BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008842
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/521 (44%), Positives = 331/521 (63%), Gaps = 19/521 (3%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+ +SCL V N T+F S +++ ++ L+ SIQN F +S + KP AIILP
Sbjct: 7 DLLSCLTFNGVRNHTVF-------SADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 59
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
S ++L+N++ C R S +R+R GGHSYEG S ++SD F+++D+ NLN++S+DLESET
Sbjct: 60 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLS-YTSD-TPFILIDLMNLNRVSIDLESET 117
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV+ G+TLGE Y AI+E+S+ GF+AG CPTV ++SRKYGLAADNVVD
Sbjct: 118 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVD 177
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
A+L+DANG +L+R+AMGEDVFWAIR VWG +YAWKIKLL VP V+ F +++ +
Sbjct: 178 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 237
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
L++KWQ VA L +DF LS GA + K + L T GF+ G K A + +
Sbjct: 238 DEATSLLHKWQFVAEELEEDFTLSVLGGA---DEKQVWL--TMLGFHFGLKTVAKSTFDL 292
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNYFKAKSDYVRTPIS 388
FPEL + E+D EMSW ES + +GL T+S L R+ + D+ FK K D + P+
Sbjct: 293 LFPELGLVEEDYLEMSWGESFAYLAGL---ETVSQLNNRFLKFDERAFKTKVDLTKEPLP 349
Query: 389 VTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
LE L KEP G++ + +GG M KI S+ FPHR+G ++YIVAW +
Sbjct: 350 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 409
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGE 508
K ++DW+ Y M PFVS PR Y+N++D+DLG ++ N + + +A+EI+R WGE
Sbjct: 410 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGE 468
Query: 509 KYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKGKS 549
YFL NY+RL++AKT+IDPNN+F++ Q IPP + + K+
Sbjct: 469 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFDYLEKT 509
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/521 (44%), Positives = 331/521 (63%), Gaps = 19/521 (3%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+ +SCL V N T+F S +++ ++ L+ SIQN F +S + KP AIILP
Sbjct: 7 DLLSCLTFNGVRNHTVF-------SADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 59
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
S ++L+N++ C R S +R+R GGHSYEG S ++SD F+++D+ NLN++S+DLESET
Sbjct: 60 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLS-YTSD-TPFILIDLMNLNRVSIDLESET 117
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV+ G+TLGE Y AI+E+S+ GF+AG CPTV ++SRKYGLAADNVVD
Sbjct: 118 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVD 177
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
A+L+DANG +L+R+AMGEDVFWAIR VWG +YAWKIKLL VP V+ F +++ +
Sbjct: 178 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 237
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
L++KWQ VA L +DF LS GA + K + L T GF+ G K A + +
Sbjct: 238 DEATSLLHKWQFVAEELEEDFTLSVLGGA---DEKQVWL--TMLGFHFGLKTVAKSTFDL 292
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNYFKAKSDYVRTPIS 388
FPEL + E+D EMSW ES + +GL T+S L R+ + D+ FK K D + P+
Sbjct: 293 LFPELGLVEEDYLEMSWGESFAYLAGL---ETVSQLNNRFLKFDERAFKTKVDLTKEPLP 349
Query: 389 VTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
LE L KEP G++ + +GG M KI S+ FPHR+G ++YIVAW +
Sbjct: 350 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 409
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGE 508
K ++DW+ Y M PFVS PR Y+N++D+DLG ++ N + + +A+EI+R WGE
Sbjct: 410 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGE 468
Query: 509 KYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKGKS 549
YFL NY+RL++AKT+IDPNN+F++ Q IPP + + K+
Sbjct: 469 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFDYLEKT 509
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/521 (44%), Positives = 331/521 (63%), Gaps = 19/521 (3%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+ +SCL V N T+F S +++ ++ L+ SIQN F +S + KP AIILP
Sbjct: 26 DLLSCLTFNGVRNHTVF-------SADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 78
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
S ++L+N++ C R S +R+R GGHSYEG S ++SD F+++D+ NLN++S+DLESET
Sbjct: 79 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLS-YTSD-TPFILIDLMNLNRVSIDLESET 136
