Query 008840
Match_columns 551
No_of_seqs 283 out of 2173
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 17:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10965 multicopper oxidase; 100.0 3.4E-87 7.3E-92 725.1 50.2 439 43-550 32-523 (523)
2 PRK10883 FtsI repressor; Provi 100.0 6.6E-85 1.4E-89 701.3 48.6 427 43-551 32-469 (471)
3 PLN02835 oxidoreductase 100.0 6E-66 1.3E-70 561.0 47.3 411 65-551 31-513 (539)
4 TIGR01480 copper_res_A copper- 100.0 2.7E-65 5.9E-70 558.2 43.7 402 65-550 47-587 (587)
5 TIGR03389 laccase laccase, pla 100.0 3.5E-63 7.6E-68 543.2 44.2 415 65-550 5-520 (539)
6 PLN02354 copper ion binding / 100.0 7.6E-63 1.7E-67 537.5 44.2 410 65-550 29-519 (552)
7 PLN02168 copper ion binding / 100.0 9.2E-62 2E-66 527.0 43.5 411 65-549 28-515 (545)
8 PLN02991 oxidoreductase 100.0 2E-61 4.3E-66 523.5 45.7 410 66-551 31-512 (543)
9 PLN00044 multi-copper oxidase- 100.0 1.6E-60 3.5E-65 519.2 45.1 418 65-551 29-535 (596)
10 PLN02792 oxidoreductase 100.0 2.1E-60 4.5E-65 516.1 41.9 413 65-551 18-505 (536)
11 TIGR03388 ascorbase L-ascorbat 100.0 2.1E-60 4.6E-65 521.0 42.4 412 66-549 4-523 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.9E-60 4.2E-65 520.0 41.6 412 66-551 11-533 (538)
13 PLN02604 oxidoreductase 100.0 1.2E-59 2.6E-64 516.6 44.7 414 66-549 27-546 (566)
14 PLN02191 L-ascorbate oxidase 100.0 5.7E-59 1.2E-63 510.4 44.1 418 66-548 26-545 (574)
15 COG2132 SufI Putative multicop 100.0 3.6E-58 7.8E-63 495.4 42.1 402 67-550 36-449 (451)
16 KOG1263 Multicopper oxidases [ 100.0 1.2E-50 2.7E-55 437.1 36.0 400 83-551 46-537 (563)
17 TIGR02376 Cu_nitrite_red nitri 100.0 5.1E-43 1.1E-47 358.2 28.1 248 64-361 28-280 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 8.8E-31 1.9E-35 230.1 10.5 111 72-219 4-116 (117)
19 PF00394 Cu-oxidase: Multicopp 99.8 2.5E-19 5.5E-24 166.5 9.6 121 234-360 2-136 (159)
20 PF07731 Cu-oxidase_2: Multico 99.7 1.9E-18 4.1E-23 156.6 7.5 87 448-550 43-135 (138)
21 TIGR03095 rusti_cyanin rusticy 99.6 1.6E-14 3.5E-19 131.8 11.8 95 98-217 49-148 (148)
22 TIGR01480 copper_res_A copper- 99.4 6.1E-13 1.3E-17 146.7 11.0 101 83-217 484-587 (587)
23 TIGR02376 Cu_nitrite_red nitri 99.1 2E-08 4.4E-13 103.3 22.0 221 271-550 47-296 (311)
24 TIGR03096 nitroso_cyanin nitro 98.9 1.2E-08 2.6E-13 90.6 9.3 93 64-200 27-122 (135)
25 PRK10965 multicopper oxidase; 98.4 1.5E-05 3.2E-10 87.7 19.0 84 274-359 414-506 (523)
26 TIGR03389 laccase laccase, pla 98.4 7.3E-05 1.6E-09 83.0 24.4 76 101-199 187-265 (539)
27 PF07731 Cu-oxidase_2: Multico 98.3 1.8E-06 4E-11 77.9 7.2 91 98-217 31-135 (138)
28 PRK02710 plastocyanin; Provisi 98.2 5.2E-05 1.1E-09 66.9 13.8 74 100-217 46-119 (119)
29 PRK10883 FtsI repressor; Provi 98.2 8.8E-05 1.9E-09 80.8 18.3 80 273-359 362-451 (471)
30 PLN02835 oxidoreductase 98.0 0.0013 2.7E-08 72.9 23.8 80 94-197 196-278 (539)
31 TIGR02656 cyanin_plasto plasto 98.0 3E-05 6.5E-10 66.1 8.7 83 100-217 16-99 (99)
32 TIGR03388 ascorbase L-ascorbat 98.0 0.00064 1.4E-08 75.5 21.0 77 101-200 203-283 (541)
33 COG2132 SufI Putative multicop 97.9 0.00041 8.8E-09 75.4 17.8 87 270-360 341-433 (451)
34 PLN02604 oxidoreductase 97.9 0.00082 1.8E-08 75.0 19.8 74 284-360 441-531 (566)
35 TIGR03390 ascorbOXfungal L-asc 97.8 0.003 6.6E-08 70.1 21.6 76 100-198 197-283 (538)
36 PLN02168 copper ion binding / 97.4 0.015 3.3E-07 64.4 20.9 202 272-511 46-266 (545)
37 PF00127 Copper-bind: Copper b 97.4 0.00041 8.9E-09 59.0 6.8 81 100-217 16-99 (99)
38 PLN02792 oxidoreductase 97.4 0.016 3.4E-07 64.2 20.6 202 272-511 36-258 (536)
39 TIGR02657 amicyanin amicyanin. 97.4 0.0014 2.9E-08 53.9 9.4 74 100-217 10-83 (83)
40 PLN02354 copper ion binding / 97.4 0.016 3.4E-07 64.5 20.6 202 272-511 47-272 (552)
41 PLN02991 oxidoreductase 97.4 0.018 3.9E-07 63.7 20.5 202 272-511 48-267 (543)
42 PF13473 Cupredoxin_1: Cupredo 97.3 0.0004 8.6E-09 59.6 5.5 70 101-216 35-104 (104)
43 TIGR02375 pseudoazurin pseudoa 97.0 0.0045 9.7E-08 54.2 8.8 76 100-220 14-90 (116)
44 COG3794 PetE Plastocyanin [Ene 97.0 0.0046 9.9E-08 54.8 8.7 76 100-218 53-128 (128)
45 PRK02888 nitrous-oxide reducta 96.8 0.0033 7.2E-08 69.4 8.2 80 100-217 554-633 (635)
46 PLN02191 L-ascorbate oxidase 96.7 0.13 2.9E-06 57.5 20.0 86 271-364 42-130 (574)
47 TIGR03102 halo_cynanin halocya 96.6 0.013 2.8E-07 51.2 8.9 75 100-217 41-115 (115)
48 PLN00044 multi-copper oxidase- 96.5 0.32 7E-06 54.5 21.3 204 272-512 49-283 (596)
49 PF00394 Cu-oxidase: Multicopp 96.5 0.0065 1.4E-07 56.3 6.7 76 99-197 58-136 (159)
50 PF06525 SoxE: Sulfocyanin (So 96.3 0.069 1.5E-06 50.6 12.3 109 85-219 74-188 (196)
51 PF07732 Cu-oxidase_3: Multico 96.2 0.0083 1.8E-07 52.7 5.2 41 497-550 73-114 (117)
52 TIGR03094 sulfo_cyanin sulfocy 96.2 0.05 1.1E-06 50.6 10.3 100 101-219 85-187 (195)
53 KOG1263 Multicopper oxidases [ 95.4 0.99 2.2E-05 50.2 18.6 204 271-512 47-275 (563)
54 TIGR03095 rusti_cyanin rusticy 95.3 0.014 3E-07 53.5 3.2 24 526-549 123-147 (148)
55 TIGR02656 cyanin_plasto plasto 95.0 0.029 6.4E-07 47.6 4.0 39 493-549 59-98 (99)
56 COG4454 Uncharacterized copper 92.5 0.27 5.9E-06 44.7 5.6 49 488-550 108-157 (158)
57 PF00127 Copper-bind: Copper b 92.0 0.24 5.3E-06 41.9 4.6 38 494-549 60-98 (99)
58 PF12690 BsuPI: Intracellular 86.2 7.5 0.00016 31.7 9.0 68 290-358 3-81 (82)
59 COG4454 Uncharacterized copper 85.6 6.7 0.00014 35.9 9.1 99 97-217 59-157 (158)
60 TIGR02695 azurin azurin. Azuri 82.8 8.5 0.00018 34.0 8.3 39 169-215 84-124 (125)
61 PF00116 COX2: Cytochrome C ox 81.8 9.4 0.0002 33.5 8.4 75 100-216 45-119 (120)
62 PRK02710 plastocyanin; Provisi 77.5 2.9 6.4E-05 36.6 3.8 36 496-549 82-118 (119)
63 TIGR02866 CoxB cytochrome c ox 77.2 11 0.00025 36.1 8.2 79 100-220 116-194 (201)
64 COG1622 CyoA Heme/copper-type 67.1 31 0.00067 34.4 8.7 79 100-220 136-214 (247)
65 TIGR02375 pseudoazurin pseudoa 65.0 8.8 0.00019 33.6 3.9 24 526-551 64-88 (116)
66 PF13473 Cupredoxin_1: Cupredo 64.8 8.9 0.00019 32.5 3.9 34 496-547 68-102 (104)
67 TIGR03102 halo_cynanin halocya 62.8 9.8 0.00021 33.2 3.8 35 497-549 79-114 (115)
68 PRK10378 inactive ferrous ion 54.8 71 0.0015 33.9 9.2 76 100-220 43-119 (375)
69 TIGR03079 CH4_NH3mon_ox_B meth 52.7 1.4E+02 0.003 31.4 10.5 14 169-185 339-352 (399)
70 COG3794 PetE Plastocyanin [Ene 48.3 25 0.00054 31.3 3.9 41 491-549 85-126 (128)
71 COG4263 NosZ Nitrous oxide red 47.9 29 0.00064 37.2 5.0 79 101-217 558-636 (637)
72 TIGR02657 amicyanin amicyanin. 47.4 21 0.00046 28.9 3.2 33 497-549 49-82 (83)
73 PF04744 Monooxygenase_B: Mono 40.8 2.8E+02 0.006 29.3 10.6 14 169-185 320-333 (381)
74 smart00758 PA14 domain in bact 39.4 1.3E+02 0.0028 26.3 7.3 63 283-351 51-114 (136)
75 PRK02888 nitrous-oxide reducta 39.3 36 0.00078 38.4 4.3 42 495-550 590-633 (635)
76 PF14344 DUF4397: Domain of un 39.1 2.5E+02 0.0054 24.1 10.8 19 292-311 3-22 (122)
77 PF07691 PA14: PA14 domain; I 38.7 2.1E+02 0.0045 25.0 8.6 63 283-351 53-122 (145)
78 PF07172 GRP: Glycine rich pro 37.8 32 0.00068 29.0 2.8 9 1-10 1-9 (95)
79 PF06525 SoxE: Sulfocyanin (So 30.7 1.3E+02 0.0029 28.8 6.0 24 527-550 162-186 (196)
80 PF11322 DUF3124: Protein of u 30.6 2E+02 0.0044 25.5 6.7 57 290-352 26-82 (125)
81 PF14016 DUF4232: Protein of u 30.6 2.4E+02 0.0053 24.7 7.6 58 289-350 20-83 (131)
82 TIGR02695 azurin azurin. Azuri 30.4 97 0.0021 27.5 4.7 79 283-361 17-112 (125)
83 TIGR03096 nitroso_cyanin nitro 30.0 4.2E+02 0.009 23.9 10.1 65 275-360 53-119 (135)
84 PF01456 Mucin: Mucin-like gly 26.6 45 0.00097 29.9 2.1 16 2-17 1-16 (143)
85 COG5212 PDE1 Low-affinity cAMP 26.0 61 0.0013 32.7 3.0 42 274-316 157-200 (356)
86 PF11614 FixG_C: IG-like fold 25.9 2.1E+02 0.0047 24.5 6.3 50 290-350 34-85 (118)
87 PF14392 zf-CCHC_4: Zinc knuck 23.8 84 0.0018 22.7 2.7 32 498-542 15-46 (49)
88 PF07610 DUF1573: Protein of u 22.3 2.9E+02 0.0063 19.5 5.3 45 292-347 1-45 (45)
89 PF07696 7TMR-DISMED2: 7TMR-DI 21.6 3.6E+02 0.0079 23.2 7.1 61 289-350 48-129 (141)
90 PRK09810 entericidin A; Provis 20.9 93 0.002 22.0 2.2 15 4-18 2-16 (41)
91 PRK09838 periplasmic copper-bi 20.9 5.5E+02 0.012 22.4 7.6 18 104-121 88-105 (115)
92 PRK14864 putative biofilm stre 20.3 1.3E+02 0.0027 25.9 3.4 11 1-11 2-12 (104)
93 PF15470 DUF4637: Domain of un 20.2 21 0.00046 32.0 -1.3 19 526-545 151-169 (173)
No 1
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=3.4e-87 Score=725.10 Aligned_cols=439 Identities=23% Similarity=0.348 Sum_probs=345.2
Q ss_pred ccCCCCccccceeccCCeeeeeeEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCC
Q 008840 43 DELPDMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPN 122 (551)
Q Consensus 43 ~~lp~pp~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~ 122 (551)
.+||+||.+++. ..+ .+++++.+.++++.++. .+.+|+|| |++||||||+++||+|+|+++|+|++
T Consensus 32 ~~lp~p~~l~~~--~~~-----~~~L~~~~~~~~~~~~~-~t~~~~yN-----g~~PGPtIr~~~Gd~v~v~~~N~L~~- 97 (523)
T PRK10965 32 PALPIPPLLTPD--ARG-----RIQLTIQAGQSSFAGKT-ATATWGYN-----GNLLGPAVRLQRGKAVTVDITNQLPE- 97 (523)
T ss_pred CCCCCCccccCC--CCc-----cEEEEEEEEEEEecCCc-eeEEEEEC-----CCCCCceEEEECCCEEEEEEEECCCC-
Confidence 589999999752 122 35677778888997765 57799998 99999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCch
Q 008840 123 HILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLT 202 (551)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t 202 (551)
+|+|||||+++++.+||+| ||+|.||++| +|+|+++|++||||||+|.|+.|
T Consensus 98 --------------------~ttiHwHGl~~~~~~DG~p-----q~~I~PG~s~---~Y~f~~~q~aGT~WYH~H~~g~t 149 (523)
T PRK10965 98 --------------------ETTLHWHGLEVPGEVDGGP-----QGIIAPGGKR---TVTFTVDQPAATCWFHPHQHGKT 149 (523)
T ss_pred --------------------CccEEcccccCCCccCCCC-----CCCCCCCCEE---EEEeccCCCCceEEEecCCCCCc
Confidence 8999999999999999987 5689999999 99999988899999999999999
Q ss_pred hhhhhccceEEEEEeCCCCCCCCCCCCCC-cCceeEEEEEeeecCCCceEecCCCCCCCCCCCCCCccCCceEEECCccc
Q 008840 203 RVNLLAGLIGAYILRHPDVEAPLRLPSGD-VFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAW 281 (551)
Q Consensus 203 ~~qv~~GL~G~~iV~dp~~~~~~~lP~~~-~~e~~lvl~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~lVNG~~~ 281 (551)
+.|+++||+|+|||+|++ +.++.+|+.+ .+|++|+||||.++.+|++.|.... ..+..+..||.++|||+.+
T Consensus 150 ~~Qv~~GL~G~lIV~d~~-~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~------~~~~~g~~gd~~lVNG~~~ 222 (523)
T PRK10965 150 GRQVAMGLAGLVLIEDDE-SLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDV------MTAAVGWFGDTLLTNGAIY 222 (523)
T ss_pred HHHHhCcCeEEEEEcCcc-ccccCCcccCCCceeeEEEEeeeeCCCCceeccccc------cccccCccCCeEEECCccc
Confidence 999999999999999876 5566677622 5799999999999999987654321 1223456799999999999
Q ss_pred CceeecCeEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCC
Q 008840 282 PRMTVRRRKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDA 361 (551)
Q Consensus 282 P~~~v~~~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~ 361 (551)
|++++++++|||||||+|++++|+|++.+||+|+|||+||+++.+|+.+++|.|+|||||||+|++++ ++++.|.+..
T Consensus 223 p~~~v~~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~--~~~~~l~~~~ 300 (523)
T PRK10965 223 PQHAAPRGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD--GKAFDLVTLP 300 (523)
T ss_pred ceeecCCCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC--CceEEEEEec
Confidence 99999889999999999999999999977999999999999999999999999999999999999987 3588888764
Q ss_pred CCCCCCCCCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeecc--c---------CCC-----
Q 008840 362 PYPYPAGNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYT--S---------NTG----- 425 (551)
Q Consensus 362 ~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~--~---------~~g----- 425 (551)
......+.........+++|++.+. .+...+|++|.++++++.......|++.|.... + ..+
T Consensus 301 ~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~ 378 (523)
T PRK10965 301 VSQMGMALAPFDKPLPVLRIQPLLI--SASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMA 378 (523)
T ss_pred ccCcccccccCCCceeEEEEeccCc--CCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhhccccccccccc
Confidence 3211101111112346888887632 245578999887765443222233444331100 0 000
Q ss_pred --------------------------Cc-----ceEEEcccccCCCCCC-Ccc--eeeeEEEEeeee-eeeeeccccCce
Q 008840 426 --------------------------KP-----THLLINAKTLEDPVTE-TPK--TLDQTELVNLEE-FKACMNKINDAI 470 (551)
Q Consensus 426 --------------------------~~-----~~~~INg~~f~~~~~~-~~~--~~~~~~l~n~~~-~~~~~~~~~~~~ 470 (551)
.. ..|+|||+.|++.... .++ .+|+|++.|.+. +.|++|.|++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~-- 456 (523)
T PRK10965 379 GMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGT-- 456 (523)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCc--
Confidence 00 1158999999864332 222 389999999985 6899999998
Q ss_pred eeeeeeeccCCccCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 471 KCNLSKHACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 471 ~~~v~~~~~G~~~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
+|+|.. .+| .++...+.+|||||+|+| ++++|+++|+. .+ +++| ||||||||||||+|||++|+|
T Consensus 457 ~F~Vl~-~~g--~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~--~~--------~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 457 QFRILS-ENG--KPPAAHRAGWKDTVRVEG-GRSEVLVKFDH--DA--------PKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred EEEEEE-ecC--CCCCccccccccEEEECC-cEEEEEEEecC--CC--------CCCCCEEEEeCchhhhccCccceeEe
Confidence 456655 477 456667899999999987 88999999983 21 2456 999999999999999999999
Q ss_pred c
Q 008840 550 I 550 (551)
Q Consensus 550 ~ 550 (551)
+
T Consensus 523 ~ 523 (523)
T PRK10965 523 S 523 (523)
T ss_pred C
Confidence 6
No 2
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=6.6e-85 Score=701.27 Aligned_cols=427 Identities=19% Similarity=0.281 Sum_probs=338.4
Q ss_pred ccCCCCccccceeccCCeeeeeeEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCC
Q 008840 43 DELPDMPKIKGYYAANGVVKPKKLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPN 122 (551)
Q Consensus 43 ~~lp~pp~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~ 122 (551)
.+|++||.+++.. +. .++|++.+..+++.++. .+.+|+|| |++||||||+++||+|+|+++|+|++
T Consensus 32 ~~l~~p~~l~~~~---~~----~~~l~~~~~~~~~~~g~-~~~v~~~n-----g~~pGPtir~~~Gd~v~v~v~N~L~~- 97 (471)
T PRK10883 32 QPLPVPPLLESRR---GQ----PLFLTLQRAHWSFTGGT-KASVWGIN-----GRYLGPTIRVWKGDDVKLIYSNRLTE- 97 (471)
T ss_pred CCCCCCccccCCC---CC----cEEEEEEEeEEEecCCc-eeeEEEEC-----CcccCCeEEEECCCEEEEEEEeCCCC-
Confidence 5899999987422 32 35777888888997765 78899998 99999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCch
Q 008840 123 HILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLT 202 (551)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t 202 (551)
+|++||||+++++.+||.+. +.|.||++| +|+|+++|++||||||+|.++.+
T Consensus 98 --------------------~ttiHwHGl~~~~~~~~g~~-----~~I~PG~~~---~y~f~~~~~aGT~WYH~H~~~~t 149 (471)
T PRK10883 98 --------------------PVSMTVSGLQVPGPLMGGPA-----RMMSPNADW---APVLPIRQNAATCWYHANTPNRM 149 (471)
T ss_pred --------------------CCceeECCccCCCCCCCCcc-----ccCCCCCeE---EEEEecCCCceeeEEccCCCCch
Confidence 89999999999988555443 258899999 99999988899999999999999
Q ss_pred hhhhhccceEEEEEeCCCCCCCCCCCCCC-cCceeEEEEEeeecCCCceEecCCCCCCCCCCCCCCccCCceEEECCccc
Q 008840 203 RVNLLAGLIGAYILRHPDVEAPLRLPSGD-VFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAW 281 (551)
Q Consensus 203 ~~qv~~GL~G~~iV~dp~~~~~~~lP~~~-~~e~~lvl~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~lVNG~~~ 281 (551)
+.|+++||+|+|||+|++ ++++.+|..+ .+|++|+||||.++.+|++.+.. .+..+..||.++|||+.+
T Consensus 150 ~~qv~~GL~G~lII~d~~-~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~~---------~~~~g~~gd~~lvNG~~~ 219 (471)
T PRK10883 150 AQHVYNGLAGMWLVEDEV-SKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNE---------PGSGGFVGDTLLVNGVQS 219 (471)
T ss_pred hhhHhcCCeEEEEEeCCc-ccccCCcccCCCcceeEEeeeeeeccCCCccccc---------cccCCccCCeeEECCccC
Confidence 999999999999999876 5556667632 45999999999999988765421 123356799999999999
Q ss_pred CceeecCeEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCC
Q 008840 282 PRMTVRRRKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDA 361 (551)
Q Consensus 282 P~~~v~~~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~ 361 (551)
|+++|++++|||||||+|+++.|+|+|+|||+|+|||+||+++.+|+.++.|.|+|||||||+|++++ |+++.|.+..
T Consensus 220 p~~~v~~~~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~--~~~~~l~~~~ 297 (471)
T PRK10883 220 PYVEVSRGWVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN--GDEVSITAGE 297 (471)
T ss_pred CeEEecCCEEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC--CceEEEECCC
Confidence 99999989999999999999999999977999999999999999999999999999999999999976 4588888853
Q ss_pred CCCCCC--CCCCCC----CCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeecccCCCCcceEEEccc
Q 008840 362 PYPYPA--GNPVND----ANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTSNTGKPTHLLINAK 435 (551)
Q Consensus 362 ~~~~~~--g~~~~~----~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~~~INg~ 435 (551)
...... +..... ....++++++.+.....+..+|.+|.+.+ +....+.++|++.+.. ..|.|||+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-~~~~~~~~~~~~~l~~--------~~~~INg~ 368 (471)
T PRK10883 298 AAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPDE-IMEGSPIRSREISLGD--------DLPGINGA 368 (471)
T ss_pred ccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcCCC-CCCCCCcceEEEEecC--------CcCccCCc
Confidence 221110 111111 13468888886532334456788777644 3444556677777642 13689999
Q ss_pred ccCCCCCC-Ccc--eeeeEEEEeeeeeeeeeccccCceeeeeeeeccCCccCCCCcCCCcCccEEeCCCcEEEEEEEEec
Q 008840 436 TLEDPVTE-TPK--TLDQTELVNLEEFKACMNKINDAIKCNLSKHACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSY 512 (551)
Q Consensus 436 ~f~~~~~~-~~~--~~~~~~l~n~~~~~~~~~~~~~~~~~~v~~~~~G~~~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~ 512 (551)
+|++...+ .++ .+|+|++.|. +.|+||.|++. |+|.. .+| .++.++|.+|||||+|+ ++|+|+++|+
T Consensus 369 ~~~~~~~~~~~~~g~~e~W~~~n~--~~HP~HlHg~~--FqVl~-~~G--~~~~~~~~gwkDTV~v~--~~v~i~~~f~- 438 (471)
T PRK10883 369 LWDMNRIDVTAQQGTWERWTVRAD--MPQAFHIEGVM--FLIRN-VNG--AMPFPEDRGWKDTVWVD--GQVELLVYFG- 438 (471)
T ss_pred ccCCCcceeecCCCCEEEEEEECC--CCcCEeECCcc--EEEEE-ecC--CCCCccccCcCcEEEcC--CeEEEEEEec-
Confidence 99875432 232 2899999665 57999999985 46766 477 45566789999999995 4699999999
Q ss_pred cccCC-CCCCCCCCCCceEEeeccccccccCcccceEEcC
Q 008840 513 VHANA-SYPFDATAEPGYVYHCHILDHEDNIMMRPLKLIK 551 (551)
Q Consensus 513 ~~~~~-~~p~~~~~~pg~~~HCHiL~HED~GMM~~~~V~~ 551 (551)
++++ .+ .||||||||||||+|||++|+|+.
T Consensus 439 -~~~~~~~--------~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 439 -QPSWAHF--------PFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred -CCCCCCC--------cEEeecccccccccCCccCeEEec
Confidence 3321 11 399999999999999999999973
No 3
>PLN02835 oxidoreductase
Probab=100.00 E-value=6e-66 Score=561.04 Aligned_cols=411 Identities=15% Similarity=0.166 Sum_probs=293.1
Q ss_pred eEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008840 65 KLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPT 144 (551)
Q Consensus 65 ~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t 144 (551)
++++.+.+...... +. ...+|+|| |++|||+||+++||+|+|+++|+|++ +|
T Consensus 31 ~y~~~v~~~~~~~d-g~-~~~~~~~N-----G~~PGP~I~~~~GD~v~v~v~N~L~~---------------------~t 82 (539)
T PLN02835 31 YYTWTVTYGTISPL-GV-PQQVILIN-----GQFPGPRLDVVTNDNIILNLINKLDQ---------------------PF 82 (539)
T ss_pred EEEEEEEEEEeccC-Ce-EEEEEEEC-----CcCCCCCEEEECCCEEEEEEEeCCCC---------------------CC
Confidence 45555556544442 33 67889998 99999999999999999999999997 89
Q ss_pred EEeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCC
Q 008840 145 VVHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVE 222 (551)
Q Consensus 145 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~ 222 (551)
+|||||+++.+. +||+|+ +||+|+||++| +|+|++.+++||||||+|.. .|+.+||+|+|||++++ +
T Consensus 83 tiHWHGl~~~~~~~~DGv~~---tQ~pI~PG~sf---~Y~F~~~~q~GT~WYHsH~~----~q~~~Gl~G~lIV~~~~-~ 151 (539)
T PLN02835 83 LLTWNGIKQRKNSWQDGVLG---TNCPIPPNSNY---TYKFQTKDQIGTFTYFPSTL----FHKAAGGFGAINVYERP-R 151 (539)
T ss_pred cEEeCCcccCCCCCCCCCcc---CcCCCCCCCcE---EEEEEECCCCEeEEEEeCcc----chhcCcccceeEEeCCC-C
Confidence 999999999865 999985 79999999999 99998755899999999973 48999999999998654 3
Q ss_pred CCCCCCCCCcCceeEEEEEeeecCCCceEecC-CCCCCCCCCCCCCccCCceEEECCcccCceeecC-eEEEEEEEecCC
Q 008840 223 APLRLPSGDVFDRPLFVFDRNFLTNGSIYMNS-TGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRR-RKYRFRIINASN 300 (551)
Q Consensus 223 ~~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~-~g~~~~~~~~~~~~~~gd~~lVNG~~~P~~~v~~-~~~RlRllNas~ 300 (551)
.++..+.. +.|++|+|+||+++....+.... .|. ...++|.++|||+..+.++|++ ++|||||||+|.
