Query 008839
Match_columns 551
No_of_seqs 457 out of 3469
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 17:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 5.6E-85 1.2E-89 668.7 55.2 443 70-524 2-453 (454)
2 PLN02546 glutathione reductase 100.0 1.3E-84 2.9E-89 689.6 59.3 482 70-551 77-558 (558)
3 KOG0405 Pyridine nucleotide-di 100.0 1.8E-82 4E-87 594.3 35.7 452 70-530 18-477 (478)
4 PLN02507 glutathione reductase 100.0 1.6E-77 3.5E-82 633.6 57.1 460 71-531 24-489 (499)
5 TIGR01423 trypano_reduc trypan 100.0 2.2E-77 4.7E-82 628.5 56.0 461 71-532 2-478 (486)
6 TIGR01421 gluta_reduc_1 glutat 100.0 2.8E-77 6E-82 626.4 55.6 443 72-524 2-449 (450)
7 PRK06116 glutathione reductase 100.0 7.2E-77 1.6E-81 626.1 55.4 445 69-524 1-449 (450)
8 TIGR01424 gluta_reduc_2 glutat 100.0 1.1E-76 2.5E-81 622.6 55.2 441 72-524 2-445 (446)
9 PRK06370 mercuric reductase; V 100.0 2.2E-75 4.7E-80 616.7 57.3 451 69-530 2-458 (463)
10 PTZ00058 glutathione reductase 100.0 4.3E-75 9.3E-80 616.4 53.4 441 71-525 47-557 (561)
11 KOG1335 Dihydrolipoamide dehyd 100.0 1.3E-75 2.8E-80 555.0 41.9 446 71-529 38-499 (506)
12 PRK07846 mycothione reductase; 100.0 1.7E-74 3.7E-79 604.8 53.7 438 72-524 1-445 (451)
13 TIGR01438 TGR thioredoxin and 100.0 6.4E-74 1.4E-78 604.0 54.2 455 72-529 2-472 (484)
14 PRK06467 dihydrolipoamide dehy 100.0 1.4E-73 3E-78 601.8 56.0 444 69-525 1-455 (471)
15 PTZ00153 lipoamide dehydrogena 100.0 3.7E-73 8.1E-78 608.5 58.4 453 72-533 116-658 (659)
16 TIGR03452 mycothione_red mycot 100.0 3.4E-73 7.4E-78 595.7 52.9 438 72-524 2-448 (452)
17 PRK07845 flavoprotein disulfid 100.0 5.2E-72 1.1E-76 589.5 56.2 440 73-523 2-454 (466)
18 PRK06115 dihydrolipoamide dehy 100.0 4.5E-72 9.8E-77 590.0 55.6 438 72-525 3-456 (466)
19 PRK07818 dihydrolipoamide dehy 100.0 6.7E-72 1.4E-76 590.1 56.7 440 71-525 3-456 (466)
20 PRK05249 soluble pyridine nucl 100.0 9.2E-72 2E-76 589.8 55.7 442 72-525 5-453 (461)
21 TIGR02053 MerA mercuric reduct 100.0 1.2E-71 2.6E-76 588.5 56.0 441 73-526 1-449 (463)
22 PRK14727 putative mercuric red 100.0 1.6E-71 3.4E-76 587.9 55.5 442 71-526 15-465 (479)
23 PRK14694 putative mercuric red 100.0 2.4E-71 5.2E-76 585.8 55.6 440 71-526 5-454 (468)
24 PRK06416 dihydrolipoamide dehy 100.0 3.2E-71 6.9E-76 585.5 55.9 439 71-525 3-452 (462)
25 PRK06912 acoL dihydrolipoamide 100.0 4.1E-71 9E-76 582.4 55.5 439 74-525 2-448 (458)
26 PRK05976 dihydrolipoamide dehy 100.0 9.3E-71 2E-75 582.3 57.9 445 69-525 1-462 (472)
27 PRK06292 dihydrolipoamide dehy 100.0 4.3E-71 9.3E-76 584.5 55.1 442 71-526 2-451 (460)
28 PTZ00052 thioredoxin reductase 100.0 1.9E-71 4.2E-76 587.9 51.9 460 69-534 2-487 (499)
29 PRK08010 pyridine nucleotide-d 100.0 2.4E-70 5.2E-75 575.1 55.6 426 72-525 3-437 (441)
30 PRK06327 dihydrolipoamide dehy 100.0 3.2E-70 7E-75 577.8 56.2 451 69-525 1-465 (475)
31 PRK13748 putative mercuric red 100.0 2.1E-70 4.6E-75 593.0 55.2 440 72-526 98-547 (561)
32 PRK07251 pyridine nucleotide-d 100.0 7.9E-69 1.7E-73 563.1 54.9 425 72-525 3-436 (438)
33 TIGR01350 lipoamide_DH dihydro 100.0 4.7E-68 1E-72 561.8 56.4 443 72-526 1-452 (461)
34 KOG4716 Thioredoxin reductase 100.0 8.2E-69 1.8E-73 500.4 31.8 454 70-527 17-490 (503)
35 PRK13512 coenzyme A disulfide 100.0 5.6E-56 1.2E-60 464.5 39.0 402 73-530 2-436 (438)
36 PRK09564 coenzyme A disulfide 100.0 3.4E-54 7.3E-59 454.1 40.7 406 74-530 2-442 (444)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.2E-47 2.7E-52 401.8 38.5 337 180-522 53-421 (427)
38 PRK14989 nitrite reductase sub 100.0 1.3E-44 2.8E-49 400.2 35.6 386 73-521 4-418 (847)
39 PRK04965 NADH:flavorubredoxin 100.0 3E-40 6.6E-45 340.1 34.8 349 73-489 3-367 (377)
40 PRK09754 phenylpropionate diox 100.0 4.5E-39 9.8E-44 333.2 35.8 358 72-503 3-384 (396)
41 TIGR02374 nitri_red_nirB nitri 100.0 9.9E-39 2.1E-43 354.3 32.9 365 75-508 1-386 (785)
42 PTZ00318 NADH dehydrogenase-li 100.0 5.4E-36 1.2E-40 312.3 27.1 279 72-405 10-345 (424)
43 COG1252 Ndh NADH dehydrogenase 100.0 2.3E-35 4.9E-40 295.1 27.5 277 72-404 3-328 (405)
44 TIGR01292 TRX_reduct thioredox 100.0 1.1E-34 2.4E-39 290.0 30.3 280 73-404 1-297 (300)
45 PRK10262 thioredoxin reductase 100.0 2.5E-34 5.4E-39 289.8 28.4 286 71-404 5-311 (321)
46 TIGR03143 AhpF_homolog putativ 100.0 2.1E-33 4.5E-38 301.6 31.0 284 69-404 1-305 (555)
47 TIGR01316 gltA glutamate synth 100.0 6E-34 1.3E-38 298.5 25.8 276 71-404 132-446 (449)
48 TIGR03140 AhpF alkyl hydropero 100.0 1.5E-33 3.2E-38 300.6 29.1 283 70-405 210-510 (515)
49 COG1251 NirB NAD(P)H-nitrite r 100.0 7.4E-34 1.6E-38 293.1 25.1 370 72-510 3-393 (793)
50 COG0492 TrxB Thioredoxin reduc 100.0 5.3E-33 1.1E-37 272.4 28.3 277 71-404 2-297 (305)
51 KOG1336 Monodehydroascorbate/f 100.0 2.1E-33 4.6E-38 277.7 25.0 361 73-508 75-463 (478)
52 PRK12831 putative oxidoreducta 100.0 7.5E-33 1.6E-37 290.6 27.6 276 71-404 139-457 (464)
53 TIGR03169 Nterm_to_SelD pyridi 100.0 4.8E-33 1E-37 285.7 24.6 275 74-404 1-307 (364)
54 PRK15317 alkyl hydroperoxide r 100.0 2.6E-32 5.7E-37 291.3 30.5 282 71-405 210-509 (517)
55 PRK11749 dihydropyrimidine deh 100.0 2.3E-31 5.1E-36 280.4 27.9 276 71-404 139-448 (457)
56 PRK09853 putative selenate red 100.0 3.4E-31 7.5E-36 291.0 28.8 274 71-407 538-841 (1019)
57 PRK12778 putative bifunctional 100.0 1.5E-30 3.3E-35 289.3 28.4 274 71-404 430-746 (752)
58 PRK12770 putative glutamate sy 100.0 3.5E-30 7.6E-35 262.6 27.6 278 72-405 18-347 (352)
59 TIGR03315 Se_ygfK putative sel 100.0 8E-30 1.7E-34 281.9 30.1 273 71-407 536-839 (1012)
60 PRK12810 gltD glutamate syntha 100.0 7.3E-30 1.6E-34 269.5 27.6 281 71-404 142-461 (471)
61 PRK12779 putative bifunctional 100.0 1.2E-29 2.7E-34 283.6 30.9 276 71-404 305-623 (944)
62 PRK12814 putative NADPH-depend 100.0 3.6E-29 7.8E-34 272.9 27.7 274 71-404 192-497 (652)
63 PRK12775 putative trifunctiona 100.0 1.3E-28 2.9E-33 277.8 26.9 277 71-404 429-751 (1006)
64 TIGR01318 gltD_gamma_fam gluta 100.0 4.3E-28 9.3E-33 255.1 28.8 276 71-404 140-462 (467)
65 PRK12769 putative oxidoreducta 100.0 1E-27 2.2E-32 262.7 28.9 276 71-404 326-648 (654)
66 TIGR01317 GOGAT_sm_gam glutama 100.0 1.9E-27 4E-32 251.2 27.4 279 72-404 143-475 (485)
67 KOG2495 NADH-dehydrogenase (ub 100.0 2.8E-28 6.2E-33 236.7 18.5 283 70-403 53-392 (491)
68 KOG0404 Thioredoxin reductase 100.0 1.7E-27 3.7E-32 211.4 19.6 283 72-401 8-312 (322)
69 PRK12809 putative oxidoreducta 100.0 6.2E-27 1.3E-31 255.4 26.8 277 71-405 309-632 (639)
70 PRK13984 putative oxidoreducta 100.0 5.2E-27 1.1E-31 255.7 25.4 277 71-404 282-598 (604)
71 COG0446 HcaD Uncharacterized N 99.9 1.9E-25 4.1E-30 233.6 31.1 319 183-510 65-409 (415)
72 PLN02852 ferredoxin-NADP+ redu 99.9 1.7E-25 3.7E-30 232.6 28.5 282 72-405 26-419 (491)
73 COG3634 AhpF Alkyl hydroperoxi 99.9 2.9E-26 6.3E-31 216.2 17.7 280 69-404 208-511 (520)
74 KOG1346 Programmed cell death 99.9 1.1E-25 2.3E-30 216.7 17.0 301 70-408 176-521 (659)
75 TIGR01372 soxA sarcosine oxida 99.9 1.9E-24 4.1E-29 245.9 29.0 272 71-404 162-468 (985)
76 PRK12771 putative glutamate sy 99.9 3.6E-24 7.8E-29 231.3 27.1 274 71-404 136-440 (564)
77 PLN02172 flavin-containing mon 99.9 2.1E-23 4.5E-28 218.0 27.0 300 71-407 9-352 (461)
78 PF02852 Pyr_redox_dim: Pyridi 99.9 2.3E-23 5.1E-28 174.7 13.8 109 416-524 1-109 (110)
79 PF00743 FMO-like: Flavin-bind 99.9 1.1E-20 2.3E-25 200.0 21.1 306 73-407 2-396 (531)
80 COG0493 GltD NADPH-dependent g 99.8 2.4E-20 5.2E-25 192.2 15.2 280 73-404 124-447 (457)
81 PF07992 Pyr_redox_2: Pyridine 99.8 3.7E-20 8E-25 173.7 8.8 179 74-385 1-199 (201)
82 PRK05329 anaerobic glycerol-3- 99.8 2.6E-17 5.7E-22 169.0 23.9 155 248-405 218-418 (422)
83 PRK06567 putative bifunctional 99.8 2.3E-17 5E-22 179.9 22.6 280 71-403 382-765 (1028)
84 KOG3851 Sulfide:quinone oxidor 99.7 9.2E-18 2E-22 157.4 11.8 201 198-404 121-357 (446)
85 KOG2755 Oxidoreductase [Genera 99.7 1.1E-16 2.4E-21 146.3 15.7 180 198-384 80-321 (334)
86 COG2072 TrkA Predicted flavopr 99.7 5.6E-17 1.2E-21 169.0 14.3 186 70-281 6-211 (443)
87 PF13738 Pyr_redox_3: Pyridine 99.7 4.3E-17 9.3E-22 153.1 12.1 185 76-279 1-201 (203)
88 KOG0399 Glutamate synthase [Am 99.7 1.5E-16 3.3E-21 169.1 16.8 276 72-403 1785-2115(2142)
89 PF13434 K_oxygenase: L-lysine 99.7 1.9E-17 4E-22 166.5 9.5 251 72-342 2-340 (341)
90 COG3486 IucD Lysine/ornithine 99.7 2E-15 4.3E-20 147.5 21.2 325 69-407 2-414 (436)
91 KOG1399 Flavin-containing mono 99.7 2.4E-15 5.3E-20 154.5 22.8 295 71-407 5-333 (448)
92 PTZ00188 adrenodoxin reductase 99.6 1.1E-13 2.3E-18 142.2 20.6 254 73-386 40-417 (506)
93 COG1148 HdrA Heterodisulfide r 99.6 8.6E-14 1.9E-18 138.0 17.1 192 207-403 298-540 (622)
94 KOG1800 Ferredoxin/adrenodoxin 99.5 1.1E-12 2.5E-17 126.5 17.6 277 73-405 21-404 (468)
95 PF00070 Pyr_redox: Pyridine n 99.5 5E-13 1.1E-17 105.0 11.5 80 247-327 1-80 (80)
96 COG2081 Predicted flavoprotein 99.4 4.3E-12 9.2E-17 124.8 16.7 58 285-343 110-167 (408)
97 TIGR03378 glycerol3P_GlpB glyc 99.4 2.2E-10 4.8E-15 116.6 24.3 136 266-404 245-419 (419)
98 PRK07843 3-ketosteroid-delta-1 99.3 5.8E-12 1.3E-16 135.8 12.0 107 241-347 156-274 (557)
99 PRK12842 putative succinate de 99.3 1.5E-11 3.2E-16 133.4 14.0 111 235-345 147-277 (574)
100 COG4529 Uncharacterized protei 99.3 5.7E-10 1.2E-14 112.8 23.3 197 72-278 1-231 (474)
101 PRK06134 putative FAD-binding 99.3 2.8E-11 6.2E-16 131.2 15.0 247 70-345 10-280 (581)
102 PRK08401 L-aspartate oxidase; 99.2 4.5E-11 9.8E-16 126.4 11.9 149 72-222 1-176 (466)
103 PF03486 HI0933_like: HI0933-l 99.2 1.6E-10 3.5E-15 118.7 15.1 60 286-345 109-168 (409)
104 COG0029 NadB Aspartate oxidase 99.2 4.2E-10 9.1E-15 113.5 13.8 314 74-407 9-397 (518)
105 TIGR00551 nadB L-aspartate oxi 99.1 7E-10 1.5E-14 118.1 14.5 47 359-405 332-387 (488)
106 PRK13800 putative oxidoreducta 99.1 7.7E-10 1.7E-14 125.8 15.5 46 360-405 361-407 (897)
107 PRK04176 ribulose-1,5-biphosph 99.1 4.5E-09 9.6E-14 101.8 17.5 117 287-405 105-252 (257)
108 TIGR00292 thiazole biosynthesi 99.1 3.1E-09 6.8E-14 102.5 14.9 118 287-405 101-251 (254)
109 PRK08275 putative oxidoreducta 99.1 2.5E-09 5.3E-14 115.6 15.4 44 361-404 357-401 (554)
110 COG3075 GlpB Anaerobic glycero 99.1 4E-09 8.6E-14 100.5 14.7 119 287-405 259-415 (421)
111 PRK07804 L-aspartate oxidase; 99.0 2.1E-08 4.6E-13 108.0 20.8 33 71-103 15-47 (541)
112 PRK06854 adenylylsulfate reduc 99.0 4.9E-09 1.1E-13 114.1 15.6 43 362-404 371-428 (608)
113 PRK06263 sdhA succinate dehydr 99.0 4.8E-09 1E-13 113.2 15.1 47 359-405 347-401 (543)
114 PRK09077 L-aspartate oxidase; 99.0 3.8E-09 8.3E-14 113.6 14.1 46 360-405 353-407 (536)
115 PRK09231 fumarate reductase fl 99.0 9.7E-09 2.1E-13 111.4 16.7 47 359-405 357-412 (582)
116 PF01266 DAO: FAD dependent ox 99.0 4E-08 8.8E-13 100.3 19.8 60 285-345 146-205 (358)
117 PRK07395 L-aspartate oxidase; 99.0 3.8E-09 8.2E-14 113.6 12.5 32 71-103 8-39 (553)
118 COG0579 Predicted dehydrogenas 99.0 2.9E-08 6.2E-13 101.3 17.4 60 286-345 153-213 (429)
119 PRK08071 L-aspartate oxidase; 99.0 1.1E-08 2.3E-13 109.5 14.9 46 360-405 332-386 (510)
120 TIGR00136 gidA glucose-inhibit 98.9 6.7E-08 1.4E-12 102.6 19.7 30 73-102 1-30 (617)
121 PRK08641 sdhA succinate dehydr 98.9 2.1E-08 4.6E-13 108.9 16.4 32 72-103 3-34 (589)
122 TIGR01176 fum_red_Fp fumarate 98.9 9.6E-09 2.1E-13 111.2 13.5 47 359-405 356-411 (580)
123 PRK11728 hydroxyglutarate oxid 98.9 7.9E-08 1.7E-12 99.8 19.4 58 285-344 148-205 (393)
124 PRK06452 sdhA succinate dehydr 98.9 1.3E-07 2.8E-12 102.4 21.6 34 71-104 4-37 (566)
125 TIGR01377 soxA_mon sarcosine o 98.9 9.9E-08 2.1E-12 98.7 20.0 57 285-343 144-200 (380)
126 PRK06069 sdhA succinate dehydr 98.9 1.8E-07 4E-12 101.7 22.9 33 71-103 4-39 (577)
127 COG1635 THI4 Ribulose 1,5-bisp 98.9 2.2E-08 4.9E-13 90.4 12.9 32 72-103 30-61 (262)
128 PRK09897 hypothetical protein; 98.9 1E-07 2.2E-12 101.2 20.2 181 73-267 2-213 (534)
129 TIGR01812 sdhA_frdA_Gneg succi 98.9 1.1E-07 2.3E-12 103.5 20.9 30 74-103 1-30 (566)
130 PLN02815 L-aspartate oxidase 98.9 1.7E-08 3.8E-13 109.0 14.6 32 71-103 28-59 (594)
131 PRK12845 3-ketosteroid-delta-1 98.9 6.2E-08 1.4E-12 104.4 18.3 61 71-141 15-78 (564)
132 PRK12409 D-amino acid dehydrog 98.9 5.9E-08 1.3E-12 101.5 17.5 57 286-343 197-258 (410)
133 TIGR03329 Phn_aa_oxid putative 98.9 1.3E-07 2.8E-12 100.3 20.0 57 285-344 182-238 (460)
134 PRK11259 solA N-methyltryptoph 98.9 8.3E-08 1.8E-12 99.1 18.2 57 286-344 149-205 (376)
135 PRK05192 tRNA uridine 5-carbox 98.9 1.3E-08 2.9E-13 108.0 11.2 32 71-102 3-34 (618)
136 TIGR02061 aprA adenosine phosp 98.8 3.3E-08 7.2E-13 106.9 14.3 38 367-404 400-439 (614)
137 PRK06847 hypothetical protein; 98.8 5.6E-08 1.2E-12 100.3 15.5 59 286-345 107-165 (375)
138 PRK07512 L-aspartate oxidase; 98.8 3.7E-08 8.1E-13 105.3 14.0 46 360-405 341-395 (513)
139 PRK08626 fumarate reductase fl 98.8 2E-08 4.4E-13 110.1 11.8 32 72-103 5-36 (657)
140 PRK08773 2-octaprenyl-3-methyl 98.8 8.1E-08 1.8E-12 99.7 14.9 58 287-345 114-171 (392)
141 TIGR01811 sdhA_Bsu succinate d 98.8 3.3E-08 7.1E-13 107.6 11.9 46 360-405 370-423 (603)
142 PRK10157 putative oxidoreducta 98.8 1.5E-07 3.3E-12 98.5 16.5 55 288-343 110-164 (428)
143 PRK00711 D-amino acid dehydrog 98.8 1.9E-07 4.2E-12 97.8 17.3 57 286-343 201-257 (416)
144 TIGR01292 TRX_reduct thioredox 98.8 8E-08 1.7E-12 95.8 13.5 99 247-347 2-116 (300)
145 TIGR00275 flavoprotein, HI0933 98.8 1.1E-07 2.3E-12 98.8 14.7 58 285-344 104-161 (400)
146 PRK08163 salicylate hydroxylas 98.8 8.9E-08 1.9E-12 99.6 14.2 57 288-345 111-168 (396)
147 COG0644 FixC Dehydrogenases (f 98.7 1.2E-07 2.6E-12 98.4 14.0 57 289-345 98-154 (396)
148 PF00890 FAD_binding_2: FAD bi 98.7 1.3E-07 2.9E-12 99.0 13.7 60 285-344 140-204 (417)
149 PTZ00383 malate:quinone oxidor 98.7 6.9E-07 1.5E-11 94.5 18.7 58 286-344 211-274 (497)
150 PRK08274 tricarballylate dehyd 98.7 7.5E-07 1.6E-11 94.7 19.2 57 287-343 132-192 (466)
151 PRK12844 3-ketosteroid-delta-1 98.7 4.4E-07 9.6E-12 98.1 17.3 60 285-344 207-270 (557)
152 COG0654 UbiH 2-polyprenyl-6-me 98.7 2.9E-07 6.2E-12 95.4 15.3 58 287-345 105-164 (387)
153 PLN02661 Putative thiazole syn 98.7 5.7E-07 1.2E-11 89.4 16.1 113 293-405 180-325 (357)
154 COG2509 Uncharacterized FAD-de 98.7 2.6E-07 5.6E-12 92.5 13.4 84 263-346 149-233 (486)
155 PRK05714 2-octaprenyl-3-methyl 98.7 6.3E-07 1.4E-11 93.5 17.2 58 287-345 113-170 (405)
156 PRK09126 hypothetical protein; 98.7 3.6E-07 7.8E-12 94.9 15.3 56 289-345 113-169 (392)
157 PF01494 FAD_binding_3: FAD bi 98.7 7E-07 1.5E-11 91.1 17.0 58 287-345 112-174 (356)
158 PRK07608 ubiquinone biosynthes 98.7 2.6E-07 5.6E-12 95.9 13.7 57 287-345 112-169 (388)
159 PRK06481 fumarate reductase fl 98.7 1.1E-06 2.3E-11 94.2 18.6 62 286-347 190-256 (506)
160 PRK07364 2-octaprenyl-6-methox 98.7 1.3E-06 2.8E-11 91.5 18.7 57 288-345 123-183 (415)
161 TIGR01373 soxB sarcosine oxida 98.7 5.9E-07 1.3E-11 93.8 16.0 57 286-343 183-240 (407)
162 PRK08020 ubiF 2-octaprenyl-3-m 98.7 6.8E-07 1.5E-11 92.8 16.3 57 288-345 114-171 (391)
163 TIGR03364 HpnW_proposed FAD de 98.6 1.3E-06 2.9E-11 89.7 18.2 54 285-344 144-198 (365)
164 PRK07588 hypothetical protein; 98.6 3.7E-07 8E-12 94.8 14.0 57 288-346 105-161 (391)
165 PRK08013 oxidoreductase; Provi 98.6 7.5E-07 1.6E-11 92.7 16.2 58 287-345 112-170 (400)
166 TIGR02028 ChlP geranylgeranyl 98.6 1E-07 2.2E-12 98.9 9.6 31 73-103 1-31 (398)
167 PRK13977 myosin-cross-reactive 98.6 5.3E-07 1.2E-11 95.1 14.8 92 255-346 192-296 (576)
168 COG1053 SdhA Succinate dehydro 98.6 1E-06 2.2E-11 94.1 17.2 49 71-120 5-53 (562)
169 PRK12839 hypothetical protein; 98.6 1.2E-06 2.6E-11 94.8 18.0 56 69-133 5-63 (572)
170 PRK10015 oxidoreductase; Provi 98.6 3.2E-07 6.9E-12 96.1 13.0 57 288-345 110-166 (429)
171 PRK06834 hypothetical protein; 98.6 8.4E-07 1.8E-11 94.4 16.2 58 287-345 101-158 (488)
172 PRK06184 hypothetical protein; 98.6 1E-06 2.2E-11 94.6 17.0 57 288-345 111-170 (502)
173 PRK07333 2-octaprenyl-6-methox 98.6 4.1E-07 9E-12 94.8 13.7 58 287-345 112-169 (403)
174 PRK08849 2-octaprenyl-3-methyl 98.6 6.8E-07 1.5E-11 92.5 15.1 56 289-345 113-169 (384)
175 PRK01747 mnmC bifunctional tRN 98.6 6.6E-07 1.4E-11 99.2 15.1 58 285-344 407-464 (662)
176 PRK08850 2-octaprenyl-6-methox 98.6 1.3E-06 2.9E-11 91.1 16.5 57 288-345 113-170 (405)
177 PRK07121 hypothetical protein; 98.6 2.1E-06 4.5E-11 91.9 18.3 60 285-344 176-240 (492)
178 PRK06175 L-aspartate oxidase; 98.6 2.6E-06 5.6E-11 89.3 18.6 58 286-343 128-189 (433)
179 PLN02463 lycopene beta cyclase 98.6 5.3E-07 1.1E-11 94.3 13.2 32 71-102 27-58 (447)
180 TIGR02032 GG-red-SF geranylger 98.6 2E-07 4.3E-12 92.6 9.6 31 73-103 1-31 (295)
181 PRK07494 2-octaprenyl-6-methox 98.6 3.7E-07 8.1E-12 94.7 11.6 57 287-345 112-169 (388)
182 TIGR02734 crtI_fam phytoene de 98.6 1E-06 2.2E-11 94.6 14.8 58 286-343 219-276 (502)
183 PRK13369 glycerol-3-phosphate 98.6 1.1E-06 2.4E-11 94.0 15.0 59 285-344 154-216 (502)
184 PRK07190 hypothetical protein; 98.5 7.1E-07 1.5E-11 94.9 13.2 57 288-345 111-167 (487)
185 PRK05335 tRNA (uracil-5-)-meth 98.5 1.6E-06 3.4E-11 88.5 15.0 31 72-102 2-32 (436)
186 PRK07573 sdhA succinate dehydr 98.5 2.1E-06 4.6E-11 94.1 17.1 55 290-344 174-233 (640)
187 TIGR01790 carotene-cycl lycope 98.5 4.5E-07 9.8E-12 94.0 11.3 30 74-103 1-30 (388)
188 TIGR01984 UbiH 2-polyprenyl-6- 98.5 1.5E-06 3.2E-11 90.0 15.0 57 287-344 106-163 (382)
189 TIGR01320 mal_quin_oxido malat 98.5 2.8E-06 6E-11 90.1 17.1 60 285-344 177-241 (483)
190 TIGR01988 Ubi-OHases Ubiquinon 98.5 2.1E-06 4.6E-11 88.8 16.0 58 287-345 107-165 (385)
191 TIGR02730 carot_isom carotene 98.5 7.1E-07 1.5E-11 95.5 12.6 59 286-344 229-287 (493)
192 PRK07045 putative monooxygenas 98.5 1.7E-06 3.7E-11 89.7 14.9 59 287-345 107-167 (388)
193 PLN02697 lycopene epsilon cycl 98.5 7.4E-07 1.6E-11 94.8 12.2 32 71-102 107-138 (529)
194 PRK08244 hypothetical protein; 98.5 1.7E-06 3.7E-11 92.6 15.2 58 287-345 101-161 (493)
195 PRK08243 4-hydroxybenzoate 3-m 98.5 1.3E-06 2.7E-11 90.8 13.4 56 289-345 106-165 (392)
196 PRK05257 malate:quinone oxidor 98.5 3.6E-06 7.9E-11 89.3 16.9 59 286-344 183-247 (494)
197 PF01946 Thi4: Thi4 family; PD 98.5 1.3E-06 2.7E-11 79.8 11.4 33 71-103 16-48 (230)
198 PRK05868 hypothetical protein; 98.5 7.6E-07 1.6E-11 91.6 11.5 47 298-345 116-162 (372)
199 PRK08132 FAD-dependent oxidore 98.5 4E-06 8.7E-11 91.0 17.7 58 287-345 126-187 (547)
200 PRK11101 glpA sn-glycerol-3-ph 98.5 5.8E-06 1.3E-10 89.3 18.8 60 285-344 148-212 (546)
201 PRK06185 hypothetical protein; 98.5 4.8E-06 1E-10 87.0 17.6 58 287-344 109-170 (407)
202 PRK05732 2-octaprenyl-6-methox 98.5 2.3E-06 4.9E-11 89.0 14.8 57 288-345 114-171 (395)
203 PRK12834 putative FAD-binding 98.5 4E-06 8.6E-11 90.8 16.9 35 69-103 1-35 (549)
204 PRK12266 glpD glycerol-3-phosp 98.5 2.6E-06 5.7E-11 91.2 15.3 59 285-344 154-217 (508)
205 PTZ00139 Succinate dehydrogena 98.5 1.1E-05 2.4E-10 88.2 20.3 59 285-343 165-229 (617)
206 PTZ00363 rab-GDP dissociation 98.5 1.4E-06 3.1E-11 90.7 12.8 60 285-344 231-291 (443)
207 COG0665 DadA Glycine/D-amino a 98.5 1.9E-06 4.1E-11 89.3 13.7 58 285-344 155-213 (387)
208 PRK07233 hypothetical protein; 98.5 8.3E-07 1.8E-11 93.5 11.0 57 285-342 197-253 (434)
209 PF01134 GIDA: Glucose inhibit 98.4 6.3E-07 1.4E-11 90.5 8.7 29 74-102 1-29 (392)
210 PLN00093 geranylgeranyl diphos 98.4 2.1E-06 4.6E-11 90.2 13.0 33 71-103 38-70 (450)
211 PF12831 FAD_oxidored: FAD dep 98.4 2.5E-07 5.4E-12 96.9 5.8 43 74-125 1-43 (428)
212 TIGR01813 flavo_cyto_c flavocy 98.4 6.6E-06 1.4E-10 86.8 16.5 60 285-344 129-193 (439)
213 PF13738 Pyr_redox_3: Pyridine 98.4 2.5E-06 5.5E-11 79.8 12.0 96 249-345 1-142 (203)
214 KOG2820 FAD-dependent oxidored 98.4 2.6E-06 5.6E-11 82.1 11.8 61 286-346 153-215 (399)
215 PF13454 NAD_binding_9: FAD-NA 98.4 1.4E-06 3.1E-11 77.7 9.5 27 76-102 1-32 (156)
216 PRK13339 malate:quinone oxidor 98.4 1.2E-05 2.6E-10 84.8 17.8 58 286-344 184-248 (497)
217 PRK09078 sdhA succinate dehydr 98.4 1.9E-05 4.2E-10 86.1 19.9 60 285-344 148-213 (598)
218 PRK11445 putative oxidoreducta 98.4 8.9E-06 1.9E-10 83.1 16.1 53 291-345 104-159 (351)
219 PRK06183 mhpA 3-(3-hydroxyphen 98.4 7.5E-06 1.6E-10 88.6 16.3 58 287-345 114-176 (538)
220 COG1232 HemY Protoporphyrinoge 98.4 1.1E-06 2.5E-11 90.4 9.3 57 284-341 210-266 (444)
221 PRK06617 2-octaprenyl-6-methox 98.4 8.3E-06 1.8E-10 84.1 15.9 57 287-345 105-162 (374)
222 TIGR02023 BchP-ChlP geranylger 98.4 1.7E-06 3.8E-11 89.6 10.7 31 73-103 1-31 (388)
223 PRK07803 sdhA succinate dehydr 98.4 2.6E-05 5.5E-10 85.6 20.2 32 72-103 8-39 (626)
224 PRK15317 alkyl hydroperoxide r 98.4 3.3E-06 7.2E-11 90.7 13.0 100 245-345 211-324 (517)
225 PRK08958 sdhA succinate dehydr 98.4 1.7E-05 3.7E-10 86.3 18.6 59 285-343 142-206 (588)
226 TIGR03140 AhpF alkyl hydropero 98.4 4.1E-06 8.8E-11 90.0 13.5 100 245-345 212-325 (515)
227 PRK05945 sdhA succinate dehydr 98.4 1.4E-05 3.1E-10 86.9 17.9 59 286-344 135-198 (575)
228 PF13450 NAD_binding_8: NAD(P) 98.4 5.1E-07 1.1E-11 68.0 4.6 36 77-121 1-36 (68)
229 PRK07057 sdhA succinate dehydr 98.4 2.7E-05 5.9E-10 84.8 19.8 59 286-344 148-212 (591)
230 PRK12835 3-ketosteroid-delta-1 98.4 1.5E-05 3.2E-10 86.7 17.6 63 285-347 212-280 (584)
231 PRK12843 putative FAD-binding 98.3 1.7E-05 3.7E-10 86.3 17.8 61 285-345 220-284 (578)
232 COG1231 Monoamine oxidase [Ami 98.3 2.6E-06 5.6E-11 86.0 10.4 48 293-341 213-260 (450)
233 PRK08205 sdhA succinate dehydr 98.3 1.5E-05 3.3E-10 86.8 17.4 58 286-343 140-206 (583)
234 PRK06126 hypothetical protein; 98.3 8.5E-06 1.8E-10 88.4 15.3 57 288-345 128-190 (545)
235 KOG2415 Electron transfer flav 98.3 3.2E-06 7E-11 83.3 10.4 59 287-345 184-258 (621)
236 PLN00128 Succinate dehydrogena 98.3 5.1E-05 1.1E-09 83.1 21.0 60 285-344 186-251 (635)
237 PLN02464 glycerol-3-phosphate 98.3 9.2E-06 2E-10 88.9 15.0 60 285-344 231-297 (627)
238 PLN02172 flavin-containing mon 98.3 1.5E-05 3.3E-10 83.9 15.9 101 245-346 10-178 (461)
239 PRK09754 phenylpropionate diox 98.3 4.2E-06 9.1E-11 87.0 11.1 98 245-345 3-114 (396)
240 PRK06475 salicylate hydroxylas 98.3 7.5E-06 1.6E-10 85.3 12.5 58 287-345 108-169 (400)
241 TIGR01989 COQ6 Ubiquinone bios 98.3 1.7E-05 3.7E-10 83.5 15.2 58 287-345 118-185 (437)
242 PF05834 Lycopene_cycl: Lycope 98.3 2.5E-06 5.3E-11 87.9 8.4 30 74-103 1-32 (374)
243 PRK09564 coenzyme A disulfide 98.3 4.8E-06 1E-10 88.0 10.8 101 246-347 1-119 (444)
244 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 7.8E-06 1.7E-10 84.8 12.1 57 288-345 105-165 (390)
245 PRK06996 hypothetical protein; 98.2 1.1E-05 2.4E-10 83.9 12.9 55 287-342 116-173 (398)
246 PRK07236 hypothetical protein; 98.2 8.2E-06 1.8E-10 84.5 11.6 100 245-345 6-156 (386)
247 PRK07538 hypothetical protein; 98.2 2.9E-05 6.2E-10 81.3 15.2 57 288-345 104-167 (413)
248 PLN02612 phytoene desaturase 98.2 7.1E-06 1.5E-10 88.9 10.9 56 286-341 308-364 (567)
249 PRK07251 pyridine nucleotide-d 98.2 5.8E-05 1.3E-09 79.6 17.5 94 73-224 158-256 (438)
250 PTZ00306 NADH-dependent fumara 98.2 4E-05 8.7E-10 89.8 17.5 34 70-103 407-440 (1167)
251 COG0578 GlpA Glycerol-3-phosph 98.2 7.8E-06 1.7E-10 85.4 9.7 59 285-344 163-226 (532)
252 TIGR01789 lycopene_cycl lycope 98.2 2.2E-05 4.7E-10 80.6 12.7 30 74-103 1-32 (370)
253 PF04820 Trp_halogenase: Trypt 98.2 1.3E-05 2.7E-10 84.5 11.2 58 287-345 155-213 (454)
254 COG1252 Ndh NADH dehydrogenase 98.1 1.1E-05 2.3E-10 82.1 9.4 100 245-348 3-116 (405)
255 KOG2844 Dimethylglycine dehydr 98.1 2.8E-05 6.1E-10 81.2 12.1 71 271-344 174-244 (856)
256 TIGR01350 lipoamide_DH dihydro 98.1 4.6E-05 1E-09 80.9 14.4 94 73-224 171-272 (461)
257 TIGR03169 Nterm_to_SelD pyridi 98.1 1.2E-05 2.5E-10 82.7 9.4 97 247-347 1-111 (364)
258 PTZ00318 NADH dehydrogenase-li 98.1 1.7E-05 3.6E-10 83.2 10.7 101 245-347 10-129 (424)
259 COG1233 Phytoene dehydrogenase 98.1 3.3E-06 7.2E-11 89.9 5.3 57 285-341 223-279 (487)
260 PF07992 Pyr_redox_2: Pyridine 98.1 9.8E-06 2.1E-10 75.6 7.8 101 247-347 1-126 (201)
261 PRK14989 nitrite reductase sub 98.1 1.6E-05 3.5E-10 89.5 10.9 99 246-347 4-117 (847)
262 PRK07208 hypothetical protein; 98.1 4.7E-06 1E-10 89.0 5.8 57 286-342 218-279 (479)
263 TIGR02032 GG-red-SF geranylger 98.1 4E-05 8.7E-10 76.0 12.2 97 247-344 2-149 (295)
264 PRK13512 coenzyme A disulfide 98.1 1.7E-05 3.7E-10 83.5 9.9 100 246-346 2-120 (438)
265 TIGR02485 CobZ_N-term precorri 98.0 0.00011 2.5E-09 77.2 16.0 58 286-343 123-183 (432)
266 PLN02927 antheraxanthin epoxid 98.0 0.00021 4.7E-09 77.7 18.0 42 303-345 209-250 (668)
267 PRK12770 putative glutamate sy 98.0 2E-05 4.4E-10 80.5 9.8 103 242-344 15-132 (352)
268 TIGR02374 nitri_red_nirB nitri 98.0 1.5E-05 3.3E-10 89.7 9.5 97 248-347 1-112 (785)
269 PF06039 Mqo: Malate:quinone o 98.0 6.8E-05 1.5E-09 76.2 12.7 95 287-384 182-292 (488)
270 PF01134 GIDA: Glucose inhibit 98.0 6E-05 1.3E-09 76.4 12.0 94 247-341 1-150 (392)
271 PRK12779 putative bifunctional 98.0 2E-05 4.2E-10 89.8 9.5 93 244-345 305-407 (944)
272 KOG0029 Amine oxidase [Seconda 98.0 7.4E-06 1.6E-10 86.4 5.6 42 71-121 14-55 (501)
273 PRK07236 hypothetical protein; 98.0 9.2E-05 2E-09 76.7 13.4 32 72-103 6-37 (386)
274 COG0445 GidA Flavin-dependent 98.0 2.1E-05 4.6E-10 80.8 8.2 32 71-102 3-34 (621)
275 PRK10262 thioredoxin reductase 98.0 0.00012 2.6E-09 73.8 13.8 99 245-346 6-120 (321)
276 PLN02463 lycopene beta cyclase 98.0 5.5E-05 1.2E-09 79.3 11.5 97 246-344 29-170 (447)
277 TIGR00031 UDP-GALP_mutase UDP- 98.0 9.2E-06 2E-10 82.7 5.4 42 72-122 1-42 (377)
278 TIGR03143 AhpF_homolog putativ 97.9 8.7E-05 1.9E-09 80.5 13.1 98 246-346 5-117 (555)
279 PRK04965 NADH:flavorubredoxin 97.9 6.8E-05 1.5E-09 77.4 11.4 98 246-347 3-115 (377)
280 TIGR01316 gltA glutamate synth 97.9 2.6E-05 5.5E-10 82.4 7.9 92 244-345 132-233 (449)
281 PRK09853 putative selenate red 97.9 5.5E-05 1.2E-09 85.3 10.8 91 244-345 538-637 (1019)
282 PRK11749 dihydropyrimidine deh 97.9 2.7E-05 5.8E-10 82.6 7.8 90 243-342 138-236 (457)
283 KOG2665 Predicted FAD-dependen 97.9 0.0001 2.2E-09 70.5 10.2 69 288-359 198-270 (453)
284 COG3380 Predicted NAD/FAD-depe 97.9 1.8E-05 3.9E-10 74.2 4.9 40 73-121 2-41 (331)
285 COG0492 TrxB Thioredoxin reduc 97.8 0.0008 1.7E-08 66.7 16.7 99 246-347 4-119 (305)
286 TIGR01424 gluta_reduc_2 glutat 97.8 0.00013 2.8E-09 77.1 11.7 95 247-347 4-146 (446)
287 TIGR01318 gltD_gamma_fam gluta 97.8 5.6E-05 1.2E-09 80.1 8.8 92 244-345 140-240 (467)
288 PF00743 FMO-like: Flavin-bind 97.8 0.00026 5.5E-09 75.8 13.6 136 246-384 2-194 (531)
289 PLN02576 protoporphyrinogen ox 97.8 2.3E-05 5E-10 84.1 5.6 41 72-121 12-53 (496)
290 PRK06753 hypothetical protein; 97.8 0.00022 4.8E-09 73.5 12.5 98 247-345 2-154 (373)
291 PLN02268 probable polyamine ox 97.8 2.4E-05 5.2E-10 82.4 5.3 48 292-341 203-250 (435)
292 PRK11883 protoporphyrinogen ox 97.8 2.3E-05 5E-10 82.9 5.2 53 288-341 220-273 (451)
293 PRK07845 flavoprotein disulfid 97.8 0.0001 2.2E-09 78.3 9.9 98 246-345 2-153 (466)
294 TIGR00562 proto_IX_ox protopor 97.8 2.5E-05 5.3E-10 83.1 5.3 40 301-341 238-277 (462)
295 TIGR02733 desat_CrtD C-3',4' d 97.8 2.7E-05 5.9E-10 83.4 5.3 59 284-342 230-293 (492)
296 PRK12831 putative oxidoreducta 97.7 6.8E-05 1.5E-09 79.4 7.9 94 243-345 138-243 (464)
297 COG3349 Uncharacterized conser 97.7 3E-05 6.4E-10 79.9 5.0 41 73-122 1-41 (485)
298 PLN02852 ferredoxin-NADP+ redu 97.7 8E-05 1.7E-09 78.5 8.2 91 244-344 25-127 (491)
299 PRK05249 soluble pyridine nucl 97.7 0.00021 4.7E-09 75.8 11.6 97 246-346 6-152 (461)
300 KOG0399 Glutamate synthase [Am 97.7 0.00084 1.8E-08 74.1 15.7 93 244-346 1784-1885(2142)
301 COG2907 Predicted NAD/FAD-bind 97.7 0.00015 3.3E-09 70.4 9.1 52 289-341 220-271 (447)
302 PF06100 Strep_67kDa_ant: Stre 97.7 7.4E-05 1.6E-09 76.8 7.3 85 256-343 174-274 (500)
303 COG0446 HcaD Uncharacterized N 97.7 0.00027 5.9E-09 73.7 11.8 93 73-222 137-238 (415)
304 COG0562 Glf UDP-galactopyranos 97.7 4.2E-05 9.2E-10 73.5 5.0 42 72-122 1-42 (374)
305 PLN02568 polyamine oxidase 97.7 4.3E-05 9.3E-10 82.0 5.7 40 301-341 255-294 (539)
306 PRK08010 pyridine nucleotide-d 97.7 0.00026 5.6E-09 74.8 11.4 97 247-347 5-135 (441)
307 KOG4254 Phytoene desaturase [C 97.7 0.00042 9.2E-09 69.6 11.9 58 285-342 263-320 (561)
308 KOG1399 Flavin-containing mono 97.7 0.00088 1.9E-08 69.7 14.9 136 245-384 6-197 (448)
309 PRK06467 dihydrolipoamide dehy 97.7 0.00022 4.7E-09 75.9 10.6 96 246-345 5-150 (471)
310 PRK05976 dihydrolipoamide dehy 97.7 0.00028 6E-09 75.2 11.3 98 246-345 5-156 (472)
311 COG2072 TrkA Predicted flavopr 97.7 0.001 2.2E-08 69.8 15.1 136 246-384 9-186 (443)
312 TIGR01317 GOGAT_sm_gam glutama 97.7 0.00012 2.5E-09 78.1 8.0 91 244-344 142-242 (485)
313 PLN02697 lycopene epsilon cycl 97.7 0.00037 8E-09 74.4 11.7 97 246-343 109-248 (529)
314 KOG2404 Fumarate reductase, fl 97.6 0.00032 7E-09 67.4 9.8 38 74-120 11-48 (477)
315 PRK06327 dihydrolipoamide dehy 97.6 0.00056 1.2E-08 72.9 12.9 30 73-102 184-213 (475)
316 TIGR01790 carotene-cycl lycope 97.6 0.00051 1.1E-08 71.2 12.1 96 247-343 1-141 (388)
317 PRK12778 putative bifunctional 97.6 0.00014 3.1E-09 81.8 8.4 93 244-345 430-532 (752)
318 PRK05192 tRNA uridine 5-carbox 97.6 0.00053 1.1E-08 73.5 11.9 95 247-342 6-156 (618)
319 PRK08255 salicylyl-CoA 5-hydro 97.6 7.9E-05 1.7E-09 83.8 6.0 31 73-103 1-33 (765)
320 PRK12837 3-ketosteroid-delta-1 97.6 7.7E-05 1.7E-09 80.1 5.7 31 72-103 7-37 (513)
321 PRK12814 putative NADPH-depend 97.6 0.00016 3.5E-09 79.8 8.2 91 244-344 192-291 (652)
322 PRK12416 protoporphyrinogen ox 97.6 6.7E-05 1.5E-09 79.8 5.1 51 287-340 227-277 (463)
323 PRK12775 putative trifunctiona 97.6 0.00019 4.2E-09 82.6 8.9 92 245-345 430-532 (1006)
324 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.00034 7.4E-09 73.5 10.2 95 73-224 138-236 (427)
325 TIGR02731 phytoene_desat phyto 97.6 7.8E-05 1.7E-09 79.0 5.1 56 286-341 213-274 (453)
326 PRK06912 acoL dihydrolipoamide 97.6 0.00063 1.4E-08 72.1 11.9 94 73-224 171-271 (458)
327 PRK06116 glutathione reductase 97.6 0.00036 7.9E-09 73.8 10.1 93 247-347 6-147 (450)
328 TIGR03315 Se_ygfK putative sel 97.6 0.00029 6.3E-09 80.0 9.6 90 245-345 537-635 (1012)
329 PRK12810 gltD glutamate syntha 97.5 0.00022 4.8E-09 75.8 8.2 90 244-343 142-240 (471)
330 PRK06416 dihydrolipoamide dehy 97.5 0.00062 1.3E-08 72.3 11.6 95 73-225 173-276 (462)
331 TIGR03219 salicylate_mono sali 97.5 0.00084 1.8E-08 70.3 12.4 97 247-344 2-160 (414)
332 PRK12809 putative oxidoreducta 97.5 0.00024 5.2E-09 78.4 8.5 91 244-344 309-408 (639)
333 PRK09897 hypothetical protein; 97.5 0.0012 2.6E-08 70.5 13.4 98 246-344 2-167 (534)
334 KOG1335 Dihydrolipoamide dehyd 97.5 0.0043 9.4E-08 61.3 15.7 95 73-225 212-318 (506)
335 PLN02676 polyamine oxidase 97.5 0.00012 2.7E-09 77.8 5.6 40 301-341 245-284 (487)
336 COG0493 GltD NADPH-dependent g 97.5 0.00024 5.3E-09 74.1 7.5 89 245-343 123-220 (457)
337 PRK14694 putative mercuric red 97.5 0.00098 2.1E-08 70.9 12.3 93 73-224 179-276 (468)
338 PLN02985 squalene monooxygenas 97.5 0.00012 2.5E-09 78.4 5.0 34 70-103 41-74 (514)
339 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.00054 1.2E-08 71.5 9.7 30 73-102 174-203 (454)
340 PLN02529 lysine-specific histo 97.5 0.00014 3E-09 80.1 5.7 33 71-103 159-191 (738)
341 PRK06370 mercuric reductase; V 97.5 0.0011 2.4E-08 70.4 12.4 30 73-102 172-201 (463)
342 PRK12769 putative oxidoreducta 97.5 0.00031 6.8E-09 77.8 8.3 91 244-344 326-425 (654)
343 PTZ00188 adrenodoxin reductase 97.5 0.00047 1E-08 71.8 8.9 91 244-344 38-139 (506)
344 KOG1336 Monodehydroascorbate/f 97.4 0.00044 9.6E-09 70.3 8.3 98 245-345 74-183 (478)
345 PRK08294 phenol 2-monooxygenas 97.4 0.0003 6.4E-09 77.4 7.7 36 68-103 28-64 (634)
346 PF00070 Pyr_redox: Pyridine n 97.4 0.00066 1.4E-08 52.9 7.6 29 74-102 1-29 (80)
347 TIGR02053 MerA mercuric reduct 97.4 0.0012 2.7E-08 70.1 11.6 30 73-102 167-196 (463)
348 PRK06753 hypothetical protein; 97.4 0.00015 3.1E-09 74.8 4.4 31 73-103 1-31 (373)
349 PRK01438 murD UDP-N-acetylmura 97.4 0.00058 1.3E-08 72.9 9.0 89 245-357 16-105 (480)
350 PF05834 Lycopene_cycl: Lycope 97.4 0.0012 2.7E-08 67.9 11.0 95 248-344 2-143 (374)
351 KOG0685 Flavin-containing amin 97.3 0.00026 5.5E-09 71.9 5.3 42 71-121 20-62 (498)
352 PTZ00367 squalene epoxidase; P 97.3 0.00019 4.1E-09 77.4 4.7 33 71-103 32-64 (567)
353 TIGR02732 zeta_caro_desat caro 97.3 0.00024 5.2E-09 75.5 5.2 63 285-347 218-288 (474)
354 PRK06115 dihydrolipoamide dehy 97.3 0.0019 4.1E-08 68.6 11.9 94 247-344 5-149 (466)
355 PLN02507 glutathione reductase 97.3 0.0019 4.1E-08 69.1 12.0 95 73-225 204-304 (499)
356 TIGR01421 gluta_reduc_1 glutat 97.3 0.0012 2.5E-08 69.9 10.0 94 73-224 167-268 (450)
357 TIGR01789 lycopene_cycl lycope 97.3 0.0012 2.6E-08 67.8 9.8 94 247-345 1-140 (370)
358 TIGR02023 BchP-ChlP geranylger 97.3 0.0026 5.6E-08 66.0 12.4 97 247-345 2-157 (388)
359 TIGR00136 gidA glucose-inhibit 97.3 0.0025 5.5E-08 68.3 12.1 97 247-344 2-155 (617)
360 PLN02328 lysine-specific histo 97.3 0.00033 7.1E-09 77.7 5.6 34 70-103 236-269 (808)
361 KOG1298 Squalene monooxygenase 97.3 0.0011 2.5E-08 65.3 8.5 33 70-102 43-75 (509)
362 PF12831 FAD_oxidored: FAD dep 97.3 0.00029 6.2E-09 74.0 4.7 95 247-341 1-148 (428)
363 PRK14727 putative mercuric red 97.2 0.003 6.5E-08 67.4 12.5 93 73-224 189-286 (479)
364 PRK07818 dihydrolipoamide dehy 97.2 0.0023 4.9E-08 68.1 11.6 30 73-102 173-202 (466)
365 KOG2311 NAD/FAD-utilizing prot 97.2 0.00091 2E-08 67.6 7.7 32 72-103 28-59 (679)
366 PF00732 GMC_oxred_N: GMC oxid 97.2 0.00023 5E-09 70.8 3.7 65 289-355 196-268 (296)
367 PRK12771 putative glutamate sy 97.2 0.00089 1.9E-08 72.9 8.5 90 244-344 136-235 (564)
368 PRK13984 putative oxidoreducta 97.2 0.00092 2E-08 73.5 8.4 90 244-343 282-380 (604)
369 PF13454 NAD_binding_9: FAD-NA 97.2 0.0037 8E-08 55.7 10.7 41 300-341 114-155 (156)
370 PRK07846 mycothione reductase; 97.2 0.0033 7.1E-08 66.5 11.9 30 73-102 167-196 (451)
371 KOG2852 Possible oxidoreductas 97.2 0.0029 6.3E-08 60.1 10.0 34 69-102 7-46 (380)
372 PRK13748 putative mercuric red 97.2 0.0034 7.4E-08 68.5 12.1 93 73-224 271-368 (561)
373 TIGR02462 pyranose_ox pyranose 97.2 0.00045 9.7E-09 73.7 5.0 31 73-103 1-31 (544)
374 PTZ00052 thioredoxin reductase 97.1 0.0031 6.6E-08 67.6 11.3 93 73-224 183-281 (499)
375 PTZ00058 glutathione reductase 97.1 0.0025 5.3E-08 68.9 10.5 31 72-102 237-267 (561)
376 PLN02487 zeta-carotene desatur 97.1 0.00052 1.1E-08 74.0 5.2 59 284-342 293-359 (569)
377 TIGR03219 salicylate_mono sali 97.1 0.00061 1.3E-08 71.3 5.4 30 74-103 2-32 (414)
378 TIGR03452 mycothione_red mycot 97.1 0.003 6.4E-08 66.9 10.4 30 73-102 170-199 (452)
379 PRK02106 choline dehydrogenase 97.1 0.00053 1.1E-08 74.6 4.8 34 70-103 3-37 (560)
380 TIGR01438 TGR thioredoxin and 97.1 0.0043 9.4E-08 66.1 11.6 30 73-102 181-210 (484)
381 TIGR01423 trypano_reduc trypan 97.1 0.0028 6.1E-08 67.5 9.9 94 73-224 188-291 (486)
382 TIGR01372 soxA sarcosine oxida 97.0 0.0042 9.1E-08 72.0 11.7 101 245-346 163-289 (985)
383 PRK06292 dihydrolipoamide dehy 97.0 0.0069 1.5E-07 64.3 12.6 30 73-102 170-199 (460)
384 TIGR02028 ChlP geranylgeranyl 97.0 0.0069 1.5E-07 62.9 12.2 98 247-345 2-162 (398)
385 TIGR00137 gid_trmFO tRNA:m(5)U 97.0 0.00069 1.5E-08 69.9 4.4 29 74-102 2-30 (433)
386 PLN03000 amine oxidase 97.0 0.00093 2E-08 74.3 5.3 32 72-103 184-215 (881)
387 PLN02976 amine oxidase 96.9 0.001 2.2E-08 76.7 5.6 44 69-121 690-733 (1713)
388 COG3573 Predicted oxidoreducta 96.9 0.0013 2.8E-08 63.6 5.1 42 72-120 5-46 (552)
389 KOG0404 Thioredoxin reductase 96.9 0.0092 2E-07 54.7 10.2 100 245-347 8-128 (322)
390 KOG2853 Possible oxidoreductas 96.9 0.0011 2.3E-08 64.4 4.4 51 71-121 85-139 (509)
391 PLN02546 glutathione reductase 96.9 0.0069 1.5E-07 65.5 11.0 30 73-102 253-282 (558)
392 PF01946 Thi4: Thi4 family; PD 96.8 0.013 2.7E-07 54.1 10.6 101 246-346 18-168 (230)
393 KOG2614 Kynurenine 3-monooxyge 96.8 0.0013 2.7E-08 66.0 4.5 32 72-103 2-33 (420)
394 PRK06567 putative bifunctional 96.8 0.0023 5.1E-08 71.7 6.9 35 243-277 381-415 (1028)
395 KOG2495 NADH-dehydrogenase (ub 96.8 0.008 1.7E-07 60.4 9.6 103 244-348 54-175 (491)
396 PLN00093 geranylgeranyl diphos 96.8 0.019 4.1E-07 60.5 13.1 100 245-345 39-201 (450)
397 COG1251 NirB NAD(P)H-nitrite r 96.7 0.0076 1.7E-07 64.7 9.8 99 246-347 4-117 (793)
398 COG3380 Predicted NAD/FAD-depe 96.7 0.0041 8.9E-08 58.7 6.9 93 247-341 3-158 (331)
399 KOG2960 Protein involved in th 96.7 0.00047 1E-08 62.2 0.7 31 72-102 76-108 (328)
400 COG2303 BetA Choline dehydroge 96.7 0.0016 3.4E-08 70.3 4.3 56 292-347 209-270 (542)
401 TIGR00137 gid_trmFO tRNA:m(5)U 96.6 0.0067 1.5E-07 62.7 8.4 34 247-280 2-35 (433)
402 PTZ00153 lipoamide dehydrogena 96.6 0.012 2.5E-07 64.8 10.7 30 73-102 313-342 (659)
403 COG0445 GidA Flavin-dependent 96.6 0.0059 1.3E-07 63.4 7.5 94 247-341 6-156 (621)
404 PRK01438 murD UDP-N-acetylmura 96.6 0.005 1.1E-07 65.7 7.4 30 73-102 17-46 (480)
405 KOG1276 Protoporphyrinogen oxi 96.6 0.0026 5.6E-08 63.8 4.6 40 72-120 11-52 (491)
406 PRK08401 L-aspartate oxidase; 96.6 0.028 6.1E-07 59.7 12.8 98 246-345 2-177 (466)
407 COG1148 HdrA Heterodisulfide r 96.3 0.0079 1.7E-07 61.3 6.4 79 245-324 124-215 (622)
408 PLN02985 squalene monooxygenas 96.3 0.027 5.9E-07 60.4 10.6 33 246-278 44-76 (514)
409 KOG2311 NAD/FAD-utilizing prot 96.2 0.021 4.5E-07 58.2 8.3 31 247-277 30-60 (679)
410 PRK08294 phenol 2-monooxygenas 96.2 0.056 1.2E-06 59.6 12.6 100 246-345 33-212 (634)
411 TIGR01812 sdhA_frdA_Gneg succi 96.1 0.061 1.3E-06 58.8 12.8 51 293-343 136-191 (566)
412 TIGR01810 betA choline dehydro 96.1 0.0049 1.1E-07 66.7 3.8 57 291-347 199-259 (532)
413 PRK06854 adenylylsulfate reduc 96.0 0.07 1.5E-06 58.6 12.3 52 292-343 138-195 (608)
414 PLN02785 Protein HOTHEAD 96.0 0.0069 1.5E-07 65.9 4.4 31 71-102 54-84 (587)
415 KOG2614 Kynurenine 3-monooxyge 95.9 0.037 8.1E-07 55.7 8.9 34 246-279 3-36 (420)
416 TIGR03862 flavo_PP4765 unchara 95.9 0.055 1.2E-06 55.2 10.4 84 258-345 57-143 (376)
417 COG3634 AhpF Alkyl hydroperoxi 95.9 0.027 5.8E-07 55.1 7.4 98 245-342 211-324 (520)
418 KOG0042 Glycerol-3-phosphate d 95.9 0.0039 8.5E-08 64.2 1.9 34 70-103 65-98 (680)
419 TIGR00551 nadB L-aspartate oxi 95.8 0.086 1.9E-06 56.4 12.0 56 289-344 131-190 (488)
420 KOG3855 Monooxygenase involved 95.8 0.012 2.5E-07 59.0 4.7 32 71-102 35-70 (481)
421 PRK08275 putative oxidoreducta 95.8 0.1 2.2E-06 56.8 12.4 58 287-344 138-201 (554)
422 PF13450 NAD_binding_8: NAD(P) 95.7 0.018 4E-07 43.1 4.5 31 250-280 1-31 (68)
423 PRK06263 sdhA succinate dehydr 95.6 0.11 2.3E-06 56.4 11.9 59 286-344 134-198 (543)
424 PRK07804 L-aspartate oxidase; 95.6 0.13 2.9E-06 55.6 12.4 53 289-341 147-208 (541)
425 PRK14106 murD UDP-N-acetylmura 95.5 0.1 2.2E-06 55.3 11.1 31 72-102 5-35 (450)
426 PRK06452 sdhA succinate dehydr 95.5 0.12 2.5E-06 56.4 11.7 53 291-343 141-198 (566)
427 COG4529 Uncharacterized protei 95.4 0.18 3.9E-06 52.1 11.9 100 246-346 2-167 (474)
428 KOG1238 Glucose dehydrogenase/ 95.4 0.016 3.5E-07 61.6 4.2 34 69-102 54-88 (623)
429 PRK08255 salicylyl-CoA 5-hydro 95.3 0.046 9.9E-07 61.8 8.1 33 247-279 2-36 (765)
430 PTZ00367 squalene epoxidase; P 95.2 0.1 2.2E-06 56.6 9.8 33 246-278 34-66 (567)
431 TIGR01811 sdhA_Bsu succinate d 95.2 0.16 3.4E-06 55.8 11.4 44 300-343 147-196 (603)
432 PF00996 GDI: GDP dissociation 95.0 0.031 6.8E-07 58.0 5.0 57 286-343 232-289 (438)
433 PF13434 K_oxygenase: L-lysine 95.0 0.067 1.4E-06 54.2 7.4 100 247-346 4-162 (341)
434 PF02558 ApbA: Ketopantoate re 95.0 0.11 2.4E-06 45.7 8.0 77 248-343 1-79 (151)
435 PF01494 FAD_binding_3: FAD bi 94.9 0.037 8E-07 56.1 5.3 35 247-281 3-37 (356)
436 KOG0405 Pyridine nucleotide-di 94.9 0.18 3.9E-06 49.6 9.3 70 292-367 116-187 (478)
437 COG1206 Gid NAD(FAD)-utilizing 94.8 0.029 6.3E-07 54.5 3.8 30 73-102 4-33 (439)
438 TIGR02352 thiamin_ThiO glycine 94.7 0.089 1.9E-06 53.1 7.3 59 285-344 136-194 (337)
439 KOG1346 Programmed cell death 94.7 0.034 7.3E-07 55.7 3.9 56 297-356 268-323 (659)
440 PRK08626 fumarate reductase fl 94.6 0.33 7.1E-06 53.9 12.0 50 294-343 166-220 (657)
441 PRK06069 sdhA succinate dehydr 94.6 0.38 8.3E-06 52.6 12.4 52 292-343 143-200 (577)
442 KOG2852 Possible oxidoreductas 94.6 0.36 7.7E-06 46.4 10.2 34 245-278 10-49 (380)
443 PRK14106 murD UDP-N-acetylmura 94.5 0.13 2.9E-06 54.3 8.4 80 245-347 5-84 (450)
444 PLN02815 L-aspartate oxidase 94.4 0.44 9.5E-06 52.1 12.4 55 288-342 157-221 (594)
445 PRK06475 salicylate hydroxylas 94.3 0.072 1.6E-06 55.4 5.9 56 246-301 3-59 (400)
446 PRK05868 hypothetical protein; 94.3 0.061 1.3E-06 55.3 5.3 36 246-281 2-37 (372)
447 TIGR01470 cysG_Nterm siroheme 94.3 0.11 2.4E-06 48.4 6.3 33 245-277 9-41 (205)
448 PRK08071 L-aspartate oxidase; 94.2 0.28 6.1E-06 52.7 10.2 55 289-344 133-191 (510)
449 PRK05335 tRNA (uracil-5-)-meth 94.2 0.066 1.4E-06 55.2 5.1 35 246-280 3-37 (436)
450 PRK06184 hypothetical protein; 94.1 0.079 1.7E-06 57.0 5.8 36 246-281 4-39 (502)
451 COG0654 UbiH 2-polyprenyl-6-me 94.1 0.069 1.5E-06 55.3 5.2 56 246-301 3-60 (387)
452 PRK06847 hypothetical protein; 94.1 0.093 2E-06 54.0 6.1 36 245-280 4-39 (375)
453 PRK08163 salicylate hydroxylas 94.1 0.084 1.8E-06 54.8 5.7 36 245-280 4-39 (396)
454 PF01210 NAD_Gly3P_dh_N: NAD-d 93.9 0.067 1.4E-06 47.6 4.0 29 74-102 1-29 (157)
455 TIGR03197 MnmC_Cterm tRNA U-34 93.9 0.11 2.4E-06 53.7 6.2 58 285-344 134-191 (381)
456 COG1635 THI4 Ribulose 1,5-bisp 93.9 0.099 2.1E-06 48.2 5.0 159 246-404 31-256 (262)
457 KOG3851 Sulfide:quinone oxidor 93.9 0.047 1E-06 52.9 3.0 99 245-347 39-149 (446)
458 KOG2755 Oxidoreductase [Genera 93.8 0.087 1.9E-06 49.7 4.6 92 248-346 2-107 (334)
459 PRK07395 L-aspartate oxidase; 93.8 0.41 8.8E-06 52.0 10.6 56 287-342 135-196 (553)
460 PRK08244 hypothetical protein; 93.8 0.095 2E-06 56.2 5.7 35 246-280 3-37 (493)
461 PRK07364 2-octaprenyl-6-methox 93.7 0.15 3.2E-06 53.3 6.7 36 245-280 18-53 (415)
462 KOG3923 D-aspartate oxidase [A 93.6 0.34 7.3E-06 46.8 8.2 48 285-345 150-197 (342)
463 KOG2853 Possible oxidoreductas 93.4 0.6 1.3E-05 45.9 9.6 34 246-279 87-124 (509)
464 PRK07494 2-octaprenyl-6-methox 93.3 0.16 3.5E-06 52.5 6.3 35 246-280 8-42 (388)
465 KOG1298 Squalene monooxygenase 93.3 0.16 3.4E-06 50.7 5.6 32 247-278 47-78 (509)
466 TIGR01176 fum_red_Fp fumarate 93.3 0.94 2E-05 49.5 12.4 52 292-343 138-195 (580)
467 PRK06718 precorrin-2 dehydroge 93.3 0.28 6.1E-06 45.6 7.1 70 245-340 10-79 (202)
468 PRK09231 fumarate reductase fl 93.2 0.79 1.7E-05 50.2 11.6 53 292-344 139-197 (582)
469 PRK08641 sdhA succinate dehydr 93.2 0.91 2E-05 49.8 12.1 32 246-277 4-35 (589)
470 PRK12837 3-ketosteroid-delta-1 93.1 0.79 1.7E-05 49.4 11.4 47 299-345 187-237 (513)
471 PRK07538 hypothetical protein; 93.1 0.14 3E-06 53.5 5.5 35 247-281 2-36 (413)
472 PRK06126 hypothetical protein; 93.1 0.14 3.1E-06 55.6 5.7 36 245-280 7-42 (545)
473 PF02737 3HCDH_N: 3-hydroxyacy 92.9 0.13 2.9E-06 46.9 4.3 29 74-102 1-29 (180)
474 PF03721 UDPG_MGDP_dh_N: UDP-g 92.9 0.12 2.5E-06 47.4 3.9 30 73-102 1-30 (185)
475 COG1893 ApbA Ketopantoate redu 92.9 0.3 6.4E-06 48.7 7.1 76 247-342 2-78 (307)
476 KOG0029 Amine oxidase [Seconda 92.8 0.14 2.9E-06 54.6 4.9 37 244-280 14-50 (501)
477 PRK09126 hypothetical protein; 92.8 0.24 5.3E-06 51.2 6.7 56 246-301 4-65 (392)
478 TIGR01984 UbiH 2-polyprenyl-6- 92.7 0.19 4.2E-06 51.8 5.8 34 247-280 1-35 (382)
479 PRK06185 hypothetical protein; 92.7 0.18 4E-06 52.4 5.7 56 246-301 7-63 (407)
480 PRK07045 putative monooxygenas 92.7 0.19 4.2E-06 52.0 5.8 35 246-280 6-40 (388)
481 PRK05562 precorrin-2 dehydroge 92.7 0.21 4.4E-06 47.0 5.3 34 244-277 24-57 (223)
482 COG0029 NadB Aspartate oxidase 92.6 0.45 9.7E-06 49.3 8.0 31 247-278 9-39 (518)
483 PRK05708 2-dehydropantoate 2-r 92.5 0.6 1.3E-05 46.6 8.8 32 246-277 3-34 (305)
484 COG0569 TrkA K+ transport syst 92.4 0.16 3.4E-06 48.2 4.3 29 74-102 2-30 (225)
485 PF13241 NAD_binding_7: Putati 92.4 0.12 2.5E-06 42.4 2.9 31 72-102 7-37 (103)
486 PRK05714 2-octaprenyl-3-methyl 92.3 0.3 6.4E-06 50.9 6.7 33 246-278 3-35 (405)
487 PRK07588 hypothetical protein; 92.3 0.17 3.7E-06 52.4 4.8 34 247-280 2-35 (391)
488 PF01593 Amino_oxidase: Flavin 92.3 0.13 2.7E-06 53.7 3.8 30 82-120 1-30 (450)
489 PF02737 3HCDH_N: 3-hydroxyacy 92.2 0.16 3.4E-06 46.3 3.8 35 247-281 1-35 (180)
490 PRK09077 L-aspartate oxidase; 92.1 1.6 3.4E-05 47.4 11.9 58 288-345 140-209 (536)
491 TIGR01470 cysG_Nterm siroheme 92.0 0.22 4.8E-06 46.4 4.6 30 73-102 10-39 (205)
492 PF01262 AlaDh_PNT_C: Alanine 92.0 0.21 4.5E-06 45.0 4.3 30 73-102 21-50 (168)
493 COG0686 Ald Alanine dehydrogen 92.0 0.13 2.9E-06 49.7 3.1 31 72-102 168-198 (371)
494 PRK02705 murD UDP-N-acetylmura 91.9 0.17 3.6E-06 53.8 4.2 29 74-102 2-30 (459)
495 PRK06719 precorrin-2 dehydroge 91.9 0.24 5.3E-06 44.0 4.6 31 72-102 13-43 (157)
496 PRK11883 protoporphyrinogen ox 91.9 0.21 4.5E-06 52.8 4.9 35 246-280 1-37 (451)
497 PRK04176 ribulose-1,5-biphosph 91.9 0.45 9.7E-06 46.1 6.8 59 246-304 26-92 (257)
498 PRK08013 oxidoreductase; Provi 91.8 0.29 6.4E-06 50.8 5.9 34 246-279 4-37 (400)
499 PRK07190 hypothetical protein; 91.8 0.26 5.6E-06 52.6 5.5 35 246-280 6-40 (487)
500 TIGR01988 Ubi-OHases Ubiquinon 91.8 0.28 6.1E-06 50.5 5.7 34 247-280 1-34 (385)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=5.6e-85 Score=668.67 Aligned_cols=443 Identities=36% Similarity=0.574 Sum_probs=416.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC-CCCCeeccCCCcchHHHHHhhhhhhHhhhcc-CC
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTG-GVGGTCVLRGCVPKKLLVYASKFSHEFDESN-GF 147 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~-~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~-~~ 147 (551)
+.+||+||||+||||+.||.++++.|.+|+||| +. .+||+|+|+||+|+|.|++.++..+.+.+.. .|
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE----------~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~ 71 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVE----------KGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEY 71 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEe----------ecCCcCceEEeeCccccHHHHHHHHHHHHHhhccccc
Confidence 457999999999999999999999999999999 55 7999999999999999999999998888776 68
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcC---EEEEeCeEEEcCCCCCCCC
Q 008839 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDG---KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g---~~~~~d~lviAtG~~p~~p 224 (551)
|+..... .+||.+++.+++...+.+......+++..+|+++.|++++++++++.+++ +++.++++|||||++|..|
T Consensus 72 Gi~~~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 72 GISAEVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred ceecCCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCC
Confidence 8887654 89999999999997778888888888999999999999999999999965 8999999999999999999
Q ss_pred CCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE
Q 008839 225 DIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302 (551)
Q Consensus 225 ~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 302 (551)
++++.+. ++++++.+.+.+.|++++|||+|++|+|+|..++++|.+||++++.+++++.+|+++++.+.+.|++.|++
T Consensus 151 ~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 151 PGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVK 230 (454)
T ss_pred CCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 9988764 77888877777999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeC
Q 008839 303 FHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~G 380 (551)
+++++.+++++..+++ +.+.+++|+ ++++|.|++|+|++||++.|++++.|++++++|+|.||++++|++|||||+|
T Consensus 231 i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~G 309 (454)
T COG1249 231 ILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIG 309 (454)
T ss_pred EEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEee
Confidence 9999999999987776 788888776 6999999999999999999999999999999999999988888999999999
Q ss_pred cCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccC
Q 008839 381 DVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGL 460 (551)
Q Consensus 381 D~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 460 (551)
||++.+.+++.|.+||++|++||+|......+|..+|+++|++|++++||+||+||++++.++++...+|..+.++....
