BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008840
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 207/544 (38%), Positives = 275/544 (50%), Gaps = 66/544 (12%)
Query: 36 LKLEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVF 87
+ LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 1 MTLEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEEXTHQLHRDLPPTRLW 49
Query: 88 AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK-GVPTVV 146
+ PGPTIE + YV W N+LP H LPID TI + +++ V TVV
Sbjct: 50 GY-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104
Query: 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNL 206
HLHGG+ +SDGY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+
Sbjct: 105 HLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 207 LAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHP 263
AGL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 165 YAGLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 264 QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAY 323
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGL 282
Query: 324 LGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVN-DANGKVMKFI 382
L + V N LAPAE D++IDF+ + ILAN A G VN + + +M+F
Sbjct: 283 LPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSA----GCGGDVNPETDANIMQFR 338
Query: 383 ILKN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDPV 441
+ K + D R P+ L YPS R + + G+P LL+N K DPV
Sbjct: 339 VTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPV 397
Query: 442 TETPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV-- 485
TETPK + TE+ ++L F+ + D + S AV
Sbjct: 398 TETPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPP 456
Query: 486 PVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMR 545
P E+GWK+ + G V RI F P+ YV+HCHIL+HED MMR
Sbjct: 457 PPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMMR 504
Query: 546 PLKL 549
P+ +
Sbjct: 505 PMDI 508
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 312 bits (799), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 207/544 (38%), Positives = 275/544 (50%), Gaps = 66/544 (12%)
Query: 36 LKLEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVF 87
+ LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 1 MTLEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEECTHQLHRDLPPTRLW 49
Query: 88 AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK-GVPTVV 146
+ PGPTIE + YV W N+LP H LPID TI + +++ V TVV
Sbjct: 50 GY-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104
Query: 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNL 206
HLHGG+ +SDGY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+
Sbjct: 105 HLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 207 LAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHP 263
AGL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 165 YAGLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 264 QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAY 323
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGL 282
Query: 324 LGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVN-DANGKVMKFI 382
L + V N LAPAE D++IDF+ + ILAN A G VN + + +M+F
Sbjct: 283 LPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSA----GCGGDVNPETDANIMQFR 338
Query: 383 ILKN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDPV 441
+ K + D R P+ L YPS R + + G+P LL+N K DPV
Sbjct: 339 VTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPV 397
Query: 442 TETPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV-- 485
TETPK + TE+ ++L F+ + D + S AV
Sbjct: 398 TETPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPP 456
Query: 486 PVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMR 545
P E+GWK+ + G V RI F P+ YV+HCHIL+HED MMR
Sbjct: 457 PPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMMR 504
Query: 546 PLKL 549
P+ +
Sbjct: 505 PMDI 508
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 276/545 (50%), Gaps = 68/545 (12%)
Query: 36 LKLEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVF 87
+ LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 1 MTLEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEEXTHQLHRDLPPTRLW 49
Query: 88 AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK-GVPTVV 146
+ PGPTIE + YV W N+LP H LPID TI + +++ V TVV
Sbjct: 50 GY-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104
Query: 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNL 206
HLHGG+ +S+GY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+