T Consensus 152 ~~~p~~~~-d~e~~l~l~Dw~~~~~~~~~~~~~~g~---------~~~~~d~~liNG~~~~~~~v~~G~~yRlRliNa~~ 221 (539)
T PLN02835 152 IPIPFPLP-DGDFTLLVGDWYKTSHKTLQQRLDSGK---------VLPFPDGVLINGQTQSTFSGDQGKTYMFRISNVGL 221 (539)
T ss_pred CCcCCCCC-CceEEEEeeccccCCHHHHHHHhhcCC---------CCCCCceEEEccccCceEEECCCCEEEEEEEEcCC
Confidence 33333443 88999999999776543321110 110 1235789999999999999998 899999999999
Q ss_pred CceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCCCCCCCCCCCCCCCCCceEE
Q 008840 301 ARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVNDANGKVMK 380 (551)
Q Consensus 301 ~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~ 380 (551)
.+.+.|+| +||+|+||++||+++ +|..++.|.|++||||||+|++++.+ ++|+|+...... . . .......
T Consensus 222 ~~~~~f~i-~gH~~~VI~~DG~~v-~p~~~~~l~i~~GqRydvlv~~~~~~-g~y~i~a~~~~~---~--~--~~~~~ai 291 (539)
T PLN02835 222 STSLNFRI-QGHTMKLVEVEGSHT-IQNIYDSLDVHVGQSVAVLVTLNQSP-KDYYIVASTRFT---R--Q--ILTATAV 291 (539)
T ss_pred CccEEEEE-CCCEEEEEEECCccC-CCceeeEEEECcCceEEEEEEcCCCC-CcEEEEEEcccc---C--C--CcceEEE
Confidence 99999999 699999999999999 68899999999999999999999875 489998642111 0 0 0112333
Q ss_pred EEEccCCCCCCCCCCC--------C----------CCCCCCCCCcc-------CceeeEEeeee-cccCCCCcceEEEcc
Q 008840 381 FIILKNRETDPWRVPE--------K----------LIEYPSADLSA-------ASTTRYIAMYE-YTSNTGKPTHLLINA 434 (551)
Q Consensus 381 f~v~~~~~~~~~~lP~--------~----------L~~~~~~~~~~-------~~~~r~~~l~~-~~~~~g~~~~~~INg 434 (551)
+++.+........+|. . |.+....+.+. ....+.+.+.. .....| ...|.|||
T Consensus 292 l~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~w~iN~ 370 (539)
T PLN02835 292 LHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLING-KQRYAVNG 370 (539)
T ss_pred EEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCC-eEEEEECC
Confidence 4444321101111111 0 11110000000 01122222211 111112 35699999
Q ss_pred cccCCCCCCC--------------------cc----------------eeeeEEEEeeeeeeeeeccccCceeeeeeeec
Q 008840 435 KTLEDPVTET--------------------PK----------------TLDQTELVNLEEFKACMNKINDAIKCNLSKHA 478 (551)
Q Consensus 435 ~~f~~~~~~~--------------------~~----------------~~~~~~l~n~~~~~~~~~~~~~~~~~~v~~~~ 478 (551)
.+|..+.... +. .+.++.+.|.....|+||+|||.| .+....
T Consensus 371 ~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F--~Vlg~G 448 (539)
T PLN02835 371 VSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDF--WVVGYG 448 (539)
T ss_pred cccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccE--EEEecc
Confidence 9997532110 00 034667777777789999999955 555433
Q ss_pred cCCc-----cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEEcC
Q 008840 479 CGKK-----QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKLIK 551 (551)
Q Consensus 479 ~G~~-----~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V~~ 551 (551)
+|.- .......+-+||||.|++++++.|+|+.| ||| |+|||||++|...|||..|+|.+
T Consensus 449 ~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD--------------NPG~Wl~HCHi~~H~~~Gm~~~~~V~~ 513 (539)
T PLN02835 449 SGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD--------------NQGMWNMRSAIWERQYLGQQFYLRVWN 513 (539)
T ss_pred CCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc--------------CCEEeeeeecchhhhhcccEEEEEEcc
Confidence 4411 01122347899999999999999988877 899 99999999999999999998863
No 4
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.7e-65 Score=558.16 Aligned_cols=402 Identities=21% Similarity=0.284 Sum_probs=282.9
Q ss_pred eEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008840 65 KLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPT 144 (551)
Q Consensus 65 ~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t 144 (551)
++++.+.+.+++++. . .+.+|+|| |++|||+||+++||+|+|+++|+|++ +|
T Consensus 47 ~~~L~v~~~~~~~~G-~-~~~~~~~N-----g~~PGP~ir~~~Gd~v~v~v~N~l~~---------------------~t 98 (587)
T TIGR01480 47 EFDLTIGETMVNFTG-R-ARPAITVN-----GSIPGPLLRWREGDTVRLRVTNTLPE---------------------DT 98 (587)
T ss_pred eEEEEEEEEEEecCC-e-EEEEEEEC-----CccCCceEEEECCCEEEEEEEcCCCC---------------------Cc
Confidence 466667777777753 3 57889998 99999999999999999999999997 89
Q ss_pred EEeeCCCCCCCCCCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCCCC
Q 008840 145 VVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEAP 224 (551)
Q Consensus 145 ~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~~~ 224 (551)
+|||||+++++.+||+|+ +++|+|.||++| +|+|++. ++||||||||.. .|+..||+|+|||++++ +.+
T Consensus 99 siHwHGl~~~~~~DGvP~--vt~~~I~PG~s~---~Y~f~~~-~~GTyWYHsH~~----~q~~~GL~G~lIV~~~~-~~p 167 (587)
T TIGR01480 99 SIHWHGILLPFQMDGVPG--VSFAGIAPGETF---TYRFPVR-QSGTYWYHSHSG----FQEQAGLYGPLIIDPAE-PDP 167 (587)
T ss_pred eEEcCCCcCCccccCCCc--ccccccCCCCeE---EEEEECC-CCeeEEEecCch----hHhhccceEEEEECCCc-ccc
Confidence 999999999999999998 889999999999 9999995 899999999973 58899999999999543 333
Q ss_pred CCCCCCCcCceeEEEEEeeecCCCceEecC-----------------------CCCCC--CCCCCCC---------CccC
Q 008840 225 LRLPSGDVFDRPLFVFDRNFLTNGSIYMNS-----------------------TGNNP--SIHPQWQ---------PEYF 270 (551)
Q Consensus 225 ~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~-----------------------~g~~~--~~~~~~~---------~~~~ 270 (551)
+ .+++|++|+|+||.+....++.... .|... .....|. ....
T Consensus 168 ~----~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~ 243 (587)
T TIGR01480 168 V----RADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVN 243 (587)
T ss_pred C----CCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCccccccc
Confidence 2 2488999999999865322221000 00000 0000021 0111
Q ss_pred C--ceEEECCcccC---ceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEE
Q 008840 271 G--DVIVVNGKAWP---RMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVV 344 (551)
Q Consensus 271 g--d~~lVNG~~~P---~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVl 344 (551)
| ..++|||+..+ .+.+++ ++|||||||+|+.+.|.|+| +||+|+||++||+++ +|+.+++|.|+|||||||+
T Consensus 244 G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I-~gh~m~VIa~DG~~v-~Pv~vd~l~I~pGeRyDVl 321 (587)
T TIGR01480 244 GSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRI-PGLKLTVVAVDGQYV-HPVSVDEFRIAPAETFDVI 321 (587)
T ss_pred CccceEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEE-CCCEEEEEEcCCcCc-CceEeCeEEEcCcceeEEE
Confidence 2 24889999754 377887 89999999999999999999 599999999999999 8999999999999999999
Q ss_pred EEcCCCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCCCC--------------------------------
Q 008840 345 IDFSESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKNRETDPW-------------------------------- 392 (551)
Q Consensus 345 v~~~~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~-------------------------------- 392 (551)
|+.++. +.|.|.+...... | ..+..+.+.+......+
T Consensus 322 V~~~~~--g~~~i~a~~~~~~--~-------~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 390 (587)
T TIGR01480 322 VEPTGD--DAFTIFAQDSDRT--G-------YARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGM 390 (587)
T ss_pred EecCCC--ceEEEEEEecCCC--c-------eEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcc
Confidence 998643 3777766321000 0 00001111000000000
Q ss_pred ------------------------------------------------------CCCC---------CCCCCCC-CCCcc
Q 008840 393 ------------------------------------------------------RVPE---------KLIEYPS-ADLSA 408 (551)
Q Consensus 393 ------------------------------------------------------~lP~---------~L~~~~~-~~~~~ 408 (551)
.|.+ .|+...+ ++...
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~ 470 (587)
T TIGR01480 391 PGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRA 470 (587)
T ss_pred cccCccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCC
Confidence 0000 0000000 11112
Q ss_pred CceeeEEeeeecccCCCCcceEEEcccccCCC--CCCCcceeeeEEEEeeeeeeeeeccccCceeeeeeeeccCCccCCC
Q 008840 409 ASTTRYIAMYEYTSNTGKPTHLLINAKTLEDP--VTETPKTLDQTELVNLEEFKACMNKINDAIKCNLSKHACGKKQAVP 486 (551)
Q Consensus 409 ~~~~r~~~l~~~~~~~g~~~~~~INg~~f~~~--~~~~~~~~~~~~l~n~~~~~~~~~~~~~~~~~~v~~~~~G~~~~~~ 486 (551)
+.++.++.|.... ....|+|||+.|.+. ..-.......|.+.|.+...|+||.|+|.| .+.. .+|.
T Consensus 471 p~r~~~~~L~g~m----~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f--~v~~-~~G~----- 538 (587)
T TIGR01480 471 PGREIELHLTGNM----ERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWS--ELED-GQGE----- 538 (587)
T ss_pred CCceEEEEEcCCC----ceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCcee--eeec-CCCc-----
Confidence 3333333332211 123599999999852 111111267899999999999999999843 4422 2331
Q ss_pred CcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEEc
Q 008840 487 VHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKLI 550 (551)
Q Consensus 487 ~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V~ 550 (551)
...||||+.|.||++++|.|+++ +|| |+||||+|+|++.|||+.|+|.
T Consensus 539 --~~~~~dTv~V~Pg~t~~~~f~ad--------------~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 539 --FQVRKHTVDVPPGGKRSFRVTAD--------------ALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred --ccccCCceeeCCCCEEEEEEECC--------------CCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 23589999999999999988877 778 9999999999999999999984
No 5
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=3.5e-63 Score=543.22 Aligned_cols=415 Identities=19% Similarity=0.257 Sum_probs=288.6
Q ss_pred eEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008840 65 KLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPT 144 (551)
Q Consensus 65 ~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t 144 (551)
++++.+.+.. +.++.-...+|+|| |++|||+|++++||+|+|+++|+|+. +|
T Consensus 5 ~y~~~it~~~--~~pdG~~~~~~~~N-----G~~PGP~i~~~~GD~v~v~v~N~l~~---------------------~t 56 (539)
T TIGR03389 5 HYTFDVQEKN--VTRLCSTKSILTVN-----GKFPGPTLYAREGDTVIVNVTNNVQY---------------------NV 56 (539)
T ss_pred EEEEEEEEEE--eccCCcEeEEEEEC-----CcccCCEEEEEcCCEEEEEEEeCCCC---------------------Ce
Confidence 4555555543 33443367889998 99999999999999999999999997 89
Q ss_pred EEeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCC
Q 008840 145 VVHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVE 222 (551)
Q Consensus 145 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~ 222 (551)
+|||||+++.+. +||+|+ +|||+|+||++| +|+|++.+++||||||||.++ .++||+|+|||++++ +
T Consensus 57 siHwHGl~q~~~~~~DGv~~--vTq~pI~PG~s~---~Y~f~~~~~~GT~WYHsH~~~-----~~~Gl~G~lIV~~~~-~ 125 (539)
T TIGR03389 57 TIHWHGVRQLRNGWADGPAY--ITQCPIQPGQSY---VYNFTITGQRGTLWWHAHISW-----LRATVYGAIVILPKP-G 125 (539)
T ss_pred eEecCCCCCCCCCCCCCCcc--cccCCcCCCCeE---EEEEEecCCCeeEEEecCchh-----hhccceEEEEEcCCC-C
Confidence 999999998776 899998 999999999999 999998669999999999953 247999999999766 4
Q ss_pred CCCCCCCCCcCceeEEEEEeeecCCCceEec--CCCCCCCCCCCCCCccCCceEEECCcccC----------ceeecC-e
Q 008840 223 APLRLPSGDVFDRPLFVFDRNFLTNGSIYMN--STGNNPSIHPQWQPEYFGDVIVVNGKAWP----------RMTVRR-R 289 (551)
Q Consensus 223 ~~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~--~~g~~~~~~~~~~~~~~gd~~lVNG~~~P----------~~~v~~-~ 289 (551)
.++.++.. ++|++|+|+||+......+... ..|. ...++|.++|||+..+ .++|++ +
T Consensus 126 ~~~~~~~~-d~e~~l~l~Dw~~~~~~~~~~~~~~~~~---------~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~ 195 (539)
T TIGR03389 126 VPYPFPKP-DREVPIILGEWWNADVEAVINQANQTGG---------APNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGK 195 (539)
T ss_pred CCCCCCCC-CceEEEEecccccCCHHHHHHHHHhcCC---------CCCccceEEECCCcCCCCCCCCCCceEEEECCCC
Confidence 44444443 7899999999965433222110 0111 1124689999999753 588988 8
Q ss_pred EEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCCCCCCCCCC
Q 008840 290 KYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGN 369 (551)
Q Consensus 290 ~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~~~~~~~g~ 369 (551)
+|||||||+|..+.+.|+| +||+|+||++||.++ +|+.+++|.|++||||||+|++++.+ ++|+|+...... +.
T Consensus 196 ~~RlRlINa~~~~~~~~~i-dgH~~~VIa~DG~~~-~P~~~~~l~i~~GqRydVlv~a~~~~-g~y~i~~~~~~~---~~ 269 (539)
T TIGR03389 196 TYLLRIINAALNDELFFAI-ANHTLTVVEVDATYT-KPFKTKTIVIGPGQTTNVLLTADQSP-GRYFMAARPYMD---AP 269 (539)
T ss_pred EEEEEEEeccCCceEEEEE-CCCeEEEEEeCCccc-CceEeCeEEecCCCEEEEEEECCCCC-ceEEEEEecccc---Cc
Confidence 9999999999999999999 699999999999999 89999999999999999999998866 489998753211 10
Q ss_pred CCCCCCCceEEEEEccCCCCC-C--CCCC------------CCCCCC-----CCCCCccCceeeEEeeeecc--------
Q 008840 370 PVNDANGKVMKFIILKNRETD-P--WRVP------------EKLIEY-----PSADLSAASTTRYIAMYEYT-------- 421 (551)
Q Consensus 370 ~~~~~~~~vm~f~v~~~~~~~-~--~~lP------------~~L~~~-----~~~~~~~~~~~r~~~l~~~~-------- 421 (551)
...........+++.+..... + ...| ..|.++ +......+..+..+.+....
T Consensus 270 ~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 349 (539)
T TIGR03389 270 GAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTC 349 (539)
T ss_pred cCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCccccc
Confidence 001112235556665432111 0 0011 012211 11101122222222332100
Q ss_pred -cCCCCcceEEEcccccCCCCC--------------------CCc---------------------------ceeeeEEE
Q 008840 422 -SNTGKPTHLLINAKTLEDPVT--------------------ETP---------------------------KTLDQTEL 453 (551)
Q Consensus 422 -~~~g~~~~~~INg~~f~~~~~--------------------~~~---------------------------~~~~~~~l 453 (551)
...+....|.|||.+|..+.. ..| ..+.++.+
T Consensus 350 ~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi 429 (539)
T TIGR03389 350 QGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVL 429 (539)
T ss_pred ccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEE
Confidence 111233468999988642110 000 01334455
Q ss_pred Eeee---eeeeeeccccCceeeeeeeeccCCc------cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCC
Q 008840 454 VNLE---EFKACMNKINDAIKCNLSKHACGKK------QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDAT 524 (551)
Q Consensus 454 ~n~~---~~~~~~~~~~~~~~~~v~~~~~G~~------~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~ 524 (551)
.|.. ...|+||+|||.| .+.....|.- .......+..||||.|++++++.|+++.+
T Consensus 430 ~n~~~~~~~~HP~HLHGh~F--~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~ad------------- 494 (539)
T TIGR03389 430 QDTSILGSENHPIHLHGYNF--FVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVAD------------- 494 (539)
T ss_pred ecCCcCCCCCCcEeEcCCce--EEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecC-------------
Confidence 5653 2379999999955 5554333420 01122456789999999999999977776
Q ss_pred CCCc-eEEeeccccccccCcccceEEc
Q 008840 525 AEPG-YVYHCHILDHEDNIMMRPLKLI 550 (551)
Q Consensus 525 ~~pg-~~~HCHiL~HED~GMM~~~~V~ 550 (551)
||| |++||||.+|...|||..|.+.
T Consensus 495 -NPG~W~~HCHi~~H~~~Gm~~~~~~~ 520 (539)
T TIGR03389 495 -NPGVWFMHCHLEVHTTWGLKMAFLVD 520 (539)
T ss_pred -CCeEEEEEecccchhhhcceEEEEEc
Confidence 899 9999999999999999999763
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=7.6e-63 Score=537.48 Aligned_cols=410 Identities=15% Similarity=0.147 Sum_probs=288.3
Q ss_pred eEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008840 65 KLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPT 144 (551)
Q Consensus 65 ~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t 144 (551)
++++.+...... ++.-...+|+|| |++|||+||+++||+|+|+++|+|++ +|
T Consensus 29 ~y~~~v~~~~~~--pdG~~r~~~~iN-----Gq~PGP~I~~~~GD~v~V~v~N~l~~---------------------~t 80 (552)
T PLN02354 29 FFTWNVTYGTAS--PLGVPQQVILIN-----GQFPGPNINSTSNNNIVINVFNNLDE---------------------PF 80 (552)
T ss_pred EEEEEEEEEEec--CCCeEEEEEEEC-----CCCcCCcEEEeCCCEEEEEEEECCCC---------------------Cc
Confidence 345445454333 333367889998 99999999999999999999999987 89
Q ss_pred EEeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCC
Q 008840 145 VVHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVE 222 (551)
Q Consensus 145 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~ 222 (551)
+|||||+++... +||+|+ |||+|+||++| +|+|++.+++||||||+|.. .|+.+||+|+|||++++ +
T Consensus 81 tiHWHGi~q~~~~~~DGv~~---TQcpI~PG~sf---~Y~F~~~~q~GT~WYHsH~~----~Q~~~Gl~G~lII~~~~-~ 149 (552)
T PLN02354 81 LLTWSGIQQRKNSWQDGVPG---TNCPIPPGTNF---TYHFQPKDQIGSYFYYPSTG----MHRAAGGFGGLRVNSRL-L 149 (552)
T ss_pred ccccccccCCCCcccCCCcC---CcCCCCCCCcE---EEEEEeCCCCcceEEecCcc----ceecCCccceEEEcCCc-C
Confidence 999999998765 999984 89999999999 99999866899999999973 58999999999999765 3
Q ss_pred CCCCCCCCCcCceeEEEEEeeecCCCceEec-CCCCCCCCCCCCCCccCCceEEECCcc-------cCceeecC-eEEEE
Q 008840 223 APLRLPSGDVFDRPLFVFDRNFLTNGSIYMN-STGNNPSIHPQWQPEYFGDVIVVNGKA-------WPRMTVRR-RKYRF 293 (551)
Q Consensus 223 ~~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~-~~g~~~~~~~~~~~~~~gd~~lVNG~~-------~P~~~v~~-~~~Rl 293 (551)
.+.+.... +.|++|+|+||+.+....+... ..|.. ....|.+||||+. .+.++|++ ++|||
T Consensus 150 ~~~p~~~~-d~e~~l~l~Dw~~~~~~~~~~~~~~g~~---------~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRl 219 (552)
T PLN02354 150 IPVPYADP-EDDYTVLIGDWYTKSHTALKKFLDSGRT---------LGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRY 219 (552)
T ss_pred CCCCCCCc-CceEEEEeeeeccCCHHHHHHHHhcCCC---------CCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEE
Confidence 33333222 6799999999977654432110 01110 1125899999996 47889998 89999
Q ss_pred EEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCCCCCCCCCCCCCC
Q 008840 294 RIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVND 373 (551)
Q Consensus 294 RllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~~~~~~~g~~~~~ 373 (551)
||||+|..+.+.|+| +||+|+||++||.++ +|..++.|.|++||||||+|++++.+| +|+|+...... +.
T Consensus 220 RiINa~~~~~~~f~I-dgH~~tVIa~DG~~v-~p~~~~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~---~~---- 289 (552)
T PLN02354 220 RICNVGLKSSLNFRI-QGHKMKLVEMEGSHV-LQNDYDSLDVHVGQCFSVLVTANQAPK-DYYMVASTRFL---KK---- 289 (552)
T ss_pred EEEecCCCceEEEEE-CCceEEEEEeCCccc-CCcceeEEEEccCceEEEEEECCCCCC-cEEEEEecccc---CC----
Confidence 999999999999999 699999999999999 789999999999999999999998764 89998753211 10
Q ss_pred CCCceEEEEEccCCCCCCCCCCC-----------------CCCCCCCCCCc-------cCceeeEEeeeecc-cCCCCcc
Q 008840 374 ANGKVMKFIILKNRETDPWRVPE-----------------KLIEYPSADLS-------AASTTRYIAMYEYT-SNTGKPT 428 (551)
Q Consensus 374 ~~~~vm~f~v~~~~~~~~~~lP~-----------------~L~~~~~~~~~-------~~~~~r~~~l~~~~-~~~g~~~ 428 (551)
.......+++.+.........|. .|.+....+.+ .....+.+.+.... ...| ..
T Consensus 290 ~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~ 368 (552)
T PLN02354 290 VLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDG-KL 368 (552)
T ss_pred CccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCc-eE
Confidence 11123344554432111011111 01111100000 01122333332211 1112 34
Q ss_pred eEEEcccccCCCCCCC-----------------------------cc----------eeeeEEEEeeeeeeeeeccccCc
Q 008840 429 HLLINAKTLEDPVTET-----------------------------PK----------TLDQTELVNLEEFKACMNKINDA 469 (551)
Q Consensus 429 ~~~INg~~f~~~~~~~-----------------------------~~----------~~~~~~l~n~~~~~~~~~~~~~~ 469 (551)
.|.|||.+|..+.+.. .. .+.++.|.|.....|+||+|||.
T Consensus 369 ~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~ 448 (552)
T PLN02354 369 RYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYS 448 (552)
T ss_pred EEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCcc
Confidence 6899999886331110 00 13445566665668999999995
Q ss_pred eeeeeeeeccCCc-----cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCc
Q 008840 470 IKCNLSKHACGKK-----QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIM 543 (551)
Q Consensus 470 ~~~~v~~~~~G~~-----~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GM 543 (551)
| .+.....|.- .......+-.||||.|++++++.|+|+.| ||| |+|||||..|...||
T Consensus 449 F--~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aD--------------NPGvW~~HCHi~~H~~~g~ 512 (552)
T PLN02354 449 F--FAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFD--------------NAGMWNIRSENWERRYLGQ 512 (552)
T ss_pred E--EEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEec--------------CCeEEeeeccccccccccc
Confidence 5 4554444421 11122457899999999999999988887 999 999999999999999
Q ss_pred ccceEEc
Q 008840 544 MRPLKLI 550 (551)
Q Consensus 544 M~~~~V~ 550 (551)
-..|.|+
T Consensus 513 ~l~~~v~ 519 (552)
T PLN02354 513 QLYASVL 519 (552)
T ss_pred eEEEEEe
Confidence 9888775
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=9.2e-62 Score=526.95 Aligned_cols=411 Identities=16% Similarity=0.142 Sum_probs=287.0
Q ss_pred eEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008840 65 KLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPT 144 (551)
Q Consensus 65 ~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t 144 (551)
++++.+.... ..++.-...+|+|| |++|||+||+++||+|+|+++|+|++ +|
T Consensus 28 ~~~~~vt~~~--~~pdG~~~~~~~vN-----G~~PGP~I~~~~GD~v~V~v~N~L~~---------------------~t 79 (545)
T PLN02168 28 SYQWVVSYSQ--RFILGGNKQVIVIN-----DMFPGPLLNATANDVINVNIFNNLTE---------------------PF 79 (545)
T ss_pred EEEEEEEEEE--ecCCCeEEEEEEEC-----CcCCCCcEEEECCCEEEEEEEeCCCC---------------------Cc
Confidence 3455444543 33344467889998 99999999999999999999999997 89
Q ss_pred EEeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCC
Q 008840 145 VVHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVE 222 (551)
Q Consensus 145 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~ 222 (551)
+|||||+++.+. +||+|+ +||+|+||++| +|+|++.+++||||||+|.. .|+.+||+|+|||++++ +
T Consensus 80 tiHWHGl~~~~~~~~DGv~g---tQcpI~PG~sf---tY~F~~~~q~GT~WYHsH~~----~Q~~~GL~G~lII~~~~-~ 148 (545)
T PLN02168 80 LMTWNGLQLRKNSWQDGVRG---TNCPILPGTNW---TYRFQVKDQIGSYFYFPSLL----LQKAAGGYGAIRIYNPE-L 148 (545)
T ss_pred cEeeCCccCCCCCCcCCCCC---CcCCCCCCCcE---EEEEEeCCCCceEEEecChh----hhhhCcceeEEEEcCCc-c
Confidence 999999999877 999985 89999999999 99999966899999999974 58999999999999776 4
Q ss_pred CCCCCCCCCcCceeEEEEEeeecCCCceEecC-CCCCCCCCCCCCCccCCceEEECCcc--cCceeecC-eEEEEEEEec
Q 008840 223 APLRLPSGDVFDRPLFVFDRNFLTNGSIYMNS-TGNNPSIHPQWQPEYFGDVIVVNGKA--WPRMTVRR-RKYRFRIINA 298 (551)
Q Consensus 223 ~~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~-~g~~~~~~~~~~~~~~gd~~lVNG~~--~P~~~v~~-~~~RlRllNa 298 (551)
++..++.. +.|++|+|+||.+.....+.... .|. ....+|.+||||+. .+.++|++ ++|||||+|+
T Consensus 149 ~~~p~~~~-d~e~~l~l~Dw~~~~~~~~~~~~~~g~---------~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa 218 (545)
T PLN02168 149 VPVPFPKP-DEEYDILIGDWFYADHTVMRASLDNGH---------SLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNV 218 (545)
T ss_pred cCcCcCcc-cceeeEEEEecCCCCHHHHHhhhhcCC---------CCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEec
Confidence 44444443 78999999999765332221110 010 01247899999995 67899988 8999999999
Q ss_pred CCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCC-C--ceEEEecCCCCCCCCCCCCCCCC
Q 008840 299 SNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSEST-S--DVAILANDAPYPYPAGNPVNDAN 375 (551)
Q Consensus 299 s~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~-g--~~~~L~~~~~~~~~~g~~~~~~~ 375 (551)
|..+.+.|+| +||+|+||++||.++ +|..++.|.|++||||||+|++++.+ | +.|+|+...... . . ..
T Consensus 219 ~~~~~~~~~I-dgH~~tVIa~DG~~v-~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~----~-~--~~ 289 (545)
T PLN02168 219 GLKTCLNFRI-QDHDMLLVETEGTYV-QKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFT----D-A--YL 289 (545)
T ss_pred cCCceEEEEE-CCcEEEEEEECCeEC-CCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEeccc----C-C--Cc
Confidence 9999999999 699999999999999 68899999999999999999998654 4 489998764211 0 0 11
Q ss_pred CceEEEEEccCCCCC--C-CCCCC----------------CCCCCCCCCCcc-------CceeeEEeeeecccCCCCcce
Q 008840 376 GKVMKFIILKNRETD--P-WRVPE----------------KLIEYPSADLSA-------ASTTRYIAMYEYTSNTGKPTH 429 (551)
Q Consensus 376 ~~vm~f~v~~~~~~~--~-~~lP~----------------~L~~~~~~~~~~-------~~~~r~~~l~~~~~~~g~~~~ 429 (551)
.....+++.+..... + +..|. .|.|..+.+.+. ....+.+.+........+...
T Consensus 290 ~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 369 (545)
T PLN02168 290 GGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLR 369 (545)
T ss_pred ceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEE
Confidence 123445554432110 0 00111 111100111110 011222222210000111346
Q ss_pred EEEcccccCCCCCCC-----------------cc-------------------eeeeEEEEeeeeeeeeeccccCceeee
Q 008840 430 LLINAKTLEDPVTET-----------------PK-------------------TLDQTELVNLEEFKACMNKINDAIKCN 473 (551)
Q Consensus 430 ~~INg~~f~~~~~~~-----------------~~-------------------~~~~~~l~n~~~~~~~~~~~~~~~~~~ 473 (551)
|.|||.+|..+.+.. +. .+.++.+.|.....|+||+|||.| .