T Consensus 310 DV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~ 389 (454)
T COG1249 310 DVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMG 389 (454)
T ss_pred ccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhcc
Confidence 99999889999999999999999985556778999999999999999999999999999989999999999999999889
Q ss_pred CCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008839 461 PDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 461 ~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
+..||+|+++|+++++|||+|++|++|.|||+.+++||++++|.+|+.+++|+|||++|++.++
T Consensus 390 ~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a 453 (454)
T COG1249 390 ETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA 453 (454)
T ss_pred CCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998764
No 2
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.3e-84 Score=689.58 Aligned_cols=482 Identities=89% Similarity=1.381 Sum_probs=443.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+|||+|||||++|+.||..|++.|++|+|||+|+...+.+..+.+||+|.|+||+|+|.++..++..+.+++...||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34699999999999999999999999999999966555555556789999999999999999999999998988889998
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
.......+||..+..++++.+.++...+...+++.+|+++.+++.+++++++.++++.+.||+||||||++|..|++||.
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~P~IpG~ 236 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGI 236 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCCCCCCCh
Confidence 76545679999999999999999999999999999999999999999999999988899999999999999999999998
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008839 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+++.|+++||++++++.+
T Consensus 237 ~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 237 EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 88889999988887899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008839 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
+++..++++.+.+.+.+++...+|.|++++|++|+++++++++++++++++|+|.||+++||++|||||+|||++.+.++
T Consensus 317 ~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~l~ 396 (558)
T PLN02546 317 QAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLT 396 (558)
T ss_pred EEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcccH
Confidence 99987544445566666655568999999999999998777899999998999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEE
Q 008839 390 PVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLV 469 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~ 469 (551)
+.|.+||+++|+||+|......+|..+|+++|+.|++++||+||+||++++.++.++..+|.+..+.+....+.+|+||+
T Consensus 397 ~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv 476 (558)
T PLN02546 397 PVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLI 476 (558)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEE
Confidence 99999999999999987655567889999999999999999999999999878888888888776666666678999999
Q ss_pred EECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhhcCCCCCCCCCchhhhhhc
Q 008839 470 LCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSEGMTGPEVKAAA 549 (551)
Q Consensus 470 ~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (551)
+|+++++|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|++.++++..|+++++.+.|+-+++|+|+++
T Consensus 477 ~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (558)
T PLN02546 477 VCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKIRKDSPSEGKTKDEVKAAA 556 (558)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHhhhcccccccCCCccccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 008839 550 GV 551 (551)
Q Consensus 550 ~~ 551 (551)
||
T Consensus 557 ~~ 558 (558)
T PLN02546 557 GV 558 (558)
T ss_pred cC
Confidence 97
No 3
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-82 Score=594.26 Aligned_cols=452 Identities=55% Similarity=0.953 Sum_probs=429.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+||.+|||||.+|+++|+++++.|.+|.|+|. +..+||+|.|+||+|+|.||+.+.+...+++..+|||
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~---------~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~ 88 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCEL---------PFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGF 88 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEec---------CCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCC
Confidence 3479999999999999999999999999999992 4489999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cCE--EEEeCeEEEcCCCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DGK--LYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g~--~~~~d~lviAtG~~p~~p 224 (551)
.......+||..+.+.+..++.++...+++.+.+.+|+++.|+++++++.++++ ++. .+++++++||||++|.+|
T Consensus 89 ~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 89 PINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred ccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCC
Confidence 998889999999999999999999999999999999999999999999997777 443 478999999999999999
Q ss_pred CCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008839 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 225 ~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
+|||.++-+++|.++++++.|+|++|+|+|++++|+|..++.+|.+++++-|.+.+|+.||+.+++.+.+.|+..||++|
T Consensus 169 nIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh 248 (478)
T KOG0405|consen 169 NIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVH 248 (478)
T ss_pred CCCchhhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008839 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
.++.++++....++...+....|....+|.++||+|+.|++..|++++.|++++++|.|.||++.+||+|+||++||+++
T Consensus 249 ~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~g 328 (478)
T KOG0405|consen 249 KNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTG 328 (478)
T ss_pred ccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccC
Confidence 99999999987776455666677655699999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcC-CCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCcccccccCC
Q 008839 385 RINLTPVALMEGGALAKTLFQ-AEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATLSGLP 461 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~ 461 (551)
...++++|+..|+.+++.++| .+..+.+|.++|.++|++|+++.|||||+||.++| +++.+|+..|.++.+++....
T Consensus 329 k~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k 408 (478)
T KOG0405|consen 329 KINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRK 408 (478)
T ss_pred cEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCC
Confidence 999999999999999999998 56678999999999999999999999999999997 599999999999999988888
Q ss_pred CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhh
Q 008839 462 DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRK 530 (551)
Q Consensus 462 ~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~ 530 (551)
++.++||+++.++.+++|+|++|+++.|+++.|+.|+++|.|-.|+++.+.+|||.+|.|++|+...|+
T Consensus 409 ~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEElVTmr~~tr~ 477 (478)
T KOG0405|consen 409 EKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEELVTMRSVTRR 477 (478)
T ss_pred cceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHHheeccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999988775
No 4
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.6e-77 Score=633.64 Aligned_cols=460 Identities=57% Similarity=0.987 Sum_probs=414.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+||||||+|+.||.+|++.|++|+|||++...++....+.+||+|.|+||+|+|.++..+++...++....||+.
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~ 103 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE 103 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 36999999999999999999999999999999543333334457799999999999999999999998888888889987
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cCE--EEEeCeEEEcCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DGK--LYSARHILISVGGRPFIPD 225 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g~--~~~~d~lviAtG~~p~~p~ 225 (551)
......++|.+++.+..+.+.++...+...+.+.+|+++.+++.+++++++.+ +++ .+.||+||||||++|..|+
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~ 183 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPN 183 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCC
Confidence 65566899999999998889888888888889999999999999999998887 444 5889999999999999999
Q ss_pred CCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008839 226 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 226 i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
+||.+..+++++.+.++..+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++.||++++
T Consensus 184 ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~ 263 (499)
T PLN02507 184 IPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHP 263 (499)
T ss_pred CCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEe
Confidence 99987777888888888889999999999999999999999999999999999888889999999999999999999999
Q ss_pred CcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC
Q 008839 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR 385 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~ 385 (551)
++.|++++.++++ +.+.+.+|+++++|.|++++|++|++++++++.++++++++|+|.||+++||++|||||+|||++.
T Consensus 264 ~~~V~~i~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~ 342 (499)
T PLN02507 264 RTNLTQLTKTEGG-IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNR 342 (499)
T ss_pred CCEEEEEEEeCCe-EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCC
Confidence 9999999876555 677888888899999999999999999877889999999999999999999999999999999998
Q ss_pred CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhc-CCCeEEEEeeccCcccccccCCCcE
Q 008839 386 INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQE-YGDIDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
+.+++.|.+||+++++||+++...++++..+|+.+|+.|+++++|+||+||++. +.++.+...++.+..+++....+++
T Consensus 343 ~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 422 (499)
T PLN02507 343 INLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKT 422 (499)
T ss_pred CccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEEEEeecCccccccccCCCCE
Confidence 899999999999999999987665677888999999999999999999999987 4567777777777666665556789
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhh
Q 008839 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKI 531 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~ 531 (551)
|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++...++++
T Consensus 423 ~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~~~ 489 (499)
T PLN02507 423 VMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRSVTRRV 489 (499)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999998877666543
No 5
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.2e-77 Score=628.49 Aligned_cols=461 Identities=40% Similarity=0.702 Sum_probs=404.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANF-GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+|||+|||||++|+.||.++++. |.+|+|||+...+. ......+||+|.|+||+|+|.|+..++..+..++...||+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~-~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHG-PPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCcc-ccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCe
Confidence 369999999999999999999996 99999999310000 0012479999999999999999999999888888888888
Q ss_pred ccC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEecCCEEEEc---------CEEEEeCeEEEcCC
Q 008839 150 KYG-TEPQHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIVDPHTVDVD---------GKLYSARHILISVG 218 (551)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i~~~~v~v~---------g~~~~~d~lviAtG 218 (551)
... ....+||..+.++.++.+.++...+...+++ .+|+++.|++.+++++++.++ .+.+.||+||||||
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG 160 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG 160 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence 643 2457899999999999999998888888887 499999999999999999883 25799999999999
Q ss_pred CCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCccCCCCCHHHHHHHHHH
Q 008839 219 GRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295 (551)
Q Consensus 219 ~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~l~~~ 295 (551)
++|..|++||.+.++++++++.+...+++++|||+|++|+|+|..+..+ |.+|+++++.+++++.+|+++.+.+.+.
T Consensus 161 s~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~ 240 (486)
T TIGR01423 161 SWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQ 240 (486)
T ss_pred CCCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHH
Confidence 9999999999888889998888888899999999999999999887665 9999999999999999999999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008839 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
|+++||++++++.+++++.++++...+.+.+|+++++|.|++|+|++|+++.++++..+++++++|+|.||+++||++||
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~ 320 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPN 320 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCC
Confidence 99999999999999999876444356777788889999999999999999987788899999999999999999999999
Q ss_pred EEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccc
Q 008839 376 IWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKA 455 (551)
Q Consensus 376 vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~ 455 (551)
|||+|||++.+.+++.|.+||+++++||+|.+....++..+|+++|+.|++++||+||+||++.+.++.++...+.+...
T Consensus 321 IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~~~~~~~~~~~ 400 (486)
T TIGR01423 321 IYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMH 400 (486)
T ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEEEEEeeCchhh
Confidence 99999999999999999999999999999865445677789999999999999999999999886667777666665444
Q ss_pred ccccCC-CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhhc
Q 008839 456 TLSGLP-DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIR 532 (551)
Q Consensus 456 ~~~~~~-~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~ 532 (551)
.+.... ..+|+||++|+++++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.++.-..+++-
T Consensus 401 ~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~~~~ 478 (486)
T TIGR01423 401 NISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYQ 478 (486)
T ss_pred hhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhcccccccc
Confidence 433222 36899999999999999999999999999999999999999999999999999999999888764455443
No 6
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=2.8e-77 Score=626.35 Aligned_cols=443 Identities=43% Similarity=0.794 Sum_probs=405.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+||||||||++||..|++.|++|+||| +..+||+|.|+||+|+|.++..+......++...||+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 71 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVE----------AKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQ 71 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEec----------ccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCccc
Confidence 5999999999999999999999999999999 667999999999999999999999888888888888875
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCC-CCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIP-DIPGSE 230 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p-~i~g~~ 230 (551)
.....++|..+..+..+.++.+...+...+++.+|+++.+++.+.+++++.++++.+.||+||||||++|+.| ++||.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~ 151 (450)
T TIGR01421 72 NLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAE 151 (450)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCCCc
Confidence 4344689999999999999998888888889999999999999999999888888899999999999999999 899988
Q ss_pred ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 231 YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+|+++.+.+++.|+++||++++++.|+
T Consensus 152 ~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~ 231 (450)
T TIGR01421 152 LGTDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPV 231 (450)
T ss_pred eeEcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 77888899888888999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEEEcCCceEEEEECCC-eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008839 311 AILKSTDGSLSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G-~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
+++.++++.+.+.+.+| +.+++|.|++|+|++|++++++++..+++++++|+|.||+++||++|||||+|||++.+.++
T Consensus 232 ~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~~~ 311 (450)
T TIGR01421 232 KVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVELT 311 (450)
T ss_pred EEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcccH
Confidence 99875444356777778 57999999999999999998778899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCC-CCCCCCCCccEEEecCCceEEeeCCHHHHHhcC-C-CeEEEEeeccCcccccccCCCcEEE
Q 008839 390 PVALMEGGALAKTLFQAE-PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY-G-DIDVFTANFRPLKATLSGLPDRIFM 466 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (551)
+.|.+||+++|+||+++. ....++..+|+++|++|++++||+||+||++++ . .+.+...++.+..+++..+.+.+|+
T Consensus 312 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 391 (450)
T TIGR01421 312 PVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRM 391 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceEE
Confidence 999999999999999754 344578899999999999999999999998873 2 4777777888777777677888999
Q ss_pred EEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008839 467 KLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 467 kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
||++|++||+|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|++.++
T Consensus 392 klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 392 KLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999998765
No 7
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=7.2e-77 Score=626.08 Aligned_cols=445 Identities=51% Similarity=0.892 Sum_probs=407.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCC
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGF 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~ 147 (551)
|+.+|||+||||||||++||..|++.|++|+||| +..+||+|.|.||+|+|.+++.++..+.++. ...+
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE----------~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~ 70 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIE----------AKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGY 70 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEe----------ccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhc
Confidence 4457999999999999999999999999999999 6689999999999999999999988887776 5667
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008839 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
|+... .+.++|..+.++..+.++++...+...+.+.+|+++.+++.++++++++++++.+.||+||||||++|..|++|
T Consensus 71 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p~~p~i~ 149 (450)
T PRK06116 71 GFDVT-ENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIP 149 (450)
T ss_pred CCCCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCC
Confidence 77543 46789999999988888888888888888899999999999999999999888899999999999999999999
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008839 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
|.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|++.||++++++
T Consensus 150 g~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~ 229 (450)
T PRK06116 150 GAEYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNA 229 (450)
T ss_pred CcceeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCC
Confidence 99888889998888888999999999999999999999999999999999988888999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008839 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
+|++++.++++.+.+.+.+|+++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||++|||||+|||++.++
T Consensus 230 ~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~ 309 (450)
T PRK06116 230 VPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVE 309 (450)
T ss_pred EEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCcC
Confidence 99999876554366788888889999999999999999987778899999999999999999999999999999999889
Q ss_pred ChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCCC--eEEEEeeccCcccccccCCCcE
Q 008839 388 LTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
+++.|.+||+++|+||+|... ...+|..+|+.+|+.|++++||+||+||++.+.+ +.+...++.+..+++..+.+++
T Consensus 310 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 389 (450)
T PRK06116 310 LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPC 389 (450)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCce
Confidence 999999999999999998654 4567889999999999999999999999998765 7888878888777776777899
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008839 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
|+||++|+++++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|++.++
T Consensus 390 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 390 LMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999998764
No 8
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.1e-76 Score=622.56 Aligned_cols=441 Identities=56% Similarity=0.967 Sum_probs=406.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+||||||||++||+.+++.|++|+||| +..+||+|.|.||+|+|.++..++..+.+++...||+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 71 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAE----------EPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTV 71 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEe----------cCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCC
Confidence 5999999999999999999999999999999 567999999999999999999999999899888898875
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE--cCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--DGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v--~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
. ...++|..+..+..+.+.++...+...+++.+++++.+++.+++++++.+ +++.+.||+||||||++|..|++||.
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~ 150 (446)
T TIGR01424 72 G-KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGH 150 (446)
T ss_pred C-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCc
Confidence 4 45789999999999999999888888899999999999999999988877 66789999999999999999999998
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008839 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
+..+++++.+.+...+++++|||+|++|+|+|..++++|.+|+++++.+.+++.+++++.+.+.+.|++.||+++++++|
T Consensus 151 ~~~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v 230 (446)
T TIGR01424 151 ELGITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSL 230 (446)
T ss_pred cceechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 77778888888877899999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008839 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
++++.++++ +.+.+.+|+++++|.||+|+|+.|+++.++++..+++++++|+|.||+++||++|||||+|||++.++++
T Consensus 231 ~~i~~~~~~-~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~ 309 (446)
T TIGR01424 231 TSITKTDDG-LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRINLT 309 (446)
T ss_pred EEEEEcCCe-EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCccch
Confidence 999876555 6677778888999999999999999998778899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC-CCeEEEEeeccCcccccccCCCcEEEEE
Q 008839 390 PVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY-GDIDVFTANFRPLKATLSGLPDRIFMKL 468 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~kl 468 (551)
+.|.+||+++++||+|++....++..+|+++|+.|+++++|+||+||++.+ .++.+....+.+..+++..+.+.+|+||
T Consensus 310 ~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kl 389 (446)
T TIGR01424 310 PVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKL 389 (446)
T ss_pred hHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEE
Confidence 999999999999999865445677889999999999999999999999884 6788887777777667667778899999
Q ss_pred EEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008839 469 VLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 469 ~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.++
T Consensus 390 i~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 390 VVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred EEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999997764
No 9
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=2.2e-75 Score=616.65 Aligned_cols=451 Identities=31% Similarity=0.488 Sum_probs=407.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|+.+|||+||||||||++||.+|++.|++|+||| +..+||+|.|.||+|+|.++..++..........+|
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 71 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIE----------RGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYG 71 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999 678999999999999999999999988888888888
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
+.......++|..+..+......++...+...+++. +|+++.+++.+++++++.++++.+.||+||||||++|+.|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p~~p~i~ 151 (463)
T PRK06370 72 VSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIP 151 (463)
T ss_pred cccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCCCCCCCC
Confidence 875434578999999999888888777777888887 9999999999999999999888899999999999999999999
Q ss_pred CCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008839 228 GSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 228 g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
|.+. +++.++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++.||++++
T Consensus 152 G~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~ 231 (463)
T PRK06370 152 GLDEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRL 231 (463)
T ss_pred CCCcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEe
Confidence 9753 67888888777789999999999999999999999999999999999999989999999999999999999999
Q ss_pred CcccEEEEEcCCceEEEEE--C-CCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcC
Q 008839 306 EESPQAILKSTDGSLSVKT--N-KGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~--~-~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~ 382 (551)
+++|.+++.++++ ..+.+ . +++++++|.||+|+|++|+++.+.+++.+++++++|+|.||+++||++|||||+|||
T Consensus 232 ~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~ 310 (463)
T PRK06370 232 NAECIRVERDGDG-IAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDC 310 (463)
T ss_pred CCEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeec
Confidence 9999999876554 33433 2 345799999999999999998666788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008839 383 TDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
++.+.+++.|.+||+++|+||++......++..+|+.+|++|+++++|++|+||++.+.++.+...++....+++..+.+
T Consensus 311 ~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (463)
T PRK06370 311 NGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGET 390 (463)
T ss_pred CCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCC
Confidence 99999999999999999999998644556678899999999999999999999999888888888888888888777778
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhh
Q 008839 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRK 530 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~ 530 (551)
++|+||++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.+.....++
T Consensus 391 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~ 458 (463)
T PRK06370 391 QGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALRR 458 (463)
T ss_pred CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998776555443
No 10
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=4.3e-75 Score=616.45 Aligned_cols=441 Identities=37% Similarity=0.660 Sum_probs=391.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||+||++||..+++.|.+|+||| +..+||+|.|+||+|+|.++.+++..+..++...+|+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIE----------k~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~ 116 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVE----------KDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFD 116 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEe----------cccccccccccCCCCCchhhhhcccHHHHHHHHhcCCC
Confidence 46999999999999999999999999999999 66899999999999999999999988888888888876
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---------------------------
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--------------------------- 203 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v--------------------------- 203 (551)
.. ..+||..+.++..+.+..+...+...+++.+|+++.|++++.+++++.+
T Consensus 117 ~~--~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (561)
T PTZ00058 117 TQ--FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQ 194 (561)
T ss_pred cc--CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeecccee
Confidence 32 4689999999999999988888888889999999999999999888752
Q ss_pred --cCEEEEeCeEEEcCCCCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008839 204 --DGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 204 --~g~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
+++.+.||+||||||++|..|++||.+.++++++++.+.. +++++|||+|++|+|+|..|.++|.+|+++++.++++
T Consensus 195 ~~~g~~i~ad~lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 195 LDDGQVIEGKNILIAVGNKPIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred cCCCcEEECCEEEEecCCCCCCCCCCCceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4567999999999999999999999887888888888766 8999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC-CeEEEeeEEEEecCcCCCCCCCCccccCeeecCC
Q 008839 282 RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK-GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360 (551)
Q Consensus 282 ~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~ 360 (551)
+.+|+++.+.+.+.|++.||++++++.+.+++.++++.+.+.+.+ ++++++|.|++|+|++|+++.++++..++. +++
T Consensus 274 ~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~ 352 (561)
T PTZ00058 274 RKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPK 352 (561)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCC
Confidence 999999999999999999999999999999987544324555544 457999999999999999998877777665 457
Q ss_pred CCeEeCCCCCCCCCcEEEeCcCCC----------------------------------CCCChHHHHHhHHHHHHHHcCC
Q 008839 361 GAIEVDEYSGTAVPSIWAVGDVTD----------------------------------RINLTPVALMEGGALAKTLFQA 406 (551)
Q Consensus 361 G~i~vd~~~~t~~~~vya~GD~~~----------------------------------~~~~~~~A~~~g~~aa~~i~g~ 406 (551)
|+|.||+++||++|||||+|||++ .+++++.|.+||+++|+||+|.
T Consensus 353 G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 353 GYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred CeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999 5789999999999999999986
Q ss_pred CCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCccccccc----CCCcEEEEEEEECCCCeEEEE
Q 008839 407 EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATLSG----LPDRIFMKLVLCAKTNKVLGL 480 (551)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~kl~~~~~~~~ilG~ 480 (551)
.....++..+|+++|++|+++++|+||+||++++ .++.+....+....++... ....+|+|+++|+++|+|||+
T Consensus 433 ~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~ 512 (561)
T PTZ00058 433 FSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGL 512 (561)
T ss_pred CCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEE
Confidence 4444567889999999999999999999999873 2577776677665554322 346799999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 481 HMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 481 ~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
|++|++|.|+|+.+++||++++|++||.+++++|||++|++.++.
T Consensus 513 ~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~ 557 (561)
T PTZ00058 513 HIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMA 557 (561)
T ss_pred EEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhc
Confidence 999999999999999999999999999999999999999987653
No 11
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.3e-75 Score=555.04 Aligned_cols=446 Identities=30% Similarity=0.494 Sum_probs=412.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh--ccCCC
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE--SNGFG 148 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~--~~~~g 148 (551)
.+|||+|||+||+|..||+.+++.|++.+.||+ ++.+||+|+|.||+|||.|++-+++.+..++ +..+|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEk---------r~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rG 108 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEK---------RGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRG 108 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEec---------cCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcC
Confidence 369999999999999999999999999999994 7999999999999999999999888777664 77888
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFI 223 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~ 223 (551)
+... ...+|.+.++......++.+...+...+++.+|+++.|.+.+++++++.+ ++ ..+.++++||||||. .
T Consensus 109 i~vs-~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V 185 (506)
T KOG1335|consen 109 IDVS-SVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--V 185 (506)
T ss_pred cccc-ceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc--c
Confidence 8766 67899999999999999999999999999999999999999999999998 33 578999999999985 3
Q ss_pred CCCCCC----CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc
Q 008839 224 PDIPGS----EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 224 p~i~g~----~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 299 (551)
+++||+ +.+.+++..+.+.+.|++++|||+|++|+|++..+.++|.+||+++-.+.+.+.+|.++++..++.|+.+
T Consensus 186 ~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 186 TPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQ 265 (506)
T ss_pred CCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhc
Confidence 345564 3588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCcccEEEEEcCCceEEEEECC---C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008839 300 GIEFHTEESPQAILKSTDGSLSVKTNK---G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
|++|+++++|..++.++++.+.|++.+ + ++++||.+++++|++|.+..|++++.|++.|.+|.|.||..++|.+|
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP 345 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVP 345 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCC
Confidence 999999999999999888657776643 2 37999999999999999999999999999999999999999999999
Q ss_pred cEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcc
Q 008839 375 SIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLK 454 (551)
Q Consensus 375 ~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~ 454 (551)
+||++||++.+|++++.|..||-.+.+.|.|+.. ..+|..+|.+.|++||+++||.||+++++.+.++.+.+.+|..+.
T Consensus 346 ~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~-hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNs 424 (506)
T KOG1335|consen 346 HIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHG-HVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANS 424 (506)
T ss_pred ceEEecccCCcchhhhhhhhhchhheeeecccCc-ccccCCCCceeecccceeeeccchhhHHhcCcceEeeeccccccc
Confidence 9999999999999999999999999999998654 467888999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhh
Q 008839 455 ATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529 (551)
Q Consensus 455 ~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 529 (551)
++....+..||+|+++|++|++|||+||+|++|.|||++.++||+.|.+.+|+++.+|+|||+||++.+...+|.
T Consensus 425 Raktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~ 499 (506)
T KOG1335|consen 425 RAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAY 499 (506)
T ss_pred hhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhh
Confidence 998889999999999999999999999999999999999999999999999999999999999999887655543
No 12
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=1.7e-74 Score=604.85 Aligned_cols=438 Identities=29% Similarity=0.476 Sum_probs=393.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+||++||||||+|..||.++ .|.+|+||| ++.+||+|.|+||+|+|.|+..++..+..++...||+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie----------~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 68 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVE----------KGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDA 68 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEe----------CCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccC
Confidence 48999999999999988763 599999999 778999999999999999999999999888888888864
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHH-HHHH-HHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGI-YKNI-LINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDIPG 228 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g 228 (551)
. ...+||..+.++....++++... .... ++..+++++.+++.+++++++.+ +++.+.||++|||||++|+.|++||
T Consensus 69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g 147 (451)
T PRK07846 69 E-LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIA 147 (451)
T ss_pred C-CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCC
Confidence 3 45789999999998888887553 4444 77889999999999999999999 5678999999999999999999998
Q ss_pred CC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008839 229 SE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 229 ~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+ +.||+++++
T Consensus 148 ~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~ 226 (451)
T PRK07846 148 DSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLG 226 (451)
T ss_pred cCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeC
Confidence 64 357888888888889999999999999999999999999999999999999889999998887755 568999999
Q ss_pred cccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCC
Q 008839 307 ESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI 386 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~ 386 (551)
+++++++.++++ +.+.+.+|+++++|.|++|+|++|+++++++++.+++++++|+|.||+++||++|||||+|||++.+
T Consensus 227 ~~v~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~ 305 (451)
T PRK07846 227 RNVVGVSQDGSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY 305 (451)
T ss_pred CEEEEEEEcCCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCc
Confidence 999999876554 6678888889999999999999999998877889999999999999999999999999999999998
Q ss_pred CChHHHHHhHHHHHHHHcCCC-CCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEE
Q 008839 387 NLTPVALMEGGALAKTLFQAE-PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIF 465 (551)
Q Consensus 387 ~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
++++.|.+||+++++||++.. ....++..+|+.+|++|+++++|+||+||++.+.++.+...++....+++.....++|
T Consensus 306 ~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 385 (451)
T PRK07846 306 QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGF 385 (451)
T ss_pred cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceE
Confidence 999999999999999999763 2345677899999999999999999999999887888888888887777766777899
Q ss_pred EEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC-cccCCCchHHHHHH
Q 008839 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAEEFVTL 524 (551)
Q Consensus 466 ~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~~~~~ 524 (551)
+||++|++|++|||+|++|+++.|+|+.+++||++++|++||..+ +++|||++|.+.+.
T Consensus 386 ~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a 445 (451)
T PRK07846 386 VKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENA 445 (451)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 57999999987653
No 13
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=6.4e-74 Score=603.96 Aligned_cols=455 Identities=38% Similarity=0.676 Sum_probs=396.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||++|+.+|..+++.|.+|+|||++... .......+||+|.|+||+|+|.|+..++......+...||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~-~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPT-PLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC-CCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 589999999999999999999999999999931100 0011125999999999999999999999888877778888865
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p~i 226 (551)
.....+||..+.++..+.+..+...+...++..+|+++.|.+.+++++++.+ ++ ..+.||+||||||++|+.|++
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~i 160 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGI 160 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCC
Confidence 4335789999999999999998888888899999999999999999999887 22 479999999999999999999
Q ss_pred CCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008839 227 PGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 227 ~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
||. +..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++.+ +.+++.+|+++.+.+++.|+++||++++
T Consensus 161 pG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~ 239 (484)
T TIGR01438 161 PGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKR 239 (484)
T ss_pred CCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEe
Confidence 997 45678888888888889999999999999999999999999999998 5778889999999999999999999999
Q ss_pred CcccEEEEEcCCceEEEEECCC---eEEEeeEEEEecCcCCCCCCCCccccCeeecC-CCCeEeCCCCCCCCCcEEEeCc
Q 008839 306 EESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK-NGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~t~~~~vya~GD 381 (551)
++.+.++...++. +.+++.++ +++++|.|++|+|+.||++++++++.++++++ +|+|.||+++||++|+|||+||
T Consensus 240 ~~~v~~v~~~~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GD 318 (484)
T TIGR01438 240 QFVPIKVEQIEAK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGD 318 (484)
T ss_pred CceEEEEEEcCCe-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEE
Confidence 9999999876544 56666555 37999999999999999998888899999875 4899999999999999999999
Q ss_pred CCC-CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC-C-CeEEEEeeccCcccccc
Q 008839 382 VTD-RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY-G-DIDVFTANFRPLKATLS 458 (551)
Q Consensus 382 ~~~-~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~-~-~~~~~~~~~~~~~~~~~ 458 (551)
|+. .+.+++.|.+||+++++||++......++..+|+.+|++|++++||+||+||++++ . .+.+...++.+..+++.
T Consensus 319 v~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~ 398 (484)
T TIGR01438 319 ILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIP 398 (484)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhh
Confidence 996 57889999999999999999865545677889999999999999999999999873 3 57777777776666554
Q ss_pred cCC--CcEEEEEEEE-CCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhh
Q 008839 459 GLP--DRIFMKLVLC-AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529 (551)
Q Consensus 459 ~~~--~~~~~kl~~~-~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 529 (551)
... +.+|+||+++ +++++|||+|++|++|.|+|+.+++||++++|++||.+++++|||++|.+.++...+|
T Consensus 399 ~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~ 472 (484)
T TIGR01438 399 SRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVTKR 472 (484)
T ss_pred CCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhhhh
Confidence 433 6789999996 5699999999999999999999999999999999999999999999999888765543
No 14
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-73 Score=601.76 Aligned_cols=444 Identities=28% Similarity=0.441 Sum_probs=398.9
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|+.+|||+||||||||++||.+|++.|++|+|||+ ...+||+|.|+||+|+|.++..+...+..++...+|
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~---------~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g 71 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVER---------YSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHG 71 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEec---------CCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcC
Confidence 45679999999999999999999999999999992 347999999999999999999998888888888888
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFI 223 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~ 223 (551)
+... ...++|..+..+.+..++++...+...+++.+|+++.+++.+++++++.+ ++ .++.||+||||||++|+.
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 150 (471)
T PRK06467 72 IVFG-EPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQ 150 (471)
T ss_pred cccC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCC
Confidence 8654 45789999999999888888888888889999999999999999998877 34 479999999999999974
Q ss_pred -CCCCCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008839 224 -PDIPGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 -p~i~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|.+++. +.++++++.+.+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+++++.+.+.+.|+++ +
T Consensus 151 ~p~~~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v 229 (471)
T PRK06467 151 LPFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F 229 (471)
T ss_pred CCCCCCCCCcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-e
Confidence 445553 3578888998888889999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEcCcccEEEEEcCCceEEEEECC--C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008839 302 EFHTEESPQAILKSTDGSLSVKTNK--G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~--G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
++++++.|++++.++++ +.+.+.+ + +++++|.||+|+|++|+++++.++.++++++++|+|.||+++||++|+||
T Consensus 230 ~i~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~Vy 308 (471)
T PRK06467 230 NIMLETKVTAVEAKEDG-IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIF 308 (471)
T ss_pred EEEcCCEEEEEEEcCCE-EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEE
Confidence 99999999999876555 5565543 2 36999999999999999998778889999999999999999999999999
Q ss_pred EeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccc
Q 008839 378 AVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATL 457 (551)
Q Consensus 378 a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~ 457 (551)
|+|||++.+.+++.|.+||+++|+||+|.. ...++..+|+++|++|++++||+||+||++++.++.+...++....+++
T Consensus 309 AiGDv~~~~~la~~A~~eG~~aa~~i~g~~-~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~ 387 (471)
T PRK06467 309 AIGDIVGQPMLAHKGVHEGHVAAEVIAGKK-HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAI 387 (471)
T ss_pred EehhhcCCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhh
Confidence 999999988999999999999999999854 3467788999999999999999999999998888888888888777777
Q ss_pred ccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 458 SGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 458 ~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
..+.+++|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 388 ~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~ 455 (471)
T PRK06467 388 ASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 455 (471)
T ss_pred hCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence 67778999999999999999999999999999999999999999999999999999999999877533
No 15
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-73 Score=608.47 Aligned_cols=453 Identities=26% Similarity=0.416 Sum_probs=394.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhc---cCCC
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDES---NGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~---~~~g 148 (551)
+|||+|||+|++|+.||..+++.|++|+|||+ .+..+||+|.|+||+|+|.|+..++....+++. ..||
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~--------~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTG--------DDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC--------CCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCC
Confidence 79999999999999999999999999999991 123799999999999999999999988887765 4677
Q ss_pred ccc-----------------CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCC-------eEEEEeEEEEecCCEEEE-
Q 008839 149 WKY-----------------GTEPQHDWSTLIANKNAELQRLTGIYKNILINAG-------ITLIEGRGKIVDPHTVDV- 203 (551)
Q Consensus 149 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~i~~~~v~v- 203 (551)
+.. .....+||..+.++.+..++.+...+...+++.+ ++++.+.+.+++++++.+
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 751 1345789999999999999999888888888764 899999999999999888
Q ss_pred -cCEEEEeCeEEEcCCCCCCCCCCCCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 204 -DGKLYSARHILISVGGRPFIPDIPGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 204 -~g~~~~~d~lviAtG~~p~~p~i~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+++++.||+||||||++|..|++++.+ .++++++++.++..+++++|||+|++|+|+|..|.++|.+||++++.+++
T Consensus 268 ~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 268 KSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred cCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 678899999999999999998866643 48888998888888999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HhcCcEEEcCcccEEEEEcCCc-eEEEEECC-------C--------eEEEeeEEEEecCcCC
Q 008839 281 LRGFDEDIRDFVAEQM-SLRGIEFHTEESPQAILKSTDG-SLSVKTNK-------G--------TVDGFSHVMFATGRRP 343 (551)
Q Consensus 281 l~~~~~~~~~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~-------G--------~~i~~d~vi~a~G~~p 343 (551)
++.+++++.+.+.+.+ +++||++++++.|++++.++++ .+.+.+.+ + +++++|.|++|+|++|
T Consensus 348 l~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 348 LPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred cccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECccc
Confidence 9999999999998876 6799999999999999876543 24454321 1 2699999999999999
Q ss_pred CCCCCCccccCeeecCCCCeEeCCCCCCC------CCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC----------
Q 008839 344 NTKNLGLEKVGVKMTKNGAIEVDEYSGTA------VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE---------- 407 (551)
Q Consensus 344 ~~~~l~l~~~gl~~~~~G~i~vd~~~~t~------~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~---------- 407 (551)
|++.++++..++++++ |+|.||++|||+ +|||||+|||++.+++++.|.+||+++++||+|..
T Consensus 428 nt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~ 506 (659)
T PTZ00153 428 NTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVEN 506 (659)
T ss_pred CCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 9998888888988864 899999999997 69999999999999999999999999999999852
Q ss_pred --CCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeeccCcccccccCC----------------------
Q 008839 408 --PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLP---------------------- 461 (551)
Q Consensus 408 --~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~---------------------- 461 (551)
....+|..+|.++|++|++++||+||+||++.+. ++.+....|....+++....
T Consensus 507 ~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~ 586 (659)
T PTZ00153 507 WASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDN 586 (659)
T ss_pred ccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccC
Confidence 3345688999999999999999999999999863 46666666766665543322
Q ss_pred CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhhcC
Q 008839 462 DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRK 533 (551)
Q Consensus 462 ~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~~ 533 (551)
+.||+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+......++++
T Consensus 587 ~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~~~~~ 658 (659)
T PTZ00153 587 TEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIAGVRT 658 (659)
T ss_pred CceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHHhhhc
Confidence 689999999999999999999999999999999999999999999999999999999998887776666654
No 16
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=3.4e-73 Score=595.73 Aligned_cols=438 Identities=31% Similarity=0.512 Sum_probs=386.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||+|++|+.||.. ..|.+|+||| ++.+||+|.|+||+|+|.|+..++..+.+++...||+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie----------~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 69 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVE----------KGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDA 69 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEe----------CCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeC
Confidence 5999999999999998654 4699999999 778999999999999999999999999999988898863
Q ss_pred CCCCCCChHHHHHHHHH-HHHHHHHHHHHH-H--HhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNA-ELQRLTGIYKNI-L--INAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~--~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p~~p~i 226 (551)
....+||..++.+..+ ..+.+....... + ++.+|+++.+++.+.+++++.+ ++++++||+||||||++|..|++
T Consensus 70 -~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~ 148 (452)
T TIGR03452 70 -EIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPA 148 (452)
T ss_pred -CCCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCC
Confidence 2456899999998876 555554322222 2 3479999999999999999998 66789999999999999998875
Q ss_pred CCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008839 227 PGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 227 ~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
.+.. .++++++++.+.+.+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.++ .||+++
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~ 227 (452)
T TIGR03452 149 IADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIR 227 (452)
T ss_pred CCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEE
Confidence 4432 3678888888887899999999999999999999999999999999999888899999988877654 689999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008839 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
++++|++++.++++ +.+.+.+|+++++|.|++|+|++|++++++++.+|++++++|+|.||+++||++|+|||+|||++
T Consensus 228 ~~~~V~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 306 (452)
T TIGR03452 228 LGRNVTAVEQDGDG-VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSS 306 (452)
T ss_pred eCCEEEEEEEcCCe-EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccC
Confidence 99999999876555 66777888889999999999999999998888899999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCc
Q 008839 385 RINLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDR 463 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (551)
.+++++.|.+||+++|+||++... ...++..+|+++|++|+++++|+||+||++.+.++.+...++....+++..+.+.
T Consensus 307 ~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~ 386 (452)
T TIGR03452 307 PYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTT 386 (452)
T ss_pred cccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCC
Confidence 989999999999999999998643 3466778999999999999999999999998878888877888777776667788
Q ss_pred EEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC-cccCCCchHHHHHH
Q 008839 464 IFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAEEFVTL 524 (551)
Q Consensus 464 ~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~~~~~ 524 (551)
+|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||..+ +++|||++|++.++
T Consensus 387 g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a 448 (452)
T TIGR03452 387 GFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENA 448 (452)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 88999999997653
No 17
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=5.2e-72 Score=589.53 Aligned_cols=440 Identities=29% Similarity=0.435 Sum_probs=398.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.||+|||||++|+.+|..+++.|.+|+||| +..+||+|.|+||+|+|.++..++..+.++....+|+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e----------~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~ 71 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIE----------RDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFI 71 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEE----------ccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccc
Confidence 589999999999999999999999999999 6678999999999999999999988888888888888642
Q ss_pred --CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEE----ecCCEEEE---cCE--EEEeCeEEEcCCCCC
Q 008839 153 --TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKI----VDPHTVDV---DGK--LYSARHILISVGGRP 221 (551)
Q Consensus 153 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----i~~~~v~v---~g~--~~~~d~lviAtG~~p 221 (551)
....++|..+..+.++..+.+...+.+.+++.+|+++.+++.+ ++++++.+ +++ .+.||+||||||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 72 DDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASP 151 (466)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCC
Confidence 2457899999999998888888788888889999999999999 67787777 444 799999999999999
Q ss_pred CCCCCCC--CCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc
Q 008839 222 FIPDIPG--SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 222 ~~p~i~g--~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 299 (551)
..|++++ .+.++++++++++...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++
T Consensus 152 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~ 231 (466)
T PRK07845 152 RILPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARR 231 (466)
T ss_pred CCCCCCCCCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHC
Confidence 8776544 34578888888887788999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEe
Q 008839 300 GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAV 379 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~ 379 (551)
||++++++++.+++.++++ +.+.+.+|+++++|.|++++|++|++..+++++.+++++++|+|.||+++||++|||||+
T Consensus 232 gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~ 310 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAA 310 (466)
T ss_pred CcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEE
Confidence 9999999999999876555 667788888999999999999999999877889999999999999999999999999999
Q ss_pred CcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccccc
Q 008839 380 GDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSG 459 (551)
Q Consensus 380 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 459 (551)
|||++.+++++.|..||+++++|+++....+.++..+|+++|++|+++++|+||++|++.+.++.+...++....+++..
T Consensus 311 GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~ 390 (466)
T PRK07845 311 GDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMS 390 (466)
T ss_pred eeccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhc
Confidence 99999999999999999999999998654455678899999999999999999999999877888887777777777767
Q ss_pred CCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHH
Q 008839 460 LPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVT 523 (551)
Q Consensus 460 ~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 523 (551)
+.+++|+||++|++||+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+
T Consensus 391 ~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 454 (466)
T PRK07845 391 GLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITE 454 (466)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999998665
No 18
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.5e-72 Score=590.03 Aligned_cols=438 Identities=28% Similarity=0.463 Sum_probs=387.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh--ccCCCc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE--SNGFGW 149 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~--~~~~g~ 149 (551)
+|||+||||||||++||.++++.|++|+|||+ .+.+||+|.|+||+|+|.++..+...+.... ...+|+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~---------~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi 73 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEG---------RSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGI 73 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEec---------CCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCc
Confidence 59999999999999999999999999999992 3679999999999999999998887665553 456676
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
.. ...++|..++.+....+..+......++++.+|+++.+++.+.+++++.+ ++ .++.||+||||||++|.
T Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~-- 149 (466)
T PRK06115 74 EV--KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT-- 149 (466)
T ss_pred cc--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--
Confidence 53 35789999999999888888777778888889999999999888888776 44 36999999999999985
Q ss_pred CCCCCC----ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008839 225 DIPGSE----YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 225 ~i~g~~----~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
++||.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus 150 ~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~g 229 (466)
T PRK06115 150 PLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQG 229 (466)
T ss_pred CCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 345532 3678888888777899999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEEC---C--CeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008839 301 IEFHTEESPQAILKSTDGSLSVKTN---K--GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~---~--G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
|+++++++|++++.++++ +.+.+. + ++++++|.|++|+|++||++.++++..+++++++| +.||+++||++|+
T Consensus 230 V~i~~~~~V~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~ 307 (466)
T PRK06115 230 MKFKLGSKVTGATAGADG-VSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPG 307 (466)
T ss_pred CEEEECcEEEEEEEcCCe-EEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCC
Confidence 999999999999876554 444432 2 35799999999999999999877888899988776 7899999999999
Q ss_pred EEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccc
Q 008839 376 IWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKA 455 (551)
Q Consensus 376 vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~ 455 (551)
|||+|||++.+++++.|.+||+++|+||++.. ...+|..+|.++|++|++++||+||+||++.+.++.+...+|..+.+
T Consensus 308 IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~ 386 (466)
T PRK06115 308 VWVIGDVTSGPMLAHKAEDEAVACIERIAGKA-GEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSR 386 (466)
T ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEEEEecccChh
Confidence 99999999999999999999999999999854 34677889999999999999999999999988788888888888888
Q ss_pred ccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 456 TLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 456 ~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+...+...+|+||++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 387 ~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~ 456 (466)
T PRK06115 387 AKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAA 456 (466)
T ss_pred hHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHH
Confidence 8777778899999999999999999999999999999999999999999999999999999999876543
No 19
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=6.7e-72 Score=590.13 Aligned_cols=440 Identities=30% Similarity=0.446 Sum_probs=388.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCCCc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~g~ 149 (551)
.+|||+||||||||++||.+|++.|++|+||| ++.+||+|.+.||+|+|.++..++..+.... ...+|+
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie----------~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi 72 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVE----------KKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGI 72 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCC
Confidence 46999999999999999999999999999999 6789999999999999999888776665553 456666
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
. ....++|..+..+.+...+++.......++..+|+.+.+++.+++++++.+ ++ .++.||+||||||++|+.|
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~ 150 (466)
T PRK07818 73 S--GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL 150 (466)
T ss_pred C--cCcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC
Confidence 4 345789999999988888777776666777789999999999999998877 33 4799999999999999765
Q ss_pred CCCCC---CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008839 225 DIPGS---EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 225 ~i~g~---~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
||. ..+++.++.+.....+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++||
T Consensus 151 --pg~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV 228 (466)
T PRK07818 151 --PGTSLSENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGV 228 (466)
T ss_pred --CCCCCCCcEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCC
Confidence 443 346777776656667899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEEC--CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008839 302 EFHTEESPQAILKSTDGSLSVKTN--KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~--~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
+++++++|++++.+++. +.+.+. +| +++++|.|++|+|++|+++.+++++.+++++++|+|.||+++||++|+||
T Consensus 229 ~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~Iy 307 (466)
T PRK07818 229 KILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIY 307 (466)
T ss_pred EEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEE
Confidence 99999999999876544 445543 56 36999999999999999998778899999988899999999999999999
Q ss_pred EeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCC-CCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccc
Q 008839 378 AVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKAT 456 (551)
Q Consensus 378 a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~-~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~ 456 (551)
|+|||++.+++++.|..||++||.||+|.+..+. ++..+|.++|++|+++++|+||+||++.+.++.+...+|..+.++
T Consensus 308 AiGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~ 387 (466)
T PRK07818 308 AIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKA 387 (466)
T ss_pred EEeecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchh
Confidence 9999999899999999999999999998654333 788899999999999999999999999887888888888888888
Q ss_pred cccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 457 LSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 457 ~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
...+.+.+|+||++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 388 ~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 456 (466)
T PRK07818 388 HGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAF 456 (466)
T ss_pred hhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHH
Confidence 777788999999999999999999999999999999999999999999999999999999999977543
No 20
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=9.2e-72 Score=589.79 Aligned_cols=442 Identities=29% Similarity=0.433 Sum_probs=394.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+||||||+|+++|..|++.|++|+|||+ ...+||+|.+.||+|+|.+...............| ...
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~---------~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~-~~~ 74 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIER---------YRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLY-SSY 74 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEec---------cccccccccccCCCCHHHHHHHHHHHHHHhhhhhh-ccc
Confidence 69999999999999999999999999999992 35799999999999999988776655444443333 111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p~i 226 (551)
.....++|..+..+.+..++++...+...+.+.+++++.+++.+++.+++.+ ++ ..+.||+||||||++|..|++
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 75 RVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 2235678999999988888888877888888999999999999999988777 34 378999999999999999987
Q ss_pred CCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008839 227 PGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 227 ~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
++.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.++++||+++
T Consensus 155 ~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~ 234 (461)
T PRK05249 155 VDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIR 234 (461)
T ss_pred CCCCCCeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 7653 47888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008839 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
+++.|++++.++++ +.+++.+|+++++|.|++|+|++|+++++.+++.+++++++|+|.||+++||+.|||||+|||++
T Consensus 235 ~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~ 313 (461)
T PRK05249 235 HNEEVEKVEGGDDG-VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIG 313 (461)
T ss_pred ECCEEEEEEEeCCe-EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCC
Confidence 99999999876555 66777888889999999999999999987788899999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcE
Q 008839 385 RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
.+++++.|..||+++|.||+|.. ...++..+|+++|+.|+++++|+||+||++.+.++.+...+|....++...+.+.|
T Consensus 314 ~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 392 (461)
T PRK05249 314 FPSLASASMDQGRIAAQHAVGEA-TAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVG 392 (461)
T ss_pred CcccHhHHHHHHHHHHHHHcCCC-cccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCc
Confidence 88899999999999999999753 34567889999999999999999999999988788888888888888777777889
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
|+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 393 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 453 (461)
T PRK05249 393 MLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAA 453 (461)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877644
No 21
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.2e-71 Score=588.51 Aligned_cols=441 Identities=35% Similarity=0.532 Sum_probs=392.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
|||+||||||||++||.+|++.|++|+||| +..+||+|.|+||+|+|.++..++..+...+. .||+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie----------~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~-~~g~~~- 68 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE----------RGPLGGTCVNVGCVPSKMLLRAAEVAHYARKP-PFGGLA- 68 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEe----------CCcccCCeeeecEEccHHHHHHHHHHHHhhcc-Cccccc-
Confidence 799999999999999999999999999999 66799999999999999999998887776654 466543
Q ss_pred CCCCCChHHHHHHHHHHHHHHHH-HHHHHHHhCCeEEEEeEEEEecCCEEEEcC--EEEEeCeEEEcCCCCCCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTG-IYKNILINAGITLIEGRGKIVDPHTVDVDG--KLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g--~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
....++|..++.+.++...++.. .+...+++.+|+++.+++.+.+++++.+++ ..+.||+||||||++|..|++||.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~ 148 (463)
T TIGR02053 69 ATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGL 148 (463)
T ss_pred CCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCc
Confidence 24578999999999888887754 366778888999999999999999998843 468999999999999999999997
Q ss_pred Cc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008839 230 EY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 230 ~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
+. ++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.+++.||++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~ 228 (463)
T TIGR02053 149 KEAGYLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSA 228 (463)
T ss_pred ccCceECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCc
Confidence 53 6788888887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEEC---CCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008839 308 SPQAILKSTDGSLSVKTN---KGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~---~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
+|++++.+++. ..+.+. +++++++|.|++|+|++|+++.++++..+++++++|+|.||+++||+.|||||+|||++
T Consensus 229 ~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~ 307 (463)
T TIGR02053 229 QVKAVSVRGGG-KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTG 307 (463)
T ss_pred EEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCC
Confidence 99999876544 444442 23579999999999999999966778899999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcE
Q 008839 385 RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
.+.+++.|.+||+++|.||++......++..+|.++|++|+++++|+||++|++.+.++.+...++..+.+++..+.+.+
T Consensus 308 ~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 387 (463)
T TIGR02053 308 GLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRG 387 (463)
T ss_pred CcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcE
Confidence 98999999999999999999863344667789999999999999999999999988788888888887777766677889
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008839 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++..
T Consensus 388 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~ 449 (463)
T TIGR02053 388 FIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQ 449 (463)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765443
No 22
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.6e-71 Score=587.89 Aligned_cols=442 Identities=28% Similarity=0.405 Sum_probs=389.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||++|+++|..|++.|.+|+|||+ ...+||+|.|+||+|+|.++..+...+.....+.+|+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~---------~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~ 85 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEG---------ADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVE 85 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEc---------cCcceeEeccccccccHHHHHHHHHHHHHhhccccCcc
Confidence 359999999999999999999999999999992 34899999999999999999999888877777767775
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHH-HHHHHHHhC-CeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTG-IYKNILINA-GITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFI 223 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~ 223 (551)
.. .+.++|..+..+....+.++.. .+...++.. +++++.|++.+++++++.+ ++ .++.||+||||||++|..
T Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 164 (479)
T PRK14727 86 AV-APSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTI 164 (479)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCC
Confidence 42 4678999998888887777654 355666654 8999999999999988877 34 369999999999999999
Q ss_pred CCCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008839 224 PDIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 p~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|++||.+. .++.++.+.....+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+++++.+.+.+.|++.||
T Consensus 165 p~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 165 PPIPGLMDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEGI 243 (479)
T ss_pred CCCCCcCccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCC
Confidence 99999743 4666666666667899999999999999999999999999999885 57777999999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCc
Q 008839 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD 381 (551)
+++++++|++++.++++ +.+.+.++ ++++|.|++|+|+.||+.++.++.++++++++|+|.||+++||++|||||+||
T Consensus 244 ~i~~~~~V~~i~~~~~~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD 321 (479)
T PRK14727 244 EVLNNTQASLVEHDDNG-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGD 321 (479)
T ss_pred EEEcCcEEEEEEEeCCE-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeee
Confidence 99999999999876554 56666666 49999999999999999987788889999999999999999999999999999
Q ss_pred CCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCC
Q 008839 382 VTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLP 461 (551)
Q Consensus 382 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
|++.+.+++.|..||+++|.||+|.+. ..++..+|+++|++|+++++|+||+||++.+.++.+...++....+++....
T Consensus 322 ~~~~~~~~~~A~~~G~~aa~~i~g~~~-~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 400 (479)
T PRK14727 322 CSDLPQFVYVAAAAGSRAGINMTGGNA-TLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFE 400 (479)
T ss_pred cCCcchhhhHHHHHHHHHHHHHcCCCc-ccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCC
Confidence 999888999999999999999998643 4567788999999999999999999999998788878777877777766667
Q ss_pred CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008839 462 DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 462 ~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
+++|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++..
T Consensus 401 ~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~ 465 (479)
T PRK14727 401 TDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQ 465 (479)
T ss_pred CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999876554
No 23
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.4e-71 Score=585.79 Aligned_cols=440 Identities=31% Similarity=0.479 Sum_probs=386.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhcc-CCCc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESN-GFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~-~~g~ 149 (551)
.+|||+|||||+||++||..|++.|++|+||| ++.+||+|.|.||+|+|.++..++..+..+... .+|+
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie----------~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~ 74 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIE----------RGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGL 74 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEE----------ccccccceecCCccccHHHHHHHHHHHHHhhccccCCc
Confidence 47999999999999999999999999999999 667999999999999999999888777666554 3455
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHh-CCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGI-YKNILIN-AGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPF 222 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~ 222 (551)
... .+.++|..++.+.++.+.++... +...+.+ .+++++.+++.++++..+.+ ++ .+++||+||||||++|+
T Consensus 75 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 75 SAQ-APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA 153 (468)
T ss_pred ccC-CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC
Confidence 422 45789999999998887776543 4455554 48999999999999887766 33 47999999999999999
Q ss_pred CCCCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008839 223 IPDIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 223 ~p~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
.|++||.+. ++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+.+.|++.|
T Consensus 154 ~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~G 232 (468)
T PRK14694 154 EPPVPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREG 232 (468)
T ss_pred CCCCCCCCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999753 567777777777789999999999999999999999999999987 56778889999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeC
Q 008839 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~G 380 (551)
|++++++.+++++.+++. +.+.+.++ ++++|.|++|+|++|+++++.++..+++. ++|+|.||+++||++|||||+|
T Consensus 233 I~v~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~G 309 (468)
T PRK14694 233 IEVLKQTQASEVDYNGRE-FILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAG 309 (468)
T ss_pred CEEEeCCEEEEEEEcCCE-EEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEe
Confidence 999999999999876543 55666555 59999999999999999987677788886 4789999999999999999999
Q ss_pred cCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccC
Q 008839 381 DVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGL 460 (551)
Q Consensus 381 D~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 460 (551)
||++.+.+.+.|..||++||.||+|.+ ...++..+|.++|++|++++||+||+||++.+.++.+...++....+++...
T Consensus 310 D~~~~~~~~~~A~~~G~~aa~~i~~~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~ 388 (468)
T PRK14694 310 DCTDQPQFVYVAAAGGSRAAINMTGGD-ASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNF 388 (468)
T ss_pred ecCCCcccHHHHHHHHHHHHHHhcCCC-cccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcC
Confidence 999999999999999999999999764 3467788999999999999999999999999878888888888888877777
Q ss_pred CCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008839 461 PDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 461 ~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
.+.+|+||++|++||+|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.+...
T Consensus 389 ~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 454 (468)
T PRK14694 389 DTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQ 454 (468)
T ss_pred CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999876444
No 24
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-71 Score=585.51 Aligned_cols=439 Identities=35% Similarity=0.553 Sum_probs=395.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+||||||||++||..|++.|++|+||| +..+||+|.+.||+|+|.++..++..+.......||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~ 72 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE----------KEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIK 72 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEe----------ccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcc
Confidence 36999999999999999999999999999999 55599999999999999999999988888888888886
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEc----CEEEEeCeEEEcCCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVD----GKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~----g~~~~~d~lviAtG~~p~~p~i 226 (551)
.. ...++|..+.++.+...+.+...+...+++.+|+++.+++.+++++++.+. ++.+.||+||||||++|..|+
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p- 150 (462)
T PRK06416 73 AE-NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELP- 150 (462)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCC-
Confidence 53 456899999999988888887777788888999999999999999888873 368999999999999997653
Q ss_pred CCCC----ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE
Q 008839 227 PGSE----YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302 (551)
Q Consensus 227 ~g~~----~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 302 (551)
|.+ .++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++.||+
T Consensus 151 -g~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~ 229 (462)
T PRK06416 151 -GIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIK 229 (462)
T ss_pred -CCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCE
Confidence 432 367888888887788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccEEEEEcCCceEEEEECCC---eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEe
Q 008839 303 FHTEESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAV 379 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~ 379 (551)
++++++|++++.++++ +.+.+.+| +++++|.||+|+|++|++.+++++..+++++ +|+|.||+++||++|+|||+
T Consensus 230 i~~~~~V~~i~~~~~~-v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAi 307 (462)
T PRK06416 230 IKTGAKAKKVEQTDDG-VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAI 307 (462)
T ss_pred EEeCCEEEEEEEeCCE-EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEe
Confidence 9999999999876654 66766665 6799999999999999999877788999988 89999999999999999999
Q ss_pred CcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccccc
Q 008839 380 GDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSG 459 (551)
Q Consensus 380 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 459 (551)
|||++.+++++.|..||+++|.||++... ..++..+|..+|++|+++++|++|+||++++.++.+...++....++...
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~ni~~~~~-~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~ 386 (462)
T PRK06416 308 GDIVGGPMLAHKASAEGIIAAEAIAGNPH-PIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALAL 386 (462)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhc
Confidence 99999888999999999999999998543 44577899999999999999999999999988888888888877777767
Q ss_pred CCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 460 LPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 460 ~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+.+++|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 387 ~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 452 (462)
T PRK06416 387 GETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAA 452 (462)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999999999977543
No 25
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.1e-71 Score=582.40 Aligned_cols=439 Identities=29% Similarity=0.468 Sum_probs=393.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC-
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG- 152 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~- 152 (551)
+|+|||||+||++||.+|++.|++|+||| ++.+||+|.|.||+|+|.++..++..+..+....||+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie----------~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 71 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLID----------EADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPN 71 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEE----------CCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccC
Confidence 79999999999999999999999999999 6779999999999999999999998888888888888643
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC-EEEEeCeEEEcCCCCCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG-KLYSARHILISVGGRPFIPDIPG 228 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g-~~~~~d~lviAtG~~p~~p~i~g 228 (551)
....++|..+..+..+.++++.......+++.+++++.+++.+++++++.+ ++ +++.||+||||||++|+.|++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~ 151 (458)
T PRK06912 72 GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAP 151 (458)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCC
Confidence 345789999999999889888877888888899999999999999998887 33 47999999999999998888877
Q ss_pred CC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008839 229 SE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 229 ~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.+ .++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|++.||+++++
T Consensus 152 ~~~~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~ 231 (458)
T PRK06912 152 FDGKWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTG 231 (458)
T ss_pred CCCCeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEEC
Confidence 53 4778888888888899999999999999999999999999999999999999899999999999999999999999
Q ss_pred cccEEEEEcCCceEEEEECCC-eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC
Q 008839 307 ESPQAILKSTDGSLSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR 385 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~G-~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~ 385 (551)
++|++++.+++. +.+...++ +++++|.|++|+|++|+++.++++..+++++++| |.||+++||+.|||||+|||++.
T Consensus 232 ~~V~~i~~~~~~-v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~ 309 (458)
T PRK06912 232 AALKGLNSYKKQ-ALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGG 309 (458)
T ss_pred CEEEEEEEcCCE-EEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCC
Confidence 999999865543 44443322 3699999999999999998877788899888766 99999999999999999999998
Q ss_pred CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEE
Q 008839 386 INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIF 465 (551)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
+++++.|.+||+++|.|++|.+. ..++..+|.++|++|+++++|+||+||++++.++.+...+|....+++..+.+.+|
T Consensus 310 ~~la~~A~~~g~~aa~~~~g~~~-~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 388 (458)
T PRK06912 310 IQLAHVAFHEGTTAALHASGEDV-KVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGK 388 (458)
T ss_pred cccHHHHHHHHHHHHHHHcCCCC-CCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceE
Confidence 99999999999999999998543 45577899999999999999999999999887888887778877777777778999
Q ss_pred EEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 466 ~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+..