Sbjct: 105 HLHGGVTPDDSEGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 207 LAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHP 263
AGL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 165 YAGLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 264 QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAY 323
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGL 282
Query: 324 LGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAG--NPVNDANGKVMKF 381
L + V N LAPAE D++IDF+ + ILAN A G NP DAN +M+F
Sbjct: 283 LPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDAN--IMQF 337
Query: 382 IILKN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDP 440
+ K + D R P+ L YPS R + + G+P LL+N K DP
Sbjct: 338 RVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDP 396
Query: 441 VTETPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV- 485
VTETPK + TE+ ++L F+ + D + S AV
Sbjct: 397 VTETPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVP 455
Query: 486 -PVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMM 544
P E+GWK+ + G V RI F P+ YV+HCHIL+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMM 503
Query: 545 RPLKL 549
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 310 bits (795), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 206/544 (37%), Positives = 275/544 (50%), Gaps = 66/544 (12%)
Query: 36 LKLEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVF 87
+ LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 1 MTLEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEECTHQLHRDLPPTRLW 49
Query: 88 AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK-GVPTVV 146
+ PGPTIE + YV W N+LP H LPID TI + +++ V TVV
Sbjct: 50 GY-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104
Query: 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNL 206
HLHGG+ +SDGY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+
Sbjct: 105 HLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 207 LAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHP 263
AGL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 165 YAGLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 264 QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAY 323
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGL 282
Query: 324 LGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVN-DANGKVMKFI 382
L + V N LAPAE D++IDF+ + ILAN A G VN + + +M+F
Sbjct: 283 LPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSA----GCGGDVNPETDANIMQFR 338
Query: 383 ILKN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDPV 441
+ K + D R P+ L YPS R + + G+P LL+N K DPV
Sbjct: 339 VTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPV 397
Query: 442 TETPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV-- 485
TETPK + TE+ ++L F+ + D + S AV
Sbjct: 398 TETPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPP 456
Query: 486 PVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMR 545
P E+GWK+ + G V RI F P+ YV+HCHIL+H+D MMR
Sbjct: 457 PPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHDDYDMMR 504
Query: 546 PLKL 549
P+ +
Sbjct: 505 PMDI 508
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 310 bits (795), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 275/545 (50%), Gaps = 68/545 (12%)
Query: 36 LKLEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVF 87
+ LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 1 MTLEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEEXTHQLHRDLPPTRLW 49
Query: 88 AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK-GVPTVV 146
+ PGPTIE + YV W N+LP H LPID TI + +++ V TVV
Sbjct: 50 GY-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104
Query: 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNL 206
HLHGG+ +SDGY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+
Sbjct: 105 HLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 207 LAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHP 263
AGL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 165 YAGLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 264 QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAY 323
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGL 282
Query: 324 LGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAG--NPVNDANGKVMKF 381
L + V N LAPAE D++IDF+ + ILAN A G NP DAN +M+F
Sbjct: 283 LPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDAN--IMQF 337
Query: 382 IILKN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDP 440
+ K + D R P+ L YPS R + + G+P LL+N K DP