T Consensus 370 ~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F--~ 447 (545)
T PLN02168 370 YTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNF--F 447 (545)
T ss_pred EEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCce--E
Confidence 899999997432111 00 033455655555579999999954 5
Q ss_pred eeeeccCCcc-----CCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccce
Q 008840 474 LSKHACGKKQ-----AVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPL 547 (551)
Q Consensus 474 v~~~~~G~~~-----~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~ 547 (551)
+.....|.-. ......+-.||||.|++++.+.|+|+.| ||| |++||||..|-..||...|
T Consensus 448 Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD--------------NPG~Wl~HCHi~~~~h~g~gl~~ 513 (545)
T PLN02168 448 VVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMD--------------NQGMWNVRSQKAEQWYLGQELYM 513 (545)
T ss_pred EEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEcc--------------CCeEEeeeecCcccceecCcEEE
Confidence 5543333210 1123567899999999999999977776 999 9999999888888777777
Q ss_pred EE
Q 008840 548 KL 549 (551)
Q Consensus 548 ~V 549 (551)
+|
T Consensus 514 ~v 515 (545)
T PLN02168 514 RV 515 (545)
T ss_pred EE
Confidence 66
No 8
>PLN02991 oxidoreductase
Probab=100.00 E-value=2e-61 Score=523.49 Aligned_cols=410 Identities=14% Similarity=0.139 Sum_probs=286.7
Q ss_pred EEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeE
Q 008840 66 LEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTV 145 (551)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~ 145 (551)
+++.+.... ..++.-...+|+|| |++|||+|++++||+|+|+++|+|++ +|+
T Consensus 31 ~~~~vt~~~--~~pdG~~r~~~~vN-----G~~PGP~I~~~~GD~v~V~V~N~L~~---------------------~tt 82 (543)
T PLN02991 31 FEWHVTYGN--ISPLGVAQQGILIN-----GKFPGPDIISVTNDNLIINVFNHLDE---------------------PFL 82 (543)
T ss_pred EEEEEEEEE--eCCCCEEEEEEEEc-----CCCCCCcEEEECCCEEEEEecCCCCC---------------------Ccc
Confidence 344344443 33444367889998 99999999999999999999999987 899
Q ss_pred EeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCCC
Q 008840 146 VHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEA 223 (551)
Q Consensus 146 iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~~ 223 (551)
|||||+++.+. +||+|+ +||+|+||++| +|+|++.+++||||||+|.. .|..+||+|+|||++++ ++
T Consensus 83 iHWHGi~q~~~~~~DGv~~---tQcpI~PG~sf---tY~F~~~~q~GT~WYHsH~~----~q~~~Gl~G~lIV~~~~-~~ 151 (543)
T PLN02991 83 ISWSGIRNWRNSYQDGVYG---TTCPIPPGKNY---TYALQVKDQIGSFYYFPSLG----FHKAAGGFGAIRISSRP-LI 151 (543)
T ss_pred EEECCcccCCCccccCCCC---CCCccCCCCcE---EEEEEeCCCCcceEEecCcc----hhhhCCCeeeEEEeCCc-cc
Confidence 99999998654 999974 79999999999 99999966899999999984 36789999999999765 33
Q ss_pred CCCCCCCCcCceeEEEEEeeecCCCceEecC-CCCCCCCCCCCCCccCCceEEECCccc-CceeecC-eEEEEEEEecCC
Q 008840 224 PLRLPSGDVFDRPLFVFDRNFLTNGSIYMNS-TGNNPSIHPQWQPEYFGDVIVVNGKAW-PRMTVRR-RKYRFRIINASN 300 (551)
Q Consensus 224 ~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~-~g~~~~~~~~~~~~~~gd~~lVNG~~~-P~~~v~~-~~~RlRllNas~ 300 (551)
+...+. +++|++|+|+||+++....+.... .+. ....+|.++|||+.. +.++|++ ++|||||||+|.
T Consensus 152 ~~p~~~-~d~d~~i~l~DW~~~~~~~~~~~~~~~~---------~~~~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~ 221 (543)
T PLN02991 152 PVPFPA-PADDYTVLIGDWYKTNHKDLRAQLDNGG---------KLPLPDGILINGRGSGATLNIEPGKTYRLRISNVGL 221 (543)
T ss_pred Cccccc-ccceeEEEecceecCCHHHHHHHhhcCC---------CCCCCCEEEEccCCCCceEEECCCCEEEEEEEeccC
Confidence 433333 378999999999876543321111 110 123578999999964 7799998 899999999999
Q ss_pred CceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCCCCCCCCCCCCCCCCCceEE
Q 008840 301 ARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVNDANGKVMK 380 (551)
Q Consensus 301 ~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~ 380 (551)
.+.+.|+| +||+|+||++||.++ +|..++.|.|++||||||+|++++.+| +|+++...... + . .......
T Consensus 222 ~~~~~~~i-dgH~~tVIa~DG~~~-~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~---~--~--~~~~~AI 291 (543)
T PLN02991 222 QNSLNFRI-QNHTMKLVEVEGTHT-IQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFT---S--K--ILITTGV 291 (543)
T ss_pred CeeEEEEE-CCCEEEEEEeCCccc-cceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccC---C--C--CcceEEE
Confidence 99999999 699999999999998 799999999999999999999999764 78888653211 1 0 0112333
Q ss_pred EEEccCCCCCCCCCCC-----------------CCCCCCCCCCccC-------ceeeEEeeee-cccCCCCcceEEEccc
Q 008840 381 FIILKNRETDPWRVPE-----------------KLIEYPSADLSAA-------STTRYIAMYE-YTSNTGKPTHLLINAK 435 (551)
Q Consensus 381 f~v~~~~~~~~~~lP~-----------------~L~~~~~~~~~~~-------~~~r~~~l~~-~~~~~g~~~~~~INg~ 435 (551)
+++.+........+|. .|.+....+.+.. ...+.+.+.. .....| ...|.|||.
T Consensus 292 l~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~iN~~ 370 (543)
T PLN02991 292 LHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEG-KQRYAVNSA 370 (543)
T ss_pred EEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCc-eEEEEECCC
Confidence 4554432110001111 1111111111110 1122222211 000112 346899999
Q ss_pred ccCCCCCCC--------------------c------c----------eeeeEEEEeeeeeeeeeccccCceeeeeeeecc
Q 008840 436 TLEDPVTET--------------------P------K----------TLDQTELVNLEEFKACMNKINDAIKCNLSKHAC 479 (551)
Q Consensus 436 ~f~~~~~~~--------------------~------~----------~~~~~~l~n~~~~~~~~~~~~~~~~~~v~~~~~ 479 (551)
+|..+.+.. + . .+.++.|-|.....|+||+|||.| .+.....
T Consensus 371 s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F--~Vvg~G~ 448 (543)
T PLN02991 371 SFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSF--YVVGMEL 448 (543)
T ss_pred ccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcce--EEEEeCC
Confidence 987431111 0 0 034455556556689999999965 4444333
Q ss_pred CCc-----cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEEcC
Q 008840 480 GKK-----QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKLIK 551 (551)
Q Consensus 480 G~~-----~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V~~ 551 (551)
|.- .......+-.||||.|++++++.|+|+++ ||| |++||||..|.-.||...++|.+
T Consensus 449 G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD--------------NPG~W~~HCHi~~h~~~gm~~~~~v~~ 512 (543)
T PLN02991 449 GKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD--------------NVGMWNLRSELWERQYLGQQFYMRVYT 512 (543)
T ss_pred CCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC--------------CCEEeeeeeCccccccccEEEEEEecC
Confidence 321 11123457899999999999999988877 999 99999999999999998887753
No 9
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.6e-60 Score=519.16 Aligned_cols=418 Identities=17% Similarity=0.172 Sum_probs=284.2
Q ss_pred eEEEEEEEEEEeecCCC--CCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008840 65 KLEIGMFEKKWKFHRDL--PPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGV 142 (551)
Q Consensus 65 ~~~i~~~~~~~~~~~~~--~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~ 142 (551)
++++.+... .+.++. ....+|+|| |++|||+|++++||+|+|+++|+|++
T Consensus 29 ~y~~~v~~~--~~~pdg~~~~~~vi~vN-----Gq~PGPtI~~~~GD~v~V~V~N~L~~--------------------- 80 (596)
T PLN00044 29 YYDWEVSYV--SAAPLGGVKKQEAIGIN-----GQFPGPALNVTTNWNLVVNVRNALDE--------------------- 80 (596)
T ss_pred EEEEEEEEE--EEccCCCceeeEEEEEc-----CcCCCCcEEEECCCEEEEEEEeCCCC---------------------
Confidence 345444444 333443 235789997 99999999999999999999999997
Q ss_pred CeEEeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCC
Q 008840 143 PTVVHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPD 220 (551)
Q Consensus 143 ~t~iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~ 220 (551)
+|+|||||+++... +||++. +||+|+||++| +|+|.+.+++||||||+|.. .|+.+||+|+|||++++
T Consensus 81 ~ttIHWHGl~q~~t~w~DGv~~---TQcPI~PG~sf---tY~F~~~dq~GT~WYHsH~~----~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 81 PLLLTWHGVQQRKSAWQDGVGG---TNCAIPAGWNW---TYQFQVKDQVGSFFYAPSTA----LHRAAGGYGAITINNRD 150 (596)
T ss_pred CccEEECCccCCCCccccCCCC---CcCCcCCCCcE---EEEEEeCCCCceeEeeccch----hhhhCcCeeEEEEcCcc
Confidence 89999999998754 999863 89999999999 99999966899999999973 68999999999999765
Q ss_pred CCCCCCCCCCCcCceeEEEEEeeecCCCceEec-CCCCCCCCCCCCCCccCCceEEECCc--------------ccCcee
Q 008840 221 VEAPLRLPSGDVFDRPLFVFDRNFLTNGSIYMN-STGNNPSIHPQWQPEYFGDVIVVNGK--------------AWPRMT 285 (551)
Q Consensus 221 ~~~~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~-~~g~~~~~~~~~~~~~~gd~~lVNG~--------------~~P~~~ 285 (551)
..+..++...++|.+|+|+||+......+... ..|.. ....|.++|||+ ..+.++
T Consensus 151 -~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~~---------~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~ 220 (596)
T PLN00044 151 -VIPIPFGFPDGGDITLFIADWYARDHRALRRALDAGDL---------LGAPDGVLINAFGPYQYNDSLVPPGITYERIN 220 (596)
T ss_pred -cccccccCCcccceEEEecccccCCHHHHHHHHhcCCC---------CCCCCceEEcccCccccCCccccCCCccceEE
Confidence 33333222224799999999976543332110 11110 012466777775 234688
Q ss_pred ecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCCCCC
Q 008840 286 VRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYP 364 (551)
Q Consensus 286 v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~~~~ 364 (551)
|++ ++|||||||+|..+.+.|+| +||+|+||++||.++ +|+.++.|.|++||||||+|++++.++++|+|+......
T Consensus 221 V~~Gk~yRlRiINaa~~~~~~fsI-dgH~mtVIa~DG~~v-~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~ 298 (596)
T PLN00044 221 VDPGKTYRFRVHNVGVATSLNFRI-QGHNLLLVEAEGSYT-SQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFV 298 (596)
T ss_pred ECCCCEEEEEEEEccCCceEEEEE-CCCEEEEEEeCCccc-CceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccc
Confidence 998 89999999999999999999 699999999999999 899999999999999999999999866589998643111
Q ss_pred CCCCCCCCCCCCceEEEEEccCCCC--CC-CCCCC-------------CCCCCCC----CCCccCceee-EEeee-----
Q 008840 365 YPAGNPVNDANGKVMKFIILKNRET--DP-WRVPE-------------KLIEYPS----ADLSAASTTR-YIAMY----- 418 (551)
Q Consensus 365 ~~~g~~~~~~~~~vm~f~v~~~~~~--~~-~~lP~-------------~L~~~~~----~~~~~~~~~r-~~~l~----- 418 (551)
.. +. .........+++.+.... .+ +..|. .++..+. .+.++...+. .+.+.
T Consensus 299 ~~-~~--~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 375 (596)
T PLN00044 299 DA-AV--VDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLL 375 (596)
T ss_pred cC-cc--ccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeee
Confidence 00 10 111122344555443210 10 11121 1110000 0011110111 11111
Q ss_pred -ecccCC-CCcceEEEcccccCCCCCCC----------------cc-------------------eeeeEEEEeeeeeee
Q 008840 419 -EYTSNT-GKPTHLLINAKTLEDPVTET----------------PK-------------------TLDQTELVNLEEFKA 461 (551)
Q Consensus 419 -~~~~~~-g~~~~~~INg~~f~~~~~~~----------------~~-------------------~~~~~~l~n~~~~~~ 461 (551)
...... .+...|+|||.+|..+.+.. |. .++++.+-|.....|
T Consensus 376 ~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~H 455 (596)
T PLN00044 376 QSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQ 455 (596)
T ss_pred ccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCCCC
Confidence 000000 11356899999987532111 00 034445555445579
Q ss_pred eeccccCceeeeeeeeccCCc-----cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeecc
Q 008840 462 CMNKINDAIKCNLSKHACGKK-----QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHI 535 (551)
Q Consensus 462 ~~~~~~~~~~~~v~~~~~G~~-----~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHi 535 (551)
+||+|||.| -|.....|.- ......++-.||||.|++|+++.|+|+.| ||| |.+||||
T Consensus 456 P~HLHGh~F--~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aD--------------NPG~W~lHCH~ 519 (596)
T PLN00044 456 SYHLDGYAF--FVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLD--------------NAGIWNLRVEN 519 (596)
T ss_pred CeeEcCccE--EEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecC--------------CCEEehhhccC
Confidence 999999965 3444333421 11234557899999999999999988776 999 9999999
Q ss_pred ccccccCcccceEEcC
Q 008840 536 LDHEDNIMMRPLKLIK 551 (551)
Q Consensus 536 L~HED~GMM~~~~V~~ 551 (551)
++|...||...|.|.+
T Consensus 520 ~~h~~~Gm~~~~~v~~ 535 (596)
T PLN00044 520 LDAWYLGQEVYINVVN 535 (596)
T ss_pred chhhcccCcEEEEEec
Confidence 9999999999998753
No 10
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.1e-60 Score=516.10 Aligned_cols=413 Identities=14% Similarity=0.145 Sum_probs=288.6
Q ss_pred eEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008840 65 KLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPT 144 (551)
Q Consensus 65 ~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t 144 (551)
++++.+...... ++.-...+|+|| |++|||+|++++||+|+|+++|+|++ +|
T Consensus 18 ~~~~~vt~~~~~--pdg~~~~~~~vN-----Gq~PGP~I~~~~GD~v~V~v~N~L~~---------------------~t 69 (536)
T PLN02792 18 FYNWRVTYGNIS--LLTLPRRGILIN-----GQFPGPEIRSLTNDNLVINVHNDLDE---------------------PF 69 (536)
T ss_pred EEEEEEEEEEeC--CCCeEEEEEEEC-----CCCCCCcEEEECCCEEEEEEEeCCCC---------------------Cc
Confidence 445544454333 333357889998 99999999999999999999999997 89
Q ss_pred EEeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCC
Q 008840 145 VVHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVE 222 (551)
Q Consensus 145 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~ 222 (551)
+|||||+++... +||++. +||+|+||++| +|+|++.+++||||||+|.. .|..+||+|++||++++ +
T Consensus 70 tiHWHGl~q~~~~~~DGv~~---tqcPI~PG~sf---tY~F~~~~q~GT~WYHsH~~----~q~~~Gl~G~liI~~~~-~ 138 (536)
T PLN02792 70 LLSWNGVHMRKNSYQDGVYG---TTCPIPPGKNY---TYDFQVKDQVGSYFYFPSLA----VQKAAGGYGSLRIYSLP-R 138 (536)
T ss_pred CEeCCCcccCCCCccCCCCC---CcCccCCCCcE---EEEEEeCCCccceEEecCcc----hhhhcccccceEEeCCc-c
Confidence 999999999876 999864 78999999999 99999966899999999973 58899999999998644 3
Q ss_pred CCCCCCCCCcCceeEEEEEeeecCCCceEec-CCCCCCCCCCCCCCccCCceEEECCcc---cCceeecC-eEEEEEEEe
Q 008840 223 APLRLPSGDVFDRPLFVFDRNFLTNGSIYMN-STGNNPSIHPQWQPEYFGDVIVVNGKA---WPRMTVRR-RKYRFRIIN 297 (551)
Q Consensus 223 ~~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~-~~g~~~~~~~~~~~~~~gd~~lVNG~~---~P~~~v~~-~~~RlRllN 297 (551)
.+..++. ++.|++|+|+||+.+..+.+... ..|. .....+|.+||||+. .+.++|++ ++|||||+|
T Consensus 139 ~~~p~~~-~d~e~~i~l~Dw~~~~~~~~~~~~~~g~--------~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliN 209 (536)
T PLN02792 139 IPVPFPE-PAGDFTFLIGDWYRRNHTTLKKILDGGR--------KLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISN 209 (536)
T ss_pred cCcCCCc-ccceeEEEecccccCCHHHHHHHhhccC--------cCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEE
Confidence 3343444 37799999999987654443211 1111 112357999999995 46689988 899999999
Q ss_pred cCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCCCCCCCCCCCCCCCCCc
Q 008840 298 ASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVNDANGK 377 (551)
Q Consensus 298 as~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~~~~~~~g~~~~~~~~~ 377 (551)
+|..+.+.|+| +||+|+||++||+++ +|..++.|.|+|||||||+|++++.+ ++|+|+...... +. . ...
T Consensus 210 a~~~~~~~f~i-~gH~~tVI~~DG~~v-~p~~~~~l~i~~GqRydVlV~a~~~~-g~Y~i~a~~~~~---~~--~--~~~ 279 (536)
T PLN02792 210 VGLQTSLNFEI-LGHQLKLIEVEGTHT-VQSMYTSLDIHVGQTYSVLVTMDQPP-QNYSIVVSTRFI---AA--K--VLV 279 (536)
T ss_pred cCCCceEEEEE-CCcEEEEEEeCCccC-CCcceeEEEEccCceEEEEEEcCCCC-ceEEEEEEeccC---CC--C--Cce
Confidence 99999999999 699999999999999 78889999999999999999999865 489988764211 10 1 112
Q ss_pred eEEEEEccCCCCCC--CCCCC----------------CCCCCCCCCCccC-------ceeeEEeeeecccCCCCcceEEE
Q 008840 378 VMKFIILKNRETDP--WRVPE----------------KLIEYPSADLSAA-------STTRYIAMYEYTSNTGKPTHLLI 432 (551)
Q Consensus 378 vm~f~v~~~~~~~~--~~lP~----------------~L~~~~~~~~~~~-------~~~r~~~l~~~~~~~g~~~~~~I 432 (551)
...+++.+.....+ +.+|. .|.+..+.+.++. ...+.+.+.......+....|.|
T Consensus 280 ~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 359 (536)
T PLN02792 280 SSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAI 359 (536)
T ss_pred EEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEE
Confidence 33445544321100 11110 0110000011100 01122222111011112346889
Q ss_pred cccccCCCCCCC-----------------cc--------------------eeeeEEEEeeeeeeeeeccccCceeeeee
Q 008840 433 NAKTLEDPVTET-----------------PK--------------------TLDQTELVNLEEFKACMNKINDAIKCNLS 475 (551)
Q Consensus 433 Ng~~f~~~~~~~-----------------~~--------------------~~~~~~l~n~~~~~~~~~~~~~~~~~~v~ 475 (551)
||.+|..+.+.. +. .+.+..|-|.....|+||+|||.| .+.
T Consensus 360 N~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F--~Vv 437 (536)
T PLN02792 360 NGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNF--WVV 437 (536)
T ss_pred CCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCce--EEE
Confidence 999887421100 00 034455555555679999999955 454
Q ss_pred eeccCCc-----cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 476 KHACGKK-----QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 476 ~~~~G~~-----~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
....|.- .......+-.||||.|++++++.|+|+.| ||| |++||||..|...||...|.|
T Consensus 438 g~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aD--------------NPGvW~~HCh~~~h~~~Gm~~~~~v 503 (536)
T PLN02792 438 GINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALD--------------NVGMWNLRSQFWARQYLGQQFYLRV 503 (536)
T ss_pred eecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEee--------------CCEEEeeeEcchhccccceEEEEEE
Confidence 4333321 11123457899999999999999988887 999 999999999999999999987
Q ss_pred cC
Q 008840 550 IK 551 (551)
Q Consensus 550 ~~ 551 (551)
.+
T Consensus 504 ~~ 505 (536)
T PLN02792 504 YS 505 (536)
T ss_pred cc
Confidence 53
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.1e-60 Score=520.98 Aligned_cols=412 Identities=21% Similarity=0.237 Sum_probs=280.3
Q ss_pred EEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeE
Q 008840 66 LEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTV 145 (551)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~ 145 (551)
+++.+.+. ...++.....+|+|| |++|||+|++++||+|+|+++|+|... +|+
T Consensus 4 y~~~vt~~--~~~pdG~~~~~~~~N-----g~~pGP~i~~~~Gd~v~v~v~N~l~~~--------------------~t~ 56 (541)
T TIGR03388 4 YKWEVEYE--FWSPDCFEKLVIGIN-----GQFPGPTIRAQAGDTIVVELTNKLHTE--------------------GVV 56 (541)
T ss_pred EEEEEEEE--EecCCCeEeeEEEEC-----CcCCCCeEEEEcCCEEEEEEEECCCCC--------------------Ccc
Confidence 44444454 344555578899998 999999999999999999999999642 799
Q ss_pred EeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCCC
Q 008840 146 VHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEA 223 (551)
Q Consensus 146 iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~~ 223 (551)
|||||+++.+. +||+|+ ++||+|+||++| +|+|+++ ++||||||||. ..|+++||+|+|||+++. ++
T Consensus 57 iHwHGl~~~~~~~~DG~~~--vtq~~I~PG~s~---~y~f~~~-~~Gt~wyH~H~----~~q~~~Gl~G~liV~~~~-~~ 125 (541)
T TIGR03388 57 IHWHGIRQIGTPWADGTAG--VTQCAINPGETF---IYNFVVD-RPGTYFYHGHY----GMQRSAGLYGSLIVDVPD-GE 125 (541)
T ss_pred EEecCcCCcCCcccCCCCc--cccCCcCCCCEE---EEEEEcC-CCEEEEEEecc----hHHhhccceEEEEEecCC-CC
Confidence 99999998654 899998 899999999999 9999996 89999999998 358999999999999765 22
Q ss_pred CCCCCCCCcCceeEEEEEeeecCCCceEecCCCCCCCCCCCCCCccCCceEEECCcc-----------------------
Q 008840 224 PLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKA----------------------- 280 (551)
Q Consensus 224 ~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~lVNG~~----------------------- 280 (551)
+. |..+++|++|+|+||..+...+...... ..+ ..| ...++.++|||+.
T Consensus 126 ~~--p~~~d~e~~l~l~Dw~~~~~~~~~~~~~-~~~---~~~--~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (541)
T TIGR03388 126 KE--PFHYDGEFNLLLSDWWHKSIHEQEVGLS-SKP---MRW--IGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGN 197 (541)
T ss_pred CC--CccccceEEEEeecccCCCHHHHHhhcc-cCC---CcC--CCCCcceEECCCCCCCCccccccCccccchhhccCC
Confidence 22 2224889999999997654322111100 000 001 0234677888862
Q ss_pred ---cC-ceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceE
Q 008840 281 ---WP-RMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVA 355 (551)
Q Consensus 281 ---~P-~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~ 355 (551)
.| .++|++ ++|||||||+|..+.+.|+| +||+|+|||+||+++ +|+.++.|.|+|||||||+|++++.++++|
T Consensus 198 ~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i-d~h~~~VIa~DG~~v-~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y 275 (541)
T TIGR03388 198 EQCAPQILHVEPGKTYRLRIASTTALAALNFAI-EGHKLTVVEADGNYV-EPFTVKDIDIYSGETYSVLLTTDQDPSRNY 275 (541)
T ss_pred CCCCceEEEECCCCEEEEEEEcccccceEEEEE-CCCEEEEEEeCCEec-ccceeCeEEecCCCEEEEEEeCCCCCCCcE
Confidence 23 378987 89999999999999999999 699999999999999 899999999999999999999988766689
Q ss_pred EEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCC-C----CCCCC----------CCCCCCC--C--CCccCceeeEEe
Q 008840 356 ILANDAPYPYPAGNPVNDANGKVMKFIILKNRETD-P----WRVPE----------KLIEYPS--A--DLSAASTTRYIA 416 (551)
Q Consensus 356 ~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~-~----~~lP~----------~L~~~~~--~--~~~~~~~~r~~~ 416 (551)
+|+..... ... ........+++.+..... + ...|. .+..+.. . +...+.++..+.
T Consensus 276 ~ira~~~~-----~~~-~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (541)
T TIGR03388 276 WISVGVRG-----RKP-NTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLL 349 (541)
T ss_pred EEEEeccc-----CCC-CCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEe
Confidence 99875321 100 011223444554322111 0 00110 0111110 0 111122222222
Q ss_pred eeecccCCCCcceEEEcccccCCCCCC-----------------C-------------------c----------ceeee
Q 008840 417 MYEYTSNTGKPTHLLINAKTLEDPVTE-----------------T-------------------P----------KTLDQ 450 (551)
Q Consensus 417 l~~~~~~~g~~~~~~INg~~f~~~~~~-----------------~-------------------~----------~~~~~ 450 (551)
+.. ........|.+||.+|..+... . . ..+++
T Consensus 350 ~~~--~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vd 427 (541)
T TIGR03388 350 NTQ--NKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVD 427 (541)
T ss_pred ccC--cccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEE
Confidence 221 1111234589999988522110 0 0 00334
Q ss_pred EEEEeee------eeeeeeccccCceeeeeeeeccCCc------cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCC
Q 008840 451 TELVNLE------EFKACMNKINDAIKCNLSKHACGKK------QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANAS 518 (551)
Q Consensus 451 ~~l~n~~------~~~~~~~~~~~~~~~~v~~~~~G~~------~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~ 518 (551)
..|.|.. ...|+||+|+|.| .+.....|.- .......+..||||.|++++++.|+|+.+
T Consensus 428 ivi~n~~~~~~~~~~~HP~HLHGh~F--~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad------- 498 (541)
T TIGR03388 428 VILQNANTLNGNNSETHPWHLHGHDF--WVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD------- 498 (541)
T ss_pred EEEECCccccCCCCCCCcEEecCCce--EEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-------
Confidence 4455542 3469999999955 4544333320 01122346789999999999999977766
Q ss_pred CCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 519 YPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 519 ~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
||| |+|||||++|...||+..|..