T Consensus 389 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (458)
T PRK06912 389 VKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEAL 448 (458)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987643
No 26
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.3e-71 Score=582.35 Aligned_cols=445 Identities=30% Similarity=0.497 Sum_probs=392.9
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|...|||+||||||||++||.+|++.|++|+||| +..+||+|.+.||+|+|.++..++..........+|
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 70 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVE----------KGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFG 70 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEE----------ccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999 667999999999999999999998888877777787
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC-------EEEE---cC--EEEEeCeEEEc
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH-------TVDV---DG--KLYSARHILIS 216 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~-------~v~v---~g--~~~~~d~lviA 216 (551)
+... .+.++|..+.+++++.++++.......+++.+|+++.+++.+++++ ++.+ ++ ..+.||+||||
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViA 149 (472)
T PRK05976 71 ISVS-GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIA 149 (472)
T ss_pred ccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEe
Confidence 7643 4578999999999988888887788888899999999999999988 7776 34 57999999999
Q ss_pred CCCCCCCCCCCCC--CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHH
Q 008839 217 VGGRPFIPDIPGS--EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAE 294 (551)
Q Consensus 217 tG~~p~~p~i~g~--~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~ 294 (551)
||++|..++.... ..++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+
T Consensus 150 TGs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~ 229 (472)
T PRK05976 150 TGSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVAR 229 (472)
T ss_pred CCCCCCCCCCCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHH
Confidence 9999975432222 24778888888877899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEcCcccEEEEEc-CCceEEEEECCCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCC
Q 008839 295 QMSLRGIEFHTEESPQAILKS-TDGSLSVKTNKGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGT 371 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t 371 (551)
.|++.||+++++++|++++.+ +++...+.+.+|+ ++++|.|++|+|++|+++.++++..++..+ +|+|.||++++|
T Consensus 230 ~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~t 308 (472)
T PRK05976 230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQT 308 (472)
T ss_pred HHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCccc
Confidence 999999999999999999752 3342334455663 699999999999999998766677777654 689999999999
Q ss_pred CCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeecc
Q 008839 372 AVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFR 451 (551)
Q Consensus 372 ~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~ 451 (551)
+.|+|||+|||++.+++++.|..||+++++||+|.+....++..+|.++|++|+++.+|++|+||++.+.++.+...++.
T Consensus 309 s~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~ 388 (472)
T PRK05976 309 KERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFA 388 (472)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECC
Confidence 99999999999998889999999999999999987645566778999999999999999999999999878888888888
Q ss_pred CcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 452 PLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 452 ~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
...++.....+++|+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 389 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 462 (472)
T PRK05976 389 ANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAA 462 (472)
T ss_pred cchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHH
Confidence 77887767778999999999999999999999999999999999999999999999999999999999877644
No 27
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.3e-71 Score=584.52 Aligned_cols=442 Identities=33% Similarity=0.491 Sum_probs=393.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||||||||++|++||.+|++.|++|+||| ++.+||+|.++||+|+|.++..++..+...+...||+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~ 71 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE----------KGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIH 71 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEe----------CCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35999999999999999999999999999999 57799999999999999999999888888888888876
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHH-HHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIY-KNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
.. ...++|..+..+..+....+...+ ...+...+++++.+.+.+++++++.++++++.||+||||||++ .|++||.
T Consensus 72 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~--~p~ipg~ 148 (460)
T PRK06292 72 AD-GPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR--VPPIPGV 148 (460)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC--CCCCCCC
Confidence 43 257899999999888888776665 5567778999999999999999998888899999999999999 4555554
Q ss_pred -----CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008839 230 -----EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 230 -----~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
..++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+++.|+++ |+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~ 227 (460)
T PRK06292 149 WLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIK 227 (460)
T ss_pred cccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEE
Confidence 2467788888888889999999999999999999999999999999999999989999999999999999 9999
Q ss_pred cCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcC
Q 008839 305 TEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~ 382 (551)
+++++++++.+++..+.+++.++ +++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||++|||||+|||
T Consensus 228 ~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~ 307 (460)
T PRK06292 228 LGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDV 307 (460)
T ss_pred cCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEec
Confidence 99999999876542244444333 4699999999999999999877888999999999999999999999999999999
Q ss_pred CCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008839 383 TDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
++.+++++.|..||+++|.||++......++..+|+.+|++|+++++|+||++|++.+.++.+...++..+.+++..+.+
T Consensus 308 ~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 387 (460)
T PRK06292 308 NGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKN 387 (460)
T ss_pred CCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCC
Confidence 99888999999999999999998533445677899999999999999999999999887888888888888887767778
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008839 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
.+|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++..
T Consensus 388 ~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 451 (460)
T PRK06292 388 DGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALR 451 (460)
T ss_pred CeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887543
No 28
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.9e-71 Score=587.92 Aligned_cols=460 Identities=38% Similarity=0.643 Sum_probs=391.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCC
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGF 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~ 147 (551)
|+.+|||+||||||||++||.+|++.|++|+|||+...+ .......+||+|.|+||+|+|.++..++.....++ ...|
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~-~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~ 80 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPS-TQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMY 80 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCC-CccccccccceeccccccchHHHHHHHHHHHHHHhHHhcC
Confidence 344699999999999999999999999999999931000 00111248999999999999999999888776653 4567
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-c---CEEEEeCeEEEcCCCCCCC
Q 008839 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-D---GKLYSARHILISVGGRPFI 223 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~---g~~~~~d~lviAtG~~p~~ 223 (551)
|+... . .++|.++.++....++++...+...++..+|+++.+++.+.+++++.+ + +..+.||+||||||++|..
T Consensus 81 g~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 81 GWKTS-S-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCC-C-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 77543 2 789999999999998888777777777789999999999999999887 2 3579999999999999998
Q ss_pred CC-CCCCC-ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008839 224 PD-IPGSE-YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 p~-i~g~~-~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|+ +||.+ ..+++++++.+...+++++|||+|++|+|+|..|+++|.+||++.+. .+++.+++++.+.+++.|+++||
T Consensus 159 p~~i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV 237 (499)
T PTZ00052 159 PEDVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGT 237 (499)
T ss_pred CCCCCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCC
Confidence 85 99975 46788888888878899999999999999999999999999999874 66778999999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCc
Q 008839 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD 381 (551)
++++++.+.+++..++. +.+.+.+|+++++|.|++|+|++||+++++++..+++++++|++.+++. +|++|+|||+||
T Consensus 238 ~i~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGD 315 (499)
T PTZ00052 238 LFLEGVVPINIEKMDDK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGD 315 (499)
T ss_pred EEEcCCeEEEEEEcCCe-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEE
Confidence 99999999999875544 6677888888999999999999999998777889999999998877777 999999999999
Q ss_pred CCC-CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCcccccc
Q 008839 382 VTD-RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATLS 458 (551)
Q Consensus 382 ~~~-~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~~ 458 (551)
|+. .+.+++.|.+||+++|+||++....+.++..+|+++|++|++++||+||+||++++ .++.+...+|.....+..
T Consensus 316 v~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~ 395 (499)
T PTZ00052 316 VVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAV 395 (499)
T ss_pred ecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhcc
Confidence 995 57899999999999999999866556778889999999999999999999999874 357777666654332211
Q ss_pred c---------------CCCcEEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHH
Q 008839 459 G---------------LPDRIFMKLVLCA-KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFV 522 (551)
Q Consensus 459 ~---------------~~~~~~~kl~~~~-~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~ 522 (551)
. ..+.||+||++|+ ++++|||+|++|++|+|+|+.+++||++++|++||.+++++|||++|++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~ 475 (499)
T PTZ00052 396 HREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFM 475 (499)
T ss_pred ccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhE
Confidence 1 1267999999997 48999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhhhhcCC
Q 008839 523 TLRTPTRKIRKS 534 (551)
Q Consensus 523 ~~~~~~~~~~~~ 534 (551)
++....|...-+
T Consensus 476 ~~~~~~~~~~~~ 487 (499)
T PTZ00052 476 NLSVTRRSGESF 487 (499)
T ss_pred EEEeeccCCCCh
Confidence 877777754433
No 29
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.4e-70 Score=575.09 Aligned_cols=426 Identities=28% Similarity=0.464 Sum_probs=373.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||+||++||.+|++.|++|+|||+ ....+||+|.+.||+|++.++....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~--------~~~~~GG~~~~~gcip~k~l~~~~~--------------- 59 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ--------SNAMYGGTCINIGCIPTKTLVHDAQ--------------- 59 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcC--------CCCccceeEeeccccchHHHHHHhc---------------
Confidence 59999999999999999999999999999992 0125799999999999998875542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHH-HHHhCCeEEEEeEEEEecCCEEEE---cCE-EEEeCeEEEcCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKN-ILINAGITLIEGRGKIVDPHTVDV---DGK-LYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~i~~~~v~v---~g~-~~~~d~lviAtG~~p~~p~i 226 (551)
...+|.....+.......+...... +.+..+++++.+++.+++++.+.+ ++. ++.||+||||||++|..|++
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i 136 (441)
T PRK08010 60 ---QHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPI 136 (441)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCC
Confidence 1346777777666665555433323 334459999999999999888776 454 69999999999999999999
Q ss_pred CCCC---ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008839 227 PGSE---YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 227 ~g~~---~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
||.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|++.||++
T Consensus 137 ~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v 216 (441)
T PRK08010 137 PGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDI 216 (441)
T ss_pred CCccCCCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEE
Confidence 9964 3778888888777889999999999999999999999999999999999999899999999999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCC
Q 008839 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~ 383 (551)
+++++|++++.+++. +.+.+.+++ +++|.|++|+|++|+++++.++.++++++++|+|.||+++||++|||||+|||+
T Consensus 217 ~~~~~v~~i~~~~~~-v~v~~~~g~-i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~ 294 (441)
T PRK08010 217 ILNAHVERISHHENQ-VQVHSEHAQ-LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVT 294 (441)
T ss_pred EeCCEEEEEEEcCCE-EEEEEcCCe-EEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC
Confidence 999999999876544 566666664 999999999999999998777888999998999999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHHHHcCC-CCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008839 384 DRINLTPVALMEGGALAKTLFQA-EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 384 ~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
+.+++++.|..||+++++||+|. .....++..+|.++|++|+++++|+||+||++.+.++.+...++....++...+.+
T Consensus 295 ~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 374 (441)
T PRK08010 295 GGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT 374 (441)
T ss_pred CCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCC
Confidence 99999999999999999999985 33345677899999999999999999999999988888888888888888777788
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
++|+||++|++||+|||+|++|+++.|+|+.++++|++++|++||.+.+++|||++|.+.++.
T Consensus 375 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 437 (441)
T PRK08010 375 RGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLF 437 (441)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999987653
No 30
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.2e-70 Score=577.77 Aligned_cols=451 Identities=29% Similarity=0.444 Sum_probs=393.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhc-cCC
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDES-NGF 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~-~~~ 147 (551)
|..+||++|||||+||++||.++++.|.+|+|||+... ......+||+|.|+||+|+|.++..++....+.+. ..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~---~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKN---PKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccC---CCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 34469999999999999999999999999999992000 00126799999999999999999988877766654 667
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec----CCEEEEc---CEEEEeCeEEEcCCCC
Q 008839 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD----PHTVDVD---GKLYSARHILISVGGR 220 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~----~~~v~v~---g~~~~~d~lviAtG~~ 220 (551)
|+... ...++|..+.++..+..+.+...+..+++..+|+++.+++.+++ .+++.++ +++++||+||||||++
T Consensus 78 G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 78 GIHVD-GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred CccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 77643 35789999999999888888888888888899999999999987 7788872 4589999999999999
Q ss_pred CCCCC-CCCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008839 221 PFIPD-IPGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 221 p~~p~-i~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
|+.++ ++.. ..++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++
T Consensus 157 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~ 236 (475)
T PRK06327 157 PRHLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTK 236 (475)
T ss_pred CCCCCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHH
Confidence 97544 3322 246788888888778999999999999999999999999999999999999888999999999999999
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECC--C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008839 299 RGIEFHTEESPQAILKSTDGSLSVKTNK--G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~--G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
+||+++++++|++++.++++ +.+.+.+ | +++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||+.|
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~ 315 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKG-VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVP 315 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCE-EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCC
Confidence 99999999999999876555 5566544 3 46999999999999999997667888999999999999999999999
Q ss_pred cEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcc
Q 008839 375 SIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLK 454 (551)
Q Consensus 375 ~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~ 454 (551)
+|||+|||+..+.+++.|..||+++|+||+|... ..++..+|+.+|++|+++++|++|++|++.+.++.+...++....
T Consensus 316 ~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~-~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~ 394 (475)
T PRK06327 316 NVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKG-HIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANG 394 (475)
T ss_pred CEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEEEcccccc
Confidence 9999999999888999999999999999998543 356778999999999999999999999998878888888887777
Q ss_pred cccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 455 ATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 455 ~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
++...+.+.+|+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++.
T Consensus 395 ~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 465 (475)
T PRK06327 395 RALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAA 465 (475)
T ss_pred hhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHH
Confidence 77767778899999999999999999999999999999999999999999999999999999999987644
No 31
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.1e-70 Score=593.05 Aligned_cols=440 Identities=30% Similarity=0.454 Sum_probs=386.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccC-CCcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNG-FGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~-~g~~ 150 (551)
+|||+||||||||++||..|++.|++|+||| +..+||+|.|+||+|+|.++..++........+. +|+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie----------~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 167 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIE----------RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA 167 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEe----------cCcceeeccccCccccHHHHHHHHHHHHHhcccccCCcc
Confidence 6999999999999999999999999999999 6689999999999999999999887776665442 4665
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHhC-CeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGI-YKNILINA-GITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFI 223 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~ 223 (551)
.. .+..+|..+.++....+..+... +...+.+. +|+++.+++.+++++++.+ ++ ..+.||+||||||++|..
T Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 168 AT-VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAV 246 (561)
T ss_pred CC-CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC
Confidence 32 45689999998888777776542 45556665 8999999999999988877 34 369999999999999999
Q ss_pred CCCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008839 224 PDIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 p~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|++||.+. +++..+.+.....+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+|+++.+.+.+.|++.||
T Consensus 247 p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI 325 (561)
T PRK13748 247 PPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGI 325 (561)
T ss_pred CCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCC
Confidence 99999764 5666666666667899999999999999999999999999999985 46777899999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCc
Q 008839 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD 381 (551)
++++++.+++++.+++. +.+.+.++ ++++|.|++|+|++||+.++.+++++++++++|+|.||+++||++|||||+||
T Consensus 326 ~i~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD 403 (561)
T PRK13748 326 EVLEHTQASQVAHVDGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGD 403 (561)
T ss_pred EEEcCCEEEEEEecCCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeee
Confidence 99999999999876544 55666666 59999999999999999987778899999999999999999999999999999
Q ss_pred CCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCC
Q 008839 382 VTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLP 461 (551)
Q Consensus 382 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
|++.+.+++.|..||++||.||+|.+. ..++..+|..+|++|+++++|++|++|++++.++.+...++....+++....
T Consensus 404 ~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 482 (561)
T PRK13748 404 CTDQPQFVYVAAAAGTRAAINMTGGDA-ALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFD 482 (561)
T ss_pred cCCCccchhHHHHHHHHHHHHHcCCCc-ccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCC
Confidence 999999999999999999999998653 4567788999999999999999999999987788888887877777766667
Q ss_pred CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008839 462 DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 462 ~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
..+|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.+...
T Consensus 483 ~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 547 (561)
T PRK13748 483 TRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ 547 (561)
T ss_pred CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999876554
No 32
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=7.9e-69 Score=563.09 Aligned_cols=425 Identities=30% Similarity=0.468 Sum_probs=376.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC-CCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTG-GVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~-~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+|||+||||||||++||..|++.|++|+|||+ .. .+||+|.|.||+|++.++..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~---------~~~~~GG~c~~~gciP~k~~~~~~~~------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEE---------SKAMYGGTCINIGCIPTKTLLVAAEK------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEec---------CCcccceeeecCccccchHhhhhhhc-------------
Confidence 69999999999999999999999999999993 22 37999999999999998876642
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEc----CEEEEeCeEEEcCCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVD----GKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~----g~~~~~d~lviAtG~~p~~p~i 226 (551)
..+|..+..+......++.....+.+.+.+|+++.+++.+++++++.+. ...+.||+||||||++|+.|++
T Consensus 61 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i 135 (438)
T PRK07251 61 -----NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPI 135 (438)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCC
Confidence 2477888887777777776666677888899999999999999988872 2479999999999999999999
Q ss_pred CCCC---ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008839 227 PGSE---YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 227 ~g~~---~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
||.+ .++++.+++.+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++..++++.+.+.+.+++.||++
T Consensus 136 ~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i 215 (438)
T PRK07251 136 PGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITF 215 (438)
T ss_pred CCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEE
Confidence 9963 4788888888877899999999999999999999999999999999999998889999999999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCC
Q 008839 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~ 383 (551)
+++++|++++.+++. +.+.. +|+++++|.|++|+|++|+++.++++..++.++++|+|.||+++||++|||||+|||+
T Consensus 216 ~~~~~V~~i~~~~~~-v~v~~-~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~ 293 (438)
T PRK07251 216 LLNAHTTEVKNDGDQ-VLVVT-EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVN 293 (438)
T ss_pred EcCCEEEEEEecCCE-EEEEE-CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC
Confidence 999999999875543 44443 5668999999999999999988777788888888899999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008839 384 DRINLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 384 ~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
+.+.+.+.|..||++++.++++.+. ...++..+|+.+|++|+++++|++|++|++.+.++.+....+..+.++......
T Consensus 294 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
T PRK07251 294 GGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDL 373 (438)
T ss_pred CCcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCC
Confidence 9989999999999999999997643 233566799999999999999999999999887888888878777777667777
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008839 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
++|+||++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.++.
T Consensus 374 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 374 RGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999987653
No 33
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.7e-68 Score=561.83 Aligned_cols=443 Identities=34% Similarity=0.547 Sum_probs=396.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||+||++||.+|++.|++|+||| +..+||+|.+.||+|+|.++..++..+.+.....+++..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie----------~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~ 70 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVE----------KEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEV 70 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCC
Confidence 3899999999999999999999999999999 677999999999999999999888877776666777654
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC-EEEEeCeEEEcCCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG-KLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g-~~~~~d~lviAtG~~p~~p~i~ 227 (551)
. ...++|..+..+.....+++.......+++.+++++.+++.+++++.+.+ ++ ..+.||+||+|||++|+.|++|
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 71 E-NVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred C-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCC
Confidence 3 35789999999888888888888888888999999999999999988877 22 5799999999999999988876
Q ss_pred -CCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008839 228 -GSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 228 -g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
+.+ .++++++.+.+...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~ 229 (461)
T TIGR01350 150 FDFDGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKIL 229 (461)
T ss_pred CCCCCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 433 47888888888888999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcC
Q 008839 305 TEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~ 382 (551)
++++|++++.++++ +.+.+.+| +++++|.|++|+|+.|++..+.++..+++++++|+|.||+++||+.|+|||+|||
T Consensus 230 ~~~~v~~i~~~~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~ 308 (461)
T TIGR01350 230 TNTKVTAVEKNDDQ-VVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDV 308 (461)
T ss_pred eCCEEEEEEEeCCE-EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeec
Confidence 99999999876655 56776667 4799999999999999998555788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008839 383 TDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
++.+++++.|..||+++|+||.+......++..+|..+|++|+++.+|+++++|++.+.++.+...++....++.....+
T Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (461)
T TIGR01350 309 IGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGET 388 (461)
T ss_pred CCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCC
Confidence 99889999999999999999998654345677899999999999999999999999987888888877776677666778
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008839 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
++|+|+++|+++++|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|.+.++..
T Consensus 389 ~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~ 452 (461)
T TIGR01350 389 DGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAAL 452 (461)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999775443
No 34
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-69 Score=500.42 Aligned_cols=454 Identities=41% Similarity=0.737 Sum_probs=405.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEc--cCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICE--LPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE--~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
..+||++|||||.+||+||.+++..|.+|.++| +|. +...++.+||+|.|.||+|+|+|..++-+-+.+.+...|
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~Pt---P~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~ky 93 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPT---PQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKY 93 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccC---CCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999999999999 432 345578899999999999999999999999999999999
Q ss_pred CcccCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---c--CEEEEeCeEEEcCCCCC
Q 008839 148 GWKYGT-EPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---D--GKLYSARHILISVGGRP 221 (551)
Q Consensus 148 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~--g~~~~~d~lviAtG~~p 221 (551)
||.... ....||..+.+..+..+..+.-.++-.+.+..|++++..+.|++++++.. . .+.++++.++||||.+|
T Consensus 94 GW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 94 GWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred CCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence 999875 58899999998888888776555555667778999999999999999887 2 35789999999999999
Q ss_pred CCCCCCC-CCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008839 222 FIPDIPG-SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 222 ~~p~i~g-~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
++|+||| .++.+++||++.+...|.+-+|+|+|++++|+|.+|+.+|.+||+..|+- ++++||.++++.+.+.|++.|
T Consensus 174 rYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI-~LrGFDqdmae~v~~~m~~~G 252 (503)
T KOG4716|consen 174 RYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI-LLRGFDQDMAELVAEHMEERG 252 (503)
T ss_pred CCCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe-ecccccHHHHHHHHHHHHHhC
Confidence 9999999 57899999999999999999999999999999999999999999999964 578899999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCeeec-CCCCeEeCCCCCCCCC
Q 008839 301 IEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMT-KNGAIEVDEYSGTAVP 374 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~t~~~ 374 (551)
|+|...+.+.+++..+++.+.|... .++ +-++|.|+||+|+.+.++.++++++|++++ .+|.|.||+.-+|++|
T Consensus 253 ikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp 332 (503)
T KOG4716|consen 253 IKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVP 332 (503)
T ss_pred CceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCC
Confidence 9999998889998877765555542 222 357999999999999999999999999996 4588999999999999
Q ss_pred cEEEeCcCCCC-CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeecc
Q 008839 375 SIWAVGDVTDR-INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFR 451 (551)
Q Consensus 375 ~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~ 451 (551)
+|||+||+... +.+++.|++.||.+|+.++++.....+|..+|+.+|+..|++.+||+|++|.+.++ ++++++..|.
T Consensus 333 ~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~ 412 (503)
T KOG4716|consen 333 YVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFK 412 (503)
T ss_pred ceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeecccc
Confidence 99999999985 78999999999999999999888889999999999999999999999999998864 8999999899
Q ss_pred CcccccccC-CCcEEEEEEEE-CCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhh
Q 008839 452 PLKATLSGL-PDRIFMKLVLC-AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTP 527 (551)
Q Consensus 452 ~~~~~~~~~-~~~~~~kl~~~-~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 527 (551)
+..|.+... ....|+|.+.+ .++.+|+|.|++||+|.|+++.++.|++.|+|..||.+++.+|||.+|.+..+.-.
T Consensus 413 P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~L~it 490 (503)
T KOG4716|consen 413 PLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTLSIT 490 (503)
T ss_pred ceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhheeEEEEE
Confidence 888876544 34569999998 56789999999999999999999999999999999999999999999998765433
No 35
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=5.6e-56 Score=464.49 Aligned_cols=402 Identities=18% Similarity=0.259 Sum_probs=309.5
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCC-cchHHHHHhhhhhhHhhhccCCCc
Q 008839 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGC-VPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+|||||||+||++||..|++. +.+|+|||+ ...++ +..| +|...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~---------~~~~~----~~~~~lp~~~------------------- 49 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEK---------DRDMS----FANCALPYYI------------------- 49 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEEC---------CCCcc----cccCCcchhh-------------------
Confidence 4799999999999999999885 689999993 11110 1111 12100
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEE-eEEEEecC--CEEEE-c---CE--EEEeCeEEEcCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE-GRGKIVDP--HTVDV-D---GK--LYSARHILISVGGR 220 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~i~~--~~v~v-~---g~--~~~~d~lviAtG~~ 220 (551)
.+ .......+... ....+..+.+++++. .++..+|+ +.+.+ + ++ ++.||+||||||++
T Consensus 50 --~~-~~~~~~~~~~~----------~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 50 --GE-VVEDRKYALAY----------TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred --cC-ccCCHHHcccC----------CHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 00 00000100000 011233456899875 56777765 45555 2 12 46899999999999
Q ss_pred CCCCCCCCCCceecc---hhhhcC-----CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHH
Q 008839 221 PFIPDIPGSEYAIDS---DAALDL-----PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFV 292 (551)
Q Consensus 221 p~~p~i~g~~~~~~~---~~~~~~-----~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l 292 (551)
|+.|++++ +.+++. ++...+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+
T Consensus 117 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l 195 (438)
T PRK13512 117 ANSLGFES-DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPI 195 (438)
T ss_pred CCCCCCCC-CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHH
Confidence 99888664 223322 222111 234789999999999999999999999999999999998888999999999
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCC
Q 008839 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 372 (551)
.+.|++.||+++++++|++++. . .+.+.+|+.+++|.|++|+|++||+++ +++.+++++++|+|.||+++||+
T Consensus 196 ~~~l~~~gI~i~~~~~v~~i~~--~---~v~~~~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~ 268 (438)
T PRK13512 196 LDELDKREIPYRLNEEIDAING--N---EVTFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETN 268 (438)
T ss_pred HHHHHhcCCEEEECCeEEEEeC--C---EEEECCCCEEEeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccC
Confidence 9999999999999999999963 2 366778888999999999999999987 67889998888999999999999
Q ss_pred CCcEEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCC
Q 008839 373 VPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG 441 (551)
Q Consensus 373 ~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~ 441 (551)
+|||||+|||++. +++++.|.+||+++++||+|.+. .+.++..+|.+.|++|+++++|+||+||++.
T Consensus 269 ~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~-- 346 (438)
T PRK13512 269 VPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF-- 346 (438)
T ss_pred CCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC--
Confidence 9999999999862 46788899999999999998543 2335678899999999999999999999875
Q ss_pred CeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccC-cccCCCchH
Q 008839 442 DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAE 519 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e 519 (551)
++.+....+......+ .+.+.||+||++|+++++|||+|++|++ +.|+|+.++++|++|+|++||.++ +++||+++.
T Consensus 347 ~~~~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~ 425 (438)
T PRK13512 347 DYKMVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSH 425 (438)
T ss_pred CcEEEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCc
Confidence 3555554443333322 5677899999999999999999999996 899999999999999999999996 999999997
Q ss_pred HHHHHHhhhhh
Q 008839 520 EFVTLRTPTRK 530 (551)
Q Consensus 520 ~~~~~~~~~~~ 530 (551)
.+..+..++.+
T Consensus 426 ~~~~~~~~~~~ 436 (438)
T PRK13512 426 PKDLINMIGYK 436 (438)
T ss_pred cccHHHHHHHh
Confidence 66555555443
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.4e-54 Score=454.09 Aligned_cols=406 Identities=26% Similarity=0.368 Sum_probs=313.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCC-cchHHHHHhhhhhhHhhhccCCCcc
Q 008839 74 DLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGC-VPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+|||||||+||+++|..|++.+ .+|+|||+ ...++ +..| +| +.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~---------~~~~~----~~~~~~~---------------------~~ 47 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEK---------TDIVS----FGACGLP---------------------YF 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEEC---------CCcce----eecCCCc---------------------eE
Confidence 6999999999999999999864 59999993 11110 0000 11 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE-c---CEEEE--eCeEEEcCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV-D---GKLYS--ARHILISVGGRP 221 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v-~---g~~~~--~d~lviAtG~~p 221 (551)
..+. ......+ .....+.+.+.+++++.+ .+..++ .+.+.+ + +..+. ||+||+|||++|
T Consensus 48 ~~~~-~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 48 VGGF-FDDPNTM-----------IARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred eccc-cCCHHHh-----------hcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 0000 0000000 011123345668998754 566665 355665 2 45666 999999999999
Q ss_pred CCCCCCCCC--ceecc---hhhhcCC-----CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHH
Q 008839 222 FIPDIPGSE--YAIDS---DAALDLP-----SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRD 290 (551)
Q Consensus 222 ~~p~i~g~~--~~~~~---~~~~~~~-----~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~ 290 (551)
..|++||.+ .+++. ++...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.+++. +++++.+
T Consensus 116 ~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~ 195 (444)
T PRK09564 116 IIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITD 195 (444)
T ss_pred CCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHH
Confidence 999999864 34433 2233221 24789999999999999999999999999999999988874 8999999
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCC
Q 008839 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
.+.+.+++.||+++++++|++++.++ ....+.++++ ++++|.+++|+|+.|++++ ++++|++++++|+|.||+++|
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~~~-~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~ 271 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIGED-KVEGVVTDKG-EYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGE 271 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEecCC-cEEEEEeCCC-EEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcc
Confidence 99999999999999999999997543 3244555544 6999999999999999887 788899888889999999999
Q ss_pred CCCCcEEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC
Q 008839 371 TAVPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY 440 (551)
Q Consensus 371 t~~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~ 440 (551)
|+.|||||+|||++. +++++.|.+||+++|+||+|.+.........+...|++|+++++|++|+||++.+
T Consensus 272 t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g 351 (444)
T PRK09564 272 TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLG 351 (444)
T ss_pred cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCC
Confidence 999999999999973 4688899999999999999865443333333345699999999999999999887
Q ss_pred CCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccCcccC-CCch
Q 008839 441 GDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDATVGVH-PTAA 518 (551)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~~~~~-pt~~ 518 (551)
.++.+...... ..+.+..+.+.+|+||++|++|++|||+|++|+. +.|+|+.++++|++++|++||.++.++| |+++
T Consensus 352 ~~~~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~ 430 (444)
T PRK09564 352 IDYKTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFA 430 (444)
T ss_pred CCeEEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCC
Confidence 67766665432 3344456677899999999999999999999995 8899999999999999999999998877 9999
Q ss_pred HHHHHHHhhhhh
Q 008839 519 EEFVTLRTPTRK 530 (551)
Q Consensus 519 e~~~~~~~~~~~ 530 (551)
|.+..+..++.+
T Consensus 431 ~~~~~~~~~~~~ 442 (444)
T PRK09564 431 RTWDALNVAGNV 442 (444)
T ss_pred CCcCHHHHHHHh
Confidence 988776666554
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1.2e-47 Score=401.76 Aligned_cols=337 Identities=24% Similarity=0.346 Sum_probs=278.1
Q ss_pred HHHhCCeEEEE-eEEEEec--CCEEEE-c---CEEEE--eCeEEEcCCCCCCCCCCCCCC--ceecchhhhc-------C
Q 008839 180 ILINAGITLIE-GRGKIVD--PHTVDV-D---GKLYS--ARHILISVGGRPFIPDIPGSE--YAIDSDAALD-------L 241 (551)
Q Consensus 180 ~~~~~~v~~~~-~~~~~i~--~~~v~v-~---g~~~~--~d~lviAtG~~p~~p~i~g~~--~~~~~~~~~~-------~ 241 (551)
++.+.+++++. ..+..++ .+.+.+ + ++.+. ||+||||||++|..|++||.+ .+++..++.. +
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l 132 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYI 132 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHH
Confidence 34667899864 4666665 455555 1 34677 999999999999999999964 3444333221 1
Q ss_pred -CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCce
Q 008839 242 -PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGS 319 (551)
Q Consensus 242 -~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~ 319 (551)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|++.||++++++.|+++..++ .
T Consensus 133 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~- 210 (427)
T TIGR03385 133 DKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE-R- 210 (427)
T ss_pred hhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-C-
Confidence 1346899999999999999999999999999999998874 55889999999999999999999999999997643 2
Q ss_pred EEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC----------CCCh
Q 008839 320 LSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR----------INLT 389 (551)
Q Consensus 320 ~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~----------~~~~ 389 (551)
+ +.+.+|+++++|.||+|+|++|++++ +++++++++++|+|.||+++||+.|+|||+|||+.. ++++
T Consensus 211 ~-v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 287 (427)
T TIGR03385 211 V-KVFTSGGVYQADMVILATGIKPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLA 287 (427)
T ss_pred E-EEEcCCCEEEeCEEEECCCccCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeech
Confidence 3 56678888999999999999999987 678899998889999999999999999999999963 3678
Q ss_pred HHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEE
Q 008839 390 PVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLV 469 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~ 469 (551)
+.|.+||+++|+||.|....+..+..+|.++|++|+++++|+++++|++.+.++.+....+....+.. .+.+.+|+||+
T Consensus 288 ~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~kli 366 (427)
T TIGR03385 288 WGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYY-PGNSPLHLKLI 366 (427)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcC-CCCceEEEEEE
Confidence 89999999999999986543334446788999999999999999999988767776665544333332 46678999999
Q ss_pred EECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccCc-ccCCCchHHHH
Q 008839 470 LCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDATV-GVHPTAAEEFV 522 (551)
Q Consensus 470 ~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~~-~~~pt~~e~~~ 522 (551)
+|+++++|||+|++|++ +.|+|+.++++|++++|++||.+++ ..||.++..+.
T Consensus 367 ~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~~ 421 (427)
T TIGR03385 367 YEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWD 421 (427)
T ss_pred EECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCccc
Confidence 99999999999999998 9999999999999999999999886 47788876443
No 38
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.3e-44 Score=400.20 Aligned_cols=386 Identities=17% Similarity=0.297 Sum_probs=290.0
Q ss_pred ccEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 73 FDLFTIGAGSGGVRASRFAANF----GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~----G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
.+|||||+|+||+.+|..|++. +++|+||++ ...++ +..|..+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~---------e~~~~----Y~r~~L~~~------------------ 52 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCE---------EPRIA----YDRVHLSSY------------------ 52 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEEC---------CCCCc----ccCCcchHh------------------
Confidence 4899999999999999999763 579999982 11100 000100000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecCC--EEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDPH--TVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~~--~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
+.. ..+.. +......++++.+|+++.++ +..++.. .+.+ +++.+.||+||||||++|+.|
T Consensus 53 --~~~---~~~~~-----------l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 53 --FSH---HTAEE-----------LSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred --HcC---CCHHH-----------ccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCC
Confidence 000 01111 11112245566799999885 6667654 3444 677899999999999999999
Q ss_pred CCCCCCc--ee---cchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHH
Q 008839 225 DIPGSEY--AI---DSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQ 295 (551)
Q Consensus 225 ~i~g~~~--~~---~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 295 (551)
++||.+. ++ +.+++..+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. ++++..+.+.+.
T Consensus 117 ~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~ 196 (847)
T PRK14989 117 PIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRK 196 (847)
T ss_pred CCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHH
Confidence 9999753 33 44555433 235789999999999999999999999999999999998875 899999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcC-CceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008839 296 MSLRGIEFHTEESPQAILKST-DGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
|+++||++++++.+++|..++ +....+.+.+|+++++|.||+|+|.+|++++ ++.+|++++++|+|.||+++||+.|
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts~p 274 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTSDP 274 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCCCC
Confidence 999999999999999997643 2335688899999999999999999999986 7788999999999999999999999
Q ss_pred cEEEeCcCCCC----CCChHHHHHhHHHHHHHHcCCCCCCCCCCCcc-EEEecCCceEEeeCCHHHHHhcCCCeEEEEee
Q 008839 375 SIWAVGDVTDR----INLTPVALMEGGALAKTLFQAEPTKPDYSAVP-SAVFSQPPIGQVGLSEEQAIQEYGDIDVFTAN 449 (551)
Q Consensus 375 ~vya~GD~~~~----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~-~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~ 449 (551)
||||+|||+.. ..+++.|..||+++|+||+|....+ +....+ ...+.+.+++++|... .........
T Consensus 275 ~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~-~g~~~~~~lk~~G~~v~s~G~~~----~~~~~~~~~--- 346 (847)
T PRK14989 275 DIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAF-EGADLSAKLKLLGVDVGGIGDAH----GRTPGARSY--- 346 (847)
T ss_pred CEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCC-CCcccceEEEECCcceEeccccc----CCCCCceeE---
Confidence 99999999975 3478899999999999999876432 333344 3445567888888311 110000010
Q ss_pred ccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCC--hhHHHHHHHHHHHCCCCHHHHccCccc---CCCc-hHHH
Q 008839 450 FRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED--APEIVQGFAVAVKAGLTKADFDATVGV---HPTA-AEEF 521 (551)
Q Consensus 450 ~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~--~~e~i~~~~~~i~~~~~~~~l~~~~~~---~pt~-~e~~ 521 (551)
.+.+....+|.||++++++++|+|++++|+. ..++++.+...+..+.+.++|....++ ||+. +|++
T Consensus 347 ------~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 418 (847)
T PRK14989 347 ------VYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDKL 418 (847)
T ss_pred ------EEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCCCCCCCCccccccC
Confidence 1123445789999999999999999999984 478888888777777888888776654 8877 5544
No 39
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=3e-40 Score=340.05 Aligned_cols=349 Identities=17% Similarity=0.266 Sum_probs=255.6
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.||||||||+||+++|..|++. ..+|+||++ +.. . .+..+..++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~----------~~~--~-~y~~~~l~~~~------------------- 50 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITA----------DSG--D-EYNKPDLSHVF------------------- 50 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeC----------CCC--C-CcCcCcCcHHH-------------------
Confidence 5899999999999999999884 568999982 110 0 00000000000
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
. ......++.. ....+++++.+++++.+ ++..++. +.+.+++..+.||+||+|||++|..|++|
T Consensus 51 -~--~~~~~~~~~~----------~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~~~p~i~ 117 (377)
T PRK04965 51 -S--QGQRADDLTR----------QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIP 117 (377)
T ss_pred -h--CCCCHHHhhc----------CCHHHHHHhCCCEEECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCCCCCCCC
Confidence 0 0001111111 01223456679998865 5666664 45666888999999999999999999999
Q ss_pred CCCceecchhhhcC------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcC
Q 008839 228 GSEYAIDSDAALDL------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 228 g~~~~~~~~~~~~~------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~G 300 (551)
|.+.+++...+.+. ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus 118 G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~g 197 (377)
T PRK04965 118 GRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMG 197 (377)
T ss_pred CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCC
Confidence 98655543332221 134689999999999999999999999999999999988876 68889999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeC
Q 008839 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~G 380 (551)
|+++++++++++..+++. ..+.+.+|+++++|.||+|+|..|++.+ ++..|++.+. | |.||+++||+.|||||+|
T Consensus 198 V~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~~-g-i~vd~~l~ts~~~VyA~G 272 (377)
T PRK04965 198 VHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVNR-G-IVVDSYLQTSAPDIYALG 272 (377)
T ss_pred CEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCCcchHH--HHHCCCCcCC-C-EEECCCcccCCCCEEEee
Confidence 999999999999876554 6788889999999999999999999886 5677887753 4 999999999999999999
Q ss_pred cCCCCC----CChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccc
Q 008839 381 DVTDRI----NLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKAT 456 (551)
Q Consensus 381 D~~~~~----~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~ 456 (551)
||+... +.+..|..||+++|+||+|.+..+......+...+.+.++.++|....+ .. .|.
T Consensus 273 D~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~----------~~~ 336 (377)
T PRK04965 273 DCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ------DL----------RWQ 336 (377)
T ss_pred ecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC------Cc----------eEE
Confidence 999742 4567799999999999999765433223334455667789999965421 00 011
Q ss_pred cccCCCcEEEEEEEECCCCeEEEEEEECCChhH
Q 008839 457 LSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPE 489 (551)
Q Consensus 457 ~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e 489 (551)
..+..+..|.|+++ ++|+|+|+.++|+.+.+
T Consensus 337 ~~~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 337 INAESQGMVAKGVD--EAGQLRAFVVSEDRMKE 367 (377)
T ss_pred EEeCCCCeEEEEEc--cCCcEEEEEEEChhHHH
Confidence 11223334667776 57999999999997544
No 40
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=4.5e-39 Score=333.17 Aligned_cols=358 Identities=14% Similarity=0.152 Sum_probs=254.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGA--SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+|||||||+||++||..|++.|. +|+||++. .... +..+.-++.++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e---------~~~~----y~r~~l~~~~~~---------------- 53 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE---------RHLP----YERPPLSKSMLL---------------- 53 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCC---------CCCC----CCCCCCCHHHHC----------------
Confidence 3589999999999999999999776 89999931 1000 000000000000
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~ 225 (551)
+ ... ... . + ...+++.+.+++++.+ .+..++. +.+.+ ++..+.||+||||||++|+.++
T Consensus 54 ---~-~~~--~~~------~---~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p 116 (396)
T PRK09754 54 ---E-DSP--QLQ------Q---V--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP 116 (396)
T ss_pred ---C-CCc--ccc------c---c--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC
Confidence 0 000 000 0 0 0012345568999987 4666665 45555 6778999999999999998877
Q ss_pred CCCC--Cceec---chhhhcCC---CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHH
Q 008839 226 IPGS--EYAID---SDAALDLP---SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQM 296 (551)
Q Consensus 226 i~g~--~~~~~---~~~~~~~~---~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l 296 (551)
+++. +.+++ .+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++.+.+.+.+.+
T Consensus 117 ~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 196 (396)
T PRK09754 117 LLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRH 196 (396)
T ss_pred CCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHH
Confidence 6653 33443 45554433 24789999999999999999999999999999999998876 7888899999999
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcE
Q 008839 297 SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI 376 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~v 376 (551)
+++||+++++++|++++. ++. +.+.+.+|+++++|.||+++|..|++.+ ++..+++.+ ++|.||+++||+.|||
T Consensus 197 ~~~GV~i~~~~~V~~i~~-~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~I 270 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVD-GEK-VELTLQSGETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAI 270 (396)
T ss_pred HHCCCEEEeCCeeEEEEc-CCE-EEEEECCCCEEECCEEEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCCE
Confidence 999999999999999976 333 6688889999999999999999999886 566777653 5699999999999999
Q ss_pred EEeCcCCCC---------CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEE
Q 008839 377 WAVGDVTDR---------INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFT 447 (551)
Q Consensus 377 ya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~ 447 (551)
||+|||+.. .++|+.|..||++||+||+|....+. .....|....+.++.++|....+ .+ +..
T Consensus 271 yA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~------~~-~~~ 342 (396)
T PRK09754 271 FAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLL-PPPWFWSDQYSDNLQFIGDMRGD------DW-LCR 342 (396)
T ss_pred EEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCC-CCCceEEEeCCccEEEeeCCCCC------EE-EEe
Confidence 999999952 25678999999999999998654322 22223444556789999965421 11 111
Q ss_pred eeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCC
Q 008839 448 ANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLT 503 (551)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~ 503 (551)
. +.....|+.+++ ++|+|+|+..+|+.. -...+..+|+.+..
T Consensus 343 ~----------~~~~~~~~~~~~--~~~~l~g~~~~~~~~--~~~~~~~~~~~~~~ 384 (396)
T PRK09754 343 G----------NPETQKAIWFNL--QNGVLIGAVTLNQGR--EIRPIRKWIQSGKT 384 (396)
T ss_pred c----------CCCCceEEEEEe--eCCEEEEEEEECCHH--HHHHHHHHHHCCCC
Confidence 0 112233555444 579999999999742 23455566777765
No 41
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=9.9e-39 Score=354.25 Aligned_cols=365 Identities=21% Similarity=0.287 Sum_probs=266.1
Q ss_pred EEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 75 LFTIGAGSGGVRASRFAANF---GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 75 VvIIGgG~aGl~aA~~l~~~---G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
|||||||+||+++|.+|++. +++|+|||+ ...++ +..+..+..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~---------e~~~~----y~r~~L~~~l-------------------- 47 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGE---------EPHPN----YNRILLSSVL-------------------- 47 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeC---------CCCCC----cccccccHHH--------------------
Confidence 68999999999999999874 579999992 11110 0000000000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
.+ ..+.+++ .....+++++.+++++.+ .+..++. +.+.+ ++..+.||+||||||+.|+.|++|
T Consensus 48 ~g--~~~~~~l-----------~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip 114 (785)
T TIGR02374 48 QG--EADLDDI-----------TLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIP 114 (785)
T ss_pred CC--CCCHHHc-----------cCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence 00 0111111 111123456679999987 5777765 44555 677899999999999999999999
Q ss_pred CCC--cee---cchhhhc---CCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHh
Q 008839 228 GSE--YAI---DSDAALD---LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSL 298 (551)
Q Consensus 228 g~~--~~~---~~~~~~~---~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~ 298 (551)
|.+ .++ +.+++.. ....+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++...+.+.+.+++
T Consensus 115 G~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 115 GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred CCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHH
Confidence 965 233 3333332 2235789999999999999999999999999999999998875 899999999999999
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEE
Q 008839 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWA 378 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya 378 (551)
.||++++++.++++..++. ...|.+.||+++++|.||+++|.+|++++ ++.++++++ |+|.||+++||+.|||||
T Consensus 195 ~GV~v~~~~~v~~i~~~~~-~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~IyA 269 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATK-ADRIRFKDGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIYA 269 (785)
T ss_pred cCCEEEeCCceEEEEcCCc-eEEEEECCCCEEEcCEEEECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEEE
Confidence 9999999999999976543 36688899999999999999999999987 667788876 679999999999999999
Q ss_pred eCcCCCCC----CChHHHHHhHHHHHHHHcCCC-CCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCc
Q 008839 379 VGDVTDRI----NLTPVALMEGGALAKTLFQAE-PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPL 453 (551)
Q Consensus 379 ~GD~~~~~----~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~ 453 (551)
+|||+... .++..|..||+++|.||+|.+ ..+..........+.+.+++++|...... +.....
T Consensus 270 ~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~-----~~~~~~------ 338 (785)
T TIGR02374 270 VGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE-----RTTSIK------ 338 (785)
T ss_pred eeecceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC-----CcEEEE------
Confidence 99999752 467789999999999999876 32222222223446678999999765321 111111
Q ss_pred ccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHc
Q 008839 454 KATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFD 508 (551)
Q Consensus 454 ~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~ 508 (551)
+.+.....|.|++++ +++|+|++++|+.. + ...+..++.++..+.+..
T Consensus 339 ---~~d~~~~~y~kl~~~--~~rLlGavlvgd~~-~-~~~L~~li~~~~~l~~~~ 386 (785)
T TIGR02374 339 ---IYDEQKGIYKKLVLS--DDKLLGAVLFGDTS-D-YGRLLDMVLKQADISEDP 386 (785)
T ss_pred ---EEcCCCCEEEEEEEE--CCEEEEEEEECCHH-H-HHHHHHHHHcCCCCCcCh
Confidence 112344569999996 57999999999753 3 355566677776655443
No 42
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=5.4e-36 Score=312.34 Aligned_cols=279 Identities=21% Similarity=0.305 Sum_probs=213.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+.+|||||||+||+.+|..|.+.+.+|+|||+ .+... +..++|. ..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~------~~~~~-------~~~~l~~---------------------~~ 55 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISP------RNHML-------FTPLLPQ---------------------TT 55 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcC------CCCcc-------hhhhHHH---------------------hc
Confidence 46899999999999999999877899999992 11000 0001110 00
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-----------cCEEEEeCeEEEcCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-----------DGKLYSARHILISVG 218 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-----------~g~~~~~d~lviAtG 218 (551)
....+...+.. .+...+...+++++.+++..+|. +.+.+ ++.++.||+||||||
T Consensus 56 --~g~~~~~~~~~-----------~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG 122 (424)
T PTZ00318 56 --TGTLEFRSICE-----------PVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHG 122 (424)
T ss_pred --ccCCChHHhHH-----------HHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCC
Confidence 00111121111 12233455689999999988875 45555 345799999999999
Q ss_pred CCCCCCCCCCCC-ce---ecchhhhcC----------C----------CCCCeEEEEcCcHHHHHHHHHHHh--------
Q 008839 219 GRPFIPDIPGSE-YA---IDSDAALDL----------P----------SKPEKIAIVGGGYIALEFAGIFSG-------- 266 (551)
Q Consensus 219 ~~p~~p~i~g~~-~~---~~~~~~~~~----------~----------~~~~~vvViG~G~~g~e~a~~l~~-------- 266 (551)
+.+..|++||.+ +. .+.++...+ . ...++++|||+|++|+|+|..|..
T Consensus 123 s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~ 202 (424)
T PTZ00318 123 ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRN 202 (424)
T ss_pred cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999964 21 122221110 0 112489999999999999999875
Q ss_pred ------CCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecC
Q 008839 267 ------LTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340 (551)
Q Consensus 267 ------~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G 340 (551)
.+.+|+++++.+.+++.+++++.+.+++.|+++||+++++++|+++..+ . |.+.+|+++++|.+|+++|
T Consensus 203 ~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~--~---v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 203 LNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK--E---VVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred hhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC--E---EEECCCCEEEccEEEEccC
Confidence 3789999999999999999999999999999999999999999999642 2 6688999999999999999
Q ss_pred cCCCCCCCCccccCeeecCCCCeEeCCCCC-CCCCcEEEeCcCCCC-----CCChHHHHHhHHHHHHHHcC
Q 008839 341 RRPNTKNLGLEKVGVKMTKNGAIEVDEYSG-TAVPSIWAVGDVTDR-----INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 341 ~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~-t~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~g 405 (551)
..|+. + ++.++++++++|+|.||+++| +++|||||+|||+.. ++.+..|++||+++|+||..
T Consensus 278 ~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 278 VGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 99985 4 567788888889999999999 599999999999983 56788999999999999864
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-35 Score=295.11 Aligned_cols=277 Identities=20% Similarity=0.271 Sum_probs=213.2
Q ss_pred CccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCC-CCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 72 DFDLFTIGAGSGGVRASRFAANF--GASVAICELPFS-TISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~-~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
+.+|||||||++|+.+|..|.+. +.+|+|||+..+ .+++.......
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~------------------------------- 51 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVAT------------------------------- 51 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhc-------------------------------
Confidence 46899999999999999999996 489999993111 00000000000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
..++..+ +...+...+... +++++.+++..+|. ++|.+ +++.+.||+||+|+|+.+..+
T Consensus 52 ------g~l~~~~-----------i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 52 ------GTLSESE-----------IAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred ------CCCChhh-----------eeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcC
Confidence 0111111 111223344433 49999999999875 45666 447899999999999999999
Q ss_pred CCCCC-Cc---eecchhhhcC-----------CCCC-----CeEEEEcCcHHHHHHHHHHHhC-------------CCeE
Q 008839 225 DIPGS-EY---AIDSDAALDL-----------PSKP-----EKIAIVGGGYIALEFAGIFSGL-------------TSEV 271 (551)
Q Consensus 225 ~i~g~-~~---~~~~~~~~~~-----------~~~~-----~~vvViG~G~~g~e~a~~l~~~-------------g~~V 271 (551)
.+||. ++ +.+.++..++ .... ..++|+|+|++|+|+|..|.++ ..+|
T Consensus 115 gi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V 194 (405)
T COG1252 115 GIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRV 194 (405)
T ss_pred CCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEE
Confidence 99995 33 2333443221 1111 2699999999999999988654 1389
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEecCcCCCCCCCCc
Q 008839 272 HVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGRRPNTKNLGL 350 (551)
Q Consensus 272 tlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~~p~~~~l~l 350 (551)
+++++.+.++|.+++++++..++.|+++||++++++.|++++.+. |++.+|+ +|++|.+|||+|.+++.. +
T Consensus 195 ~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-----v~~~~g~~~I~~~tvvWaaGv~a~~~---~ 266 (405)
T COG1252 195 ILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-----VTLKDGEEEIPADTVVWAAGVRASPL---L 266 (405)
T ss_pred EEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-----EEEccCCeeEecCEEEEcCCCcCChh---h
Confidence 999999999999999999999999999999999999999997543 7777777 499999999999999886 4
Q ss_pred cc-cCeeecCCCCeEeCCCCCC-CCCcEEEeCcCCCC------CCChHHHHHhHHHHHHHHc
Q 008839 351 EK-VGVKMTKNGAIEVDEYSGT-AVPSIWAVGDVTDR------INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 351 ~~-~gl~~~~~G~i~vd~~~~t-~~~~vya~GD~~~~------~~~~~~A~~~g~~aa~~i~ 404 (551)
++ .+++.|+.|++.||+++|+ ++|+|||+|||+.. |+.+..|.+||+++|+||.
T Consensus 267 ~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~ 328 (405)
T COG1252 267 KDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIK 328 (405)
T ss_pred hhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 55 4788888999999999996 99999999999974 5788899999999999986
No 44
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.1e-34 Score=289.99 Aligned_cols=280 Identities=26% Similarity=0.322 Sum_probs=207.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
|||+|||||+||+++|..|++.|++|+||| +...||.|.....+ .+++.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~---------------~~~~~~~~--- 52 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIE----------GMEPGGQLTTTTEV---------------ENYPGFPE--- 52 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------ccCCCcceeecccc---------------cccCCCCC---
Confidence 699999999999999999999999999999 44477776532110 11111110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC----EEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH----TVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~----~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
...... +...+.+.+++.+++++...+..+++. .+.. ++..+.||+||+|||+.|..|++|
T Consensus 53 ---~~~~~~-----------~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~ 118 (300)
T TIGR01292 53 ---GISGPE-----------LMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP 118 (300)
T ss_pred ---CCChHH-----------HHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC
Confidence 011111 122333455667899888777666543 3333 557899999999999999988899
Q ss_pred CCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc-Cc
Q 008839 228 GSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR-GI 301 (551)
Q Consensus 228 g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~-Gv 301 (551)
|.+. +............+++++|||+|.+|+|+|..|++.+.+|+++.+.+.+.. ...+.+.+++. ||
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------~~~~~~~l~~~~gv 192 (300)
T TIGR01292 119 GEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------EKILLDRLRKNPNI 192 (300)
T ss_pred ChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------CHHHHHHHHhCCCe
Confidence 8542 111111111112468999999999999999999999999999999876432 34456667777 99
Q ss_pred EEEcCcccEEEEEcCCceEEEEEC---C--CeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcE
Q 008839 302 EFHTEESPQAILKSTDGSLSVKTN---K--GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI 376 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~---~--G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~v 376 (551)
++++++.+++++.++ ....+.+. + ++++++|.+++|+|++|+.++ ++.. ++++++|++.||++++|++|||
T Consensus 193 ~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~v 268 (300)
T TIGR01292 193 EFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPGV 268 (300)
T ss_pred EEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCCE
Confidence 999999999998654 32344432 2 357999999999999999987 4454 6778889999999999999999
Q ss_pred EEeCcCCC-CCCChHHHHHhHHHHHHHHc
Q 008839 377 WAVGDVTD-RINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 377 ya~GD~~~-~~~~~~~A~~~g~~aa~~i~ 404 (551)
||+|||+. .++.+..|+.||+.||.+|.
T Consensus 269 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 269 FAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred EEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 99999998 57888899999999999986
No 45
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.5e-34 Score=289.81 Aligned_cols=286 Identities=21% Similarity=0.267 Sum_probs=207.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||..|++.|+++++|| ....||.|....-+ +.++
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie----------~~~~gg~~~~~~~~--------------------~~~~ 54 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT----------GMEKGGQLTTTTEV--------------------ENWP 54 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE----------eecCCCceecCceE--------------------CCCC
Confidence 46899999999999999999999999999999 44578876532111 1111
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p~i 226 (551)
. .....+++.+..+.. +.....++++..+.+..++ ...+.+ +...+.||+||+|||+.|+.|++
T Consensus 55 ~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i 122 (321)
T PRK10262 55 G-DPNDLTGPLLMERMH-----------EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGL 122 (321)
T ss_pred C-CCCCCCHHHHHHHHH-----------HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCC
Confidence 0 012234444333322 2333345666555543333 233333 34478999999999999999999
Q ss_pred CCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008839 227 PGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 227 ~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
||.+. +..+.........+++++|||+|++|+|+|..|++.+.+|+++++.+.+. .++.+.+.+.+.|++.||
T Consensus 123 ~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV 200 (321)
T PRK10262 123 PSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNI 200 (321)
T ss_pred CCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCe
Confidence 98542 11221111222357899999999999999999999999999999987652 356678888999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCC------eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC-----CCC
Q 008839 302 EFHTEESPQAILKSTDGSLSVKTNKG------TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE-----YSG 370 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G------~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-----~~~ 370 (551)
++++++.++++..++.+...|++.++ +++++|.|++++|+.|+..++ . .++.++ +|+|.||+ +++
T Consensus 201 ~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~~~~~ 276 (321)
T PRK10262 201 ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQ 276 (321)
T ss_pred EEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcccccc
Confidence 99999999999876544334554322 369999999999999999863 2 245554 58899997 789
Q ss_pred CCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008839 371 TAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 371 t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|++|+|||+|||++. ......|+.+|..||..|.
T Consensus 277 t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 277 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred cCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 999999999999975 4566679999999998765
No 46
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.1e-33 Score=301.56 Aligned_cols=284 Identities=21% Similarity=0.260 Sum_probs=204.2
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|.+.|||+||||||||++||..|++.|++|+||| +..+||+|....++. +++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE----------~~~~GG~~~~~~~i~---------------~~p--- 52 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIE----------KDDFGGQITITSEVV---------------NYP--- 52 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------cCCCCceEEeccccc---------------cCC---
Confidence 4557999999999999999999999999999999 567899876433221 011
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC----EEEEcCEEEEeCeEEEcCCCCCCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH----TVDVDGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~----~v~v~g~~~~~d~lviAtG~~p~~p 224 (551)
+........+.. .+...+.+.+++++.+++..++.. .+..++..+.++++|+|||++|+.|
T Consensus 53 ----g~~~~~~~~l~~-----------~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 53 ----GILNTTGPELMQ-----------EMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKL 117 (555)
T ss_pred ----CCcCCCHHHHHH-----------HHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCC
Confidence 011112222222 222344556888887776666532 2333444689999999999999999
Q ss_pred CCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc
Q 008839 225 DIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 225 ~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 299 (551)
++||.+. +..+.........+++++|||+|++|+|+|..|+++|.+|+++++.+.+.. .... ..+.++..
T Consensus 118 ~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~~ 192 (555)
T TIGR03143 118 GFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNHP 192 (555)
T ss_pred CCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhCC
Confidence 9999632 111111111122478999999999999999999999999999999876532 2222 23334557
Q ss_pred CcEEEcCcccEEEEEcCCceEEEE---ECCCeEE----EeeE----EEEecCcCCCCCCCCccccCeeecCCCCeEeCCC
Q 008839 300 GIEFHTEESPQAILKSTDGSLSVK---TNKGTVD----GFSH----VMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY 368 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~~i----~~d~----vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~ 368 (551)
||++++++.|+++..++ ....+. ..+|+.. ++|. |++++|+.|++.++ + .+++++++|+|.||++
T Consensus 193 gV~i~~~~~V~~i~~~~-~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~--~-~~l~l~~~G~I~vd~~ 268 (555)
T TIGR03143 193 KIEVKFNTELKEATGDD-GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELF--K-GVVELDKRGYIPTNED 268 (555)
T ss_pred CcEEEeCCEEEEEEcCC-cEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHH--h-hhcccCCCCeEEeCCc
Confidence 99999999999997543 212222 2456533 3666 99999999999863 3 3578888899999999
Q ss_pred CCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008839 369 SGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 369 ~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
++|++|+|||+|||+.. +..+..|+.||++||.+|.
T Consensus 269 ~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 269 METNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred cccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 99999999999999863 4567789999999999974
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=6e-34 Score=298.48 Aligned_cols=276 Identities=24% Similarity=0.319 Sum_probs=205.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+|||||+||+++|..|++.|++|+|||+ ...+||.+.+ | +|. +
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~---------~~~~GG~l~~-g-ip~------------------~--- 179 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEA---------LHKPGGVVTY-G-IPE------------------F--- 179 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCcEeee-c-CCC------------------c---
Confidence 358999999999999999999999999999993 3457776532 1 110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCC-CCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGG-RPFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~-~p~~p~i~g~ 229 (551)
..+ .++.. ...+.+.+.+++++.+... ...+.+++....||+||||||+ .|+.|++||.
T Consensus 180 -----~~~-~~~~~-----------~~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~ 239 (449)
T TIGR01316 180 -----RLP-KEIVV-----------TEIKTLKKLGVTFRMNFLV---GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGE 239 (449)
T ss_pred -----cCC-HHHHH-----------HHHHHHHhCCcEEEeCCcc---CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCC
Confidence 001 11111 1123456679999887532 2333333223579999999998 6898999996
Q ss_pred C--ceecchhhhcC---------------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHH
Q 008839 230 E--YAIDSDAALDL---------------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFV 292 (551)
Q Consensus 230 ~--~~~~~~~~~~~---------------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l 292 (551)
+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++.+.+.... + .....
T Consensus 240 ~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~--~--~~~~~ 315 (449)
T TIGR01316 240 ELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM--T--ARVEE 315 (449)
T ss_pred CCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC--C--CCHHH
Confidence 5 35554444321 12468999999999999999999999999999998764211 1 11233
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC---------CC-----------eEEEeeEEEEecCcCCCCCCCCcc
Q 008839 293 AEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN---------KG-----------TVDGFSHVMFATGRRPNTKNLGLE 351 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~---------~G-----------~~i~~d~vi~a~G~~p~~~~l~l~ 351 (551)
.+.+++.||++++++.++++..++++ ...|++. +| .++++|.||+|+|..|++.+ ++
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~--l~ 393 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIM--AE 393 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchh--hh
Confidence 45678899999999999999875443 2234332 23 26999999999999999876 67
Q ss_pred ccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 352 KVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 352 ~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
..+++++++|+|.||++++|+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 394 ~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 394 TTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred ccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77899998999999999999999999999999888888999999999999985
No 48
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.5e-33 Score=300.61 Aligned_cols=283 Identities=23% Similarity=0.346 Sum_probs=208.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
...|||+||||||||++||.+|++.|++|+||| . .+||++.+.-.++ ++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~----------~-~~GG~~~~~~~~~---------------~~~---- 259 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA----------E-RIGGQVKDTVGIE---------------NLI---- 259 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------c-CCCCccccCcCcc---------------ccc----
Confidence 346999999999999999999999999999998 3 3788875321010 000
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--C--EEEE-cCEEEEeCeEEEcCCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--H--TVDV-DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~--~v~v-~g~~~~~d~lviAtG~~p~~ 223 (551)
+.+...+.++.. .+.+.+.+.+++++.+ ++..++. . .+.+ ++..+.||++|+|||++|+.
T Consensus 260 ---~~~~~~~~~l~~-----------~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 260 ---SVPYTTGSQLAA-----------NLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred ---ccCCCCHHHHHH-----------HHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 011123333322 2233445568888775 4444432 2 3344 56689999999999999999
Q ss_pred CCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008839 224 PDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 224 p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
|++||.+. +............+++++|||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+++
T Consensus 326 ~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~ 399 (515)
T TIGR03140 326 LGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKS 399 (515)
T ss_pred CCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhc
Confidence 99998531 111111111112478999999999999999999999999999998876532 3446667776
Q ss_pred -cCcEEEcCcccEEEEEcCCceEEEEECC---C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCC
Q 008839 299 -RGIEFHTEESPQAILKSTDGSLSVKTNK---G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372 (551)
Q Consensus 299 -~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 372 (551)
.||++++++.++++..++++...|.+.+ | +++++|.|++|+|+.|++++ ++.. ++++++|+|.||+++||+
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~--l~~~-~~~~~~G~I~vd~~~~Ts 476 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEW--LKDA-VELNRRGEIVIDERGRTS 476 (515)
T ss_pred CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchH--Hhhh-cccCCCCeEEECCCCCCC
Confidence 5999999999999987654433465543 2 46999999999999999997 4444 777888999999999999
Q ss_pred CCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHcC
Q 008839 373 VPSIWAVGDVTDRI-NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 373 ~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~g 405 (551)
+|+|||+|||+..+ +++..|+.+|..||.++.+
T Consensus 477 ~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 477 VPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 99999999999864 5677899999999998864
No 49
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=7.4e-34 Score=293.06 Aligned_cols=370 Identities=22% Similarity=0.285 Sum_probs=274.2
Q ss_pred CccEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 72 DFDLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
..++||||.|++|..+..++.+ .-++|+++-. .+.... ....-+..
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~------Ep~~nY-------~Ri~Ls~v------------------ 51 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGE------EPRPNY-------NRILLSSV------------------ 51 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEecc------CCCccc-------cceeeccc------------------
Confidence 3579999999999999999998 3468999861 000000 00000000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCCEEEE---cCEEEEeCeEEEcCCCCCCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPHTVDV---DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~~v~v---~g~~~~~d~lviAtG~~p~~p 224 (551)
-.+.. ..+.+.....+++++.+|+++.+ .+.++|.....+ .++.+.||+||+||||.|++|
T Consensus 52 ----l~~~~-----------~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 52 ----LAGEK-----------TAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred ----cCCCc-----------cHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccccc
Confidence 00001 12223333346778889999988 477787654444 788999999999999999999
Q ss_pred CCCCCC--ce---ecchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHH
Q 008839 225 DIPGSE--YA---IDSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQ 295 (551)
Q Consensus 225 ~i~g~~--~~---~~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 295 (551)
++||.+ .+ .+.++...+ .+..++.+|||+|..|+|+|..|...|.++++++-.+.++.. +|+.....|++.
T Consensus 117 PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 117 PIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRK 196 (793)
T ss_pred CCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHH
Confidence 999976 23 344554432 233556899999999999999999999999999999998865 999999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008839 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
++++|++++++...+++.. .+.+..+.++||+.+++|.||+|+|.+||.++ ...+|+++++ +|.||++|||++|+
T Consensus 197 le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpd 271 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPADLVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPD 271 (793)
T ss_pred HHhhcceeecccchhhhhc-CcceeeEeecCCCcccceeEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCC
Confidence 9999999999998888876 34457899999999999999999999999998 8899999988 79999999999999
Q ss_pred EEEeCcCCCC----CCChHHHHHhHHHHHHHHcCCCCC-CCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeec
Q 008839 376 IWAVGDVTDR----INLTPVALMEGGALAKTLFQAEPT-KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANF 450 (551)
Q Consensus 376 vya~GD~~~~----~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~ 450 (551)
|||+|+|+.. +.+...+..|++++|+++++.... +......+....+.-++.+.|--. + ..+....++.
T Consensus 272 IYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~-e--~~~~~~iv~~--- 345 (793)
T COG1251 272 IYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQ-E--TEGAESIVFR--- 345 (793)
T ss_pred eeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchh-h--cCCCceEEEe---
Confidence 9999999985 578888999999999999987653 222222222344455666666333 1 1111222221
Q ss_pred cCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC
Q 008839 451 RPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT 510 (551)
Q Consensus 451 ~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~ 510 (551)
+.....|-|+++ ++++|+|+.++|+-+. =+-|-.+|..+.+++++.+.