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV+ G+TLGE Y AI+E+S+ GF+AG CPTV ++SRKYGLAADNVVD
Sbjct: 137 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVD 196
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
A+L+DANG +L+R+AMGEDVFWAIR VWG +YAWKIKLL VP V+ F +++ +
Sbjct: 197 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 256
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
L++KWQ VA L +DF LS GA + K + L T GF+ G K A + +
Sbjct: 257 DEATSLLHKWQFVAEELEEDFTLSVLGGA---DEKQVWL--TMLGFHFGLKTVAKSTFDL 311
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNYFKAKSDYVRTPIS 388
FPEL + E+D EMSW ES + +GL T+S L R+ + D+ FK K D + P+
Sbjct: 312 LFPELGLVEEDYLEMSWGESFAYLAGL---ETVSQLNNRFLKFDERAFKTKVDLTKEPLP 368
Query: 389 VTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
LE L KEP G++ + +GG M KI S+ FPHR+G ++YIVAW +
Sbjct: 369 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 428
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGE 508
K ++DW+ Y M PFVS PR Y+N++D+DLG ++ N + + +A+EI+R WGE
Sbjct: 429 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGE 487
Query: 509 KYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKGKS 549
YFL NY+RL++AKT+IDPNN+F++ Q IPP + + K+
Sbjct: 488 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFDYLEKT 528
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/511 (45%), Positives = 327/511 (63%), Gaps = 19/511 (3%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+ +SCL V N T+F S +++ ++ L+ SIQN F +S + KP AIILP
Sbjct: 1 DLLSCLTFNGVRNHTVF-------SADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 53
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
S ++L+N++ C R S +R+R GGHSYEG S ++SD F+++D+ NLN++S+DLESET
Sbjct: 54 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLS-YTSD-TPFILIDLMNLNRVSIDLESET 111
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV+ G+TLGE Y AI+E+S+ GF+AG CPTV ++SRKYGLAADNVVD
Sbjct: 112 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVD 171
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
A+L+DANG +L+R+AMGEDVFWAIR VWG +YAWKIKLL VP V+ F +++ +
Sbjct: 172 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 231
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
L++KWQ VA L +DF LS GA + K + L T GF+ G K A + +
Sbjct: 232 DEATSLLHKWQFVAEELEEDFTLSVLGGA---DEKQVWL--TMLGFHFGLKTVAKSTFDL 286
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNYFKAKSDYVRTPIS 388
FPEL + E+D EMSW ES + +GL T+S L R+ + D+ FK K D + P+
Sbjct: 287 LFPELGLVEEDYLEMSWGESFAYLAGL---ETVSQLNNRFLKFDERAFKTKVDLTKEPLP 343
Query: 389 VTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
LE L KEP G++ + +GG M KI S+ FPHR+G ++YIVAW +
Sbjct: 344 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 403
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGE 508
K ++DW+ Y M PFVS PR Y+N++D+DLG ++ N + + +A+EI+R WGE
Sbjct: 404 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGE 462
Query: 509 KYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
YFL NY+RL++AKT+IDPNN+F++ Q IPP
Sbjct: 463 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/511 (45%), Positives = 326/511 (63%), Gaps = 19/511 (3%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+ +SCL V N T+F S +++ ++ L+ SIQN F +S + KP AIILP
Sbjct: 1 DLLSCLTFNGVRNHTVF-------SADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 53
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
S ++L+N++ C R S +R+R GGHSYEG S ++SD F+++D+ NLN++S+DLESET
Sbjct: 54 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLS-YTSD-TPFILIDLMNLNRVSIDLESET 111
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV+ G+TLGE Y AI+E+S+ GF+AG PTV ++SRKYGLAADNVVD
Sbjct: 112 AWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVD 171
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
A+L+DANG +L+R+AMGEDVFWAIR VWG +YAWKIKLL VP V+ F +++ +
Sbjct: 172 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 231
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
L++KWQ VA L +DF LS GA + K + L T GF+ G K A + +
Sbjct: 232 DEATSLLHKWQFVAEELEEDFTLSVLGGA---DEKQVWL--TMLGFHFGLKTVAKSTFDL 286
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNYFKAKSDYVRTPIS 388
FPEL + E+D EMSW ES + +GL T+S L R+ + D+ FK K D + P+
Sbjct: 287 LFPELGLVEEDYLEMSWGESFAYLAGL---ETVSQLNNRFLKFDERAFKTKVDLTKEPLP 343
Query: 389 VTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
LE L KEP G++ + +GG M KI S+ FPHR+G ++YIVAW +
Sbjct: 344 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 403
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGE 508
K ++DW+ Y M PFVS PR Y+N++D+DLG ++ N + + +A+EI+R WGE
Sbjct: 404 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGE 462
Query: 509 KYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
YFL NY+RL++AKT+IDPNN+F++ Q IPP
Sbjct: 463 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/511 (45%), Positives = 326/511 (63%), Gaps = 19/511 (3%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+ +SCL V N T+F S +++ ++ L+ SIQN F +S + KP AIILP
Sbjct: 4 DLLSCLTFNGVRNHTVF-------SADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 56
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
S ++L+N++ C R S +R+R GG SYEG S ++SD F+++D+ NLN++S+DLESET
Sbjct: 57 SKEELSNTIRCIRKGSWTIRLRSGGASYEGLS-YTSD-TPFILIDLMNLNRVSIDLESET 114
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV+ G+TLGE Y AI+E+S+ GF+AG CPTV ++SRKYGLAADNVVD
Sbjct: 115 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVD 174
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
A+L+DANG +L+R+AMGEDVFWAIR VWG +YAWKIKLL VP V+ F +++ +
Sbjct: 175 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 234
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
L++KWQ VA L +DF LS GA + K + L T GF+ G K A + +
Sbjct: 235 DEATSLLHKWQFVAEELEEDFTLSVLGGA---DEKQVWL--TMLGFHFGLKTVAKSTFDL 289
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNYFKAKSDYVRTPIS 388
FPEL + E+D EMSW ES + +GL T+S L R+ + D+ FK K D + P+
Sbjct: 290 LFPELGLVEEDYLEMSWGESFAYLAGL---ETVSQLNNRFLKFDERAFKTKVDLTKEPLP 346
Query: 389 VTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
LE L KEP G++ + +GG M KI S+ FPHR+G ++YIVAW +
Sbjct: 347 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 406
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGE 508
K ++DW+ Y M PFVS PR Y+N++D+DLG ++ N + + +A+EI+R WGE
Sbjct: 407 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGE 465
Query: 509 KYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
YFL NY+RL++AKT+IDPNN+F++ Q IPP
Sbjct: 466 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 496
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/511 (45%), Positives = 326/511 (63%), Gaps = 19/511 (3%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+ +SCL V N T+F S +++ ++ L+ SIQN F +S + KP AIILP
Sbjct: 1 DLLSCLTFNGVRNHTVF-------SADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 53
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
S ++L+N++ C R S +R+R GGHSYEG S ++SD F+++D+ NLN++S+DLESET
Sbjct: 54 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLS-YTSD-TPFILIDLMNLNRVSIDLESET 111
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV+ G+TLGE Y AI+E+S+ GF+AG PTV ++SRKYGLAADNVVD
Sbjct: 112 AWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVD 171
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
A+L+DANG +L+R+AMGEDVFWAIR VWG +YAWKIKLL VP V+ F +++ +
Sbjct: 172 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 231
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
L++KWQ VA L +DF LS GA + K + L T GF+ G K A + +
Sbjct: 232 DEATSLLHKWQFVAEELEEDFTLSVLGGA---DEKQVWL--TMLGFHFGLKTVAKSTFDL 286
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNYFKAKSDYVRTPIS 388
FPEL + E+D EMSW ES + +GL T+S L R+ + D+ FK K D + P+
Sbjct: 287 LFPELGLVEEDYLEMSWGESFAYLAGL---ETVSQLNNRFLKFDERAFKTKVDLTKEPLP 343
Query: 389 VTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
LE L KEP G++ + +GG M KI S+ FPHR+G ++YIVAW +
Sbjct: 344 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 403
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGE 508
K ++DW+ Y M PFVS PR Y+N++D+DLG ++ N + + +A+EI+R WGE
Sbjct: 404 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGE 462
Query: 509 KYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
YFL NY+RL++AKT+IDPNN+F++ Q IPP
Sbjct: 463 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/528 (39%), Positives = 302/528 (57%), Gaps = 29/528 (5%)
