCC------CceEEEEEEeCCCeeEEceeEEEeCCCeEEEEeEEEeCCC---CcEEEEEEe
Q 008838 73 QLEKGKLYSFSAWIQVSRG------SDTVAAVFKTSDGKLIDAGKVLAKHGCWSLLKGGLAANFT---SLVEILFES 140 (551)
Q Consensus 73 ~l~~G~~Y~~SawVk~~~g------s~~~~~~l~~~~g~~~~~~~~~~~~~~Wt~l~g~~t~~~~---~~~~iy~e~ 140 (551)
.-+||.+-.|.+.++..++ ...+.+.+.+.+|.-+..... ......-.++++|.+|.. +.-.|-++.
T Consensus 10 iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~-~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSV-NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEE-EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEe-eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4589999999999998873 124788888888864322222 133444467888999886 444444443
No 116
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.02 E-value=67 Score=31.58 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred ceEEEEecCCCcccCCCeEEEEEe
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQI 200 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~ 200 (551)
-++.+|.|.+|+||++|.|.|=|.
T Consensus 74 ~l~G~VlD~~G~Pv~~A~VEiWQA 97 (226)
T COG3485 74 LLEGRVLDGNGRPVPDALVEIWQA 97 (226)
T ss_pred EEEEEEECCCCCCCCCCEEEEEEc
Confidence 577889999999999999999664
No 117
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=28.45 E-value=70 Score=29.00 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=22.2
Q ss_pred ceEEEEecCCCcccCCCeEEEEEecC
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIKS 202 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~~ 202 (551)
.++.+|+|.+|.|+++|.|.|-|...
T Consensus 13 ~l~G~V~D~~g~pv~~A~VeiW~~d~ 38 (146)
T cd00421 13 TLTGTVLDGDGCPVPDALVEIWQADA 38 (146)
T ss_pred EEEEEEECCCCCCCCCcEEEEEecCC
Confidence 57788999999999999999977543
No 118
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=28.40 E-value=72 Score=33.42 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHCCceEEEeEeeecCCCCCCccccCCCHHHHHHHHHHHHHHHHHhcCCceEEEEeecc
Q 008838 251 YTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREAAAKRINSVTSRYAGKLIAWDVVNE 320 (551)
Q Consensus 251 ~~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~rY~g~i~~WDVvNE 320 (551)
+.-.+++++.|+++||++ .|+|..- .|+.........+.+.|...++.+..++ .+..||. ||
T Consensus 251 ~~F~e~~L~~ake~~I~~---vl~~P~V--~~~~~~~~~~~~~~~~w~~~i~~l~~~~--~~~~~dm-n~ 312 (345)
T PF07611_consen 251 FFFLEKFLKLAKENGIPV---VLWWPKV--SPPYEKLYKELKVYESWWPIIKKLAKEY--GIPFLDM-NE 312 (345)
T ss_pred HHHHHHHHHHHHHcCCcE---EEEEecc--CHHHHHHHHhhchhhHHHHHHHHHHhcC--CceEecc-cC
Confidence 444689999999999999 4667542 3343333344457788999999999888 5778886 66
No 119
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=28.11 E-value=68 Score=30.72 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=21.1
Q ss_pred ceEEEEecCCCcccCCCeEEEEEec
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIK 201 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~ 201 (551)
-++.+|.|.+|+||+||.|.|=|..
T Consensus 41 ~l~G~V~D~~g~Pv~~A~VeiWqad 65 (193)
T TIGR02423 41 RLEGRVLDGDGHPVPDALIEIWQAD 65 (193)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccC
Confidence 4667789999999999999997753
No 120
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=27.68 E-value=1.7e+02 Score=30.88 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=30.3
Q ss_pred eeeeCCCceEEEeeeeeeEEEEEEeccceeEEEEEEEecC
Q 008838 499 EATTDMKGFFEFSLFHGEYNLTVKHSVTHALTSISFKVTK 538 (551)
Q Consensus 499 ~~~td~~G~~~~~~f~G~y~v~v~~~~~~~~~~~~~~~~~ 538 (551)
...||.+|.|.+..-.|.|.|+++..+- .++++++.+..