T Consensus 346 --------D~~~~iYKrlvL--~dd~IvgavL~GDt~d--~~~l~~li~~~~~~se~r~~ 393 (793)
T COG1251 346 --------DEQRGIYKKLVL--KDDKIVGAVLYGDTSD--GGWLLDLILKGADISEIRDT 393 (793)
T ss_pred --------cccccceeEEEE--eCCeEEEEEEEeeccc--chHHHHHHhcCCCccccchh
Confidence 233445888888 5789999999998432 14466778888888888654
No 50
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-33 Score=272.37 Aligned_cols=277 Identities=28% Similarity=0.387 Sum_probs=209.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGAS-VAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~-V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
++|||+|||||||||+||.++++.+++ ++|+| ....||..... ..+.+++.+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~----------~~~~gg~~~~~---------------~~venypg~~- 55 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILE----------GGEPGGQLTKT---------------TDVENYPGFP- 55 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEe----------cCCcCCccccc---------------eeecCCCCCc-
Confidence 469999999999999999999999998 77777 55566553321 1223333321
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC----CEEEEcCEEEEeCeEEEcCCCCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP----HTVDVDGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~----~~v~v~g~~~~~d~lviAtG~~p~~p~ 225 (551)
.......++.... +.....+++++...+..++. +.+.++..++++++||||||..++.|.
T Consensus 56 -----~~~~g~~L~~~~~-----------~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 56 -----GGILGPELMEQMK-----------EQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLG 119 (305)
T ss_pred -----cCCchHHHHHHHH-----------HHHhhcCeEEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCC
Confidence 1234445444443 33345588888876666543 345554445999999999999999998
Q ss_pred CCCCC--------ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH
Q 008839 226 IPGSE--------YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 226 i~g~~--------~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 297 (551)
+||.. ++.+++. ....++|+|||+|.+++|.|.+|.+.+.+||+++|++.+.. .+.+.+.++
T Consensus 120 ~~~e~e~~g~gv~yc~~cdg----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------~~~~~~~l~ 189 (305)
T COG0492 120 VPGEEEFEGKGVSYCATCDG----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------EEILVERLK 189 (305)
T ss_pred CCcchhhcCCceEEeeecCc----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------CHHHHHHHH
Confidence 87532 3445555 22357999999999999999999999999999999987644 344555666
Q ss_pred hc-CcEEEcCcccEEEEEcCCceEEEEECC--C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCC
Q 008839 298 LR-GIEFHTEESPQAILKSTDGSLSVKTNK--G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372 (551)
Q Consensus 298 ~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~--G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 372 (551)
++ +|++++++.+.++..++ +..|++.+ | +.+.+|.+++++|..|++++ +...++ ++++|+|.||+.++||
T Consensus 190 ~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~Ts 264 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETS 264 (305)
T ss_pred hcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcccC
Confidence 55 89999999999998865 23455544 3 26899999999999999987 556556 7899999999999999
Q ss_pred CCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHc
Q 008839 373 VPSIWAVGDVTDRI-NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 373 ~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~ 404 (551)
+|+||||||++... ++...|..+|..||.++.
T Consensus 265 vpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 265 VPGIFAAGDVADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred CCCEEEeEeeccCcccEEeehhhhHHHHHHHHH
Confidence 99999999999975 467789999999998764
No 51
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=277.74 Aligned_cols=361 Identities=25% Similarity=0.345 Sum_probs=257.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..++|||+|++|.-|+..+++.|. +++|+-..+. .|.
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~-------------------~py---------------------- 113 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL-------------------LPY---------------------- 113 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEecccc-------------------Ccc----------------------
Confidence 569999999999999999999775 6777651110 110
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec--CCEEEE-cCEEEEeCeEEEcCCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD--PHTVDV-DGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~--~~~v~v-~g~~~~~d~lviAtG~~p~~p~i 226 (551)
+...+........+.+.....+++++.+++++.+. +..+| .+++.. +|+.+.|++++||||+.++.|++
T Consensus 114 -------dr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~ 186 (478)
T KOG1336|consen 114 -------DRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDI 186 (478)
T ss_pred -------cchhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCC
Confidence 00000000000111122223346777899998874 44454 455655 89999999999999999999999
Q ss_pred CCCC--cee---cchhhh---cCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHH
Q 008839 227 PGSE--YAI---DSDAAL---DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMS 297 (551)
Q Consensus 227 ~g~~--~~~---~~~~~~---~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~ 297 (551)
||.+ .+. ..++.. ........++++|+|++|+|++..|...+.+||++++.+.+++. +.+.+.+.+.++++
T Consensus 187 pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e 266 (478)
T KOG1336|consen 187 PGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYE 266 (478)
T ss_pred CCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHH
Confidence 9975 232 222222 22234678999999999999999999999999999999999987 89999999999999
Q ss_pred hcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcE
Q 008839 298 LRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI 376 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~v 376 (551)
++||++++++.+.+++...++ ++.|.+.||++++||.|++++|.+|++.+ ++. +..++++|+|.||+.+||++|||
T Consensus 267 ~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~--~~~-g~~~~~~G~i~V~~~f~t~~~~V 343 (478)
T KOG1336|consen 267 NKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF--LEK-GILLDSKGGIKVDEFFQTSVPNV 343 (478)
T ss_pred hcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc--ccc-cceecccCCEeehhceeeccCCc
Confidence 999999999999999987754 67799999999999999999999999998 444 88889999999999999999999
Q ss_pred EEeCcCCCCC----------CChHHHHHhHHHHHHHHcCCCCCCCCCCCccE--EEecCCceEEeeCCHHHHHhcCCCeE
Q 008839 377 WAVGDVTDRI----------NLTPVALMEGGALAKTLFQAEPTKPDYSAVPS--AVFSQPPIGQVGLSEEQAIQEYGDID 444 (551)
Q Consensus 377 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~--~~~~~~~~~~vGl~~~~a~~~~~~~~ 444 (551)
||+||++..+ .++..|..+|+.++..+....... ++.+|. ..+....+-+.|.+ ..+..
T Consensus 344 yAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~--~~~lPyf~t~~f~~~~~~~G~g-------~~~~v 414 (478)
T KOG1336|consen 344 YAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA--YDYLPYFYTRFFSLSWRFAGDG-------VGDVV 414 (478)
T ss_pred ccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCccc--ccccchHHHHHhhhhccccCcC-------cccee
Confidence 9999999852 445568888886555554322222 334442 11111122222222 00111
Q ss_pred EEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHc
Q 008839 445 VFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFD 508 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~ 508 (551)
... ..+...|+..++ + +..+|+..=|.. .+..++++..++++..+..+.
T Consensus 415 ~~G-----------~~e~~~f~ay~~--k-~~~v~a~~~~g~-~~~~~~~a~l~~~~~~v~~~~ 463 (478)
T KOG1336|consen 415 LFG-----------DLEPGSFGAYWI--K-GDKVGAVAEGGR-DEEVSQFAKLARQGPEVTSLK 463 (478)
T ss_pred eec-----------ccccccceeeEe--e-ccEEEEEeccCC-ChHHHHHHHHHhcCCcchhhh
Confidence 110 123334777777 4 778888776543 378899999999998877643
No 52
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.5e-33 Score=290.56 Aligned_cols=276 Identities=25% Similarity=0.336 Sum_probs=203.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||..|++.|++|+|+|+ ...+||.+.+ | +|. | .
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~-g-ip~------------------~--~ 187 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEA---------LHEPGGVLVY-G-IPE------------------F--R 187 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEec---------CCCCCCeeee-c-CCC------------------c--c
Confidence 468999999999999999999999999999993 4557887642 1 110 0 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcC--EEEEeCeEEEcCCC-CCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDG--KLYSARHILISVGG-RPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g--~~~~~d~lviAtG~-~p~~p~i~ 227 (551)
.....+. ....+.+++.|++++.++.. ...+.+++ +.+.||+|+||||+ .|+.+++|
T Consensus 188 ------l~~~~~~-----------~~~~~~~~~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ip 247 (464)
T PRK12831 188 ------LPKETVV-----------KKEIENIKKLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIP 247 (464)
T ss_pred ------CCccHHH-----------HHHHHHHHHcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCC
Confidence 0001111 11123456679998887522 12233322 34579999999998 68889999
Q ss_pred CCC--ceecchhhhcC--------------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-cCCCCCHHHHH
Q 008839 228 GSE--YAIDSDAALDL--------------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-VLRGFDEDIRD 290 (551)
Q Consensus 228 g~~--~~~~~~~~~~~--------------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~~ 290 (551)
|.+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++.+.+. -++... .
T Consensus 248 G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~----~ 323 (464)
T PRK12831 248 GENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARV----E 323 (464)
T ss_pred CcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCH----H
Confidence 965 46665555421 13578999999999999999999999999999998653 122111 1
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC------------------CCe--EEEeeEEEEecCcCCCCCCCC
Q 008839 291 FVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN------------------KGT--VDGFSHVMFATGRRPNTKNLG 349 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~------------------~G~--~i~~d~vi~a~G~~p~~~~l~ 349 (551)
.+ +.+++.||++++++.+.++..++++ ...|++. +|+ ++++|.||+|+|..|++.+
T Consensus 324 e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~-- 400 (464)
T PRK12831 324 EV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI-- 400 (464)
T ss_pred HH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhh--
Confidence 12 3456789999999999999865443 2223321 222 5999999999999999876
Q ss_pred ccc-cCeeecCCCCeEeCCC-CCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 350 LEK-VGVKMTKNGAIEVDEY-SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 350 l~~-~gl~~~~~G~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+.. .+++++++|+|.||++ ++|+.|+|||+|||+..+.++..|+.+|+.||.+|.
T Consensus 401 ~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 401 SSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred hcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 444 6888888899999998 999999999999999988888999999999999875
No 53
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=4.8e-33 Score=285.68 Aligned_cols=275 Identities=21% Similarity=0.300 Sum_probs=206.6
Q ss_pred cEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 74 DLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+|||||||+||+.+|.+|++ .+.+|+|||+ ... .....+.|. +
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~----------~~~---~~~~~~~~~--------------------~- 46 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINP----------SST---TPYSGMLPG--------------------M- 46 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECC----------CCC---CcccchhhH--------------------H-
Confidence 48999999999999999974 4689999992 110 000011110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
.. ...+..+ +.....+++++.+++++.+++..+|. +.+.+ ++++++||+||||||++|..|++|
T Consensus 47 ~~--g~~~~~~-----------~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~ 113 (364)
T TIGR03169 47 IA--GHYSLDE-----------IRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE 113 (364)
T ss_pred Hh--eeCCHHH-----------hcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCC
Confidence 00 0011111 11122344566799999999988875 44555 667899999999999999999999
Q ss_pred CCC-cee---cchhhh-------c-C--CCCCCeEEEEcCcHHHHHHHHHHHh----CC--CeEEEEeecCccCCCCCHH
Q 008839 228 GSE-YAI---DSDAAL-------D-L--PSKPEKIAIVGGGYIALEFAGIFSG----LT--SEVHVFIRQKKVLRGFDED 287 (551)
Q Consensus 228 g~~-~~~---~~~~~~-------~-~--~~~~~~vvViG~G~~g~e~a~~l~~----~g--~~Vtlv~~~~~~l~~~~~~ 287 (551)
|.. .++ +.+++. . . ....++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++.++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~ 192 (364)
T TIGR03169 114 GAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAK 192 (364)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHH
Confidence 842 222 222211 1 1 1235799999999999999999875 34 589999 667777778899
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
+.+.+.+.|++.||+++.++.+++++.+ .+.+.+|+++++|.||+|+|.+|+.. +...++.++++|+|.||+
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd~ 264 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPDG-----ALILADGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDP 264 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcCC-----eEEeCCCCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEECC
Confidence 9999999999999999999999988532 36778888999999999999999864 455678888889999999
Q ss_pred CCCC-CCCcEEEeCcCCCC-----CCChHHHHHhHHHHHHHHc
Q 008839 368 YSGT-AVPSIWAVGDVTDR-----INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 368 ~~~t-~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 404 (551)
++|| ++|||||+|||+.. ++.+..|+.||+++|+||.
T Consensus 265 ~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 265 TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 9998 99999999999963 3567789999999999986
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.6e-32 Score=291.35 Aligned_cols=282 Identities=21% Similarity=0.332 Sum_probs=208.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..|||+||||||||++||.+|++.|++|+||+ . .+||+|...--++ ++.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~----------~-~~GG~~~~~~~~~---------------~~~----- 258 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVA----------E-RFGGQVLDTMGIE---------------NFI----- 258 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------c-CCCCeeeccCccc---------------ccC-----
Confidence 46999999999999999999999999999998 3 3888875211010 111
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC----CEEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP----HTVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~----~~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
+.+...+.++.. .+.+.+++.++++..+ ++..++. +.+.+ ++..+.||.+|+|||++|+.|
T Consensus 259 --~~~~~~~~~l~~-----------~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 259 --SVPETEGPKLAA-----------ALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred --CCCCCCHHHHHH-----------HHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 011233443332 2334455668888765 4555543 23444 566899999999999999999
Q ss_pred CCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh-
Q 008839 225 DIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL- 298 (551)
Q Consensus 225 ~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~- 298 (551)
++||.+. ++...........+++|+|||+|++|+|+|..|+..+.+|+++++.+.+.. .+.+.+.+.+
T Consensus 326 ~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------~~~l~~~l~~~ 399 (517)
T PRK15317 326 NVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------DQVLQDKLRSL 399 (517)
T ss_pred CCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------cHHHHHHHhcC
Confidence 9998532 111111111122468999999999999999999999999999999876532 2345555665
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEEC---CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCC
Q 008839 299 RGIEFHTEESPQAILKSTDGSLSVKTN---KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAV 373 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~ 373 (551)
.||++++++.++++..+++....+.+. +| +++++|.|++++|+.|++++ ++.. ++++++|+|.||+++||++
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~--l~~~-v~~~~~g~i~vd~~l~Ts~ 476 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW--LKGT-VELNRRGEIIVDARGATSV 476 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchH--Hhhh-eeeCCCCcEEECcCCCCCC
Confidence 599999999999998765443345543 33 35999999999999999987 4444 7888889999999999999
Q ss_pred CcEEEeCcCCCCC-CChHHHHHhHHHHHHHHcC
Q 008839 374 PSIWAVGDVTDRI-NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 374 ~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~g 405 (551)
|+|||+|||+..+ +....|+.+|..||.+++.
T Consensus 477 p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 477 PGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred CCEEECccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence 9999999999864 7788999999999998864
No 55
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2.3e-31 Score=280.41 Aligned_cols=276 Identities=22% Similarity=0.297 Sum_probs=201.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..++|+|||||++|+++|..|++.|++|+|+|+ ...+||.+.. + +|. +
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~---------~~~~gG~l~~-g-ip~------------------~--- 186 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEA---------RDKAGGLLRY-G-IPE------------------F--- 186 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc---------CCCCCcEeec-c-CCC------------------c---
Confidence 357999999999999999999999999999993 4456666431 1 110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
. ...++ .......+.+.++++..+... ...+.+++..+.||+||+|||+. |..+++||.
T Consensus 187 -----~-~~~~~-----------~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~ 246 (457)
T PRK11749 187 -----R-LPKDI-----------VDREVERLLKLGVEIRTNTEV---GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGE 246 (457)
T ss_pred -----c-CCHHH-----------HHHHHHHHHHcCCEEEeCCEE---CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCc
Confidence 0 00111 112223456678999887543 12223322237899999999985 777788886
Q ss_pred C--ceecchhhhcC-------C--CCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCc-cCCCCCHHHHHHHHHHH
Q 008839 230 E--YAIDSDAALDL-------P--SKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKK-VLRGFDEDIRDFVAEQM 296 (551)
Q Consensus 230 ~--~~~~~~~~~~~-------~--~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~l~~~l 296 (551)
+ .+++..+++.. . ..+++|+|||+|.+|+|+|..+.+.|. +|+++.+.+. .++.. ....+.+
T Consensus 247 ~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~-----~~~~~~~ 321 (457)
T PRK11749 247 NLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS-----EEEVEHA 321 (457)
T ss_pred cCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC-----HHHHHHH
Confidence 4 24444333221 1 247899999999999999999999998 8999998654 23322 2235667
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEE-------------------CCCeEEEeeEEEEecCcCCCCCCCCccccCeee
Q 008839 297 SLRGIEFHTEESPQAILKSTDGSLSVKT-------------------NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKM 357 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-------------------~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~ 357 (551)
++.||++++++.+.++..++++...|++ .+++++++|.||+|+|..|+..++ ....++.+
T Consensus 322 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~ 400 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLEL 400 (457)
T ss_pred HHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccC
Confidence 8899999999999999876543222322 123479999999999999997753 23567888
Q ss_pred cCCCCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 358 TKNGAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 358 ~~~G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+++|+|.||+ +++|+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 401 ~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 401 NRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred CCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 8899999998 8899999999999999877888899999999999875
No 56
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=3.4e-31 Score=291.05 Aligned_cols=274 Identities=22% Similarity=0.314 Sum_probs=201.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+||||||||++||..|++.|++|+|+|+ ...+||.+.+ .+|. | .
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek---------~~~~GG~lr~--~IP~------------------~--R 586 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFER---------EENAGGVVKN--IIPQ------------------F--R 586 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEec---------ccccCcceee--eccc------------------c--c
Confidence 357999999999999999999999999999993 4557887643 1331 0 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCC-CCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRP-FIPDIPG 228 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p-~~p~i~g 228 (551)
.. .++. ....+.+.+.|+++..+... .+.+ +.+...||+||||||+++ ..++++|
T Consensus 587 ------lp-~evL-----------~~die~l~~~GVe~~~gt~V-----di~le~L~~~gYDaVILATGA~~~~~l~IpG 643 (1019)
T PRK09853 587 ------IP-AELI-----------QHDIEFVKAHGVKFEFGCSP-----DLTVEQLKNEGYDYVVVAIGADKNGGLKLEG 643 (1019)
T ss_pred ------cc-HHHH-----------HHHHHHHHHcCCEEEeCcee-----EEEhhhheeccCCEEEECcCCCCCCCCCCCC
Confidence 00 1111 11123455679999887533 1233 234556999999999874 4557887
Q ss_pred CC-ceecchhhhc-------CCCCCCeEEEEcCcHHHHHHHHHHHhC-C-CeEEEEeecC-ccCCCCCHHHHHHHHHHHH
Q 008839 229 SE-YAIDSDAALD-------LPSKPEKIAIVGGGYIALEFAGIFSGL-T-SEVHVFIRQK-KVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 229 ~~-~~~~~~~~~~-------~~~~~~~vvViG~G~~g~e~a~~l~~~-g-~~Vtlv~~~~-~~l~~~~~~~~~~l~~~l~ 297 (551)
.+ .+++..+++. ....+++|+|||+|++|+|+|..+.+. | .+|+++.|++ ..++..+++ +.+.+
T Consensus 644 ~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eE----le~Al- 718 (1019)
T PRK09853 644 GNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREE----YEEAL- 718 (1019)
T ss_pred ccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHH----HHHHH-
Confidence 54 3444333332 123578999999999999999998887 4 4899999876 344444333 33333
Q ss_pred hcCcEEEcCcccEEEEEcCCceEE-----------------EEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCC
Q 008839 298 LRGIEFHTEESPQAILKSTDGSLS-----------------VKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~-----------------V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~ 360 (551)
+.||++++++.+.++..+ +. +. +...++.++++|.||+|+|..|++++ ++..|++++++
T Consensus 719 eeGVe~~~~~~p~~I~~d-G~-l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld~~ 794 (1019)
T PRK09853 719 EDGVEFKELLNPESFDAD-GT-LTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKK 794 (1019)
T ss_pred HcCCEEEeCCceEEEEcC-Cc-EEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH--HHhcCccccCC
Confidence 479999999988888632 21 21 22233457999999999999999987 57788988888
Q ss_pred CCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC
Q 008839 361 GAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 361 G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
|++.||++++|+.|+|||+|||+..+.++..|+.||+.||.+|.+..
T Consensus 795 G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 795 GWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999888889999999999999998643
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=1.5e-30 Score=289.32 Aligned_cols=274 Identities=24% Similarity=0.333 Sum_probs=202.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||..|++.|++|+|||+ ...+||...+ | +|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~-g-ip----------------------- 475 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEA---------LHEIGGVLKY-G-IP----------------------- 475 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCeeee-c-CC-----------------------
Confidence 457999999999999999999999999999993 3557777432 1 22
Q ss_pred cCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCC-CCCCCCCC
Q 008839 151 YGTEPQHDWS-TLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGG-RPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~-~p~~p~i~ 227 (551)
.+.++ .+.. ...+.+.+.|+++..+... ...+.+ +.....||+||||||+ .|+.+++|
T Consensus 476 -----~~rlp~~~~~-----------~~~~~l~~~gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ip 536 (752)
T PRK12778 476 -----EFRLPKKIVD-----------VEIENLKKLGVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPNFMNIP 536 (752)
T ss_pred -----CCCCCHHHHH-----------HHHHHHHHCCCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCC
Confidence 11111 1111 1123456679999876432 233334 2345679999999998 58888999
Q ss_pred CCC--ceecchhhhcC--------------CCCCCeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCc-cCCCCCHHHH
Q 008839 228 GSE--YAIDSDAALDL--------------PSKPEKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKK-VLRGFDEDIR 289 (551)
Q Consensus 228 g~~--~~~~~~~~~~~--------------~~~~~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~-~l~~~~~~~~ 289 (551)
|.+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+ |+++.+.+. .++....+
T Consensus 537 G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e-- 614 (752)
T PRK12778 537 GENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEE-- 614 (752)
T ss_pred CCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHH--
Confidence 865 45655554321 12468999999999999999999999997 999998754 22322111
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC---------CC-----------eEEEeeEEEEecCcCCCCCCC
Q 008839 290 DFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN---------KG-----------TVDGFSHVMFATGRRPNTKNL 348 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~---------~G-----------~~i~~d~vi~a~G~~p~~~~l 348 (551)
.+.+++.||++++++.+.++..++++ ...|.+. +| .++++|.||+|+|+.|+..+
T Consensus 615 ---~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l- 690 (752)
T PRK12778 615 ---VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLV- 690 (752)
T ss_pred ---HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccc-
Confidence 23467889999999999999765544 2233331 22 25899999999999999875
Q ss_pred Cccc-cCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 349 GLEK-VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 349 ~l~~-~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+.. .+++++++|+|.||++++|+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 691 -~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 691 -PSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred -cccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 333 4788888899999999999999999999999888888999999999999985
No 58
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=3.5e-30 Score=262.55 Aligned_cols=278 Identities=22% Similarity=0.285 Sum_probs=197.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
..+|+|||+|++|+++|..|++.|++|++||+ ...+||..... ++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gg~~~~~--~~------------------------ 62 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDK---------LPEPGGLMLFG--IP------------------------ 62 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeC---------CCCCCceeeec--Cc------------------------
Confidence 36899999999999999999999999999993 34566653210 00
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec-C------CE--E---EEcCEEEEeCeEEEcCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD-P------HT--V---DVDGKLYSARHILISVGG 219 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~-~------~~--v---~v~g~~~~~d~lviAtG~ 219 (551)
....+.+. +.... ..+.+.+++++.+.....+ . .. . ..++..+.||+||||||+
T Consensus 63 --~~~~~~~~-----------~~~~~-~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 63 --EFRIPIER-----------VREGV-KELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred --ccccCHHH-----------HHHHH-HHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
Confidence 00001111 11111 1234458888777433221 1 00 1 112224689999999999
Q ss_pred -CCCCCCCCCCC--ceecchhhh-----------cCCC----CCCeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCcc
Q 008839 220 -RPFIPDIPGSE--YAIDSDAAL-----------DLPS----KPEKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKV 280 (551)
Q Consensus 220 -~p~~p~i~g~~--~~~~~~~~~-----------~~~~----~~~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~ 280 (551)
.|..|++||.+ .+++..+.. .... .+++++|||+|++|+|+|..|.+.|.+ |+++++.+..
T Consensus 129 ~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~ 208 (352)
T PRK12770 129 WKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTIN 208 (352)
T ss_pred CCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchh
Confidence 57888899864 244432221 1111 147999999999999999999999987 9999987642
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--------------------CCCeEEEeeEEEEecC
Q 008839 281 LRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--------------------NKGTVDGFSHVMFATG 340 (551)
Q Consensus 281 l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--------------------~~G~~i~~d~vi~a~G 340 (551)
.. .......+.|+++||++++++.+.+++.++ +...|++ .+++++++|.||+++|
T Consensus 209 ~~----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G 283 (352)
T PRK12770 209 EA----PAGKYEIERLIARGVEFLELVTPVRIIGEG-RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG 283 (352)
T ss_pred hC----CCCHHHHHHHHHcCCEEeeccCceeeecCC-cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc
Confidence 11 112344566899999999999999997653 2223332 1234799999999999
Q ss_pred cCCCCCCCCccc-cCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcC
Q 008839 341 RRPNTKNLGLEK-VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 341 ~~p~~~~l~l~~-~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g 405 (551)
++|++.+ ... .+++++++|++.||++++|+.|+|||+|||+..+.....|+.||+.+|.+|..
T Consensus 284 ~~p~~~l--~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 284 EIPTPPF--AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cCCCchh--hhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 9999876 333 78888888999999999999999999999999888899999999999999863
No 59
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=8e-30 Score=281.86 Aligned_cols=273 Identities=21% Similarity=0.308 Sum_probs=197.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||+.|++.|++|+|+|+ ...+||.+.+. +|. |
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek---------~~~lGG~l~~~--IP~------------------~--- 583 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEK---------KEKPGGVVKNI--IPE------------------F--- 583 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEec---------ccccCceeeec--ccc------------------c---
Confidence 358999999999999999999999999999993 45678886431 231 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCC-CCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRP-FIPDIPG 228 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p-~~p~i~g 228 (551)
... .+... ...+.+.+.||+++.+.. ..+.+ +.+...||+|+||||+.+ ..++++|
T Consensus 584 -----rlp-~e~l~-----------~~ie~l~~~GVe~~~g~~-----~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G 641 (1012)
T TIGR03315 584 -----RIS-AESIQ-----------KDIELVKFHGVEFKYGCS-----PDLTVAELKNQGYKYVILAIGAWKHGPLRLEG 641 (1012)
T ss_pred -----CCC-HHHHH-----------HHHHHHHhcCcEEEEecc-----cceEhhhhhcccccEEEECCCCCCCCCCCcCC
Confidence 000 11111 112345566999887631 11223 223457999999999875 4456777
Q ss_pred CC-ceecchhhhc-------CCCCCCeEEEEcCcHHHHHHHHHHHhC-CC-eEEEEeecC-ccCCCCCHHHHHHHHHHHH
Q 008839 229 SE-YAIDSDAALD-------LPSKPEKIAIVGGGYIALEFAGIFSGL-TS-EVHVFIRQK-KVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 229 ~~-~~~~~~~~~~-------~~~~~~~vvViG~G~~g~e~a~~l~~~-g~-~Vtlv~~~~-~~l~~~~~~~~~~l~~~l~ 297 (551)
.. .+++..+++. ....+++|+|||+|++|+|+|..+.+. |. +|+++.+.. ..++..+++ +.+.+
T Consensus 642 ~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eE----l~~al- 716 (1012)
T TIGR03315 642 GGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREE----LEEAL- 716 (1012)
T ss_pred CCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHH----HHHHH-
Confidence 43 3444433332 123589999999999999999998876 75 899999876 334444433 33333
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEE---------------ECCCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCC
Q 008839 298 LRGIEFHTEESPQAILKSTDGSLSVK---------------TNKGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~---------------~~~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~ 360 (551)
+.||+++++..+.++. +++ +.+. ..+|+ ++++|.||+|+|..|++++ ++..+++++++
T Consensus 717 eeGVe~~~~~~p~~I~--~g~-l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld~~ 791 (1012)
T TIGR03315 717 EDGVDFKELLSPESFE--DGT-LTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEY 791 (1012)
T ss_pred HcCCEEEeCCceEEEE--CCe-EEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH--HHhcCcccCCC
Confidence 5799999998888886 222 2211 11233 6899999999999999987 57788999999
Q ss_pred CCeEeCCC-CCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC
Q 008839 361 GAIEVDEY-SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 361 G~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
|++.||++ ++|+.|+|||+|||+..+.++..|+.||+.||.+|++..
T Consensus 792 G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 792 GWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 99999986 899999999999999888889999999999999998653
No 60
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=7.3e-30 Score=269.48 Aligned_cols=281 Identities=19% Similarity=0.249 Sum_probs=197.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+|||||+||+++|..|++.|++|+|||+ ...+||.+.. | +|. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~---------~~~~GG~l~~-g-ip~--------------------~- 189 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFER---------ADRIGGLLRY-G-IPD--------------------F- 189 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEec---------CCCCCceeee-c-CCc--------------------c-
Confidence 357999999999999999999999999999993 4456776431 1 220 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
... ..+. ....+.+.+.|++++.++....+ +..+.....||+|++|||+. +..+++||.
T Consensus 190 -----~~~-~~~~-----------~~~~~~~~~~gv~~~~~~~v~~~---~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~ 249 (471)
T PRK12810 190 -----KLE-KEVI-----------DRRIELMEAEGIEFRTNVEVGKD---ITAEELLAEYDAVFLGTGAYKPRDLGIPGR 249 (471)
T ss_pred -----cCC-HHHH-----------HHHHHHHHhCCcEEEeCCEECCc---CCHHHHHhhCCEEEEecCCCCCCcCCCCCc
Confidence 000 1111 11123456679999887543221 11122235799999999997 777888886
Q ss_pred C--ceecchhhh--------c------CCCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccCCCC-CH----H
Q 008839 230 E--YAIDSDAAL--------D------LPSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVLRGF-DE----D 287 (551)
Q Consensus 230 ~--~~~~~~~~~--------~------~~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l~~~-~~----~ 287 (551)
+ .+++..+++ . ....+++|+|||+|++|+|+|..+.+.|. +|++++..+...... +. .
T Consensus 250 ~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~ 329 (471)
T PRK12810 250 DLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPY 329 (471)
T ss_pred cCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcc
Confidence 4 344322211 0 12357899999999999999998888886 788666544221111 00 0
Q ss_pred HH-HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-----CCC---------eEEEeeEEEEecCcCCCCCCCCccc
Q 008839 288 IR-DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-----NKG---------TVDGFSHVMFATGRRPNTKNLGLEK 352 (551)
Q Consensus 288 ~~-~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-----~~G---------~~i~~d~vi~a~G~~p~~~~l~l~~ 352 (551)
+. ....+.+++.||++++++.+++|..+++....|++ .+| +++++|.||+|+|..|+...+ ++.
T Consensus 330 ~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~ 408 (471)
T PRK12810 330 WPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQ 408 (471)
T ss_pred cchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-ccc
Confidence 11 11345677889999999999999764444333332 222 479999999999999986422 677
Q ss_pred cCeeecCCCCeEeC-CCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 353 VGVKMTKNGAIEVD-EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 353 ~gl~~~~~G~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
.+++++++|.+.+| ++++|+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 409 ~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~ 461 (471)
T PRK12810 409 FGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 461 (471)
T ss_pred cCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHH
Confidence 78889989999998 79999999999999999988788899999999999875
No 61
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=1.2e-29 Score=283.60 Aligned_cols=276 Identities=20% Similarity=0.267 Sum_probs=201.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||||||||+||..|++.|++|+|||+ ...+||... +| +|. +
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~---------~~~~GG~l~-yG-IP~--------------------~- 352 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA---------FHDLGGVLR-YG-IPE--------------------F- 352 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEee---------CCCCCceEE-cc-CCC--------------------C-
Confidence 358999999999999999999999999999993 456888753 22 331 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCC-CCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGG-RPFIPDIPG 228 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~-~p~~p~i~g 228 (551)
. ...++..+ ..+.+++.|+++..+... ...+.+ +.....||+|+||||+ .|+.+++||
T Consensus 353 -----r-lp~~vi~~-----------~i~~l~~~Gv~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG 412 (944)
T PRK12779 353 -----R-LPNQLIDD-----------VVEKIKLLGGRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPG 412 (944)
T ss_pred -----c-ChHHHHHH-----------HHHHHHhhcCeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCCCCCcCCCCC
Confidence 0 01122211 123455669999887532 133444 3344679999999998 588889998
Q ss_pred CC--ceecchhhhcC----------------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-cCCCCCHHHH
Q 008839 229 SE--YAIDSDAALDL----------------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-VLRGFDEDIR 289 (551)
Q Consensus 229 ~~--~~~~~~~~~~~----------------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~ 289 (551)
.+ .+++..+++.. ...+++|+|||+|.+|+++|..+.++|++|+++.+.+. .++. ..
T Consensus 413 ~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa----~~ 488 (944)
T PRK12779 413 EHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA----RV 488 (944)
T ss_pred CcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc----cH
Confidence 64 45555554421 11468999999999999999999999999999998753 2222 22
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCC-c-eEEEEE---------C--------CC--eEEEeeEEEEecCcCCCCCCC
Q 008839 290 DFVAEQMSLRGIEFHTEESPQAILKSTD-G-SLSVKT---------N--------KG--TVDGFSHVMFATGRRPNTKNL 348 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~~V~~---------~--------~G--~~i~~d~vi~a~G~~p~~~~l 348 (551)
..+.+ ..+.||++++++.++++..+++ + +..+.+ . +| .+++||.||+|+|+.|+..+.
T Consensus 489 ~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~ 567 (944)
T PRK12779 489 EELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK 567 (944)
T ss_pred HHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh
Confidence 23333 3467999999999999976532 2 222221 1 22 358999999999999987532
Q ss_pred CccccCeeecCCCCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 349 GLEKVGVKMTKNGAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 349 ~l~~~gl~~~~~G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
....+++++++|.|.||+ +++|+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 568 -~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 568 -DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred -hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHH
Confidence 344578889999999997 5899999999999999988888999999999999885
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=3.6e-29 Score=272.92 Aligned_cols=274 Identities=22% Similarity=0.314 Sum_probs=198.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..++|+|||||+||+++|..|++.|++|+|||+ ...+||.+.. | +|. | .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~---------~~~~GG~l~~-g-ip~------------------~--~ 240 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDA---------NEQAGGMMRY-G-IPR------------------F--R 240 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEec---------CCCCCceeee-c-CCC------------------C--C
Confidence 357999999999999999999999999999993 4557887532 1 110 0 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g~ 229 (551)
....+.. ...+.+.+.|+++..+..... .+.++.....||+|++|||+.+ ..+++||.
T Consensus 241 -------~~~~~~~-----------~~~~~l~~~Gv~i~~~~~v~~---dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~ 299 (652)
T PRK12814 241 -------LPESVID-----------ADIAPLRAMGAEFRFNTVFGR---DITLEELQKEFDAVLLAVGAQKASKMGIPGE 299 (652)
T ss_pred -------CCHHHHH-----------HHHHHHHHcCCEEEeCCcccC---ccCHHHHHhhcCEEEEEcCCCCCCCCCCCCc
Confidence 0111111 112334566898877653211 1222222235999999999985 46778886
Q ss_pred C--ceecchhhhc------CCCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCc-cCCCCCHHHHHHHHHHHHhc
Q 008839 230 E--YAIDSDAALD------LPSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKK-VLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 230 ~--~~~~~~~~~~------~~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~l~~~l~~~ 299 (551)
+ .+++..+++. ....+++|+|||+|++|+|+|..+.++|. +|+++.+.+. .++..+.+ +.+. .+.
T Consensus 300 ~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~e----i~~a-~~e 374 (652)
T PRK12814 300 ELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAE----IEEA-LAE 374 (652)
T ss_pred CcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHH----HHHH-HHc
Confidence 4 3444444432 12357899999999999999999999986 6999998764 34433333 3333 357
Q ss_pred CcEEEcCcccEEEEEcCCceEEEE---EC---------------CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecC
Q 008839 300 GIEFHTEESPQAILKSTDGSLSVK---TN---------------KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~---~~---------------~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~ 359 (551)
||++++++.+.++..++++ +.++ +. +|+ .+++|.||+|+|..|++.+ ++..+++++.
T Consensus 375 GV~i~~~~~~~~i~~~~~~-~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~~ 451 (652)
T PRK12814 375 GVSLRELAAPVSIERSEGG-LELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSR 451 (652)
T ss_pred CCcEEeccCcEEEEecCCe-EEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc--ccccCccccC
Confidence 9999999999999875544 2221 11 222 5899999999999999987 5677888888
Q ss_pred CCCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 360 NGAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 360 ~G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+|+|.||+ +++|+.|+|||+||++..+.++..|+.||+.||.+|.
T Consensus 452 ~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 452 NGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred CCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 89999997 6899999999999999888888999999999999874
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=277.84 Aligned_cols=277 Identities=21% Similarity=0.288 Sum_probs=197.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+|||||||||+||..|++.|++|+|+|+ ...+||... .| +|. |
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~---------~~~~GG~l~-~g-ip~------------------~--- 476 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEA---------LHVVGGVLQ-YG-IPS------------------F--- 476 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEec---------CCCCcceee-cc-CCc------------------c---
Confidence 357999999999999999999999999999993 445676532 11 221 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcC--EEEEeCeEEEcCCCC-CCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDG--KLYSARHILISVGGR-PFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g--~~~~~d~lviAtG~~-p~~p~i~ 227 (551)
....++.. ...+.+.+.||++..+... + ..+.++. ....||+||||||+. |+.+++|
T Consensus 477 ------rl~~e~~~-----------~~~~~l~~~Gv~~~~~~~v--g-~~~~~~~l~~~~~yDaViIATGa~~pr~l~Ip 536 (1006)
T PRK12775 477 ------RLPRDIID-----------REVQRLVDIGVKIETNKVI--G-KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIP 536 (1006)
T ss_pred ------CCCHHHHH-----------HHHHHHHHCCCEEEeCCcc--C-CccCHHHHhhccCCCEEEEecCCCCCCCCCCC
Confidence 00111111 1223456679999887432 1 2222211 134699999999984 8889999
Q ss_pred CCC--ceecchhhhcC---------------CCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccCCCCCHHHH
Q 008839 228 GSE--YAIDSDAALDL---------------PSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVLRGFDEDIR 289 (551)
Q Consensus 228 g~~--~~~~~~~~~~~---------------~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~ 289 (551)
|.+ .+++..+++.. ...+++|+|||+|++|+++|..+.++|. .|+++.+....- .+..
T Consensus 537 G~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e--m~a~-- 612 (1006)
T PRK12775 537 GEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE--APAR-- 612 (1006)
T ss_pred CcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc--CCCC--
Confidence 953 45655544321 1257899999999999999999999998 488887754311 1111
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC-----------------CC--eEEEeeEEEEecCcCCCCCCCC
Q 008839 290 DFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN-----------------KG--TVDGFSHVMFATGRRPNTKNLG 349 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~-----------------~G--~~i~~d~vi~a~G~~p~~~~l~ 349 (551)
..-.+.+++.||++++++.+.++..++++ +..|++. +| .++++|.||+|+|..|+..++
T Consensus 613 ~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~- 691 (1006)
T PRK12775 613 IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT- 691 (1006)
T ss_pred HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh-
Confidence 11124577889999999999999765443 2233321 12 259999999999999998753
Q ss_pred ccccCeeecCCCCeEeCC-----CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 350 LEKVGVKMTKNGAIEVDE-----YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 350 l~~~gl~~~~~G~i~vd~-----~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
....++.++++|.|.+|+ +++||+|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 692 ~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 692 QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 223478888889999996 7899999999999999988888999999999999874
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=4.3e-28 Score=255.09 Aligned_cols=276 Identities=22% Similarity=0.315 Sum_probs=196.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||||++|+++|..|++.|++|+|+|+ ...+||.... | +|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~---------~~~~gG~l~~-g-ip~~--------------------- 187 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDR---------HPEIGGLLTF-G-IPSF--------------------- 187 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEec---------CCCCCceeee-c-Cccc---------------------
Confidence 357999999999999999999999999999993 4557776432 2 2210
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCC-CCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPF-IPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~-~p~i~g~ 229 (551)
..+ .++ .....+.+.+.|++++.+... + ..+.+++....||.||+|||+.+. .+++||.
T Consensus 188 -----~~~-~~~-----------~~~~~~~~~~~Gv~~~~~~~v--~-~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~ 247 (467)
T TIGR01318 188 -----KLD-KAV-----------LSRRREIFTAMGIEFHLNCEV--G-RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGE 247 (467)
T ss_pred -----cCC-HHH-----------HHHHHHHHHHCCCEEECCCEe--C-CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCc
Confidence 000 111 112234566779998776422 1 112222223479999999999874 4578885
Q ss_pred C--ceecchhh--------hcC---------CCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc-CCCCCHHH
Q 008839 230 E--YAIDSDAA--------LDL---------PSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV-LRGFDEDI 288 (551)
Q Consensus 230 ~--~~~~~~~~--------~~~---------~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~ 288 (551)
+ .+++..++ ..+ ....++++|||+|.+|++.|..+.++|. +||++.+.+.. ++..+.+
T Consensus 248 ~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e- 326 (467)
T TIGR01318 248 DAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRRE- 326 (467)
T ss_pred CCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHH-
Confidence 4 23332111 111 1246899999999999999999999995 79999987653 3433322
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC---------CC-----------eEEEeeEEEEecCcCCCCCC
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN---------KG-----------TVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~---------~G-----------~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.+++.||++++++.+.++..++++ ...|++. +| .++++|.||+|+|+.|+...
T Consensus 327 ----~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~ 402 (467)
T TIGR01318 327 ----VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMP 402 (467)
T ss_pred ----HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccc
Confidence 24567889999999999999765433 2223321 12 36899999999999998532
Q ss_pred CCccccCeeecCCCCeEeC----CCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 348 LGLEKVGVKMTKNGAIEVD----EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd----~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+ ++..+++++++|++.|| ++++|+.|+|||+|||+..+.++..|+.+|+.||.+|.
T Consensus 403 ~-~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 403 W-LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred c-ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 2 56778888888999999 68899999999999999988888899999999999985
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=1e-27 Score=262.71 Aligned_cols=276 Identities=22% Similarity=0.337 Sum_probs=195.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||||||||++|..|++.|++|+|+|+ ...+||.+.+ | +|. +
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~---------~~~~GG~l~~-g-ip~--------------------~- 373 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDR---------HPEIGGLLTF-G-IPA--------------------F- 373 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCceeee-c-CCC--------------------c-
Confidence 357999999999999999999999999999993 4567777532 1 221 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g~ 229 (551)
..+ .++. ....+.+++.|+++..+.... ..+.+......||.|++|||+.. ..++++|.
T Consensus 374 -----~l~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~---~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~ 433 (654)
T PRK12769 374 -----KLD-KSLL-----------ARRREIFSAMGIEFELNCEVG---KDISLESLLEDYDAVFVGVGTYRSMKAGLPNE 433 (654)
T ss_pred -----cCC-HHHH-----------HHHHHHHHHCCeEEECCCEeC---CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCC
Confidence 000 1111 112234566789887754221 11122111246999999999864 45667775
Q ss_pred C--ceecch--------hhhcC---------CCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc-CCCCCHHH
Q 008839 230 E--YAIDSD--------AALDL---------PSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV-LRGFDEDI 288 (551)
Q Consensus 230 ~--~~~~~~--------~~~~~---------~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~ 288 (551)
+ .+++.. +...+ ...+++|+|||+|.+|+++|..+.++|. +|+++.+.+.. ++..+.
T Consensus 434 ~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~-- 511 (654)
T PRK12769 434 DAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK-- 511 (654)
T ss_pred CCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH--
Confidence 3 233211 11111 1236799999999999999999889986 79999987653 333322
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEE---------CCC---------e--EEEeeEEEEecCcCCCCCC
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKT---------NKG---------T--VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~---------~~G---------~--~i~~d~vi~a~G~~p~~~~ 347 (551)
..+.+++.||++++++.++++..++++ ...|++ .+| + ++++|.||+|+|+.|+...
T Consensus 512 ---e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~ 588 (654)
T PRK12769 512 ---EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMP 588 (654)
T ss_pred ---HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccc
Confidence 235578899999999999999764433 223332 122 2 5999999999999998642
Q ss_pred CCccccCeeecCCCCeEeCC----CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 348 LGLEKVGVKMTKNGAIEVDE----YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd~----~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+ ++..+++++++|.|.||+ +++|++|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 589 ~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 589 W-LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred c-ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 2 677789999999999996 4899999999999999988888999999999999985
No 66
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=1.9e-27 Score=251.20 Aligned_cols=279 Identities=22% Similarity=0.291 Sum_probs=191.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
.++|+|||||++|+++|..|++.|++|+|+|+ ...+||.+.+ | +|. +
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~---------~~~~gG~l~~-g-ip~------------------~---- 189 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFER---------EDRCGGLLMY-G-IPN------------------M---- 189 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEec---------CCCCCceeec-c-CCC------------------c----
Confidence 47999999999999999999999999999993 3456666431 1 120 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGSE 230 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~~ 230 (551)
..+ ..+. ....+.+++.|++++.+.....+ +..+.....||.|++|||+. |..+++||.+
T Consensus 190 ----~~~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~~~---~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~ 250 (485)
T TIGR01317 190 ----KLD-KAIV-----------DRRIDLLSAEGIDFVTNTEIGVD---ISADELKEQFDAVVLAGGATKPRDLPIPGRE 250 (485)
T ss_pred ----cCC-HHHH-----------HHHHHHHHhCCCEEECCCEeCCc---cCHHHHHhhCCEEEEccCCCCCCcCCCCCcC
Confidence 001 1111 11224456679999876533211 11122235799999999998 8888899864
Q ss_pred --ceecchhhh----------------cCCCCCCeEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCccCCCC--C----
Q 008839 231 --YAIDSDAAL----------------DLPSKPEKIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKVLRGF--D---- 285 (551)
Q Consensus 231 --~~~~~~~~~----------------~~~~~~~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~l~~~--~---- 285 (551)
.+++.-+++ .....+++|+|||+|++|+|+|..+.++| .+|+++++.+..+... +
T Consensus 251 ~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~ 330 (485)
T TIGR01317 251 LKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWP 330 (485)
T ss_pred CCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCC
Confidence 343322111 01134789999999999999987777776 5799999877644321 1
Q ss_pred ---H--HHHHHHHHHHHhcCcEE-EcCcccEEEEEcC-CceEEEEE--------CCC-----------eEEEeeEEEEec
Q 008839 286 ---E--DIRDFVAEQMSLRGIEF-HTEESPQAILKST-DGSLSVKT--------NKG-----------TVDGFSHVMFAT 339 (551)
Q Consensus 286 ---~--~~~~~l~~~l~~~Gv~i-~~~~~v~~i~~~~-~~~~~V~~--------~~G-----------~~i~~d~vi~a~ 339 (551)
. ++.....+..+..|+.+ ++++.+.+|..++ +.+..|.+ .+| .++++|.||+|+
T Consensus 331 ~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~Ai 410 (485)
T TIGR01317 331 EWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAM 410 (485)
T ss_pred ccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEcc
Confidence 0 12223344444567654 5677888887654 33333332 133 269999999999
Q ss_pred CcC-CCCCCCCccccCeeecCCCCeE-eCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 340 GRR-PNTKNLGLEKVGVKMTKNGAIE-VDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 340 G~~-p~~~~l~l~~~gl~~~~~G~i~-vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
|.. |++.+ ++..+++++++|.+. +|++++|+.|+|||+|||+..+.++..|+.+|++||.+|.
T Consensus 411 G~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 411 GFVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred CcCCCcccc--ccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHH
Confidence 996 88876 567788888889885 4678999999999999999888888899999999999974
No 67
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.96 E-value=2.8e-28 Score=236.72 Aligned_cols=283 Identities=22% Similarity=0.382 Sum_probs=204.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+.+|||+|+|.+|.+....|-..-++|++|. |+++ . ...-..||..
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVS-PRny-----F-------lFTPLLpS~~------------------- 100 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVS-PRNY-----F-------LFTPLLPSTT------------------- 100 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEec-cccc-----e-------EEeeccCCcc-------------------
Confidence 346899999999999999999988889999999 2221 0 0001111100
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC--EEEE-----cC----EEEEeCeEEEcCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH--TVDV-----DG----KLYSARHILISVG 218 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~--~v~v-----~g----~~~~~d~lviAtG 218 (551)
-..+..+++.+........ ...++.++..+...+|+. .+.+ ++ ..+.||+||+|+|
T Consensus 101 ----vGTve~rSIvEPIr~i~r~---------k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~G 167 (491)
T KOG2495|consen 101 ----VGTVELRSIVEPIRAIARK---------KNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVG 167 (491)
T ss_pred ----ccceeehhhhhhHHHHhhc---------cCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEecc
Confidence 1122233333322211111 122678888887777764 4444 33 4789999999999
Q ss_pred CCCCCCCCCCCC-c------eecchhh-------h---cCCC-------CCCeEEEEcCcHHHHHHHHHHHhC-------
Q 008839 219 GRPFIPDIPGSE-Y------AIDSDAA-------L---DLPS-------KPEKIAIVGGGYIALEFAGIFSGL------- 267 (551)
Q Consensus 219 ~~p~~p~i~g~~-~------~~~~~~~-------~---~~~~-------~~~~vvViG~G~~g~e~a~~l~~~------- 267 (551)
+.++.+.+||.. + +.+..++ + ++.. .--+++|||||++|+|+|..|+.+
T Consensus 168 A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k 247 (491)
T KOG2495|consen 168 AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRK 247 (491)
T ss_pred CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHH
Confidence 999999999963 2 1122211 0 1111 112789999999999999988754
Q ss_pred -------CCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEe
Q 008839 268 -------TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFA 338 (551)
Q Consensus 268 -------g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a 338 (551)
-.+||+++..+.+|+.||..+.+..++.+.+.||++..++.|.++.... +.+...+|+ +|++-+++|+
T Consensus 248 ~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~---I~~~~~~g~~~~iPYG~lVWa 324 (491)
T KOG2495|consen 248 IYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT---IHAKTKDGEIEEIPYGLLVWA 324 (491)
T ss_pred hhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE---EEEEcCCCceeeecceEEEec
Confidence 3589999999999999999999999999999999999999999996543 666666774 6899999999
Q ss_pred cCcCCCCCCCCccccCeeecCCC--CeEeCCCCCC-CCCcEEEeCcCCCC---CCChHHHHHhHHHHHHHH
Q 008839 339 TGRRPNTKNLGLEKVGVKMTKNG--AIEVDEYSGT-AVPSIWAVGDVTDR---INLTPVALMEGGALAKTL 403 (551)
Q Consensus 339 ~G~~p~~~~l~l~~~gl~~~~~G--~i~vd~~~~t-~~~~vya~GD~~~~---~~~~~~A~~~g~~aa~~i 403 (551)
||..|... ....--.+++.| ++.|||+||. +.+||||+|||+.. .+++.+|.+||.++|+|+
T Consensus 325 tG~~~rp~---~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 325 TGNGPRPV---IKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNF 392 (491)
T ss_pred CCCCCchh---hhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHH
Confidence 99988764 223333345555 8999999996 89999999999953 468889999999999986
No 68
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-27 Score=211.41 Aligned_cols=283 Identities=23% Similarity=0.268 Sum_probs=204.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+-+|+|||+|||+.+||+++++..++-+|+|..+.- .-..||+... ...+.+++.|.-.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-----~i~pGGQLtT---------------TT~veNfPGFPdg- 66 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-----GIAPGGQLTT---------------TTDVENFPGFPDG- 66 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-----CcCCCceeee---------------eeccccCCCCCcc-
Confidence 458999999999999999999999999999931110 2234565432 2345566665432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec----CCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD----PHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~----~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
+...++++++++.. ++.|.+++..++..++ ++.+..+.+.+.+|.+|+|||+..+...+|
T Consensus 67 -----i~G~~l~d~mrkqs-----------~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~p 130 (322)
T KOG0404|consen 67 -----ITGPELMDKMRKQS-----------ERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLP 130 (322)
T ss_pred -----cccHHHHHHHHHHH-----------HhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecC
Confidence 33456666555433 4458999888776654 455566888999999999999988877777
Q ss_pred CC-Cc-ee--------cchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHH-HHH
Q 008839 228 GS-EY-AI--------DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA-EQM 296 (551)
Q Consensus 228 g~-~~-~~--------~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~-~~l 296 (551)
|. +. +| -++.+.-+ ...|.++|||||.+++|-|.+|.+.+.+|++++|++.+.. +..++ +.+
T Consensus 131 g~ge~~fWqrGiSaCAVCDGaapi-frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~ 203 (322)
T KOG0404|consen 131 GEGEGEFWQRGISACAVCDGAAPI-FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAE 203 (322)
T ss_pred CCCcchHHhcccchhhcccCcchh-hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH------HHHHHHHHh
Confidence 75 32 11 12222111 2357899999999999999999999999999999987632 33444 445
Q ss_pred HhcCcEEEcCcccEEEEEcCCc--eEEEE---ECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC-CCC
Q 008839 297 SLRGIEFHTEESPQAILKSTDG--SLSVK---TNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE-YSG 370 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~--~~~V~---~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~ 370 (551)
+.-+|++++|+.+.+...+++. .+.++ +.+-..++++-++.++|..|++.+ ++. .+++|++|+|++-+ .-.
T Consensus 204 ~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~--l~g-qve~d~~GYi~t~pgts~ 280 (322)
T KOG0404|consen 204 KNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKF--LKG-QVELDEDGYIVTRPGTSL 280 (322)
T ss_pred cCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhH--hcC-ceeeccCceEEeccCccc
Confidence 5669999999999888776432 12332 233346999999999999999998 444 89999999999985 567
Q ss_pred CCCCcEEEeCcCCCC-CCChHHHHHhHHHHHH
Q 008839 371 TAVPSIWAVGDVTDR-INLTPVALMEGGALAK 401 (551)
Q Consensus 371 t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~ 401 (551)
||+|++||+||+... +.++..|...|.++|.
T Consensus 281 TsvpG~FAAGDVqD~kyRQAvTaAgsGciaal 312 (322)
T KOG0404|consen 281 TSVPGVFAAGDVQDKKYRQAVTAAGSGCIAAL 312 (322)
T ss_pred ccccceeeccccchHHHHHHHhhhccchhhhh
Confidence 999999999999874 4445555556666554
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=6.2e-27 Score=255.40 Aligned_cols=277 Identities=21% Similarity=0.327 Sum_probs=196.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||||++|+++|..|++.|++|+|+|+ ...+||.+. +|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~---------~~~~GG~l~-~gip~~---------------------- 356 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDR---------HPEIGGMLT-FGIPPF---------------------- 356 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeC---------CCCCCCeee-ccCCcc----------------------
Confidence 357899999999999999999999999999993 455677653 333221
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g~ 229 (551)
.++ ..+. ....+.+.+.|+++..+.... ..+.++.....||.|++|||+.+ ..+++||.
T Consensus 357 -----~l~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~---~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~ 416 (639)
T PRK12809 357 -----KLD-KTVL-----------SQRREIFTAMGIDFHLNCEIG---RDITFSDLTSEYDAVFIGVGTYGMMRADLPHE 416 (639)
T ss_pred -----cCC-HHHH-----------HHHHHHHHHCCeEEEcCCccC---CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCC
Confidence 011 1111 112245567799988764211 11222223357999999999874 45667775
Q ss_pred C--ceecc--------hhhhcC---------CCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc-CCCCCHHH
Q 008839 230 E--YAIDS--------DAALDL---------PSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV-LRGFDEDI 288 (551)
Q Consensus 230 ~--~~~~~--------~~~~~~---------~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~ 288 (551)
+ .+++. .+...+ ...+++++|+|+|.++++.|..+.++|. +||++.+.+.. ++....++
T Consensus 417 ~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~ 496 (639)
T PRK12809 417 DAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEV 496 (639)
T ss_pred ccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH
Confidence 4 23321 111111 1246899999999999999999888885 89999987654 33333322
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceE-EEEE---C------CC-----------eEEEeeEEEEecCcCCCCCC
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSL-SVKT---N------KG-----------TVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~V~~---~------~G-----------~~i~~d~vi~a~G~~p~~~~ 347 (551)
..+++.||++++++.+++|..++++.+ .+.+ . +| ..+++|.||+|+|+.|+...
T Consensus 497 -----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~ 571 (639)
T PRK12809 497 -----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMP 571 (639)
T ss_pred -----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccc
Confidence 235678999999999999986544322 2321 1 12 26899999999999997543
Q ss_pred CCccccCeeecCCCCeEeCC----CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcC
Q 008839 348 LGLEKVGVKMTKNGAIEVDE----YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd~----~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g 405 (551)
+ ++..+++++++|.|.||+ +++|+.|+|||+||++.++.++..|+.+|+.||.+|..
T Consensus 572 ~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 572 W-LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred c-ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 2 667889999999999986 47999999999999999888888999999999999863
No 70
>PRK13984 putative oxidoreductase; Provisional
Probab=99.95 E-value=5.2e-27 Score=255.73 Aligned_cols=277 Identities=21% Similarity=0.312 Sum_probs=186.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||+|+||+++|..|++.|++|+|+|+ ....||.... + +|. +
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~---------~~~~gG~~~~-~-i~~------------------~--- 329 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYES---------LSKPGGVMRY-G-IPS------------------Y--- 329 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCceEee-c-CCc------------------c---
Confidence 457899999999999999999999999999993 4455665421 1 110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
. ...++.. ...+.+++.|++++.+.....+ +..+.....||+||+|||+. |+.+++||.
T Consensus 330 -----~-~~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~~---~~~~~~~~~yD~vilAtGa~~~r~l~i~G~ 389 (604)
T PRK13984 330 -----R-LPDEALD-----------KDIAFIEALGVKIHLNTRVGKD---IPLEELREKHDAVFLSTGFTLGRSTRIPGT 389 (604)
T ss_pred -----c-CCHHHHH-----------HHHHHHHHCCcEEECCCEeCCc---CCHHHHHhcCCEEEEEcCcCCCccCCCCCc
Confidence 0 0111111 1123456678998876433211 11122235799999999987 577889986
Q ss_pred C--ceecchhhhc-C----------CCCCCeEEEEcCcHHHHHHHHHHHhCCC------eEEEEeecCccCCCCCHHHHH
Q 008839 230 E--YAIDSDAALD-L----------PSKPEKIAIVGGGYIALEFAGIFSGLTS------EVHVFIRQKKVLRGFDEDIRD 290 (551)
Q Consensus 230 ~--~~~~~~~~~~-~----------~~~~~~vvViG~G~~g~e~a~~l~~~g~------~Vtlv~~~~~~l~~~~~~~~~ 290 (551)
+ .+++..+.+. + ...+++|+|||+|++|+|+|..+.+++. +|+++.... ....++... .
T Consensus 390 ~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r-~~~~~~~~~-~ 467 (604)
T PRK13984 390 DHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER-TFEEMPADM-E 467 (604)
T ss_pred CCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc-CcccCCCCH-H
Confidence 4 2443333322 1 1236899999999999999999998753 788764321 111122221 1
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC--------C-----------CeEEEeeEEEEecCcCCCCCCCCcc
Q 008839 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN--------K-----------GTVDGFSHVMFATGRRPNTKNLGLE 351 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~--------~-----------G~~i~~d~vi~a~G~~p~~~~l~l~ 351 (551)
.+.+ +.+.||++++++.+.++..+++....|++. + ++++++|.||+|+|+.|+++++..+
T Consensus 468 e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~ 546 (604)
T PRK13984 468 EIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEE 546 (604)
T ss_pred HHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhh
Confidence 2333 346799999999998886544432333321 1 2369999999999999998875311
Q ss_pred -ccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 352 -KVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 352 -~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
..++++ ++|.|.||+++||++|+|||+||++..+.+ ..|+.+|+.||.+|.
T Consensus 547 ~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 547 LKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGID 598 (604)
T ss_pred hccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHH
Confidence 124554 468899999999999999999999987754 679999999999975
No 71
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=233.56 Aligned_cols=319 Identities=24% Similarity=0.250 Sum_probs=232.9
Q ss_pred hCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCCCCCce---ecchhhhcCC---CCCCeEEEEc
Q 008839 183 NAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYA---IDSDAALDLP---SKPEKIAIVG 252 (551)
Q Consensus 183 ~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g~~~~---~~~~~~~~~~---~~~~~vvViG 252 (551)
+.++++..+ .+..+++ +.+.+ ++ .+.||++++|||++|..++....... ...++..... ...++++|+|
T Consensus 65 ~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG 143 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVG 143 (415)
T ss_pred hhCCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEEC
Confidence 346777765 4666765 45555 55 89999999999999998761112212 2222222221 1257999999
Q ss_pred CcHHHHHHHHHHHhCCCeEEEEeecCccCCCCC-HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEE--EEECCCeE
Q 008839 253 GGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD-EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLS--VKTNKGTV 329 (551)
Q Consensus 253 ~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~--V~~~~G~~ 329 (551)
+|++|+|+|..+++.|++|++++..+++++.+. +++.+.+.+.+++.||+++++..+.+|+...+.... +...+++.
T Consensus 144 ~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 223 (415)
T COG0446 144 AGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE 223 (415)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcE
Confidence 999999999999999999999999999988766 899999999999999999999999999887654222 57778888
Q ss_pred EEeeEEEEecCcCCCCCCCCccccC-eeecCCCCeEeCCCCCCC-CCcEEEeCcCCCC----------CCChHHHHHhHH
Q 008839 330 DGFSHVMFATGRRPNTKNLGLEKVG-VKMTKNGAIEVDEYSGTA-VPSIWAVGDVTDR----------INLTPVALMEGG 397 (551)
Q Consensus 330 i~~d~vi~a~G~~p~~~~l~l~~~g-l~~~~~G~i~vd~~~~t~-~~~vya~GD~~~~----------~~~~~~A~~~g~ 397 (551)
+++|.+++++|.+|+..+ ..+.+ .....+|+|.||++++|+ .++|||+|||+.. ...+..|..+++
T Consensus 224 ~~~d~~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~ 301 (415)
T COG0446 224 IKADLVIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR 301 (415)
T ss_pred EEeeEEEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhH
Confidence 999999999999999775 34443 145667889999999997 9999999998874 245678999999
Q ss_pred HHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccc-cccCCCcEEEEEEEECCCCe
Q 008839 398 ALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKAT-LSGLPDRIFMKLVLCAKTNK 476 (551)
Q Consensus 398 ~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kl~~~~~~~~ 476 (551)
+++.++.+. ...............+......|+++. .+...+ ............. +.........|++++..+++
T Consensus 302 i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T COG0446 302 IAAENIAGA-LRIPGLLGTVISDVGDLCAASTGLTEG--KERGID-VVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGR 377 (415)
T ss_pred HHHHHhccc-cccccccCceEEEEcCeEEEEecCCcc--ccccee-eeEEEeccCcccccccCCCCeEEEEEEEcCcccc
Confidence 999999976 222111222223344567888998887 222212 1111111111122 22333445788999989999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC
Q 008839 477 VLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT 510 (551)
Q Consensus 477 ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~ 510 (551)
++|++. -. ....++.+..++..+.++.++...
T Consensus 378 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 409 (415)
T COG0446 378 ILGGQE-LE-VLKRIGALALAIGLGDTVAELDAL 409 (415)
T ss_pred eehhhh-HH-HHhhhhhhhhhhhhcCchhhhhhc
Confidence 999999 43 667889999999999999888654
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=1.7e-25 Score=232.57 Aligned_cols=282 Identities=17% Similarity=0.228 Sum_probs=190.0
Q ss_pred CccEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 72 DFDLFTIGAGSGGVRASRFAAN--FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+|+||||||||++||..|++ .|++|+|||+ ...+||.. .+|..|.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~---------~p~pgGlv-r~gvaP~--------------------- 74 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIER---------LPTPFGLV-RSGVAPD--------------------- 74 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEec---------CCCCcceE-eeccCCC---------------------
Confidence 5789999999999999999987 7999999993 44567754 3333331
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPG 228 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g 228 (551)
+. ....+...+..++...+++++.+.. ++ ..+.++.....||.||+|||+.+ +.+++||
T Consensus 75 ---------~~--------~~k~v~~~~~~~~~~~~v~~~~nv~--vg-~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG 134 (491)
T PLN02852 75 ---------HP--------ETKNVTNQFSRVATDDRVSFFGNVT--LG-RDVSLSELRDLYHVVVLAYGAESDRRLGIPG 134 (491)
T ss_pred ---------cc--------hhHHHHHHHHHHHHHCCeEEEcCEE--EC-ccccHHHHhhhCCEEEEecCCCCCCCCCCCC
Confidence 00 0111122233345556788776421 11 22333333357999999999986 6778998
Q ss_pred CC--ceecchhhhc----------C---CCCCCeEEEEcCcHHHHHHHHHHHhC--------------------CC-eEE
Q 008839 229 SE--YAIDSDAALD----------L---PSKPEKIAIVGGGYIALEFAGIFSGL--------------------TS-EVH 272 (551)
Q Consensus 229 ~~--~~~~~~~~~~----------~---~~~~~~vvViG~G~~g~e~a~~l~~~--------------------g~-~Vt 272 (551)
.+ .+++..++.. + ...+++++|||+|++|+|+|..|.+. +. +|+
T Consensus 135 ~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~ 214 (491)
T PLN02852 135 EDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVY 214 (491)
T ss_pred CCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEE
Confidence 64 4555555421 1 12468999999999999999998765 64 699
Q ss_pred EEeecCccCCCC-CHHH-------------------------------------HHHHHHHHHh---------cCcEEEc
Q 008839 273 VFIRQKKVLRGF-DEDI-------------------------------------RDFVAEQMSL---------RGIEFHT 305 (551)
Q Consensus 273 lv~~~~~~l~~~-~~~~-------------------------------------~~~l~~~l~~---------~Gv~i~~ 305 (551)
++.|+...-..| ..++ .+.+.+...+ +++.+++
T Consensus 215 iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f 294 (491)
T PLN02852 215 LVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVF 294 (491)
T ss_pred EEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEc
Confidence 999887421111 1111 1122222222 5799999
Q ss_pred CcccEEEEEc--C-CceEEEEEC-----------------CCe--EEEeeEEEEecCcC--CCCCC-CCccccCeeecCC
Q 008839 306 EESPQAILKS--T-DGSLSVKTN-----------------KGT--VDGFSHVMFATGRR--PNTKN-LGLEKVGVKMTKN 360 (551)
Q Consensus 306 ~~~v~~i~~~--~-~~~~~V~~~-----------------~G~--~i~~d~vi~a~G~~--p~~~~-l~l~~~gl~~~~~ 360 (551)
.....+|..+ + +.+..+++. +|+ +++||.||.++|+. |...+ + ....++..+.+
T Consensus 295 ~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f-~~~~gv~~n~~ 373 (491)
T PLN02852 295 FRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPF-DHKRGVVPNVH 373 (491)
T ss_pred cCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcc-ccCcCeeECCC
Confidence 9999999742 2 233334331 232 58999999999998 55442 2 13346777888
Q ss_pred CCeEeCCCCCCCCCcEEEeCcCCCCCC-ChHHHHHhHHHHHHHHcC
Q 008839 361 GAIEVDEYSGTAVPSIWAVGDVTDRIN-LTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 361 G~i~vd~~~~t~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 405 (551)
|+|.+|+.++|++|+|||+|||..++. +...++.+|+.++++|..