Sbjct: 338 RVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDP 396
Query: 441 VTETPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV- 485
VTETPK + TE+ ++L F+ + D + S AV
Sbjct: 397 VTETPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVP 455
Query: 486 -PVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMM 544
P E+GWK+ + G V RI F P+ YV+HCH L+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHALEHEDYDMM 503
Query: 545 RPLKL 549
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 206/544 (37%), Positives = 275/544 (50%), Gaps = 66/544 (12%)
Query: 36 LKLEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVF 87
+ LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 1 MTLEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEECTHQLHRDLPPTRLW 49
Query: 88 AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK-GVPTVV 146
+ PGPTIE + YV W N+LP H LPID TI + +++ V TVV
Sbjct: 50 GY-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104
Query: 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNL 206
HLHGG+ +S+GY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+
Sbjct: 105 HLHGGVTPDDSNGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 207 LAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHP 263
AGL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 165 YAGLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 264 QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAY 323
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGL 282
Query: 324 LGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVN-DANGKVMKFI 382
L + V N LAPAE D++IDF+ + ILAN A G VN + + +M+F
Sbjct: 283 LPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSA----GCGGDVNPETDANIMQFR 338
Query: 383 ILKN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDPV 441
+ K + D R P+ L YPS R + + G+P LL+N K DPV
Sbjct: 339 VTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPV 397
Query: 442 TETPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV-- 485
TETPK + TE+ ++L F+ + D + S AV
Sbjct: 398 TETPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPP 456
Query: 486 PVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMR 545
P E+GWK+ + G V RI F P+ YV+HCHIL+HED MMR
Sbjct: 457 PPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMMR 504
Query: 546 PLKL 549
P+ +
Sbjct: 505 PMDI 508
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 206/544 (37%), Positives = 274/544 (50%), Gaps = 66/544 (12%)
Query: 36 LKLEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVF 87
+ LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 1 MTLEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEEXTHQLHRDLPPTRLW 49
Query: 88 AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK-GVPTVV 146
+ PGPTIE + YV W N+LP H LPID TI + +++ V TVV
Sbjct: 50 GY-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104
Query: 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNL 206
HLHGG+ +SDGY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+
Sbjct: 105 HLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 207 LAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHP 263
AGL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 165 YAGLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 264 QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAY 323
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGL 282
Query: 324 LGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVN-DANGKVMKFI 382
L + V N LAPAE D++IDF+ + ILAN A G VN + + +M+F
Sbjct: 283 LPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSA----GCGGDVNPETDANIMQFR 338
Query: 383 ILKN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDPV 441
+ K + D R P+ L YPS R + + G+P LL+N K DPV
Sbjct: 339 VTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPV 397
Query: 442 TETPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV-- 485
TETPK + TE+ ++L F+ + D + S AV
Sbjct: 398 TETPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPP 456
Query: 486 PVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMR 545
P E+GWK+ + G V RI F P+ YV+HCHIL+H D MMR
Sbjct: 457 PPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHTDYDMMR 504
Query: 546 PLKL 549
P+ +
Sbjct: 505 PMDI 508
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 275/545 (50%), Gaps = 68/545 (12%)
Query: 36 LKLEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVF 87
+ LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 1 MTLEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEECTHQLHRDLPPTRLW 49
Query: 88 AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK-GVPTVV 146
+ PGPTIE + YV W N+LP H LPID TI + +++ V TVV
Sbjct: 50 GY-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104
Query: 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNL 206
HLHGG+ +S GY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+
Sbjct: 105 HLHGGVTPDDSAGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNV 164
Query: 207 LAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHP 263
AGL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 165 YAGLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 264 QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAY 323
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGL 282
Query: 324 LGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAG--NPVNDANGKVMKF 381
L + V N LAPAE D++IDF+ + ILAN A G NP DAN +M+F
Sbjct: 283 LPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDAN--IMQF 337
Query: 382 IILKN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDP 440
+ K + D R P+ L YPS R + + G+P LL+N K DP
Sbjct: 338 RVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDP 396
Query: 441 VTETPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV- 485
VTETPK + TE+ ++L F+ + D + S AV
Sbjct: 397 VTETPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVP 455
Query: 486 -PVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMM 544
P E+GWK+ + G V RI F P+ YV+HCHIL+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMM 503
Query: 545 RPLKL 549
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 305 bits (782), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 207/542 (38%), Positives = 271/542 (50%), Gaps = 69/542 (12%)
Query: 38 LEMFVDELP--------DMPKIKGYYAANGVVKPKKLEIGMFEK-KWKFHRDLPPTPVFA 88
LE FVD LP K K YY E+ M E + HRDLPPT ++
Sbjct: 2 LEKFVDALPIPDTLKPVQQSKEKTYY-----------EVTMEEXCTHQLHRDLPPTRLWG 50
Query: 89 FGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHL 148
+ PGPTIE + YV W N+LP H LPID TI S + V TVVHL
Sbjct: 51 Y-----NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTI---HHSEEPEVKTVVHL 102
Query: 149 HGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLA 208
HGG+ +SDGY ++WF+ FE+ GP + E YHY N Q+ WYHDH M LTR+N+ A
Sbjct: 103 HGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYA 162
Query: 209 GLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPS---IHPQW 265
GL+GAYI+ P E L+LPS D +D PL + DR +GS++ S NPS +P
Sbjct: 163 GLVGAYIIHDPK-EKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSI 220
Query: 266 QPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAYLG 325
P + G+ I+VNGK WP + V RKYRFR+INASN NG FI +GSD L
Sbjct: 221 VPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLP 280
Query: 326 KPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVN-DANGKVMKFIIL 384
+ V N LAPAE D++IDF+ + ILAN A G VN + + +M+F +
Sbjct: 281 RSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSA----GCGGDVNPETDANIMQFRVT 336
Query: 385 KN-RETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDPVTE 443
K + D R P+ L YPS R + + G+P LL+N K DPVTE
Sbjct: 337 KPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTE 395
Query: 444 TPKTLDQTEL--------------VNLEEFKACMNKINDAIKCNLSKHACGKKQAV--PV 487
TPK + TE+ ++L F+ + D + S AV P
Sbjct: 396 TPK-VGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPP 454
Query: 488 HEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMRPL 547
E+GWK+ + G V RI F P+ YV+HCHIL+H D MMRP+
Sbjct: 455 SEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHLDYDMMRPM 502
Query: 548 KL 549
+
Sbjct: 503 DI 504
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 153/588 (26%), Positives = 229/588 (38%), Gaps = 131/588 (22%)
Query: 64 KKLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNH 123
++ EI + + H LPPT ++ + VPGPTIE G + W N +P
Sbjct: 33 RETEIALRPTWVRLHPQLPPTLMWGY-----DGQVPGPTIEVRRGQRVRIAWTNRIPKGS 87
Query: 124 ILPID----PTIPTAMPS-----NKKGVP-----------TVVHLHGGIDEPESDGYAKS 163
P+ P P P+ + GV +V HLHG +DG+A +
Sbjct: 88 EYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTGGGNDGWADN 147
Query: 164 WFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEA 223
GF + + Y N Q WYHDH M +TR N++AGL G Y++R D E
Sbjct: 148 --AVGFGDA------QLSEYPNDHQATQWWYHDHAMNITRWNVMAGLYGTYLVRD-DEED 198
Query: 224 PLRLPSGDVFDRPLFVFDRNFLTNGSIYMNS---------TGNNPSIHPQWQPEYFGDVI 274
L LPSGD + PL + DRN T+ +N +NP +FG
Sbjct: 199 ALGLPSGD-REIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYT 257
Query: 275 VVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLR-----FIH-VGSDSAYLGKPV 328