T Consensus 499 -------NPG~W~~HCHi~~H~~~GM~~~~~e 523 (541)
T TIGR03388 499 -------NPGVWAFHCHIEPHLHMGMGVVFAE 523 (541)
T ss_pred -------CCeEeeeeccchhhhhcccEEEEec
Confidence 899 999999999999999998854
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.9e-60 Score=520.04 Aligned_cols=412 Identities=17% Similarity=0.195 Sum_probs=284.4
Q ss_pred EEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeE
Q 008840 66 LEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTV 145 (551)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~ 145 (551)
+++.+.+..+..+ +. ...+|+|| |++|||+|++++||+|+|+++|+|+.. +|+
T Consensus 11 ~~l~v~~~~~~~~-g~-~r~~~~~N-----G~~PGP~I~~~~GD~v~V~v~N~L~~~--------------------~tt 63 (538)
T TIGR03390 11 HILRVTSDNIKIA-CS-SRYSVVVN-----GTSPGPEIRLQEGQTTWIRVYNDIPDN--------------------NVT 63 (538)
T ss_pred EEEEEEEeEeccC-Ce-EEEEEEEC-----CcCCCCeEEEeCCCEEEEEEEECCCCC--------------------Cce
Confidence 3444445544432 33 56789997 999999999999999999999999842 799
Q ss_pred EeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcC-ccCceeEEeccCCCchhhhhhccceEEEEEeCCCCC
Q 008840 146 VHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNM-QQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVE 222 (551)
Q Consensus 146 iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~-~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~ 222 (551)
|||||+++... +||+|+ +|||+|.||++| +|+|++. +++||||||+|.. .|. .||+|+|||++++ +
T Consensus 64 iHwHGi~~~~~~~~DGvp~--vTQcpI~PG~sf---~Y~f~~~~~q~GT~WYHsH~~----~Q~-~~l~G~lIV~~~~-~ 132 (538)
T TIGR03390 64 MHWHGLTQRTAPFSDGTPL--ASQWPIPPGHFF---DYEIKPEPGDAGSYFYHSHVG----FQA-VTAFGPLIVEDCE-P 132 (538)
T ss_pred EECCCCCCCCCCCCCCCcc--cccCCCCCCCcE---EEEEEecCCCCeeeEEecCCc----hhh-hcceeEEEEccCC-c
Confidence 99999998654 999998 999999999999 9999974 5899999999984 364 4699999999765 3
Q ss_pred CCCCCCCCCcCceeEEEEEeeecCCCceEecCCCCCCCCCCCCCCccCCceEEECCcc----------------cCceee
Q 008840 223 APLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKA----------------WPRMTV 286 (551)
Q Consensus 223 ~~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~lVNG~~----------------~P~~~v 286 (551)
.++ .+++|++|+|+||++..++++....... + ..| ....+.++|||+. .|.++|
T Consensus 133 ~~~----~~d~e~~l~l~Dw~~~~~~~~~~~~~~~-~---~~~--~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v 202 (538)
T TIGR03390 133 PPY----KYDDERILLVSDFFSATDEEIEQGLLST-P---FTW--SGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDV 202 (538)
T ss_pred cCC----CccCcEEEEEeCCCCCCHHHHHhhhhcc-C---Ccc--CCCCceEEECCccccccccccccCCCCCcceEEEE
Confidence 222 2478999999999887665542111000 0 011 1235789999995 367889
Q ss_pred cC-eEEEEEEEecCCCceEEEEEcCCce-EEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCC------CceEEEe
Q 008840 287 RR-RKYRFRIINASNARFFRFFFTNGLR-FIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSEST------SDVAILA 358 (551)
Q Consensus 287 ~~-~~~RlRllNas~~~~~~l~l~~g~~-~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~------g~~~~L~ 358 (551)
++ ++|||||||+|..+.+.|+| +||+ |+||++||.++ +|+.++.|.|++||||||+|++++.. .+.|+|+
T Consensus 203 ~~G~~yRlRlINa~~~~~~~~~i-dgH~~~~VIa~DG~~~-~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir 280 (538)
T TIGR03390 203 EPGKTYRLRFIGATALSLISLGI-EDHENLTIIEADGSYT-KPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQ 280 (538)
T ss_pred CCCCEEEEEEEccCCceEEEEEE-CCCCeEEEEEeCCCCC-CceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEE
Confidence 88 89999999999999999999 6999 99999999976 89999999999999999999999752 2589998
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEEEccCCCCCCCCCC----------------CCCCCCCCC-----CCccCceeeEEee
Q 008840 359 NDAPYPYPAGNPVNDANGKVMKFIILKNRETDPWRVP----------------EKLIEYPSA-----DLSAASTTRYIAM 417 (551)
Q Consensus 359 ~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP----------------~~L~~~~~~-----~~~~~~~~r~~~l 417 (551)
..... . ... ......+++.+......+..| ..|.|+.+. +. .....+.+.+
T Consensus 281 ~~~~~-~----~~~--~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~-~~~~d~~~~l 352 (538)
T TIGR03390 281 FETRD-R----PKV--YRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELEPLSEENNQDFPT-LDEVTRRVVI 352 (538)
T ss_pred EeecC-C----CCc--ceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeEecCccccCCCCC-CCcCceEEEE
Confidence 75321 0 000 112333455322111111011 012232211 11 1112334433
Q ss_pred eecccC--CCCcceEEEcccccCCC--CCC------------------------Ccc----------eeeeEEEEeee--
Q 008840 418 YEYTSN--TGKPTHLLINAKTLEDP--VTE------------------------TPK----------TLDQTELVNLE-- 457 (551)
Q Consensus 418 ~~~~~~--~g~~~~~~INg~~f~~~--~~~------------------------~~~----------~~~~~~l~n~~-- 457 (551)
.-.... ......|+|||.+|..+ .+. ... .+.++.|.|..
T Consensus 353 ~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~ 432 (538)
T TIGR03390 353 DAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSY 432 (538)
T ss_pred EccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcCceEEEcCCCCEEEEEEECCccc
Confidence 222111 11235699999998631 000 000 03445555543
Q ss_pred ------eeeeeeccccCceeeeeeeeccCCcc------CCCCcCCCcCccEEeC----------CCcEEEEEEEEecccc
Q 008840 458 ------EFKACMNKINDAIKCNLSKHACGKKQ------AVPVHEQGWKNVYKIT----------PGYVTRILVRFSYVHA 515 (551)
Q Consensus 458 ------~~~~~~~~~~~~~~~~v~~~~~G~~~------~~~~~e~~wkDTV~v~----------pg~~v~i~~~f~~~~~ 515 (551)
...|+||+|||.| .+.....|.-. ......+-.||||.|+ +++++.|+++++
T Consensus 433 ~~~~~~~~~HP~HlHGh~F--~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~d---- 506 (538)
T TIGR03390 433 TGPNGGVDTHPFHAHGRHF--YDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVT---- 506 (538)
T ss_pred ccCCCCCCCCCeeecCCcE--EEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcC----
Confidence 3579999999955 44443333210 0112356799999995 789999988877
Q ss_pred CCCCCCCCCCCCc-eEEeeccccccccCcccceEEcC
Q 008840 516 NASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKLIK 551 (551)
Q Consensus 516 ~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V~~ 551 (551)
||| |++||||.+|...||+..|.|.+
T Consensus 507 ----------NPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 507 ----------NPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred ----------CCeeEEEeccchhhhhccceEEEEeCC
Confidence 899 99999999999999999999864
No 13
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.2e-59 Score=516.63 Aligned_cols=414 Identities=20% Similarity=0.223 Sum_probs=277.8
Q ss_pred EEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeE
Q 008840 66 LEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTV 145 (551)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~ 145 (551)
+++.+.... ..++.-...+|+|| |++|||+|++++||+|+|+++|+|... +|+
T Consensus 27 y~~~vt~~~--~~pdG~~r~~~~~N-----g~~pgP~i~~~~Gd~v~v~v~N~l~~~--------------------~~~ 79 (566)
T PLN02604 27 YKWEVKYEY--KSPDCFKKLVITIN-----GRSPGPTILAQQGDTVIVELKNSLLTE--------------------NVA 79 (566)
T ss_pred EEEEEEEEE--ECCCCceeeEEEEC-----CccCCCcEEEECCCEEEEEEEeCCCCC--------------------CCC
Confidence 444444442 33455467899998 999999999999999999999998532 799
Q ss_pred EeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCCC
Q 008840 146 VHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEA 223 (551)
Q Consensus 146 iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~~ 223 (551)
|||||+++.+. +||+++ ++||+|.||+++ +|+|+++ ++||||||||.. .|+.+||+|+|||++++ +.
T Consensus 80 iH~HG~~~~~~~~~DG~~~--~tq~~i~pg~s~---~y~f~~~-~~Gt~wyH~H~~----~q~~~Gl~G~liV~~~~-~~ 148 (566)
T PLN02604 80 IHWHGIRQIGTPWFDGTEG--VTQCPILPGETF---TYEFVVD-RPGTYLYHAHYG----MQREAGLYGSIRVSLPR-GK 148 (566)
T ss_pred EEeCCCCCCCCccccCCCc--cccCccCCCCeE---EEEEEcC-CCEEEEEeeCcH----HHHhCCCeEEEEEEecC-CC
Confidence 99999997654 899998 799999999999 9999996 899999999973 58899999999999765 22
Q ss_pred CCCCCCCCcCceeEEEEEeeecCCCceEecCCCCCCCCCCCCCCccCCceEEECCc------------------------
Q 008840 224 PLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGK------------------------ 279 (551)
Q Consensus 224 ~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~lVNG~------------------------ 279 (551)
+. |..+++|.+|+|+||+.....+....... .+. .| ...++.++|||+
T Consensus 149 ~~--p~~~d~d~~l~l~Dw~~~~~~~~~~~~~~-~~~---~~--~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~ 220 (566)
T PLN02604 149 SE--PFSYDYDRSIILTDWYHKSTYEQALGLSS-IPF---DW--VGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPE 220 (566)
T ss_pred CC--ccccCcceEEEeeccccCCHHHHHHhhcc-CCC---cc--CCCCCceEEcCCCCCCCccccCccccccccccCCCC
Confidence 22 22247899999999976543222111100 000 00 012456666664
Q ss_pred cc-CceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEE
Q 008840 280 AW-PRMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAIL 357 (551)
Q Consensus 280 ~~-P~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L 357 (551)
.. +.++|++ ++|||||||+|..+.+.|+| +||+|+|||+||.++ +|++++.|.|++||||||+|++++.+|++|+|
T Consensus 221 ~~~~~~~v~~g~~~RlRlINa~~~~~~~~si-dgH~~~VIa~DG~~v-~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~i 298 (566)
T PLN02604 221 CSPYVLTVVPGKTYRLRISSLTALSALSFQI-EGHNMTVVEADGHYV-EPFVVKNLFIYSGETYSVLVKADQDPSRNYWV 298 (566)
T ss_pred CCceEEEecCCCEEEEEEEeccccceEEEEE-CCCEEEEEEeCCEec-ccceeeeEEEccCCeEEEEEECCCCCCCCEEE
Confidence 12 2578887 89999999999999999999 699999999999999 79999999999999999999999876668999
Q ss_pred ecCCCCCCCCCCCCCCCCCceEEEEEccCCC-C-CCCCCCC--CCCC----------CC---C-CCCccCceeeEEeeee
Q 008840 358 ANDAPYPYPAGNPVNDANGKVMKFIILKNRE-T-DPWRVPE--KLIE----------YP---S-ADLSAASTTRYIAMYE 419 (551)
Q Consensus 358 ~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~-~-~~~~lP~--~L~~----------~~---~-~~~~~~~~~r~~~l~~ 419 (551)
+...... .........| +++.+... . .+...|. .+.. ++ . .........+.+.+..
T Consensus 299 ra~~~~~----~~~~~~~~aI--L~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 372 (566)
T PLN02604 299 TTSVVSR----NNTTPPGLAI--FNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLN 372 (566)
T ss_pred EEecccC----CCCCcceeEE--EEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEec
Confidence 8643211 0001112234 44433210 0 0101110 0000 00 0 0001111123333221
Q ss_pred cccCCCCcceEEEcccccCCCCCC-------------------------------------Cc----------ceeeeEE
Q 008840 420 YTSNTGKPTHLLINAKTLEDPVTE-------------------------------------TP----------KTLDQTE 452 (551)
Q Consensus 420 ~~~~~g~~~~~~INg~~f~~~~~~-------------------------------------~~----------~~~~~~~ 452 (551)
.....+....|.|||..|..+... .. ..+.+..
T Consensus 373 ~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdiv 452 (566)
T PLN02604 373 TQNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDII 452 (566)
T ss_pred cccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEE
Confidence 111111234699999988531100 00 0133445
Q ss_pred EEeee------eeeeeeccccCceeeeeeeeccCCc------cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCC
Q 008840 453 LVNLE------EFKACMNKINDAIKCNLSKHACGKK------QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYP 520 (551)
Q Consensus 453 l~n~~------~~~~~~~~~~~~~~~~v~~~~~G~~------~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p 520 (551)
+.|.. ...|+||+|||.| .+.....|.- .......+..||||.|++++++.|+|+++
T Consensus 453 i~n~~~~~~~~~~~HP~HLHGH~F--~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD--------- 521 (566)
T PLN02604 453 LQNANTMNANNSETHPWHLHGHDF--WVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD--------- 521 (566)
T ss_pred EECCccccCCCCCCCCEEecCCce--EEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC---------
Confidence 55543 2359999999955 4444333320 01122346789999999999999988776
Q ss_pred CCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 521 FDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 521 ~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
||| |++||||++|...|||..|.+
T Consensus 522 -----NPG~WlfHCHI~~Hl~~GM~~v~~e 546 (566)
T PLN02604 522 -----NPGVWAFHCHIESHFFMGMGVVFEE 546 (566)
T ss_pred -----CCeEeeEeecchhHhhcCCEEEEee
Confidence 899 999999999999999998864
No 14
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=5.7e-59 Score=510.42 Aligned_cols=418 Identities=19% Similarity=0.211 Sum_probs=279.2
Q ss_pred EEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeE
Q 008840 66 LEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTV 145 (551)
Q Consensus 66 ~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~ 145 (551)
+++.+.... +.++.-...+|+|| |++|||+||+++||+|+|+++|+|+.. +|+
T Consensus 26 ~~~~vt~~~--~~pdG~~~~v~~vN-----g~~pGP~i~~~~Gd~v~v~v~N~l~~~--------------------~ts 78 (574)
T PLN02191 26 YTWEVEYKY--WWPDCKEGAVMTVN-----GQFPGPTIDAVAGDTIVVHLTNKLTTE--------------------GLV 78 (574)
T ss_pred EEEEEEEEE--eccCCceeeEEEEC-----CcCCCCeEEEEcCCEEEEEEEECCCCC--------------------Ccc
Confidence 444444443 34454478899997 999999999999999999999999852 799
Q ss_pred EeeCCCCCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCCC
Q 008840 146 VHLHGGIDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEA 223 (551)
Q Consensus 146 iH~HG~~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~~ 223 (551)
|||||+++.+. +||+|+ ++||+|+||++| +|+|+++ ++||||||||. ..|+.+||+|+|||+++. +.
T Consensus 79 iHwHGl~~~~~~~~DGv~g--vtq~pI~PG~s~---~Y~f~~~-~~GT~wYHsH~----~~q~~~Gl~G~liV~~~~-~~ 147 (574)
T PLN02191 79 IHWHGIRQKGSPWADGAAG--VTQCAINPGETF---TYKFTVE-KPGTHFYHGHY----GMQRSAGLYGSLIVDVAK-GP 147 (574)
T ss_pred EECCCCCCCCCccccCCCc--cccCCcCCCCeE---EEEEECC-CCeEEEEeeCc----HHHHhCCCEEEEEEccCC-CC
Confidence 99999999875 999999 899999999999 9999996 89999999997 358999999999998654 21
Q ss_pred CCCCCCCCcCceeEEEEEeeecCCCceEecCCC-C-----CC-----CCCCCC--------CCccCC--ceEEECCcccC
Q 008840 224 PLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTG-N-----NP-----SIHPQW--------QPEYFG--DVIVVNGKAWP 282 (551)
Q Consensus 224 ~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~~g-~-----~~-----~~~~~~--------~~~~~g--d~~lVNG~~~P 282 (551)
.. |..+++|++|+|+||+............. . .+ ++...+ ..+..+ ..+++||+..|
T Consensus 148 ~~--~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p 225 (574)
T PLN02191 148 KE--RLRYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAP 225 (574)
T ss_pred CC--CCCCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCc
Confidence 11 12248899999999965431111000000 0 00 000000 000011 13556776666
Q ss_pred -ceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecC
Q 008840 283 -RMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILAND 360 (551)
Q Consensus 283 -~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~ 360 (551)
.++|++ ++|||||||+|..+.+.|+| +||+|+||++||.++ +|+.+++|.|++||||||+|++++.++++|+|+..
T Consensus 226 ~~~~v~~G~~yRlRiINa~~~~~~~~~i-dgH~~tVIa~DG~~v-~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~ 303 (574)
T PLN02191 226 QTLRVEPNKTYRIRLASTTALASLNLAV-QGHKLVVVEADGNYI-TPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVG 303 (574)
T ss_pred eEEEEcCCCEEEEEEEecCCceeEEEEE-CCCeEEEEEcCCeec-cceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEE
Confidence 589998 89999999999999999999 699999999999999 89999999999999999999999876668999875
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEccCCCCC-CC----CCCC----------CCCCCCC---CCCccCceeeEEeeeeccc
Q 008840 361 APYPYPAGNPVNDANGKVMKFIILKNRETD-PW----RVPE----------KLIEYPS---ADLSAASTTRYIAMYEYTS 422 (551)
Q Consensus 361 ~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~-~~----~lP~----------~L~~~~~---~~~~~~~~~r~~~l~~~~~ 422 (551)
..... .. ....+..+++.+..... ++ ..|. .+..+.. .+.+.....+.+.+.. ..
T Consensus 304 ~~~~~-----~~-~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~ 376 (574)
T PLN02191 304 VRGRK-----PN-TTQALTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNT-QN 376 (574)
T ss_pred ccccC-----CC-CCCceEEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecc-cc
Confidence 32110 00 11123445554322111 10 0110 0000110 0011111122222221 11
Q ss_pred CCCCcceEEEcccccCCCCCC------------------------------------Cc----------ceeeeEEEEee
Q 008840 423 NTGKPTHLLINAKTLEDPVTE------------------------------------TP----------KTLDQTELVNL 456 (551)
Q Consensus 423 ~~g~~~~~~INg~~f~~~~~~------------------------------------~~----------~~~~~~~l~n~ 456 (551)
.......|.|||.+|..+.+. .. ..+.+..|.|.
T Consensus 377 ~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~ 456 (574)
T PLN02191 377 LIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNA 456 (574)
T ss_pred eeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECC
Confidence 111234689999887522110 00 01334445554
Q ss_pred e------eeeeeeccccCceeeeeeeeccCCcc------CCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCC
Q 008840 457 E------EFKACMNKINDAIKCNLSKHACGKKQ------AVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDAT 524 (551)
Q Consensus 457 ~------~~~~~~~~~~~~~~~~v~~~~~G~~~------~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~ 524 (551)
. ...|+||+|||.| .+.....|.-. ......+..||||.|++++++.|+++.+
T Consensus 457 ~~~~~~~~~~HP~HLHGh~F--~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD------------- 521 (574)
T PLN02191 457 NVLKGVVSEIHPWHLHGHDF--WVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD------------- 521 (574)
T ss_pred CcccCCCCCCCCEEeCCCCe--EEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-------------
Confidence 3 4579999999955 45443444210 0123456799999999999999977776
Q ss_pred CCCc-eEEeeccccccccCcccceE
Q 008840 525 AEPG-YVYHCHILDHEDNIMMRPLK 548 (551)
Q Consensus 525 ~~pg-~~~HCHiL~HED~GMM~~~~ 548 (551)
||| |++||||.+|...||...|.
T Consensus 522 -NPG~Wl~HCHi~~Hl~~Gm~~~~~ 545 (574)
T PLN02191 522 -NPGVWFFHCHIEPHLHMGMGVVFA 545 (574)
T ss_pred -CCEEEEEecCchhhhhcCCEEEEe
Confidence 999 99999999999999998874
No 15
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.6e-58 Score=495.43 Aligned_cols=402 Identities=25% Similarity=0.342 Sum_probs=288.9
Q ss_pred EEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEE
Q 008840 67 EIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVV 146 (551)
Q Consensus 67 ~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~i 146 (551)
.+......+++.... .+..|+|+ |++|||+||+++||+|+|+++|+|.+ +|++
T Consensus 36 ~~~~~~~~~~~~~~~-~~~~~~~~-----g~~~gP~i~~~~Gd~v~l~~~N~l~~---------------------~t~v 88 (451)
T COG2132 36 FLTAQRAQLAFAPGT-GATVWGYN-----GALPGPTIRVKKGDTVTLDLTNRLLV---------------------DTSV 88 (451)
T ss_pred EEeecccceeeecCC-CceeEEec-----ccccCceEEEecCCEEEEEEEeCCCC---------------------CceE
Confidence 333455556665555 78899998 89999999999999999999999996 5999
Q ss_pred eeCCCCCCCCCCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCCCCCC
Q 008840 147 HLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLR 226 (551)
Q Consensus 147 H~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~~~~~ 226 (551)
||||+.+++.+||.+. .+++.+.+|+++ +|.|+.+ .+||||||+|.++ |+++||+|++||+|+. +.
T Consensus 89 h~HG~~~p~~~dG~~~--~~~~~~~~~~~~---~y~f~~~-~~gT~wyh~H~~~----Q~~~Gl~G~~II~~~~-~~--- 154 (451)
T COG2132 89 HWHGLPVPGEMDGVPP--LTQIPPGPGETP---TYTFTQD-VPGTYWYHPHTHG----QVYDGLAGALIIEDEN-SE--- 154 (451)
T ss_pred EEcCcccCccccCCCc--ccccCCCCCCcE---EEeecCC-CCcceEeccCCCc----hhhcccceeEEEeCCC-CC---
Confidence 9999999999999876 566667788877 9999996 5669999999987 9999999999999875 32
Q ss_pred CCCCCcCceeEEEEEeeecCCCceEecCCCCCCCCCCCCCCccCCceEEECCcccCceeecCeEEEEEEEecCCCceEEE
Q 008840 227 LPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRMTVRRRKYRFRIINASNARFFRF 306 (551)
Q Consensus 227 lP~~~~~e~~lvl~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~lVNG~~~P~~~v~~~~~RlRllNas~~~~~~l 306 (551)
|.+ .+|.+++++|..++.++...+.. ..|..++.|++.+|||+.+|++.+++++|||||+|+++.+.+++
T Consensus 155 -~~~-~d~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~vnG~~~p~~~~~~g~~rlRl~n~~~~~~~~~ 224 (451)
T COG2132 155 -PLG-VDDEPVILQDDWLDEDGTDLYQE--------GPAMGGFPGDTLLVNGAILPFKAVPGGVVRLRLLNAGNARTYHL 224 (451)
T ss_pred -CCC-CCceEEEEEeeeecCCCCccccC--------CccccCCCCCeEEECCCccceeecCCCeEEEEEEecCCceEEEE
Confidence 224 56777777777788888765442 13344677999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccC
Q 008840 307 FFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKN 386 (551)
Q Consensus 307 ~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~ 386 (551)
++. |++|+||++||++++. +.++.+.|+||||+||+|++.+ ++.+.|.+.... ...-..+.......++......
T Consensus 225 ~~~-~~~~~Vi~~DG~~v~~-~~~d~~~l~p~er~~v~v~~~~--~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 299 (451)
T COG2132 225 ALG-GGPLTVIAVDGGPLPP-VSVDELYLAPGERYEVLVDMND--GGAVTLTALGED-MPDTLKGFRAPNPILTPSYPVL 299 (451)
T ss_pred Eec-CceEEEEEeCCcCcCc-eeeeeEEecCcceEEEEEEcCC--CCeEEEEecccc-CCceeeeeeccccccccccccc
Confidence 996 9999999999999955 9999999999999999999998 458888875411 0000000000000010000000
Q ss_pred CCCCCCCCCCCCC---CCC---CCCC-cc-CceeeEEeeeecccCCCCcceEEEcccccCCC-CCCCcc--eeeeEEEEe
Q 008840 387 RETDPWRVPEKLI---EYP---SADL-SA-ASTTRYIAMYEYTSNTGKPTHLLINAKTLEDP-VTETPK--TLDQTELVN 455 (551)
Q Consensus 387 ~~~~~~~lP~~L~---~~~---~~~~-~~-~~~~r~~~l~~~~~~~g~~~~~~INg~~f~~~-~~~~~~--~~~~~~l~n 455 (551)
. .....|.... ... .... .. ..+...+.+.... ....|.||++.|++. .....+ ..++|.+.|
T Consensus 300 ~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n 373 (451)
T COG2132 300 N--GRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIGGI----GGYVWAINGKAFDDNRVTLIAKAGTRERWVLTN 373 (451)
T ss_pred c--ccccCCCcchhhccccccchhhcCCCcccccccchhhccc----ccccccccCccCCCCcCceeecCCCEEEEEEEC
Confidence 0 0000011000 000 0000 00 1111222221110 124589999999962 211111 288999999
Q ss_pred eeeeeeeeccccCceeeeeeeeccCCccCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeec
Q 008840 456 LEEFKACMNKINDAIKCNLSKHACGKKQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCH 534 (551)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~v~~~~~G~~~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCH 534 (551)
.+.+.|++|.|++.| ++... + .+......+|||||.+.|++.+.|+++++ +|| ||||||
T Consensus 374 ~~~~~HP~HlHg~~F--~v~~~-~---~~~~~~~~~~kDTv~v~~~~~~~v~~~a~--------------~~g~~~~HCH 433 (451)
T COG2132 374 DTPMPHPFHLHGHFF--QVLSG-D---APAPGAAPGWKDTVLVAPGERLLVRFDAD--------------YPGPWMFHCH 433 (451)
T ss_pred CCCCccCeEEcCceE--EEEec-C---CCcccccCccceEEEeCCCeEEEEEEeCC--------------CCCceEEecc
Confidence 999999999999955 55442 2 23334556999999999998877766665 567 999999
Q ss_pred cccccccCcccceEEc
Q 008840 535 ILDHEDNIMMRPLKLI 550 (551)
Q Consensus 535 iL~HED~GMM~~~~V~ 550 (551)
+|+|||+|||+++.|.
T Consensus 434 ~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 434 ILEHEDNGMMGQFGVV 449 (451)
T ss_pred chhHhhcCCeeEEEec
Confidence 9999999999999885
No 16
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-50 Score=437.13 Aligned_cols=400 Identities=22% Similarity=0.285 Sum_probs=271.8
Q ss_pred CccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC--CCCC
Q 008840 83 PTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPE--SDGY 160 (551)
Q Consensus 83 ~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~--~DG~ 160 (551)
+..+.+- ||++|||+|+|++||+|.|++.|++.+ +++|||||+++... +||
T Consensus 46 ~~~vi~i-----NG~fPGP~I~~~~gD~ivV~v~N~~~~---------------------~~sihWhGv~q~kn~w~DG- 98 (563)
T KOG1263|consen 46 EKQVITI-----NGQFPGPTINAEEGDTIVVNVVNRLDE---------------------PFSIHWHGVRQRKNPWQDG- 98 (563)
T ss_pred cceeEee-----cCCCCCCeEEEEeCCEEEEEEEeCCCC---------------------ceEEEeccccccCCccccC-
Confidence 3445555 499999999999999999999999997 89999999998765 899
Q ss_pred CCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCCCCCCCCCCCcCceeEEEE
Q 008840 161 AKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEAPLRLPSGDVFDRPLFVF 240 (551)
Q Consensus 161 p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~~~~~lP~~~~~e~~lvl~ 240 (551)
+. +|||+|+||++| +|+|+++++.||||||+|.. .|-++|++|+|||+++. ..++++|.. ++|++|+|+
T Consensus 99 ~~--~TqCPI~Pg~~~---tY~F~v~~q~GT~~yh~h~~----~~Ra~G~~G~liI~~~~-~~p~pf~~p-d~E~~ill~ 167 (563)
T KOG1263|consen 99 VY--ITQCPIQPGENF---TYRFTVKDQIGTLWYHSHVS----WQRATGVFGALIINPRP-GLPVPFPKP-DKEFTILLG 167 (563)
T ss_pred Cc--cccCCcCCCCeE---EEEEEeCCcceeEEEeeccc----cccccCceeEEEEcCCc-cCCCCCCCC-CceeEEEeE
Confidence 55 899999999999 99999999999999999984 46789999999999655 444555643 899999999
Q ss_pred EeeecCCCceE---ecCCCCCCCCCCCCCCccCCceEEECCccc------CceeecC-eEEEEEEEecCCCceEEEEEcC
Q 008840 241 DRNFLTNGSIY---MNSTGNNPSIHPQWQPEYFGDVIVVNGKAW------PRMTVRR-RKYRFRIINASNARFFRFFFTN 310 (551)
Q Consensus 241 d~~~~~~g~~~---~~~~g~~~~~~~~~~~~~~gd~~lVNG~~~------P~~~v~~-~~~RlRllNas~~~~~~l~l~~ 310 (551)
||..+.+-+.. ....+.. +. ..|..+|||+.. +.++|++ ++|||||+|++.+..+.|+| .