T Consensus 374 G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 374 GRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred ceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHH
Confidence 999999988999999999999998764 667888999999998874
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-26 Score=216.19 Aligned_cols=280 Identities=21% Similarity=0.366 Sum_probs=203.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
.+..|||+||||||||-+||++.+|+|.+.-++- ..+||+..-.-. +.++.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a-----------erfGGQvldT~~---------------IENfI--- 258 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-----------ERFGGQVLDTMG---------------IENFI--- 258 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhh-----------hhhCCeeccccc---------------hhhee---
Confidence 3456999999999999999999999999988874 457777532110 01110
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec-------CCEEEE-cCEEEEeCeEEEcCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD-------PHTVDV-DGKLYSARHILISVGG 219 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~-------~~~v~v-~g~~~~~d~lviAtG~ 219 (551)
..+....+++.....++++.+ .|++.+. ++..+. -..+++ +|-.+.++.+|++||+
T Consensus 259 ----sv~~teGpkl~~ale~Hv~~Y-----------~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA 323 (520)
T COG3634 259 ----SVPETEGPKLAAALEAHVKQY-----------DVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA 323 (520)
T ss_pred ----ccccccchHHHHHHHHHHhhc-----------CchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc
Confidence 122334455555555444443 3333322 111111 224555 8889999999999999
Q ss_pred CCCCCCCCCCC--------ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHH
Q 008839 220 RPFIPDIPGSE--------YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDF 291 (551)
Q Consensus 220 ~p~~p~i~g~~--------~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 291 (551)
+.+-.++||.+ ++-+++..+ ..+|+|+|||||++|+|.|-.|+-.-..||+++-.+.+-. -+.
T Consensus 324 rWRn~nvPGE~e~rnKGVayCPHCDGPL---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA------D~V 394 (520)
T COG3634 324 RWRNMNVPGEDEYRNKGVAYCPHCDGPL---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA------DAV 394 (520)
T ss_pred chhcCCCCchHHHhhCCeeeCCCCCCcc---cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh------HHH
Confidence 99988899854 233455443 2479999999999999999999988889999987655321 234
Q ss_pred HHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEe
Q 008839 292 VAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365 (551)
Q Consensus 292 l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v 365 (551)
+++.|.. .+++++.|...++|..+++++..++.. +|+ .++-+-|++-+|.-||+++ ++.. ++++++|-|.|
T Consensus 395 Lq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIiv 471 (520)
T COG3634 395 LQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIV 471 (520)
T ss_pred HHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhH--hhch-hhcCcCccEEE
Confidence 5555554 489999999999999887765555553 333 4667789999999999998 5665 88999999999
Q ss_pred CCCCCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008839 366 DEYSGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 366 d~~~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|....||+|+|||+|||+.. ++....|+-+|..|+-..+
T Consensus 472 D~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 472 DARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ecCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhh
Confidence 99999999999999999986 4666677777877776655
No 74
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-25 Score=216.73 Aligned_cols=301 Identities=20% Similarity=0.285 Sum_probs=215.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHh--CCCcEEEEc----cCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAAN--FGASVAICE----LPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE 143 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE----~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~ 143 (551)
..+...+|||+|.+..+++..... .+.+|.+|. .||++++....-+.-| .|. ....
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~-------dpn-----------~~k~ 237 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYG-------DPN-----------SAKK 237 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecC-------CCC-----------hhhh
Confidence 346778999999998877766654 678899986 7888866554332111 111 1111
Q ss_pred ccCCCcc-------cC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC--CEEEE-cCEEEEeC
Q 008839 144 SNGFGWK-------YG-TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP--HTVDV-DGKLYSAR 211 (551)
Q Consensus 144 ~~~~g~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~--~~v~v-~g~~~~~d 211 (551)
+..-.|. +. ....++..++- ...+-||.+..|. +..++. +.|.+ ||.+|.||
T Consensus 238 lrfkqwsGkeRsiffepd~FfvspeDLp----------------~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~Yd 301 (659)
T KOG1346|consen 238 LRFKQWSGKERSIFFEPDGFFVSPEDLP----------------KAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYD 301 (659)
T ss_pred eeecccCCccceeEecCCcceeChhHCc----------------ccccCceEEEeccceEEeecccCeEEecCCcEeehh
Confidence 1111111 00 00111111111 1234488898884 555654 34444 88999999
Q ss_pred eEEEcCCCCCCCCC-CCCC--------CceecchhhhcCCC---CCCeEEEEcCcHHHHHHHHHHHhC----CCeEEEEe
Q 008839 212 HILISVGGRPFIPD-IPGS--------EYAIDSDAALDLPS---KPEKIAIVGGGYIALEFAGIFSGL----TSEVHVFI 275 (551)
Q Consensus 212 ~lviAtG~~p~~p~-i~g~--------~~~~~~~~~~~~~~---~~~~vvViG~G~~g~e~a~~l~~~----g~~Vtlv~ 275 (551)
+++||||.+|...+ +... -.+....++..+++ ..++|.|||+|++|.|+|..|.+. |.+|+-+.
T Consensus 302 kcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF 381 (659)
T KOG1346|consen 302 KCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVF 381 (659)
T ss_pred heeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEee
Confidence 99999999997554 2221 13455666665543 247999999999999999998764 67887665
Q ss_pred ecCccCCC-CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccC
Q 008839 276 RQKKVLRG-FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVG 354 (551)
Q Consensus 276 ~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~g 354 (551)
.....+.. +++-++++-.+.+++.||.++.|..|.++.....+ +.+.++||.++..|+||+|+|..||+++ ++..|
T Consensus 382 ~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l~lkL~dG~~l~tD~vVvavG~ePN~el--a~~sg 458 (659)
T KOG1346|consen 382 EEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-LVLKLSDGSELRTDLVVVAVGEEPNSEL--AEASG 458 (659)
T ss_pred cccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccc-eEEEecCCCeeeeeeEEEEecCCCchhh--ccccc
Confidence 54444444 67778888899999999999999999999877666 7899999999999999999999999998 78889
Q ss_pred eeecCC-CCeEeCCCCCCCCCcEEEeCcCCCC---------CCChHHHHHhHHHHHHHHcCCCC
Q 008839 355 VKMTKN-GAIEVDEYSGTAVPSIWAVGDVTDR---------INLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 355 l~~~~~-G~i~vd~~~~t~~~~vya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
+++|++ |++.||..|+.. .|||++||++.. ...+..|.-.||.|++||.|-..
T Consensus 459 LeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 459 LEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK 521 (659)
T ss_pred ceeecccCcEEeeheeecc-cceeeecchhhhhcccccceeccccccceeeceecccccccccC
Confidence 999875 889999999864 899999999874 24566789999999999998554
No 75
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.93 E-value=1.9e-24 Score=245.86 Aligned_cols=272 Identities=18% Similarity=0.124 Sum_probs=184.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||.+|++.|++|+|||+ ...+||.+.... ..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~---------~~~~GG~~~~~~------------------------~~ 208 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDE---------QPEAGGSLLSEA------------------------ET 208 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEec---------CCCCCCeeeccc------------------------cc
Confidence 468999999999999999999999999999993 445777753211 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeE-EEEecCC-EEEE------------c----C--EEEE
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGR-GKIVDPH-TVDV------------D----G--KLYS 209 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~i~~~-~v~v------------~----g--~~~~ 209 (551)
.+..+..++... ....+... ++++..++ +..+... .+.. + + ..+.
T Consensus 209 ---~~g~~~~~~~~~-----------~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~ 274 (985)
T TIGR01372 209 ---IDGKPAADWAAA-----------TVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIR 274 (985)
T ss_pred ---cCCccHHHHHHH-----------HHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEE
Confidence 001111111111 11122223 47776542 3222221 1100 0 1 2689
Q ss_pred eCeEEEcCCCCCCCCCCCCCCc--eecchhhh---cC-C-CCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccC
Q 008839 210 ARHILISVGGRPFIPDIPGSEY--AIDSDAAL---DL-P-SKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVL 281 (551)
Q Consensus 210 ~d~lviAtG~~p~~p~i~g~~~--~~~~~~~~---~~-~-~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l 281 (551)
||+||||||+.++.|++||.+. +++..... .. . ..+++++|||+|++++|+|..|.+.|. .|++++..+.+
T Consensus 275 a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~- 353 (985)
T TIGR01372 275 AKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV- 353 (985)
T ss_pred cCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-
Confidence 9999999999999999998653 44443222 11 1 236899999999999999999999995 57888776543
Q ss_pred CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC----CCeEEEeeEEEEecCcCCCCCCCCccccCee-
Q 008839 282 RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN----KGTVDGFSHVMFATGRRPNTKNLGLEKVGVK- 356 (551)
Q Consensus 282 ~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~----~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~- 356 (551)
...+.+.|++.||+++.++.++++..++.. ..|++. ++++++||.|+++.|..|++++ +..++.+
T Consensus 354 -------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v-~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~ 423 (985)
T TIGR01372 354 -------SPEARAEARELGIEVLTGHVVAATEGGKRV-SGVAVARNGGAGQRLEADALAVSGGWTPVVHL--FSQRGGKL 423 (985)
T ss_pred -------hHHHHHHHHHcCCEEEcCCeEEEEecCCcE-EEEEEEecCCceEEEECCEEEEcCCcCchhHH--HHhcCCCe
Confidence 334667789999999999999999765432 334433 4567999999999999999987 4444433
Q ss_pred -ecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 357 -MTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 357 -~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
.++.....+ -.|++|+||++||+++.. .+..|..+|+.||..++
T Consensus 424 ~~~~~~~~~~---~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 424 AWDAAIAAFL---PGDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred eeccccCcee---cCCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 332211111 137899999999999754 56679999999998874
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=3.6e-24 Score=231.26 Aligned_cols=274 Identities=22% Similarity=0.356 Sum_probs=188.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||+||+||++|..|++.|++|+++|+ ...+||.+.+ + +|. | .
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~-g-ip~------------------~--~ 184 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA---------GPKLGGMMRY-G-IPA------------------Y--R 184 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCeeee-c-CCC------------------c--c
Confidence 346899999999999999999999999999993 4567776431 1 120 0 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g~ 229 (551)
.. .++... ..+.+.+.|+++..+.....+ +..+.....||.+++|||+.. ..+.++|.
T Consensus 185 ------~~-~~~~~~-----------~l~~~~~~Gv~~~~~~~~~~~---~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~ 243 (564)
T PRK12771 185 ------LP-REVLDA-----------EIQRILDLGVEVRLGVRVGED---ITLEQLEGEFDAVFVAIGAQLGKRLPIPGE 243 (564)
T ss_pred ------CC-HHHHHH-----------HHHHHHHCCCEEEeCCEECCc---CCHHHHHhhCCEEEEeeCCCCCCcCCCCCC
Confidence 00 111111 112345668887765322111 111111235899999999875 34456764
Q ss_pred C--ceecchhhhc------CCCCCCeEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCcc-CCCCCHHHHHHHHHHHHhc
Q 008839 230 E--YAIDSDAALD------LPSKPEKIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKV-LRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 230 ~--~~~~~~~~~~------~~~~~~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~ 299 (551)
+ .++..-+++. ....+++++|+|+|..+++.+..+.+++ .+|+++.+.+.. ++....+ + +.+.+.
T Consensus 244 ~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~----~-~~a~~~ 318 (564)
T PRK12771 244 DAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEE----I-EEALRE 318 (564)
T ss_pred ccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHH----H-HHHHHc
Confidence 3 1222222211 1234789999999999999999999988 679999887532 2222222 2 234567
Q ss_pred CcEEEcCcccEEEEEcCCceEEE-----EE----CC-------C--eEEEeeEEEEecCcCCCCCCCCccc-cCeeecCC
Q 008839 300 GIEFHTEESPQAILKSTDGSLSV-----KT----NK-------G--TVDGFSHVMFATGRRPNTKNLGLEK-VGVKMTKN 360 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V-----~~----~~-------G--~~i~~d~vi~a~G~~p~~~~l~l~~-~gl~~~~~ 360 (551)
||++++++.+.++..++++.+.+ .. .+ | .++++|.||+|+|..|+..+ ++. .++. +++
T Consensus 319 GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~--~~~~~gl~-~~~ 395 (564)
T PRK12771 319 GVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAG--LESVPGVE-VGR 395 (564)
T ss_pred CCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhh--hhhccCcc-cCC
Confidence 99999999999998765543222 21 12 2 36999999999999999877 343 5677 778
Q ss_pred CCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 361 GAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 361 G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
|+|.||+ +++|++|+|||+||++..+.++..|+.||+.||.+|.
T Consensus 396 G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 396 GVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred CCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 9999998 7889999999999999888888999999999999873
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.92 E-value=2.1e-23 Score=217.97 Aligned_cols=300 Identities=18% Similarity=0.176 Sum_probs=185.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCc--------chHH-----HHHh--h
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCV--------PKKL-----LVYA--S 135 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~--------p~~~-----l~~~--~ 135 (551)
..++|+|||||++||+||++|++.|++|+++|+ ...+||+|...... |... ++.. .
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~---------~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~t 79 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFER---------EKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRT 79 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEec---------CCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhc
Confidence 357999999999999999999999999999994 56799999764321 1110 1100 0
Q ss_pred hhhhHhhhccCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeE--EEE-eEEEEecC----CEEEE-c-C-
Q 008839 136 KFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGIT--LIE-GRGKIVDP----HTVDV-D-G- 205 (551)
Q Consensus 136 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-~~~~~i~~----~~v~v-~-g- 205 (551)
..+.....+..|.+.............+....+ +...++...+..++. +.. .++..++. +.+.+ + +
T Consensus 80 n~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~e----v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~ 155 (461)
T PLN02172 80 NLPRECMGYRDFPFVPRFDDESRDSRRYPSHRE----VLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG 155 (461)
T ss_pred cCCHhhccCCCCCCCcccccccCcCCCCCCHHH----HHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC
Confidence 111222223333332110000000000111111 222233344444554 222 34444432 23443 1 1
Q ss_pred E--EEEeCeEEEcCC--CCCCCCCCCCCCc----eecchhhhcCC-CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEee
Q 008839 206 K--LYSARHILISVG--GRPFIPDIPGSEY----AIDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIR 276 (551)
Q Consensus 206 ~--~~~~d~lviAtG--~~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~ 276 (551)
. +..||+||+||| +.|++|++||.+. .+++.+..... ..+|+|+|||+|.+|+|+|..|...+.+|+++.|
T Consensus 156 ~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r 235 (461)
T PLN02172 156 FSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASR 235 (461)
T ss_pred ceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEe
Confidence 1 457999999999 7899999999752 23333333222 2478999999999999999999999999999999
Q ss_pred cCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCee
Q 008839 277 QKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVK 356 (551)
Q Consensus 277 ~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~ 356 (551)
...... .+.+......+..+..|..+..+ + .|.+.||+.+++|.||+|||+.++..+| +.
T Consensus 236 ~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~--g--~V~f~DG~~~~~D~Ii~~TGy~~~~pfL--~~---- 295 (461)
T PLN02172 236 ASESDT----------YEKLPVPQNNLWMHSEIDTAHED--G--SIVFKNGKVVYADTIVHCTGYKYHFPFL--ET---- 295 (461)
T ss_pred eccccc----------cccCcCCCCceEECCcccceecC--C--eEEECCCCCccCCEEEECCcCCcccccc--Cc----
Confidence 764211 00111223445556677766532 2 2888999999999999999999999884 32
Q ss_pred ecCCCCeEeCCCC------C---CC-CCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC
Q 008839 357 MTKNGAIEVDEYS------G---TA-VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 357 ~~~~G~i~vd~~~------~---t~-~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
.|.+.+|++. + .. .|+++.+|=... ......+..|++.+|.-+.|..
T Consensus 296 ---~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~-~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 296 ---NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAM-GIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred ---ccceeeCCCcchhhHHhhcCCCCCCcEEEEecccc-ccCchhHHHHHHHHHHHHcCCC
Confidence 2344444321 1 23 489999996533 3345678899999999998854
No 78
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.90 E-value=2.3e-23 Score=174.74 Aligned_cols=109 Identities=33% Similarity=0.513 Sum_probs=102.8
Q ss_pred ccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHH
Q 008839 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFA 495 (551)
Q Consensus 416 ~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~ 495 (551)
+|+++|++|++++||+||+||++.+.++.+...++....++...+...+|+||++|++||+|||+|++|+++.|+|+.++
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~ 80 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELA 80 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHH
Confidence 58999999999999999999999988899999999988888878889999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008839 496 VAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 496 ~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
++|++++|++++.+.+++|||++|++.++
T Consensus 81 ~ai~~~~t~~~l~~~~~~~Pt~se~~~~a 109 (110)
T PF02852_consen 81 LAIQNGLTVEDLADDIFYHPTFSEAIQEA 109 (110)
T ss_dssp HHHHTTSBHHHHHTSBSSSTSTGHHHHHH
T ss_pred HHHHcCCCHHHHhCCeeeCCChhHHHHHh
Confidence 99999999999999999999999998764
No 79
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.86 E-value=1.1e-20 Score=200.04 Aligned_cols=306 Identities=18% Similarity=0.234 Sum_probs=161.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccC-----CCcchHHHHH--hhhhhhHhhhcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLR-----GCVPKKLLVY--ASKFSHEFDESN 145 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~-----g~~p~~~l~~--~~~~~~~~~~~~ 145 (551)
.+|+|||||++||++|..|.+.|++++++|+ .+.+||.|... |+-+ ++. .......+..+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~---------~~~iGG~W~~~~~~~~g~~~---~y~sl~~n~sk~~~~fs 69 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEK---------SDDIGGLWRYTENPEDGRSS---VYDSLHTNTSKEMMAFS 69 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEES---------SSSSSGGGCHSTTCCCSEGG---GSTT-B-SS-GGGSCCT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEec---------CCCCCccCeeCCcCCCCccc---cccceEEeeCchHhcCC
Confidence 4799999999999999999999999999994 78899999643 2211 000 011223334455
Q ss_pred CCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH--hCCeEEEEeEEEEec------CCEEEE--cC--EEEEeCeE
Q 008839 146 GFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILI--NAGITLIEGRGKIVD------PHTVDV--DG--KLYSARHI 213 (551)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~i~------~~~v~v--~g--~~~~~d~l 213 (551)
.|.++.+........++.++.+.+.+.+. +.+ +.+.++.. +...+ .+.+.+ ++ ++..||+|
T Consensus 70 dfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~-----L~~~I~fnt~V~~--v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V 142 (531)
T PF00743_consen 70 DFPFPEDYPDFPSHSEVLEYLESYAEHFG-----LRKHIRFNTEVVS--VERDPDFSATGKWEVTTENDGKEETEEFDAV 142 (531)
T ss_dssp TS-HCCCCSSSEBHHHHHHHHHHHHHHTT-----GGGGEETSEEEEE--EEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHhhhC-----CcceEEEccEEeE--eeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence 55554333333344555555444443321 111 11222222 22222 134444 33 34579999
Q ss_pred EEcCC--CCCCCCC--CCCCCc----eecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-CCC
Q 008839 214 LISVG--GRPFIPD--IPGSEY----AIDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-LRG 283 (551)
Q Consensus 214 viAtG--~~p~~p~--i~g~~~----~~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-l~~ 283 (551)
|+||| +.|++|. +||++. ++++.+..+.+. .+|+|+|||+|.+|+++|..+.+...+|++..|+..+ ++.
T Consensus 143 vvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr 222 (531)
T PF00743_consen 143 VVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPR 222 (531)
T ss_dssp EEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--------
T ss_pred EEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccc
Confidence 99999 6688885 899763 566666554332 4799999999999999999999999999998887543 221
Q ss_pred CC-----------------------HHHHHHH-HHHH--------------------------------HhcCcEEEcCc
Q 008839 284 FD-----------------------EDIRDFV-AEQM--------------------------------SLRGIEFHTEE 307 (551)
Q Consensus 284 ~~-----------------------~~~~~~l-~~~l--------------------------------~~~Gv~i~~~~ 307 (551)
.. ..+.+.+ .+.+ ....|.+. .
T Consensus 223 ~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~ 300 (531)
T PF00743_consen 223 YWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--P 300 (531)
T ss_dssp ----------------------------------------------------------------------------E--E
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 10 0011111 0011 11111111 1
Q ss_pred ccEEEEEcCCceEEEEECCCeEE-EeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCC---CCCCCcEEEeCcCC
Q 008839 308 SPQAILKSTDGSLSVKTNKGTVD-GFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS---GTAVPSIWAVGDVT 383 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i-~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~---~t~~~~vya~GD~~ 383 (551)
.|.++. + -.|.+.||+++ ++|.||+|||+.....+| ++.-+.... +.+..-.++ +...|++..+|=+.
T Consensus 301 ~I~~~~--~---~~v~F~DGs~~e~vD~II~~TGY~~~fpFL--~~~~~~~~~-~~~~LYk~vfp~~~~~ptLafIG~~~ 372 (531)
T PF00743_consen 301 DIKRFT--E---NSVIFEDGSTEEDVDVIIFCTGYKFSFPFL--DESLIKVDD-NRVRLYKHVFPPNLDHPTLAFIGLVQ 372 (531)
T ss_dssp -EEEE---S---SEEEETTSEEEEE-SEEEE---EE---TTB---TTTT-S-S-SSSSEETTTEETETTSTTEEESS-SB
T ss_pred cccccc--c---cccccccccccccccccccccccccccccc--ccccccccc-cccccccccccccccccccccccccc
Confidence 233332 1 23678999875 699999999999988874 333233222 222222222 12458999999765
Q ss_pred CCCCChHHHHHhHHHHHHHHcCCC
Q 008839 384 DRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 384 ~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
......+.+..|++++++-+.|..
T Consensus 373 ~~g~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 373 PFGSIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp SSS-HHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccccccccccccccccc
Confidence 433445678999999999998854
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.84 E-value=2.4e-20 Score=192.22 Aligned_cols=280 Identities=24% Similarity=0.331 Sum_probs=193.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|.|||||||||++|..|++.|++|+++|+ ....||... +| +|...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~---------~~~~GGll~-yG-IP~~k---------------------- 170 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFER---------VALDGGLLL-YG-IPDFK---------------------- 170 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCC---------cCCCceeEE-ec-Cchhh----------------------
Confidence 7899999999999999999999999999993 556666643 22 33100
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCC-CCCCCCCCCCC-
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGG-RPFIPDIPGSE- 230 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~-~p~~p~i~g~~- 230 (551)
.-..+.+...+.+++.|+++..+..... .+++..-.-.||.++++||+ .|+..++||.+
T Consensus 171 ----------------l~k~i~d~~i~~l~~~Gv~~~~~~~vG~---~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~ 231 (457)
T COG0493 171 ----------------LPKDILDRRLELLERSGVEFKLNVRVGR---DITLEELLKEYDAVFLATGAGKPRPLDIPGEDA 231 (457)
T ss_pred ----------------ccchHHHHHHHHHHHcCeEEEEcceECC---cCCHHHHHHhhCEEEEeccccCCCCCCCCCcCC
Confidence 0012222333566777999987642221 12222223457999999994 57777888864
Q ss_pred -ceecchhhhc------CC-----C----CCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc--CCCCCHHHHHH
Q 008839 231 -YAIDSDAALD------LP-----S----KPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV--LRGFDEDIRDF 291 (551)
Q Consensus 231 -~~~~~~~~~~------~~-----~----~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~--l~~~~~~~~~~ 291 (551)
.++..-+++. +. . .+++++|||+|.++++++....+.|+ .|+.+.+...- ...++......
T Consensus 232 ~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~ 311 (457)
T COG0493 232 KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQL 311 (457)
T ss_pred CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhh
Confidence 3433322221 11 1 23899999999999999999999998 67777532211 01122223455
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceE-EEEE-----C---C-----------Ce--EEEeeEEEEecCcCCCCCCCC
Q 008839 292 VAEQMSLRGIEFHTEESPQAILKSTDGSL-SVKT-----N---K-----------GT--VDGFSHVMFATGRRPNTKNLG 349 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~V~~-----~---~-----------G~--~i~~d~vi~a~G~~p~~~~l~ 349 (551)
..+...+.|+...+.....++..++++.+ .+.+ . + |+ .+++|.|+.|+|+.++.....
T Consensus 312 ~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~ 391 (457)
T COG0493 312 EVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGL 391 (457)
T ss_pred hhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccccc
Confidence 66777888999999988888887665422 2221 1 1 22 578999999999988755421
Q ss_pred ccccCeeecCCCCeEeCCCC-CCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008839 350 LEKVGVKMTKNGAIEVDEYS-GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 350 l~~~gl~~~~~G~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
....++..+..|.+.+|+.+ +|+.|++||.||+..+..+...|+.+|+.+++.|-
T Consensus 392 ~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 392 LLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 23336778889999999998 99999999999999987888899999999998764
No 81
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.81 E-value=3.7e-20 Score=173.68 Aligned_cols=179 Identities=36% Similarity=0.559 Sum_probs=120.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccCC
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGT 153 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~~ 153 (551)
||||||||+||++||.+|++.+.+|+|+|+ .. +.+.+..|++...+............
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 58 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK----------SP--GTPYNSGCIPSPLLVEIAPHRHEFLP---------- 58 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS----------SS--HHHHHHSHHHHHHHHHHHHHHHHHHH----------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec----------cc--cccccccccccccccccccccccccc----------
Confidence 799999999999999999999999999982 11 23334455665554333221111000
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEE-EEeEEEEec--CCE-------EE--E--cCEEEEeCeEEEcCCC
Q 008839 154 EPQHDWSTLIANKNAELQRLTGIYKNILINAGITL-IEGRGKIVD--PHT-------VD--V--DGKLYSARHILISVGG 219 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~i~--~~~-------v~--v--~g~~~~~d~lviAtG~ 219 (551)
.... .+.+.+...++++ +...+..++ ... +. . ++.++.||+||+|||+
T Consensus 59 ----------------~~~~--~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 59 ----------------ARLF--KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp ----------------HHHG--HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ----------------cccc--ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 0000 1112223346666 223333332 221 11 1 4568999999999999
Q ss_pred CCCCCCCCCCC------ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHH
Q 008839 220 RPFIPDIPGSE------YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293 (551)
Q Consensus 220 ~p~~p~i~g~~------~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 293 (551)
.|+.|++||.+ .+.++.++......+++++|||
T Consensus 121 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG----------------------------------------- 159 (201)
T PF07992_consen 121 RPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG----------------------------------------- 159 (201)
T ss_dssp EEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-----------------------------------------
T ss_pred ccceeecCCCccccccccccccccccccccccccccccc-----------------------------------------
Confidence 99999999863 3456666666656667999999
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCC
Q 008839 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAV 373 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~ 373 (551)
+.+|. +..+++++++|++.||+++||+.
T Consensus 160 ---------------------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~ 187 (201)
T PF07992_consen 160 ---------------------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSV 187 (201)
T ss_dssp ---------------------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSS
T ss_pred ---------------------------------------------------ccccc-ccccccccccccccccccccccc
Confidence 44432 78899999999999999999999
Q ss_pred CcEEEeCcCCCC
Q 008839 374 PSIWAVGDVTDR 385 (551)
Q Consensus 374 ~~vya~GD~~~~ 385 (551)
|||||+|||++.
T Consensus 188 ~~Iya~GD~a~~ 199 (201)
T PF07992_consen 188 PGIYAAGDCAGI 199 (201)
T ss_dssp TTEEE-GGGBEE
T ss_pred cccccccccccc
Confidence 999999999863
No 82
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.78 E-value=2.6e-17 Score=169.00 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=116.3
Q ss_pred EEEEcCcHHHHHHH-HHHH----hCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEE
Q 008839 248 IAIVGGGYIALEFA-GIFS----GLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSV 322 (551)
Q Consensus 248 vvViG~G~~g~e~a-~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V 322 (551)
=.|++.+.+|+|.+ ..++ ++|.+|+++...+..++. .++.+.+.+.+++.|++++.+++|.+++.++++...+
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG--~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG--LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch--HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 36789999999999 6665 569999999998887775 3788899999999999999999999998776553334
Q ss_pred EECCCe--EEEeeEEEEecCcCCCCCCC---------------------------------CccccCeeecCCCCeEeCC
Q 008839 323 KTNKGT--VDGFSHVMFATGRRPNTKNL---------------------------------GLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 323 ~~~~G~--~i~~d~vi~a~G~~p~~~~l---------------------------------~l~~~gl~~~~~G~i~vd~ 367 (551)
...+|+ .+++|.||+|+|+.+...+. .+...|+.+|++ ...+|.
T Consensus 296 ~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~~~ 374 (422)
T PRK05329 296 WTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPLDS 374 (422)
T ss_pred EeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcccC
Confidence 444553 58999999999987654331 112334444442 344455
Q ss_pred CCCCCCCcEEEeCcCCCCCCCh------HHHHHhHHHHHHHHcC
Q 008839 368 YSGTAVPSIWAVGDVTDRINLT------PVALMEGGALAKTLFQ 405 (551)
Q Consensus 368 ~~~t~~~~vya~GD~~~~~~~~------~~A~~~g~~aa~~i~g 405 (551)
..++.++||||+|++.+++..+ -+|+..|-.|+++|..
T Consensus 375 ~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 375 QGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred CCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 5556789999999999986433 3688899999998874
No 83
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.77 E-value=2.3e-17 Score=179.93 Aligned_cols=280 Identities=18% Similarity=0.160 Sum_probs=158.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh-hcc-CCC
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD-ESN-GFG 148 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~-~~g 148 (551)
..++|+||||||||++||++|++.|++|+++|+ ....|+..... -|-+. ...+...+. ..+ .+|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~---------~~i~gl~~~~~--~~i~~---~~~~~~~L~er~p~~~G 447 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG---------LKITLLPFDVH--KPIKF---WHEYKNLLSERMPRGFG 447 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc---------ccccccccccc--cccch---hhhhccchhhhccccCC
Confidence 357899999999999999999999999999992 11111110000 00000 000000000 000 011
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEecCCEEEEcC-EEEEeCeEEEcCCC-CCCCCC
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIVDPHTVDVDG-KLYSARHILISVGG-RPFIPD 225 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i~~~~v~v~g-~~~~~d~lviAtG~-~p~~p~ 225 (551)
-.......+.|.. ..++. ....+.. .++.++.+.. ++ ..++.+. ....||.|+||||+ .|+.++
T Consensus 448 G~~~yGIp~R~~k------~~l~~----i~~il~~g~~v~~~~gv~--lG-~dit~edl~~~gyDAV~IATGA~kpr~L~ 514 (1028)
T PRK06567 448 GVAEYGITVRWDK------NNLDI----LRLILERNNNFKYYDGVA--LD-FNITKEQAFDLGFDHIAFCIGAGQPKVLD 514 (1028)
T ss_pred cccccCccccchH------HHHHH----HHHHHhcCCceEEECCeE--EC-ccCCHHHHhhcCCCEEEEeCCCCCCCCCC
Confidence 1000011122221 11111 1112221 2455555532 11 1122212 34679999999999 799999
Q ss_pred CCCCC--ceecchhhhcCC--------------CCCCeEEEEcCcHHHHHHHHHHHh-----------------------
Q 008839 226 IPGSE--YAIDSDAALDLP--------------SKPEKIAIVGGGYIALEFAGIFSG----------------------- 266 (551)
Q Consensus 226 i~g~~--~~~~~~~~~~~~--------------~~~~~vvViG~G~~g~e~a~~l~~----------------------- 266 (551)
+||.+ .+++..+++... ..+++|+|||||.+|+|+|.....
T Consensus 515 IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~ 594 (1028)
T PRK06567 515 IENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDK 594 (1028)
T ss_pred CCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccH
Confidence 99965 466655543211 135799999999999999983221
Q ss_pred ----------------------------CCCeEEEEeecCcc-CCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC
Q 008839 267 ----------------------------LTSEVHVFIRQKKV-LRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD 317 (551)
Q Consensus 267 ----------------------------~g~~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~ 317 (551)
.|. |+++.|...- +|... --.+.+.+ ..+.||+++.+....+|..+++
T Consensus 595 eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~-~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~ 671 (1028)
T PRK06567 595 EIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYK-LNHEELIY-ALALGVDFKENMQPLRINVDKY 671 (1028)
T ss_pred HHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCC-CCHHHHHH-HHHcCcEEEecCCcEEEEecCC
Confidence 233 8887776431 12110 00123333 3467999999999999987654
Q ss_pred c-eEEEEEC--------------C-C---------------eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeC
Q 008839 318 G-SLSVKTN--------------K-G---------------TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVD 366 (551)
Q Consensus 318 ~-~~~V~~~--------------~-G---------------~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd 366 (551)
+ +..+++. + + .+++||.||+|+|..||+.+. +. +
T Consensus 672 g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~---------~~------~ 736 (1028)
T PRK06567 672 GHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD---------ED------K 736 (1028)
T ss_pred CeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc---------cc------c
Confidence 3 2223221 1 1 268999999999999999852 00 1
Q ss_pred CCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHH
Q 008839 367 EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTL 403 (551)
Q Consensus 367 ~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i 403 (551)
..+-++.+++|+- ....|+.+|+.++.+|
T Consensus 737 ~s~~~d~~~~f~G--------tvv~A~as~k~~~~~i 765 (1028)
T PRK06567 737 YSYFGDCNPKYSG--------SVVKALASSKEGYDAI 765 (1028)
T ss_pred cccccCCCCcccc--------HHHHHHHHHHhHHHHH
Confidence 1222345666654 5678999999999988
No 84
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.74 E-value=9.2e-18 Score=157.39 Aligned_cols=201 Identities=14% Similarity=0.175 Sum_probs=130.8
Q ss_pred CCEEEE-cCEEEEeCeEEEcCCCCCCCCCCCCCCce---------e-------cchhhhcCCC------CCC-eEEEEcC
Q 008839 198 PHTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYA---------I-------DSDAALDLPS------KPE-KIAIVGG 253 (551)
Q Consensus 198 ~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g~~~~---------~-------~~~~~~~~~~------~~~-~vvViG~ 253 (551)
.+++.+ +|++|+||++|||+|..-++-.|+|+... + ++..+.+.++ .|. .+-..|+
T Consensus 121 ~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGA 200 (446)
T KOG3851|consen 121 KNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGA 200 (446)
T ss_pred cCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCC
Confidence 345555 78999999999999988777777775211 1 1122222221 111 1222344
Q ss_pred cHHHHHHHH-HHHhCCC--eEEEEe--ecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC-C
Q 008839 254 GYIALEFAG-IFSGLTS--EVHVFI--RQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK-G 327 (551)
Q Consensus 254 G~~g~e~a~-~l~~~g~--~Vtlv~--~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G 327 (551)
-.-.+-++. ++++.|. ++.++. .-+.++. -..+.+.+++..+++.|++.....+.++..++...+--.+.+ |
T Consensus 201 PQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG 278 (446)
T KOG3851|consen 201 PQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG--VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPG 278 (446)
T ss_pred chhhhhhhHHHHHHhCccccccEEEecCccceec--HHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCC
Confidence 444555554 5677775 344443 3333332 467889999999999999999989999987665411111222 4
Q ss_pred e--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC-CCCC-CCCcEEEeCcCCCCC--CChHHHHHhHHHHHH
Q 008839 328 T--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE-YSGT-AVPSIWAVGDVTDRI--NLTPVALMEGGALAK 401 (551)
Q Consensus 328 ~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~t-~~~~vya~GD~~~~~--~~~~~A~~~g~~aa~ 401 (551)
. +++++++.+...+++... +.++.+ .|..|++.||. .+|. ..||||++|||.+.| +++..+..|..++-+
T Consensus 279 ~t~ei~yslLHv~Ppms~pe~---l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~ 354 (446)
T KOG3851|consen 279 VTEEIEYSLLHVTPPMSTPEV---LANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDK 354 (446)
T ss_pred ceeEEeeeeeeccCCCCChhh---hhcCcc-cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhh
Confidence 3 688999988776665443 455554 47889999995 6774 899999999999986 455555678888888
Q ss_pred HHc
Q 008839 402 TLF 404 (551)
Q Consensus 402 ~i~ 404 (551)
|+.
T Consensus 355 nl~ 357 (446)
T KOG3851|consen 355 NLT 357 (446)
T ss_pred hHH
Confidence 864
No 85
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=146.32 Aligned_cols=180 Identities=26% Similarity=0.364 Sum_probs=116.4
Q ss_pred CCEEEE-cCEEEEeCeEEEcCCCCCCCCCCCCCC-ce---ecchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCC
Q 008839 198 PHTVDV-DGKLYSARHILISVGGRPFIPDIPGSE-YA---IDSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTS 269 (551)
Q Consensus 198 ~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g~~-~~---~~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~ 269 (551)
.+.+.+ +|..+.|++|+++||.+|.+- ..|.+ .+ .+.+....+ -...|+|.|+|.|-+++|++..+. +.
T Consensus 80 ehci~t~~g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~ 156 (334)
T KOG2755|consen 80 EHCIHTQNGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--IL 156 (334)
T ss_pred cceEEecCCceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cc
Confidence 345555 789999999999999999754 23222 22 232322222 234789999999999999999886 45
Q ss_pred eEEEEeecCccCCC-CCHHHHHHHHHHHHh-----------------------------cCcEEEcCcccEEE-------
Q 008839 270 EVHVFIRQKKVLRG-FDEDIRDFVAEQMSL-----------------------------RGIEFHTEESPQAI------- 312 (551)
Q Consensus 270 ~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~-----------------------------~Gv~i~~~~~v~~i------- 312 (551)
+|++....+.+... +++.+.+.+...|.. .|-..+..-....+
T Consensus 157 nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~ 236 (334)
T KOG2755|consen 157 NVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRS 236 (334)
T ss_pred eeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhh
Confidence 78888877776655 666666554444310 00011110000110
Q ss_pred ------------EEcCCceEEEEE---CCC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008839 313 ------------LKSTDGSLSVKT---NKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 313 ------------~~~~~~~~~V~~---~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
...+. ..|.. ..| ..+.||.+++|+|..||.++ .-..-++..++|+++||+.|+|+.|+
T Consensus 237 l~~l~~~~~~~~d~~d~--~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~--~~~~~lq~~edggikvdd~m~tslpd 312 (334)
T KOG2755|consen 237 LTYLRNCVITSTDTSDN--LSVHYMDKEKMADNQLTCDFIVSATGVTPNSEW--AMNKMLQITEDGGIKVDDAMETSLPD 312 (334)
T ss_pred hHHhhhheeeeccchhh--cccccccccccccceeeeeEEEeccccCcCceE--EecChhhhccccCeeehhhccccccc
Confidence 01111 11111 111 14779999999999999985 44455677788999999999999999
Q ss_pred EEEeCcCCC
Q 008839 376 IWAVGDVTD 384 (551)
Q Consensus 376 vya~GD~~~ 384 (551)
+||+||++.
T Consensus 313 vFa~gDvct 321 (334)
T KOG2755|consen 313 VFAAGDVCT 321 (334)
T ss_pred eeeecceec
Confidence 999999987
No 86
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.6e-17 Score=169.03 Aligned_cols=186 Identities=21% Similarity=0.288 Sum_probs=116.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGAS-VAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~-V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
..++||+|||||++|+++|++|.+.|.. ++|+|| ....||+|... +.|+..+.. +.....++.+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek---------~~~~Gg~W~~~-ry~~l~~~~----p~~~~~~~~~p 71 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEK---------RDDVGGTWRYN-RYPGLRLDS----PKWLLGFPFLP 71 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEc---------cCCcCCcchhc-cCCceEECC----chheeccCCCc
Confidence 3468999999999999999999999998 999994 67899998542 111110000 01111222222
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCC----eEEEEe--EEEEec---CCEEEE-cCEE--EEeCeEEEc
Q 008839 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAG----ITLIEG--RGKIVD---PHTVDV-DGKL--YSARHILIS 216 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~--~~~~i~---~~~v~v-~g~~--~~~d~lviA 216 (551)
+... .....+..+.. .+...+++++ +.+... .+...+ .+++.+ ++.. +.+|.||+|
T Consensus 72 ~~~~-~~~~~~~~~~~-----------y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~A 139 (443)
T COG2072 72 FRWD-EAFAPFAEIKD-----------YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVA 139 (443)
T ss_pred cCCc-ccCCCcccHHH-----------HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEe
Confidence 2200 00011111111 1222233333 333222 122222 234555 3333 669999999
Q ss_pred CC--CCCCCCCCCCCCc----eecchhhhcC-CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008839 217 VG--GRPFIPDIPGSEY----AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 217 tG--~~p~~p~i~g~~~----~~~~~~~~~~-~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
|| +.|++|.++|.+. .+++.+..+- .-.+|+|+|||+|++|++++..|.+.|.+||++.|++...
T Consensus 140 TG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 140 TGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred ecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 99 7899999999763 4455444443 3458999999999999999999999999999999987653
No 87
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.72 E-value=4.3e-17 Score=153.11 Aligned_cols=185 Identities=24% Similarity=0.320 Sum_probs=99.2
Q ss_pred EEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccCCC
Q 008839 76 FTIGAGSGGVRASRFAANFGAS-VAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTE 154 (551)
Q Consensus 76 vIIGgG~aGl~aA~~l~~~G~~-V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~~~ 154 (551)
+|||||++||++|.+|.+.|.+ |+|||+ ...+||.|......+. +.... ... ..++.. ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~---------~~~~Gg~w~~~~~~~~--~~~~~-~~~-----~~~~~~--~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLER---------NDRPGGVWRRYYSYTR--LHSPS-FFS-----SDFGLP--DF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEES---------SSSSTTHHHCH-TTTT---BSSS-CCT-----GGSS----CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeC---------CCCCCCeeEEeCCCCc--cccCc-ccc-----ccccCC--cc
Confidence 7999999999999999999999 999993 5579999875321110 00000 000 000000 00
Q ss_pred CCCChHHHHHHH----HHHHHHHHHHHHHHHHhCCeEEEEe-EEEEe----cCCEEEE-cCEEEEeCeEEEcCCC--CCC
Q 008839 155 PQHDWSTLIANK----NAELQRLTGIYKNILINAGITLIEG-RGKIV----DPHTVDV-DGKLYSARHILISVGG--RPF 222 (551)
Q Consensus 155 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i----~~~~v~v-~g~~~~~d~lviAtG~--~p~ 222 (551)
..........+. ....+.+...++.+.++.++++..+ ++..+ +.+.+++ +++.+.+|+||+|||. .|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 62 ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR 141 (203)
T ss_dssp CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB-
T ss_pred cccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC
Confidence 011111110000 0011222334444555556654433 22222 2345666 5568999999999994 889
Q ss_pred CCCCCC-C-CceecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008839 223 IPDIPG-S-EYAIDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 223 ~p~i~g-~-~~~~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.|+++| . ...+++.++.+... .+++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus 142 ~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 142 IPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp --S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ccccccccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 999999 3 23455555544332 368999999999999999999999999999999874
No 88
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.71 E-value=1.5e-16 Score=169.09 Aligned_cols=276 Identities=21% Similarity=0.299 Sum_probs=172.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
-++|.|||+|||||+||-.|-+.|+-|+++|+ .+..||..- +| +|
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer---------~dr~ggll~-yg-ip------------------------ 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYER---------SDRVGGLLM-YG-IP------------------------ 1829 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEe---------cCCcCceee-ec-CC------------------------
Confidence 47899999999999999999999999999993 667777642 11 22
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCCC
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGSE 230 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~~ 230 (551)
....++. .+ +...+++.+.||+|+.++ .++.+ +..|+-.-.+|.+|+|+|+. |+-.++||-+
T Consensus 1830 ----nmkldk~------vv----~rrv~ll~~egi~f~tn~--eigk~-vs~d~l~~~~daiv~a~gst~prdlpv~grd 1892 (2142)
T KOG0399|consen 1830 ----NMKLDKF------VV----QRRVDLLEQEGIRFVTNT--EIGKH-VSLDELKKENDAIVLATGSTTPRDLPVPGRD 1892 (2142)
T ss_pred ----ccchhHH------HH----HHHHHHHHhhCceEEeec--ccccc-ccHHHHhhccCeEEEEeCCCCCcCCCCCCcc
Confidence 1111111 11 112245667799998863 22222 44456666899999999965 7777888854
Q ss_pred c--ee--------------cch-hhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCc---------cCCC
Q 008839 231 Y--AI--------------DSD-AALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKK---------VLRG 283 (551)
Q Consensus 231 ~--~~--------------~~~-~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~---------~l~~ 283 (551)
. +. ++. +.......+|+|+|||||..|.++-..-.++|++ |.-++--+. ++|.
T Consensus 1893 ~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpq 1972 (2142)
T KOG0399|consen 1893 LKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQ 1972 (2142)
T ss_pred ccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCcc
Confidence 1 11 000 1112334588999999999999988777777763 333332221 1221
Q ss_pred CCH----HHH-HHHHHHHHhcCcEEEc-----------------CcccEEE--EEcCCceEEEE-ECC-CeEEEeeEEEE
Q 008839 284 FDE----DIR-DFVAEQMSLRGIEFHT-----------------EESPQAI--LKSTDGSLSVK-TNK-GTVDGFSHVMF 337 (551)
Q Consensus 284 ~~~----~~~-~~l~~~l~~~Gv~i~~-----------------~~~v~~i--~~~~~~~~~V~-~~~-G~~i~~d~vi~ 337 (551)
++. ++. ...++.. |-..++ +-+..++ +.++.++..+. ..+ .+.++||.||+
T Consensus 1973 wprvfrvdygh~e~~~~~---g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~l 2049 (2142)
T KOG0399|consen 1973 WPRVFRVDYGHAEAKEHY---GSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVIL 2049 (2142)
T ss_pred CceEEEeecchHHHHHHh---CCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeee
Confidence 111 111 1122211 111111 1111111 22333323222 222 24689999999
Q ss_pred ecCcCCCCCCCCccccCeeecCCCCeEeC-CCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHH
Q 008839 338 ATGRRPNTKNLGLEKVGVKMTKNGAIEVD-EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTL 403 (551)
Q Consensus 338 a~G~~p~~~~l~l~~~gl~~~~~G~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i 403 (551)
|.|+......+ .+..+++.|+++-|.+- +.+.|++++|||+|||-.+..+...|+++||-+|+.+
T Consensus 2050 amgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2050 AMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred eccccCcchhh-hhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 99996544332 67778888988877654 5678999999999999998888888999999998764
No 89
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.71 E-value=1.9e-17 Score=166.48 Aligned_cols=251 Identities=17% Similarity=0.246 Sum_probs=128.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.||+++||.||++|+.|..|.+.+ .++.++| +.+...+.-|+.....-+....+ +++- ..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e------~~~~f~Wh~gmll~~~~~q~~fl----------~Dlv---t~ 62 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLE------RRPSFSWHPGMLLPGARMQVSFL----------KDLV---TL 62 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEE------S-SS--TTGGG--SS-B-SS-TT----------SSSS---TT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEe------cCCCCCcCCccCCCCCccccccc----------cccC---cC
Confidence 489999999999999999999965 8999999 23334444444322111111111 1100 00
Q ss_pred cCCCCCCChHHHHHHHHHHHH------------HHHHHHHHHHHhCC--eEEEEeEEEEec----C----CEEEE-----
Q 008839 151 YGTEPQHDWSTLIANKNAELQ------------RLTGIYKNILINAG--ITLIEGRGKIVD----P----HTVDV----- 203 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--v~~~~~~~~~i~----~----~~v~v----- 203 (551)
......+.+-.+........+ .+.++.....++.. +.+ ..++..+. . ..|.+
T Consensus 63 ~~P~s~~sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~-~~~V~~I~~~~~~~~~~~~V~~~~~~g 141 (341)
T PF13434_consen 63 RDPTSPFSFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRY-GSEVTSIEPDDDGDEDLFRVTTRDSDG 141 (341)
T ss_dssp T-TTSTTSHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEE-SEEEEEEEEEEETTEEEEEEEEEETTS
T ss_pred cCCCCcccHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEE-CCEEEEEEEecCCCccEEEEEEeecCC
Confidence 011122333333322221111 11111211222222 222 22333332 1 34555
Q ss_pred cCEEEEeCeEEEcCCCCCCCCCC----CCCCceecchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCC--eEEEE
Q 008839 204 DGKLYSARHILISVGGRPFIPDI----PGSEYAIDSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTS--EVHVF 274 (551)
Q Consensus 204 ~g~~~~~d~lviAtG~~p~~p~i----~g~~~~~~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv 274 (551)
+++.+.++.||+|||..|.+|+. ++.+.++++.++... ....++|+|||+|.+|.|++..|.+.+. +|+++
T Consensus 142 ~~~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i 221 (341)
T PF13434_consen 142 DGETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWI 221 (341)
T ss_dssp -EEEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEE
T ss_pred CeeEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEE
Confidence 35689999999999999998863 233556666665543 3457899999999999999999988764 89999
Q ss_pred eecCccCCC---------CCHHHHHH-------------------------------HHH------HHHhcCcEEEcCcc
Q 008839 275 IRQKKVLRG---------FDEDIRDF-------------------------------VAE------QMSLRGIEFHTEES 308 (551)
Q Consensus 275 ~~~~~~l~~---------~~~~~~~~-------------------------------l~~------~l~~~Gv~i~~~~~ 308 (551)
.|++.+.+. ++++..+. +.+ ...+..++++.+++
T Consensus 222 ~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~ 301 (341)
T PF13434_consen 222 SRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTE 301 (341)
T ss_dssp ESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEE
T ss_pred ECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCE
Confidence 998876432 23333222 111 11234578999999
Q ss_pred cEEEEEcCCceEEEEECC-----CeEEEeeEEEEecCcC
Q 008839 309 PQAILKSTDGSLSVKTNK-----GTVDGFSHVMFATGRR 342 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~~~-----G~~i~~d~vi~a~G~~ 342 (551)
|+.++.++++.+.+.+.+ ..++++|.||+|||++
T Consensus 302 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 302 VTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred EEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 999998885337777654 2368999999999975
No 90
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.70 E-value=2e-15 Score=147.55 Aligned_cols=325 Identities=16% Similarity=0.166 Sum_probs=188.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhh------hHh
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFS------HEF 141 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~------~~~ 141 (551)
|+..+|++.||-||+.|+.|+.|.+.+ .+++.+| +.+...+..|+..-.--+...++-...... .++
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLe------rkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFL 75 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLE------RKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFL 75 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEe------cCCCCCcCCCcccCCccccccchhhhccccCCCCchHHH
Confidence 445699999999999999999999855 7899999 333455666665432222211111110000 000
Q ss_pred hhccCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH--hCCeEEEEeEEEEecC--C-E--EEE-cCEEEEeCeE
Q 008839 142 DESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILI--NAGITLIEGRGKIVDP--H-T--VDV-DGKLYSARHI 213 (551)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~i~~--~-~--v~v-~g~~~~~d~l 213 (551)
..+.+.+-- ...+.++..... +.+...+..|....+. +.|-++..- ..++. . . +.. ++..+.++.|
T Consensus 76 NYL~~h~RL---y~Fl~~e~f~i~-R~Ey~dY~~Waa~~l~~~rfg~~V~~i--~~~~~d~~~~~~~~t~~~~~y~ar~l 149 (436)
T COG3486 76 NYLHEHGRL---YEFLNYETFHIP-RREYNDYCQWAASQLPSLRFGEEVTDI--SSLDGDAVVRLFVVTANGTVYRARNL 149 (436)
T ss_pred HHHHHcchH---hhhhhhhccccc-HHHHHHHHHHHHhhCCccccCCeeccc--cccCCcceeEEEEEcCCCcEEEeeeE
Confidence 000000000 000111111111 1222233333333332 112222110 11221 1 1 112 5668999999
Q ss_pred EEcCCCCCCCCC----CCCCCceecchhhhcCC-C--CCCeEEEEcCcHHHHHHHHHHHhC----CCeEEEEeecCccCC
Q 008839 214 LISVGGRPFIPD----IPGSEYAIDSDAALDLP-S--KPEKIAIVGGGYIALEFAGIFSGL----TSEVHVFIRQKKVLR 282 (551)
Q Consensus 214 viAtG~~p~~p~----i~g~~~~~~~~~~~~~~-~--~~~~vvViG~G~~g~e~a~~l~~~----g~~Vtlv~~~~~~l~ 282 (551)
||.+|.+|.+|+ +++ +.++++.++.+.. + ..++|.|||+|.+|.|+-..|... ..++.++.|+..++|
T Consensus 150 Vlg~G~~P~IP~~f~~l~~-~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p 228 (436)
T COG3486 150 VLGVGTQPYIPPCFRSLIG-ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLP 228 (436)
T ss_pred EEccCCCcCCChHHhCcCc-cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCc
Confidence 999999999995 334 3466555555322 2 234599999999999999887654 346888999988765
Q ss_pred C---------CCHHHHHHH-----------------------------------HHHH--HhcCcEEEcCcccEEEEEcC
Q 008839 283 G---------FDEDIRDFV-----------------------------------AEQM--SLRGIEFHTEESPQAILKST 316 (551)
Q Consensus 283 ~---------~~~~~~~~l-----------------------------------~~~l--~~~Gv~i~~~~~v~~i~~~~ 316 (551)
. |.|++.+.+ .+.+ .+..+.++.+++|+.++..+
T Consensus 229 ~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G 308 (436)
T COG3486 229 MDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAG 308 (436)
T ss_pred cccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCC
Confidence 4 233333221 1111 24578899999999999988
Q ss_pred CceEEEEEC-----CCeEEEeeEEEEecCcCCCCC-CCCccccCeeecCCCCeEeCCCCCCC-----CCcEEEeCcCCCC
Q 008839 317 DGSLSVKTN-----KGTVDGFSHVMFATGRRPNTK-NLGLEKVGVKMTKNGAIEVDEYSGTA-----VPSIWAVGDVTDR 385 (551)
Q Consensus 317 ~~~~~V~~~-----~G~~i~~d~vi~a~G~~p~~~-~l~l~~~gl~~~~~G~i~vd~~~~t~-----~~~vya~GD~~~~ 385 (551)
++.+.+.+. +.+++++|.||+|||++.... ++..-...+..+++|...|++..+.. .-.||+.|-+...
T Consensus 309 ~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 309 DGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred CceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 775666553 234789999999999985543 53222224667888999999876532 1369999987764
Q ss_pred -----CCChHHHHHhHHHHHHHHcCCC
Q 008839 386 -----INLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 386 -----~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
+.+.-.|.+.+.+ .+.++|..
T Consensus 389 HGig~pdLsl~a~Raa~I-~~~L~g~~ 414 (436)
T COG3486 389 HGIGAPDLSLGAWRAAVI-LNSLLGRE 414 (436)
T ss_pred cccCCccchHHHHHHHHH-HHHHhCcC
Confidence 4455567776655 45566644
No 91
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=2.4e-15 Score=154.46 Aligned_cols=295 Identities=20% Similarity=0.207 Sum_probs=166.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCc-----c-hHHHHHhhhhhhHhhhc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCV-----P-KKLLVYASKFSHEFDES 144 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~-----p-~~~l~~~~~~~~~~~~~ 144 (551)
...+|+|||||+|||.+|+.|.+.|++|+++|+ ...+||.|...--. + .+.+ ....+.....+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr---------~~~iGGlW~y~~~~~~~~ss~Y~~l--~tn~pKe~~~~ 73 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFER---------TDDIGGLWKYTENVEVVHSSVYKSL--RTNLPKEMMGY 73 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEe---------cCCccceEeecCcccccccchhhhh--hccCChhhhcC
Confidence 357999999999999999999999999999994 78899999865111 1 1111 11223344455
Q ss_pred cCCCcccCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe--EEEEec--CCEEEE-cC----EEEEeCeEE
Q 008839 145 NGFGWKYGTEPQ-HDWSTLIANKNAELQRLTGIYKNILINAGITLIEG--RGKIVD--PHTVDV-DG----KLYSARHIL 214 (551)
Q Consensus 145 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~i~--~~~v~v-~g----~~~~~d~lv 214 (551)
+.|.+....... .+..++.++...+.+.+ --..-+++-.. ++..++ .+.+.. +. +..-||.|+
T Consensus 74 ~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F-------~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~Vv 146 (448)
T KOG1399|consen 74 SDFPFPERDPRYFPSHREVLEYLRDYAKHF-------DLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVV 146 (448)
T ss_pred CCCCCcccCcccCCCHHHHHHHHHHHHHhc-------ChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEE
Confidence 555444321111 22223333333222221 11111222221 223333 455555 21 577899999
Q ss_pred EcCCCC--CCCCCCCCC--C----ceecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCC
Q 008839 215 ISVGGR--PFIPDIPGS--E----YAIDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD 285 (551)
Q Consensus 215 iAtG~~--p~~p~i~g~--~----~~~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~ 285 (551)
+|||-. |++|.++|. + .++++.+....+. ..|+|+|||.|.+|+|++..+.....+|++..+ ........
T Consensus 147 VctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~ 225 (448)
T KOG1399|consen 147 VCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEP 225 (448)
T ss_pred EcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccccc
Confidence 999965 888888883 2 2455555554332 468999999999999999999988888887765 10000000
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEe
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v 365 (551)
.. ....++..+. .|....+++ .+.+.++....+|.+|+|||+.=...++ +..+ .+.+
T Consensus 226 ~~--------~~~~~~~~~~--~i~~~~e~~----~~~~~~~~~~~~D~ii~ctgy~y~fPfl--~~~~-------~~~~ 282 (448)
T KOG1399|consen 226 PE--------ILGENLWQVP--SIKSFTEDG----SVFEKGGPVERVDRIIFCTGYKYKFPFL--ETLG-------LGTV 282 (448)
T ss_pred cc--------eeecceEEcc--ccccccCcc----eEEEcCceeEEeeeEEEeeeeEeeccee--ccCC-------ceee
Confidence 00 0011222221 144443221 1445566678899999999997666653 2211 1222
Q ss_pred CCCC-----CCCCCcEEEeCcCCCCC----CChHHHHHhHHHHHHHHcCCC
Q 008839 366 DEYS-----GTAVPSIWAVGDVTDRI----NLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 366 d~~~-----~t~~~~vya~GD~~~~~----~~~~~A~~~g~~aa~~i~g~~ 407 (551)
++.. ..-.|..++-|...... ...+....|++.++..+.|..
T Consensus 283 ~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~ 333 (448)
T KOG1399|consen 283 RDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRL 333 (448)
T ss_pred ccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCC
Confidence 2222 11234444444222211 123456678888888888764
No 92
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.59 E-value=1.1e-13 Score=142.20 Aligned_cols=254 Identities=15% Similarity=0.154 Sum_probs=144.1
Q ss_pred ccEEEECCChHHHHHHHHHH-hCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008839 73 FDLFTIGAGSGGVRASRFAA-NFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~-~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
.+|+||||||||++||.+|. +.|++|+|+|+ ...+||.+. .|..|.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk---------~p~pgGLvR-~GVaPd----------------------- 86 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEK---------LPNPYGLIR-YGVAPD----------------------- 86 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEec---------CCCCccEEE-EeCCCC-----------------------
Confidence 57999999999999999865 57999999993 556677653 333331
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC----
Q 008839 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP---- 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~---- 227 (551)
.. ..+.+...+...+...+++++.+ +. ++ ..+.++.-.-.||.||+|+|+.+.-++++
T Consensus 87 -------h~--------~~k~v~~~f~~~~~~~~v~f~gn-v~-VG-~Dvt~eeL~~~YDAVIlAtGA~~l~ipi~~~~~ 148 (506)
T PTZ00188 87 -------HI--------HVKNTYKTFDPVFLSPNYRFFGN-VH-VG-VDLKMEELRNHYNCVIFCCGASEVSIPIGQQDE 148 (506)
T ss_pred -------Cc--------cHHHHHHHHHHHHhhCCeEEEee-eE-ec-CccCHHHHHhcCCEEEEEcCCCCCCCCcccccc
Confidence 00 11222223333344557777632 11 11 11222222348999999999886543311
Q ss_pred ------CC------Cceecchhhh-------------cCC------CCCCeEEEEcCcHHHHHHHHHH------------
Q 008839 228 ------GS------EYAIDSDAAL-------------DLP------SKPEKIAIVGGGYIALEFAGIF------------ 264 (551)
Q Consensus 228 ------g~------~~~~~~~~~~-------------~~~------~~~~~vvViG~G~~g~e~a~~l------------ 264 (551)
|. ..+++..++. ... ...++++|||.|++++++|..|
T Consensus 149 ~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI 228 (506)
T PTZ00188 149 DKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDI 228 (506)
T ss_pred eeeeccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCC
Confidence 21 1122221111 110 1246899999999999999974
Q ss_pred --------HhCCC-eEEEEeecCcc--------------CCC----C-CHH-----------------------HHHHHH
Q 008839 265 --------SGLTS-EVHVFIRQKKV--------------LRG----F-DED-----------------------IRDFVA 293 (551)
Q Consensus 265 --------~~~g~-~Vtlv~~~~~~--------------l~~----~-~~~-----------------------~~~~l~ 293 (551)
++.+. +|+++.|+... ++. + +.+ ..+.+.
T Consensus 229 ~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~ 308 (506)
T PTZ00188 229 SSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVK 308 (506)
T ss_pred cHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHH
Confidence 23333 68888887542 111 0 000 111222
Q ss_pred HHHH----------hcCcEEEcCcccEEEEEcCCceEEEEEC-----------CCe--EEEeeEEEEecCcCCCCCCCCc
Q 008839 294 EQMS----------LRGIEFHTEESPQAILKSTDGSLSVKTN-----------KGT--VDGFSHVMFATGRRPNTKNLGL 350 (551)
Q Consensus 294 ~~l~----------~~Gv~i~~~~~v~~i~~~~~~~~~V~~~-----------~G~--~i~~d~vi~a~G~~p~~~~l~l 350 (551)
+..+ .+-+.+++.....+|..+++.+..|++. .|+ +++||+|+-|+|++...-
T Consensus 309 ~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~---- 384 (506)
T PTZ00188 309 NYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF---- 384 (506)
T ss_pred HHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC----
Confidence 2221 1345677777788887522332334332 233 689999999999987642
Q ss_pred cccCeeecCCCCeEeCCCCCC--CCCcEEEeCcCCCCC
Q 008839 351 EKVGVKMTKNGAIEVDEYSGT--AVPSIWAVGDVTDRI 386 (551)
Q Consensus 351 ~~~gl~~~~~G~i~vd~~~~t--~~~~vya~GD~~~~~ 386 (551)
. ++.+|.+ +.. ...+. ..|++|++|-+-.+|
T Consensus 385 ~--g~pFd~~--~~n-~~grv~~~~~g~Y~~GWiKrGP 417 (506)
T PTZ00188 385 A--ENLYNQS--VQM-FKEDIGQHKFAIFKAGWFDKGP 417 (506)
T ss_pred C--CCCcccc--CCC-CCCcccCCCCCcEEeeecCcCC
Confidence 1 3444422 221 11221 379999999998765
No 93
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.57 E-value=8.6e-14 Score=137.99 Aligned_cols=192 Identities=17% Similarity=0.254 Sum_probs=124.7
Q ss_pred EEEeCeEEEcCCCCCCCCCCC---C---CCceecchhhhcC----------------CCCCCeEEEE---cCcH------
Q 008839 207 LYSARHILISVGGRPFIPDIP---G---SEYAIDSDAALDL----------------PSKPEKIAIV---GGGY------ 255 (551)
Q Consensus 207 ~~~~d~lviAtG~~p~~p~i~---g---~~~~~~~~~~~~~----------------~~~~~~vvVi---G~G~------ 255 (551)
++....+|+|||-.+.-+.-. | ...++|.-++.++ .+.|++|+.| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~ 377 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP 377 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence 578889999999766433210 1 1234443333221 1247888765 5433
Q ss_pred --------HHHHHHHHHHhC--CCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC
Q 008839 256 --------IALEFAGIFSGL--TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN 325 (551)
Q Consensus 256 --------~g~e~a~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~ 325 (551)
.++-.|+..++. ..+|+++.-.-+ .+...+.+.+.+.-++.||+++.+ ++.+|....++.+.|+.+
T Consensus 378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR---afG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~V~~E 453 (622)
T COG1148 378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR---AFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLIVRVE 453 (622)
T ss_pred hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee---ccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeEEEEE
Confidence 122334444444 456777665433 234444555555555889999998 888888777664566554
Q ss_pred C---Ce--EEEeeEEEEecCcCCCCCCCC-ccccCeeecCCCCeEeC-CCC---CCCCCcEEEeCcCCCCCCChHHHHHh
Q 008839 326 K---GT--VDGFSHVMFATGRRPNTKNLG-LEKVGVKMTKNGAIEVD-EYS---GTAVPSIWAVGDVTDRINLTPVALME 395 (551)
Q Consensus 326 ~---G~--~i~~d~vi~a~G~~p~~~~l~-l~~~gl~~~~~G~i~vd-~~~---~t~~~~vya~GD~~~~~~~~~~A~~~ 395 (551)
| |+ ++++|+|++++|..|....-. ...+|+..+++|+++.. +.+ +|+.++||.+|-+.+ |+....++.|
T Consensus 454 dTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg-PkdI~~siaq 532 (622)
T COG1148 454 DTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG-PKDIADSIAQ 532 (622)
T ss_pred eccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC-CccHHHHHHH
Confidence 3 33 689999999999998654211 45678999999999877 445 478999999996555 7777888888
Q ss_pred HHHHHHHH
Q 008839 396 GGALAKTL 403 (551)
Q Consensus 396 g~~aa~~i 403 (551)
|..||..+
T Consensus 533 a~aAA~kA 540 (622)
T COG1148 533 AKAAAAKA 540 (622)
T ss_pred hHHHHHHH
Confidence 88877654
No 94
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.49 E-value=1.1e-12 Score=126.52 Aligned_cols=277 Identities=18% Similarity=0.254 Sum_probs=159.2
Q ss_pred ccEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008839 73 FDLFTIGAGSGGVRASRFAAN--FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..|+|||+||||+++|..|.+ .+..|.|+|+ .....|. ..+|..|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek---------~PvPFGL-vRyGVAPD---------------------- 68 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEK---------LPVPFGL-VRYGVAPD---------------------- 68 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeec---------CCcccce-eeeccCCC----------------------
Confidence 479999999999999999998 4689999993 3344443 34444441
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008839 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
.+ ++.+....+...++.....++-+.- + ...+.+..-+-.||.+|+|+|+. ++..+|||.