VNG+ WP V YR R++NASNA + +H +GSD L +PV
Sbjct: 258 TVNGRIWPYADVDDGWYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPV 317
Query: 329 -VTNDTVL-----APAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVNDANG-----K 377
V D L APAE D+++DF L + P PAG P D G +
Sbjct: 318 PVDFDDTLPVLSAAPAERFDLLVDFRALGGRRLRLVDKGPG-APAGTP--DPLGGVRYPE 374
Query: 378 VMKFIILKNRETDPWRVPE----------------------------------KLIEYPS 403
VM+F + + E D + +PE ++ E
Sbjct: 375 VMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHGHRLIVLTPPGTKGSGGHPEIWEMAE 434
Query: 404 ADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDPV--TETPKTLDQTELVNLE---- 457
+ A + + T G+ A+T D + T T +Q +NL
Sbjct: 435 VEDPADVQVPAEGVIQVTGADGRTKTYRRTARTFNDGLGFTIGEGTHEQWTFLNLSPILH 494
Query: 458 -------EFKACMNKINDAIKCNLSKHAC------GKKQAVPV--HEQGWKNVYKITPGY 502
+F+ DA +L+ VP+ +E G K+V+++
Sbjct: 495 PMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQ 554
Query: 503 VTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMRPLKLI 550
R++ +F + ++YHCH+L+HED MMRP ++
Sbjct: 555 GLRVMGKFDGAYGR------------FMYHCHLLEHEDMGMMRPFVVM 590
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 128/458 (27%), Positives = 188/458 (41%), Gaps = 68/458 (14%)
Query: 99 PGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESD 158
PGPT + G++T V + N P VHLHG D
Sbjct: 67 PGPTFQVPRGVETVVRF---------------------INNAEAPNSVHLHGSFSRAAFD 105
Query: 159 GYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRH 218
G+A+ G + + Y+Y N Q WYHDH M +T N G G Y+L
Sbjct: 106 GWAEDITEPG--------SFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTD 157
Query: 219 PDVEAPLRLPSG-DVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVN 277
P E L LPSG FD P+ + + + NG++ + N ++GDVI VN
Sbjct: 158 P-AEDALNLPSGYGEFDIPMILTSKQYTANGNLVTTNGELN---------SFWGDVIHVN 207
Query: 278 GKAWPRMTVRRRKYRFRIINA--SNAXXXXXXXTNG----LRFIHVGSDSAYLGKPVVTN 331
G+ WP V RKYRFR ++A S + T+ L F + SDS L P T+
Sbjct: 208 GQPWPFKNVEPRKYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADTS 267
Query: 332 DTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVN-DANGKVMKFIILKN-RET 389
++ AE +VV DFS+ L N G + D KVM+F++ + +
Sbjct: 268 LLYISMAERYEVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQP 327
Query: 390 DPWRVPEKL--IEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAKTLEDPVTETPKT 447
D VP L + +PS + R+ + G + N PV T
Sbjct: 328 DTSVVPANLRDVPFPSPTTNTPRQFRFGRTGPTWTINGVAFADVQNRLLANVPV----GT 383
Query: 448 LDQTELVNLEEFKACMNKINDAIKCNLSKHACGKKQAVPVHEQGWKNVYKITPGYVTRIL 507
+++ EL+N I+ +S+ + + V +E G K+V + G ++
Sbjct: 384 VERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWL--GRRETVV 441
Query: 508 VRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMM 544
V Y PF PG Y++HCH L HED+ MM
Sbjct: 442 VEAHYA------PF-----PGVYMFHCHNLIHEDHDMM 468
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 148/381 (38%), Gaps = 68/381 (17%)
Query: 185 NMQQPGNT-WYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRN 243
N+ QP T W+H H G T + GL G ++ ++ + + D P+ V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK 161
Query: 244 FLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXX 303
F +G I ++ +FGD ++ NG +P+ R R R++N NA
Sbjct: 162 FSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARS 215
Query: 304 XXXXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSE-----------STS 352
++ + SD L +PV ++ + E +V+++ ++ S
Sbjct: 216 LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQM 275
Query: 353 DVAILANDAPYPYPAGNPVN-DANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAAST 411
+AI D P+P P+ A+G +P+ L P+ T
Sbjct: 276 GMAIAPFDKPHPVMRIQPIAISASGA----------------LPDTLSSLPALPSLEGLT 319
Query: 412 TRYIAMYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIK 471
R + + S G + A + P+ K Q E + ++ + D +
Sbjct: 320 VRKLQL----SMDGGANKINGQAFDMNKPMFAAAK--GQYE-------RWVISGVGDMML 366
Query: 472 CNLSKHAC--------GKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDA 523
H GK A H GWK+ K+ G V+ +LV+F++ DA
Sbjct: 367 HPFHIHGTQFRILSENGKPPA--AHRAGWKDTVKVE-GNVSEVLVKFNH---------DA 414
Query: 524 TAEPGYVYHCHILDHEDNIMM 544
E Y+ HCH+L+HED MM
Sbjct: 415 PKEHAYMAHCHLLEHEDTGMM 435
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 110/435 (25%), Positives = 175/435 (40%), Gaps = 74/435 (17%)
Query: 138 NKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDH 197
NK PT+VH HG +D + T G + Y + + + G YH H
Sbjct: 54 NKLTEPTIVHWHGFDVNWHNDAHPSFAITPG--------ESYNYSFDVVNRAGTYLYHPH 105
Query: 198 TMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGN 257