T Consensus 168 dW~~~~~~~~l~~~~~~~~~~--------p~-~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I-~ 237 (563)
T KOG1263|consen 168 DWYKNLNHKNLKNFLDRTGAL--------PN-PSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSI-A 237 (563)
T ss_pred eeccccCHHHHHHhhccCCCC--------CC-CCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEE-C
Confidence 99553232211 1111111 11 168999999983 4678988 89999999999999899999 5
Q ss_pred CceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCC
Q 008840 311 GLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKNRETD 390 (551)
Q Consensus 311 g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~ 390 (551)
+|.|+||++||.++ +|...++|.|.||||++|+|++++.++ +|+++....... ..... ....+..+++.+.....
T Consensus 238 ~H~ltvVe~Dg~y~-~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~--~~~~~-~~t~~~~l~y~~~~~~~ 312 (563)
T KOG1263|consen 238 NHQLTVVEVDGAYT-KPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDA--SNVPF-NLTTTGILRYSGSTHPA 312 (563)
T ss_pred CeEEEEEEecceEE-eeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeecc--CCcce-eeeEEEEEEEeCCcccC
Confidence 99999999999999 899999999999999999999999986 888876542210 00000 11123334444321111
Q ss_pred CCC------CCC------------CCCCC-----CCCCCccC------ceeeEEeeeecccCCCCcceEEEcccccCCCC
Q 008840 391 PWR------VPE------------KLIEY-----PSADLSAA------STTRYIAMYEYTSNTGKPTHLLINAKTLEDPV 441 (551)
Q Consensus 391 ~~~------lP~------------~L~~~-----~~~~~~~~------~~~r~~~l~~~~~~~g~~~~~~INg~~f~~~~ 441 (551)
... +|. .++.+ +.+.+... ...+.+.+-......+....+.||+..|-.+.
T Consensus 313 s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~ 392 (563)
T KOG1263|consen 313 SEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPK 392 (563)
T ss_pred cccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCC
Confidence 111 111 01100 00000000 00111111111111122345678877775543
Q ss_pred C--------------------CCc---------ce-----------eeeEEEEeeee---eeeeeccccCceeeeeeeec
Q 008840 442 T--------------------ETP---------KT-----------LDQTELVNLEE---FKACMNKINDAIKCNLSKHA 478 (551)
Q Consensus 442 ~--------------------~~~---------~~-----------~~~~~l~n~~~---~~~~~~~~~~~~~~~v~~~~ 478 (551)
+ ..| .. +.+-.+-|.+. ..|++|+|++.| .+.-..
T Consensus 393 tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F--~Vvg~g 470 (563)
T KOG1263|consen 393 TPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNF--YVVGYG 470 (563)
T ss_pred CchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEE--EEEEec
Confidence 2 111 00 11222333222 235668888744 444332
Q ss_pred cCCc-------cCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEEc
Q 008840 479 CGKK-------QAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKLI 550 (551)
Q Consensus 479 ~G~~-------~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V~ 550 (551)
.|.- ..-...++--||||.|+||+++.|+|++| ||| |.+||||.+|.-.||..-|+|.
T Consensus 471 ~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad--------------NPG~W~~HCHie~H~~~G~~~~f~V~ 536 (563)
T KOG1263|consen 471 FGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD--------------NPGVWLMHCHIEDHLYLGMETVFIVG 536 (563)
T ss_pred ccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC--------------CCcEEEEEEecHHHHhccCeEEEEEe
Confidence 2210 11234456789999999999999988887 899 9999999999999999999986
Q ss_pred C
Q 008840 551 K 551 (551)
Q Consensus 551 ~ 551 (551)
+
T Consensus 537 ~ 537 (563)
T KOG1263|consen 537 N 537 (563)
T ss_pred C
Confidence 4
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=5.1e-43 Score=358.17 Aligned_cols=248 Identities=18% Similarity=0.160 Sum_probs=201.3
Q ss_pred eeEEEEEEEEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008840 64 KKLEIGMFEKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVP 143 (551)
Q Consensus 64 ~~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~ 143 (551)
.++++.+.+.++++.++. .+.+|+|| |++|||+||+++||+|+|+|+|++... .+
T Consensus 28 ~~~~l~a~~~~~~~~~G~-~~~~~~~n-----G~~pGP~irv~~Gd~v~v~v~N~~~~~-------------------~~ 82 (311)
T TIGR02376 28 VEVTMTIEEKKMVIDDGV-TYQAMTFD-----GSVPGPLIRVHEGDYVELTLINPPTNT-------------------MP 82 (311)
T ss_pred EEEEEEEEEEEEEeCCCe-EEEEEEEC-----CcccCceEEEECCCEEEEEEEeCCCCC-------------------Cc
Confidence 467888888888887776 78899998 999999999999999999999998531 17
Q ss_pred eEEeeCCCCCCCCCCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCCCCC
Q 008840 144 TVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPDVEA 223 (551)
Q Consensus 144 t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~~~~ 223 (551)
+++||||.. .+||++. +++ |.||+++ +|+|.++ ++||||||||.++.+..|+++||+|+|||++++ .
T Consensus 83 h~~h~H~~~---~~dg~~~--~~~--I~PG~t~---ty~F~~~-~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~-~- 149 (311)
T TIGR02376 83 HNVDFHAAT---GALGGAA--LTQ--VNPGETA---TLRFKAT-RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPRE-G- 149 (311)
T ss_pred eeeeecCCC---ccCCCCc--cee--ECCCCeE---EEEEEcC-CCEEEEEEcCCCCchhHHhhcCcceEEEeeccC-C-
Confidence 999999963 4688775 565 8999999 9999996 899999999999888899999999999999643 2
Q ss_pred CCCCCCCCcCceeEEEEEeeecCCCceEecCCCCCCCCCCCCCCccCCceEEECCccc---CceeecC-eEEEEEEEecC
Q 008840 224 PLRLPSGDVFDRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGKAW---PRMTVRR-RKYRFRIINAS 299 (551)
Q Consensus 224 ~~~lP~~~~~e~~lvl~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~lVNG~~~---P~~~v~~-~~~RlRllNas 299 (551)
+|. .++|++|+++||+++.++....... . ...++....+++++|||+.. |.+++++ +++||||+|+|
T Consensus 150 ---~~~-~d~e~~l~l~d~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~ 220 (311)
T TIGR02376 150 ---LPE-YDKEYYIGESDLYTPKDEGEGGAYE----D-DVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQ 220 (311)
T ss_pred ---CcC-cceeEEEeeeeEecccccccccccc----c-hHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCC
Confidence 233 3889999999998876543210000 0 00001123468999999964 5678887 89999999999
Q ss_pred CCceEEEEEcCCceEEEEEcCCCCCCCce-EecEEEEccCceEEEEEEcCCCCCceEEEecCC
Q 008840 300 NARFFRFFFTNGLRFIHVGSDSAYLGKPV-VTNDTVLAPAEIADVVIDFSESTSDVAILANDA 361 (551)
Q Consensus 300 ~~~~~~l~l~~g~~~~via~DG~~l~~P~-~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~~ 361 (551)
+++.+.|++ .|+.|++|+.||+++..|. .++++.|+||||+||+|+++++ | .|.+++..
T Consensus 221 ~~~~~~~~~-~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~p-G-~y~~~~~~ 280 (311)
T TIGR02376 221 PNRDSRPHL-IGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQP-G-VYAYVDHN 280 (311)
T ss_pred CCCCCCCeE-ecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCCC-e-EEEEECcH
Confidence 999999999 5999999999999997666 5899999999999999999974 4 89998764
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.97 E-value=8.8e-31 Score=230.07 Aligned_cols=111 Identities=33% Similarity=0.561 Sum_probs=98.6
Q ss_pred EEEEeecCCCCCccEEEeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCC
Q 008840 72 EKKWKFHRDLPPTPVFAFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGG 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~~~~~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~ 151 (551)
+.++.+.... ..+|+|| |++|||+||+++||+|+|+|+|+|+. +++|||||+
T Consensus 4 ~~~~~~~~~~--~~~~~~n-----g~~pGPtI~v~~Gd~v~i~~~N~l~~---------------------~~siH~HG~ 55 (117)
T PF07732_consen 4 ETTVSPDGGT--RKVWTYN-----GQFPGPTIRVREGDTVRITVTNNLDE---------------------PTSIHWHGL 55 (117)
T ss_dssp EEEEETTSTE--EEEEEET-----TBSSEEEEEEETTEEEEEEEEEESSS---------------------GBSEEEETS
T ss_pred EEEEEeCCcE--EEEEEEC-----CCCCCCEEEEEcCCeeEEEEEecccc---------------------cccccccee
Confidence 4555664433 8899998 99999999999999999999999987 899999999
Q ss_pred CCCCC--CCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCC
Q 008840 152 IDEPE--SDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHP 219 (551)
Q Consensus 152 ~~~~~--~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp 219 (551)
++++. +||+++ .++++|.||+++ +|+|++.+++||||||||.++ |..+||+|+|||+++
T Consensus 56 ~~~~~~~~DG~~~--~~~~~i~pG~~~---~Y~~~~~~~~Gt~wYH~H~~~----~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 56 HQPPSPWMDGVPG--VTQCPIAPGESF---TYEFTANQQAGTYWYHSHVHG----QQVMGLYGAIIVEPP 116 (117)
T ss_dssp BSTTGGGGSGGTT--TSGSSBSTTEEE---EEEEEESSCSEEEEEEECSTT----HHHTTEEEEEEEE-T
T ss_pred eeeeeeecCCccc--ccceeEEeecce---eeeEeeeccccceeEeeCCCc----hhcCcCEEEEEEcCC
Confidence 99988 999998 688899999999 999999877999999999987 545999999999964
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.79 E-value=2.5e-19 Score=166.51 Aligned_cols=121 Identities=21% Similarity=0.306 Sum_probs=92.4
Q ss_pred ceeEEEEEeeecCCCceEecCCCCCCCCCCCCCCccCCceEEECCc-------------ccCceeecC-eEEEEEEEecC
Q 008840 234 DRPLFVFDRNFLTNGSIYMNSTGNNPSIHPQWQPEYFGDVIVVNGK-------------AWPRMTVRR-RKYRFRIINAS 299 (551)
Q Consensus 234 e~~lvl~d~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~lVNG~-------------~~P~~~v~~-~~~RlRllNas 299 (551)
|++|+++||+.+....+........ ..... ....++.++|||+ ..|.+++++ ++|||||||+|
T Consensus 2 e~~i~l~DW~~~~~~~~~~~~~~~~-~~~~~--~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 2 EYVIMLSDWYHDDSDDLLQQYFAPG-KGPMG--MPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGEEEEEEETSSCTTTHBH-HSSCH-HHSHS--CTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred eEEEEEeECCCCCHHHhhhhhcccc-ccccC--CCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEecc
Confidence 7899999996443333321111000 00000 1346899999995 357889998 89999999999
Q ss_pred CCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCCceEEEecC
Q 008840 300 NARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTSDVAILAND 360 (551)
Q Consensus 300 ~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g~~~~L~~~ 360 (551)
+.+.+.|+| +||+|+|||.||.++ +|..+++|.|+|||||||+|++++. +++|+|+..
T Consensus 79 ~~~~~~~~i-~gh~~~Via~DG~~v-~p~~~~~l~l~~G~R~dvlv~~~~~-~g~y~i~~~ 136 (159)
T PF00394_consen 79 ASTSFNFSI-DGHPMTVIAADGVPV-EPYKVDTLVLAPGQRYDVLVTADQP-PGNYWIRAS 136 (159)
T ss_dssp SS-BEEEEE-TTBCEEEEEETTEEE-EEEEESBEEE-TTEEEEEEEEECSC-SSEEEEEEE
T ss_pred CCeeEEEEe-eccceeEeeeccccc-cccccceEEeeCCeEEEEEEEeCCC-CCeEEEEEe
Confidence 999999999 699999999999999 5999999999999999999999984 459999984
No 20
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.75 E-value=1.9e-18 Score=156.62 Aligned_cols=87 Identities=26% Similarity=0.456 Sum_probs=71.0
Q ss_pred eeeEEEEeeeeeeeeeccccCceeeeeeeeccCC-----ccCCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCC
Q 008840 448 LDQTELVNLEEFKACMNKINDAIKCNLSKHACGK-----KQAVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFD 522 (551)
Q Consensus 448 ~~~~~l~n~~~~~~~~~~~~~~~~~~v~~~~~G~-----~~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~ 522 (551)
+++|.+.|.....|++|.|++.| .+.....+. .......++.|||||.|+++++++|+++++
T Consensus 43 ~v~~~l~N~~~~~Hp~HlHG~~F--~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~----------- 109 (138)
T PF07731_consen 43 VVEIVLQNNGSMPHPFHLHGHSF--QVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD----------- 109 (138)
T ss_dssp EEEEEEEECTTSSEEEEETTSEE--EEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-----------
T ss_pred EEEEEEECCCCCccceEEEeeEE--EeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-----------
Confidence 77899999888899999999954 555532221 122356788999999999999999999987
Q ss_pred CCCCCc-eEEeeccccccccCcccceEEc
Q 008840 523 ATAEPG-YVYHCHILDHEDNIMMRPLKLI 550 (551)
Q Consensus 523 ~~~~pg-~~~HCHiL~HED~GMM~~~~V~ 550 (551)
+|| ||||||||+|||+|||+.|+|.
T Consensus 110 ---~~G~w~~HCHi~~H~~~GM~~~~~v~ 135 (138)
T PF07731_consen 110 ---NPGPWLFHCHILEHEDNGMMAVFVVG 135 (138)
T ss_dssp ---STEEEEEEESSHHHHHTT-EEEEEEC
T ss_pred ---cceEEEEEEchHHHHhCCCeEEEEEc
Confidence 678 9999999999999999999985
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.57 E-value=1.6e-14 Score=131.80 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=71.5
Q ss_pred CCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCC--CCCCCCCCcceeccccCCC--
Q 008840 98 VPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDE--PESDGYAKSWFTAGFEEKG-- 173 (551)
Q Consensus 98 ~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~--~~~DG~p~~~~t~~~i~pG-- 173 (551)
.+||+|++++||+|+|+++|.+... .| ...||+||...+ +.+||++. .+++++.|+
T Consensus 49 ~~~P~I~v~~Gd~V~v~v~N~~~~~--------~H----------~~~I~~~g~~~~~~p~mdG~~~--~~~~~i~p~~~ 108 (148)
T TIGR03095 49 LKNPTIVIPEGVTVHFTVINTDTDS--------GH----------NFDISKRGPPYPYMPGMDGLGF--VAGTGFLPPPK 108 (148)
T ss_pred CCCCEEEEcCCCEEEEEEEeCCCCc--------cc----------cEEeecCCCccccccccCCCCc--cccCcccCCCC
Confidence 7899999999999999999986531 11 578899988654 45899886 666666663
Q ss_pred -CCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 174 -PTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 174 -~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
..+...++.|... ++||||||||..+ |..+||+|.|||+
T Consensus 109 ~g~~~~~~~tf~f~-~aGtywyhC~~pg----H~~~GM~G~iiV~ 148 (148)
T TIGR03095 109 SGKFGYTDFTYHFS-TAGTYWYLCTYPG----HAENGMYGKIVVK 148 (148)
T ss_pred CCccceeEEEEECC-CCeEEEEEcCChh----HHHCCCEEEEEEC
Confidence 1110125667765 8999999999854 6678999999996
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.42 E-value=6.1e-13 Score=146.66 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=80.9
Q ss_pred CccEEEeecCCCCCCCCC--cEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCC-CC
Q 008840 83 PTPVFAFGTSSLTASVPG--PTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPES-DG 159 (551)
Q Consensus 83 ~~~~~~y~~~~~ng~~PG--Pti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~-DG 159 (551)
...+|+|| |+.++ +.|++++||+|+|+|.|.+.. ++.+||||....... ||
T Consensus 484 ~~~~wtiN-----G~~~~~~~pl~v~~Gervri~l~N~t~~---------------------~HpmHlHG~~f~v~~~~G 537 (587)
T TIGR01480 484 ERFAWSFD-----GEAFGLKTPLRFNYGERLRVVLVNDTMM---------------------AHPIHLHGMWSELEDGQG 537 (587)
T ss_pred ceeEEEEC-----CccCCCCCceEecCCCEEEEEEECCCCC---------------------CcceeEcCceeeeecCCC
Confidence 45679998 88777 479999999999999999887 899999999766554 55
Q ss_pred CCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 160 YAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 160 ~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
.....-....|.||+++ +|+|.++ ++|+||||||.. .|...||++.+.|+
T Consensus 538 ~~~~~~dTv~V~Pg~t~---~~~f~ad-~pG~w~~HCH~l----~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 538 EFQVRKHTVDVPPGGKR---SFRVTAD-ALGRWAYHCHML----LHMEAGMFREVTVR 587 (587)
T ss_pred cccccCCceeeCCCCEE---EEEEECC-CCeEEEEcCCCH----HHHhCcCcEEEEeC
Confidence 32111111368999999 9999996 899999999973 57889999999874
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.07 E-value=2e-08 Score=103.27 Aligned_cols=221 Identities=18% Similarity=0.185 Sum_probs=133.9
Q ss_pred CceEEECCcc-cCceeecC-eEEEEEEEecCCC-ceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEc
Q 008840 271 GDVIVVNGKA-WPRMTVRR-RKYRFRIINASNA-RFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDF 347 (551)
Q Consensus 271 gd~~lVNG~~-~P~~~v~~-~~~RlRllNas~~-~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~ 347 (551)
-+.+++||+. .|.+.++. +++++++.|.... ....+++ |++. +.||+.. ...|.|||++.+-+++
T Consensus 47 ~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~-H~~~----~~dg~~~-------~~~I~PG~t~ty~F~~ 114 (311)
T TIGR02376 47 YQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDF-HAAT----GALGGAA-------LTQVNPGETATLRFKA 114 (311)
T ss_pred EEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeee-cCCC----ccCCCCc-------ceeECCCCeEEEEEEc
Confidence 3588999995 48999988 8999999998632 3455666 5653 4577532 1238999999998887
Q ss_pred CCCCCceEEEecCCCC----CCCCCCCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeecc--
Q 008840 348 SESTSDVAILANDAPY----PYPAGNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYT-- 421 (551)
Q Consensus 348 ~~~~g~~~~L~~~~~~----~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~-- 421 (551)
++ + ++|+....... ....| -.-.|.|.... .+|. ..++..+.+.++.
T Consensus 115 ~~-~-Gty~YH~H~~~~~~~q~~~G--------l~G~liV~~~~-----~~~~------------~d~e~~l~l~d~~~~ 167 (311)
T TIGR02376 115 TR-P-GAFVYHCAPPGMVPWHVVSG--------MNGAIMVLPRE-----GLPE------------YDKEYYIGESDLYTP 167 (311)
T ss_pred CC-C-EEEEEEcCCCCchhHHhhcC--------cceEEEeeccC-----CCcC------------cceeEEEeeeeEecc
Confidence 65 3 48988876321 11111 12234454321 1110 0011111111110
Q ss_pred ---------------cCCCCcceEEEcccccCC--CCCCCcceeeeEEEEeeee-eeeeeccccCceeeeeeeeccCCcc
Q 008840 422 ---------------SNTGKPTHLLINAKTLED--PVTETPKTLDQTELVNLEE-FKACMNKINDAIKCNLSKHACGKKQ 483 (551)
Q Consensus 422 ---------------~~~g~~~~~~INg~~f~~--~~~~~~~~~~~~~l~n~~~-~~~~~~~~~~~~~~~v~~~~~G~~~ 483 (551)
...+.+..++|||+.+.- ...-.+.....|.++|... ....+|..++.+ .+.. .+|...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~--~~v~-~DG~~~ 244 (311)
T TIGR02376 168 KDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHG--DYVW-VTGKFA 244 (311)
T ss_pred ccccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCc--eEEE-ECCccc
Confidence 011234568999996432 1111222367899999764 223455556533 2322 367433
Q ss_pred CCCCcCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeecccccc-ccCcccceEEc
Q 008840 484 AVPVHEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHE-DNIMMRPLKLI 550 (551)
Q Consensus 484 ~~~~~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HE-D~GMM~~~~V~ 550 (551)
.++ ....||+.+.||++..|+++++ .|| |++|||...|. ..|||+.|+|-
T Consensus 245 ~~~---~~~~~~~~i~PG~R~dv~v~~~--------------~pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 245 NPP---NRDVETWFIPGGSAAAALYTFE--------------QPGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred CCC---CCCcceEEECCCceEEEEEEeC--------------CCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 321 1247999999999999999988 457 99999999998 77999988863
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=98.86 E-value=1.2e-08 Score=90.59 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=69.9
Q ss_pred eeEEEEEEEEEE-ee-cCCCCCccEE-EeecCCCCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCC
Q 008840 64 KKLEIGMFEKKW-KF-HRDLPPTPVF-AFGTSSLTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKK 140 (551)
Q Consensus 64 ~~~~i~~~~~~~-~~-~~~~~~~~~~-~y~~~~~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~ 140 (551)
++++|.++++++ ++ -++. .+..+ ++| +++..+.|+|++||+|+++|.|.-+..|
T Consensus 27 f~~~i~~~~~~~~~~~~~~~-~~~~i~a~n-----~~~~P~~I~VkaGD~Vtl~vtN~d~~~H----------------- 83 (135)
T TIGR03096 27 FTVVINAYDTTIPELNVEGV-TVKNIRAFN-----VLNEPEALVVKKGTPVKVTVENKSPISE----------------- 83 (135)
T ss_pred eEEEEeccccEeeEEEeCCE-EEEEEEeee-----eEEcCCEEEECCCCEEEEEEEeCCCCcc-----------------
Confidence 567777778887 66 4444 45556 776 9999999999999999999999755310
Q ss_pred CCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCC
Q 008840 141 GVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMG 200 (551)
Q Consensus 141 ~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g 200 (551)
..+++.||. +..+.||++. +|+|+++ .+|+|||||-.|.
T Consensus 84 --~f~i~~~gi---------------s~~I~pGet~---TitF~ad-KpG~Y~y~C~~HP 122 (135)
T TIGR03096 84 --GFSIDAYGI---------------SEVIKAGETK---TISFKAD-KAGAFTIWCQLHP 122 (135)
T ss_pred --ceEECCCCc---------------ceEECCCCeE---EEEEECC-CCEEEEEeCCCCC
Confidence 234444432 1147899998 9999996 9999999999985
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=98.40 E-value=1.5e-05 Score=87.74 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=64.3
Q ss_pred EEECCcccC----ceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCC--ceEecEEEEccCceEEEEEE
Q 008840 274 IVVNGKAWP----RMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGK--PVVTNDTVLAPAEIADVVID 346 (551)
Q Consensus 274 ~lVNG~~~P----~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~--P~~~~~l~l~pgeR~dVlv~ 346 (551)
++|||+.+. .++++. .+.+|+|+|.+......+|| ||+.|+|++.||..++. +-.+|++.+.| ++++|+|+
T Consensus 414 ~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~Hl-Hg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~ 491 (523)
T PRK10965 414 NKINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHI-HGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVK 491 (523)
T ss_pred ccCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEE-eCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEE
Confidence 489999864 356776 79999999999644456666 79999999999998742 23479999976 88999999
Q ss_pred cCCCCC--ceEEEec
Q 008840 347 FSESTS--DVAILAN 359 (551)
Q Consensus 347 ~~~~~g--~~~~L~~ 359 (551)
|+...+ +.|.+..
T Consensus 492 f~~~~~~~g~~~~HC 506 (523)
T PRK10965 492 FDHDAPKEHAYMAHC 506 (523)
T ss_pred ecCCCCCCCCEEEEe
Confidence 986431 2555554
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.39 E-value=7.3e-05 Score=82.95 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=57.4
Q ss_pred cEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCCccee--ccccCCCCCcc
Q 008840 101 PTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEP-ESDGYAKSWFT--AGFEEKGPTWT 177 (551)
Q Consensus 101 Pti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~-~~DG~p~~~~t--~~~i~pG~~~~ 177 (551)
++|+|++|+++++|+.|.-... ...+|.+|....- ..||.+-.++. .-.|.+|+++
T Consensus 187 ~~i~v~~G~~~RlRlINa~~~~--------------------~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRy- 245 (539)
T TIGR03389 187 FKLTVEPGKTYLLRIINAALND--------------------ELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTT- 245 (539)
T ss_pred eEEEECCCCEEEEEEEeccCCc--------------------eEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEE-
Confidence 5899999999999999986542 5677888765332 27887633322 2257899998
Q ss_pred eeeEEEEcCccCceeEEeccCC
Q 008840 178 NETYHYHNMQQPGNTWYHDHTM 199 (551)
Q Consensus 178 ~~~y~f~~~~~~Gt~wYH~H~~ 199 (551)
+..+.+++.+|.||.+.+..
T Consensus 246 --dVlv~a~~~~g~y~i~~~~~ 265 (539)
T TIGR03389 246 --NVLLTADQSPGRYFMAARPY 265 (539)
T ss_pred --EEEEECCCCCceEEEEEecc
Confidence 88889887899999998853
No 27
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.28 E-value=1.8e-06 Score=77.89 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=67.3
Q ss_pred CCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC-CCCCCC-----------cce
Q 008840 98 VPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPE-SDGYAK-----------SWF 165 (551)
Q Consensus 98 ~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~-~DG~p~-----------~~~ 165 (551)
.-.+.++++.|+.+++.+.|.... ++.+|+||....-. .++.+. +..
T Consensus 31 ~~~~~~~~~~g~~v~~~l~N~~~~---------------------~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~ 89 (138)
T PF07731_consen 31 GNTPVIEVKNGDVVEIVLQNNGSM---------------------PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPG 89 (138)
T ss_dssp STTSEEEEETTSEEEEEEEECTTS---------------------SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSS
T ss_pred CCcceEEEeCCCEEEEEEECCCCC---------------------ccceEEEeeEEEeeecCCcccccccccccccccCc
Confidence 347899999999999999997665 79999999975321 122221 000
Q ss_pred --eccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 166 --TAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 166 --t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
....+.||+.. +.+|.++ .+|.|.||||.. .+..+||.+.+.|.
T Consensus 90 ~~DTv~v~~~~~~---~i~~~~~-~~G~w~~HCHi~----~H~~~GM~~~~~v~ 135 (138)
T PF07731_consen 90 WRDTVLVPPGGWV---VIRFRAD-NPGPWLFHCHIL----EHEDNGMMAVFVVG 135 (138)
T ss_dssp EESEEEEETTEEE---EEEEEET-STEEEEEEESSH----HHHHTT-EEEEEEC
T ss_pred ccccccccceeEE---EEEEEee-cceEEEEEEchH----HHHhCCCeEEEEEc
Confidence 00135677777 8999996 999999999984 47889999999997
No 28
>PRK02710 plastocyanin; Provisional
Probab=98.17 E-value=5.2e-05 Score=66.88 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=51.9
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCccee
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNE 179 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~ 179 (551)
-+.|++++||+ |+|+|.-.. ++++.+.|.. +.. .+...+.||+++
T Consensus 46 P~~i~v~~Gd~--V~~~N~~~~---------------------~H~v~~~~~~------~~~---~~~~~~~pg~t~--- 90 (119)
T PRK02710 46 PSTLTIKAGDT--VKWVNNKLA---------------------PHNAVFDGAK------ELS---HKDLAFAPGESW--- 90 (119)
T ss_pred CCEEEEcCCCE--EEEEECCCC---------------------CceEEecCCc------ccc---ccccccCCCCEE---
Confidence 47999999997 567786443 6777765431 111 111236789988
Q ss_pred eEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 180 TYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 180 ~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
+|.|.. +|+|-|+|=.| -.+||.|.|+|+
T Consensus 91 ~~tF~~---~G~y~y~C~~H------~~~gM~G~I~V~ 119 (119)
T PRK02710 91 EETFSE---AGTYTYYCEPH------RGAGMVGKITVE 119 (119)
T ss_pred EEEecC---CEEEEEEcCCC------ccCCcEEEEEEC
Confidence 777764 89999999865 248999999985
No 29
>PRK10883 FtsI repressor; Provisional
Probab=98.17 E-value=8.8e-05 Score=80.80 Aligned_cols=80 Identities=14% Similarity=0.263 Sum_probs=58.4
Q ss_pred eEEECCcccC----ceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCc---eEecEEEEccCceEEEE
Q 008840 273 VIVVNGKAWP----RMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKP---VVTNDTVLAPAEIADVV 344 (551)
Q Consensus 273 ~~lVNG~~~P----~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P---~~~~~l~l~pgeR~dVl 344 (551)
.++|||+.|. .+.++. ++++|+|.|.. .+ .||| ||+.|+|+..||... .| -..|+|.+ + ++++|+
T Consensus 362 ~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~~-~H--P~Hl-Hg~~FqVl~~~G~~~-~~~~~gwkDTV~v-~-~~v~i~ 434 (471)
T PRK10883 362 LPGINGALWDMNRIDVTAQQGTWERWTVRADM-PQ--AFHI-EGVMFLIRNVNGAMP-FPEDRGWKDTVWV-D-GQVELL 434 (471)
T ss_pred cCccCCcccCCCcceeecCCCCEEEEEEECCC-Cc--CEeE-CCccEEEEEecCCCC-CccccCcCcEEEc-C-CeEEEE
Confidence 3479999874 245665 79999998873 34 4556 899999999999854 23 23699999 4 579999
Q ss_pred EEcCCCCCc--eEEEec
Q 008840 345 IDFSESTSD--VAILAN 359 (551)
Q Consensus 345 v~~~~~~g~--~~~L~~ 359 (551)
++|+...+. .|.+..