T Consensus 325 ~~~Td~~G~f~~~l~~G~y~l~vs~~Gy-~~~~~~v~v~~ 363 (374)
T cd03858 325 DVTTAEDGDYWRLLLPGTYNVTASAPGY-EPQTKSVVVPN 363 (374)
T ss_pred eeEECCCceEEEecCCEeEEEEEEEcCc-ceEEEEEEEec
Confidence 4689999999999889999999998742 34555665554
No 121
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=25.74 E-value=63 Score=25.16 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=33.0
Q ss_pred EeccccccccccccccccchhhhhhhccceEEEEecCCCcccCC
Q 008838 149 ADSVSLQPFTKEQWRSHQDKSINKERKRKVRFQLTSANKTALEG 192 (551)
Q Consensus 149 vDdvsl~~~~~~~w~~~a~~~ie~~Rk~~~~i~v~d~~g~p~~g 192 (551)
+|.+.|.-- ...||.-...++....+|+=+|.|+|.+|+.|.-
T Consensus 18 ~~~i~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~ 60 (66)
T PF11141_consen 18 VARIPLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGS 60 (66)
T ss_pred EEEEEEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEE
Confidence 555555333 3449998888888889999999999999987753
No 122
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=25.66 E-value=6.8e+02 Score=26.23 Aligned_cols=106 Identities=16% Similarity=0.227 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHHHHHHHHHHhcCCCCCCcccEEEecccCCCC----CC---
Q 008838 332 GENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQGHFSSD----QP--- 404 (551)
Q Consensus 332 g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~----~p--- 404 (551)
.++ ++..|+.+|+..|+..++.|=+.....+. .+..+.+.++.+.+ |++-+ |+... .|
T Consensus 104 ~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~----~~~~~~~~~~~~~a--------dal~l--~l~~~qe~~~p~g~ 168 (352)
T PRK05437 104 DPE-LADSFSVVRKVAPDGLLFANLGAVQLYGY----GVEEAQRAVEMIEA--------DALQI--HLNPLQELVQPEGD 168 (352)
T ss_pred Chh-hHHHHHHHHHHCCCceEEeecCccccCCC----CHHHHHHHHHhcCC--------CcEEE--eCccchhhcCCCCc
Confidence 456 78999999999999999998654211111 13445555554422 34333 44321 11
Q ss_pred -CHHHHHHHHHHHhh-CCCCEEEeeecCCCCcchHHHHHHHHHHHHcCCCeeEEEEEe
Q 008838 405 -DIAYMRSVLDILGS-TGLPIWLTEVDVDIGPNQSQYLEEILREAYAHPAVKGIISFS 460 (551)
Q Consensus 405 -~~~~i~~~L~~~a~-~glpI~iTEldv~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg 460 (551)
+...+.+.|+.+.+ .++||.+-|.+.... .+..+.+ .+ .+|++|.+=|
T Consensus 169 ~~f~~~le~i~~i~~~~~vPVivK~~g~g~s---~~~a~~l----~~-~Gvd~I~Vsg 218 (352)
T PRK05437 169 RDFRGWLDNIAEIVSALPVPVIVKEVGFGIS---KETAKRL----AD-AGVKAIDVAG 218 (352)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEeCCCCCc---HHHHHHH----HH-cCCCEEEECC
Confidence 23334466666654 489999998763221 1222222 22 3789988755
No 123
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=25.39 E-value=2e+02 Score=30.46 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.2
Q ss_pred eeeeCCCceEEEeeeeeeEEEEEEeccceeEEEEEEEecCCC
Q 008838 499 EATTDMKGFFEFSLFHGEYNLTVKHSVTHALTSISFKVTKHL 540 (551)
Q Consensus 499 ~~~td~~G~~~~~~f~G~y~v~v~~~~~~~~~~~~~~~~~~~ 540 (551)
...||.+|.|.+..-.|.|.|+++..+- .+++.++.+.++.
T Consensus 313 ~~~T~~~G~y~~~L~pG~y~v~vs~~Gy-~~~~~~V~v~~~~ 353 (363)
T cd06245 313 RVYTKEGGYFHVLLAPGQHNINVIAEGY-QQEHLPVVVSHDE 353 (363)
T ss_pred ceEeCCCcEEEEecCCceEEEEEEEeCc-eeEEEEEEEcCCC
Confidence 3578999999999889999999998742 3456666666543
No 124
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=24.87 E-value=3.4e+02 Score=25.95 Aligned_cols=16 Identities=6% Similarity=0.254 Sum_probs=13.0
Q ss_pred CCCEEEEEEEEEEcCC
Q 008838 76 KGKLYSFSAWIQVSRG 91 (551)
Q Consensus 76 ~G~~Y~~SawVk~~~g 91 (551)
+=..+++++|+|....