GLT G +G I+ D + L G V D PL + DR F+ +Y
Sbjct: 106 PHGLTAKQFYMGQLGLVIVE--DSGSDLGFKYG-VNDLPLVISDRRFIGGAPVY------ 156
Query: 258 NPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXT--NG---- 311
NP+ + + G+ ++VNG + YR R++N SNA NG
Sbjct: 157 NPTPM-EMIAGFLGNAVLVNGVKDAVFKLSGGSYRLRLVNGSNARLYMLSIVKKNGDVVP 215
Query: 312 LRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILAND--APYPYPAGN 369
+R I V D +L +P+ LAPAE A+VV++ E V +L N P G+
Sbjct: 216 MRLIAV--DQGFLARPIEVRALFLAPAERAEVVVELGEG---VYLLKNTPFDPMHLEMGH 270
Query: 370 PVNDA-----NGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRY---IAMYEYT 421
+ +A + F++ E P E L + P T R+ ++ ++T
Sbjct: 271 GMQEALPEGSEYTIATFLVEGKGEAVP---VEALSDPPPEPPKPTRTRRFALSLSGMQWT 327
Query: 422 SNTGKPTHLLINAKTLEDPVTE--TPKTLDQTELVN----------LEEFKACMNKINDA 469
N + NA +P+ E + + ++ E+VN L F + + D+
Sbjct: 328 ING-----MFWNAS---NPLFEHVSVEGVELWEIVNDKASMPHPMHLHGFPMWIIERKDS 379
Query: 470 IKCNLSKHACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGY 529
+ +++ A + +P + G K+ I PG +I+V F +PF
Sbjct: 380 PR-QVAELAVDNRGRLPT-DLGLKDTVLIWPGETVKIVVNFDAKKRGQLFPF-------- 429
Query: 530 VYHCHILDHEDNIMM 544
HCH L+HED MM
Sbjct: 430 --HCHNLEHEDGGMM 442
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 110/482 (22%), Positives = 176/482 (36%), Gaps = 93/482 (19%)
Query: 83 PTPVFAFGTSS--LT--ASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSN 138
PTP+ G + LT S PGPT+ +T +N LP
Sbjct: 25 PTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPE----------------- 67
Query: 139 KKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEE--KGPTWTNETYHYHNMQQPGNTWYHD 196
PT +H HG P+ D F E G +WT E + G WYH
Sbjct: 68 ----PTNLHWHGLPISPKVDD--------PFLEIPPGESWTYEFTVPKELA--GTFWYHP 113
Query: 197 HTMGLTRVNLLAGLIGAYILRHPDVEAPL-RLPSGDVFDRPLFVFDRNFLTNGSIYMNST 255
H G L AGL+GA + VE+ L +P + L V +
Sbjct: 114 HLHGRVAPQLFAGLLGALV-----VESSLDAIPELREAEEHLLVLKD---------LALQ 159
Query: 256 GNNPSIHP--QWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLR 313
G P+ H W GD+++VNG P + ++ R R++NASNA +
Sbjct: 160 GGRPAPHTPMDWMNGKEGDLVLVNGALRPTLVAQKATLRLRLLNASNARYYRLALQDHPL 219
Query: 314 FIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPA------ 367
++ + +D +L +P+ ++ +LAP E A+V++ + L PY A
Sbjct: 220 YL-IAADGGFLEEPLEVSELLLAPGERAEVLVRLRKEGR---FLLQALPYDRGAMGMMDM 275
Query: 368 -----GNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTS 422
P + + + ++I +P+ L +P+ L A TR + + E
Sbjct: 276 GGMAHAMPQGPSRPETLLYLIAPKNPKP-LPLPKALSPFPT--LPAPVVTRRLVLTEDMM 332
Query: 423 NTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSKHACGKK 482
IN + + + E+ +E ++ ++
Sbjct: 333 A----ARFFINGQVFDHRRVDLKGQAQTVEVWEVEN----QGDMDHPFHLHVHPFQVLSV 384
Query: 483 QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNI 542
P + WK+V + G V R+LV P V+HCHI++HED
Sbjct: 385 GGRPFPYRAWKDVVNLKAGEVARLLV-----------PLREKGR--TVFHCHIVEHEDRG 431
Query: 543 MM 544
MM
Sbjct: 432 MM 433
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 12/176 (6%)
Query: 187 QQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSG-DVFDRPLFVFDRNFL 245
Q WYH +T T + GL G +++ +V L +P+ V D P+ + D+
Sbjct: 107 QNAATLWYHANTPNRTAQQVYNGLAGMWLVED-EVSKSLPIPNHYGVDDFPVIIQDKRLD 165
Query: 246 TNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXX 305
G+ N G+ + GD ++VNG P + V R R R++NASN+
Sbjct: 166 NFGTPEYNEPGSG---------GFVGDTLLVNGVQSPYVEVSRGWVRLRLLNASNSRRYQ 216
Query: 306 XXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDA 361
+G + D +L PV LAP E ++++D S +V+I +A
Sbjct: 217 LQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNG-DEVSITCGEA 271
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 27/255 (10%)
Query: 95 TASVPGPTIEALHGIDT-YVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGID 153
T + IE + G T + T+ +P I + + NK T +H HG
Sbjct: 54 TLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPV 113
Query: 154 EPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNT-WYHDHTMGLTRVNLLAGLIG 212
P+ DG AG E Y + Q T WYH H + GL G
Sbjct: 114 PPDQDGSPHDPILAGEER--------IYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAG 165
Query: 213 AYILR-HPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFG 271
A++++ D + L+ ++ L + D N I N+ + W G
Sbjct: 166 AFVIKAKKDALSHLK-------EKDLMISDLRLDENAQIPNNNLND-------WLNGREG 211
Query: 272 DVIVVNGKAWPRMTVRRRKYRFRIINASNAXXXXXXXTNGLRFIHVGSDSAYLGKPVVTN 331
+ +++NG+ P++ + + R RI NA+ A G +FI VG+D + K +
Sbjct: 212 EFVLINGQFKPKIKLATNE-RIRIYNAT-AARYLNLRIQGAKFILVGTDGGLIEKTIYKE 269
Query: 332 DTVLAPAEIADVVID 346
+ L+PA +V+ID
Sbjct: 270 ELFLSPASRVEVLID 284