T Consensus 435 ~~f~~~~~~~~~~m~HC 451 (471)
T PRK10883 435 VYFGQPSWAHFPFLFYS 451 (471)
T ss_pred EEecCCCCCCCcEEeec
Confidence 999987543 455544
No 30
>PLN02835 oxidoreductase
Probab=98.01 E-value=0.0013 Score=72.94 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=59.3
Q ss_pred CCCCCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCCcce--ecccc
Q 008840 94 LTASVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEP-ESDGYAKSWF--TAGFE 170 (551)
Q Consensus 94 ~ng~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~-~~DG~p~~~~--t~~~i 170 (551)
+||+. .|++++++|+++|+|+.|.-... ...+|+.|....- ..||.+-... ..-.|
T Consensus 196 iNG~~-~~~~~v~~G~~yRlRliNa~~~~--------------------~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i 254 (539)
T PLN02835 196 INGQT-QSTFSGDQGKTYMFRISNVGLST--------------------SLNFRIQGHTMKLVEVEGSHTIQNIYDSLDV 254 (539)
T ss_pred Ecccc-CceEEECCCCEEEEEEEEcCCCc--------------------cEEEEECCCEEEEEEECCccCCCceeeEEEE
Confidence 46654 47999999999999999986652 5778888766432 3788753222 22347
Q ss_pred CCCCCcceeeEEEEcCccCceeEEecc
Q 008840 171 EKGPTWTNETYHYHNMQQPGNTWYHDH 197 (551)
Q Consensus 171 ~pG~~~~~~~y~f~~~~~~Gt~wYH~H 197 (551)
.+|+++ +.-+++++.+|.||.+.-
T Consensus 255 ~~GqRy---dvlv~~~~~~g~y~i~a~ 278 (539)
T PLN02835 255 HVGQSV---AVLVTLNQSPKDYYIVAS 278 (539)
T ss_pred CcCceE---EEEEEcCCCCCcEEEEEE
Confidence 899988 888888888899999863
No 31
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.01 E-value=3e-05 Score=66.10 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=52.9
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC-CCCCCCcceeccccCCCCCcce
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPE-SDGYAKSWFTAGFEEKGPTWTN 178 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~-~DG~p~~~~t~~~i~pG~~~~~ 178 (551)
-..|++++||+| +|+|.-.. ++++.++....+.. .+..+...-....+.||+++
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~---------------------~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~-- 70 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGG---------------------PHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESY-- 70 (99)
T ss_pred CCEEEECCCCEE--EEEECCCC---------------------CceEEECCCCCccchhhhcccccccccccCCCCEE--
Confidence 568999999985 66686433 57776654432211 00111100011236799988
Q ss_pred eeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 179 ETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 179 ~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
++.|.. +|+|+|||-.| -.+||.|.|+|+
T Consensus 71 -~~tF~~---~G~y~y~C~~H------~~aGM~G~I~V~ 99 (99)
T TIGR02656 71 -EVTFST---PGTYTFYCEPH------RGAGMVGKITVE 99 (99)
T ss_pred -EEEeCC---CEEEEEEcCCc------cccCCEEEEEEC
Confidence 777764 99999999854 358999999985
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=97.98 E-value=0.00064 Score=75.51 Aligned_cols=77 Identities=18% Similarity=0.122 Sum_probs=53.7
Q ss_pred cEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCCccee--ccccCCCCCcc
Q 008840 101 PTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEP-ESDGYAKSWFT--AGFEEKGPTWT 177 (551)
Q Consensus 101 Pti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~-~~DG~p~~~~t--~~~i~pG~~~~ 177 (551)
++|.|++|+++|+|+.|..... ...+++.|....- ..||.+-.++. .-.|.||+++
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~--------------------~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~- 261 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALA--------------------ALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETY- 261 (541)
T ss_pred eEEEECCCCEEEEEEEcccccc--------------------eEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEE-
Confidence 4589999999999999985542 5666666654322 26887633222 2247899988
Q ss_pred eeeEEEEcCccC-ceeEEeccCCC
Q 008840 178 NETYHYHNMQQP-GNTWYHDHTMG 200 (551)
Q Consensus 178 ~~~y~f~~~~~~-Gt~wYH~H~~g 200 (551)
+.-+.+++.+ |.||.+.-..+
T Consensus 262 --dvlv~~~~~~~~~y~ira~~~~ 283 (541)
T TIGR03388 262 --SVLLTTDQDPSRNYWISVGVRG 283 (541)
T ss_pred --EEEEeCCCCCCCcEEEEEeccc
Confidence 8888887665 48999876543
No 33
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.92 E-value=0.00041 Score=75.44 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=66.2
Q ss_pred CCceEEECCcccCc----eeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCC-CceEecEEEEccCceEEE
Q 008840 270 FGDVIVVNGKAWPR----MTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLG-KPVVTNDTVLAPAEIADV 343 (551)
Q Consensus 270 ~gd~~lVNG~~~P~----~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~-~P~~~~~l~l~pgeR~dV 343 (551)
.+..+.+||+.++. +.++. +++||+|.|-+. -...||+ ||+.|+|++.|..... .+..+|++.+.|++|..|
T Consensus 341 ~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~Hl-Hg~~F~v~~~~~~~~~~~~~~kDTv~v~~~~~~~v 418 (451)
T COG2132 341 GGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHL-HGHFFQVLSGDAPAPGAAPGWKDTVLVAPGERLLV 418 (451)
T ss_pred ccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEE-cCceEEEEecCCCcccccCccceEEEeCCCeEEEE
Confidence 35679999998873 34555 899999999996 4455666 8999999999933222 346689999999999988
Q ss_pred EEEcCCCCCceEEEecC
Q 008840 344 VIDFSESTSDVAILAND 360 (551)
Q Consensus 344 lv~~~~~~g~~~~L~~~ 360 (551)
.++.+.+ | .|.+...
T Consensus 419 ~~~a~~~-g-~~~~HCH 433 (451)
T COG2132 419 RFDADYP-G-PWMFHCH 433 (451)
T ss_pred EEeCCCC-C-ceEEecc
Confidence 8888765 3 6766654
No 34
>PLN02604 oxidoreductase
Probab=97.89 E-value=0.00082 Score=74.98 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=52.6
Q ss_pred eeecC-eEEEEEEEecCC-----CceEEEEEcCCceEEEEEcCCCC-----------CCCceEecEEEEccCceEEEEEE
Q 008840 284 MTVRR-RKYRFRIINASN-----ARFFRFFFTNGLRFIHVGSDSAY-----------LGKPVVTNDTVLAPAEIADVVID 346 (551)
Q Consensus 284 ~~v~~-~~~RlRllNas~-----~~~~~l~l~~g~~~~via~DG~~-----------l~~P~~~~~l~l~pgeR~dVlv~ 346 (551)
+.++. +++.+.|.|... .-...+|| |||.|+|++...+. +..|...|++.+.++.-+-|-+.
T Consensus 441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HL-HGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~ 519 (566)
T PLN02604 441 YRLQFNSTVDIILQNANTMNANNSETHPWHL-HGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFR 519 (566)
T ss_pred EEccCCCeEEEEEECCccccCCCCCCCCEEe-cCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEE
Confidence 44555 899999999752 12345566 89999999988442 23477789999999988877777
Q ss_pred cCCCCCceEEEecC
Q 008840 347 FSESTSDVAILAND 360 (551)
Q Consensus 347 ~~~~~g~~~~L~~~ 360 (551)
++++ | -..|+..
T Consensus 520 aDNP-G-~WlfHCH 531 (566)
T PLN02604 520 ADNP-G-VWAFHCH 531 (566)
T ss_pred CCCC-e-EeeEeec
Confidence 7664 3 5555554
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=97.77 E-value=0.003 Score=70.07 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=53.4
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCC-CCC-CCCCCCCcceec--cccCCCCC
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGI-DEP-ESDGYAKSWFTA--GFEEKGPT 175 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~-~~~-~~DG~p~~~~t~--~~i~pG~~ 175 (551)
.|+|++++|+++++|+.|.-... ...+++.|.. ..- +.||.+..++.. -.|.+|++
T Consensus 197 ~~~~~v~~G~~yRlRlINa~~~~--------------------~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqR 256 (538)
T TIGR03390 197 LPVIDVEPGKTYRLRFIGATALS--------------------LISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQR 256 (538)
T ss_pred ceEEEECCCCEEEEEEEccCCce--------------------EEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCE
Confidence 47999999999999999986642 4566766654 221 378876433322 24789999
Q ss_pred cceeeEEEEcCcc-------CceeEEeccC
Q 008840 176 WTNETYHYHNMQQ-------PGNTWYHDHT 198 (551)
Q Consensus 176 ~~~~~y~f~~~~~-------~Gt~wYH~H~ 198 (551)
+ +.-+.+++. +|-||...-.
T Consensus 257 y---dVlv~~~~~~~~~~~~~~~Y~ir~~~ 283 (538)
T TIGR03390 257 Y---SVLFKAKTEDELCGGDKRQYFIQFET 283 (538)
T ss_pred E---EEEEECCCccccccCCCCcEEEEEee
Confidence 8 788888754 4889987653
No 36
>PLN02168 copper ion binding / pectinesterase
Probab=97.42 E-value=0.015 Score=64.38 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=117.3
Q ss_pred ceEEECCcc-cCceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEE-EcCCCCCCCceEecEEEEccCceEEEEEEcC
Q 008840 272 DVIVVNGKA-WPRMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHV-GSDSAYLGKPVVTNDTVLAPAEIADVVIDFS 348 (551)
Q Consensus 272 d~~lVNG~~-~P~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~vi-a~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~ 348 (551)
..++|||+. -|.|+++. +++++++.|--.. ...||. ||..+.-- ..||.+. .+-.|.||+++..-++++
T Consensus 46 ~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~-~ttiHW-HGl~~~~~~~~DGv~g------tQcpI~PG~sftY~F~~~ 117 (545)
T PLN02168 46 QVIVINDMFPGPLLNATANDVINVNIFNNLTE-PFLMTW-NGLQLRKNSWQDGVRG------TNCPILPGTNWTYRFQVK 117 (545)
T ss_pred EEEEECCcCCCCcEEEECCCEEEEEEEeCCCC-CccEee-CCccCCCCCCcCCCCC------CcCCCCCCCcEEEEEEeC
Confidence 579999995 68999987 8999999999854 457788 78433211 1488642 235799999999999886
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeeccc------
Q 008840 349 ESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTS------ 422 (551)
Q Consensus 349 ~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~~------ 422 (551)
+.+| +|+-.+....++..|. --.+.|.+... + ..| ++.. ..+..+.|.++-.
T Consensus 118 ~q~G-T~WYHsH~~~Q~~~GL--------~G~lII~~~~~-~--~~p-----~~~~-----d~e~~l~l~Dw~~~~~~~~ 175 (545)
T PLN02168 118 DQIG-SYFYFPSLLLQKAAGG--------YGAIRIYNPEL-V--PVP-----FPKP-----DEEYDILIGDWFYADHTVM 175 (545)
T ss_pred CCCc-eEEEecChhhhhhCcc--------eeEEEEcCCcc-c--CcC-----cCcc-----cceeeEEEEecCCCCHHHH
Confidence 4444 9998887544333331 11234433211 1 111 0000 0111122221100
Q ss_pred ----CCC----CcceEEEcccccCCC-CCCCcceeeeEEEEeeeeee-eeeccccCceeeeeeeeccCCccCCCCcCCCc
Q 008840 423 ----NTG----KPTHLLINAKTLEDP-VTETPKTLDQTELVNLEEFK-ACMNKINDAIKCNLSKHACGKKQAVPVHEQGW 492 (551)
Q Consensus 423 ----~~g----~~~~~~INg~~f~~~-~~~~~~~~~~~~l~n~~~~~-~~~~~~~~~~~~~v~~~~~G~~~~~~~~e~~w 492 (551)
..+ .+..++|||+.-..+ ..-.+.....++++|..... ..++..+|.+ .+.. .+|....| .-
T Consensus 176 ~~~~~~g~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~--tVIa-~DG~~v~p-----~~ 247 (545)
T PLN02168 176 RASLDNGHSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDM--LLVE-TEGTYVQK-----RV 247 (545)
T ss_pred HhhhhcCCCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEE--EEEE-ECCeECCC-----ce
Confidence 001 234589999852222 11123336678999986543 2244456644 3333 46743332 22
Q ss_pred CccEEeCCCcEEEEEEEEe
Q 008840 493 KNVYKITPGYVTRILVRFS 511 (551)
Q Consensus 493 kDTV~v~pg~~v~i~~~f~ 511 (551)
.|++.+.+||+..|+++++
T Consensus 248 ~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 248 YSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred eeEEEEcCCceEEEEEEcC
Confidence 5999999999999999997
No 37
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.42 E-value=0.00041 Score=59.04 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=50.4
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC--CC-CCCCcceeccccCCCCCc
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPE--SD-GYAKSWFTAGFEEKGPTW 176 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~--~D-G~p~~~~t~~~i~pG~~~ 176 (551)
-..|++++||+| +|.|.-.. ++++.+=-...+.. .+ ..+.. ....+.||+++
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~---------------------~Hnv~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~ 70 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSM---------------------PHNVVFVADGMPAGADSDYVPPGD--SSPLLAPGETY 70 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSS---------------------SBEEEEETTSSHTTGGHCHHSTTC--EEEEBSTTEEE
T ss_pred CCEEEECCCCEE--EEEECCCC---------------------CceEEEecccccccccccccCccc--cceecCCCCEE
Confidence 579999999975 56675332 46665532111000 00 00100 11136789887
Q ss_pred ceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 177 TNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 177 ~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
++.|. .+|+|.|+|-.| ..+||.|.|+|+
T Consensus 71 ---~~tF~---~~G~y~y~C~PH------~~~GM~G~i~V~ 99 (99)
T PF00127_consen 71 ---SVTFT---KPGTYEYYCTPH------YEAGMVGTIIVE 99 (99)
T ss_dssp ---EEEEE---SSEEEEEEETTT------GGTTSEEEEEEE
T ss_pred ---EEEeC---CCeEEEEEcCCC------cccCCEEEEEEC
Confidence 78887 799999999753 247999999996
No 38
>PLN02792 oxidoreductase
Probab=97.40 E-value=0.016 Score=64.20 Aligned_cols=202 Identities=15% Similarity=0.180 Sum_probs=117.2
Q ss_pred ceEEECCcc-cCceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEE-EcCCCCCCCceEecEEEEccCceEEEEEEcC
Q 008840 272 DVIVVNGKA-WPRMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHV-GSDSAYLGKPVVTNDTVLAPAEIADVVIDFS 348 (551)
Q Consensus 272 d~~lVNG~~-~P~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~vi-a~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~ 348 (551)
..++|||+. -|.|+++. +++++++.|--. ....||. ||..+.-- ..||... . +-.|.||+.+.--++++
T Consensus 36 ~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~-~~ttiHW-HGl~q~~~~~~DGv~~-----t-qcPI~PG~sftY~F~~~ 107 (536)
T PLN02792 36 RGILINGQFPGPEIRSLTNDNLVINVHNDLD-EPFLLSW-NGVHMRKNSYQDGVYG-----T-TCPIPPGKNYTYDFQVK 107 (536)
T ss_pred EEEEECCCCCCCcEEEECCCEEEEEEEeCCC-CCcCEeC-CCcccCCCCccCCCCC-----C-cCccCCCCcEEEEEEeC
Confidence 589999995 69999987 899999999975 4556777 67443222 2699543 1 25789999999888886
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeecc-------
Q 008840 349 ESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYT------- 421 (551)
Q Consensus 349 ~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~------- 421 (551)
+..| +|+-.+....+...|.. -.+.+..... ++ .| ++.. ..+..+.|.++-
T Consensus 108 ~q~G-T~WYHsH~~~q~~~Gl~--------G~liI~~~~~-~~--~p-----~~~~-----d~e~~i~l~Dw~~~~~~~~ 165 (536)
T PLN02792 108 DQVG-SYFYFPSLAVQKAAGGY--------GSLRIYSLPR-IP--VP-----FPEP-----AGDFTFLIGDWYRRNHTTL 165 (536)
T ss_pred CCcc-ceEEecCcchhhhcccc--------cceEEeCCcc-cC--cC-----CCcc-----cceeEEEecccccCCHHHH
Confidence 4444 89988875443322211 1133322111 11 11 1100 001122222110
Q ss_pred -------cCCC-CcceEEEcccccCCC--CCCCcceeeeEEEEeeeeee-eeeccccCceeeeeeeeccCCccCCCCcCC
Q 008840 422 -------SNTG-KPTHLLINAKTLEDP--VTETPKTLDQTELVNLEEFK-ACMNKINDAIKCNLSKHACGKKQAVPVHEQ 490 (551)
Q Consensus 422 -------~~~g-~~~~~~INg~~f~~~--~~~~~~~~~~~~l~n~~~~~-~~~~~~~~~~~~~v~~~~~G~~~~~~~~e~ 490 (551)
...+ .+..++|||+..... ..-.+.....++|+|..... ..+...+|.+ .+.. .+|....|
T Consensus 166 ~~~~~~g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~--tVI~-~DG~~v~p----- 237 (536)
T PLN02792 166 KKILDGGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQL--KLIE-VEGTHTVQ----- 237 (536)
T ss_pred HHHhhccCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEE--EEEE-eCCccCCC-----
Confidence 0001 234689999853221 11123346788999987543 2344456644 3433 46643322
Q ss_pred CcCccEEeCCCcEEEEEEEEe
Q 008840 491 GWKNVYKITPGYVTRILVRFS 511 (551)
Q Consensus 491 ~wkDTV~v~pg~~v~i~~~f~ 511 (551)
.-.|++.|.+||++.|+++.+
T Consensus 238 ~~~~~l~i~~GqRydVlV~a~ 258 (536)
T PLN02792 238 SMYTSLDIHVGQTYSVLVTMD 258 (536)
T ss_pred cceeEEEEccCceEEEEEEcC
Confidence 235999999999999999987
No 39
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.40 E-value=0.0014 Score=53.95 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=49.3
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCccee
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNE 179 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~ 179 (551)
-+.|++++||+| +|.|.-.. ++++++....... .+ +....+.+|++|
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~---------------------~Hnv~~~~g~~~~-~~------~~~~~~~~g~~~--- 56 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAM---------------------PHNVHFVAGVLGE-AA------LKGPMMKKEQAY--- 56 (83)
T ss_pred CCEEEECCCCEE--EEEECCCC---------------------CccEEecCCCCcc-cc------ccccccCCCCEE---
Confidence 578999999986 56787443 6888876532111 00 111124466654
Q ss_pred eEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 180 TYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 180 ~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
+|+.+ .+|+|-|||=.|. .|.|.++|+
T Consensus 57 --~~tf~-~~G~y~y~C~~Hp--------~M~G~v~V~ 83 (83)
T TIGR02657 57 --SLTFT-EAGTYDYHCTPHP--------FMRGKVVVE 83 (83)
T ss_pred --EEECC-CCEEEEEEcCCCC--------CCeEEEEEC
Confidence 55554 7999999999974 499999985
No 40
>PLN02354 copper ion binding / oxidoreductase
Probab=97.39 E-value=0.016 Score=64.48 Aligned_cols=202 Identities=15% Similarity=0.176 Sum_probs=118.7
Q ss_pred ceEEECCcc-cCceeecC-eEEEEEEEecCCCceEEEEEcCCceEEE-EEcCCCCCCCceEecEEEEccCceEEEEEEcC
Q 008840 272 DVIVVNGKA-WPRMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIH-VGSDSAYLGKPVVTNDTVLAPAEIADVVIDFS 348 (551)
Q Consensus 272 d~~lVNG~~-~P~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~v-ia~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~ 348 (551)
..++|||+. .|.|+++. +++++++.|.-. ....+|. ||..+.- -..||.+. ..-.|.||+.+.--++..
T Consensus 47 ~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~-~~ttiHW-HGi~q~~~~~~DGv~~------TQcpI~PG~sf~Y~F~~~ 118 (552)
T PLN02354 47 QVILINGQFPGPNINSTSNNNIVINVFNNLD-EPFLLTW-SGIQQRKNSWQDGVPG------TNCPIPPGTNFTYHFQPK 118 (552)
T ss_pred EEEEECCCCcCCcEEEeCCCEEEEEEEECCC-CCccccc-ccccCCCCcccCCCcC------CcCCCCCCCcEEEEEEeC
Confidence 589999995 69999987 899999999984 4456777 6754332 23688542 345899999999888875
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeecc-------
Q 008840 349 ESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYT------- 421 (551)
Q Consensus 349 ~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~------- 421 (551)
+..| +|+-.+....++..|.. -.+.|.+... . ..| ++. ...+..+.+.++-
T Consensus 119 ~q~G-T~WYHsH~~~Q~~~Gl~--------G~lII~~~~~-~--~~p-----~~~-----~d~e~~l~l~Dw~~~~~~~~ 176 (552)
T PLN02354 119 DQIG-SYFYYPSTGMHRAAGGF--------GGLRVNSRLL-I--PVP-----YAD-----PEDDYTVLIGDWYTKSHTAL 176 (552)
T ss_pred CCCc-ceEEecCccceecCCcc--------ceEEEcCCcC-C--CCC-----CCC-----cCceEEEEeeeeccCCHHHH
Confidence 4444 89988765444433321 1234433211 0 011 110 0111222222210
Q ss_pred -------cCCCCcceEEEcccccCC-----CC-CCCcceeeeEEEEeeeeeee-eeccccCceeeeeeeeccCCccCCCC
Q 008840 422 -------SNTGKPTHLLINAKTLED-----PV-TETPKTLDQTELVNLEEFKA-CMNKINDAIKCNLSKHACGKKQAVPV 487 (551)
Q Consensus 422 -------~~~g~~~~~~INg~~f~~-----~~-~~~~~~~~~~~l~n~~~~~~-~~~~~~~~~~~~v~~~~~G~~~~~~~ 487 (551)
...+.+...+|||+.... +. .-.+.....++|+|...... .++..+|.+ .+.. .+|....|
T Consensus 177 ~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~--tVIa-~DG~~v~p-- 251 (552)
T PLN02354 177 KKFLDSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKM--KLVE-MEGSHVLQ-- 251 (552)
T ss_pred HHHHhcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceE--EEEE-eCCcccCC--
Confidence 011234568999985321 11 11222366789998775432 244456643 3333 46743322
Q ss_pred cCCCcCccEEeCCCcEEEEEEEEe
Q 008840 488 HEQGWKNVYKITPGYVTRILVRFS 511 (551)
Q Consensus 488 ~e~~wkDTV~v~pg~~v~i~~~f~ 511 (551)
.-.|++.|.+||+..|+++++
T Consensus 252 ---~~~~~l~i~~GqRydVlv~a~ 272 (552)
T PLN02354 252 ---NDYDSLDVHVGQCFSVLVTAN 272 (552)
T ss_pred ---cceeEEEEccCceEEEEEECC
Confidence 236999999999999999987
No 41
>PLN02991 oxidoreductase
Probab=97.36 E-value=0.018 Score=63.75 Aligned_cols=202 Identities=16% Similarity=0.189 Sum_probs=118.9
Q ss_pred ceEEECCcc-cCceeecC-eEEEEEEEecCCCceEEEEEcCCceEE-EEEcCCCCCCCceEecEEEEccCceEEEEEEcC
Q 008840 272 DVIVVNGKA-WPRMTVRR-RKYRFRIINASNARFFRFFFTNGLRFI-HVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFS 348 (551)
Q Consensus 272 d~~lVNG~~-~P~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~-via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~ 348 (551)
..++|||+. .|.|+++. +++++++.|.-. ....+|. ||..+. --..||.+. . +-.|.||+.+.--++++
T Consensus 48 ~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~-~~ttiHW-HGi~q~~~~~~DGv~~-----t-QcpI~PG~sftY~F~~~ 119 (543)
T PLN02991 48 QGILINGKFPGPDIISVTNDNLIINVFNHLD-EPFLISW-SGIRNWRNSYQDGVYG-----T-TCPIPPGKNYTYALQVK 119 (543)
T ss_pred EEEEEcCCCCCCcEEEECCCEEEEEecCCCC-CCccEEE-CCcccCCCccccCCCC-----C-CCccCCCCcEEEEEEeC
Confidence 589999995 69999987 899999999984 4557788 785532 223699642 1 45799999999888886
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeecc-------
Q 008840 349 ESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYT------- 421 (551)
Q Consensus 349 ~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~------- 421 (551)
+.+| +|+-.+....+...| -.-.+.|..... + ..|. +.. .....+.|.++-
T Consensus 120 ~q~G-T~WYHsH~~~q~~~G--------l~G~lIV~~~~~-~--~~p~-----~~~-----d~d~~i~l~DW~~~~~~~~ 177 (543)
T PLN02991 120 DQIG-SFYYFPSLGFHKAAG--------GFGAIRISSRPL-I--PVPF-----PAP-----ADDYTVLIGDWYKTNHKDL 177 (543)
T ss_pred CCCc-ceEEecCcchhhhCC--------CeeeEEEeCCcc-c--Cccc-----ccc-----cceeEEEecceecCCHHHH
Confidence 4444 999888754332222 111244433211 1 1111 000 011122222110
Q ss_pred ----cCCC---CcceEEEcccccCCCCCCCcceeeeEEEEeeeeee-eeeccccCceeeeeeeeccCCccCCCCcCCCcC
Q 008840 422 ----SNTG---KPTHLLINAKTLEDPVTETPKTLDQTELVNLEEFK-ACMNKINDAIKCNLSKHACGKKQAVPVHEQGWK 493 (551)
Q Consensus 422 ----~~~g---~~~~~~INg~~f~~~~~~~~~~~~~~~l~n~~~~~-~~~~~~~~~~~~~v~~~~~G~~~~~~~~e~~wk 493 (551)
...+ .+...+|||+.......-.+.....++|+|..... ..+...+|.+ .+.. .+|.... +.-.