T Consensus 29 ~l~~fTvc~W~k~~~~ 44 (206)
T smart00159 29 PLQAFTVCLWFYSDLS 44 (206)
T ss_pred ChhHEEEEEEEEecCC
Confidence 5668999999999764
No 125
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=24.85 E-value=5.7e+02 Score=24.70 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcC-CceEEEEeeccccccCccccccchHHHHHHHHHHhccCCCceEEEecCCccccchhhhhhHHH
Q 008838 294 REAAAKRINSVTSRYA-GKLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVN 372 (551)
Q Consensus 294 ~~~~~~~i~~v~~rY~-g~i~~WDVvNE~~~~~~~~~~~g~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 372 (551)
+...+.||++.-.... +.|..||+.+|++- .+..+.+..+|+... +.. .. + .+ .....
T Consensus 19 ~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP------~ld~~~~~a~~~~~~---~~~-------t~-~---~~-~~~~~ 77 (202)
T COG1182 19 RKLADEFIETYKEKHPNDEVIERDLAAEPIP------HLDEELLAAWFKPQA---GEG-------TA-E---EK-EALAR 77 (202)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeecccCCCc------ccCHHHHhcccCCcc---CCC-------CH-H---HH-HHHHH
Confidence 4555666766665554 48999999999973 122233332222211 110 00 0 00 01122
Q ss_pred HHHHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHHHhhCCCCEEEeeecCC
Q 008838 373 YKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVD 431 (551)
Q Consensus 373 ~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~~a~~glpI~iTEldv~ 431 (551)
.-+++++|++ +. .=.|+.-+. +. .-++.++.-||.++..|+-...||-+-.
T Consensus 78 sd~l~~ef~a---AD--~vVi~~PM~-Nf--~iPa~LK~yiD~i~~aGkTFkYte~Gp~ 128 (202)
T COG1182 78 SDKLLEEFLA---AD--KVVIAAPMY-NF--NIPAQLKAYIDHIAVAGKTFKYTENGPV 128 (202)
T ss_pred HHHHHHHHHh---cC--eEEEEeccc-cc--CCCHHHHHHHHHHhcCCceEEeccCCcc
Confidence 2344666665 22 224444332 22 2347899999999999999999996644
No 126
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=24.35 E-value=1.9e+02 Score=30.71 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=31.8
Q ss_pred eeeeeCCCceEEEeeeeeeEEEEEEeccceeEEEEEEEecCCC
Q 008838 498 LEATTDMKGFFEFSLFHGEYNLTVKHSVTHALTSISFKVTKHL 540 (551)
Q Consensus 498 ~~~~td~~G~~~~~~f~G~y~v~v~~~~~~~~~~~~~~~~~~~ 540 (551)
....||.+|.|....--|+|.|+|+..+= .++++++.|.++.
T Consensus 324 ~~~~Td~~G~f~~~l~pG~ytl~vs~~GY-~~~~~~v~V~~~~ 365 (375)
T cd03863 324 HPVTTYKDGDYWRLLVPGTYKVTASARGY-DPVTKTVEVDSKG 365 (375)
T ss_pred CceEECCCccEEEccCCeeEEEEEEEcCc-ccEEEEEEEcCCC
Confidence 34678999999998889999999998742 2345567776543
No 127
>PF04300 FBA: F-box associated region; InterPro: IPR007397 Proteins containing this domain are associated with F-box domains (IPR001810 from INTERPRO), hence the name FBA. This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Q9UK22 from SWISSPROT is involved in binding to N-glycosylated proteins.; GO: 0030163 protein catabolic process; PDB: 1UMI_A 2RJ2_A 2E33_A 1UMH_A 2E32_A 2E31_A.