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 530 VYHCHILDHEDNIMMRPLKL 549
+YHCHIL+HED MM L++
Sbjct: 460 MYHCHILEHEDLGMMGNLEV 479
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Query: 185 NMQQPGNT-WYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRN 243
N+ QP T W+H H G T + GL G ++ ++ + + D P+ V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK 161
Query: 244 FLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXX 303
F +G I ++ +FGD ++ NG +P+ R R R++N NA
Sbjct: 162 FSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARS 215
Query: 304 XXXXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSE-----------STS 352
++ + SD L +PV ++ + E +V+++ ++ S
Sbjct: 216 LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQM 275
Query: 353 DVAILANDAPYPYPAGNPV 371
+AI D P+P P+
Sbjct: 276 GMAIAPFDKPHPVMRIQPI 294
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 487 VHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMM 544
H GWK+ K+ G V+ +LV+F++ DA E Y+ HCH+L+HED MM
Sbjct: 436 AHRAGWKDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHEDTGMM 483
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Query: 185 NMQQPGNT-WYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRN 243
N+ QP T W+H H G T + GL G ++ ++ + + D P+ V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK 161
Query: 244 FLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXX 303
F +G I ++ +FGD ++ NG +P+ R R R++N NA
Sbjct: 162 FSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARS 215
Query: 304 XXXXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSE-----------STS 352
++ + SD L +PV ++ + E +V+++ ++ S
Sbjct: 216 LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQM 275
Query: 353 DVAILANDAPYPYPAGNPV 371
+AI D P+P P+
Sbjct: 276 GMAIAPFDKPHPVMRIQPI 294
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 487 VHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMRP 546
H GWK+ K+ G V+ +LV+F++ DA E Y+ HCH+L+HED MM
Sbjct: 436 AHRAGWKDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHEDTGMMLG 485
Query: 547 LKLIK 551
+++
Sbjct: 486 FTVLQ 490
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Query: 185 NMQQPGNT-WYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRN 243
N+ QP T W+H H G T + GL G ++ ++ + + D P+ V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK 161
Query: 244 FLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXX 303
F +G I ++ +FGD ++ NG +P+ R R R++N NA
Sbjct: 162 FSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARS 215
Query: 304 XXXXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSE-----------STS 352
++ + SD L +PV ++ + E +V+++ ++ S
Sbjct: 216 LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQM 275
Query: 353 DVAILANDAPYPYPAGNPV 371
+AI D P+P P+
Sbjct: 276 GMAIAPFDKPHPVMRIQPI 294
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 487 VHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMRP 546
H GWK+ K+ G V+ +LV+F++ DA E Y+ H H+L+HED MM
Sbjct: 436 AHRAGWKDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHSHLLEHEDTGMMLG 485
Query: 547 LKLIK 551
+++
Sbjct: 486 FTVLQ 490
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Query: 185 NMQQPGNT-WYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRN 243
N+ QP T W+H H G T + GL G ++ ++ + + D P+ V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK 161
Query: 244 FLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXX 303
F +G I ++ +FGD ++ NG +P+ R R R++N NA
Sbjct: 162 FSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARS 215
Query: 304 XXXXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSE-----------STS 352
++ + SD L +PV ++ + E +V+++ ++ S
Sbjct: 216 LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQM 275
Query: 353 DVAILANDAPYPYPAGNPV 371
+AI D P+P P+
Sbjct: 276 GMAIAPFDKPHPVMRIQPI 294
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 487 VHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMRP 546
H GWK+ K+ G V+ +LV+F++ DA E Y+ HCH+L+H+D MM
Sbjct: 436 AHRAGWKDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHDDTGMMLG 485
Query: 547 LKLIK 551
+++
Sbjct: 486 FTVLQ 490
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Query: 185 NMQQPGNT-WYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRN 243
N+ QP T W+H H G T + GL G ++ ++ + + D P+ V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK 161
Query: 244 FLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXX 303
F +G I ++ +FGD ++ NG +P+ R R R++N NA
Sbjct: 162 FSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARS 215