Query: 25 STPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVA 84
+ P NF+ C +++ NN + H + Y +LN +IQNLRF + PKP+
Sbjct: 1 ANPRENFLKCFSKHIPNNVANPKLVYTQHDQL----YMSILNSTIQNLRFISDTTPKPLV 56
Query: 85 IILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVD 144
I+ P + + ++LC + +++R R GGH EG S S FV++D+ N++ I +D
Sbjct: 57 IVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQ--VPFVVVDLRNMHSIKID 114
Query: 145 LESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAA 204
+ S+TAWV+ GATLGE Y I+E + F G CPTV L R YGLAA
Sbjct: 115 VHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAA 174
Query: 205 DNVVDALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLS 264
DN++DA L++ +G++L+R++MGED+FWAIR +GI+ AWKIKL+ VP + F +
Sbjct: 175 DNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVK 234
Query: 265 RPGSKQHVAKLVNKWQHVAPNLTDDFYL-SCFIGAGLPETK---SIGLSATFKGFYLGPK 320
+ + KL NKWQ++A D L + FI + + + F + G
Sbjct: 235 KNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGV 294
Query: 321 HEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKK-----RYNQDKNY 375
+ ++N FPEL + + D KE SWI++ +F+SG+ N +T ++ KK R K
Sbjct: 295 DSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNT-ANFKKEILLDRSAGKKTA 353
Query: 376 FKAKSDYVRTPISVTGIRTALEILDKEPKG---YVIFDPYGGIMHKIGSEEIAFPHRNGN 432
F K DYV+ PI T + LE L +E G YV++ PYGGIM +I I FPHR G
Sbjct: 354 FSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLY-PYGGIMEEISESAIPFPHRAGI 412
Query: 433 LFTIQYIVAW-YGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELIN 491
++ + Y +W EDN+K +I+W+R+ YN TP+VS PR AY+NY D+DLG+
Sbjct: 413 MYELWYTASWEKQEDNEK---HINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGK----- 464
Query: 492 SSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
++ S + AR+WGEKYF KN++RLVK KT +DPNN F N+Q IPP
Sbjct: 465 TNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 196/512 (38%), Positives = 283/512 (55%), Gaps = 30/512 (5%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+F++CL + ++ L+ +++ Y + + +++N++F KP+ II P
Sbjct: 12 DFLTCLTK-DIPPRQLY--------AKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPT 62
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
+ + +V+C R M +RVR GGH YEG S S F ++DM+ + +S+D ++ T
Sbjct: 63 NASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAAT 122
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV GA LG+ Y I++AS GF AG C T+ +L RKYG AADNV+D
Sbjct: 123 AWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVID 182
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
A ++DA GRLL+R+AMGED FWAIR +GIV +W++KLL VP V+ F + + G K
Sbjct: 183 AKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHK-GIK 241
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
+ LV KWQ VAP L DD + ++G A F+ YLG + + ++
Sbjct: 242 EGAIDLVTKWQTVAPALPDDLMIRIM---------AMGQGAMFEALYLGTCKDLVLLMTA 292
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISV 389
FPEL ++ KEM+WIES+ + G T+ DL R + K + K KSDYV PI
Sbjct: 293 RFPELGMNATHCKEMTWIESVPYIPMGPKG-TVRDLLNRTSNIKAFGKYKSDYVLEPIPK 351
Query: 390 TGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDK 449
+ L K G +I DPYGG + + FP R+G LF IQY+V W+GE
Sbjct: 352 SDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAA 411
Query: 450 SNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELIN--SSFPSKDAVEIARVWG 507
W R Y+ MTP+VS PR AY+NY D+DLG +++ S++ S +VWG
Sbjct: 412 LP--TQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYAS------GKVWG 463
Query: 508 EKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
EKYF N++RL + K IDP + F N+Q IPP
Sbjct: 464 EKYFKGNFERLARTKGKIDPEDYFRNEQSIPP 495
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 195/513 (38%), Positives = 277/513 (53%), Gaps = 30/513 (5%)
Query: 30 NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
+F+ CL + + P + S A Y +L +I+N R++ KP+ II P
Sbjct: 10 DFLGCLVK------EIPPRLLYAKSSPA---YPSVLGQTIRNSRWSSPDNVKPLYIITPT 60
Query: 90 SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
+ + ++V+C R S+ +RVR GGH YEG S S +F ++D++ + + VD ++ T
Sbjct: 61 QVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKART 120
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
AWV GA LGE Y AI +AS T F AG CPT+ +L RKYG+AA+NV+D