Probab=24.06 E-value=6.2e+02 Score=23.94 Aligned_cols=119 Identities=19% Similarity=0.280 Sum_probs=59.6
Q ss_pred CCceeeCCCcCCCCCCeeee-cce--eEEEee-------ccCCceeEEEeeCCCCCCcceeeeeccC-C----------C
Q 008838 20 GGGLIVNPEFNRGTEGWTAF-GQA--AIREAT-------SEEGNKYIVAHSRTNPLDSFSQKVQLEK-G----------K 78 (551)
Q Consensus 20 ~~~li~n~~FE~g~~gW~~~-g~~--~~~~~~-------~~~G~~~l~vt~Rt~~w~G~~~~v~l~~-G----------~ 78 (551)
.-|||+|+.=|.++.+|... |+. .++.-. .+.+.....|+ +-.|.--+|.|-|++ | -
T Consensus 11 ~RNLlkNp~ge~~~~~W~v~ngGd~w~vE~~p~~~~~~~p~~~v~~cFvt--Sy~wc~K~Q~IDL~~eG~~~~lLD~~qP 88 (184)
T PF04300_consen 11 GRNLLKNPSGEEGFQGWEVENGGDGWRVEEPPGDCGGPFPDPEVQKCFVT--SYRWCSKSQVIDLQAEGYWPELLDSFQP 88 (184)
T ss_dssp -S--SSSSSSTTTTTT-EEEE-TT--EEEESSBTTB---TTTT--EEEEE---SS-EEEEEEEETTTTT--HHHHHHT--
T ss_pred cCccCcCCCccccCccceecCCCCCEEEeeCCcccCCCCCCchhcccccc--ccccEEEEEEEehhhccCCHHHhcCCCC
Confidence 46999999999999999742 322 233210 12233344444 346666778774443 2 3
Q ss_pred EEEEEEEEEEcCCCc---eEEEEEEeCCCeeE---EceeEE---EeCCCeEEEEeEEEeCCCCcEEEEEEe
Q 008838 79 LYSFSAWIQVSRGSD---TVAAVFKTSDGKLI---DAGKVL---AKHGCWSLLKGGLAANFTSLVEILFES 140 (551)
Q Consensus 79 ~Y~~SawVk~~~gs~---~~~~~l~~~~g~~~---~~~~~~---~~~~~Wt~l~g~~t~~~~~~~~iy~e~ 140 (551)
.-+||-|.--..+.. .+.+.|.+++.+.+ ..+... -++..|.+++-+|+=-..+.=.|.|+-
T Consensus 89 ~I~isdWy~~r~dc~~~Y~l~V~Lld~~~~vi~~f~~~~~~~~~~~~~~W~qvsh~F~~Yg~GVR~I~f~h 159 (184)
T PF04300_consen 89 EITISDWYAGRFDCGCVYELHVQLLDANKNVIAEFKPGPVPIPQWTDNPWKQVSHTFSNYGPGVRFIRFEH 159 (184)
T ss_dssp EEEEEEEEE--SSS-EEEEEEEEEEETTTEEEEEEEEESEEE-T--T--EEEEEEEE-S--TTEEEEEEEE
T ss_pred CEEEEEEEeccCCcCcEEEEEEEECcCCCcEEEEEecccccccccCCCCcEEEEEEEeCCCCCCEEEEEEE
Confidence 678898876544322 36777777764422 122222 247889999999976655644566653
No 128
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=23.76 E-value=2.2e+02 Score=24.92 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=32.7
Q ss_pred eeeeCCCceEEEe-eeeeeEEEEEEeccceeEEEEEEEecCCCCCceeEEEe
Q 008838 499 EATTDMKGFFEFS-LFHGEYNLTVKHSVTHALTSISFKVTKHLPQRTTNVQI 549 (551)
Q Consensus 499 ~~~td~~G~~~~~-~f~G~y~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (551)
.+-+..||.|.|. .=-|.|.|.|....-. =..+.++|++........+.+
T Consensus 23 ~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~-F~~~RVdV~~~~~~~~~~~~~ 73 (123)
T PF09430_consen 23 SAFVRSDGSFVFHNVPPGSYLLEVHSPDYV-FPPYRVDVSSSGKIRARKVNY 73 (123)
T ss_pred EEEecCCCEEEeCCCCCceEEEEEECCCcc-ccCEEEEEecCCCCCceEEEe
Confidence 5778889999998 6789999999877311 222566666443334434443
No 129
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=23.45 E-value=1.9e+02 Score=31.27 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=52.9
Q ss_pred hHHHHHHHHHC-CceEEEeEeeecCCCCCCccc-c-CCCHHHHHHHHHHHHHHHHHhcCC-ceEEEEeeccccccCcccc
Q 008838 254 ADAMLQFCEKN-GISVRGHNIFWDNSKQQPSWV-K-KLSPEELREAAAKRINSVTSRYAG-KLIAWDVVNENLHFRFFED 329 (551)
Q Consensus 254 ~D~~v~~a~~~-gi~vrGH~LvW~~~~~~P~W~-~-~~~~~~~~~~~~~~i~~v~~rY~g-~i~~WDVvNE~~~~~~~~~ 329 (551)
+|.+.+||... ..-+|=.+++|+.- +-=-. . +.+.+.|.+.|.+|++.+++-|.| ||+ |- |..+
T Consensus 338 ~dpl~dFA~~~S~~YLRREvIvWGDc--VKLRYG~~peDsP~LW~~M~~Yt~~~A~iF~G~RiD-----NC--HSTP--- 405 (423)