T Consensus 69 --------Hp--------EvKnvintFt~~aE~~rfsf~gNv~--v-G~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe 129 (468)
T KOG1800|consen 69 --------HP--------EVKNVINTFTKTAEHERFSFFGNVK--V-GRDVSLKELTDNYDAVVLAYGADGDRRLDIPGE 129 (468)
T ss_pred --------Cc--------chhhHHHHHHHHhhccceEEEecce--e-cccccHHHHhhcccEEEEEecCCCCcccCCCCc
Confidence 11 2222223333444444555554310 0 01122233355799999999965 678899996
Q ss_pred C--ceecchhhhcCCC------------CCCeEEEEcCcHHHHHHHHHHHhC----------------------CCeEEE
Q 008839 230 E--YAIDSDAALDLPS------------KPEKIAIVGGGYIALEFAGIFSGL----------------------TSEVHV 273 (551)
Q Consensus 230 ~--~~~~~~~~~~~~~------------~~~~vvViG~G~~g~e~a~~l~~~----------------------g~~Vtl 273 (551)
+ .+++.+.+..+.. -..+|+|||.|.+++++|..|... -.+|++
T Consensus 130 ~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~l 209 (468)
T KOG1800|consen 130 ELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKL 209 (468)
T ss_pred ccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEE
Confidence 4 4666555544321 256899999999999999877421 136888
Q ss_pred EeecCccCCCCC--------------------------------------HHHHHHHHHHHHhc---------CcE---E
Q 008839 274 FIRQKKVLRGFD--------------------------------------EDIRDFVAEQMSLR---------GIE---F 303 (551)
Q Consensus 274 v~~~~~~l~~~~--------------------------------------~~~~~~l~~~l~~~---------Gv~---i 303 (551)
+.|+..+-..|. +++.+.+.+.++++ +.+ +
T Consensus 210 vgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~ 289 (468)
T KOG1800|consen 210 VGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHL 289 (468)
T ss_pred EeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHH
Confidence 888764311110 11222233333321 111 1
Q ss_pred EcCcccEEEEEcCCce----EEE---------EECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCC
Q 008839 304 HTEESPQAILKSTDGS----LSV---------KTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~----~~V---------~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
.+.-....|..+.+++ +.+ .+.+-++++|+.++.++|+....-. .++..|.+-++.-|.+.+
T Consensus 290 ~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~-----~gipFd~~kgvv~n~~Gr 364 (468)
T KOG1800|consen 290 RFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD-----SGIPFDDKKGVVPNVNGR 364 (468)
T ss_pred HHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeeccceeEeeeeecccccC-----CCCCcccccCcccCCCce
Confidence 1111122233321110 111 1122247899999999999765421 144455444444444443
Q ss_pred C----CCCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHcC
Q 008839 371 T----AVPSIWAVGDVTDRI-NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 371 t----~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~g 405 (551)
. -.|++|++|-+..+| .....+++++..+++.|..
T Consensus 365 V~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~q 404 (468)
T KOG1800|consen 365 VLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQ 404 (468)
T ss_pred EEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHHH
Confidence 2 349999999999865 4455667778777777763
No 95
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.48 E-value=5e-13 Score=105.02 Aligned_cols=80 Identities=34% Similarity=0.655 Sum_probs=76.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK 326 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~ 326 (551)
+++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|+++||++++++.+++++.++++ ++|+++|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~~~ 79 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTLED 79 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEEec
Confidence 689999999999999999999999999999999998899999999999999999999999999999999888 6698888
Q ss_pred C
Q 008839 327 G 327 (551)
Q Consensus 327 G 327 (551)
|
T Consensus 80 g 80 (80)
T PF00070_consen 80 G 80 (80)
T ss_dssp S
T ss_pred C
Confidence 6
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.43 E-value=4.3e-12 Score=124.84 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..++.+.+.+.+++.||+++++++|.+++.++.+ ..+.+.+|+++.||.+|+|+|-..
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEcCCCCEEEccEEEEecCCcC
Confidence 4567889999999999999999999999988755 889999998899999999999443
No 97
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.36 E-value=2.2e-10 Score=116.59 Aligned_cols=136 Identities=10% Similarity=0.095 Sum_probs=93.1
Q ss_pred hCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcC
Q 008839 266 GLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRR 342 (551)
Q Consensus 266 ~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~ 342 (551)
..|+.|..+--. .|. ....+.+.+.+.+++.|++++.+++|.++..+++....|.+.++ ..+.+|.+|+|+|..
T Consensus 245 ~~g~~v~E~ptl---PPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 245 ATGLTLCELPTM---PPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHCCCEEeCCCC---CCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 447777655332 233 46778888999999999999999999999877766445666665 379999999999987
Q ss_pred -CCCCC--C-Cccc--cCeee---------------c----CCCCeEeCCCCCC-----CCCcEEEeCcCCCCCCC----
Q 008839 343 -PNTKN--L-GLEK--VGVKM---------------T----KNGAIEVDEYSGT-----AVPSIWAVGDVTDRINL---- 388 (551)
Q Consensus 343 -p~~~~--l-~l~~--~gl~~---------------~----~~G~i~vd~~~~t-----~~~~vya~GD~~~~~~~---- 388 (551)
+.--. + .+.+ .++++ + ..-+|.+|+++|. .++|+||+|-+.+++..
T Consensus 322 ~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~g 401 (419)
T TIGR03378 322 FSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEG 401 (419)
T ss_pred cCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcC
Confidence 32110 0 0000 01111 0 1125889999983 48999999999986421
Q ss_pred --hHHHHHhHHHHHHHHc
Q 008839 389 --TPVALMEGGALAKTLF 404 (551)
Q Consensus 389 --~~~A~~~g~~aa~~i~ 404 (551)
.-+|+..|-.||++|.
T Consensus 402 cG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 402 CGSGVAVSTALHAAEQII 419 (419)
T ss_pred CCchhHHHHHHHHHHhhC
Confidence 2368888888888763
No 98
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.33 E-value=5.8e-12 Score=135.84 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=78.2
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHH-------HHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008839 241 LPSKPEKIAIVGGGYIALEFAGI-------FSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 241 ~~~~~~~vvViG~G~~g~e~a~~-------l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
+...|+.++++|++++++|++.. +.+++.+|++....+..+..+...+...+.+.+++.|+++++++.++++.
T Consensus 156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~ 235 (557)
T PRK07843 156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY 235 (557)
T ss_pred cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence 44567889999999999998865 56667777766555444445677788889999999999999999999998
Q ss_pred EcCCceEEEEEC-CCe--EEEee-EEEEecCc-CCCCCC
Q 008839 314 KSTDGSLSVKTN-KGT--VDGFS-HVMFATGR-RPNTKN 347 (551)
Q Consensus 314 ~~~~~~~~V~~~-~G~--~i~~d-~vi~a~G~-~p~~~~ 347 (551)
.+++.++.|... +++ .+.++ .||+|+|- .+|.++
T Consensus 236 ~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 236 VEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred EeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHH
Confidence 765554445443 443 47785 68887765 444443
No 99
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.32 E-value=1.5e-11 Score=133.39 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=85.2
Q ss_pred chhhhcCCCCCCeEEEEcCcH--HHHHHHHHHHhCCCeEEEEeecCccCCCCC--------------HHHHHHHHHHHHh
Q 008839 235 SDAALDLPSKPEKIAIVGGGY--IALEFAGIFSGLTSEVHVFIRQKKVLRGFD--------------EDIRDFVAEQMSL 298 (551)
Q Consensus 235 ~~~~~~~~~~~~~vvViG~G~--~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~--------------~~~~~~l~~~l~~ 298 (551)
.+++.++...++++.++|+++ ++.+++..+...+.+++++.+...+++.++ ..+...+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 456667777888999999998 899999999999988887766655554322 4566778888899
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEEC--CCe-EEEee-EEEEecCcCCCC
Q 008839 299 RGIEFHTEESPQAILKSTDGSLSVKTN--KGT-VDGFS-HVMFATGRRPNT 345 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G~-~i~~d-~vi~a~G~~p~~ 345 (551)
.|+++++++.|+++..+++.++.|... +++ .+.++ .||+|+|..++.
T Consensus 227 ~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 227 LGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence 999999999999998766554455553 343 47786 799999988754
No 100
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.30 E-value=5.7e-10 Score=112.81 Aligned_cols=197 Identities=16% Similarity=0.149 Sum_probs=106.3
Q ss_pred CccEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHh--------hhhhh-
Q 008839 72 DFDLFTIGAGSGGVRASRFAANF---GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYA--------SKFSH- 139 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~---G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~--------~~~~~- 139 (551)
+++|+|||+|++|+.+|.+|.+. ...|.|+|+ ...+|+...+.---|+..+... ...++
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~---------~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~ 71 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEP---------RPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQD 71 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecc---------ccccCCCccCCCCCchhhhccccccccccCCCCchH
Confidence 37899999999999999999982 123999993 4445555444333332222111 11111
Q ss_pred HhhhccCCCcccCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHhCC---eEEEEeEEEEecCC---E---EEE-cCEEE
Q 008839 140 EFDESNGFGWKYGTEP-QHDWSTLIANKNAELQRLTGIYKNILINAG---ITLIEGRGKIVDPH---T---VDV-DGKLY 208 (551)
Q Consensus 140 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~i~~~---~---v~v-~g~~~ 208 (551)
+.+.+.+.+....... ...+...+....-+-+++...+..++++.. +.+++..+..+... . +.. ++...
T Consensus 72 F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~ 151 (474)
T COG4529 72 FVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSE 151 (474)
T ss_pred HHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCee
Confidence 1111111111100000 001111222222222333333444444433 77777655443221 1 222 77888
Q ss_pred EeCeEEEcCCCCCCCCCC-----CCCC----ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeec
Q 008839 209 SARHILISVGGRPFIPDI-----PGSE----YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQ 277 (551)
Q Consensus 209 ~~d~lviAtG~~p~~p~i-----~g~~----~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~ 277 (551)
.+|-+|+|||..+-.++. +|.. ..+..+.+...+ ...+|+|+|+|..-++....|++.|. +||.+.|+
T Consensus 152 ~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRr 230 (474)
T COG4529 152 IADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRR 230 (474)
T ss_pred eeeEEEEeccCCCCCcchhhhccCCCcceeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccceEEEecc
Confidence 999999999966544332 2221 122222222222 34569999999999999999999876 69999987
Q ss_pred C
Q 008839 278 K 278 (551)
Q Consensus 278 ~ 278 (551)
.
T Consensus 231 G 231 (474)
T COG4529 231 G 231 (474)
T ss_pred c
Confidence 6
No 101
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.30 E-value=2.8e-11 Score=131.17 Aligned_cols=247 Identities=17% Similarity=0.223 Sum_probs=139.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC---CcchHHHHHhhhhhhHhhhccC
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG---CVPKKLLVYASKFSHEFDESNG 146 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~~~~~~~~~~~~ 146 (551)
..++||+|||+|.+|+++|..+++.|++|+|||| ....||.+...+ |+|.+.+...............
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek---------~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 80 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEK---------DPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRT 80 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCccccccCceeecCccHHhhhccccchHHHHHH
Confidence 3469999999999999999999999999999993 345788877654 5676555443332222211111
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCC-
Q 008839 147 FGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIP- 224 (551)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p- 224 (551)
+-.... ....+.+ +.. ...+... ...+++.+ .++++..... . ..+.....-.++|.+...|
T Consensus 81 ~~~~~~-~~~~~~~-l~~---~~~~~s~-~~~~wl~~~~gv~~~~~~~--~---------~d~~~~~~~~~~ggr~~~~~ 143 (581)
T PRK06134 81 YLRHEL-GARYDAA-RID---AFLEAGP-HMVAFFERHTALRFADGNA--I---------PDYHGDTPGAATGGRSLIAA 143 (581)
T ss_pred HHHHHh-CcCCCHH-HHH---HHHhccH-HHHHHHHhcCCceeeecCC--C---------CCCCCCCCCCCCCCCeeccC
Confidence 000000 0011111 111 1111111 11234443 3566532100 0 0011111223455555444
Q ss_pred CCCCCCceecchhhhcCCCCCCeEEEEcCcHHH-HHHHHHHHhCCCeEEEEeecCccCCC--------------CCHHHH
Q 008839 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIA-LEFAGIFSGLTSEVHVFIRQKKVLRG--------------FDEDIR 289 (551)
Q Consensus 225 ~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g-~e~a~~l~~~g~~Vtlv~~~~~~l~~--------------~~~~~~ 289 (551)
+++|.+.. ++...+.+.+.++.++|++.++ .+++..+...+..+.+..+...+++. ....+.
T Consensus 144 ~~~g~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 220 (581)
T PRK06134 144 PFDGRELG---ALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALV 220 (581)
T ss_pred CCChhhhh---HHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHH
Confidence 34443221 3444555566777888888765 67777766665554443332222111 234566
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCCe-EEEe-eEEEEecCcCCCC
Q 008839 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKGT-VDGF-SHVMFATGRRPNT 345 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G~-~i~~-d~vi~a~G~~p~~ 345 (551)
..+.+.+++.|+++++++.|+++..+++.++.|.. .++. .+.+ +.||+|+|...+.
T Consensus 221 ~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 221 ARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccC
Confidence 78888999999999999999998876554444544 3443 4788 9999999987754
No 102
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.23 E-value=4.5e-11 Score=126.38 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=77.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccC--C-----------------CcchHHHH
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLR--G-----------------CVPKKLLV 132 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~--g-----------------~~p~~~l~ 132 (551)
++||||||||.||++||+.|++.|.+|+||||.... .......||..... . |.|.....
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~--~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 78 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK--SNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWN 78 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC--CCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 379999999999999999999999999999953110 00011122321100 0 11111111
Q ss_pred HhhhhhhHhhhccCCCcccCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEe--cCCEE---EEc
Q 008839 133 YASKFSHEFDESNGFGWKYGTEP---QHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIV--DPHTV---DVD 204 (551)
Q Consensus 133 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i--~~~~v---~v~ 204 (551)
...+....+..+..+|+.+.... ...+..........-..+...+.+.+.+.+++++.+.+..+ +...+ .++
T Consensus 79 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~ 158 (466)
T PRK08401 79 VISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLD 158 (466)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEEC
Confidence 12222333344455565543210 11111100000001122333344455667899887765544 22332 236
Q ss_pred CEEEEeCeEEEcCCCCCC
Q 008839 205 GKLYSARHILISVGGRPF 222 (551)
Q Consensus 205 g~~~~~d~lviAtG~~p~ 222 (551)
+..+.++.||+|||+...
T Consensus 159 g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 159 GELLKFDATVIATGGFSG 176 (466)
T ss_pred CEEEEeCeEEECCCcCcC
Confidence 778999999999997553
No 103
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.23 E-value=1.6e-10 Score=118.70 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.++.+.+.+.+++.||+++++++|.+|+.++++...|.+++++.+.+|.||+|+|-.+..
T Consensus 109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSG
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCcc
Confidence 456788889999999999999999999987777688888777889999999999986543
No 104
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.16 E-value=4.2e-10 Score=113.46 Aligned_cols=314 Identities=16% Similarity=0.179 Sum_probs=158.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC-------------------CcchHHHHHh
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG-------------------CVPKKLLVYA 134 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g-------------------~~p~~~l~~~ 134 (551)
||+|||+|.|||++|+.|.+. ++|+|+.|..... ..+....||.-.-.+ |.+...-...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~-~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE-SSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC-ccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 899999999999999999987 9999999533222 233445666653211 4444444455
Q ss_pred hhhhhHhhhccCCCcccCCCCCC--C--------hHHHHHHHHHHHHHHHHHHHHHH-HhCCeEEEEeE-EEE--ecCC-
Q 008839 135 SKFSHEFDESNGFGWKYGTEPQH--D--------WSTLIANKNAELQRLTGIYKNIL-INAGITLIEGR-GKI--VDPH- 199 (551)
Q Consensus 135 ~~~~~~~~~~~~~g~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~--i~~~- 199 (551)
.+-...++.+..+|++++....- . ...+..-....-+.+...+.... +..+|+++.+. +.. +++.
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 56677778888888888764421 1 01110000001112222222222 33689998873 222 2333
Q ss_pred E---EEE--c-C--EEEEeCeEEEcCCCCCCCCC-------CCC--CCce------ecchhhhcCCCCCCeEEEEcCcHH
Q 008839 200 T---VDV--D-G--KLYSARHILISVGGRPFIPD-------IPG--SEYA------IDSDAALDLPSKPEKIAIVGGGYI 256 (551)
Q Consensus 200 ~---v~v--~-g--~~~~~d~lviAtG~~p~~p~-------i~g--~~~~------~~~~~~~~~~~~~~~vvViG~G~~ 256 (551)
. +.+ . + ..+.++.+|+|||.--.+.. ..| +... ..--++.++ .-...-.+ +-.
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQF---HPT~l~~~-~~~ 242 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQF---HPTALYIP-QRR 242 (518)
T ss_pred eEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceee---ccceecCC-CCc
Confidence 2 222 2 2 46788999999995432211 111 1000 000111111 11111111 111
Q ss_pred HHHHHHHHHhCCCeEEEEeecCccCCCC-------CHH-HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe
Q 008839 257 ALEFAGIFSGLTSEVHVFIRQKKVLRGF-------DED-IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT 328 (551)
Q Consensus 257 g~e~a~~l~~~g~~Vtlv~~~~~~l~~~-------~~~-~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~ 328 (551)
..-+.+.++-.|.. -+-....++++.+ +.+ ++..+...+++.|-.+++. +..+..+ . +. +
T Consensus 243 ~~LiSEAVRGEGA~-L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD--~s~~~~~--~-~~------~ 310 (518)
T COG0029 243 AFLISEAVRGEGAI-LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLD--ISHIPGD--F-FE------R 310 (518)
T ss_pred cceeehhhhcCccE-EECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEe--ccCCCch--h-hh------h
Confidence 11122333333432 1223445555432 223 3456677777777666655 2222110 0 00 0
Q ss_pred EEEe-eEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC-----CCChHH----HHHhHHH
Q 008839 329 VDGF-SHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR-----INLTPV----ALMEGGA 398 (551)
Q Consensus 329 ~i~~-d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~-----~~~~~~----A~~~g~~ 398 (551)
.++. .......|..|..+.++.... .---.|+|.||.+.||++|++||+|.|+.. ..++++ +.--|..
T Consensus 311 rFP~I~~~c~~~GiD~~r~~IPV~Pa--aHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~ 388 (518)
T COG0029 311 RFPTIYAACLKAGIDPTREPIPVVPA--AHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKR 388 (518)
T ss_pred hCcHHHHHHHHcCCCcccCccCccch--hheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHH
Confidence 1110 112223355554443221111 111348999999999999999999999974 345554 4555666
Q ss_pred HHHHHcCCC
Q 008839 399 LAKTLFQAE 407 (551)
Q Consensus 399 aa~~i~g~~ 407 (551)
+|++|.+..
T Consensus 389 aA~~i~~~~ 397 (518)
T COG0029 389 AAEDIAGRL 397 (518)
T ss_pred HHHHhhccc
Confidence 777777653
No 105
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.12 E-value=7e-10 Score=118.12 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=37.2
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCC-CC--------CChHHHHHhHHHHHHHHcC
Q 008839 359 KNGAIEVDEYSGTAVPSIWAVGDVTD-RI--------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~-~~--------~~~~~A~~~g~~aa~~i~g 405 (551)
..|+|.||.+.||++||+||+|+|+. .. .....|.-.|++|++++..
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999973 21 1224577889999999874
No 106
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=7.7e-10 Score=125.81 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=37.9
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHcC
Q 008839 360 NGAIEVDEYSGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~g 405 (551)
.|+|.||.+++|++||+||+|||+.. ......|.-.|++|+.++..
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence 47999999999999999999999875 33444678889998888753
No 107
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.10 E-value=4.5e-09 Score=101.78 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEEC-----------CCeEEEeeEEEEecCcCCCCC-CCCcc--
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTN-----------KGTVDGFSHVMFATGRRPNTK-NLGLE-- 351 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~-----------~G~~i~~d~vi~a~G~~p~~~-~l~l~-- 351 (551)
++...+.+..++.|++++.++.|.++..+++ .+..+... +..++.++.||.|+|...... .+ .+
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l-~~~~ 183 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL-ARKG 183 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH-HHHc
Confidence 4566677777889999999999999876555 33334332 224689999999999755432 10 00
Q ss_pred -ccCeeecCCCCeE--------eCCCCCCCCCcEEEeCcCCCC----C---CChHHHHHhHHHHHHHHcC
Q 008839 352 -KVGVKMTKNGAIE--------VDEYSGTAVPSIWAVGDVTDR----I---NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 352 -~~gl~~~~~G~i~--------vd~~~~t~~~~vya~GD~~~~----~---~~~~~A~~~g~~aa~~i~g 405 (551)
..+..+...+..+ |+.+-+ -+|++|++|=++.. | +.--.=..+|+.+|+.++.
T Consensus 184 ~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 184 PELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred CCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 0111111111222 222222 47999999988763 2 1111224678888887764
No 108
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.06 E-value=3.1e-09 Score=102.51 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCC--ceEEEEEC-----------CCeEEEeeEEEEecCcCCCC-CCCCccc
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTD--GSLSVKTN-----------KGTVDGFSHVMFATGRRPNT-KNLGLEK 352 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~~~V~~~-----------~G~~i~~d~vi~a~G~~p~~-~~l~l~~ 352 (551)
++.+.+.+...+.|++++.++.+.++..+++ .+..|.+. +...+.++.||.|||..... .++ .+.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l-~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC-AKK 179 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH-HHH
Confidence 4556667777888999999999999887655 33455543 22478999999999976532 111 111
Q ss_pred cCeeecC-----CCCeEeCC-------CCCCCCCcEEEeCcCCCC----CC--ChHHH-HHhHHHHHHHHcC
Q 008839 353 VGVKMTK-----NGAIEVDE-------YSGTAVPSIWAVGDVTDR----IN--LTPVA-LMEGGALAKTLFQ 405 (551)
Q Consensus 353 ~gl~~~~-----~G~i~vd~-------~~~t~~~~vya~GD~~~~----~~--~~~~A-~~~g~~aa~~i~g 405 (551)
.++.... .+..+.+. +-+--+|++|++|=.+.. |. -...+ ..+|+.+|+.++.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 1111111 11222221 112247999999988763 21 11223 3678888887763
No 109
>PRK08275 putative oxidoreductase; Provisional
Probab=99.06 E-value=2.5e-09 Score=115.65 Aligned_cols=44 Identities=25% Similarity=0.284 Sum_probs=36.2
Q ss_pred CCeEeCCCCCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008839 361 GAIEVDEYSGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 361 G~i~vd~~~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|+|.||++++|++|++||+|||+.. ......|...|++++.++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999753 2334467888999888875
No 110
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.06 E-value=4e-09 Score=100.53 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeE--EEeeEEEEecCcCCCCCCC-----------Ccccc
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV--DGFSHVMFATGRRPNTKNL-----------GLEKV 353 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~--i~~d~vi~a~G~~p~~~~l-----------~l~~~ 353 (551)
.+.+.+.+.+++.|..+..+.+|.+.+-.++++..|.+.+... +.+|..|+|+|.--...+. .++-.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~ 338 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDIL 338 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcccc
Confidence 3456678888999999999999999988877766677777664 5699999999863222110 00000
Q ss_pred Cee----e------cC----CCCeEeCCCCCC-----CCCcEEEeCcCCCCCCC------hHHHHHhHHHHHHHHcC
Q 008839 354 GVK----M------TK----NGAIEVDEYSGT-----AVPSIWAVGDVTDRINL------TPVALMEGGALAKTLFQ 405 (551)
Q Consensus 354 gl~----~------~~----~G~i~vd~~~~t-----~~~~vya~GD~~~~~~~------~~~A~~~g~~aa~~i~g 405 (551)
..+ . .+ .=++.+|+++|. .++|+||||.+.+++.. .-+|+..|..|++.|+.
T Consensus 339 ~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~ 415 (421)
T COG3075 339 QTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAE 415 (421)
T ss_pred cCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence 000 0 00 124888888874 46899999999987421 22577778888877764
No 111
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.02 E-value=2.1e-08 Score=107.97 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||||||+|.||++||+.+++.|.+|+||||
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK 47 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTK 47 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEc
Confidence 368999999999999999999999999999995
No 112
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.01 E-value=4.9e-09 Score=114.14 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=37.4
Q ss_pred CeEeC-------------CCCCCCCCcEEEeCcCCC--CCCChHHHHHhHHHHHHHHc
Q 008839 362 AIEVD-------------EYSGTAVPSIWAVGDVTD--RINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 362 ~i~vd-------------~~~~t~~~~vya~GD~~~--~~~~~~~A~~~g~~aa~~i~ 404 (551)
+|.|| ++++|++|||||+|||++ ...+...+..+|++++.++.
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred EEEecCcccccccccccccccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence 48899 999999999999999985 35677888999999999876
No 113
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=4.8e-09 Score=113.20 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=37.9
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCCCC--------CChHHHHHhHHHHHHHHcC
Q 008839 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRI--------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~~~--------~~~~~A~~~g~~aa~~i~g 405 (551)
..|+|.||++.||++||+||+|++++.. .....|+..|++|++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence 3588999999999999999999997642 1123678899999999874
No 114
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.00 E-value=3.8e-09 Score=113.61 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=37.2
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCC-CC--------CChHHHHHhHHHHHHHHcC
Q 008839 360 NGAIEVDEYSGTAVPSIWAVGDVTD-RI--------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~-~~--------~~~~~A~~~g~~aa~~i~g 405 (551)
.|+|.||.+.||++|++||+|+|+. .. .....|...|++|++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999974 21 2234577889999999864
No 115
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.99 E-value=9.7e-09 Score=111.37 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=37.5
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCC-CC--------CChHHHHHhHHHHHHHHcC
Q 008839 359 KNGAIEVDEYSGTAVPSIWAVGDVTD-RI--------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~-~~--------~~~~~A~~~g~~aa~~i~g 405 (551)
..|+|.||.+.+|++|++||+|||++ .. .....|+..|++|++++..
T Consensus 357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred eCCCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999975 21 1223577889999998864
No 116
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.97 E-value=4e-08 Score=100.32 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
...+.+.+.+.+++.|++++.+++|+++..++++...|.+.+|+ +.+|.||+|+|.....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 46778888999999999999999999999988773449999998 9999999999986544
No 117
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.97 E-value=3.8e-09 Score=113.61 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||||||+|.||++||+.++ .|.+|+||||
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK 39 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITK 39 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEc
Confidence 4689999999999999999996 4999999995
No 118
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.95 E-value=2.9e-08 Score=101.29 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeE-EEeeEEEEecCcCCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV-DGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~-i~~d~vi~a~G~~p~~ 345 (551)
.++...+.+.++++|++++++++|+.|+..+++...+.+.+|++ ++|+.||.|.|.....
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 45678888889999999999999999999888646678888876 9999999999986543
No 119
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.95 E-value=1.1e-08 Score=109.46 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=35.8
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCC-C-C---CC----hHHHHHhHHHHHHHHcC
Q 008839 360 NGAIEVDEYSGTAVPSIWAVGDVTD-R-I---NL----TPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~-~-~---~~----~~~A~~~g~~aa~~i~g 405 (551)
.|+|.||.+.||++|++||+|+|++ . . .+ ...+...|++|++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999974 2 1 12 23567778888888864
No 120
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.93 E-value=6.7e-08 Score=102.58 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
|||+|||||+||+.+|..+++.|.+|+|+|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie 30 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLT 30 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEe
Confidence 699999999999999999999999999999
No 121
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=2.1e-08 Score=108.91 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=30.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+.||||||+|.||++||+.+++.|.+|+||||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence 46999999999999999999999999999995
No 122
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.92 E-value=9.6e-09 Score=111.17 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=37.6
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCC-C-C-------CChHHHHHhHHHHHHHHcC
Q 008839 359 KNGAIEVDEYSGTAVPSIWAVGDVTD-R-I-------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~-~-~-------~~~~~A~~~g~~aa~~i~g 405 (551)
..|+|.+|++.+|++|++||+|+|++ . . .....|...|++|++++..
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999974 2 1 2234678889999998864
No 123
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.91 E-value=7.9e-08 Score=99.81 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|++++++++|.+++.++++ +.|.+.+| ++.+|.||+|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeCEEEECCCcchH
Confidence 4567788889999999999999999999876655 67788777 5999999999998763
No 124
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=1.3e-07 Score=102.43 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=31.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELP 104 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~ 104 (551)
.++||||||+|.||++||+.+++.|.+|+||||.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3589999999999999999999999999999953
No 125
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.91 E-value=9.9e-08 Score=98.68 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+..+.+.+.+.+++.|++++.+++|++++.+++. +.|.+.++ ++.+|.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELL-VTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCcch
Confidence 3456677888888899999999999999876655 66777776 599999999999764
No 126
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=1.8e-07 Score=101.70 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=30.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCC---CcEEEEcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFG---ASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G---~~V~liE~ 103 (551)
.++||+|||||.||++||+.+++.| .+|+||||
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK 39 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 3589999999999999999999998 89999995
No 127
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2.2e-08 Score=90.40 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+-||+|+||||+||+||++|++.|+||+|+|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~ 61 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEe
Confidence 46999999999999999999999999999993
No 128
>PRK09897 hypothetical protein; Provisional
Probab=98.91 E-value=1e-07 Score=101.24 Aligned_cols=181 Identities=12% Similarity=0.023 Sum_probs=88.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhh----------hhhhH
Q 008839 73 FDLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYAS----------KFSHE 140 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~----------~~~~~ 140 (551)
++|+|||||++|+++|.+|.+.+ .+|+|||+ ...+|.-..+...-|+..++... .+.+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp---------~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~W 72 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQ---------ADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEW 72 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEec---------CCCCCcceeecCCCChHHHHhcccccccCCChHHHHHH
Confidence 58999999999999999998854 58999992 23345333322222222222110 00000
Q ss_pred hhh-----ccCCCcccC--CCCCCChHH-HHHHHHHHHHHHHHHHHHHHHhCC--eEEEEe-EEEEec--CCE--EEE-c
Q 008839 141 FDE-----SNGFGWKYG--TEPQHDWST-LIANKNAELQRLTGIYKNILINAG--ITLIEG-RGKIVD--PHT--VDV-D 204 (551)
Q Consensus 141 ~~~-----~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~i~--~~~--v~v-~ 204 (551)
... +..++.... ....+-... +-.+....+ ..+.+.+...| +.++.. ++..+. ... +.. +
T Consensus 73 l~~~~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f----~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~ 148 (534)
T PRK09897 73 LQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQF----LRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ 148 (534)
T ss_pred hhhhhHHHHHhcCCcceeecCCccCCeecchHHHHHHH----HHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC
Confidence 000 001111100 000011111 111122222 22223344445 566544 455543 222 333 3
Q ss_pred -CEEEEeCeEEEcCCCCCCCCCCCCCC-ceecchhhhcC-CCCCCeEEEEcCcHHHHHHHHHHHhC
Q 008839 205 -GKLYSARHILISVGGRPFIPDIPGSE-YAIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFSGL 267 (551)
Q Consensus 205 -g~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~-~~~~~~vvViG~G~~g~e~a~~l~~~ 267 (551)
+..+.+|+||+|||..+..+. ++.. ++.+....... ...+.+|+|+|.|.++++++..|...
T Consensus 149 gg~~i~aD~VVLAtGh~~p~~~-~~~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 149 DLPSETFDLAVIATGHVWPDEE-EATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCeEEEcCEEEECCCCCCCCCC-hhhccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 467899999999996432111 1111 11111111111 11258999999999999999888755
No 129
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.91 E-value=1.1e-07 Score=103.48 Aligned_cols=30 Identities=37% Similarity=0.511 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
||||||+|.||++||+.+++.|.+|+||||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK 30 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK 30 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 899999999999999999999999999995
No 130
>PLN02815 L-aspartate oxidase
Probab=98.90 E-value=1.7e-08 Score=109.05 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=30.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||||||+|.|||+||+.+++.| +|+||||
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK 59 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITK 59 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEEC
Confidence 4689999999999999999999999 9999995
No 131
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.89 E-value=6.2e-08 Score=104.44 Aligned_cols=61 Identities=28% Similarity=0.429 Sum_probs=51.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC---CcchHHHHHhhhhhhHh
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG---CVPKKLLVYASKFSHEF 141 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~~~~~~~ 141 (551)
.++||||||+| +|++||+.+++.|.+|+|||| ...+||+|.+.| |+|.+.+..........
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek---------~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~ 78 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEK---------SSYVGGSTARSGGAFWLPASPVLDEAGAGDTL 78 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEec---------CCCCcCcccCcCCCEecCChHHHHHhCcchhH
Confidence 37999999999 899999999999999999994 557999999988 88988776655444333
No 132
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.89 E-value=5.9e-08 Score=101.45 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-----eEEEeeEEEEecCcCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-----TVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-----~~i~~d~vi~a~G~~p 343 (551)
..+...+.+.+++.|++++.+++|++++.++++ +.+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 355677788889999999999999999876555 55544332 3689999999999864
No 133
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.88 E-value=1.3e-07 Score=100.25 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++.|++++.++.|++++. ++. +.|.+.+| ++.+|.||+|+|....
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEEeCCc-EEECCEEEEccccccc
Confidence 445678888889999999999999999975 333 56778777 4999999999997643
No 134
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.88 E-value=8.3e-08 Score=99.09 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+.+.|++++.+++|+++..++++ +.|.+.+| .+.+|.||+|+|....
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 455666777788899999999999999886665 77888888 5999999999998643
No 135
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.85 E-value=1.3e-08 Score=107.99 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=30.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|||+|||||+||+.||..+++.|.+|+|||
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE 34 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLT 34 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEe
Confidence 46999999999999999999999999999999
No 136
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.85 E-value=3.3e-08 Score=106.92 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCCCCCCCcEEEeCcCCCC--CCChHHHHHhHHHHHHHHc
Q 008839 367 EYSGTAVPSIWAVGDVTDR--INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 367 ~~~~t~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~ 404 (551)
.+.+|++|++||+|||+.. ..++..+..+|.+++.++.
T Consensus 400 ~~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~ 439 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAV 439 (614)
T ss_pred cCCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHH
Confidence 7778999999999999763 3567788888999988875
No 137
>PRK06847 hypothetical protein; Provisional
Probab=98.85 E-value=5.6e-08 Score=100.30 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.++.+.+.+.+++.|++++++++|++++.++++ +.+.+.+|+++.+|.||.|.|..+..
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcCEEEECcCCCcch
Confidence 456777888888889999999999999877665 77888899899999999999998765
No 138
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.83 E-value=3.7e-08 Score=105.35 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=36.0
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCC-CC----C----ChHHHHHhHHHHHHHHcC
Q 008839 360 NGAIEVDEYSGTAVPSIWAVGDVTD-RI----N----LTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~-~~----~----~~~~A~~~g~~aa~~i~g 405 (551)
.|+|.||.+.+|++|++||+|+|+. .. . ....|...|+++++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999973 21 1 123467788999998864
No 139
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.83 E-value=2e-08 Score=110.07 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=30.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+||||||||.||++||+.+++.|.+|+||||
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK 36 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSL 36 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeC
Confidence 58999999999999999999999999999995
No 140
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.80 E-value=8.1e-08 Score=99.74 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.+++|++++.++++ +.|++.+|+++.+|.||.|.|..+..
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDGRRLEAALAIAADGAASTL 171 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeCEEEEecCCCchH
Confidence 45677778888899999999999999887666 67888888889999999999998854
No 141
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.79 E-value=3.3e-08 Score=107.55 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCCCC----C----ChHHHHHhHHHHHHHHcC
Q 008839 360 NGAIEVDEYSGTAVPSIWAVGDVTDRI----N----LTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~~~----~----~~~~A~~~g~~aa~~i~g 405 (551)
.|+|.+|.+.+|++|++||+|+|++.. . ....+...|++|+.++..
T Consensus 370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred CCCeeECCCCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999997532 1 223577788888888753
No 142
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.79 E-value=1.5e-07 Score=98.53 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+-+.+.+.+++.|++++.+++|+++..+++. +.+...+|+++.+|.||.|+|...
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~-v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRDGK-VVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeCCE-EEEEEcCCcEEECCEEEEEeCCCH
Confidence 4456677778899999999999999876555 333345667899999999999854
No 143
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.79 E-value=1.9e-07 Score=97.78 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+...+.+.++++|++++.+++|++++.++++...|++.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 356677888889999999999999999876665345666655 699999999999864
No 144
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.78 E-value=8e-08 Score=95.80 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=82.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc---c--------CCCC-----CHHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK---V--------LRGF-----DEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~---~--------l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + .+.+ +.++...+.+.+++.|+++++ ++|+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997651 1 1222 357778888899999999998 7999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+++.+++. ..|.+.+++++.+|.+|+|+|..|+...
T Consensus 81 ~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 81 KVDLSDRP-FKVKTGDGKEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEecCCe-eEEEeCCCCEEEeCEEEECCCCCcccCC
Confidence 99886654 6788888888999999999999887543
No 145
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.78 E-value=1.1e-07 Score=98.79 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..++.+.+.+.+++.|++++.++.|+++..+++. +.+.+ +++++.+|.||+|+|....
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~-~~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET-SGGEYEADKVILATGGLSY 161 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE-CCcEEEcCEEEECCCCccc
Confidence 4567788888999999999999999999776554 66766 4557999999999998653
No 146
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.77 E-value=8.9e-08 Score=99.61 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+. +++++.++++++++.++++ +.+.+.+|+++.+|.||.|.|..+..
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-eEEEEcCCCEEecCEEEECCCcChHH
Confidence 455666666665 4999999999999876665 77888899889999999999997755
No 147
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.75 E-value=1.2e-07 Score=98.39 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
-+++.+..++.|++++.++++..+..++++.+.....++.++.++.||.|.|.....
T Consensus 98 d~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 98 DKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred hHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 346777788899999999999999988877444455555689999999999986644
No 148
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.72 E-value=1.3e-07 Score=99.01 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|+++++++.++++..+++.++.|... +|+ ++.++.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 45677888999999999999999999999987766666654 555 5789999999998665
No 149
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.72 E-value=6.9e-07 Score=94.47 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHh----cC--cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 286 EDIRDFVAEQMSL----RG--IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~----~G--v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++ .| ++++++++|++|+.++++.+.|.+.+| ++.+|.||+|+|....
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 3567778888888 77 889999999999987555477888888 5999999999997654
No 150
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.71 E-value=7.5e-07 Score=94.71 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCC--eEEEeeEEEEecCcCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKG--TVDGFSHVMFATGRRP 343 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G--~~i~~d~vi~a~G~~p 343 (551)
.+...+.+.+++.|++++++++++++..+++.++.|.. .++ ..+.++.||+|+|...
T Consensus 132 ~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 132 ALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 45666777888899999999999999876555455554 233 3578999999998644
No 151
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.71 E-value=4.4e-07 Score=98.09 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEee-EEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFS-HVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d-~vi~a~G~~p~ 344 (551)
...+...+.+.+++.|+++++++.++++..+++.++.|.. .+|+ .+.++ .||+|+|-..+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 5567778888899999999999999999876655555544 3454 46774 79999987654
No 152
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.71 E-value=2.9e-07 Score=95.35 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEEC-CCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTN-KGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~-~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+.+.+.+.+.+ |+++.+++|+.++.+++. +.+++. +|+++.||.||-|=|.+...
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eEEEEcCCCcEEecCEEEECCCCchHH
Confidence 46777888887776 999999999999998877 568888 99999999999999987643
No 153
>PLN02661 Putative thiazole synthesis
Probab=98.69 E-value=5.7e-07 Score=89.42 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=65.1
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC------C--C------eEEEeeEEEEecCcCCCCCCCC---ccccCe
Q 008839 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN------K--G------TVDGFSHVMFATGRRPNTKNLG---LEKVGV 355 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~------~--G------~~i~~d~vi~a~G~~p~~~~l~---l~~~gl 355 (551)
.+.+++.|++++.++.+.++..+++.+..|.+. + + ..+.++.||+|||..+...-.. +...++
T Consensus 180 ~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~g~ 259 (357)
T PLN02661 180 SKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 259 (357)
T ss_pred HHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhhhcccccCC
Confidence 334556799999999999998776654455431 1 1 2589999999999765321110 111222
Q ss_pred ee--cCCCCeEeCC-------CCCCCCCcEEEeCcCCCC----C--CChHHH-HHhHHHHHHHHcC
Q 008839 356 KM--TKNGAIEVDE-------YSGTAVPSIWAVGDVTDR----I--NLTPVA-LMEGGALAKTLFQ 405 (551)
Q Consensus 356 ~~--~~~G~i~vd~-------~~~t~~~~vya~GD~~~~----~--~~~~~A-~~~g~~aa~~i~g 405 (551)
.. ..-...+++. +-+--+|++|++|=.+.. | .-...+ ...|+.+|+.++.
T Consensus 260 ~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 260 IDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred ccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 10 0011222221 112247999999987762 2 112223 4678888888774
No 154
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.68 E-value=2.6e-07 Score=92.55 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHhCCCeEEEEe-ecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 263 IFSGLTSEVHVFI-RQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 263 ~l~~~g~~Vtlv~-~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.+...|+...++. +.+++-...-+.+.+.+.+.+++.|++++++++|.+|+..++....|.+.+|+++++|.||+|+|+
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 3445566555443 334444446778899999999999999999999999998877667789999999999999999999
Q ss_pred CCCCC
Q 008839 342 RPNTK 346 (551)
Q Consensus 342 ~p~~~ 346 (551)
.....
T Consensus 229 sg~dw 233 (486)
T COG2509 229 SGRDW 233 (486)
T ss_pred chHHH
Confidence 87654
No 155
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.68 E-value=6.3e-07 Score=93.53 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.++++++++.++++ +.|.+.+|+++.+|.||.|.|.....
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCCchh
Confidence 34566777778889999999999999887766 77888899889999999999997754
No 156
>PRK09126 hypothetical protein; Provisional
Probab=98.68 E-value=3.6e-07 Score=94.91 Aligned_cols=56 Identities=25% Similarity=0.222 Sum_probs=44.8
Q ss_pred HHHHHHHH-HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 289 RDFVAEQM-SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+ +..|++++.+++|++++.++++ +.|.+.+|+++.+|.||.|.|..+..
T Consensus 113 ~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 113 RRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTLANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred HHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeCEEEEeCCCCchh
Confidence 33444444 4569999999999999876665 67888899899999999999998765
No 157
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.67 E-value=7e-07 Score=91.07 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--C-CCe--EEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--N-KGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~-~G~--~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++++++++.++.+.++ +.+.+ . +|+ ++++|.||-|-|.+...
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEEEEEEESEEEE-SGTT-HH
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCceeEEEEeeeecccCcccch
Confidence 45677888889999999999999999888776 44333 2 343 68999999999998754
No 158
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.67 E-value=2.6e-07 Score=95.85 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.| ++++ +++++++..++++ +.|++.+|+++.+|.||.|.|.....
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~adG~~S~v 169 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDA-ATLTLADGQVLRADLVVGADGAHSWV 169 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-EEEEECCCCEEEeeEEEEeCCCCchH
Confidence 45667777777877 9999 8899999876665 77888888889999999999997653
No 159
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.66 E-value=1.1e-06 Score=94.19 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCCe--EEEeeEEEEecC-cCCCCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKGT--VDGFSHVMFATG-RRPNTKN 347 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G~--~i~~d~vi~a~G-~~p~~~~ 347 (551)
..+.+.+.+.+++.|+++++++.++++..+++.+..|.. .+++ ++.++.||+|+| +.+|.++
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDM 256 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHH
Confidence 345667778888999999999999999876554334443 4443 588999999998 5666554
No 160
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.66 E-value=1.3e-06 Score=91.49 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECC-C--eEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNK-G--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G--~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+. |+++++++++++++.++++ +.|++.+ + .++.+|.||.|.|.....
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEEeCCCCchh
Confidence 455666666654 7999999999999877665 6677653 2 369999999999987754
No 161
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.65 E-value=5.9e-07 Score=93.78 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+...+.+.+++.|++++.+++|++++.. ++....|.+.+| .+.++.||+|+|...
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 345566778889999999999999999764 344355778887 499999988877654
No 162
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.65 E-value=6.8e-07 Score=92.80 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+++. |++++.+++++++..++++ +.|.+.+|+++.+|.||.|.|.....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeCEEEEeCCCCchh
Confidence 455666666666 9999999999999877665 77888888889999999999998754
No 163
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.65 E-value=1.3e-06 Score=89.72 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+.+. |++++.+++|.+++.. .|.+.+|+ +.+|.||+|+|...+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETG-----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-----eEEeCCCc-EEeCEEEECCCCChh
Confidence 345666777777765 9999999999999642 47777775 789999999998654
No 164
>PRK07588 hypothetical protein; Provisional
Probab=98.64 E-value=3.7e-07 Score=94.78 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+.+.+.+.+. .|++++++++|++++.++++ +.|++++|+++++|.||-|-|.++..-
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG-VRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-EEEEECCCCEEEeCEEEECCCCCccch
Confidence 3444444443 47999999999999887766 778899999899999999999877653
No 165
>PRK08013 oxidoreductase; Provisional
Probab=98.64 E-value=7.5e-07 Score=92.74 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++. |++++.++++++++.++++ +.+++.+|+++.+|.||-|-|.+...
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTLKDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence 3455666666664 8999999999999887766 77888899999999999999988755
No 166
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.64 E-value=1e-07 Score=98.91 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+||+||||||||++||+.|++.|++|+|+|+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~ 31 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLER 31 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEec
Confidence 5899999999999999999999999999994
No 167
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.64 E-value=5.3e-07 Score=95.07 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeecCccC---CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CC--c-eEEEEEC-C
Q 008839 255 YIALEFAGIFSGLTSEVHVFIRQKKVL---RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKS-TD--G-SLSVKTN-K 326 (551)
Q Consensus 255 ~~g~e~a~~l~~~g~~Vtlv~~~~~~l---~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~--~-~~~V~~~-~ 326 (551)
.++.|+..++.++=.++.-+.....+. ..-.+.+...+.+.|+++||+|+++++|++|..+ ++ + +..|... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 478899988877622221111111111 1123677888999999999999999999999875 22 2 3445553 2
Q ss_pred Ce-----EEEeeEEEEecCcCCCCC
Q 008839 327 GT-----VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 327 G~-----~i~~d~vi~a~G~~p~~~ 346 (551)
|+ ..+.|.||+++|.-....
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred CceeEEEecCCCEEEEeCCcCcccc
Confidence 32 246899999999755443
No 168
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.63 E-value=1e-06 Score=94.15 Aligned_cols=49 Identities=33% Similarity=0.460 Sum_probs=37.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
.++||||||||.|||.||..+++.|.+|+|+||-+.. ........||.+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~-rg~t~~a~gG~~ 53 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK-RGHTVAAQGGIN 53 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC-CCchhhhccccc
Confidence 4699999999999999999999999999999953332 122233445554
No 169
>PRK12839 hypothetical protein; Provisional
Probab=98.63 E-value=1.2e-06 Score=94.78 Aligned_cols=56 Identities=30% Similarity=0.477 Sum_probs=45.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC---CcchHHHHH
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG---CVPKKLLVY 133 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~ 133 (551)
+..++||+|||+|.+|++||+.+++.|.+|+|||| ....||++...+ |+|.+.+..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek---------~~~~gg~~~~~~g~~~~~~~~~~~ 63 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK---------ASTCGGATAWSGGWMWTPGNSLAR 63 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCccccccCCeeecCCchhhh
Confidence 34579999999999999999999999999999994 446788887665 567655433
No 170
>PRK10015 oxidoreductase; Provisional
Probab=98.63 E-value=3.2e-07 Score=96.09 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+-+.+.+.+++.|++++.+++|+++..++++...+.. ++.++.+|.||.|.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVNSML 166 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcchhh
Confidence 3445666777889999999999998876555233443 44579999999999986543
No 171
>PRK06834 hypothetical protein; Provisional
Probab=98.62 E-value=8.4e-07 Score=94.41 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|+++++++++++++.++++ +.+++.+|+++.+|.||.|.|.++..
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTG-VDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCCCCc
Confidence 45667778888889999999999999987776 77888888889999999999998854
No 172
>PRK06184 hypothetical protein; Provisional
Probab=98.62 E-value=1e-06 Score=94.57 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCeEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+++.|+++++++++++++.++++ +.+.+ .+++++.+|.||.|.|.+...
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADG-VTARVAGPAGEETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-EEEEEEeCCCeEEEEeCEEEECCCCchHH
Confidence 4566777788889999999999999887776 66666 566789999999999988643
No 173
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.62 E-value=4.1e-07 Score=94.83 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.+++|++++.++++ +.|++.+|+++.+|.||.|.|..+..
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEEcCCCChHH
Confidence 56677788888889999999999999877665 77888899889999999999987754
No 174
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.62 E-value=6.8e-07 Score=92.55 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=45.8
Q ss_pred HHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 289 RDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
...+.+.+++ .|++++.++++++++.++++ +.|++.+|+++.+|.||.|.|..+..
T Consensus 113 ~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 113 QLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-NRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHhCCCeEEECCCceeEEEEcCCe-EEEEECCCCEEEeeEEEEecCCCchh
Confidence 3444454444 47999999999999887776 77899999999999999999998865
No 175
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.60 E-value=6.6e-07 Score=99.16 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++ |++++.+++|+++..++++ +.|.+.+|..+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDG-WQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECCEEEECCCCCcc
Confidence 45677788888888 9999999999999876665 6688888877889999999998754
No 176
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.59 E-value=1.3e-06 Score=91.09 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+ .|++++.+++|++++.++++ +.|.+.+|+++.+|.||.|.|.....
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeCEEEEeCCCCChh
Confidence 34455555555 47999999999999877666 77889999999999999999987654
No 177
>PRK07121 hypothetical protein; Validated
Probab=98.59 E-value=2.1e-06 Score=91.89 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEEC-CCe--EEEe-eEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTN-KGT--VDGF-SHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~-~G~--~i~~-d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|++++++++++++..+++ .+..|... +++ .+.+ +.||+|+|-...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 345677788888999999999999999987643 44455543 332 4778 999999997553
No 178
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.59 E-value=2.6e-06 Score=89.30 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEE-ECCCe--EEEeeEEEEecCcCC
Q 008839 286 EDIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVK-TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~-~~~G~--~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++ .||++++++.++++..+++.++.|. ..+++ .+.++.||+|+|-..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 3556667766664 5999999999999877655544443 33444 588999999999744
No 179
>PLN02463 lycopene beta cyclase
Probab=98.59 E-value=5.3e-07 Score=94.30 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=30.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|||+||||||||+++|..|++.|++|+|||
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE 58 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCID 58 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEec
Confidence 35899999999999999999999999999999
No 180
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.58 E-value=2e-07 Score=92.61 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|||+|||||++|+++|+.|++.|.+|+|||+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~ 31 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEK 31 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 6999999999999999999999999999993
No 181
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.57 E-value=3.7e-07 Score=94.67 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+.+. ++. +++++|++++.++++ +.|++++|+++.+|.||.|.|..+..
T Consensus 112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 112 LLNRALEARVAELPNIT-RFGDEAESVRPREDE-VTVTLADGTTLSARLVVGADGRNSPV 169 (388)
T ss_pred HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-EEEEECCCCEEEEeEEEEecCCCchh
Confidence 3556666767666 455 789999999877766 77888889899999999999997643
No 182
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.56 E-value=1e-06 Score=94.64 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++.|+++++++.|++|..++++.+.|++.+|+++.+|.||++++...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 5678889999999999999999999998776655678899998899999999987643
No 183
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.56 E-value=1.1e-06 Score=94.04 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC----eEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG----TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G----~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+..+++|++++.+++|+++..+++. +.|.+.++ .++.++.||.|+|.+..
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 4556667777788999999999999999876554 56666554 35899999999998653
No 184
>PRK07190 hypothetical protein; Provisional
Probab=98.55 E-value=7.1e-07 Score=94.88 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+...+.+.+++.|++++.+++|++++.++++ +.+.+.+|+++.|+.||.|.|.+...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~v~~~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-CLTTLSNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-eEEEECCCcEEEeCEEEECCCCCHHH
Confidence 4556677788889999999999999987776 66777888889999999999987643
No 185
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.55 E-value=1.6e-06 Score=88.53 Aligned_cols=31 Identities=32% Similarity=0.326 Sum_probs=29.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+.||+|||||++|+.+|+.|++.|++|+|+|
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE 32 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYE 32 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 3689999999999999999999999999999
No 186
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=2.1e-06 Score=94.12 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCC
Q 008839 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~ 344 (551)
+.+.+.+++.||++++++.++++..+++.++.|... +|+ .+.++.||+|||-..+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 455666778899999999999998765555555542 454 5789999999997443
No 187
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.54 E-value=4.5e-07 Score=94.04 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
||+|||||+||+++|..|++.|++|+|||+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~ 30 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEP 30 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Confidence 799999999999999999999999999993
No 188
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.54 E-value=1.5e-06 Score=89.99 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
++.+.+.+.+.+ .|++++.+++|++++.++++ ++|.+.+|+++.+|.||.|.|....
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEeeEEEEecCCChH
Confidence 456677777777 49999999999999877666 7788888888999999999998754
No 189
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.54 E-value=2.8e-06 Score=90.10 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCC--eEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKG--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G--~~i~~d~vi~a~G~~p~ 344 (551)
...+...+.+.++++|++++++++|++++.++++.+.+.+ .+| .++.+|.||+|+|....
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 4567788888889999999999999999876543244543 334 26899999999998653
No 190
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.53 E-value=2.1e-06 Score=88.85 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+.+.| ++++.+++|++++.++++ +.+++.+|+++.+|.||.|.|.....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTLDDGQQLRARLLVGADGANSKV 165 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEECCCCEEEeeEEEEeCCCCCHH
Confidence 45666777777777 999999999999877665 77888999889999999999987643
No 191
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.53 E-value=7.1e-07 Score=95.49 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+++.|++|+++++|++|..++++...|++.+|+++++|.||+++|....
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 56788899999999999999999999987766667788989988999999999887543
No 192
>PRK07045 putative monooxygenase; Reviewed
Probab=98.52 E-value=1.7e-06 Score=89.75 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=46.8
Q ss_pred HHHHHHHHHHH-hcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMS-LRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+.+.+.+. ..|+++++++++++++.++++ .+.|++.+|+++.+|.||-|.|.+...
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMI 167 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHH
Confidence 34556666664 458999999999999887665 346888899999999999999988754
No 193
>PLN02697 lycopene epsilon cyclase
Probab=98.52 E-value=7.4e-07 Score=94.75 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=30.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|||+||||||||+++|..|++.|++|+|||
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe 138 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIG 138 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEec
Confidence 36999999999999999999999999999999
No 194
>PRK08244 hypothetical protein; Provisional
Probab=98.51 E-value=1.7e-06 Score=92.61 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC--CC-eEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN--KG-TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G-~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.++++++++.++++ +.+.+. +| +++.+|.||.|.|.++..
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-VEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-EEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 45566777788889999999999999877766 555543 56 479999999999998754
No 195
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.50 E-value=1.3e-06 Score=90.79 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEE-cCCceEEEEE-CCCe--EEEeeEEEEecCcCCCC
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKT-NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+...+.|+++++++++++++. +++. ..|++ .+|+ ++.+|.||-|-|.+...
T Consensus 106 ~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 106 TRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCCCCch
Confidence 44555556678999999999999976 4444 55666 4664 68999999999998765
No 196
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.50 E-value=3.6e-06 Score=89.31 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008839 286 EDIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+++.| ++++++++|++++.++++.+.+.+ .+|+ ++.++.||+|+|....
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 456777888888886 899999999999876554344543 3353 6899999999998753
No 197
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.50 E-value=1.3e-06 Score=79.84 Aligned_cols=33 Identities=33% Similarity=0.611 Sum_probs=28.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||+||||||+||+||++|++.|+||++||+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~ 48 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIER 48 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEES
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEec
Confidence 368999999999999999999999999999993
No 198
>PRK05868 hypothetical protein; Validated
Probab=98.50 E-value=7.6e-07 Score=91.64 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=41.0
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 298 LRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
..|++++++++|++++.++++ +.|++.+|+++++|.||-|-|.+...
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFDLVIGADGLHSNV 162 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeCEEEECCCCCchH
Confidence 468999999999999876655 78999999999999999999987755
No 199
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.50 E-value=4e-06 Score=90.96 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEE--CCCe-EEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKT--NKGT-VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G~-~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++. |+++++++++++++.++++ +.+.+ .+|+ ++.+|.||.|.|.++..
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG-VTLTVETPDGPYTLEADWVIACDGARSPL 187 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE-EEEEEECCCCcEEEEeCEEEECCCCCcHH
Confidence 3445566666664 7999999999999887766 44444 4554 69999999999988764
No 200
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.50 E-value=5.8e-06 Score=89.28 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CC--eEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KG--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G--~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+..+++|++++++++|+++..++++...|++. ++ .++.+|.||+|+|.+..
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 34556667777889999999999999998776554445542 23 36899999999998653
No 201
>PRK06185 hypothetical protein; Provisional
Probab=98.50 E-value=4.8e-06 Score=86.98 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEE--EECCCe-EEEeeEEEEecCcCCC
Q 008839 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSV--KTNKGT-VDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V--~~~~G~-~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+.+++ .|++++.+++++++..+++.+..| ...+|+ ++.+|.||.|.|....
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence 345566666655 489999999999998776653333 445664 7999999999998764
No 202
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.49 E-value=2.3e-06 Score=88.99 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=45.4
Q ss_pred HHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+ .|++++.+++++++..++++ +.|++.+|..+.+|.||.|.|.....
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS-VRVTLDDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCChhh
Confidence 34555555555 58999999999999876665 77888888889999999999988653
No 203
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.48 E-value=4e-06 Score=90.80 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=32.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|..++||||||+|.|||+||+.+++.|.+|+||||
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK 35 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ 35 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 34579999999999999999999999999999994
No 204
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.48 E-value=2.6e-06 Score=91.15 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---Ce--EEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---GT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G~--~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+..++.|++++.+++|+++..+++. +.|.+.+ |+ ++.++.||.|+|.+..
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 3555566777788899999999999999876544 5565543 43 6899999999998653
No 205
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.48 E-value=1.1e-05 Score=88.23 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEE-cCCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
...+...+.+.+++.||+++.++.++++.. +++.+..|.. .+|+ .+.++.||+|||-..
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 445677777878889999999999999886 3444444543 4564 578999999998654
No 206
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.48 E-value=1.4e-06 Score=90.72 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..++.+.+.+.++..|.+++++++|++|..+++ ..+.|++.+|+++.|+.||......|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 457888888889999999999999999987654 446789999999999999998777765
No 207
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.47 E-value=1.9e-06 Score=89.28 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++.| ..+..++.+..++.+. ....|.+.+|+ +.+|.||+|+|....
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 3467788888999999 5566688888888753 44778888887 999999999997643
No 208
>PRK07233 hypothetical protein; Provisional
Probab=98.46 E-value=8.3e-07 Score=93.48 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
...+.+.+.+.+++.|++++++++|++|+.++++ +.+...+++.+++|.||+|++..
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~-~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG-VTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCc-eEEEEeCCceEECCEEEECCCHH
Confidence 3457788888899999999999999999877665 44444567789999999998754
No 209
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.44 E-value=6.3e-07 Score=90.50 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
||+|||||.||+.||+.+++.|.+|+|+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 79999999999999999999999999994
No 210
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.43 E-value=2.1e-06 Score=90.22 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++|||+||||||||+++|+.|++.|++|+|+|+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 459999999999999999999999999999994
No 211
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.43 E-value=2.5e-07 Score=96.93 Aligned_cols=43 Identities=37% Similarity=0.532 Sum_probs=34.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCC
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGC 125 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~ 125 (551)
||||||||+||++||+.+++.|.+|+|||+ ...+||.....+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~---------~~~lGG~~t~~~~ 43 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEK---------GGFLGGMATSGGV 43 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-S---------SSSSTGGGGGSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEEC---------CccCCCcceECCc
Confidence 899999999999999999999999999994 6778988766554
No 212
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.42 E-value=6.6e-06 Score=86.79 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEE--CCCe--EEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKT--NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~--~~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|++++++++++++..+++ .++.|.. .+++ .+.++.||+|+|....
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 345677788888999999999999999987644 3334443 4454 4689999999996443
No 213
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.42 E-value=2.5e-06 Score=79.76 Aligned_cols=96 Identities=25% Similarity=0.375 Sum_probs=67.8
Q ss_pred EEEcCcHHHHHHHHHHHhCCCe-EEEEeecCccC--------------CC-C----------------------------
Q 008839 249 AIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKVL--------------RG-F---------------------------- 284 (551)
Q Consensus 249 vViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~l--------------~~-~---------------------------- 284 (551)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+. +. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 99999875331 00 0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc--CCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR--RPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~--~p~~ 345 (551)
.+++.+.+++..++.++++.++++|+++..++++ ..|++.+++++.||.||+|+|. .|+.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---SSCSB--
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeeccCCCCc
Confidence 0123355777778889999999999999999888 8999999978999999999997 4443
No 214
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.42 E-value=2.6e-06 Score=82.07 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
....+.++..+++.|+.++.+..+..+.-. ++..+.|.+.+|..+.++.+|+++|.+-+.-
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl 215 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL 215 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence 345677888999999999999998887632 2224789999999999999999999876653
No 215
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.41 E-value=1.4e-06 Score=77.73 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=24.9
Q ss_pred EEECCChHHHHHHHHHHhC-----CCcEEEEc
Q 008839 76 FTIGAGSGGVRASRFAANF-----GASVAICE 102 (551)
Q Consensus 76 vIIGgG~aGl~aA~~l~~~-----G~~V~liE 102 (551)
+|||+|++|++++.+|.+. ..+|+|||
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd 32 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFD 32 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 5999999999999999986 46999999
No 216
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.41 E-value=1.2e-05 Score=84.84 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHH-hcCcEEEcCcccEEEEEc-CCceEEEE---ECCCe--EEEeeEEEEecCcCCC
Q 008839 286 EDIRDFVAEQMS-LRGIEFHTEESPQAILKS-TDGSLSVK---TNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~-~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+. ..|++++++++|++++.+ +++ +.+. +.+++ ++.+|.||+|+|....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 355667777775 459999999999999876 444 5554 34452 6899999999999774
No 217
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=1.9e-05 Score=86.11 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+...+.+.+++.||+++.++.++++..++ +.++.|.. .+|+ .+.++.||+|||-...
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 34566677777788899999999999988765 34455543 4664 5789999999997554
No 218
>PRK11445 putative oxidoreductase; Provisional
Probab=98.39 E-value=8.9e-06 Score=83.07 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=40.3
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCC
Q 008839 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
.+.+ ..+.|++++.++.+++++.++++ +.|.+ .+|+ ++.+|.||.|.|.....
T Consensus 104 ~L~~-~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 104 WLKS-LIPASVEVYHNSLCRKIWREDDG-YHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred HHHH-HHhcCCEEEcCCEEEEEEEcCCE-EEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 3444 34578999999999999877666 66665 5664 68999999999997654
No 219
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.39 E-value=7.5e-06 Score=88.61 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEEC--CC--eEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTN--KG--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G--~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+.+. |+++++++++++++.++++ +.|++. +| +++.+|.||-|.|.+...
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v~v~~~~~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-VTVTLTDADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-EEEEEEcCCCCEEEEEEEEEEecCCCchhH
Confidence 3455566666664 9999999999999988776 666665 56 479999999999997755
No 220
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.39 E-value=1.1e-06 Score=90.38 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 284 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+...+...++..-++...+++++++|++|..+..+ .++.+.+|.++.+|.||+++-.
T Consensus 210 ~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~-~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 210 LRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAG-KTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred cCccHHHHHHHHHHHhhhceeecceeeEEEEcCCc-cEEEEcCCceEEcceEEEcCCH
Confidence 34334433333333444559999999999988555 7788889999999999998643
No 221
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.39 E-value=8.3e-06 Score=84.12 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+.+.+.+.+.+ ++++.+++++++..++++ +.|.+.++ ++.+|.||-|-|.+...
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeCEEEEeCCCCchh
Confidence 45666777777764 999999999999887766 77888777 79999999999998765
No 222
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.38 E-value=1.7e-06 Score=89.61 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|||+||||||||+++|+.|++.|++|+|+|+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~ 31 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLER 31 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 7999999999999999999999999999994
No 223
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=2.6e-05 Score=85.59 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=30.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||||||+|.||++||+.+++.|.+|+||||
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK 39 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCK 39 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEec
Confidence 58999999999999999999999999999995
No 224
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.37 E-value=3.3e-06 Score=90.74 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=82.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec--Ccc--------C---C-CCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ--KKV--------L---R-GFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~--~~~--------l---~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
..+++|||+|+.|+.+|..+++.|.+|+++... ..+ + + ....++.+.+.+.+++.|++++.+++|.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 358999999999999999999999999999753 111 0 1 1345777888999999999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++...++. ..|.+.+|+++.+|.||+|+|..|..
T Consensus 291 ~I~~~~~~-~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAAGL-IEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecCCe-EEEEECCCCEEEcCEEEECCCCCcCC
Confidence 99876544 67888888889999999999998754
No 225
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=1.7e-05 Score=86.31 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
...+...+.+.+++.||+++.++.++++..+ ++.++.+.. .+|+ .+.++.||+|||-..
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3456666777777889999999999999875 344455543 3564 578999999999754
No 226
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.37 E-value=4.1e-06 Score=90.00 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=81.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec--CccC-----------C-CCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ--KKVL-----------R-GFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~--~~~l-----------~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
..+|+|||+|+.|+.+|..+++.|.+|+++... ..+. + ...+++.+.+.+.+++.|++++.+++|.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence 568999999999999999999999999998632 1111 1 1345677788888999999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++..+++. ..+.+.+|+.+.+|.+|+|+|..|..