Query: 304 XXXXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSE-----------STS 352
++ + SD L +PV ++ + E +V+++ ++ S
Sbjct: 216 LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQM 275
Query: 353 DVAILANDAPYPYPAGNPV 371
+AI D P+P P+
Sbjct: 276 GMAIAPFDKPHPVMRIQPI 294
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 487 VHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMM 544
H GWK+ K+ G V+ +LV+F++ DA E Y+ HCH+L+HED MM
Sbjct: 436 AHRAGWKDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHEDTGMM 483
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Query: 185 NMQQPGNT-WYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRN 243
N+ QP T W+H H G T + GL G ++ ++ + + D P+ V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK 161
Query: 244 FLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXX 303
F +G I ++ +FGD ++ NG +P+ R R R++N NA
Sbjct: 162 FSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARS 215
Query: 304 XXXXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSE-----------STS 352
++ + SD L +PV ++ + E +V+++ ++ S
Sbjct: 216 LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQM 275
Query: 353 DVAILANDAPYPYPAGNPV 371
+AI D P+P P+
Sbjct: 276 GMAIAPFDKPHPVMRIQPI 294
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 487 VHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMMRP 546
H GWK+ K+ G V+ +LV+F++ DA E Y+ HCH+L+HED MM
Sbjct: 436 AHRAGWKDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHEDTGMMLG 485
Query: 547 LKLIK 551
+++
Sbjct: 486 FTVLQ 490
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Query: 185 NMQQPGNT-WYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRN 243
N+ QP T W+H H G T + GL G ++ ++ + + D P+ V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK 161
Query: 244 FLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNAXX 303
F +G I ++ +FGD ++ NG +P+ R R R++N NA
Sbjct: 162 FSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARS 215
Query: 304 XXXXXTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSE-----------STS 352
++ + SD L +PV ++ + E +V+++ ++ S
Sbjct: 216 LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQM 275
Query: 353 DVAILANDAPYPYPAGNPV 371
+AI D P+P P+
Sbjct: 276 GMAIAPFDKPHPVMRIQPI 294
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 487 VHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNIMM 544
H GWK+ K+ G V+ +LV+F++ DA E Y+ H H+L+H+D MM
Sbjct: 436 AHRAGWKDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHSHLLEHQDTGMM 483
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 98/267 (36%), Gaps = 52/267 (19%)
Query: 89 FGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHL 148
F T + VP P I + G D T +N +P +H
Sbjct: 22 FHTFAFNGQVPAPLIHVMEGDDV---------------------TVNVTNMTTLPHTIHW 60
Query: 149 HGGIDEP--ESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQP-GNTWYHDHTMGLTRVN 205
HG + +SDG + T E G T+T Y +P G WYH H + +
Sbjct: 61 HGMLQRGTWQSDGVPHA--TQHAIEPGDTFT-----YKFKAEPAGTMWYHCH-VNVNEHV 112
Query: 206 LLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQW 265
+ G+ G I+ + + PL + D L + D +++S N P
Sbjct: 113 TMRGMWGPLIV---EPKNPLPIEKTVTKDYILMLSD---------WVSSWANKPG--EGG 158
Query: 266 QPEYFGDVIVVNGKAWPRMT-VRRRK---YRFRIINASNAXXXXXXXTNGLRFIHVGSDS 321
P D +N K++P +R +K R R+I A + T+G D
Sbjct: 159 IPGDVFDYYTINAKSFPETQPIRVKKGDVIRLRLIGAGD--HVHAIHTHGHISQIAFKDG 216
Query: 322 AYLGKPVVTNDTVLAPAEIADVVIDFS 348
L KP+ + ++ P E DV+++
Sbjct: 217 FPLDKPIKGDTVLIGPGERYDVILNMD 243
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 417 MYEYTSNTGKPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSK 476
++ + +N P + LIN DP K L ++ E+ AC+ + N + C L
Sbjct: 299 VFTFKTNRHSPNYRLINID-FTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD 356
Query: 477 HACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS--YPFDATAEPGYVYHCH 534
K + +H+ + KI P V + V +S + Y F + PG +YHC
Sbjct: 357 ----VKNTLQLHDLATGALLKIFPLEVGSV-VGYSGQKKDTEIFYCFTSFLSPGIIYHCD 411
Query: 535 ILDHE 539
+ E
Sbjct: 412 LTKEE 416
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 205 NLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQ 264
N +AG + Y+LR+PD++ L + + + +F+ + NG I N + +I
Sbjct: 5 NYIAGTLSFYVLRNPDLDREL-INDYAPYSSSISIFEYHIAPNGDI-ANQLNDAAAIETT 62
Query: 265 WQ 266
WQ
Sbjct: 63 WQ 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,497,273
Number of Sequences: 62578
Number of extensions: 847149
Number of successful extensions: 1820
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 61
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)