T PF14701_consen 338 ADPLVDFASPDSRAYLRREVIVWGDC--VKLRYGSKPEDSPFLWKHMKEYTELMAKIFHGFRID-----NC--HSTP--- 405 (423)
T ss_pred CchhhhhcCCcccceEEEEEEecCce--eeecCCCCCCCCHHHHHHHHHHHHHHHHhcCeeeee-----cC--CCCc---
Confidence 57888888643 44567778889852 11000 0 113456999999999999999998 675 43 2211
Q ss_pred ccchHHHHHHHHHHhccCCC
Q 008838 330 NLGENASAEFYRIAHQLDPN 349 (551)
Q Consensus 330 ~~g~d~~~~af~~Ar~~dP~ 349 (551)
-...+.....||++.|+
T Consensus 406 ---lhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 406 ---LHVAEYLLDAARKVNPN 422 (423)
T ss_pred ---HHHHHHHHHHHHhhCCC
Confidence 12345567788998887
No 130
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=23.43 E-value=1.4e+02 Score=32.66 Aligned_cols=61 Identities=16% Similarity=0.349 Sum_probs=41.4
Q ss_pred cchhhhHHHHHHHHHCCceE------EEeEeeecCCC---CCCccccC--------C--CHHHHHHHHHHHHHHHHHhcC
Q 008838 249 ENYTIADAMLQFCEKNGISV------RGHNIFWDNSK---QQPSWVKK--------L--SPEELREAAAKRINSVTSRYA 309 (551)
Q Consensus 249 ~~~~~~D~~v~~a~~~gi~v------rGH~LvW~~~~---~~P~W~~~--------~--~~~~~~~~~~~~i~~v~~rY~ 309 (551)
|.-+.+-.+|++|+-+||+| -||+.-|+.-. .+|.|-.. + ..+...+.+.+++++|.+-|.
T Consensus 247 YT~eDv~evV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp 326 (542)
T KOG2499|consen 247 YTREDVSEVVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFP 326 (542)
T ss_pred ecHHHHHHHHHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCc
Confidence 33344568999999999998 59999996431 13444321 1 124577888888888888664
No 131
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=23.40 E-value=3.6e+02 Score=28.06 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHH
Q 008838 371 VNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLD 414 (551)
Q Consensus 371 ~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~ 414 (551)
.+..+.++.+++ .+ +.-+|++.|++....+...+.+.++
T Consensus 148 ~e~~~~~~~~~~---~~--l~l~Gl~~H~gs~~~d~~~~~~~~~ 186 (368)
T cd06810 148 SEARAALERAKE---LD--LRLVGLHFHVGSQILDLETIVQALS 186 (368)
T ss_pred HHHHHHHHHHHh---CC--CcEEEEEEcCCcCCCCHHHHHHHHH
Confidence 445555555544 23 8889999999876555554444433
No 132
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=21.72 E-value=1.9e+02 Score=30.45 Aligned_cols=56 Identities=13% Similarity=0.298 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCceEEEeEeeecCCCCCCccccCC-----CHHHHHHHHHHHHHHHHHhcCCceEEEEe
Q 008838 255 DAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKL-----SPEELREAAAKRINSVTSRYAGKLIAWDV 317 (551)
Q Consensus 255 D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~~~~-----~~~~~~~~~~~~i~~v~~rY~g~i~~WDV 317 (551)
-.+|.+.++||+.+....+ +.-|+|.... +|++..+.|.+|...+-. .-||..||=
T Consensus 156 ~~fv~~m~~nGvnlyalSV-----QNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~--~~rV~~pes 216 (433)
T COG5520 156 NDFVLEMKNNGVNLYALSV-----QNEPDYAPTYDWCWWTPQEELRFMRQYLASINA--EMRVIIPES 216 (433)
T ss_pred HHHHHHHHhCCCceeEEee-----ccCCcccCCCCcccccHHHHHHHHHHhhhhhcc--ccEEecchh
Confidence 3567788999999976543 2468887542 788888888888777765 346777663
No 133
>PF13501 SoxY: Sulfur oxidation protein SoxY; PDB: 2OXG_B 2OX5_B 2OXH_F 2NNF_A 2NNC_B.