T Consensus 292 ~I~~~~~~-~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 292 KIETEDGL-IVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEecCCe-EEEEECCCCEEEeCEEEECCCCCcCC
Confidence 99876544 67788888889999999999998754
No 227
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=1.4e-05 Score=86.89 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++.||+++.++.++++..+++.+..+. ..+|+ .+.++.||+|||....
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 45666777777888999999999999876555434343 34664 5889999999998653
No 228
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.36 E-value=5.1e-07 Score=68.00 Aligned_cols=36 Identities=33% Similarity=0.527 Sum_probs=31.7
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008839 77 TIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 77 IIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
|||||++||++|+.|++.|++|+|+|+ ...+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~---------~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEK---------NDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEES---------SSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEec---------CcccCccee
Confidence 899999999999999999999999994 667888764
No 229
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=2.7e-05 Score=84.84 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+...+.|++++.++.+.++..++ +.+..|.. .+|+ .+.++.||+|+|-...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 4456666777778899999999999988653 33455543 3554 5789999999997553
No 230
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.36 E-value=1.5e-05 Score=86.71 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEE-CCCe--EEEee-EEEEecCcCCC-CCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKT-NKGT--VDGFS-HVMFATGRRPN-TKN 347 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~-~~G~--~i~~d-~vi~a~G~~p~-~~~ 347 (551)
...+...+.+.+++.|++|++++.++++..+++ .++.|.. .+|+ .+.++ .||+|+|-..+ .++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em 280 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDW 280 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHH
Confidence 445666777888899999999999999988643 4445544 3343 46776 59999976554 443
No 231
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.35 E-value=1.7e-05 Score=86.35 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC-CCe--EEEe-eEEEEecCcCCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN-KGT--VDGF-SHVMFATGRRPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~-~G~--~i~~-d~vi~a~G~~p~~ 345 (551)
...+...+.+.+++.|++++.++.++++..+++.++.|... +|+ .+.+ +.||+|+|.....
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 55677888899999999999999999988665554556553 343 4665 6899999986654
No 232
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.35 E-value=2.6e-06 Score=85.96 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=39.1
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+...++.|-.|.++++|.+|..++++ ++|++.+..+..+|.+|+++..
T Consensus 213 ~Afa~ql~~~I~~~~~V~rI~q~~~g-V~Vt~~~~~~~~ad~~i~tiPl 260 (450)
T COG1231 213 EAFAKQLGTRILLNEPVRRIDQDGDG-VTVTADDVGQYVADYVLVTIPL 260 (450)
T ss_pred HHHHHHhhceEEecCceeeEEEcCCe-EEEEeCCcceEEecEEEEecCH
Confidence 33344557788999999999999888 8899988556999999998853
No 233
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.34 E-value=1.5e-05 Score=86.82 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcC----CceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKST----DGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~----~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++.||+++.++.++++..++ +.+..+.. .+|+ .+.++.||+|||...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4566777788888999999999999987654 34444543 4564 578999999999865
No 234
>PRK06126 hypothetical protein; Provisional
Probab=98.34 E-value=8.5e-06 Score=88.43 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=42.8
Q ss_pred HHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+++ .|+++++++++++++.++++ +.+.+ .+|+ ++.+|.||.|.|.+...
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VTATVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EEEEEEECCCCcEEEEEEEEEEecCCcchHH
Confidence 45556666655 48999999999999987766 44554 3453 68999999999987653
No 235
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.33 E-value=3.2e-06 Score=83.34 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECC------C---------eEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNK------G---------TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~------G---------~~i~~d~vi~a~G~~p~~ 345 (551)
.+..++-+..++.||+|+.+..+.++..++++ +..|.+.| | -++.+..-|+|-|.+...
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 45677888889999999999999998887765 45566543 2 257788889998887654
No 236
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.33 E-value=5.1e-05 Score=83.11 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+...+.+.+++.||+++.++.+.++..+ ++.+..+.. .+|+ .+.++.||+|||-...
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 3456666777777789999999999998765 344445543 3564 5789999999997543
No 237
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.32 E-value=9.2e-06 Score=88.92 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC--CceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKST--DGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+..++.|++++.+++|.++..++ +....|.+ .+++ ++.+|.||+|+|.+..
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 55777888888999999999999999998763 44344443 2343 5899999999998643
No 238
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.31 E-value=1.5e-05 Score=83.93 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=76.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------------------------------------------
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL------------------------------------------- 281 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l------------------------------------------- 281 (551)
.++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 5789999999999999999999999999999765321
Q ss_pred --CCC---------------CHHHHHHHHHHHHhcCcE--EEcCcccEEEEEcCCceEEEEECCC--e--EEEeeEEEEe
Q 008839 282 --RGF---------------DEDIRDFVAEQMSLRGIE--FHTEESPQAILKSTDGSLSVKTNKG--T--VDGFSHVMFA 338 (551)
Q Consensus 282 --~~~---------------~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~V~~~~G--~--~i~~d~vi~a 338 (551)
+.. ..++.+.+++..+..|+. +.++++|++++..+++ ..|++.++ . +..+|.||+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-WRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-EEEEEEcCCCceEEEEcCEEEEe
Confidence 000 034556677777788988 8999999999886554 67776532 2 4579999999
Q ss_pred cCc--CCCCC
Q 008839 339 TGR--RPNTK 346 (551)
Q Consensus 339 ~G~--~p~~~ 346 (551)
+|. .|+..
T Consensus 169 tG~~~~P~~P 178 (461)
T PLN02172 169 NGHYTEPNVA 178 (461)
T ss_pred ccCCCCCcCC
Confidence 994 56543
No 239
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.29 E-value=4.2e-06 Score=86.95 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccC---CCCCHHHH---------HHHHHHHHhcCcEEEcCcccE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVL---RGFDEDIR---------DFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l---~~~~~~~~---------~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
.++++|||+|+.|+.+|..|++.+. +|+++++.+... +.+...+. ..-.+.+++.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999876 799998765421 11222111 001344677899999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.++.+. ..|.+.+|+++.+|.+|+|||.+|..
T Consensus 83 ~id~~~---~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRDT---RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCC---CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 997654 34777888889999999999999864
No 240
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.27 E-value=7.5e-06 Score=85.26 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEE---CCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKT---NKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+.+.+.+.+ .|++++++++|++++.++++ +.+++ .+++++++|.||-|-|.+...
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v~v~~~~~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-ITATIIRTNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-eEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence 455666666655 48999999999999876665 66655 344579999999999988754
No 241
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.27 E-value=1.7e-05 Score=83.52 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcC---cEEEcCcccEEEEEc-------CCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRG---IEFHTEESPQAILKS-------TDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G---v~i~~~~~v~~i~~~-------~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.+ ++++.+++|.+++.+ +++ ++|++.+|+++.+|.||-|-|.....
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~-v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW-VHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc-eEEEEcCCCEEEeeEEEEecCCCChh
Confidence 34556666666664 999999999999742 234 77889999999999999999998765
No 242
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.26 E-value=2.5e-06 Score=87.86 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHH--HhCCCcEEEEcc
Q 008839 74 DLFTIGAGSGGVRASRFA--ANFGASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l--~~~G~~V~liE~ 103 (551)
||+|||||+||+++|.+| ++.|.+|+|||+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~ 32 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDP 32 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 899999999999999999 779999999993
No 243
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.25 E-value=4.8e-06 Score=88.00 Aligned_cols=101 Identities=28% Similarity=0.421 Sum_probs=74.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCcc------CC----CC-C--HHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKV------LR----GF-D--EDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~------l~----~~-~--~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++|+|||+|+.|+.+|..|++++ .+|+++++.+.+ ++ .. + .++.....+.+++.|++++.+++|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 489999988753 11 11 1 1222334466788899999999999
Q ss_pred EEEEcCCceEEEEE-CCCeEEE--eeEEEEecCcCCCCCC
Q 008839 311 AILKSTDGSLSVKT-NKGTVDG--FSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~-~~G~~i~--~d~vi~a~G~~p~~~~ 347 (551)
+|+.+++. +.+.. .+|+.++ +|.+|+|||.+|+...
T Consensus 81 ~id~~~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKNKT-ITVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCCCE-EEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 99876654 44443 2355666 9999999999987643
No 244
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.25 E-value=7.8e-06 Score=84.77 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEE-cCCceEEEEEC-CCe--EEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKTN-KGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~~V~~~-~G~--~i~~d~vi~a~G~~p~~ 345 (551)
+...+.+.+.+.|+.++++.+++.+.. +++. ..|++. +|+ ++++|.||-|-|.+...
T Consensus 105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 105 VTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCCchhh
Confidence 344556666777999999988887755 3333 556664 775 68999999999987754
No 245
>PRK06996 hypothetical protein; Provisional
Probab=98.24 E-value=1.1e-05 Score=83.87 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC---eEEEeeEEEEecCcC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRR 342 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G~~ 342 (551)
.+.+.+.+.+++.|++++.++++++++.++++ +.+.+.++ +++.+|.||-|-|..
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcceEEeeeEEEECCCCC
Confidence 46777888888899999999999999877766 77777754 579999999999963
No 246
>PRK07236 hypothetical protein; Provisional
Probab=98.23 E-value=8.2e-06 Score=84.55 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=75.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCHHHHHHHH-------------------------
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDEDIRDFVA------------------------- 293 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~l~------------------------- 293 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... +.+...+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 468999999999999999999999999999988643321 1222222221
Q ss_pred ------------------HHHHh--cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 294 ------------------EQMSL--RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 294 ------------------~~l~~--~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.|.+ .+++++++++|++++.++++ ++|.+.+|+++.+|.||.|-|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 13568999999999887666 78899999999999999999987654
No 247
>PRK07538 hypothetical protein; Provisional
Probab=98.21 E-value=2.9e-05 Score=81.28 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=40.5
Q ss_pred HHHHHHHHHHh-cC-cEEEcCcccEEEEEcCCceEEEEECCC-----eEEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSL-RG-IEFHTEESPQAILKSTDGSLSVKTNKG-----TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~-~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G-----~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+ .| +.++++++|++++.++++ +.+.+.++ +++.+|.||-|-|.+...
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 44555555544 36 579999999999877666 44544332 379999999999987654
No 248
>PLN02612 phytoene desaturase
Probab=98.21 E-value=7.1e-06 Score=88.91 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCc
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
..+.+.+.+.+++.|++|+++++|++|+.++++ .+.|.+.+|+.+++|.||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 457788888888999999999999999886555 34578888988999999999864
No 249
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.20 E-value=5.8e-05 Score=79.59 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=64.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||++|+.+|..+++.|.+|+|+|. ...+ .|
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~---------~~~~---------l~------------------------- 194 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDA---------ASTI---------LP------------------------- 194 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEec---------CCcc---------CC-------------------------
Confidence 4799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p 224 (551)
..+ +.+ .....+.+++.|++++.+ .+..++ ...+.+ +++++.+|.+++|+|.+|+..
T Consensus 195 ---~~~-~~~-----------~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 195 ---REE-PSV-----------AALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred ---CCC-HHH-----------HHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 001 011 112234566779998876 344443 233333 677899999999999998864
No 250
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.20 E-value=4e-05 Score=89.80 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=31.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+.++||||||+|.||++||+++++.|.+|+|+||
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK 440 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEK 440 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEc
Confidence 3468999999999999999999999999999995
No 251
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.17 E-value=7.8e-06 Score=85.44 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---Ce--EEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---GT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G~--~i~~d~vi~a~G~~p~ 344 (551)
|..+.-.......++|-++...++|+++..+++ ++.|+..| |+ .+.++.||.|+|.+..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 455666677778899999999999999998877 56677654 33 5889999999998654
No 252
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.16 E-value=2.2e-05 Score=80.60 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEcc
Q 008839 74 DLFTIGAGSGGVRASRFAANF--GASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~ 103 (551)
||+|||||+||+++|.+|++. |++|+|+|+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~ 32 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEA 32 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 799999999999999999986 999999993
No 253
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.15 E-value=1.3e-05 Score=84.46 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.|.+..++.||+++.+ .|.++..++++ +..|++.+|+++++|.+|-|+|+....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 45677888888999999988 57777776665 457999999999999999999997654
No 254
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.12 E-value=1.1e-05 Score=82.06 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=80.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCCC-----------CCHHHHHHHHHHHHhcC-cEEEcCcccE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLRG-----------FDEDIRDFVAEQMSLRG-IEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~~-----------~~~~~~~~l~~~l~~~G-v~i~~~~~v~ 310 (551)
.+++||+|+|+-|+.++..|.+.- .+|+++++.+..+-. -+.++...+.+.++..+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 478999999999999999998874 899999998865311 13345555788888666 999877 899
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNL 348 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l 348 (551)
+|+.++. +|.+.+++.+++|.+|+|+|..++...+
T Consensus 82 ~ID~~~k---~V~~~~~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDAK---KVTLADLGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EEcccCC---EEEeCCCccccccEEEEecCCcCCcCCC
Confidence 9987764 4888887789999999999999988653
No 255
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.10 E-value=2.8e-05 Score=81.24 Aligned_cols=71 Identities=17% Similarity=0.082 Sum_probs=56.3
Q ss_pred EEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 271 VHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 271 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
-.+..+.+..+. +..+.+.+....++.|..|+.++.|++|....++...|++.-|. |++..||.|+|++..
T Consensus 174 g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 174 GGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAR 244 (856)
T ss_pred eeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHH
Confidence 345555554331 34456888888999999999999999999877766689999886 999999999999874
No 256
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.10 E-value=4.6e-05 Score=80.95 Aligned_cols=94 Identities=21% Similarity=0.435 Sum_probs=63.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||+.|+.+|..|++.|.+|+|+|+ ...+ +|
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~---------~~~~---------l~------------------------- 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEM---------LDRI---------LP------------------------- 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc---------CCCC---------CC-------------------------
Confidence 5899999999999999999999999999992 1110 01
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
..+ .. +...+.+.+++.|++++.+ .+..++ ...+.+ ++ ..+.+|.+++|+|.+|+..
T Consensus 208 ---~~~-~~-----------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 208 ---GED-AE-----------VSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred ---CCC-HH-----------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 001 01 1112234556679999887 344443 334433 45 5799999999999998765
No 257
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.10 E-value=1.2e-05 Score=82.68 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=74.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCccC--CCC---------CHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008839 247 KIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKVL--RGF---------DEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~l--~~~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
+|+|||+|+.|+.+|..+++. +.+|+++++.+... +.+ ..++...+.+.+++.|++++.+ +|++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 489999999999999998643 67999999877532 111 1223334566777889999876 89999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+++ .|.+.+|+++.+|.+|+|||..|+...
T Consensus 80 d~~~~---~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DPDRR---KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ecccC---EEEECCCCcccccEEEEccCCCCCCCC
Confidence 87654 478888888999999999999987654
No 258
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.09 E-value=1.7e-05 Score=83.19 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=74.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--CCC---------CHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--RGF---------DEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l--~~~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
.++|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. +.+ ..++...+.+.++..|++++.+ +|++|+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id 88 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDVD 88 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEEE
Confidence 4689999999999999999977678999999877642 111 1223334556677778888765 899998
Q ss_pred EcCCceEEEEE--------CCCeEEEeeEEEEecCcCCCCCC
Q 008839 314 KSTDGSLSVKT--------NKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 314 ~~~~~~~~V~~--------~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+++. +.+.. .+|+++++|.+|+|+|..|+...
T Consensus 89 ~~~~~-v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ 129 (424)
T PTZ00318 89 FEEKR-VKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN 129 (424)
T ss_pred cCCCE-EEEecccccccccCCceEecCCEEEECCCcccCCCC
Confidence 76654 33321 45668999999999999987543
No 259
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.09 E-value=3.3e-06 Score=89.87 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
-..+.+.+.+.+++.|++|+++++|++|..++++.+++.+.+|+.+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 446889999999999999999999999998877557788888877999999998766
No 260
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.08 E-value=9.8e-06 Score=75.57 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=72.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---CCCCH-----------HHH--H--HHHHHHHhcCcEEEcCcc
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---RGFDE-----------DIR--D--FVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---~~~~~-----------~~~--~--~l~~~l~~~Gv~i~~~~~ 308 (551)
+|+|||+|+.|+.+|..|++.+.+|+++++.+... ..... ... . .+.+.+...+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 58999999999999999999999999997655310 00000 000 1 334445788999999999
Q ss_pred cEEEEEcCCc----eEEE---EECCCeEEEeeEEEEecCcCCCCCC
Q 008839 309 PQAILKSTDG----SLSV---KTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 309 v~~i~~~~~~----~~~V---~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+++..... ...+ ...++.++.+|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 9999877652 1122 3345668999999999999887654
No 261
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.08 E-value=1.6e-05 Score=89.54 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=76.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC----CCeEEEEeecCccC------CC-C----CHHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 246 EKIAIVGGGYIALEFAGIFSGL----TSEVHVFIRQKKVL------RG-F----DEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~----g~~Vtlv~~~~~~l------~~-~----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++++|||+|+.|+.+|..|++. +.+|+++.+.+++. +. + ..++.....+.+++.||+++.++.|.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999764 46899999887642 11 1 11222223456788999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+|+.+. ..|.+.+|+++.+|.+|+|||..|....
T Consensus 84 ~Id~~~---~~V~~~~G~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 84 TINRQE---KVIHSSAGRTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEeCCC---cEEEECCCcEEECCEEEECCCCCcCCCC
Confidence 997653 3477888888999999999999987654
No 262
>PRK07208 hypothetical protein; Provisional
Probab=98.06 E-value=4.7e-06 Score=89.02 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceE-EEEE--CCCe--EEEeeEEEEecCcC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSL-SVKT--NKGT--VDGFSHVMFATGRR 342 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~V~~--~~G~--~i~~d~vi~a~G~~ 342 (551)
..+.+.+.+.+++.|++++++++|++|..++++.+ .+.. .+|+ ++.+|.||+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 45778888899999999999999999998776533 3333 2453 58899999988753
No 263
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.06 E-value=4e-05 Score=75.97 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=75.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC---------------------------------------C----
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR---------------------------------------G---- 283 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~---- 283 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998754210 0
Q ss_pred ------C-CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC-CeEEEeeEEEEecCcCCC
Q 008839 284 ------F-DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK-GTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 284 ------~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G~~i~~d~vi~a~G~~p~ 344 (551)
+ ..++.+.+.+.+++.|++++.+++++++..++++ +.+.+.+ +.++.+|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-VVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-EEEEEcCccEEEEeCEEEECCCcchH
Confidence 0 1234456777788899999999999999877665 5555543 457999999999998754
No 264
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.06 E-value=1.7e-05 Score=83.49 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=70.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC--C-CCCHH-------HHHHH----HHHHHhcCcEEEcCccc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL--R-GFDED-------IRDFV----AEQMSLRGIEFHTEESP 309 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l--~-~~~~~-------~~~~l----~~~l~~~Gv~i~~~~~v 309 (551)
++|+|||+|+.|+.+|..|+++ +.+|+++++.+.+. + .++.- ..+.+ .+..++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999887 57899999986432 1 01110 01111 23345679999999999
Q ss_pred EEEEEcCCceEEEEECC-Ce--EEEeeEEEEecCcCCCCC
Q 008839 310 QAILKSTDGSLSVKTNK-GT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~-G~--~i~~d~vi~a~G~~p~~~ 346 (551)
++|+.+++. +.+...+ ++ ++.+|.+|+|||.+|+..
T Consensus 82 ~~Id~~~~~-v~~~~~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 82 IAINDERQT-VTVLNRKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred EEEECCCCE-EEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence 999876644 4454432 22 468999999999999754
No 265
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.05 E-value=0.00011 Score=77.19 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEEC-CCeEEEeeEEEEecCcCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKTN-KGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~~-~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++.|++++++++++++..+ ++.++.|... ++..+.++.||+|+|-..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 346677888889999999999999999876 3334445543 345789999999999543
No 266
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.04 E-value=0.00021 Score=77.69 Aligned_cols=42 Identities=17% Similarity=0.088 Sum_probs=35.9
Q ss_pred EEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 303 FHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+++|++++.++++ ++|.+.+|+++.+|.||.|-|.+...
T Consensus 209 i~~g~~V~~I~~~~d~-VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 209 IRNESNVVDFEDSGDK-VTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred EEcCCEEEEEEEeCCE-EEEEECCCCEEEcCEEEECCCCCcHH
Confidence 6788899999877666 77899999889999999999987654
No 267
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.04 E-value=2e-05 Score=80.46 Aligned_cols=103 Identities=22% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC---------CCHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008839 242 PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG---------FDEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 242 ~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~---------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.+.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+... .+.+......+.+.+.|++++.++.+..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 445789999999999999999999999999999998765321 22333344456667779999999877654
Q ss_pred EE---cCCceEEEEE--CCCeEEEeeEEEEecCcC-CC
Q 008839 313 LK---STDGSLSVKT--NKGTVDGFSHVMFATGRR-PN 344 (551)
Q Consensus 313 ~~---~~~~~~~V~~--~~G~~i~~d~vi~a~G~~-p~ 344 (551)
.. ..+....... .++..+.+|.||+|+|.. |.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred cccccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence 32 1111011111 112237899999999984 44
No 268
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.04 E-value=1.5e-05 Score=89.66 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=74.9
Q ss_pred EEEEcCcHHHHHHHHHHHhCC---CeEEEEeecCccC--C-CCC---------HHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008839 248 IAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKKVL--R-GFD---------EDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 248 vvViG~G~~g~e~a~~l~~~g---~~Vtlv~~~~~~l--~-~~~---------~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
|+|||+|+.|+.+|..+++++ .+|+++++.+.+. + .+. +++.....+.+++.||+++++++|+.|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988764 5899999887642 0 011 112222356778899999999999999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+. ..|.+.+|+++.+|.+|+|||..|+...
T Consensus 81 d~~~---k~V~~~~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DTDQ---KQVITDAGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred ECCC---CEEEECCCcEeeCCEEEECCCCCcCCCC
Confidence 8654 3478888988999999999999987653
No 269
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.02 E-value=6.8e-05 Score=76.23 Aligned_cols=95 Identities=19% Similarity=0.291 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEEC-----CCeEEEeeEEEEecCcCCCCCCCCccccCeeec-C
Q 008839 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTN-----KGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT-K 359 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~-----~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~-~ 359 (551)
.+.+.+.+.+++. |++++++++|++|+..+++...|.+. +..++.++.|++..|-..-. + +..+|++-. .
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~-L--Lqksgi~e~~g 258 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP-L--LQKSGIPEGKG 258 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH-H--HHHcCChhhcc
Confidence 4566677777777 99999999999999988875666653 23478999999999986533 2 566676422 2
Q ss_pred CCCeEeC-CCCCCCCC--------cEEEeCcCCC
Q 008839 360 NGAIEVD-EYSGTAVP--------SIWAVGDVTD 384 (551)
Q Consensus 360 ~G~i~vd-~~~~t~~~--------~vya~GD~~~ 384 (551)
-|+..|. .++++..| -||..-.+-.
T Consensus 259 yggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGa 292 (488)
T PF06039_consen 259 YGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGA 292 (488)
T ss_pred cCCCcccceEEecCCHHHHHHhcceeeeeCCCCC
Confidence 2333333 45666444 3676555433
No 270
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.00 E-value=6e-05 Score=76.36 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=69.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEe-ecCccCC-------------------------------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFI-RQKKVLR------------------------------------------- 282 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~-~~~~~l~------------------------------------------- 282 (551)
.|+|||||..|+|+|..+++.|.+|.++. ..+.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999994 3232210
Q ss_pred ----------CCC-HHHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 283 ----------GFD-EDIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 283 ----------~~~-~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
..| ..+.+.+.+.+++ .+++++ ..+|+++..+++.+..|.+.+|+.+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 011 1233446666666 588887 558999998888778899999999999999999998
No 271
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.00 E-value=2e-05 Score=89.81 Aligned_cols=93 Identities=23% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |. ++.++.+...+.+++.||++++|+.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 47899999999999999999999999999999876432 22 466777777788999999999986441
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcC-CCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRR-PNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~-p~~ 345 (551)
..+++++.....+|.|++|||.. |..
T Consensus 381 -----~dit~~~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 381 -----KTATLEDLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred -----cEEeHHHhccccCCEEEEeCCCCCCCc
Confidence 22555555556799999999995 543
No 272
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.99 E-value=7.4e-06 Score=86.40 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=37.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
..++|+|||||+|||+||.+|.+.|++|+|+|+ ++.+||...
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEA---------RdRvGGRI~ 55 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEA---------RDRVGGRIY 55 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEec---------cCCcCceeE
Confidence 357999999999999999999999999999994 788888863
No 273
>PRK07236 hypothetical protein; Provisional
Probab=97.98 E-value=9.2e-05 Score=76.73 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=30.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 47999999999999999999999999999994
No 274
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=2.1e-05 Score=80.81 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=30.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|||+|||||.||+.||..++|.|.+++|+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT 34 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLT 34 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEE
Confidence 35999999999999999999999999999998
No 275
>PRK10262 thioredoxin reductase; Provisional
Probab=97.97 E-value=0.00012 Score=73.85 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=72.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc---c--------CCC-----CCHHHHHHHHHHHHhcCcEEEcCcc
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK---V--------LRG-----FDEDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~---~--------l~~-----~~~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
.++|+|||+|+.|+.+|..+.+.|.++.+++.... + ++. ..+++.+.+.+.....++++..+ .
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H 84 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-E
Confidence 57899999999999999999999999988864321 0 011 12344666777777788888776 5
Q ss_pred cEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008839 309 PQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+..++..++. +.+...++ .+.+|.||+|+|..|+..
T Consensus 85 v~~v~~~~~~-~~v~~~~~-~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 85 INKVDLQNRP-FRLTGDSG-EYTCDALIIATGASARYL 120 (321)
T ss_pred EEEEEecCCe-EEEEecCC-EEEECEEEECCCCCCCCC
Confidence 6777765443 55655444 589999999999998653
No 276
>PLN02463 lycopene beta cyclase
Probab=97.97 E-value=5.5e-05 Score=79.30 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=75.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-CC-C---------------------------------------
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RG-F--------------------------------------- 284 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-~~-~--------------------------------------- 284 (551)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... +. .
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999999864211 10 0
Q ss_pred ----CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 ----DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ----~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..++.+.+.+.+.+.|++++ .++|++++.++++ ..|++.+|+++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK-SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECcCCCcC
Confidence 01122345556677899997 4689999887665 7788999988999999999998764
No 277
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.96 E-value=9.2e-06 Score=82.71 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=37.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
++||+|||||++|+++|..|++.|.+|+|+|+ ...+||.|..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk---------~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEK---------RNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEec---------CCCCCCceee
Confidence 37999999999999999999999999999994 5678998754
No 278
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.95 E-value=8.7e-05 Score=80.46 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=75.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-----------CCC----CCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-----------LRG----FDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-----------l~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
-.|+|||||+.|+.+|..+++.|.+|+++++...- .+. ...++.+.+.+.+++.|++++ +++|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 46999999999999999999999999999975310 011 124566777778888899986 56888
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+..+++. ..|.+.+| .+.+|.+|+|||.+|...
T Consensus 84 ~i~~~~~~-~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDFDGDI-KTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEecCCE-EEEEecCC-EEEEeEEEECCCCccCCC
Confidence 88765433 55777666 489999999999998764
No 279
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.93 E-value=6.8e-05 Score=77.39 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=71.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccC---CCCC---------HHHHH-HHHHHHHhcCcEEEcCcccE
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVL---RGFD---------EDIRD-FVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l---~~~~---------~~~~~-~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++++|||+|+.|+.+|..|++.+ .+|+++.+.+... +.+. .++.. ...+.+++.|++++.+++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998864 5799998766421 1111 11111 13355677899999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+++.+.. .|.+ +++.+.+|.+|+|||..|....
T Consensus 83 ~id~~~~---~v~~-~~~~~~yd~LVlATG~~~~~p~ 115 (377)
T PRK04965 83 DIDAEAQ---VVKS-QGNQWQYDKLVLATGASAFVPP 115 (377)
T ss_pred EEECCCC---EEEE-CCeEEeCCEEEECCCCCCCCCC
Confidence 9976543 2444 5667999999999999987543
No 280
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.91 E-value=2.6e-05 Score=82.36 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=70.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.||+++.++.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG---- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence 35799999999999999999999999999999876441 2 2566777777788899999999997541
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCc-CCCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGR-RPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~-~p~~ 345 (551)
..+.+.+. ...+|.||+|||. .|..
T Consensus 208 -----~~v~~~~~-~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 208 -----KTATLEEL-FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred -----CcCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence 11333333 2468999999998 5654
No 281
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.91 E-value=5.5e-05 Score=85.29 Aligned_cols=91 Identities=22% Similarity=0.329 Sum_probs=69.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |. ++.+....-.+.+++.||++++++.+ .+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di-- 614 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL-- 614 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE--
Confidence 46799999999999999999999999999999876532 22 34455555567788899999999765 22
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.....+|.||+|||.++..
T Consensus 615 --------~le~L~~~gYDaVILATGA~~~~ 637 (1019)
T PRK09853 615 --------TVEQLKNEGYDYVVVAIGADKNG 637 (1019)
T ss_pred --------EhhhheeccCCEEEECcCCCCCC
Confidence 12223345689999999998643
No 282
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.90 E-value=2.7e-05 Score=82.55 Aligned_cols=90 Identities=22% Similarity=0.319 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008839 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. +. .+.++.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 457899999999999999999999999999999887642 22 4567777788889999999999876521
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008839 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.+.+.+.. +.+|.||+|||..
T Consensus 216 -------~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHHH-hhCCEEEEccCCC
Confidence 12222333 7799999999986
No 283
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.87 E-value=0.0001 Score=70.50 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCc----eEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDG----SLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~----~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~ 359 (551)
+...+.+.++..|.+++++-+++.+..+... .+.|.-..++++.+..+|-|+|.....- .+.+|++.++
T Consensus 198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~---aa~sgc~~dP 270 (453)
T KOG2665|consen 198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRC---AALSGCELDP 270 (453)
T ss_pred HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHH---HHHhCCCCCC
Confidence 3445556688999999999999999876543 2334444467899999999999876442 3445565554
No 284
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.86 E-value=1.8e-05 Score=74.18 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=35.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
.+|+|||+|++|++||..|+..|.+|+++|| ...+||...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eK---------g~GvGGRlA 41 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEK---------GRGVGGRLA 41 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEc---------CCCcccchh
Confidence 3699999999999999999999999999995 566777754
No 285
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0008 Score=66.66 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=76.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCcc-----------CCC-----CCHHHHHHHHHHHHhcCcEEEcCcc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKV-----------LRG-----FDEDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~-----------l~~-----~~~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
-.|+|||+|+.|+-.|-++.+.+.+ +.+++....- .|. ..+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 3689999999999999999999987 5555542110 122 3456777777888888999988 57
Q ss_pred cEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 309 PQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
|.+++..++ ...|.+.+|+ +.++.||+|||..+....
T Consensus 83 v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 83 VEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEeecCc-eEEEEECCCe-EEEeEEEECcCCcccCCC
Confidence 888876554 4789999998 999999999999876643
No 286
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.83 E-value=0.00013 Score=77.08 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=68.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------------------------------------CC-----
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------------------------------------FD----- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------------------------------------~~----- 285 (551)
.++|||+|+.|+.+|..++++|.+|+++++. .+-.. ++
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLL 82 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHH
Confidence 5899999999999999999999999999973 21100 00
Q ss_pred -------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 286 -------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 286 -------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.++.+.+++.+++.||+++.+ ++..+.. +. +.+. .+|+++.+|.||+|||.+|....
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~--~~-v~v~-~~g~~~~~d~lIiATGs~p~~p~ 146 (446)
T TIGR01424 83 QKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP--NT-VEVL-QDGTTYTAKKILIAVGGRPQKPN 146 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC--CE-EEEe-cCCeEEEcCEEEEecCCcCCCCC
Confidence 012334556677889999877 5655532 22 4443 46778999999999999986543
No 287
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.82 E-value=5.6e-05 Score=80.11 Aligned_cols=92 Identities=21% Similarity=0.334 Sum_probs=70.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46799999999999999999999999999999877541 2 246667677778899999999999765221
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+ ....+|.||+|+|..+..
T Consensus 218 -------~~~~~-~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 -------ISLDD-LLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred -------cCHHH-HHhcCCEEEEEeCCCCCC
Confidence 11111 124689999999998753
No 288
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.82 E-value=0.00026 Score=75.85 Aligned_cols=136 Identities=20% Similarity=0.291 Sum_probs=85.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------------------------------C----------
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------------------------------F---------- 284 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~---------- 284 (551)
|+|+|||+|++|+-.+..|.+.|.+++++++.+.+... +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 79999999999999999999999999999987653110 1
Q ss_pred -CHHHHHHHHHHHHhcCc--EEEcCcccEEEEEcCC----ceEEEEECC-Ce--EEEeeEEEEecCcC--CCCCCCCccc
Q 008839 285 -DEDIRDFVAEQMSLRGI--EFHTEESPQAILKSTD----GSLSVKTNK-GT--VDGFSHVMFATGRR--PNTKNLGLEK 352 (551)
Q Consensus 285 -~~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~----~~~~V~~~~-G~--~i~~d~vi~a~G~~--p~~~~l~l~~ 352 (551)
..++.+.++.+.+..++ .+.++++|++++..++ +...|++.+ |+ +..+|.|++|+|.. |+... -.-
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~--~~~ 159 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE--PSF 159 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-------
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh--hhh
Confidence 13455667777776666 5899999999987543 346777754 43 35689999999985 33221 001
Q ss_pred cCeeecCCCCeEeCCCCCC----CCCcEEEeCcCCC
Q 008839 353 VGVKMTKNGAIEVDEYSGT----AVPSIWAVGDVTD 384 (551)
Q Consensus 353 ~gl~~~~~G~i~vd~~~~t----~~~~vya~GD~~~ 384 (551)
.|++.- +|.+.-....+. ..++|-++|-..+
T Consensus 160 ~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 160 PGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 233211 355554444432 3577888886544
No 289
>PLN02576 protoporphyrinogen oxidase
Probab=97.81 E-value=2.3e-05 Score=84.06 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=37.1
Q ss_pred CccEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCCCCeec
Q 008839 72 DFDLFTIGAGSGGVRASRFAANF-GASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
++||+|||||++||+||++|.+. |++|+|+|+ ...+||.+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa---------~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA---------RDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEec---------CCCCCCcee
Confidence 47999999999999999999999 999999994 677898864
No 290
>PRK06753 hypothetical protein; Provisional
Probab=97.80 E-value=0.00022 Score=73.45 Aligned_cols=98 Identities=22% Similarity=0.319 Sum_probs=72.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-----CCHHH---------------------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-----FDEDI--------------------------------- 288 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~--------------------------------- 288 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6899999999999999999999999999987642100 00000
Q ss_pred ---------------HHHHHHHHHhc--CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 289 ---------------RDFVAEQMSLR--GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ---------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
...+.+.|.+. +.+++++++|++++.++++ +.|++.+|+++.+|.||-|-|.++..
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEECCCCEEecCEEEECCCcchHH
Confidence 01122333222 4578999999999877666 78889999999999999999987654
No 291
>PLN02268 probable polyamine oxidase
Probab=97.79 E-value=2.4e-05 Score=82.44 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=38.9
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+.+.|. .++++++++.|++|...+++ +.|++.+|+++.+|.||+|+..
T Consensus 203 l~~~l~-~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 203 VINTLA-KGLDIRLNHRVTKIVRRYNG-VKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred HHHHHh-ccCceeCCCeeEEEEEcCCc-EEEEECCCcEEEcCEEEEecCH
Confidence 334443 36789999999999987777 7788889988999999999754
No 292
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.79 E-value=2.3e-05 Score=82.95 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCc-EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 288 IRDFVAEQMSLRGI-EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv-~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+...+.+..+..+. +|+++++|++|+.++++ +.|.+.+|+++.+|.||+|+..
T Consensus 220 ~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 220 LQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG-YEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred HHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCCH
Confidence 33333343333333 89999999999987766 7788889989999999998764
No 293
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.78 E-value=0.0001 Score=78.27 Aligned_cols=98 Identities=22% Similarity=0.274 Sum_probs=69.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc--------cCC--------------------CCC----------H-
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK--------VLR--------------------GFD----------E- 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~--------~l~--------------------~~~----------~- 286 (551)
++++|||+|+.|+++|..+.+.|.+|+++++... -.| +.. -
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 5799999999999999999999999999997540 000 000 0
Q ss_pred H-----------HHHHHHHHHHhcCcEEEcCcccEEEE--EcCCceEEEEECCCe--EEEeeEEEEecCcCCCC
Q 008839 287 D-----------IRDFVAEQMSLRGIEFHTEESPQAIL--KSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~-----------~~~~l~~~l~~~Gv~i~~~~~v~~i~--~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
. +.+.+.+.+++.||+++.+ ++..++ .+.+ .+.|.+.+|+ ++.+|.||+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~-~v~V~~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPH-RVKVTTADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCC-EEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence 0 0123445567789999888 344432 2223 3667777775 69999999999999864
No 294
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.78 E-value=2.5e-05 Score=83.09 Aligned_cols=40 Identities=5% Similarity=0.077 Sum_probs=34.8
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.+++++++|++|+.++++ +.|++.+|+++.+|.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSN-YTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCc-EEEEECCCcEEEcCEEEECCCH
Confidence 789999999999987766 7788888888999999998864
No 295
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.76 E-value=2.7e-05 Score=83.42 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-----eEEEeeEEEEecCcC
Q 008839 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-----TVDGFSHVMFATGRR 342 (551)
Q Consensus 284 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-----~~i~~d~vi~a~G~~ 342 (551)
--..+.+.+.+.+++.|++|+++++|++|..+++....|.+.++ +++.+|.||+++...
T Consensus 230 G~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 230 SMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred cHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 34568888999999999999999999999887664345555444 578999999998753
No 296
>PRK12831 putative oxidoreductase; Provisional
Probab=97.75 E-value=6.8e-05 Score=79.36 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCH-HHHHHHHHHHHhcCcEEEcCcccEEE
Q 008839 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDE-DIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++. ++.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~- 216 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK- 216 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence 346799999999999999999999999999999865431 11 222 2566666788899999999975421
Q ss_pred EEcCCceEEEEECCC-eEEEeeEEEEecCc-CCCC
Q 008839 313 LKSTDGSLSVKTNKG-TVDGFSHVMFATGR-RPNT 345 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G-~~i~~d~vi~a~G~-~p~~ 345 (551)
.+.+.+. +.+.+|.||+|||. .|..
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222332 23569999999998 4654
No 297
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=3e-05 Score=79.90 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=37.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
++|+|+|||.|||+||++|+++|++|+|+|. .+.+||.|..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea---------~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEA---------RDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEec---------cCccCceeee
Confidence 3799999999999999999999999999993 7889998753
No 298
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.74 E-value=8e-05 Score=78.48 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=66.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHh--CCCeEEEEeecCccC--------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSG--LTSEVHVFIRQKKVL--------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ....+...+.+.+++.||+++.|..+-
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg- 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG- 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence 46799999999999999999986 799999999988653 11 112334455667778899998875441
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+-. ..+|.||+|+|..+.
T Consensus 104 --------~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 104 --------RDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred --------ccccHHHHh-hhCCEEEEecCCCCC
Confidence 113333332 468999999999863
No 299
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.74 E-value=0.00021 Score=75.85 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=68.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCHH--------------------------------
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDED-------------------------------- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~~-------------------------------- 287 (551)
-.|+|||+|+.|+.+|..+.+.|.+|+++++.+.+... .+..
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 36999999999999999999999999999986443110 1100
Q ss_pred ----------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCCCC
Q 008839 288 ----------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 ----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
..+.+.+.+++.||+++.+. +..+. . +.+.|...+|+ ++.+|.||+|||.+|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~-~~~~v~~~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD--P-HTVEVECPDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec--C-CEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 01123345667899998873 33332 2 23667777774 689999999999998654
No 300
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00084 Score=74.07 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=73.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|.|||+|+.|+.+|..|.+.|..|++++|++++. |. +|..+.+.-.+.|.+.||+|++|++|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 47899999999999999999999999999999999762 32 67788888888999999999999765321
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
|.+ |+-.-+.|.||+|+|..-..+
T Consensus 1862 -------vs~-d~l~~~~daiv~a~gst~prd 1885 (2142)
T KOG0399|consen 1862 -------VSL-DELKKENDAIVLATGSTTPRD 1885 (2142)
T ss_pred -------ccH-HHHhhccCeEEEEeCCCCCcC
Confidence 221 222345799999999865444
No 301
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.73 E-value=0.00015 Score=70.35 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
...+++.-..-+-++.+++.|..|..-.++ +.++..||++-.+|.||+|+-.
T Consensus 220 ~~yvq~laa~~~~~i~t~~~V~~l~rlPdG-v~l~~~~G~s~rFD~vViAth~ 271 (447)
T COG2907 220 RAYVQRLAADIRGRIETRTPVCRLRRLPDG-VVLVNADGESRRFDAVVIATHP 271 (447)
T ss_pred HHHHHHHhccccceeecCCceeeeeeCCCc-eEEecCCCCccccceeeeecCh
Confidence 344444444445569999999999988888 6677788998899999998754
No 302
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.72 E-value=7.4e-05 Score=76.76 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCeE------EEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC--c--eEEEEE-
Q 008839 256 IALEFAGIFSGLTSEV------HVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD--G--SLSVKT- 324 (551)
Q Consensus 256 ~g~e~a~~l~~~g~~V------tlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~--~~~V~~- 324 (551)
+++|+-.+|.++=.++ .-+.+... ..-+.+..-+.+.|+++||++.++++|++|+-+.. . +..+.+
T Consensus 174 Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~Y---NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~ 250 (500)
T PF06100_consen 174 SAVEFRRYLHRFIHEIPGLNDLSGLDRTKY---NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE 250 (500)
T ss_pred hHHHHHHHHHHHHHhcCCCCCccccccCcc---ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE
Confidence 6889988888762222 22222111 12345777899999999999999999999976432 1 112222
Q ss_pred CCCe--EE---EeeEEEEecCcCC
Q 008839 325 NKGT--VD---GFSHVMFATGRRP 343 (551)
Q Consensus 325 ~~G~--~i---~~d~vi~a~G~~p 343 (551)
.+|. +| +-|.|++..|..-
T Consensus 251 ~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 251 QDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred cCCCeeEEEeCCCCEEEEECCccc
Confidence 4443 23 3688888888754
No 303
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.72 E-value=0.00027 Score=73.70 Aligned_cols=93 Identities=28% Similarity=0.421 Sum_probs=66.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||+|+.|+.+|..|++.|++|+++|. ...+++...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~---------~~~~~~~~~------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEA---------ADRLGGQLL------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEc---------ccccchhhh-------------------------------
Confidence 6899999999999999999999999999992 222222210
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecCC----E----EEEcCEEEEeCeEEEcCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDPH----T----VDVDGKLYSARHILISVGGRPF 222 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~~----~----v~v~g~~~~~d~lviAtG~~p~ 222 (551)
. ..+...+.+.++..||+++.+. +..++.. . ...++..+.+|.+++++|.+|+
T Consensus 177 -----------~------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 177 -----------D------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -----------h------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 0 2233445566777789887764 3444432 1 2227788999999999999985
No 304
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=4.2e-05 Score=73.46 Aligned_cols=42 Identities=33% Similarity=0.515 Sum_probs=38.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
++|++|||+|.+|+..|..|++.|.+|+|||+ +..+||.|--
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvek---------R~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEK---------RNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEec---------cccCCCcccc
Confidence 48999999999999999999999999999995 8889999853
No 305
>PLN02568 polyamine oxidase
Probab=97.71 E-value=4.3e-05 Score=82.03 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=34.5
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
-+|++++.|++|..++++ +.|.+.+|+++.+|.||+++..
T Consensus 255 ~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 255 GTIQLGRKVTRIEWQDEP-VKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred CEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcCEEEEcCCH
Confidence 369999999999987766 7889999988999999998753
No 306
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.70 E-value=0.00026 Score=74.75 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=66.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CCH-----------HHH----------HHH----HH
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FDE-----------DIR----------DFV----AE 294 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~~-----------~~~----------~~l----~~ 294 (551)
.|+|||+|+.|+.+|..+++.|.+|+++++.+..+.. .+. ++. +.+ .+
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFH 84 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 6999999999999999999999999999987532110 111 111 111 11
Q ss_pred HHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEecCcCCCCCC
Q 008839 295 QMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 295 ~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.+ .|++++.+ ++..+. . +.+.|.+.+|+ ++.+|.+|+|||.+|....
T Consensus 85 ~~~~~~gv~~~~g-~~~~i~--~-~~~~v~~~~g~~~~~~d~lviATGs~p~~p~ 135 (441)
T PRK08010 85 NLADMPNIDVIDG-QAEFIN--N-HSLRVHRPEGNLEIHGEKIFINTGAQTVVPP 135 (441)
T ss_pred HHhhcCCcEEEEE-EEEEec--C-CEEEEEeCCCeEEEEeCEEEEcCCCcCCCCC
Confidence 2223 38888876 454443 2 23667777775 6999999999999986543
No 307
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.70 E-value=0.00042 Score=69.60 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
-..++..+.+.+++.|-+|.++..|++|.-+++..+.|.+.||+++.+..|+.-++.+
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence 3467888999999999999999999999988877789999999999998887665543
No 308
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.00088 Score=69.65 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=89.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC----------------------------------------C-
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR----------------------------------------G- 283 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~- 283 (551)
.++++|||+|++|+-.|..|.+.|.++++++|.+.+.. .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 68999999999999999999999999999998875411 0
Q ss_pred C-C-HHHHHHHHHHHHhcCc--EEEcCcccEEEEEcCCceEEEEECCC----eEEEeeEEEEecCcC--CCCCCCCcccc
Q 008839 284 F-D-EDIRDFVAEQMSLRGI--EFHTEESPQAILKSTDGSLSVKTNKG----TVDGFSHVMFATGRR--PNTKNLGLEKV 353 (551)
Q Consensus 284 ~-~-~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~~~~V~~~~G----~~i~~d~vi~a~G~~--p~~~~l~l~~~ 353 (551)
+ + .++.+.|....+.-++ .+.+++++.+++...++...|.+.++ +...+|.|++|+|.. |+...+ .
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~--~-- 161 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI--P-- 161 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC--C--
Confidence 0 0 1334445555666665 57888888888887633377777554 357799999999998 444431 1
Q ss_pred CeeecC-CCCeEeCCCCC-C---CCCcEEEeCcCCC
Q 008839 354 GVKMTK-NGAIEVDEYSG-T---AVPSIWAVGDVTD 384 (551)
Q Consensus 354 gl~~~~-~G~i~vd~~~~-t---~~~~vya~GD~~~ 384 (551)
+..++. .|.+.-....+ . ....|.++|--.+
T Consensus 162 g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred CCchhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 221221 13233222222 1 3477888885444
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=0.00022 Score=75.87 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=66.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCH-------------------------------HH
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDE-------------------------------DI 288 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~-------------------------------~~ 288 (551)
-.++|||+|+.|+.+|..+++.|.+|+++++.+.+... .+. .+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM 84 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 47999999999999999999999999999986433110 111 01
Q ss_pred H-----------HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCC
Q 008839 289 R-----------DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~-----------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~ 345 (551)
. +.+...+++.||+++.++ ..-+ +. ..+.|...+| .++.+|.+|+|||.+|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~--~~-~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 150 (471)
T PRK06467 85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT--GG-NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQ 150 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC-CEEEEecCCCceEEEEcCEEEEeCCCCCCC
Confidence 0 011234566799998773 2222 22 2366766666 468999999999999863
No 310
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.68 E-value=0.00028 Score=75.19 Aligned_cols=98 Identities=22% Similarity=0.201 Sum_probs=69.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC---------------------------C--C-----CHH----
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR---------------------------G--F-----DED---- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~---------------------------~--~-----~~~---- 287 (551)
-.++|||+|+.|+.+|..+++.|.+|.++++.. +.. . . ..+
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAKV 83 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHH
Confidence 479999999999999999999999999999752 100 0 0 001
Q ss_pred ----------HHHHHHHHHHhcCcEEEcCcccEEEEEc----CCceEEEEECCC--eEEEeeEEEEecCcCCCC
Q 008839 288 ----------IRDFVAEQMSLRGIEFHTEESPQAILKS----TDGSLSVKTNKG--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~----~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+++.||+++.+ .++.+... .++.+.|.+.+| +++.+|.+|+|||.+|+.
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 84 QERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 1112234566779999988 45555432 112367777777 479999999999999864
No 311
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.001 Score=69.83 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=89.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCcc----------------------CCC--C------C--HHHHHHH
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKV----------------------LRG--F------D--EDIRDFV 292 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~----------------------l~~--~------~--~~~~~~l 292 (551)
.+|+|||+|..|+-+|..|++.|.. +.++++.+.+ ++. + . .++.+.+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 4799999999999999999999998 9999987532 010 1 0 1256677
Q ss_pred HHHHHhcCcE--EEcCcccEEEEEcCCc-eEEEEECCCeE--EEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008839 293 AEQMSLRGIE--FHTEESPQAILKSTDG-SLSVKTNKGTV--DGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 293 ~~~l~~~Gv~--i~~~~~v~~i~~~~~~-~~~V~~~~G~~--i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
...+++.++. +.+++.|..+..++++ ..+|++++|.+ +.+|.||+|||....... .+-.|++. -.|.+.-..
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~i--P~~~G~~~-f~g~~~HS~ 165 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYI--PDFAGLDE-FKGRILHSA 165 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCC--CCCCCccC-CCceEEchh
Confidence 7788877664 4556666666655543 47788888765 459999999998432221 12223332 123333221
Q ss_pred ----CCCCCCCcEEEeCcCCC
Q 008839 368 ----YSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 368 ----~~~t~~~~vya~GD~~~ 384 (551)
...-.-++|-+||-.++
T Consensus 166 ~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 166 DWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred cCCCccccCCCeEEEECCCcc
Confidence 22335588999997766
No 312
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.65 E-value=0.00012 Score=78.06 Aligned_cols=91 Identities=26% Similarity=0.372 Sum_probs=69.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++++|||+|+.|+++|..|++.|.+|+++++.+.+. +. ++.++.....+.+++.||++++++.+...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 35799999999999999999999999999999877542 21 45566666678889999999999776311
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcC-CC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRR-PN 344 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~-p~ 344 (551)
+.. +.....+|.|++|+|.. |.
T Consensus 220 -------~~~-~~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 220 -------ISA-DELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred -------cCH-HHHHhhCCEEEEccCCCCCC
Confidence 100 11135689999999998 44
No 313
>PLN02697 lycopene epsilon cyclase
Probab=97.65 E-value=0.00037 Score=74.40 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=71.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCC------------C----------------------------
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF------------D---------------------------- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~------------~---------------------------- 285 (551)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+.... +
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 369999999999999999999999999998643221100 0
Q ss_pred ---HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 286 ---EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ---~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+.+.|+++ .+++|+++..++++...+.+.+|+++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 012234555667779998 567999998766653334567788899999999999977
No 314
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.64 E-value=0.00032 Score=67.35 Aligned_cols=38 Identities=34% Similarity=0.527 Sum_probs=33.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
.|||||+|.|||+|+..+...|-.|+|+|+ ...+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek---------~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEK---------AGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEec---------cCCcCCcc
Confidence 499999999999999999998888999995 56677765
No 315
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.63 E-value=0.00056 Score=72.86 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|+.|+.+|..|++.|.+|+|++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~ 213 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILE 213 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 589999999999999999999999999999
No 316
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.62 E-value=0.00051 Score=71.18 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=71.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC---------C---------------------C-----------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG---------F---------------------D----------- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~---------~---------------------~----------- 285 (551)
.|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... + +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3899999999999999999999999999976532100 0 0
Q ss_pred ----HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 286 ----EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ----~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+.+.|++++ ..++..+..+++....|++.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 1122335555677799886 44788887663444678888888899999999999987
No 317
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.61 E-value=0.00014 Score=81.80 Aligned_cols=93 Identities=25% Similarity=0.399 Sum_probs=69.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++.++.+...+.+++.||+++.++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~---- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG---- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC----
Confidence 35799999999999999999999999999999865321 21 355666666778889999999986541
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCc-CCCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGR-RPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~-~p~~ 345 (551)
..+++.+.....+|.||+|+|. .|..
T Consensus 506 -----~~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 -----KTITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -----CcCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 1133334344669999999998 4654
No 318
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.60 E-value=0.00053 Score=73.53 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=69.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC-cc-----------------------CC--------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK-KV-----------------------LR-------------------- 282 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~-~~-----------------------l~-------------------- 282 (551)
.|+|||||..|+++|..+++.|.+|.++++.. .+ +.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 69999999999999999999999999998863 11 00
Q ss_pred ----------CCCH-HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008839 283 ----------GFDE-DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 283 ----------~~~~-~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.+|. .+...+.+.+++. |++++ ...|.++..+++.+..|.+.+|..+.|+.||+|+|..
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000 0122344445544 78876 4578888766666567889999999999999999954
No 319
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.60 E-value=7.9e-05 Score=83.78 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANF--GASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~ 103 (551)
++|+|||||+||+++|+.|++. |++|+|+|+
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr 33 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVER 33 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 3799999999999999999997 899999993
No 320
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.60 E-value=7.7e-05 Score=80.12 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=29.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||||||+| +|++||+++++.|.+|+||||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk 37 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEA 37 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEec
Confidence 6899999999 999999999999999999994
No 321
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.59 E-value=0.00016 Score=79.83 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=68.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++.++.+...+.+++.|+++++++.+. +
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence 45799999999999999999999999999999877541 22 455666667778889999999986541 1
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.. ..+|.||+|+|..+.
T Consensus 269 ------dv~~~~~~-~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 ------DITLEELQ-KEFDAVLLAVGAQKA 291 (652)
T ss_pred ------ccCHHHHH-hhcCEEEEEcCCCCC
Confidence 01222221 358999999999764
No 322
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.59 E-value=6.7e-05 Score=79.77 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G 340 (551)
.+.+.+.+.+++ ++|+++++|++|+.++++ +.|.+.+|+.+.+|.||+|+.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEECCC
Confidence 344555555543 589999999999987776 778888888899999999874
No 323
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.58 E-value=0.00019 Score=82.59 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=69.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILKS 315 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 315 (551)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++.++.+...+.+++.||++++++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence 4799999999999999999999999999999876542 22 356777788888999999999996541
Q ss_pred CCceEEEEECCC-eEEEeeEEEEecCcC-CCC
Q 008839 316 TDGSLSVKTNKG-TVDGFSHVMFATGRR-PNT 345 (551)
Q Consensus 316 ~~~~~~V~~~~G-~~i~~d~vi~a~G~~-p~~ 345 (551)
. .+++.+- +...+|.||+|||.. |..
T Consensus 505 -~---~~~~~~l~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 -K---TFTVPQLMNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred -C---ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence 1 1111111 024589999999995 543
No 324
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.58 E-value=0.00034 Score=73.50 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=63.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||++|+.+|..|++.|.+|+++++ ...+..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~---------~~~~~~---------------------------------- 174 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHR---------SERILN---------------------------------- 174 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC---------CcccCc----------------------------------
Confidence 5799999999999999999999999999992 111000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCCE-E-EE-cCEEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPHT-V-DV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~~-v-~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
+..+ .. +...+.+.+++.||+++.+ .+..++... + .+ +++++.+|.+++|+|.+|..+
T Consensus 175 --~~~~-~~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 175 --KLFD-EE-----------MNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred --cccC-HH-----------HHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 0001 01 1122334556779998865 344454322 2 23 677899999999999988753
No 325
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.56 E-value=7.8e-05 Score=79.00 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCe-----EEEeeEEEEecCc
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGT-----VDGFSHVMFATGR 341 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~-----~i~~d~vi~a~G~ 341 (551)
..+.+.+.+.+++.|++|++++.|++|..++++ ++.|++.+|+ ++.+|.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 456788888899999999999999999865544 4567776654 7899999999865
No 326
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.56 E-value=0.00063 Score=72.14 Aligned_cols=94 Identities=24% Similarity=0.450 Sum_probs=63.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+.+|..+++.|.+|+|+++ ...+ +|
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~---------~~~l---------l~------------------------- 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEM---------APQL---------LP------------------------- 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEec---------CCCc---------Cc-------------------------
Confidence 5799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC--CEEEE--cC--EEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP--HTVDV--DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~--~~v~v--~g--~~~~~d~lviAtG~~p~~p 224 (551)
..+ .+ +...+.+.+++.||+++.+. +..++. ..+.+ ++ .++.+|.|++|+|.+|+..
T Consensus 208 ---~~d-~e-----------~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 208 ---GED-ED-----------IAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred ---ccc-HH-----------HHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 001 01 11223345667799998873 444432 23333 33 3689999999999998764
No 327
>PRK06116 glutathione reductase; Validated
Probab=97.56 E-value=0.00036 Score=73.83 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=65.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC------------------------------CCC--------H--
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------------------------GFD--------E-- 286 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------------------------~~~--------~-- 286 (551)
.++|||+|+.|+.+|..+++.|.+|+++++. .+.. .++ .
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAKL 84 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHHH
Confidence 6999999999999999999999999999975 2100 000 0
Q ss_pred ---------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 287 ---------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 287 ---------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.+.+.+.+++.||+++.+ ++..+. .. +|++ +|+++.+|.+|+|||.+|+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~---~v~~-~g~~~~~d~lViATGs~p~~p~ 147 (450)
T PRK06116 85 IANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AH---TVEV-NGERYTADHILIATGGRPSIPD 147 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CC---EEEE-CCEEEEeCEEEEecCCCCCCCC
Confidence 01122334466789999887 344442 22 2444 6778999999999999987643
No 328
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.55 E-value=0.00029 Score=79.96 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=66.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILKS 315 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 315 (551)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .+.+..+...+.+.+.||++++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 5689999999999999999999999999999876431 21 344555555677788899999884211
Q ss_pred CCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 316 TDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 316 ~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+...+|.||+|+|.++..
T Consensus 612 ------~~ve~l~~~gYDaVIIATGA~~~~ 635 (1012)
T TIGR03315 612 ------LTVAELKNQGYKYVILAIGAWKHG 635 (1012)
T ss_pred ------eEhhhhhcccccEEEECCCCCCCC
Confidence 112222345689999999998643
No 329
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.54 E-value=0.00022 Score=75.83 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=67.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.....+.+++.|+++++++.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 218 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK--- 218 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC---
Confidence 45799999999999999999999999999999876542 1 13555666667788899999999975531
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+ +.. +.....+|.||+|+|..+
T Consensus 219 ~------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 219 D------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred c------CCH-HHHHhhCCEEEEecCCCC
Confidence 0 000 111246899999999973
No 330
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.54 E-value=0.00062 Score=72.33 Aligned_cols=95 Identities=32% Similarity=0.483 Sum_probs=64.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+.+|..|++.|.+|+++++ ...+ +|
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~---------~~~~---------l~------------------------- 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEA---------LPRI---------LP------------------------- 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc---------CCCc---------CC-------------------------
Confidence 5799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE---cC---EEEEeCeEEEcCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV---DG---KLYSARHILISVGGRPFI 223 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v---~g---~~~~~d~lviAtG~~p~~ 223 (551)
..+ ++ +...+.+.+++.||+++.+ .+..++. ..+.+ ++ +.+.+|.+|+|+|.+|+.
T Consensus 210 ---~~~-~~-----------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 210 ---GED-KE-----------ISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred ---cCC-HH-----------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 001 01 1122334566779999887 3444432 23333 44 679999999999999876
Q ss_pred CC
Q 008839 224 PD 225 (551)
Q Consensus 224 p~ 225 (551)
..
T Consensus 275 ~~ 276 (462)
T PRK06416 275 EN 276 (462)
T ss_pred CC
Confidence 53
No 331
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.54 E-value=0.00084 Score=70.27 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=70.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCccCCC-----CCH-------------HH-------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKVLRG-----FDE-------------DI------------------- 288 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~l~~-----~~~-------------~~------------------- 288 (551)
+|+|||+|..|+-+|..|++.| .+|+++++.+.+... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 599999987653100 000 00
Q ss_pred ----------------------HHHHHHHHHhc--CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 289 ----------------------RDFVAEQMSLR--GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 289 ----------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+.+.|.+. ++.++++++|++++.++++ +.|.+.+|+++++|.||.|.|.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEEcCCCEEEeeEEEECCCccHH
Confidence 01122222221 4567889999999887666 7888899989999999999998764
No 332
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.53 E-value=0.00024 Score=78.35 Aligned_cols=91 Identities=23% Similarity=0.347 Sum_probs=70.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 46899999999999999999999999999999887532 1 25667777677888999999999976631
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+ +.+.+. ...+|.|++|+|..+.
T Consensus 386 --~----~~~~~l-~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D----ITFSDL-TSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c----CCHHHH-HhcCCEEEEeCCCCCC
Confidence 0 111111 2468999999998754
No 333
>PRK09897 hypothetical protein; Provisional
Probab=97.52 E-value=0.0012 Score=70.51 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=68.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCCC--C---------------------CHHHHHH---------
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLRG--F---------------------DEDIRDF--------- 291 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~~--~---------------------~~~~~~~--------- 291 (551)
++|+|||+|+.|+-++..|.+.+ .+|++++++..+..+ + .+.+.++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999997764 479999985543211 0 0001111
Q ss_pred -------------------------------HHHHHHhcC--cEEEcCcccEEEEEcCCceEEEEECC-CeEEEeeEEEE
Q 008839 292 -------------------------------VAEQMSLRG--IEFHTEESPQAILKSTDGSLSVKTNK-GTVDGFSHVMF 337 (551)
Q Consensus 292 -------------------------------l~~~l~~~G--v~i~~~~~v~~i~~~~~~~~~V~~~~-G~~i~~d~vi~ 337 (551)
+.+.+.+.| +.++.+++|++++.++++ +.|.+.+ |..+.+|.||+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EEEEECCCCeEEEcCEEEE
Confidence 222334555 788889899999887666 7777755 46799999999
Q ss_pred ecCcCCC
Q 008839 338 ATGRRPN 344 (551)
Q Consensus 338 a~G~~p~ 344 (551)
|+|..+.
T Consensus 161 AtGh~~p 167 (534)
T PRK09897 161 ATGHVWP 167 (534)
T ss_pred CCCCCCC
Confidence 9998554
No 334
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.51 E-value=0.0043 Score=61.30 Aligned_cols=95 Identities=25% Similarity=0.420 Sum_probs=65.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||..||..+.--.+.|.+|++|| ..+.+||.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VE---------f~~~i~~~--------------------------------- 249 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVE---------FLDQIGGV--------------------------------- 249 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEE---------ehhhhccc---------------------------------
Confidence 579999999999999999999999999999 12333332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEe---cCCEEE--E------cCEEEEeCeEEEcCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIV---DPHTVD--V------DGKLYSARHILISVGGR 220 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i---~~~~v~--v------~g~~~~~d~lviAtG~~ 220 (551)
.|. ++...+++.+.+.+++|..++ +... ++..+. + ..+++++|.+++++|-+
T Consensus 250 ----mD~------------Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 250 ----MDG------------EISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred ----cCH------------HHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 111 122233456677799998874 2222 222333 3 23578999999999999
Q ss_pred CCCCC
Q 008839 221 PFIPD 225 (551)
Q Consensus 221 p~~p~ 225 (551)
|+.-.
T Consensus 314 P~t~G 318 (506)
T KOG1335|consen 314 PFTEG 318 (506)
T ss_pred ccccC
Confidence 87643
No 335
>PLN02676 polyamine oxidase
Probab=97.50 E-value=0.00012 Score=77.80 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=36.0
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.+|++++.|++|..++++ +.|++.+|+++.+|.||++++.
T Consensus 245 ~~I~l~~~V~~I~~~~~g-V~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNG-VTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCc-EEEEECCCCEEEeCEEEEccCh
Confidence 679999999999988777 8899999988999999999864
No 336
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.49 E-value=0.00024 Score=74.11 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILKS 315 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 315 (551)
+++|+|||+|+.|+.+|..|++.|+.|+++++.+..- |. ++.++.+...+.|++.|++|+.++++-.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---- 198 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---- 198 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC----
Confidence 5899999999999999999999999999999887542 22 5778889999999999999999966531
Q ss_pred CCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 316 TDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 316 ~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
.+++++= .-+.|.|++++|..-
T Consensus 199 -----~it~~~L-~~e~Dav~l~~G~~~ 220 (457)
T COG0493 199 -----DITLEEL-LKEYDAVFLATGAGK 220 (457)
T ss_pred -----cCCHHHH-HHhhCEEEEeccccC
Confidence 0111111 134599999999743
No 337
>PRK14694 putative mercuric reductase; Provisional
Probab=97.49 E-value=0.00098 Score=70.90 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=63.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||+|+.|+..|..|++.|.+|++++ ...+ +|
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~----------~~~~---------l~------------------------- 214 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLA----------RSRV---------LS------------------------- 214 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEE----------CCCC---------CC-------------------------
Confidence 579999999999999999999999999998 2110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p 224 (551)
..+ ++ +...+.+.+++.||+++.+ .+..++ ...+.+ ++.++.+|.+++|+|.+|+..
T Consensus 215 ---~~~-~~-----------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 215 ---QED-PA-----------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred ---CCC-HH-----------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 001 11 1122334566779999886 444443 222333 455799999999999998764
No 338
>PLN02985 squalene monooxygenase
Probab=97.47 E-value=0.00012 Score=78.44 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
...+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr 74 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIER 74 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 3468999999999999999999999999999994
No 339
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.47 E-value=0.00054 Score=71.48 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-.|..+++.|.+|+|||
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie 203 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVE 203 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEe
Confidence 469999999999999999999999999999
No 340
>PLN02529 lysine-specific histone demethylase 1
Probab=97.47 E-value=0.00014 Score=80.09 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=31.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
..+||+|||||++|++||..|++.|++|+|+|+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~ 191 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEG 191 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEec
Confidence 468999999999999999999999999999993
No 341
>PRK06370 mercuric reductase; Validated
Probab=97.47 E-value=0.0011 Score=70.44 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+.+|..|++.|.+|+|++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~ 201 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIE 201 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 589999999999999999999999999999
No 342
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.45 E-value=0.00031 Score=77.77 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=67.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.|++++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46799999999999999999999999999999876531 2 14566666667788899999999975521
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+ +.+.+. ...+|.|++|+|..+.