T Consensus 178 ~~~~~~~~~~~~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~--tVIa-~DG~~~~-----p~~~ 249 (543)
T PLN02991 178 RAQLDNGGKLPLPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTM--KLVE-VEGTHTI-----QTPF 249 (543)
T ss_pred HHHhhcCCCCCCCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEE--EEEE-eCCcccc-----ceee
Confidence 0011 23468999985432222223335678999987543 2344556744 3433 4663222 2346
Q ss_pred ccEEeCCCcEEEEEEEEe
Q 008840 494 NVYKITPGYVTRILVRFS 511 (551)
Q Consensus 494 DTV~v~pg~~v~i~~~f~ 511 (551)
|++.+.+||+..|+++++
T Consensus 250 ~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 250 SSLDVHVGQSYSVLITAD 267 (543)
T ss_pred eEEEEcCCcEEEEEEECC
Confidence 899999999999999987
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.32 E-value=0.0004 Score=59.64 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=43.7
Q ss_pred cEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCcceee
Q 008840 101 PTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNET 180 (551)
Q Consensus 101 Pti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~~ 180 (551)
.+|++++|++++|+++|.-.. ++.+...++. +.. .+.||++. +
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~---------------------~h~~~i~~~~------------~~~-~l~~g~~~---~ 77 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSR---------------------PHEFVIPDLG------------ISK-VLPPGETA---T 77 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS----------------------EEEEEGGGT------------EEE-EE-TT-EE---E
T ss_pred CEEEEcCCCeEEEEEEECCCC---------------------cEEEEECCCc------------eEE-EECCCCEE---E
Confidence 499999999999999998554 4555555422 221 47899988 9
Q ss_pred EEEEcCccCceeEEeccCCCchhhhhhccceEEEEE
Q 008840 181 YHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYIL 216 (551)
Q Consensus 181 y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV 216 (551)
+.|+. ..+|+|=|+|-.|+ . |.|-|||
T Consensus 78 ~~f~~-~~~G~y~~~C~~~~-------~-m~G~liV 104 (104)
T PF13473_consen 78 VTFTP-LKPGEYEFYCTMHP-------N-MKGTLIV 104 (104)
T ss_dssp EEEEE--S-EEEEEB-SSS--------T-TB-----
T ss_pred EEEcC-CCCEEEEEEcCCCC-------c-ceecccC
Confidence 99987 49999999999864 3 6777765
No 43
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.98 E-value=0.0045 Score=54.22 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=48.5
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEee-CCCCCCCCCCCCCCcceeccccCCCCCcce
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHL-HGGIDEPESDGYAKSWFTAGFEEKGPTWTN 178 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~-HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~ 178 (551)
...|+|++||+|+..+.|. ++++.+ .+.. .+|... +.. .+|++|
T Consensus 14 P~~v~V~~GdTV~f~n~d~------------------------~Hnv~~~~~~~----p~g~~~--~~s---~~g~~~-- 58 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK------------------------GHNVETIKGMI----PEGAEA--FKS---KINEEY-- 58 (116)
T ss_pred CCEEEECCCCEEEEEECCC------------------------CeeEEEccCCC----cCCccc--ccC---CCCCEE--
Confidence 5689999999876666553 344443 2211 122211 221 245554
Q ss_pred eeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCC
Q 008840 179 ETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPD 220 (551)
Q Consensus 179 ~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~ 220 (551)
++.| + .+|+|-|+|=.|. .+||.|.|+|.++.
T Consensus 59 -~~tF--~-~~G~Y~Y~C~pH~------~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 59 -TVTV--T-EEGVYGVKCTPHY------GMGMVALIQVGDPP 90 (116)
T ss_pred -EEEe--C-CCEEEEEEcCCCc------cCCCEEEEEECCCC
Confidence 5555 4 7999999999764 58999999999753
No 44
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=96.96 E-value=0.0046 Score=54.84 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=50.8
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCccee
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNE 179 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~ 179 (551)
--+|+|++||+ |+|.|.-.. .+|++.=+...+ +|.-. + ...+|++|
T Consensus 53 PA~v~v~pGDT--Vtw~~~d~~---------------------~Hnv~~~~~~~~---~g~~~--~---~~~~~~s~--- 98 (128)
T COG3794 53 PAEVTVKPGDT--VTWVNTDSV---------------------GHNVTAVGGMDP---EGSGT--L---KAGINESF--- 98 (128)
T ss_pred CcEEEECCCCE--EEEEECCCC---------------------CceEEEeCCCCc---ccccc--c---ccCCCcce---
Confidence 34899999997 667776553 477776555421 22221 1 12345655
Q ss_pred eEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeC
Q 008840 180 TYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRH 218 (551)
Q Consensus 180 ~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~d 218 (551)
++.|. .+|+|-|.|-.| ..+||.|.|+|++
T Consensus 99 ~~Tfe---~~G~Y~Y~C~PH------~~~gM~G~IvV~~ 128 (128)
T COG3794 99 THTFE---TPGEYTYYCTPH------PGMGMKGKIVVGE 128 (128)
T ss_pred EEEec---ccceEEEEeccC------CCCCcEEEEEeCC
Confidence 55553 599999999986 3589999999974
No 45
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.83 E-value=0.0033 Score=69.39 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=56.6
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCccee
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNE 179 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~ 179 (551)
-..|+|++||+|+++++|.-.. .-.+ ||..++.. |.- + .+.||+.-
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~---------------------~DVi--HGF~Ip~~--nI~---~---dv~PG~t~--- 599 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKV---------------------EDLT--HGFAIPNY--GVN---M---EVAPQATA--- 599 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcc---------------------cccc--cceeeccc--Ccc---E---EEcCCceE---
Confidence 4469999999999999994221 1112 55555432 111 1 36688887
Q ss_pred eEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 180 TYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 180 ~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
+..|.++ .+|+|||||...-.. .| .+|.|.++|+
T Consensus 600 svtF~ad-kPGvy~~~CtefCGa-~H--~~M~G~~iVe 633 (635)
T PRK02888 600 SVTFTAD-KPGVYWYYCTWFCHA-LH--MEMRGRMLVE 633 (635)
T ss_pred EEEEEcC-CCEEEEEECCccccc-Cc--ccceEEEEEE
Confidence 8999996 999999999975432 34 5999999998
No 46
>PLN02191 L-ascorbate oxidase
Probab=96.71 E-value=0.13 Score=57.54 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=63.3
Q ss_pred CceEEECCcc-cCceeecC-eEEEEEEEecCCCceEEEEEcCCceEEE-EEcCCCCCCCceEecEEEEccCceEEEEEEc
Q 008840 271 GDVIVVNGKA-WPRMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIH-VGSDSAYLGKPVVTNDTVLAPAEIADVVIDF 347 (551)
Q Consensus 271 gd~~lVNG~~-~P~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~v-ia~DG~~l~~P~~~~~l~l~pgeR~dVlv~~ 347 (551)
...++|||+. .|.|+++. +++++++.|.-......+|. ||....- -..||..- +..-.|.||+.+...+++
T Consensus 42 ~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHw-HGl~~~~~~~~DGv~g-----vtq~pI~PG~s~~Y~f~~ 115 (574)
T PLN02191 42 GAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHW-HGIRQKGSPWADGAAG-----VTQCAINPGETFTYKFTV 115 (574)
T ss_pred eeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEC-CCCCCCCCccccCCCc-----cccCCcCCCCeEEEEEEC
Confidence 3589999995 68999987 89999999997655677888 7854321 12477643 233569999999999998
Q ss_pred CCCCCceEEEecCCCCC
Q 008840 348 SESTSDVAILANDAPYP 364 (551)
Q Consensus 348 ~~~~g~~~~L~~~~~~~ 364 (551)
++. ++|+-.+....+
T Consensus 116 ~~~--GT~wYHsH~~~q 130 (574)
T PLN02191 116 EKP--GTHFYHGHYGMQ 130 (574)
T ss_pred CCC--eEEEEeeCcHHH
Confidence 753 499988875433
No 47
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.63 E-value=0.013 Score=51.20 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=47.7
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCccee
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNE 179 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~ 179 (551)
-..|+|++||+|+ |+|+.... ++++..=+. ...|- ......+|++|
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~--------------------~HnV~s~~~---~~f~s------~~~~~~~G~t~--- 86 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGG--------------------GHNVVSDGD---GDLDE------SERVSEEGTTY--- 86 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCC--------------------CEEEEECCC---CCccc------cccccCCCCEE---
Confidence 5689999999866 66543221 566654110 11110 00013577776
Q ss_pred eEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 180 TYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 180 ~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
++.| + .+|+|-|+|=.|. .+||.|.|+|+
T Consensus 87 s~Tf--~-~~G~Y~Y~C~pH~------~~gM~G~I~V~ 115 (115)
T TIGR03102 87 EHTF--E-EPGIYLYVCVPHE------ALGMKGAVVVE 115 (115)
T ss_pred EEEe--c-CCcEEEEEccCCC------CCCCEEEEEEC
Confidence 6666 3 7999999999874 47999999985
No 48
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=96.53 E-value=0.32 Score=54.49 Aligned_cols=204 Identities=15% Similarity=0.131 Sum_probs=116.5
Q ss_pred ceEEECCcc-cCceeecC-eEEEEEEEecCCCceEEEEEcCCceEEE-EEcCCCCCCCceEecEEEEccCceEEEEEEcC
Q 008840 272 DVIVVNGKA-WPRMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIH-VGSDSAYLGKPVVTNDTVLAPAEIADVVIDFS 348 (551)
Q Consensus 272 d~~lVNG~~-~P~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~v-ia~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~ 348 (551)
..++|||+. .|.|+++. +++++++.|--. ....+|. ||..+.- -..||... ..-.|.||+.+.--++++
T Consensus 49 ~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~-~~ttIHW-HGl~q~~t~w~DGv~~------TQcPI~PG~sftY~F~~~ 120 (596)
T PLN00044 49 EAIGINGQFPGPALNVTTNWNLVVNVRNALD-EPLLLTW-HGVQQRKSAWQDGVGG------TNCAIPAGWNWTYQFQVK 120 (596)
T ss_pred EEEEEcCcCCCCcEEEECCCEEEEEEEeCCC-CCccEEE-CCccCCCCccccCCCC------CcCCcCCCCcEEEEEEeC
Confidence 479999995 79999987 899999999975 4567888 7855432 23688532 346899999999999986
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeecc-------
Q 008840 349 ESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYT------- 421 (551)
Q Consensus 349 ~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~------- 421 (551)
+..| +|+-.+....+...|. --.|.|..+.. . ..| ++..+ ..+..+.|.++-
T Consensus 121 dq~G-T~WYHsH~~~Q~~~Gl--------~GalII~~~~~-~--~~P-----~~~~~----~~e~~i~l~DW~~~~~~~~ 179 (596)
T PLN00044 121 DQVG-SFFYAPSTALHRAAGG--------YGAITINNRDV-I--PIP-----FGFPD----GGDITLFIADWYARDHRAL 179 (596)
T ss_pred CCCc-eeEeeccchhhhhCcC--------eeEEEEcCccc-c--ccc-----ccCCc----ccceEEEecccccCCHHHH
Confidence 4444 8988876544333331 12244443211 0 111 11000 001122222210
Q ss_pred ----c---CCCCcceEEEcccccC---CCC----CC------CcceeeeEEEEeeeeeeee-eccccCceeeeeeeeccC
Q 008840 422 ----S---NTGKPTHLLINAKTLE---DPV----TE------TPKTLDQTELVNLEEFKAC-MNKINDAIKCNLSKHACG 480 (551)
Q Consensus 422 ----~---~~g~~~~~~INg~~f~---~~~----~~------~~~~~~~~~l~n~~~~~~~-~~~~~~~~~~~v~~~~~G 480 (551)
. ..+.+...+|||+.-. ... .. .+.....++|+|....... +..-+|.+ .+.. .+|
T Consensus 180 ~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~m--tVIa-~DG 256 (596)
T PLN00044 180 RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNL--LLVE-AEG 256 (596)
T ss_pred HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEE--EEEE-eCC
Confidence 0 0122344678986321 100 00 1112556888887643221 33445643 3333 366
Q ss_pred CccCCCCcCCCcCccEEeCCCcEEEEEEEEec
Q 008840 481 KKQAVPVHEQGWKNVYKITPGYVTRILVRFSY 512 (551)
Q Consensus 481 ~~~~~~~~e~~wkDTV~v~pg~~v~i~~~f~~ 512 (551)
... ++.-.|++.+.+||++.|+++++.
T Consensus 257 ~~v-----~P~~vd~i~I~~GQRydVLV~a~q 283 (596)
T PLN00044 257 SYT-----SQQNYTNLDIHVGQSYSFLLTMDQ 283 (596)
T ss_pred ccc-----CceeeeeEEEcCCceEEEEEECCC
Confidence 333 234469999999999999999983
No 49
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=96.51 E-value=0.0065 Score=56.34 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=55.6
Q ss_pred CCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCCccee--ccccCCCCC
Q 008840 99 PGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEP-ESDGYAKSWFT--AGFEEKGPT 175 (551)
Q Consensus 99 PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~-~~DG~p~~~~t--~~~i~pG~~ 175 (551)
.-|+|.+++|+++++|+.|.-... ...+++.|....- ..||.+-.++. .-.|.||++
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~~~~--------------------~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R 117 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAGAST--------------------SFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQR 117 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEESSS---------------------BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEE
T ss_pred ccceEEEcCCcEEEEEEEeccCCe--------------------eEEEEeeccceeEeeeccccccccccceEEeeCCeE
Confidence 468999999999999999986642 5678888764322 27887733222 224789998
Q ss_pred cceeeEEEEcCccCceeEEecc
Q 008840 176 WTNETYHYHNMQQPGNTWYHDH 197 (551)
Q Consensus 176 ~~~~~y~f~~~~~~Gt~wYH~H 197 (551)
+ +.-+.+++.+|.||.++.
T Consensus 118 ~---dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 118 Y---DVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp E---EEEEEECSCSSEEEEEEE
T ss_pred E---EEEEEeCCCCCeEEEEEe
Confidence 8 888888766999999994
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.32 E-value=0.069 Score=50.61 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=64.1
Q ss_pred cEEEeecCCCCCCC-CCcEEEEECCCEEEEEEEeCCCCCCCCCC---CCCCCCCCCCCCCCCCeEEeeCCCC--CCCCCC
Q 008840 85 PVFAFGTSSLTASV-PGPTIEALHGIDTYVTWQNHLPPNHILPI---DPTIPTAMPSNKKGVPTVVHLHGGI--DEPESD 158 (551)
Q Consensus 85 ~~~~y~~~~~ng~~-PGPti~v~~Gd~v~v~l~N~L~~~~~~~~---~~~~~~~~~~~~~~~~t~iH~HG~~--~~~~~D 158 (551)
....|| |.. --++|.+-.|-+|.|+|.|.-...|.+-+ ++..+ . .-.+-.+|-- ..+.+
T Consensus 74 ~~~nfn-----Gts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p----~-----~~~i~~DgkIl~~~G~s- 138 (196)
T PF06525_consen 74 NPFNFN-----GTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTP----N-----NPPISSDGKILLYVGAS- 138 (196)
T ss_pred Cceeee-----cccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCC----C-----ccccCCCCceeeeccCC-
Confidence 355665 433 35899999999999999998555443321 11111 0 1111111110 11111
Q ss_pred CCCCcceeccccCCCCCcceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCC
Q 008840 159 GYAKSWFTAGFEEKGPTWTNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHP 219 (551)
Q Consensus 159 G~p~~~~t~~~i~pG~~~~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp 219 (551)
+++ +....|.+|++. .-.|.. -++|.|||=|-.-| |..+||++-|+|.+.
T Consensus 139 --~~~-~~~~GI~~G~s~---~~~~~~-l~aG~YwlvC~ipG----HA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 139 --PGN-YTSNGISSGQSA---SGVYND-LPAGYYWLVCGIPG----HAESGMWGVLIVSSN 188 (196)
T ss_pred --CCc-cccCCccCCcee---eEEEcc-CCCceEEEEccCCC----hhhcCCEEEEEEecC
Confidence 111 122246678876 444544 38999999999876 567999999999954
No 51
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=96.19 E-value=0.0083 Score=52.71 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=33.5
Q ss_pred EeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEEc
Q 008840 497 KITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKLI 550 (551)
Q Consensus 497 ~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V~ 550 (551)
.+.||++.+..++... .+| |.||||.-.|+-.||.+.|.|-
T Consensus 73 ~i~pG~~~~Y~~~~~~-------------~~Gt~wYH~H~~~~~~~GL~G~~iV~ 114 (117)
T PF07732_consen 73 PIAPGESFTYEFTANQ-------------QAGTYWYHSHVHGQQVMGLYGAIIVE 114 (117)
T ss_dssp SBSTTEEEEEEEEESS-------------CSEEEEEEECSTTHHHTTEEEEEEEE
T ss_pred eEEeecceeeeEeeec-------------cccceeEeeCCCchhcCcCEEEEEEc
Confidence 4788999888666651 257 9999999999889999999874
No 52
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=96.17 E-value=0.05 Score=50.56 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=57.3
Q ss_pred cEEEEECCCEEEEEEEeCCCCCCCC---CCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCcc
Q 008840 101 PTIEALHGIDTYVTWQNHLPPNHIL---PIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWT 177 (551)
Q Consensus 101 Pti~v~~Gd~v~v~l~N~L~~~~~~---~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~ 177 (551)
+||.+-.|=.|.|+|.|.-...|-+ +.++..+.. +. .....-.+-+-|...+ ++..+ .+..|.+-
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~-~~-~s~dgkil~~vG~~~s--------~~~~N-Gi~~Gqs~- 152 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRG-PI-WAHTGKIINSTGATTS--------IYYGN-GISSGHSR- 152 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCc-cc-cccCceeEeecccccC--------ccccc-ccccccee-
Confidence 8999999999999999986543322 222211100 00 0000112222222211 11112 24455553
Q ss_pred eeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCC
Q 008840 178 NETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHP 219 (551)
Q Consensus 178 ~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp 219 (551)
.-.|.+ -++|+|||=|-.-| |..+||+|-+||.+.
T Consensus 153 --sg~~~~-~~~G~YwlvCgipG----HAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 --SGWWND-TSAGKYWLVCGITG----HAESGMWAVVIVSSN 187 (195)
T ss_pred --EEEecc-CCCeeEEEEcccCC----hhhcCcEEEEEEecC
Confidence 344555 49999999999876 456999999999853
No 53
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.43 E-value=0.99 Score=50.22 Aligned_cols=204 Identities=16% Similarity=0.249 Sum_probs=119.9
Q ss_pred CceEEECCc-ccCceeecC-eEEEEEEEecCCCceEEEEEcCCceE-EEEEcCCCCCCCceEecEEEEccCceEEEEEEc
Q 008840 271 GDVIVVNGK-AWPRMTVRR-RKYRFRIINASNARFFRFFFTNGLRF-IHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDF 347 (551)
Q Consensus 271 gd~~lVNG~-~~P~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~-~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~ 347 (551)
-..++|||+ +.|.|.+.. ..+.++++|-.. ..+.||. ||... .--..||.++ ..-.|.|||.+---++.
T Consensus 47 ~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~sihW-hGv~q~kn~w~DG~~~------TqCPI~Pg~~~tY~F~v 118 (563)
T KOG1263|consen 47 KQVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPFSIHW-HGVRQRKNPWQDGVYI------TQCPIQPGENFTYRFTV 118 (563)
T ss_pred ceeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-CceEEEe-ccccccCCccccCCcc------ccCCcCCCCeEEEEEEe
Confidence 458999999 579999877 899999999954 7788888 78433 2222399443 45678999999999999
Q ss_pred CCCCCceEEEecCCCCCCCCCCCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCccCceeeEEeeeeccc-----
Q 008840 348 SESTSDVAILANDAPYPYPAGNPVNDANGKVMKFIILKNRETDPWRVPEKLIEYPSADLSAASTTRYIAMYEYTS----- 422 (551)
Q Consensus 348 ~~~~g~~~~L~~~~~~~~~~g~~~~~~~~~vm~f~v~~~~~~~~~~lP~~L~~~~~~~~~~~~~~r~~~l~~~~~----- 422 (551)
++..| +++=.+........| -.=.|+|..... +| .|++ .+..++.+.+.++-.
T Consensus 119 ~~q~G-T~~yh~h~~~~Ra~G--------~~G~liI~~~~~-----~p---~pf~-----~pd~E~~ill~dW~~~~~~~ 176 (563)
T KOG1263|consen 119 KDQIG-TLWYHSHVSWQRATG--------VFGALIINPRPG-----LP---VPFP-----KPDKEFTILLGDWYKNLNHK 176 (563)
T ss_pred CCcce-eEEEeeccccccccC--------ceeEEEEcCCcc-----CC---CCCC-----CCCceeEEEeEeeccccCHH
Confidence 87666 666665543332222 222355543221 11 1111 222334444433211
Q ss_pred -------CCC----CcceEEEcccccCC-C----CCCCcceeeeEEEEeeeeeeee-eccccCceeeeeeeeccCCccCC
Q 008840 423 -------NTG----KPTHLLINAKTLED-P----VTETPKTLDQTELVNLEEFKAC-MNKINDAIKCNLSKHACGKKQAV 485 (551)
Q Consensus 423 -------~~g----~~~~~~INg~~f~~-~----~~~~~~~~~~~~l~n~~~~~~~-~~~~~~~~~~~v~~~~~G~~~~~ 485 (551)
..+ .+-..+|||+.... + .+-.|.....|+|+|..-.... +...+|.+ .+.. .+|.-.
T Consensus 177 ~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~l--tvVe-~Dg~y~-- 251 (563)
T KOG1263|consen 177 NLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQL--TVVE-VDGAYT-- 251 (563)
T ss_pred HHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEE--EEEE-ecceEE--
Confidence 111 13357899998332 1 1112333677888887543222 22334422 2222 355322
Q ss_pred CCcCCCcCccEEeCCCcEEEEEEEEec
Q 008840 486 PVHEQGWKNVYKITPGYVTRILVRFSY 512 (551)
Q Consensus 486 ~~~e~~wkDTV~v~pg~~v~i~~~f~~ 512 (551)
++.--|++.+.|||+..+++..+.
T Consensus 252 ---~p~~~~~l~i~~GQ~~~vLvtadq 275 (563)
T KOG1263|consen 252 ---KPFTTDSLDIHPGQTYSVLLTADQ 275 (563)
T ss_pred ---eeeeeceEEEcCCcEEEEEEeCCC
Confidence 234579999999999999999883
No 54
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=95.33 E-value=0.014 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.8
Q ss_pred CCc-eEEeeccccccccCcccceEE
Q 008840 526 EPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 526 ~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
.+| |.||||+..|...||-+.+.|
T Consensus 123 ~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 123 TAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred CCeEEEEEcCChhHHHCCCEEEEEE
Confidence 457 999999999999999999986
No 55
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=94.99 E-value=0.029 Score=47.62 Aligned_cols=39 Identities=26% Similarity=0.538 Sum_probs=33.6
Q ss_pred CccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 493 KNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 493 kDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
.+++.+.||++.++ .|. .+| |.|||- -|...||.+.+.|
T Consensus 59 ~~~~~~~pG~t~~~--tF~--------------~~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 59 HKDLLNSPGESYEV--TFS--------------TPGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred ccccccCCCCEEEE--EeC--------------CCEEEEEEcC--CccccCCEEEEEE
Confidence 47789999999888 676 346 999998 8999999999986
No 56
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.52 E-value=0.27 Score=44.75 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=43.3
Q ss_pred cCCCcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEEc
Q 008840 488 HEQGWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKLI 550 (551)
Q Consensus 488 ~e~~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V~ 550 (551)
.+..-..++.|.||++.++.+.|. ++| |-+-|=|-.|-|.||-+.|+|-
T Consensus 108 me~d~~~~v~L~PG~s~elvv~ft--------------~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 108 MEHDDPNTVTLAPGKSGELVVVFT--------------GAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred cccCCcceeEeCCCCcEEEEEEec--------------CCccEEEEecCCCcccCCcEEEEEeC
Confidence 344567899999999999999998 567 9999999999999999999873
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=92.05 E-value=0.24 Score=41.92 Aligned_cols=38 Identities=26% Similarity=0.557 Sum_probs=31.9
Q ss_pred ccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 494 NVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 494 DTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
.+..+.+|++..+ .|+ .+| |.|+|- . |...||-+.+.|
T Consensus 60 ~~~~~~~G~~~~~--tF~--------------~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 60 SSPLLAPGETYSV--TFT--------------KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp EEEEBSTTEEEEE--EEE--------------SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred cceecCCCCEEEE--EeC--------------CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 5778899999888 565 346 999999 5 999999999887
No 58
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=86.20 E-value=7.5 Score=31.74 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=38.9
Q ss_pred EEEEEEEecCCCceEEEEEcCCceEEEEE--cCCCCCC-------CceEecEEEEccCceEEEEEEcCCCC--CceEEEe
Q 008840 290 KYRFRIINASNARFFRFFFTNGLRFIHVG--SDSAYLG-------KPVVTNDTVLAPAEIADVVIDFSEST--SDVAILA 358 (551)
Q Consensus 290 ~~RlRllNas~~~~~~l~l~~g~~~~via--~DG~~l~-------~P~~~~~l~l~pgeR~dVlv~~~~~~--g~~~~L~ 358 (551)
...|++.|.|.. ...|.+..|+.+.++- .+|..+= --.......|.|||....-...+... +++|+|.
T Consensus 3 ~~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 467889999954 4677777777655444 4554431 01235689999999999988888765 5688875
No 59
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=85.56 E-value=6.7 Score=35.92 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=65.4
Q ss_pred CCCCcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCc
Q 008840 97 SVPGPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTW 176 (551)
Q Consensus 97 ~~PGPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~ 176 (551)
.+++-.+.++.|++++..+.|.-.-.|.+-.+.+- ..-..-.|....+ .+++.-.+.+ .+.||++-
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~----------~~~~~~~~~~~~~-Dme~d~~~~v---~L~PG~s~ 124 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPD----------KNLEHVTHMILAD-DMEHDDPNTV---TLAPGKSG 124 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCcc----------ccchhHHHhhhCC-ccccCCccee---EeCCCCcE
Confidence 46788899999999999999986655443322100 0111112222222 3334222223 47899998
Q ss_pred ceeeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 177 TNETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 177 ~~~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
+..+... .+|.|-.-|-.-| |..+||.|-|.|.
T Consensus 125 ---elvv~ft-~~g~ye~~C~iPG----Hy~AGM~g~itV~ 157 (158)
T COG4454 125 ---ELVVVFT-GAGKYEFACNIPG----HYEAGMVGEITVS 157 (158)
T ss_pred ---EEEEEec-CCccEEEEecCCC----cccCCcEEEEEeC
Confidence 8888884 8999999999877 4569999999886
No 60
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=82.84 E-value=8.5 Score=34.01 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=29.7
Q ss_pred ccCCCCCcceeeEEEEcCc-cCce-eEEeccCCCchhhhhhccceEEEE
Q 008840 169 FEEKGPTWTNETYHYHNMQ-QPGN-TWYHDHTMGLTRVNLLAGLIGAYI 215 (551)
Q Consensus 169 ~i~pG~~~~~~~y~f~~~~-~~Gt-~wYH~H~~g~t~~qv~~GL~G~~i 215 (551)
.|.+||+. +..|.+.. ++|+ |-|-|-+-|. ++.|.|.+.
T Consensus 84 liggGes~---svtF~~~~l~~g~~Y~f~CSFPGH-----~~~MkG~l~ 124 (125)
T TIGR02695 84 VIGGGEKT---SVTFDVSKLSAGEDYTFFCSFPGH-----WAMMRGTVK 124 (125)
T ss_pred ccCCCceE---EEEEECCCCCCCCcceEEEcCCCc-----HHhceEEEe
Confidence 47889988 88898742 5776 9999998764 356888765
No 61
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=81.80 E-value=9.4 Score=33.55 Aligned_cols=75 Identities=9% Similarity=-0.038 Sum_probs=48.0
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCccee
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNE 179 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~ 179 (551)
.+.|.+..|++|++++++.-- -++...-++. +.. .+.||..-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV----------------------iHsf~ip~~~------------~k~-d~~PG~~~--- 86 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV----------------------IHSFWIPELG------------IKM-DAIPGRTN--- 86 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS-----------------------EEEEETTCT------------EEE-EEBTTCEE---
T ss_pred cceecccccceEeEEEEcCCc----------------------cccccccccC------------ccc-ccccccce---
Confidence 579999999999999999522 2444433322 111 24577766
Q ss_pred eEEEEcCccCceeEEeccCCCchhhhhhccceEEEEE
Q 008840 180 TYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYIL 216 (551)
Q Consensus 180 ~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV 216 (551)
...|.++ .+|+|++.|...--.. | +-|.|-++|
T Consensus 87 ~~~~~~~-~~G~y~~~C~e~CG~g-H--~~M~~~v~V 119 (120)
T PF00116_consen 87 SVTFTPD-KPGTYYGQCAEYCGAG-H--SFMPGKVIV 119 (120)
T ss_dssp EEEEEES-SSEEEEEEE-SSSSTT-G--GG-EEEEEE
T ss_pred eeeeeec-cCCcEEEcCccccCcC-c--CCCeEEEEE
Confidence 7778885 9999999998643222 2 556666655
No 62
>PRK02710 plastocyanin; Provisional
Probab=77.48 E-value=2.9 Score=36.64 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=29.8
Q ss_pred EEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 496 YKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 496 V~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
..+.||++.++ .|. .+| |.|+|= -|...||-+.+.|
T Consensus 82 ~~~~pg~t~~~--tF~--------------~~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 82 LAFAPGESWEE--TFS--------------EAGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred cccCCCCEEEE--Eec--------------CCEEEEEEcC--CCccCCcEEEEEE
Confidence 45789999886 666 357 999997 8999999999987
No 63
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=77.15 E-value=11 Score=36.13 Aligned_cols=79 Identities=9% Similarity=-0.018 Sum_probs=52.9
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCccee
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNE 179 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~ 179 (551)
...|.+..|++|++++++. -.+ ||..++.. |. .. .+.||..-
T Consensus 116 ~~~l~vp~g~~v~~~~ts~-------------------------DV~--Hsf~ip~~--~~-----k~-da~PG~~~--- 157 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK-------------------------DVI--HSFWVPEL--GG-----KI-DAIPGQYN--- 157 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC-------------------------chh--hccccccc--Cc-----eE-EecCCcEE---
Confidence 4589999999999999884 222 55555432 11 11 24467655
Q ss_pred eEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCC
Q 008840 180 TYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPD 220 (551)
Q Consensus 180 ~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~ 220 (551)
...|.++ ++|+|...|..---.. .+.|.+-++|.+++
T Consensus 158 ~~~~~~~-~~G~y~~~c~e~cG~~---h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 158 ALWFNAD-EPGVYYGYCAELCGAG---HSLMLFKVVVVERE 194 (201)
T ss_pred EEEEEeC-CCEEEEEEehhhCCcC---ccCCeEEEEEECHH
Confidence 6778885 8999999888632111 27899999988543
No 64
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=67.14 E-value=31 Score=34.42 Aligned_cols=79 Identities=11% Similarity=-0.128 Sum_probs=54.3
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCccee
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNE 179 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~ 179 (551)
...|.+..|.+|+++++-.- + .||..++.- |. .. .+.||...