Probab=21.67 E-value=4.5e+02 Score=22.69 Aligned_cols=42 Identities=33% Similarity=0.384 Sum_probs=28.2
Q ss_pred eccC-CCEEEEEEEEEEcCCCceEEEEEEeCCCeeE-EceeEEEe
Q 008838 73 QLEK-GKLYSFSAWIQVSRGSDTVAAVFKTSDGKLI-DAGKVLAK 115 (551)
Q Consensus 73 ~l~~-G~~Y~~SawVk~~~gs~~~~~~l~~~~g~~~-~~~~~~~~ 115 (551)
.|.| +..=.||..+|+.. ++++++..+.+||++. ....+.++
T Consensus 64 ~~~p~~~~~~~stRir~~~-~s~V~ava~t~dG~~~~a~~~Vkvt 107 (111)
T PF13501_consen 64 ELTPAGGEPYVSTRIRMAQ-TSPVRAVAETSDGKLYMASKEVKVT 107 (111)
T ss_dssp EE-TTCCEEEEEEEEE-SS-SEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred EEcCCCCCceeEEEEEecC-cccEEEEEEecCCeEEEeeEEEEee
Confidence 5634 77788999999986 4668898898888853 33334444
No 134
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=21.65 E-value=83 Score=32.06 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.4
Q ss_pred ceEEEEecCCCcccCCCeEEEEEecC
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIKS 202 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~~ 202 (551)
-++.+|.|.+|+||+||.|.|=|...
T Consensus 130 ~v~G~V~D~~G~PI~gA~VeIWqad~ 155 (285)
T TIGR02439 130 FLHGQVTDADGKPIAGAKVELWHANT 155 (285)
T ss_pred EEEEEEECCCCCCcCCcEEEEEccCC
Confidence 46677999999999999999976543
No 135
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.17 E-value=86 Score=31.91 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=20.9
Q ss_pred ceEEEEecCCCcccCCCeEEEEEec
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIK 201 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~ 201 (551)
-++.+|.|.+|+||+||.|.|=|..
T Consensus 126 ~l~G~V~D~~G~PI~~A~VeiWqad 150 (282)
T cd03460 126 VMHGTVTDTDGKPVPGAKVEVWHAN 150 (282)
T ss_pred EEEEEEECCCCCCcCCcEEEEECCC
Confidence 3667789999999999999997653
No 136
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.13 E-value=1.1e+02 Score=29.86 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=20.7
Q ss_pred eEEEEecCCCcccCCCeEEEEEecC
Q 008838 178 VRFQLTSANKTALEGAVVSVTQIKS 202 (551)
Q Consensus 178 ~~i~v~d~~g~p~~ga~v~v~~~~~ 202 (551)
++-+|.|.+|+||+||.|.|=|...