T Consensus 403 --~----i~~~~~-~~~~DavilAtGa~~~ 425 (654)
T PRK12769 403 --D----ISLESL-LEDYDAVFVGVGTYRS 425 (654)
T ss_pred --c----CCHHHH-HhcCCEEEEeCCCCCC
Confidence 0 111111 1368999999998653
No 343
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.45 E-value=0.00047 Score=71.80 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHH-HhCCCeEEEEeecCccCCC-------C---CHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIF-SGLTSEVHVFIRQKKVLRG-------F---DEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l-~~~g~~Vtlv~~~~~~l~~-------~---~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+... . ...+...+.+.+...+++++.|..|-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999965 5679999999998876421 1 123444455556667888875433211
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.++.++= .-.+|.||+|+|..+.
T Consensus 117 --------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 --------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred --------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 0111111 2368999999998864
No 344
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.44 E-value=0.00044 Score=70.27 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=76.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccCC----------CCCHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVLR----------GFDEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l~----------~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.++++|+|+|+.|.-++..+++.|. +++++.+...+.. .....+.....+.+++.||++++++.|+.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence 4689999999998888889988875 6777776543211 122334445567899999999999999999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+-.. .+|.+.+|++++++.+++|||..|..
T Consensus 154 D~~~---K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 154 DLAS---KTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred eccc---cEEEeCCCceeecceEEEeecCcccc
Confidence 8765 45899999999999999999996665
No 345
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.44 E-value=0.0003 Score=77.37 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=32.5
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q 008839 68 PSHYDFDLFTIGAGSGGVRASRFAAN-FGASVAICEL 103 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~ 103 (551)
.|..++||+||||||+||++|..|++ .|.+|+|||+
T Consensus 28 ~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 28 DLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred cCCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 35567999999999999999999999 5999999994
No 346
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.43 E-value=0.00066 Score=52.92 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|+|||||+.|+-+|..|++.|.+|+||+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEe
Confidence 48999999999999999999999999999
No 347
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.39 E-value=0.0012 Score=70.06 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||+|+.|+.+|..|++.|.+|+|++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~ 196 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQ 196 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 579999999999999999999999999999
No 348
>PRK06753 hypothetical protein; Provisional
Probab=97.39 E-value=0.00015 Score=74.84 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.||+|||||++|+++|+.|++.|++|+|+|+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 3799999999999999999999999999994
No 349
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.38 E-value=0.00058 Score=72.91 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=68.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~ 324 (551)
+++++|+|+|.+|+++|..|.+.|.+|+++++.+. +....+.+.|++.||+++.+..+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~-------------- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT-------------- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc--------------
Confidence 57899999999999999999999999999987542 234456677888999999875442
Q ss_pred CCCeEEEeeEEEEecCcCCCCCCC-CccccCeee
Q 008839 325 NKGTVDGFSHVMFATGRRPNTKNL-GLEKVGVKM 357 (551)
Q Consensus 325 ~~G~~i~~d~vi~a~G~~p~~~~l-~l~~~gl~~ 357 (551)
....+|.||+++|..|+..++ .+++.|+++
T Consensus 75 ---~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 ---LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ---ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 014589999999999998753 123445554
No 350
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.37 E-value=0.0012 Score=67.88 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=70.3
Q ss_pred EEEEcCcHHHHHHHHHH--HhCCCeEEEEeecCcc--CC-----CCCHH-------------------------------
Q 008839 248 IAIVGGGYIALEFAGIF--SGLTSEVHVFIRQKKV--LR-----GFDED------------------------------- 287 (551)
Q Consensus 248 vvViG~G~~g~e~a~~l--~~~g~~Vtlv~~~~~~--l~-----~~~~~------------------------------- 287 (551)
|+|||+|+.|+-+|..| .+.|.+|.++++.+.. -+ ...++
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 79999999999999999 7789999999876543 10 01111
Q ss_pred -------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 288 -------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 288 -------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+.+.+.+.+++ +..+..+++|++|+.++++ ..|.+.+|+++.++.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~-~~~~~~~~~V~~i~~~~~~-~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAA-GGVIRLNARVTSIEETGDG-VLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhh-CCeEEEccEEEEEEecCce-EEEEECCCCEEEeeEEEECCCcccc
Confidence 11114444553 4456677899999987775 6788999999999999999996654
No 351
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.35 E-value=0.00026 Score=71.88 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=35.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCCCCeec
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
...+|||||||.|||+||.+|.+.| .+|+|+|. .+.+||...
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa---------~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA---------SDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEe---------ccccCceEe
Confidence 3468999999999999999999766 58999994 778898864
No 352
>PTZ00367 squalene epoxidase; Provisional
Probab=97.34 E-value=0.00019 Score=77.44 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=31.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||+|||||++|+++|..|++.|++|+|+|+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr 64 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 368999999999999999999999999999994
No 353
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.32 E-value=0.00024 Score=75.47 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC--Cc---eEEEEECCC---eEEEeeEEEEecCcCCCCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKST--DG---SLSVKTNKG---TVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~---~~~V~~~~G---~~i~~d~vi~a~G~~p~~~~ 347 (551)
..-+.+.+.+.|++.|++|+++++|++|+.++ ++ +..|.+.+| +++.+|.||+|++..-...+
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL 288 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence 44456778899999999999999999998753 22 344556544 56899999999986433333
No 354
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.0019 Score=68.61 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCHH-----------------------------HH--
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDED-----------------------------IR-- 289 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~~-----------------------------~~-- 289 (551)
.++|||+|+.|+..|..+++.|.+|+++++.+.+-.. .+.. +.
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 84 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQM 84 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHHH
Confidence 6999999999999999999999999999964322110 0000 00
Q ss_pred ------------HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCC
Q 008839 290 ------------DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 290 ------------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...++..||+++.+. .++.. ...+.|...+|+ ++.+|.+|+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 85 MKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLDG--VGKVVVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEcc--CCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 111223344566666653 23332 222556666664 6999999999999985
No 355
>PLN02507 glutathione reductase
Probab=97.32 E-value=0.0019 Score=69.12 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=64.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||+.|+-.|..+++.|.+|+|++. ...+ +|
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~---------~~~~---------l~------------------------- 240 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFR---------KELP---------LR------------------------- 240 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEe---------cCCc---------Cc-------------------------
Confidence 5799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE---cCEEEEeCeEEEcCCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV---DGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v---~g~~~~~d~lviAtG~~p~~p~ 225 (551)
.++ .+ +...+.+.+++.||+++.+ .+..++ ...+.+ +++++.+|.+++|+|.+|+...
T Consensus 241 ---~~d-~~-----------~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 241 ---GFD-DE-----------MRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred ---ccC-HH-----------HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 001 01 1122334566779999877 344443 223333 5678999999999999987653
No 356
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.30 E-value=0.0012 Score=69.91 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=63.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||..|+-.|..|++.|.+|+|++. ...+. +
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~---------~~~il---------~------------------------- 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIR---------HERVL---------R------------------------- 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEec---------CCCCC---------c-------------------------
Confidence 5799999999999999999999999999992 11100 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC---C--EEEE-cC-EEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP---H--TVDV-DG-KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~---~--~v~v-~g-~~~~~d~lviAtG~~p~~p 224 (551)
.++. . +...+.+.+++.||+++.+. +..+.. . .+.+ ++ ..+.+|.+++|+|.+|+..
T Consensus 204 ---~~d~-~-----------~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 204 ---SFDS-M-----------ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred ---ccCH-H-----------HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 0010 0 11223345666799988763 333421 2 2333 45 5799999999999998865
No 357
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.30 E-value=0.0012 Score=67.80 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=64.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccCC---------CCCHHHHH-------------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVLR---------GFDEDIRD------------------------- 290 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l~---------~~~~~~~~------------------------- 290 (551)
.|+|||+|..|+.+|..|.+. |.+|.++++.+.+.+ ..++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 379999999999999999987 999999998764322 11111111
Q ss_pred ---------HHHHH-HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 291 ---------FVAEQ-MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 291 ---------~l~~~-l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+. +++.+..++.+++|+++. .++ |++.+|+++.+|.||.|.|..+..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~---v~l~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADG---VDLAPGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCE---EEECCCCEEEeeEEEECCCCCCCc
Confidence 01122 222244477788888883 333 445788899999999999988643
No 358
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.30 E-value=0.0026 Score=65.97 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=69.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec-Ccc-----------CCCC------------------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ-KKV-----------LRGF------------------------------ 284 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~-~~~-----------l~~~------------------------------ 284 (551)
.|+|||+|+.|+-+|..|++.|.+|.++++. +.. +..+
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999986 210 0000
Q ss_pred --------CH-HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC------C--eEEEeeEEEEecCcCCCC
Q 008839 285 --------DE-DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK------G--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 285 --------~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~------G--~~i~~d~vi~a~G~~p~~ 345 (551)
+. .+-+.+.+...+.|++++.+ .++++..++++ +.|++.+ | .++.+|.||.|.|.....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 00 11123455556779999765 68888776665 5666543 2 368999999999986643
No 359
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.28 E-value=0.0025 Score=68.31 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=70.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc------------------CCCC---C--------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV------------------LRGF---D-------------------- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~------------------l~~~---~-------------------- 285 (551)
.|+|||+|..|+++|..+++.|.+|.++++.... ...+ +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 4899999999999999999999999999875211 0000 0
Q ss_pred -------------H-HHHHHHHHHHHhc-CcEEEcCcccEEEEEc-CCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 286 -------------E-DIRDFVAEQMSLR-GIEFHTEESPQAILKS-TDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 -------------~-~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~-~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+ .+...+.+.+++. |++++.+ .++++..+ ++.+..|.+.+|..+.||.||+|+|...+
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 0 1112345556665 7888765 67777554 44557789999989999999999998853
No 360
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.27 E-value=0.00033 Score=77.72 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
....+|+|||||++|++||+.|++.|++|+|+|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~ 269 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEG 269 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 3467999999999999999999999999999994
No 361
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.26 E-value=0.0011 Score=65.28 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
...+||+|||||.+|.+.|+.|++.|.+|.+||
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIE 75 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIE 75 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEe
Confidence 346899999999999999999999999999999
No 362
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.25 E-value=0.00029 Score=73.96 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=27.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC------------C--------------------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL------------R-------------------------------- 282 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l------------~-------------------------------- 282 (551)
.|+|||||+.|+-.|..+++.|.+|.|+++.+.+. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 48999999999999999999999999999877531 0
Q ss_pred -----CCCHH-HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---CeEEEeeEEEEecCc
Q 008839 283 -----GFDED-IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---GTVDGFSHVMFATGR 341 (551)
Q Consensus 283 -----~~~~~-~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G~~i~~d~vi~a~G~ 341 (551)
.++++ +...+.+.+++.|+++++++.|.++..+++.+..|.+.+ ..++.++.+|-|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01111 112255666788999999999999998876655566644 347999999999994
No 363
>PRK14727 putative mercuric reductase; Provisional
Probab=97.25 E-value=0.003 Score=67.35 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=62.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||+|+.|+-.|..|++.|.+|+|++ ...+ +|
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~----------~~~~---------l~------------------------- 224 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILA----------RSTL---------LF------------------------- 224 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEE----------cCCC---------CC-------------------------
Confidence 579999999999999999999999999998 2110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p 224 (551)
..+ + .+...+.+.+++.||+++.+ .+..+. ...+.+ ++.++.+|.+++|+|..|+..
T Consensus 225 ---~~d-~-----------~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 225 ---RED-P-----------LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTH 286 (479)
T ss_pred ---cch-H-----------HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCcc
Confidence 001 0 11122334566779998876 343332 233333 445689999999999998764
No 364
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.25 E-value=0.0023 Score=68.10 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+.+|..|++.|.+|+|+|
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~ 202 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVE 202 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEe
Confidence 479999999999999999999999999999
No 365
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00091 Score=67.64 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.|||||||||.||..||..+++.|.+.+|+..
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 59999999999999999999999999999983
No 366
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.24 E-value=0.00023 Score=70.81 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEE--CCCe----EEEeeEEEEecCcCCCCCCCCccccCe
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKT--NKGT----VDGFSHVMFATGRRPNTKNLGLEKVGV 355 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~--~~G~----~i~~d~vi~a~G~~p~~~~l~l~~~gl 355 (551)
...+...+++.+++++.++.|++|..+ ++....|++ .++. .+.++.||+|.|.--.+.+ |..+|+
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L--Ll~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL--LLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH--HHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhh--hccccc
Confidence 445666666669999999999999554 444444544 4443 4678999999997555444 444455
No 367
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.23 E-value=0.00089 Score=72.93 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=65.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCccc-EEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESP-QAIL 313 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v-~~i~ 313 (551)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+. + .++.++.+.-.+.+++.|++++.++.+ .++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 46899999999999999999999999999999766432 1 134555555566778899999988654 2221
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.+. + ...+|.|++|+|..+.
T Consensus 216 ~~~-------~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 LEQ-------L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred HHH-------H----HhhCCEEEEeeCCCCC
Confidence 110 0 1247999999998754
No 368
>PRK13984 putative oxidoreductase; Provisional
Probab=97.21 E-value=0.00092 Score=73.53 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=67.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
..++++|||+|+.|+.+|..|.+.|.+|+++++.+... +. +..++.....+.+++.|++++.++.|..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 46789999999999999999999999999998876531 11 34455555567888999999999766320
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008839 315 STDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+...+. ...+|.||+|+|..+
T Consensus 360 -------~~~~~~-~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 -------IPLEEL-REKHDAVFLSTGFTL 380 (604)
T ss_pred -------CCHHHH-HhcCCEEEEEcCcCC
Confidence 111111 257999999999864
No 369
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.21 E-value=0.0037 Score=55.70 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=33.8
Q ss_pred CcEEE-cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008839 300 GIEFH-TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 300 Gv~i~-~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
|+++. ...+|++|...+++ ..|.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeCEEEECCCC
Confidence 55543 35589999988877 7889999999999999999996
No 370
>PRK07846 mycothione reductase; Reviewed
Probab=97.19 E-value=0.0033 Score=66.48 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+.+|..|++.|.+|+|++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~ 196 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVN 196 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 589999999999999999999999999999
No 371
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.18 E-value=0.0029 Score=60.10 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCC------CcEEEEc
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFG------ASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G------~~V~liE 102 (551)
+.+..+|+|+|||+.|..+|+.|++++ ..|+|||
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifE 46 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFE 46 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEe
Confidence 444578999999999999999999976 7899999
No 372
>PRK13748 putative mercuric reductase; Provisional
Probab=97.16 E-value=0.0034 Score=68.47 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=63.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+-.|..|++.|.+|+||+ +..+ +|
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~----------~~~~---------l~------------------------- 306 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILA----------RSTL---------FF------------------------- 306 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEe----------cCcc---------cc-------------------------
Confidence 579999999999999999999999999999 2110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p 224 (551)
..+ .. +...+.+.+++.||+++.+ .+..+. ...+.+ ++..+.+|.+++|+|.+|+..
T Consensus 307 ---~~d-~~-----------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 307 ---RED-PA-----------IGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR 368 (561)
T ss_pred ---ccC-HH-----------HHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCC
Confidence 001 00 1122334566779998876 344442 223333 445799999999999998764
No 373
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.16 E-value=0.00045 Score=73.70 Aligned_cols=31 Identities=32% Similarity=0.647 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|||+|||+|++|+.+|..|++.|++|++||+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~ 31 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEI 31 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEec
Confidence 6999999999999999999999999999993
No 374
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.15 E-value=0.0031 Score=67.57 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=62.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+-.|..|++.|.+|+|++ ...+. +
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~----------~~~~l---------~------------------------- 218 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAV----------RSIPL---------R------------------------- 218 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEE----------cCccc---------c-------------------------
Confidence 479999999999999999999999999998 21100 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec--CC--EEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008839 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD--PH--TVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~--~~--~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
..+.. +...+.+.+++.||+++.+. +..+. .. .+.+ +++.+.+|.|++|+|.+|+..
T Consensus 219 ---~~d~~------------~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 219 ---GFDRQ------------CSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred ---cCCHH------------HHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 00100 11223345667799988773 22232 12 2333 577889999999999998765
No 375
>PTZ00058 glutathione reductase; Provisional
Probab=97.14 E-value=0.0025 Score=68.88 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=29.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||||..|+..|..+++.|.+|+|++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~ 267 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFA 267 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence 3579999999999999999999999999999
No 376
>PLN02487 zeta-carotene desaturase
Probab=97.13 E-value=0.00052 Score=73.97 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC--Cc---eEEEEE---CCCeEEEeeEEEEecCcC
Q 008839 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKST--DG---SLSVKT---NKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 284 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~---~~~V~~---~~G~~i~~d~vi~a~G~~ 342 (551)
+...+.+.+.+.++++|++|+++++|++|+.+. ++ +..|++ .+++.+.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688899999999999999999999998863 22 355666 344568999999999874
No 377
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.10 E-value=0.00061 Score=71.29 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEcc
Q 008839 74 DLFTIGAGSGGVRASRFAANFG-ASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~ 103 (551)
+|+|||||++||++|..|++.| .+|+|+|+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEA 32 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999988 59999994
No 378
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.09 E-value=0.003 Score=66.86 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+..|..|++.|.+|+||+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~ 199 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVN 199 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999999999999999999999999
No 379
>PRK02106 choline dehydrogenase; Validated
Probab=97.08 E-value=0.00053 Score=74.64 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=31.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAAN-FGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~ 103 (551)
...||+||||||++|+.+|.+|++ .|++|+|||+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEa 37 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEA 37 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecC
Confidence 346999999999999999999999 8999999994
No 380
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.07 E-value=0.0043 Score=66.11 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-+|..|++.|.+|+|++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~ 210 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMV 210 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEE
Confidence 479999999999999999999999999998
No 381
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.06 E-value=0.0028 Score=67.47 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=61.1
Q ss_pred ccEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008839 73 FDLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+++|||||+.|+..|..++. .|.+|+|+|. ...+. |
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~---------~~~il---------~---------------------- 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYR---------NNMIL---------R---------------------- 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEec---------CCccc---------c----------------------
Confidence 579999999999999976655 4999999992 11100 0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec---CC--EEEE-cCEEEEeCeEEEcCCCCCC
Q 008839 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD---PH--TVDV-DGKLYSARHILISVGGRPF 222 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~---~~--~v~v-~g~~~~~d~lviAtG~~p~ 222 (551)
..+ + .+...+.+.+++.||+++.+. +..+. .. .+.+ ++..+.+|.+++|+|.+|+
T Consensus 228 ------~~d-~-----------~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 228 ------GFD-S-----------TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred ------ccC-H-----------HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 011 1 111223344566799988864 33343 12 2333 5678999999999999887
Q ss_pred CC
Q 008839 223 IP 224 (551)
Q Consensus 223 ~p 224 (551)
..
T Consensus 290 ~~ 291 (486)
T TIGR01423 290 TQ 291 (486)
T ss_pred cc
Confidence 54
No 382
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.03 E-value=0.0042 Score=71.99 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=69.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC----------C-CHHHHHHHHHHHHhc-CcEEEcCcccEEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG----------F-DEDIRDFVAEQMSLR-GIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~----------~-~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i 312 (551)
..+|+|||+|+.|+..|..+.+.|.+|++++..+.+... . ..++...+.+.+++. +++++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 467999999999999999999999999999987644211 1 123334455556655 5999999988887
Q ss_pred EEcCCceEEEE-E--------C----CC-eEEEeeEEEEecCcCCCCC
Q 008839 313 LKSTDGSLSVK-T--------N----KG-TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 313 ~~~~~~~~~V~-~--------~----~G-~~i~~d~vi~a~G~~p~~~ 346 (551)
.... ....+. . . +. .++.+|.||+|||..+...
T Consensus 243 ~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YDHN-TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ecCC-eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 5321 111111 0 0 11 1588999999999987654
No 383
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.02 E-value=0.0069 Score=64.34 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||+|+.|+..|..|++.|.+|++++
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~ 199 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFE 199 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEe
Confidence 579999999999999999999999999999
No 384
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.01 E-value=0.0069 Score=62.94 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=65.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC------------C--CCH--------------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------G--FDE-------------------------- 286 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------~--~~~-------------------------- 286 (551)
+|+|||+|+.|+-+|..|++.|.+|.++++...... . +.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 689999999999999999999999999997643100 0 000
Q ss_pred ------------HHHHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEE--CC-----C--eEEEeeEEEEecCcCC
Q 008839 287 ------------DIRDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKT--NK-----G--TVDGFSHVMFATGRRP 343 (551)
Q Consensus 287 ------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~--~~-----G--~~i~~d~vi~a~G~~p 343 (551)
.+-+.+.+...+.|++++.++ +.++... .+....|++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 011124455667899998774 6666431 222244443 22 3 3689999999999877
Q ss_pred CC
Q 008839 344 NT 345 (551)
Q Consensus 344 ~~ 345 (551)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 54
No 385
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.00 E-value=0.00069 Score=69.87 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
||+|||||++|+.+|..|++.|++|+|||
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE 30 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYE 30 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEe
Confidence 79999999999999999999999999999
No 386
>PLN03000 amine oxidase
Probab=96.96 E-value=0.00093 Score=74.30 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=30.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
..||+|||||++|+.+|..|++.|++|+|+|+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~ 215 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEG 215 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 57999999999999999999999999999993
No 387
>PLN02976 amine oxidase
Probab=96.94 E-value=0.001 Score=76.67 Aligned_cols=44 Identities=30% Similarity=0.448 Sum_probs=37.4
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
....+||+|||||++|+++|+.|++.|++|+|+|+ ...+||.+.
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa---------~~~vGGri~ 733 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEA---------RSRIGGRVY 733 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEee---------ccCCCCcee
Confidence 34468999999999999999999999999999993 455777763
No 388
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.91 E-value=0.0013 Score=63.63 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=35.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
.+||+|||+|.|||-||.+|+..|++|+|+|. +-...+||+.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQ-------EgeqnlGGQA 46 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQ-------EGEQNLGGQA 46 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcc-------ccccccccee
Confidence 58999999999999999999999999999992 2244566664
No 389
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0092 Score=54.66 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=72.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEe--------------------ecCccCCC-CCHHHHHHHHHHHHhcCcEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFI--------------------RQKKVLRG-FDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~--------------------~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i 303 (551)
..+|+|||+|+.+--.|-++.+...+-.+++ .-+.+... ..+++.+.+.++-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 3589999999999999988887644433333 22222222 56788899999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.. .|.+++....- ..+.++ .+.+.+|.||+|||.....-.
T Consensus 88 ~tE-tVskv~~sskp-F~l~td-~~~v~~~avI~atGAsAkRl~ 128 (322)
T KOG0404|consen 88 ITE-TVSKVDLSSKP-FKLWTD-ARPVTADAVILATGASAKRLH 128 (322)
T ss_pred eee-ehhhccccCCC-eEEEec-CCceeeeeEEEecccceeeee
Confidence 987 78888765543 556654 446999999999998765543
No 390
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.89 E-value=0.0011 Score=64.39 Aligned_cols=51 Identities=29% Similarity=0.455 Sum_probs=42.3
Q ss_pred CCccEEEECCChHHHHHHHHHHh----CCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008839 71 YDFDLFTIGAGSGGVRASRFAAN----FGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~----~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
.++||+|||||..|.+.|+-|.+ .|++|+++|+...+.+....-..||.|-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~Q 139 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQ 139 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceee
Confidence 36899999999999999999987 5799999996655656666667888875
No 391
>PLN02546 glutathione reductase
Probab=96.87 E-value=0.0069 Score=65.46 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+..|..|++.|.+|+|++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~ 282 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFI 282 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEE
Confidence 589999999999999999999999999999
No 392
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.83 E-value=0.013 Score=54.11 Aligned_cols=101 Identities=23% Similarity=0.220 Sum_probs=64.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CC--------HH-----------------------
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FD--------ED----------------------- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~--------~~----------------------- 287 (551)
-.|+|+|+|+.|+-+|..|++.|.+|.++++...+-.. |. ..
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~ 97 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE 97 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence 46999999999999999999999999999987643211 10 11
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEEC------CC-----eEEEeeEEEEecCcCCCCC
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKTN------KG-----TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~~------~G-----~~i~~d~vi~a~G~~p~~~ 346 (551)
....+.....+.|++++..+.|+++...+ +.+..|.++ .| -.+++..||-|||.....-
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 11113333345899999999999987665 443344432 22 3789999999999977653
No 393
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.83 E-value=0.0013 Score=65.96 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=30.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+.+|+|||||.+|+++|..|.+.|++|+|+|+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 35899999999999999999999999999993
No 394
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.81 E-value=0.0023 Score=71.71 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008839 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
..+++|+|||+|+.|+.+|..|.+.|.+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35789999999999999999999999999999975
No 395
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.77 E-value=0.008 Score=60.41 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=74.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--CCC---------CHHHHHHHHHHHHhc--CcEEEcCcccE
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--RGF---------DEDIRDFVAEQMSLR--GIEFHTEESPQ 310 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l--~~~---------~~~~~~~l~~~l~~~--Gv~i~~~~~v~ 310 (551)
..++|+|+|.|..|+-+...|-..-.+|+++.++..++ |.+ -+.+.+-+....+.. +++++. .+-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe-cccE
Confidence 35799999999999999999888889999999988764 112 345556666665554 455554 4667
Q ss_pred EEEEcCCceEEEE--ECCC----eEEEeeEEEEecCcCCCCCCC
Q 008839 311 AILKSTDGSLSVK--TNKG----TVDGFSHVMFATGRRPNTKNL 348 (551)
Q Consensus 311 ~i~~~~~~~~~V~--~~~G----~~i~~d~vi~a~G~~p~~~~l 348 (551)
+|+.+.+. +.+. +.++ -.+.+|.+|+|+|..|++..+
T Consensus 133 ~iDp~~k~-V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491)
T KOG2495|consen 133 KIDPDNKK-VHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491)
T ss_pred eecccccE-EEEeeeccCCCcceeeecccEEEEeccCCCCCCCC
Confidence 77776554 4333 3444 268899999999999998654
No 396
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.77 E-value=0.019 Score=60.54 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC------------C--CCHH-----------------------
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------G--FDED----------------------- 287 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------~--~~~~----------------------- 287 (551)
.-+|+|||+|+.|+-+|..|++.|.+|.++++...... . +.++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 45899999999999999999999999999997642100 0 0101
Q ss_pred ---------------HHHHHHHHHHhcCcEEEcCcccEEEEEcC--CceEEEEECC-------C--eEEEeeEEEEecCc
Q 008839 288 ---------------IRDFVAEQMSLRGIEFHTEESPQAILKST--DGSLSVKTNK-------G--TVDGFSHVMFATGR 341 (551)
Q Consensus 288 ---------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~~~V~~~~-------G--~~i~~d~vi~a~G~ 341 (551)
+-+.+.+..++.|++++.+ .+.++.... ++.+.|++.+ | .++.+|.||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 1122445556779999766 577775422 2224455422 3 47999999999998
Q ss_pred CCCC
Q 008839 342 RPNT 345 (551)
Q Consensus 342 ~p~~ 345 (551)
....
T Consensus 198 ~S~v 201 (450)
T PLN00093 198 NSRV 201 (450)
T ss_pred chHH
Confidence 6643
No 397
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.75 E-value=0.0076 Score=64.68 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=75.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCcc----------CCC--CCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 246 EKIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKV----------LRG--FDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~----------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
.+++|||.|..|.-+...+.+. -.+||++...++. ++. --+++.-.-.++.+++||+++.+.++.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 5799999999999888877774 3468887654432 111 112333334567899999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.|..+. ..|.++.|.++.+|.+|+|||..|....
T Consensus 84 ~idr~~---k~V~t~~g~~~~YDkLilATGS~pfi~P 117 (793)
T COG1251 84 QIDRAN---KVVTTDAGRTVSYDKLIIATGSYPFILP 117 (793)
T ss_pred EeccCc---ceEEccCCcEeecceeEEecCccccccC
Confidence 998765 4588999999999999999999998765
No 398
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.75 E-value=0.0041 Score=58.73 Aligned_cols=93 Identities=25% Similarity=0.283 Sum_probs=67.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC--------------------CCCHHHHHH---------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR--------------------GFDEDIRDF--------------- 291 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~--------------------~~~~~~~~~--------------- 291 (551)
+|+|||+|..|+-+|..|+..|.+|++++++..+.. .-++.+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 589999999999999999999999999997653310 011111111
Q ss_pred ---------------------------HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEecCc
Q 008839 292 ---------------------------VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGR 341 (551)
Q Consensus 292 ---------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~ 341 (551)
+.+.| ....+|+++++|+++...++. .++.+++|. ...+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~~-W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDND-WTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCCe-eEEEecCCCcccccceEEEecCC
Confidence 22222 234678889999999887655 889997664 5789999999865
No 399
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.75 E-value=0.00047 Score=62.25 Aligned_cols=31 Identities=39% Similarity=0.508 Sum_probs=28.3
Q ss_pred CccEEEECCChHHHHHHHHHHh--CCCcEEEEc
Q 008839 72 DFDLFTIGAGSGGVRASRFAAN--FGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE 102 (551)
.-||||+|+|.+||+||+.+++ +..+|.|||
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE 108 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIE 108 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEE
Confidence 3599999999999999999985 678999999
No 400
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0016 Score=70.30 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCC---e-EEEeeEEEEecCcCCCCCC
Q 008839 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKG---T-VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G---~-~i~~d~vi~a~G~~p~~~~ 347 (551)
+...++..++++.+++.+.+|..+++..+.|++ .++ + ...++.||+|.|...+..+
T Consensus 209 l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 209 LKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred chhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 344567778999999999999988876444444 333 2 2467899999999876665
No 401
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.64 E-value=0.0067 Score=62.68 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=31.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+|+|||+|..|+|+|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999977654
No 402
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.64 E-value=0.012 Score=64.77 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+..|..+++.|.+|+|||
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe 342 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFE 342 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 479999999999999999999999999999
No 403
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.0059 Score=63.35 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=66.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc------------------------------------------CCC-
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV------------------------------------------LRG- 283 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~------------------------------------------l~~- 283 (551)
.|+|||||-.|+|.|...+++|+++.+++....- |..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~s 85 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNSS 85 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccCC
Confidence 6999999999999999999999998888743210 000
Q ss_pred -----------CCH-HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecCc
Q 008839 284 -----------FDE-DIRDFVAEQMSL-RGIEFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 284 -----------~~~-~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.|. .+...+++.++. .++.++.+ .|.++..+++ .+..|.+.+|..+.|+.||++||.
T Consensus 86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 011 122224444443 36777655 6777666444 467899999999999999999985
No 404
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.59 E-value=0.005 Score=65.73 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|.+|+++|..|++.|++|+++|
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999999999999999
No 405
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.58 E-value=0.0026 Score=63.83 Aligned_cols=40 Identities=25% Similarity=0.497 Sum_probs=32.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCc--EEEEccCCCCCCCCCCCCCCCee
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGAS--VAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~--V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
..+|+|+|||.+||++|++|++.+.+ |+|+|+ ...+||..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea---------~~RvGGwi 52 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEA---------SPRVGGWI 52 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEec---------CCccccee
Confidence 46899999999999999999997765 566993 66677754
No 406
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.57 E-value=0.028 Score=59.72 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=66.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC--------------C-----------------CC---------
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR--------------G-----------------FD--------- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~--------------~-----------------~~--------- 285 (551)
..|+|||+|..|+-.|..+++.|.+|.++++.+..-. . .+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999887431100 0 00
Q ss_pred --------------------------------------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC
Q 008839 286 --------------------------------------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG 327 (551)
Q Consensus 286 --------------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G 327 (551)
..+.+.+.+.+++.|++++.+ .++++..+++.++.+.. ++
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence 112233445556678888765 67777654444344555 56
Q ss_pred eEEEeeEEEEecCcCCCC
Q 008839 328 TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 328 ~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.++.||+|||..+..
T Consensus 160 ~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 160 ELLKFDATVIATGGFSGL 177 (466)
T ss_pred EEEEeCeEEECCCcCcCC
Confidence 679999999999986643
No 407
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.33 E-value=0.0079 Score=61.32 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC----------CCCHH---HHHHHHHHHHhcCcEEEcCcccEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR----------GFDED---IRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~----------~~~~~---~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
.++++|||||..|++.|..|++.|.+|+++++.+.+.. ..|.. +...+.+.-..-+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 67999999999999999999999999999999886532 11111 112233444456899999999999
Q ss_pred EEEcCCceEEEEE
Q 008839 312 ILKSTDGSLSVKT 324 (551)
Q Consensus 312 i~~~~~~~~~V~~ 324 (551)
+.+.-++ .+|+.
T Consensus 204 v~G~vGn-F~vki 215 (622)
T COG1148 204 VSGSVGN-FTVKI 215 (622)
T ss_pred ecccccc-eEEEE
Confidence 9876554 55544
No 408
>PLN02985 squalene monooxygenase
Probab=96.26 E-value=0.027 Score=60.42 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=29.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 479999999999999999999999999999764
No 409
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.021 Score=58.20 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=28.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.|+|||||-.|+|.|.+.++.|.+.+++...
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 7999999999999999999999998888743
No 410
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.15 E-value=0.056 Score=59.63 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=70.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC-CCeEEEEeecCccCC--------------------------------C---CC----
Q 008839 246 EKIAIVGGGYIALEFAGIFSGL-TSEVHVFIRQKKVLR--------------------------------G---FD---- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~-g~~Vtlv~~~~~~l~--------------------------------~---~~---- 285 (551)
-.|+|||+|+.|+-+|..|++. |.+|.++++.+.... . ++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~~ 112 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDPA 112 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCCc
Confidence 4799999999999999999995 999999997653100 0 00
Q ss_pred ----------------------------HHHHHHHHHHHHhcC--cEEEcCcccEEEEEcCC--ceEEEEEC------CC
Q 008839 286 ----------------------------EDIRDFVAEQMSLRG--IEFHTEESPQAILKSTD--GSLSVKTN------KG 327 (551)
Q Consensus 286 ----------------------------~~~~~~l~~~l~~~G--v~i~~~~~v~~i~~~~~--~~~~V~~~------~G 327 (551)
..+.+.+.+.+.+.| +++..++++++++.+++ ..++|++. +|
T Consensus 113 ~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g 192 (634)
T PRK08294 113 DPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEG 192 (634)
T ss_pred cccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCC
Confidence 012233445555655 57788999999986542 23566664 35
Q ss_pred --eEEEeeEEEEecCcCCCC
Q 008839 328 --TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 328 --~~i~~d~vi~a~G~~p~~ 345 (551)
+++.+|+||-|=|.+...
T Consensus 193 ~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 193 EEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred ceEEEEeCEEEECCCCchHH
Confidence 579999999999986543
No 411
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.15 E-value=0.061 Score=58.76 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=36.7
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008839 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
.+.+++.||+++.++.++++..+++.+..|.. .+|+ .+.++.||+|+|...
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 33455668999999999998876554444432 4564 578999999999754
No 412
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.07 E-value=0.0049 Score=66.72 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-e---EEEeeEEEEecCcCCCCCC
Q 008839 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-T---VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-~---~i~~d~vi~a~G~~p~~~~ 347 (551)
.+...+++.|++|+.++.|.+|.-+++....|++.++ + .+.++.||+|.|..-...+
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHH
Confidence 3444445678999999999999877655556665432 2 3579999999997544444
No 413
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.98 E-value=0.07 Score=58.61 Aligned_cols=52 Identities=17% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHHHhcC-cEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCC
Q 008839 292 VAEQMSLRG-IEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 292 l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+.+++.| |+++.++.+.++..+++.+..|. ..+|+ .+.++.||+|+|-..
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 334455555 99999999999876555434443 34554 588999999999643
No 414
>PLN02785 Protein HOTHEAD
Probab=95.97 E-value=0.0069 Score=65.88 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=29.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..||+||||||.||+.+|.+|++ +.+|+|||
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE 84 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLE 84 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEe
Confidence 46999999999999999999999 68999999
No 415
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.94 E-value=0.037 Score=55.73 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=31.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|+|||..|+-.|..|++.|.+|.+++.+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5799999999999999999999999999997654
No 416
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.92 E-value=0.055 Score=55.23 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=63.6
Q ss_pred HHHHHHHHhCCCeEEEEeecCccCCC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-eEEEeeE
Q 008839 258 LEFAGIFSGLTSEVHVFIRQKKVLRG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-TVDGFSH 334 (551)
Q Consensus 258 ~e~a~~l~~~g~~Vtlv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-~~i~~d~ 334 (551)
-++-.+|.++|.... .++..+++|. -..++.+.+.+.+++.||+++++++|++|+ +++ ..+.+.++ ..+.+|.
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~~v~~~~~~~~~~a~~ 132 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-LRFETPDGQSTIEADA 132 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-EEEEECCCceEEecCE
Confidence 356677888887533 4455677764 456788999999999999999999999992 333 66776543 4699999
Q ss_pred EEEecCcCCCC
Q 008839 335 VMFATGRRPNT 345 (551)
Q Consensus 335 vi~a~G~~p~~ 345 (551)
||+|+|-.+..
T Consensus 133 vIlAtGG~s~p 143 (376)
T TIGR03862 133 VVLALGGASWS 143 (376)
T ss_pred EEEcCCCcccc
Confidence 99999986644
No 417
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.027 Score=55.09 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec--C---------cc---CCCCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ--K---------KV---LRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~--~---------~~---l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
+-.|+|||+|+.|...|-+.++.|.+.-++.-+ . .+ .....+++...+.+..++..|.+..-.+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 568999999999999999988887654333210 0 11 122578899999999999999999988888
Q ss_pred EEEEcC--CceEEEEECCCeEEEeeEEEEecCcC
Q 008839 311 AILKST--DGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 311 ~i~~~~--~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
++++.. ++...|++.+|-.+++..+|++||.+
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 888742 33588999999999999999999975
No 418
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.88 E-value=0.0039 Score=64.23 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=31.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008839 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
..+|||+|||||..|..+|.-++-+|++|.|+|+
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~ 98 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEA 98 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEec
Confidence 3469999999999999999999999999999993
No 419
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.84 E-value=0.086 Score=56.42 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=39.4
Q ss_pred HHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECC-C--eEEEeeEEEEecCcCCC
Q 008839 289 RDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNK-G--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 289 ~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G--~~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+++ .||+++.++.++++..+++.+..+...+ + ..+.++.||+|+|....
T Consensus 131 ~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 131 ITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 3345555565 5899999999999987655444454432 3 36889999999998664
No 420
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.81 E-value=0.012 Score=58.99 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCccEEEECCChHHHHHHHHHHh----CCCcEEEEc
Q 008839 71 YDFDLFTIGAGSGGVRASRFAAN----FGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~----~G~~V~liE 102 (551)
..|||||+||||.|++.|..|.. +.+||.|+|
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld 70 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLD 70 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEe
Confidence 36999999999999999999987 457999999
No 421
>PRK08275 putative oxidoreductase; Provisional
Probab=95.78 E-value=0.1 Score=56.79 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEE---ECCCe--EEEeeEEEEecCcCCC
Q 008839 287 DIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVK---TNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+.+++.||+++.++.++++..+ ++.+..+. ..+|+ .+.++.||+|||....
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 45566777778889999999999999876 33334443 34564 4789999999998653
No 422
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.72 E-value=0.018 Score=43.13 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=28.4
Q ss_pred EEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 250 ViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 7999999999999999999999999998865
No 423
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.61 E-value=0.11 Score=56.43 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++.||++++++.++++..++++ ++.+.. .+|+ .+.++.||+|||-..+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 345555666677789999999999998876554 454442 4564 5789999999997543
No 424
>PRK07804 L-aspartate oxidase; Provisional
Probab=95.58 E-value=0.13 Score=55.63 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEE-------CCC-eEEEeeEEEEecCc
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKT-------NKG-TVDGFSHVMFATGR 341 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~-------~~G-~~i~~d~vi~a~G~ 341 (551)
.+.+.+.+++.||+++.++.+.++..+++ .+..+.. .++ ..+.++.||+|+|.
T Consensus 147 ~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 147 QRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 34455556677889999999999877654 3344443 233 35889999999986
No 425
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.55 E-value=0.1 Score=55.31 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|..|+.+|..|++.|++|+++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d 35 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTD 35 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3679999999999999999999999999999
No 426
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.53 E-value=0.12 Score=56.44 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=37.6
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCC
Q 008839 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p 343 (551)
.+.+.+++.||+++.++.++++..+++.++.|... +|+ .+.++.||+|||-..
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 34445556789999999999988765555555542 343 578999999999543
No 427
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=0.18 Score=52.09 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=62.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC---CeEEEEeecCccC-------------------------CCCCHHHHHHHHHH--
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKKVL-------------------------RGFDEDIRDFVAEQ-- 295 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g---~~Vtlv~~~~~~l-------------------------~~~~~~~~~~l~~~-- 295 (551)
.+|+|||+|++|+.+|..|.+.- ..|++++..+.+. +..+.++.++|++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999987652 2388888766531 11122344443332
Q ss_pred --------------------------------HHhcC---cEEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEec
Q 008839 296 --------------------------------MSLRG---IEFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFAT 339 (551)
Q Consensus 296 --------------------------------l~~~G---v~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~ 339 (551)
+++.- +.++ .++.+.+..+++ +...+...+|....||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 11111 3333 334455555433 2356777899989999999999
Q ss_pred CcCCCCC
Q 008839 340 GRRPNTK 346 (551)
Q Consensus 340 G~~p~~~ 346 (551)
|..+...
T Consensus 161 gh~~~~~ 167 (474)
T COG4529 161 GHSAPPA 167 (474)
T ss_pred cCCCCCc
Confidence 9876654
No 428
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.36 E-value=0.016 Score=61.55 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.0
Q ss_pred CCCCccEEEECCChHHHHHHHHHHh-CCCcEEEEc
Q 008839 69 SHYDFDLFTIGAGSGGVRASRFAAN-FGASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE 102 (551)
....||.+|||||.||...|.+|++ ..++|+|+|
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLE 88 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLE 88 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEe
Confidence 4457999999999999999999999 568999999
No 429
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.34 E-value=0.046 Score=61.79 Aligned_cols=33 Identities=36% Similarity=0.516 Sum_probs=30.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCc
Q 008839 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~ 279 (551)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998765
No 430
>PTZ00367 squalene epoxidase; Provisional
Probab=95.22 E-value=0.1 Score=56.64 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=30.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
-+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999865
No 431
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.18 E-value=0.16 Score=55.80 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=32.0
Q ss_pred CcEEEcCcccEEEEEcCC-ceEEEEEC---CCe--EEEeeEEEEecCcCC
Q 008839 300 GIEFHTEESPQAILKSTD-GSLSVKTN---KGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~-~~~~V~~~---~G~--~i~~d~vi~a~G~~p 343 (551)
||+++.++.++++..+++ .++.|... +|+ .+.++.||+|||-..
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 788999999999876544 44555542 453 578999999998743
No 432
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.02 E-value=0.031 Score=57.99 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCC
Q 008839 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
.++.+.+-+...=.|..++++..|.+|..++++ ...|. .+|+++.|+.||....+-|
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~dpsy~p 289 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGDPSYLP 289 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEEGGGBG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEECCccCc
Confidence 378888888888899999999999999886555 34455 4888999999998777666
No 433
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.01 E-value=0.067 Score=54.18 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=58.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCcc-------CC----------C----CC-------------------
Q 008839 247 KIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKV-------LR----------G----FD------------------- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~-------l~----------~----~~------------------- 285 (551)
.++.||.|+.++-+|..+.+.+ .++.++++.+.+ ++ . -+
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4789999999999999998886 788899977643 00 0 00
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc---eEEEEEC----CCeEEEeeEEEEecCcCCCCC
Q 008839 286 -----------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG---SLSVKTN----KGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 286 -----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~---~~~V~~~----~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.++.+.++...++.+-.+.++++|++|+...+. ...|.+. +++++.|+.||+++|..|...
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 011222333334445448889999999876543 3667762 346899999999999988764
No 434
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.01 E-value=0.11 Score=45.71 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=51.9
Q ss_pred EEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC
Q 008839 248 IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG 327 (551)
Q Consensus 248 vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G 327 (551)
|+|+|+|.+|.-+|..|++.|.+|+++.|.. ..+.+++.|+.+.... .+.... ......+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-------------~~~~~~~~g~~~~~~~--~~~~~~----~~~~~~~~ 61 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-------------RLEAIKEQGLTITGPD--GDETVQ----PPIVISAP 61 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-------------HHHHHHHHCEEEEETT--EEEEEE----EEEEESSH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-------------cHHhhhheeEEEEecc--cceecc----cccccCcc
Confidence 6899999999999999999999999999843 2344788899988774 111100 11222221
Q ss_pred --eEEEeeEEEEecCcCC
Q 008839 328 --TVDGFSHVMFATGRRP 343 (551)
Q Consensus 328 --~~i~~d~vi~a~G~~p 343 (551)
..-.+|.||+|+-...
T Consensus 62 ~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 62 SADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp GHHHSTESEEEE-SSGGG
T ss_pred hhccCCCcEEEEEecccc
Confidence 2346899999875544
No 435
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.91 E-value=0.037 Score=56.13 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 58999999999999999999999999999987654
No 436
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.87 E-value=0.18 Score=49.63 Aligned_cols=70 Identities=20% Similarity=0.409 Sum_probs=44.8
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeE--EEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008839 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV--DGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~--i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
+++.|.+.+|+++.+.. ++. +++.+.|+..||++ +.+..+++|+|.+|.... +....+.+|.+|+....+
T Consensus 116 Y~~~L~k~~V~~i~G~a--~f~--~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn--IpG~E~gidSDgff~Lee 187 (478)
T KOG0405|consen 116 YKRNLAKAAVKLIEGRA--RFV--SPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPN--IPGAELGIDSDGFFDLEE 187 (478)
T ss_pred HHhhccccceeEEeeeE--EEc--CCCceEEEecCCeeEEEecceEEEEeCCccCCCC--CCchhhccccccccchhh
Confidence 45566677788777621 222 22237788888863 578999999999998775 334444455666554443
No 437
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.80 E-value=0.029 Score=54.54 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|-|||||.||..||++++++|.+|.|+|
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~E 33 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYE 33 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEE
Confidence 458999999999999999999999999999
No 438
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.66 E-value=0.089 Score=53.10 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.++++|++++.+++|+++..+++....|.+.+| ++.+|.||+|+|....
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 5677888889999999999999999999886665455777777 6999999999997654
No 439
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.65 E-value=0.034 Score=55.67 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=45.1
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCee
Q 008839 297 SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVK 356 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~ 356 (551)
...||-+..+-.|.+|...++. |.++||.+|.+|..++|||.+|..... ++.++-+
T Consensus 268 ~nGGvAvl~G~kvvkid~~d~~---V~LnDG~~I~YdkcLIATG~~Pk~l~~-~~~A~~e 323 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEEDKK---VILNDGTTIGYDKCLIATGVRPKKLQV-FEEASEE 323 (659)
T ss_pred ccCceEEEeccceEEeecccCe---EEecCCcEeehhheeeecCcCcccchh-hhhcCHH
Confidence 4568999999999999887754 899999999999999999999976533 4444433
No 440
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=94.61 E-value=0.33 Score=53.86 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008839 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+++.||+++.++.+.++..+++.+..+.. .+|+ .+.++.||+|||-..
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4456678999999999999876554444443 4565 467999999999543
No 441
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.58 E-value=0.38 Score=52.60 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHh-cCcEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCC
Q 008839 292 VAEQMSL-RGIEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 292 l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+.+++ .||+++.++.+.++..+++.++.+. ..+|+ .+.++.||+|||-..
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 3444444 5888888888888876554433433 34664 578999999999864
No 442
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=94.56 E-value=0.36 Score=46.41 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=29.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC------CeEEEEeecC
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLT------SEVHVFIRQK 278 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g------~~Vtlv~~~~ 278 (551)
.++++|+|||.+|+-.|++|.+.+ ..||+++.+.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 479999999999999999999886 6788888543
No 443
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.49 E-value=0.13 Score=54.33 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=57.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~ 324 (551)
.++++|+|+|.+|+.+|..|.+.|++|+++++... +.+ +...+.+.+.|++++.+....+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~------------- 64 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEE------------- 64 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchh-------------
Confidence 58999999999999999999999999999987541 122 2233446677888765533220
Q ss_pred CCCeEEEeeEEEEecCcCCCCCC
Q 008839 325 NKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 325 ~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
..-.+|.||.++|..++...
T Consensus 65 ---~~~~~d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 65 ---FLEGVDLVVVSPGVPLDSPP 84 (450)
T ss_pred ---HhhcCCEEEECCCCCCCCHH
Confidence 01247999999998877653
No 444
>PLN02815 L-aspartate oxidase
Probab=94.43 E-value=0.44 Score=52.10 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcC-Cc---eEEEEE---CCCe--EEEeeEEEEecCcC
Q 008839 288 IRDFVAEQMSLR-GIEFHTEESPQAILKST-DG---SLSVKT---NKGT--VDGFSHVMFATGRR 342 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~-~~---~~~V~~---~~G~--~i~~d~vi~a~G~~ 342 (551)
+...+.+.+++. ||+++.++.+.++..++ ++ ++.+.. .+|+ .+.++.||+|||-.
T Consensus 157 i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 157 IERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred HHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 333444445444 89999999999987643 22 345543 3564 46899999999943
No 445
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.34 E-value=0.072 Score=55.41 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=40.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv 301 (551)
++|+|||+|..|+-+|..|++.|.+|+++++.+.+... ..-.+.....+.|++.|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl 59 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGV 59 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCC
Confidence 68999999999999999999999999999998754321 111222334455555554
No 446
>PRK05868 hypothetical protein; Validated
Probab=94.33 E-value=0.061 Score=55.34 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=32.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
++|+|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~ 37 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR 37 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence 479999999999999999999999999999987643
No 447
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.26 E-value=0.11 Score=48.44 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
+++++|||||.+|..-+..|.+.|++|+++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 579999999999999999999999999999753
No 448
>PRK08071 L-aspartate oxidase; Provisional
Probab=94.21 E-value=0.28 Score=52.73 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC--CCe--EEEeeEEEEecCcCCC
Q 008839 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN--KGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G~--~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.++ .||+++.++.++++..+++.+..+... +|+ .+.++.||+|+|....
T Consensus 133 ~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 133 LEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 333444443 478888888888887655444445443 343 5789999999998654
No 449
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.19 E-value=0.066 Score=55.20 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=32.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
++|+|||||..|+++|..|++.|.+|++++..+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976554
No 450
>PRK06184 hypothetical protein; Provisional
Probab=94.12 E-value=0.079 Score=56.96 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~ 39 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPF 39 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 369999999999999999999999999999987653
No 451
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.11 E-value=0.069 Score=55.29 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=44.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec-CccCCC-CCHHHHHHHHHHHHhcCc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ-KKVLRG-FDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~-~~~l~~-~~~~~~~~l~~~l~~~Gv 301 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++. ..+.+. -.-.+...-.+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 47999999999999999999999999999998 333332 233445566778888887
No 452
>PRK06847 hypothetical protein; Provisional
Probab=94.10 E-value=0.093 Score=53.99 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 468999999999999999999999999999987653
No 453
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.05 E-value=0.084 Score=54.78 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=33.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 468999999999999999999999999999998764
No 454
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.94 E-value=0.067 Score=47.64 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||||..|.++|..|++.|++|.|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~ 29 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWG 29 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEe
Confidence 48999999999999999999999999998
No 455
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=93.93 E-value=0.11 Score=53.68 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++ |++++.++.|.+++.++++ +.|++.+|+.+.+|.||+|+|....
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 45677888888888 9999999999999876655 7788888887999999999998654
No 456
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=93.91 E-value=0.099 Score=48.18 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=97.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CC-------------------------------HH
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FD-------------------------------ED 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~-------------------------------~~ 287 (551)
-.|+|+|+|++|+-+|.+|++.|.+|.+++++-.+-.+ |+ .+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 46999999999999999999999999999987654211 11 11
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEEC-----------CCeEEEeeEEEEecCcCCCCCCCCcc---c
Q 008839 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTN-----------KGTVDGFSHVMFATGRRPNTKNLGLE---K 352 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~-----------~G~~i~~d~vi~a~G~~p~~~~l~l~---~ 352 (551)
+...+....-+.|.+++..+.|+++.-.++ ++..|.++ |--.++++.||-|||.....-.+-.+ .
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~ 190 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPE 190 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhccc
Confidence 111233333467899999999999877666 44444432 22368999999999986643211011 1
Q ss_pred cCeeecCCCCeEeC--C-----CCCCCCCcEEEeCcCCCC----C---CChHHHHHhHHHHHHHHc
Q 008839 353 VGVKMTKNGAIEVD--E-----YSGTAVPSIWAVGDVTDR----I---NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 353 ~gl~~~~~G~i~vd--~-----~~~t~~~~vya~GD~~~~----~---~~~~~A~~~g~~aa~~i~ 404 (551)
.++++...+..+.+ | +-+--+||+|++|=+++. | +..-.=..+|+.+|+.++
T Consensus 191 l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~ 256 (262)
T COG1635 191 LGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEIL 256 (262)
T ss_pred cccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHH
Confidence 12222222223322 1 222357999999987762 1 111122466777777665
No 457
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.86 E-value=0.047 Score=52.88 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=62.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh-CCC-eEEEEeecCccC--CCC---CHHHHHH-----HHHHHHhcCcEEEcCcccEEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSG-LTS-EVHVFIRQKKVL--RGF---DEDIRDF-----VAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~-~g~-~Vtlv~~~~~~l--~~~---~~~~~~~-----l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.-+|+|+|||.-|+.+|..+.+ ++. +|-+++..+.-. |.+ ...+... -+..+--.|.+.+ ...|+++
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi-~ekv~~f 117 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWI-KEKVKEF 117 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHH-HHHHHhc
Confidence 4579999999999999987765 454 677777654321 111 1111110 0001111122222 2467788
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008839 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+++++. |.+.+|++|.+|.+|+|+|..-+-+.
T Consensus 118 ~P~~N~---v~t~gg~eIsYdylviA~Giql~y~~ 149 (446)
T KOG3851|consen 118 NPDKNT---VVTRGGEEISYDYLVIAMGIQLDYGK 149 (446)
T ss_pred CCCcCe---EEccCCcEEeeeeEeeeeeceeccch
Confidence 777655 88999999999999999999876654
No 458
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.83 E-value=0.087 Score=49.70 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=59.4
Q ss_pred EEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE----------EE--cCcccEEEE
Q 008839 248 IAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE----------FH--TEESPQAIL 313 (551)
Q Consensus 248 vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~----------i~--~~~~v~~i~ 313 (551)
.+|+|||..|+.+|..|+.+ ..+|.++..++-+-.- .--+.+.+++++-.|+ +. .+ .|..+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~~~ 77 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVTWD 77 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhhhc
Confidence 57999999999999999876 4578787776532110 1112233444433332 21 11 134443
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008839 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
..+ -.+.+.+|+.+.++.+.+|+|.+|...
T Consensus 78 s~e---hci~t~~g~~~ky~kKOG~tg~kPklq 107 (334)
T KOG2755|consen 78 SSE---HCIHTQNGEKLKYFKLCLCTGYKPKLQ 107 (334)
T ss_pred ccc---ceEEecCCceeeEEEEEEecCCCccee
Confidence 333 448899999999999999999999654
No 459
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.83 E-value=0.41 Score=51.99 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcC--CceEEEEE-CCCe--EEEeeEEEEecCcC
Q 008839 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKST--DGSLSVKT-NKGT--VDGFSHVMFATGRR 342 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~--~~~~~V~~-~~G~--~i~~d~vi~a~G~~ 342 (551)
.+...+.+.+++ .||+++.++.+.++..++ +.++.|.. .+|+ .+.++.||+|||-.
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 344445555554 489999999999987653 33444433 3554 37899999999974
No 460
>PRK08244 hypothetical protein; Provisional
Probab=93.81 E-value=0.095 Score=56.21 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=32.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36999999999999999999999999999998754
No 461
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.66 E-value=0.15 Score=53.29 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=32.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 357999999999999999999999999999998754
No 462
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.65 E-value=0.34 Score=46.79 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008839 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+...+.+.|.++|+++... +|.+++.-. .-++|.|+.|+|.....
T Consensus 150 ~~~ylpyl~k~l~e~Gvef~~r-~v~~l~E~~------------~~~~DVivNCtGL~a~~ 197 (342)
T KOG3923|consen 150 GPKYLPYLKKRLTENGVEFVQR-RVESLEEVA------------RPEYDVIVNCTGLGAGK 197 (342)
T ss_pred chhhhHHHHHHHHhcCcEEEEe-eeccHHHhc------------cCCCcEEEECCcccccc
Confidence 4456778999999999999765 565553211 14589999999987654
No 463
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=93.42 E-value=0.6 Score=45.93 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=23.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC----CCeEEEEeecCc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGL----TSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~----g~~Vtlv~~~~~ 279 (551)
..|+|||||.+|...|..|+++ |.+|.++++.+.
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 3577788887777777777654 567777776553
No 464
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.32 E-value=0.16 Score=52.47 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 47999999999999999999999999999997653
No 465
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=93.32 E-value=0.16 Score=50.73 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=29.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|||+|..|..+|..|.+.|.+|++++|.-
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 58999999999999999999999999999863
No 466
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=93.31 E-value=0.94 Score=49.50 Aligned_cols=52 Identities=15% Similarity=-0.001 Sum_probs=35.6
Q ss_pred HHHHHHh-cCcEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCC
Q 008839 292 VAEQMSL-RGIEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 292 l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+.+.+ .||+++.++.+.++..+++.+..+. ..+|+ .+.++.||+|+|...
T Consensus 138 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 138 LFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 3444444 4788888888888887655444443 34663 578999999999754
No 467
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.28 E-value=0.28 Score=45.62 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~ 324 (551)
+++++|||+|.+|...+..|.+.|.+|+++.+.. .+.+.+...+..+.+... .+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~----------~~~l~~l~~~~~i~~~~~----------------~~ 63 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL----------TENLVKLVEEGKIRWKQK----------------EF 63 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC----------CHHHHHHHhCCCEEEEec----------------CC
Q ss_pred CCCeEEEeeEEEEecC
Q 008839 325 NKGTVDGFSHVMFATG 340 (551)
Q Consensus 325 ~~G~~i~~d~vi~a~G 340 (551)
.....-.+|.||.||+
T Consensus 64 ~~~~l~~adlViaaT~ 79 (202)
T PRK06718 64 EPSDIVDAFLVIAATN 79 (202)
T ss_pred ChhhcCCceEEEEcCC
No 468
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.23 E-value=0.79 Score=50.17 Aligned_cols=53 Identities=19% Similarity=0.085 Sum_probs=35.6
Q ss_pred HHHHHHh-cCcEEEcCcccEEEEEcCCceEEE---EECCCe--EEEeeEEEEecCcCCC
Q 008839 292 VAEQMSL-RGIEFHTEESPQAILKSTDGSLSV---KTNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 292 l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V---~~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
+.+.+.+ .+|+++.++.++++..+++.+..+ ...+|+ .+.++.||+|+|....
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 3333334 378888888888888765543333 335664 6789999999997553
No 469
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.22 E-value=0.91 Score=49.75 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
..|+|||+|..|+-.|..+++.|.+|.+++..
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 36999999999999999999999999999843
No 470
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=93.14 E-value=0.79 Score=49.37 Aligned_cols=47 Identities=9% Similarity=0.072 Sum_probs=32.0
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEee-EEEEecCcCCCC
Q 008839 299 RGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFS-HVMFATGRRPNT 345 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d-~vi~a~G~~p~~ 345 (551)
.|++++++++++++..+++.++.|.. .+|+ .+.++ .||+|+|-..+.
T Consensus 187 ~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 187 PNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred CCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCccCC
Confidence 38899999999998776554444543 3343 47786 699999876543
No 471
>PRK07538 hypothetical protein; Provisional
Probab=93.13 E-value=0.14 Score=53.51 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=32.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 36 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR 36 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 68999999999999999999999999999987543
No 472
>PRK06126 hypothetical protein; Provisional
Probab=93.13 E-value=0.14 Score=55.59 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~ 42 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT 42 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 357999999999999999999999999999988653
No 473
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.89 E-value=0.13 Score=46.85 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=26.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||+|..|...|..++..|++|+++|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Confidence 48999999999999999999999999999
No 474
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.89 E-value=0.12 Score=47.43 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=25.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||.|..|+..|..+++.|++|+-+|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEe
Confidence 369999999999999999999999999999
No 475
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.89 E-value=0.3 Score=48.66 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=52.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK 326 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~ 326 (551)
++.|+|+|.+|.-++..|.+.|.+|+++.|.++ .+.+++.|..+..... .. .. ......+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-------------~~~l~~~GL~i~~~~~--~~----~~-~~~~~~~ 61 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-------------LEALKKKGLRIEDEGG--NF----TT-PVVAATD 61 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-------------HHHHHhCCeEEecCCC--cc----cc-ccccccC
Confidence 689999999999999999999988999888542 3456677888876644 00 00 1111111
Q ss_pred -CeEEEeeEEEEecCcC
Q 008839 327 -GTVDGFSHVMFATGRR 342 (551)
Q Consensus 327 -G~~i~~d~vi~a~G~~ 342 (551)
...-++|.||+++-..
T Consensus 62 ~~~~~~~Dlviv~vKa~ 78 (307)
T COG1893 62 AEALGPADLVIVTVKAY 78 (307)
T ss_pred hhhcCCCCEEEEEeccc
Confidence 1234799999987553
No 476
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.85 E-value=0.14 Score=54.56 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..++|+|||+|..|+-+|..|.++|.+|++++.++++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3568999999999999999999999999999988875
No 477
>PRK09126 hypothetical protein; Provisional
Probab=92.80 E-value=0.24 Score=51.22 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=42.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---CC-CCH--HHHHHHHHHHHhcCc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---RG-FDE--DIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---~~-~~~--~~~~~l~~~l~~~Gv 301 (551)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+..- +. ... .+.....+.|++.|+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl 65 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA 65 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC
Confidence 369999999999999999999999999999987531 11 111 234455677777776
No 478
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=92.75 E-value=0.19 Score=51.76 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCcc
Q 008839 247 KIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|.+.| .+|+++++.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 3899999999999999999999 999999998654
No 479
>PRK06185 hypothetical protein; Provisional
Probab=92.71 E-value=0.18 Score=52.45 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=40.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv 301 (551)
.+|+|||+|++|+-+|..|++.|.+|+++++.+..... ....+...-.+.|++.|+
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~ 63 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGL 63 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCC
Confidence 47999999999999999999999999999987643221 111223334455666565
No 480
>PRK07045 putative monooxygenase; Reviewed
Probab=92.71 E-value=0.19 Score=51.95 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=32.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 47999999999999999999999999999998865
No 481
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.70 E-value=0.21 Score=46.96 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008839 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
..++|+|||||.+|..=+..|.+.|++|+++...
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3679999999999999999999999999999753
No 482
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=92.65 E-value=0.45 Score=49.33 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=27.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|||+|..|+-+|..|.+. .+|+++.+.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~ 39 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGP 39 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCC
Confidence 689999999999999999887 8899998765
No 483
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.51 E-value=0.6 Score=46.55 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=30.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.++.|+|+|.+|.-+|..|.+.|.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999999985
No 484
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.43 E-value=0.16 Score=48.17 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+++|||+|..|.+.|..|.+.|++|++||
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id 30 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLID 30 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEE
Confidence 69999999999999999999999999999
No 485
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.39 E-value=0.12 Score=42.41 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||||..|..-+..|.+.|.+|+++.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis 37 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVIS 37 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence 4679999999999999999999999999998
No 486
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.35 E-value=0.3 Score=50.88 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=30.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999876
No 487
>PRK07588 hypothetical protein; Provisional
Probab=92.34 E-value=0.17 Score=52.41 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=31.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 6899999999999999999999999999988754
No 488
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.30 E-value=0.13 Score=53.66 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008839 82 SGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 82 ~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
+|||+||++|++.|++|+|+|+ .+.+||.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa---------~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEA---------SDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEES---------SSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEc---------CCCCCcce
No 489
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.15 E-value=0.16 Score=46.34 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=29.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
+|.|||+|..|..+|..+...|.+|+++++.+.-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l 35 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEAL 35 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence 58999999999999999999999999999876533
No 490
>PRK09077 L-aspartate oxidase; Provisional
Probab=92.06 E-value=1.6 Score=47.40 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcC------CceEEEEE---CCCe--EEEeeEEEEecCcCCCC
Q 008839 288 IRDFVAEQMSLR-GIEFHTEESPQAILKST------DGSLSVKT---NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~------~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
+...+.+.+++. ||+++.++.+.++..++ +.++.|.. .+|+ .+.++.||+|+|.....
T Consensus 140 i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 140 VQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred HHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 444455555444 89999999888877543 34445543 2454 57899999999986643
No 491
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.00 E-value=0.22 Score=46.41 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||..|...+..|.+.|.+|+|++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 479999999999999999999999999998
No 492
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.98 E-value=0.21 Score=45.02 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=27.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|+|+|.+|..|+..|...|.+|+++|
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d 50 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPD 50 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence 579999999999999999999999999999
No 493
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.96 E-value=0.13 Score=49.73 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.-+|+|||||.+|..+|..+...|.+|+++|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild 198 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILD 198 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEe
Confidence 3589999999999999999999999999999
No 494
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.91 E-value=0.17 Score=53.79 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|+|||.|++|+++|..|++.|++|+++|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 48999999999999999999999999999
No 495
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.90 E-value=0.24 Score=43.97 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=29.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008839 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||||..|..-+..|.+.|.+|+||+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3579999999999999999999999999997
No 496
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=91.86 E-value=0.21 Score=52.75 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCcc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~ 280 (551)
++|+|||+|..|+-+|..|++.| .+|++++.++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL 37 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 47999999999999999999987 899999987754
No 497
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=91.85 E-value=0.45 Score=46.14 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=43.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CCH-HHHHHHHHHHHhcCcEEE
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FDE-DIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~~-~~~~~l~~~l~~~Gv~i~ 304 (551)
-.|+|||+|+.|+-+|..+++.|.+|.++++...+... ++. .+.....+.|++.|+.+.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 47999999999999999999999999999987654221 111 223345567777887754
No 498
>PRK08013 oxidoreductase; Provisional
Probab=91.83 E-value=0.29 Score=50.85 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 3699999999999999999999999999999875
No 499
>PRK07190 hypothetical protein; Provisional
Probab=91.82 E-value=0.26 Score=52.64 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=32.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 47999999999999999999999999999998754
No 500
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=91.81 E-value=0.28 Score=50.51 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008839 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 3899999999999999999999999999998753
Done!