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D-------------------------V--iHsF~IP~l--~~-----k~-d~iPG~~~--- 177 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD-------------------------V--IHSFWIPQL--GG-----KI-DAIPGMTT--- 177 (247)
T ss_pred cceEEEeCCCeEEEEEEech-------------------------h--ceeEEecCC--Cc-----ee-eecCCceE---
Confidence 48999999999999997642 1 234444332 11 11 24477666
Q ss_pred eEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCC
Q 008840 180 TYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPD 220 (551)
Q Consensus 180 ~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~ 220 (551)
+..+.++ ++|+|.-+|+-.--+. -+.|.|.++|.+++
T Consensus 178 ~~~~~~~-~~G~Y~g~Cae~CG~g---H~~M~~~v~vvs~~ 214 (247)
T COG1622 178 ELWLTAN-KPGTYRGICAEYCGPG---HSFMRFKVIVVSQE 214 (247)
T ss_pred EEEEecC-CCeEEEEEcHhhcCCC---cccceEEEEEEcHH
Confidence 7888885 9999999999643322 37899999999654
No 65
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=65.04 E-value=8.8 Score=33.59 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.9
Q ss_pred CCc-eEEeeccccccccCcccceEEcC
Q 008840 526 EPG-YVYHCHILDHEDNIMMRPLKLIK 551 (551)
Q Consensus 526 ~pg-~~~HCHiL~HED~GMM~~~~V~~ 551 (551)
.+| |-|+|= .|...||-+.+.|-+
T Consensus 64 ~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 64 EEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCEEEEEEcC--CCccCCCEEEEEECC
Confidence 457 999997 999999999999853
No 66
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=64.84 E-value=8.9 Score=32.49 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=19.6
Q ss_pred EEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccce
Q 008840 496 YKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPL 547 (551)
Q Consensus 496 V~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~ 547 (551)
..+.||++.++.+... .|| |-|||- .|.+ |=+.+
T Consensus 68 ~~l~~g~~~~~~f~~~--------------~~G~y~~~C~--~~~~--m~G~l 102 (104)
T PF13473_consen 68 KVLPPGETATVTFTPL--------------KPGEYEFYCT--MHPN--MKGTL 102 (104)
T ss_dssp EEE-TT-EEEEEEEE---------------S-EEEEEB-S--SS-T--TB---
T ss_pred EEECCCCEEEEEEcCC--------------CCEEEEEEcC--CCCc--ceecc
Confidence 7889999999977655 567 999999 5554 44443
No 67
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=62.80 E-value=9.8 Score=33.25 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=28.7
Q ss_pred EeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 497 KITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 497 ~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
...+|++.++ .|+ .+| |-|+|= .|...||-+.+.|
T Consensus 79 ~~~~G~t~s~--Tf~--------------~~G~Y~Y~C~--pH~~~gM~G~I~V 114 (115)
T TIGR03102 79 VSEEGTTYEH--TFE--------------EPGIYLYVCV--PHEALGMKGAVVV 114 (115)
T ss_pred ccCCCCEEEE--Eec--------------CCcEEEEEcc--CCCCCCCEEEEEE
Confidence 4567888887 566 457 999997 8999999999887
No 68
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=54.80 E-value=71 Score=33.88 Aligned_cols=76 Identities=17% Similarity=0.034 Sum_probs=48.2
Q ss_pred CcEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeC-CCCCCCCCCCCCCcceeccccCCCCCcce
Q 008840 100 GPTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLH-GGIDEPESDGYAKSWFTAGFEEKGPTWTN 178 (551)
Q Consensus 100 GPti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~H-G~~~~~~~DG~p~~~~t~~~i~pG~~~~~ 178 (551)
-.++.++.|+ +.+.++|.-.. ++..-.- |..+- |- ...|.||.+.
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~---------------------~~Efe~~~~~~vv----~e------~EnIaPG~s~-- 88 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQK---------------------ALEWEILKGVMVV----EE------RENIAPGFSQ-- 88 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCC---------------------cceEEeecccccc----cc------ccccCCCCce--
Confidence 4578899996 88999998665 2221110 11110 00 1147789887
Q ss_pred eeEEEEcCccCceeEEeccCCCchhhhhhccceEEEEEeCCC
Q 008840 179 ETYHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILRHPD 220 (551)
Q Consensus 179 ~~y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~dp~ 220 (551)
.+.++. .+|+|-|+|-.|+ .+.|.++|.++.
T Consensus 89 -~l~~~L--~pGtY~~~C~~~~--------~~~g~l~Vtg~~ 119 (375)
T PRK10378 89 -KMTANL--QPGEYDMTCGLLT--------NPKGKLIVKGEA 119 (375)
T ss_pred -EEEEec--CCceEEeecCcCC--------CCCceEEEeCCC
Confidence 676666 6999999995542 347889998653
No 69
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=52.69 E-value=1.4e+02 Score=31.42 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=11.9
Q ss_pred ccCCCCCcceeeEEEEc
Q 008840 169 FEEKGPTWTNETYHYHN 185 (551)
Q Consensus 169 ~i~pG~~~~~~~y~f~~ 185 (551)
+|.|||+. +.+..+
T Consensus 339 pI~PGETr---~v~v~a 352 (399)
T TIGR03079 339 AIAPGETV---EVKMEA 352 (399)
T ss_pred CcCCCcce---EEEEEE
Confidence 59999998 888777
No 70
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=48.34 E-value=25 Score=31.35 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=32.6
Q ss_pred CcCccEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 491 GWKNVYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 491 ~wkDTV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
.|-+++...+|++.+. .|+ .+| |.|.| ..|.-.||-+.+.|
T Consensus 85 ~g~~~~~~~~~~s~~~--Tfe--------------~~G~Y~Y~C--~PH~~~gM~G~IvV 126 (128)
T COG3794 85 EGSGTLKAGINESFTH--TFE--------------TPGEYTYYC--TPHPGMGMKGKIVV 126 (128)
T ss_pred ccccccccCCCcceEE--Eec--------------ccceEEEEe--ccCCCCCcEEEEEe
Confidence 4577777777888888 555 357 99999 56999999998877
No 71
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=47.93 E-value=29 Score=37.19 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=45.8
Q ss_pred cEEEEECCCEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcceeccccCCCCCcceee
Q 008840 101 PTIEALHGIDTYVTWQNHLPPNHILPIDPTIPTAMPSNKKGVPTVVHLHGGIDEPESDGYAKSWFTAGFEEKGPTWTNET 180 (551)
Q Consensus 101 Pti~v~~Gd~v~v~l~N~L~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~pG~~~~~~~ 180 (551)
-++.|++||.|.+.++|- .+ ..-=.||...+.. |+. + .+.|-++- .
T Consensus 558 ~ef~Vkq~DEVt~l~tnl-d~----------------------Ved~thgfv~p~~--~v~---~---~v~pq~ta---s 603 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNL-DE----------------------VEDLTHGFVIPNY--GVN---M---EVKPQRTA---S 603 (637)
T ss_pred EEEEEecCcEEEEEeccc-ce----------------------eccccceeeeccC--ceE---E---EEccCCce---E
Confidence 467888888888888774 21 1222344433322 211 2 24455544 7
Q ss_pred EEEEcCccCceeEEeccCCCchhhhhhccceEEEEEe
Q 008840 181 YHYHNMQQPGNTWYHDHTMGLTRVNLLAGLIGAYILR 217 (551)
Q Consensus 181 y~f~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~~iV~ 217 (551)
|.|.++ -+|.+||-|--.- .-+-+-|+|-+|||
T Consensus 604 vtf~a~-kpgv~w~ycs~fc---halh~em~~rmlve 636 (637)
T COG4263 604 VTFYAD-KPGVAWYYCSWFC---HALHMEMAGRMLVE 636 (637)
T ss_pred EEEEcc-CCeeeehhhhhHH---HHHHHhhccceeec
Confidence 888886 8999998764311 11335677888886
No 72
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=47.42 E-value=21 Score=28.90 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=23.1
Q ss_pred EeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeeccccccccCcccceEE
Q 008840 497 KITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDNIMMRPLKL 549 (551)
Q Consensus 497 ~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~GMM~~~~V 549 (551)
.+.+|++.++ .|+ .|| |.|||=+ |. .|-+.+.|
T Consensus 49 ~~~~g~~~~~--tf~--------------~~G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 49 MMKKEQAYSL--TFT--------------EAGTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred ccCCCCEEEE--ECC--------------CCEEEEEEcCC--CC--CCeEEEEE
Confidence 3578888776 666 567 9999976 66 36555554
No 73
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=40.84 E-value=2.8e+02 Score=29.27 Aligned_cols=14 Identities=21% Similarity=0.029 Sum_probs=9.5
Q ss_pred ccCCCCCcceeeEEEEc
Q 008840 169 FEEKGPTWTNETYHYHN 185 (551)
Q Consensus 169 ~i~pG~~~~~~~y~f~~ 185 (551)
+|+|||+. +.+..+
T Consensus 320 pI~PGETr---tl~V~a 333 (381)
T PF04744_consen 320 PIAPGETR---TLTVEA 333 (381)
T ss_dssp -B-TT-EE---EEEEEE
T ss_pred CcCCCceE---EEEEEe
Confidence 79999998 888877
No 74
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=39.42 E-value=1.3e+02 Score=26.30 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=40.5
Q ss_pred ceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCC
Q 008840 283 RMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSEST 351 (551)
Q Consensus 283 ~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~ 351 (551)
++.+.. +.|+|.+...+. .+|.| ||. .+|..++..-..+.....+.|..|+++.|.|++....
T Consensus 51 ~i~~~~~G~y~f~~~~~~~---~~l~I-dg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~ 114 (136)
T smart00758 51 YLKPPEDGEYTFSITSDDG---ARLWI-DGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAG 114 (136)
T ss_pred EEECCCCccEEEEEEcCCc---EEEEE-CCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCC
Confidence 455554 789999854333 46677 674 3454444322123344579999999999999887654
No 75
>PRK02888 nitrous-oxide reductase; Validated
Probab=39.25 E-value=36 Score=38.39 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=31.2
Q ss_pred cEEeCCCcEEEEEEEEeccccCCCCCCCCCCCCc-eEEeecccccccc-CcccceEEc
Q 008840 495 VYKITPGYVTRILVRFSYVHANASYPFDATAEPG-YVYHCHILDHEDN-IMMRPLKLI 550 (551)
Q Consensus 495 TV~v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg-~~~HCHiL~HED~-GMM~~~~V~ 550 (551)
-+.+.||++..+.|+++ .|| |.|||...-|.-+ +|++.+.|.
T Consensus 590 ~~dv~PG~t~svtF~ad--------------kPGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 590 NMEVAPQATASVTFTAD--------------KPGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred cEEEcCCceEEEEEEcC--------------CCEEEEEECCcccccCcccceEEEEEE
Confidence 35678999999988877 678 9999998655433 666666663
No 76
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=39.09 E-value=2.5e+02 Score=24.07 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=13.0
Q ss_pred EEEEEecCCC-ceEEEEEcCC
Q 008840 292 RFRIINASNA-RFFRFFFTNG 311 (551)
Q Consensus 292 RlRllNas~~-~~~~l~l~~g 311 (551)
++|++|++.. ..+.+.+ ||
T Consensus 3 ~Vr~~hasp~~~~vdv~~-dg 22 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYV-DG 22 (122)
T ss_pred EEEEEEcCCCCccEEEEE-CC
Confidence 6788888854 5677777 44
No 77
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=38.70 E-value=2.1e+02 Score=25.05 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=41.9
Q ss_pred ceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCC------CCceEecEEEEccCceEEEEEEcCCCC
Q 008840 283 RMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYL------GKPVVTNDTVLAPAEIADVVIDFSEST 351 (551)
Q Consensus 283 ~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l------~~P~~~~~l~l~pgeR~dVlv~~~~~~ 351 (551)
+|.+.. +.|+|++-.-+ ..+|.| ||.. +|..++..- ..+.....+.|..|++++|-|.+.+..
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~i-dg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWI-DGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEE-TTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EEecccCceEEEEEEecc---cEEEEE-CCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 566666 89999998443 356667 6743 466665432 124556789999999999999877653
No 78
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.78 E-value=32 Score=29.02 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=3.6
Q ss_pred ChhhHHHHHH
Q 008840 1 MALMERILVI 10 (551)
Q Consensus 1 ~~~~~~~~~~ 10 (551)
|+ .+.+|+|
T Consensus 1 Ma-SK~~llL 9 (95)
T PF07172_consen 1 MA-SKAFLLL 9 (95)
T ss_pred Cc-hhHHHHH
Confidence 44 4443333
No 79
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=30.73 E-value=1.3e+02 Score=28.78 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.8
Q ss_pred Cc-eEEeeccccccccCcccceEEc
Q 008840 527 PG-YVYHCHILDHEDNIMMRPLKLI 550 (551)
Q Consensus 527 pg-~~~HCHiL~HED~GMM~~~~V~ 550 (551)
+| |.+=|=|.-|...||-..+.|-
T Consensus 162 aG~YwlvC~ipGHA~sGMw~~LiVs 186 (196)
T PF06525_consen 162 AGYYWLVCGIPGHAESGMWGVLIVS 186 (196)
T ss_pred CceEEEEccCCChhhcCCEEEEEEe
Confidence 46 9999999999999999998874
No 80
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=30.62 E-value=2e+02 Score=25.47 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=44.3
Q ss_pred EEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCC
Q 008840 290 KYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTS 352 (551)
Q Consensus 290 ~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g 352 (551)
..-|-|-|++..+.+.+ ....-...||.++ +.+-.+.+.|+|=+..+++|+-++..|
T Consensus 26 t~tLSiRNtd~~~~i~i-----~~v~Yydt~G~lv-r~yl~~Pi~L~Pl~t~~~vV~e~D~~G 82 (125)
T PF11322_consen 26 TATLSIRNTDPTDPIYI-----TSVDYYDTDGKLV-RSYLDKPIYLKPLATTEFVVEESDTSG 82 (125)
T ss_pred EEEEEEEcCCCCCCEEE-----EEEEEECCCCeEh-HHhcCCCeEcCCCceEEEEEecccCCC
Confidence 34555668888887666 2456788999988 666677899999999999999887654
No 81
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=30.56 E-value=2.4e+02 Score=24.72 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=40.7
Q ss_pred eEEEEEEEecCCCceEEEEEcCC-ceEEEEEcCCCCCCCceE-----ecEEEEccCceEEEEEEcCCC
Q 008840 289 RKYRFRIINASNARFFRFFFTNG-LRFIHVGSDSAYLGKPVV-----TNDTVLAPAEIADVVIDFSES 350 (551)
Q Consensus 289 ~~~RlRllNas~~~~~~l~l~~g-~~~~via~DG~~l~~P~~-----~~~l~l~pgeR~dVlv~~~~~ 350 (551)
+.+++.|-|.|... ..| .| -.+..++.||..+..+.. ...+.|.||+++-..|.....
T Consensus 20 ~~~~l~~tN~s~~~-C~l---~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~~ 83 (131)
T PF14016_consen 20 RHATLTFTNTSDTP-CTL---YGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSNV 83 (131)
T ss_pred cEEEEEEEECCCCc-EEe---ccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEecC
Confidence 58899999998543 344 33 235566888886643332 357999999999988877764
No 82
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=30.35 E-value=97 Score=27.48 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=49.2
Q ss_pred ceeecC--eEEEEEEEecCCCc----eEEEEEcCCceEEEE-------EcCCCCCCCc--e-EecEEEEccCceEEEEEE
Q 008840 283 RMTVRR--RKYRFRIINASNAR----FFRFFFTNGLRFIHV-------GSDSAYLGKP--V-VTNDTVLAPAEIADVVID 346 (551)
Q Consensus 283 ~~~v~~--~~~RlRllNas~~~----~~~l~l~~g~~~~vi-------a~DG~~l~~P--~-~~~~l~l~pgeR~dVlv~ 346 (551)
.|+|++ +.+.+.|-|.+... -.++-|...-.+.-| +.|-+|++.. . -..+=+|++||...|-++
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF~ 96 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTFD 96 (125)
T ss_pred EEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEEE
Confidence 567765 57999999987532 234444333333333 3355677542 2 235678999999999999
Q ss_pred cCC-CCCceEEEecCC
Q 008840 347 FSE-STSDVAILANDA 361 (551)
Q Consensus 347 ~~~-~~g~~~~L~~~~ 361 (551)
.+. .+|+.|...-..
T Consensus 97 ~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 97 VSKLSAGEDYTFFCSF 112 (125)
T ss_pred CCCCCCCCcceEEEcC
Confidence 875 345567666543
No 83
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=29.95 E-value=4.2e+02 Score=23.90 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=46.3
Q ss_pred EECCcccC-ceeecC-eEEEEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCCCC
Q 008840 275 VVNGKAWP-RMTVRR-RKYRFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSESTS 352 (551)
Q Consensus 275 lVNG~~~P-~~~v~~-~~~RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~~g 352 (551)
-.||+..| .++|+. ..++|++.|.+.. ...+.+ +++ | -...|.||++..+-+.+.++
T Consensus 53 a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i-~~~--------g---------is~~I~pGet~TitF~adKp-- 111 (135)
T TIGR03096 53 AFNVLNEPEALVVKKGTPVKVTVENKSPI-SEGFSI-DAY--------G---------ISEVIKAGETKTISFKADKA-- 111 (135)
T ss_pred eeeeEEcCCEEEECCCCEEEEEEEeCCCC-ccceEE-CCC--------C---------cceEECCCCeEEEEEECCCC--
Confidence 66888877 478887 7999999998853 222333 222 1 15778999999999988876
Q ss_pred ceEEEecC
Q 008840 353 DVAILAND 360 (551)
Q Consensus 353 ~~~~L~~~ 360 (551)
++|.....
T Consensus 112 G~Y~y~C~ 119 (135)
T TIGR03096 112 GAFTIWCQ 119 (135)
T ss_pred EEEEEeCC
Confidence 37877654
No 84
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=26.61 E-value=45 Score=29.93 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 008840 2 ALMERILVIHLMFFAL 17 (551)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (551)
|++.|+|++|+++++|
T Consensus 1 MmtcRLLCalLvlaLc 16 (143)
T PF01456_consen 1 MMTCRLLCALLVLALC 16 (143)
T ss_pred CchHHHHHHHHHHHHH
Confidence 3467888866665553
No 85
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=26.00 E-value=61 Score=32.69 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=33.5
Q ss_pred EEECCcccCceeecC-eEEEEEEEecCCCceEEEE-EcCCceEEE
Q 008840 274 IVVNGKAWPRMTVRR-RKYRFRIINASNARFFRFF-FTNGLRFIH 316 (551)
Q Consensus 274 ~lVNG~~~P~~~v~~-~~~RlRllNas~~~~~~l~-l~~g~~~~v 316 (551)
..+|-..||.++-.+ ++||+.++|-+......+. + ++.+|-|
T Consensus 157 hvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~t~l-~~~pfpv 200 (356)
T COG5212 157 HVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTLTRL-TGEPFPV 200 (356)
T ss_pred HhhcccccCCcccccCceEEEEEeChhHeeeeeeeee-cceeeec
Confidence 568999999999988 9999999999976655554 4 4666655
No 86
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=25.94 E-value=2.1e+02 Score=24.48 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=30.1
Q ss_pred EEEEEEEecCCC-ceEEEEEcCCc-eEEEEEcCCCCCCCceEecEEEEccCceEEEEEEcCCC
Q 008840 290 KYRFRIINASNA-RFFRFFFTNGL-RFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDFSES 350 (551)
Q Consensus 290 ~~RlRllNas~~-~~~~l~l~~g~-~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~~~~ 350 (551)
.|+++|+|-+.. +.|.|.+. |. .+.+. ...+.+.|+||+..++-|-...+
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~-g~~~~~l~----------~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVE-GLPGAELQ----------GPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEE-S-SS-EE-----------ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEe-cCCCeEEE----------CCCcceEECCCCEEEEEEEEEEC
Confidence 899999999955 48888884 52 23331 12357889999998887765543
No 87
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=23.79 E-value=84 Score=22.75 Aligned_cols=32 Identities=22% Similarity=0.521 Sum_probs=24.1
Q ss_pred eCCCcEEEEEEEEeccccCCCCCCCCCCCCceEEeeccccccccC
Q 008840 498 ITPGYVTRILVRFSYVHANASYPFDATAEPGYVYHCHILDHEDNI 542 (551)
Q Consensus 498 v~pg~~v~i~~~f~~~~~~~~~p~~~~~~pg~~~HCHiL~HED~G 542 (551)
.+.|+.+.+.+++.. -|.+=+||..+.|.+..
T Consensus 15 ~~~g~~~~~~v~YE~-------------lp~~C~~C~~~gH~~~~ 46 (49)
T PF14392_consen 15 FPEGESFWVKVKYER-------------LPRFCFHCGRIGHSDKE 46 (49)
T ss_pred eCCCcEEEEEEEECC-------------cChhhcCCCCcCcCHhH
Confidence 345788888777762 34589999999998753
No 88
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=22.26 E-value=2.9e+02 Score=19.46 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=24.6
Q ss_pred EEEEEecCCCceEEEEEcCCceEEEEEcCCCCCCCceEecEEEEccCceEEEEEEc
Q 008840 292 RFRIINASNARFFRFFFTNGLRFIHVGSDSAYLGKPVVTNDTVLAPAEIADVVIDF 347 (551)
Q Consensus 292 RlRllNas~~~~~~l~l~~g~~~~via~DG~~l~~P~~~~~l~l~pgeR~dVlv~~ 347 (551)
.|+|-|.|.....--.+.-.+.-..+. .+.-.|.|||...|-|.+
T Consensus 1 ~F~~~N~g~~~L~I~~v~tsCgCt~~~-----------~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 1 TFEFTNTGDSPLVITDVQTSCGCTTAE-----------YSKKPIAPGESGKIKVTY 45 (45)
T ss_pred CEEEEECCCCcEEEEEeeEccCCEEee-----------CCcceECCCCEEEEEEEC
Confidence 377888886652222221122233322 222348999999888764
No 89
>PF07696 7TMR-DISMED2: 7TMR-DISM extracellular 2; InterPro: IPR011622 This entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins []. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives [].; PDB: 2XBZ_B 3JYB_A.
Probab=21.58 E-value=3.6e+02 Score=23.25 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=28.7
Q ss_pred eEEEEEEEecC-CCceEEEEEc----CCceEEEEEcCCCCCC----------------CceEecEEEEccCceEEEEEEc
Q 008840 289 RKYRFRIINAS-NARFFRFFFT----NGLRFIHVGSDSAYLG----------------KPVVTNDTVLAPAEIADVVIDF 347 (551)
Q Consensus 289 ~~~RlRllNas-~~~~~~l~l~----~g~~~~via~DG~~l~----------------~P~~~~~l~l~pgeR~dVlv~~ 347 (551)
=|.||+|-|.+ ....+.|.+. |...++++. +|+... ....+=.+.|.||+...+.+.+
T Consensus 48 ~Wlr~~l~N~~~~~~~~~L~l~~~~ld~v~~y~~~-~~~~~~~~~~G~~~~~~~r~~~~~~~~~~~~l~~~~~~~~yirv 126 (141)
T PF07696_consen 48 YWLRFTLQNPSSEQRRWVLELDNPYLDHVDLYLPD-NGGLWRHYRSGDRRPFSQRPIPYRQPVFPLTLPPGETYTLYIRV 126 (141)
T ss_dssp EEEEEEE------SS-EEEEEE-TT-SEEEEEEEC-TTCEEEEEEESTTS-S---SSTTTEEEEEE---SSS-EEEEEEE
T ss_pred EEEEEEEEeecCCCccEEEEECCCCCCEEEEEEEc-CCCEEEEEeccCCCCcccccccCCceEEEEEeCCCCEEEEEEEE
Confidence 59999998875 3335566663 234566663 333220 1111224667788888888877
Q ss_pred CCC
Q 008840 348 SES 350 (551)
Q Consensus 348 ~~~ 350 (551)
...
T Consensus 127 ~s~ 129 (141)
T PF07696_consen 127 KSN 129 (141)
T ss_dssp EES
T ss_pred EcC
Confidence 653
No 90
>PRK09810 entericidin A; Provisional
Probab=20.95 E-value=93 Score=21.97 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHh
Q 008840 4 MERILVIHLMFFALS 18 (551)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (551)
|++++.+++++.+.+
T Consensus 2 Mkk~~~l~~~~~~~L 16 (41)
T PRK09810 2 MKRLIVLVLLASTLL 16 (41)
T ss_pred hHHHHHHHHHHHHHH
Confidence 555544444444344
No 91
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=20.91 E-value=5.5e+02 Score=22.38 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=14.9
Q ss_pred EEECCCEEEEEEEeCCCC
Q 008840 104 EALHGIDTYVTWQNHLPP 121 (551)
Q Consensus 104 ~v~~Gd~v~v~l~N~L~~ 121 (551)
.+++||+|+++|.+.-..
T Consensus 88 ~lk~G~~V~F~~~~~~~~ 105 (115)
T PRK09838 88 EIKTGDKVAFNFVQQGNL 105 (115)
T ss_pred cCCCCCEEEEEEEEcCCc
Confidence 579999999999986544
No 92
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=20.32 E-value=1.3e+02 Score=25.90 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=6.9
Q ss_pred ChhhHHHHHHH
Q 008840 1 MALMERILVIH 11 (551)
Q Consensus 1 ~~~~~~~~~~~ 11 (551)
|+.||+++.++
T Consensus 2 ~~~mk~~~~l~ 12 (104)
T PRK14864 2 NMVMRRFASLL 12 (104)
T ss_pred chHHHHHHHHH
Confidence 66788854443
No 93
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=20.23 E-value=21 Score=32.02 Aligned_cols=19 Identities=53% Similarity=0.894 Sum_probs=14.8
Q ss_pred CCceEEeeccccccccCccc
Q 008840 526 EPGYVYHCHILDHEDNIMMR 545 (551)
Q Consensus 526 ~pg~~~HCHiL~HED~GMM~ 545 (551)
.|-||-|| ||+|-|.|-.+
T Consensus 151 ~payVaHc-iLeH~dlG~a~ 169 (173)
T PF15470_consen 151 HPAYVAHC-ILEHPDLGKAR 169 (173)
T ss_pred chHHHHHH-hhcCCCccccc
Confidence 44689999 89999988543
Done!