T Consensus 68 l~G~V~D~~G~PV~~A~VEIWQad~ 92 (220)
T cd03464 68 VHGRVLDEDGRPVPNTLVEIWQANA 92 (220)
T ss_pred EEEEEECCCCCCCCCCEEEEEecCC
Confidence 4556899999999999999977543
No 137
>PRK12569 hypothetical protein; Provisional
Probab=20.63 E-value=5.9e+02 Score=25.36 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHCCceEEEeEeeecCCCCCCccc------cCCCHHHHHHHHHHHHH---HHHHhcCCceEEEEeecccc
Q 008838 252 TIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWV------KKLSPEELREAAAKRIN---SVTSRYAGKLIAWDVVNENL 322 (551)
Q Consensus 252 ~~~D~~v~~a~~~gi~vrGH~LvW~~~~~~P~W~------~~~~~~~~~~~~~~~i~---~v~~rY~g~i~~WDVvNE~~ 322 (551)
..-++.++.|+++|+.+=.|+- .|+-. -.++++++++.+..-|. .++...+.++.+-- |
T Consensus 47 ~~M~~tv~lA~~~~V~IGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~~~~~g~~l~hVK----P- 114 (245)
T PRK12569 47 NIMRRTVELAKAHGVGIGAHPG-------FRDLVGFGRRHINASPQELVNDVLYQLGALREFARAHGVRLQHVK----P- 114 (245)
T ss_pred HHHHHHHHHHHHcCCEeccCCC-------CCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----C-
Confidence 4567899999999999999973 34422 13488888887776664 45666666766432 1
Q ss_pred ccCcccccc-chHHHHHHHHHHhccCCCceEEEe
Q 008838 323 HFRFFEDNL-GENASAEFYRIAHQLDPNTIMFLN 355 (551)
Q Consensus 323 ~~~~~~~~~-g~d~~~~af~~Ar~~dP~a~L~~N 355 (551)
|+..+-... .++......+.+++.+|+..|+.-
T Consensus 115 HGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~ 148 (245)
T PRK12569 115 HGALYMHAARDEALARLLVEALARLDPLLILYCM 148 (245)
T ss_pred CHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEec
Confidence 322221111 235566677888999999888763
No 138
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=20.51 E-value=1.1e+02 Score=30.74 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=20.9
Q ss_pred ceEEEEecCCCcccCCCeEEEEEec
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIK 201 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~ 201 (551)
-++.+|.|.+|+||+||.|.|=|..
T Consensus 106 ~l~G~V~D~~G~Pv~~A~VeiWqad 130 (256)
T cd03458 106 FVHGTVTDTDGKPLAGATVDVWHAD 130 (256)
T ss_pred EEEEEEEcCCCCCCCCcEEEEEccC
Confidence 4667799999999999999996643
No 139
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=20.42 E-value=1.2e+02 Score=29.65 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.3
Q ss_pred eEEEEecCCCcccCCCeEEEEEec
Q 008838 178 VRFQLTSANKTALEGAVVSVTQIK 201 (551)
Q Consensus 178 ~~i~v~d~~g~p~~ga~v~v~~~~ 201 (551)
++-+|+|.+|+||+||.|.|=|..
T Consensus 63 l~G~V~D~~g~PV~~A~VEIWQad 86 (220)
T TIGR02422 63 VHGRVLDEDGRPVPNTLVEVWQAN 86 (220)
T ss_pred EEEEEECCCCCCCCCCEEEEEecC
Confidence 455689999999999999997753
No 140
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=20.42 E-value=4.7e+02 Score=27.21 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCCCCCcccEEEecccCCCCCCCHHHHHHHHHH
Q 008838 371 VNYKKKIDEILSYPGNAGMSLGIGLQGHFSSDQPDIAYMRSVLDI 415 (551)
Q Consensus 371 ~~~~~~l~~l~~~~~~g~~iDgIG~Q~H~~~~~p~~~~i~~~L~~ 415 (551)
.+..+.++.+++ -..++-+|++.|++....+...+.+.+++
T Consensus 152 ~e~~~~~~~~~~----~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~ 192 (373)
T cd06828 152 EQALEAYRRAKE----LPGLKLVGLHCHIGSQILDLEPFVEAAEK 192 (373)
T ss_pred HHHHHHHHHHHh----CCCCcEEEEEEecCCCCCCHHHHHHHHHH
Confidence 445555555433 12467899999998654455444444444
No 141
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=20.38 E-value=92 Score=31.68 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=20.8
Q ss_pred ceEEEEecCCCcccCCCeEEEEEec
Q 008838 177 KVRFQLTSANKTALEGAVVSVTQIK 201 (551)
Q Consensus 177 ~~~i~v~d~~g~p~~ga~v~v~~~~ 201 (551)
-++.+|.|.+|+||+||.|.|=|..
T Consensus 134 ~v~G~V~D~~G~Pv~gA~VdiWqad 158 (281)
T TIGR02438 134 VFSGQVTDLDGNGLAGAKVELWHAD 158 (281)
T ss_pred EEEEEEEcCCCCCcCCCEEEEEecC
Confidence 4666799999999999999996643
Done!