Sbjct: 121 AWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVID 180
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
L+DANG+L ++++MG+D FWA+R +GIV AW++KLL VP V+ F +S+ S+
Sbjct: 181 VKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSE 240
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
V ++NKWQ VAP L D + + G ATF+ YLG ++++
Sbjct: 241 GAV-DIINKWQVVAPQLPADLMIRII---------AQGPKATFEAMYLGTCKTLTPLMSS 290
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISV 389
FPEL ++ EMSWI+SI F + DL R N K + + KSDYV P
Sbjct: 291 KFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPK 350
Query: 390 TGIRTALEI-LDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
T L L K G +IFDPYG + FPHR G LF IQY+ W+
Sbjct: 351 TVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAP--G 408
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELIN--SSFPSKDAVEIARVW 506
+ + W + YN M P+VS PR AY NY DIDLG E++N S++ S +VW
Sbjct: 409 AAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYAS------GKVW 462
Query: 507 GEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
G+KYF N++RL K +DP + F N+Q IPP
Sbjct: 463 GQKYFKGNFERLAITKGKVDPTDYFRNEQSIPP 495
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 124/512 (24%), Positives = 197/512 (38%), Gaps = 75/512 (14%)
Query: 70 QNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGAS 129
+NLRF V P I L S ++ + + VR GGH YE F ++
Sbjct: 51 ENLRF----VGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYE---DFVANSDV 103
Query: 130 FVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXX 189
V++DMS L+ + D E V+ GATLG Y + G+CP V
Sbjct: 104 RVVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVT-LPGGACPDVGAGGHIL 162
Query: 190 XXXXXLLSRKYGLAAD--NVVDALLMDANGRLLNREAMGE------DVFWAIRXXXXXVW 241
LSR +G D + V+ +++DA+G A E D++WA +
Sbjct: 163 GGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNF 222
Query: 242 GIVYAWKIKLLQ--VPRVVSGFVLSRPGSK---------------QHVAKLVN---KW-- 279
G+V + ++ + VP G +L RP ++ A+LV +W
Sbjct: 223 GVVVRYWLRTAEADVP-PEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNHGRWFE 281
Query: 280 QHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEAL--TILNNFFPELRVS 337
Q+ P D + + L ++S L+ T + GP E T L + V
Sbjct: 282 QNSGP---DSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQ 338
Query: 338 -EKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTAL 396
D + + W+ S + +G K + + F + + + T L
Sbjct: 339 PHSDTRRLPWLHSTRWPGIAGDGDMTGRAKIKAAYARRSFDDRQ--------IGTLYTRL 390
Query: 397 EILDKE-PKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYID 455
D + P G V YGG ++ + ++ A R+ ++ I Y+ W ED + ++
Sbjct: 391 TSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRD-SILKIVYVTTW--EDPAQDPVHVR 447
Query: 456 WIRAFYNAM------TPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEK 509
WIR Y + P AY+NY D+DL + E S P W E
Sbjct: 448 WIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLADEEWNTSGVP----------WSEL 497
Query: 510 YFLKNYDRLVKAKTIIDPNNIFSNQQG--IPP 539
Y+ Y RL K DP N+F + +PP
Sbjct: 498 YYKDAYPRLQAVKARWDPRNVFRHALSVRVPP 529
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 113/495 (22%), Positives = 190/495 (38%), Gaps = 66/495 (13%)
Query: 81 KPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNK 140
+P + + + DQ+ ++V + VR GGH +EG F D A ++DMS + +
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEG---FVDDPAVRAVIDMSQMRQ 111
Query: 141 ISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKY 200
+ D V+ GATLGETY A+ AG CP V LSR+
Sbjct: 112 VFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLGGGYGPLSRRD 170
Query: 201 GLAADNV--VDALLMDANGRLLNREAMG------EDVFWAIRXXXXXVWGIVYAWKIKLL 252
G+ AD++ V+ +++DA+GR A +++WA +GIV + +
Sbjct: 171 GVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTP 230
Query: 253 QVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATF 312
+L P + + + W A LT++ + G + +
Sbjct: 231 GATGTDPSQLL--PKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQSNSAAGTPY 286
Query: 313 KG----FYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESIL--FFSGLSNGSTISDLK 366
FYL + +L+ + DG + E++L F + ++ G+ +
Sbjct: 287 ASMHSVFYLNSRAAGQILLD--------IQIDGG-LDGAEALLNDFVAAVNEGTGVEPAV 337
Query: 367 KRYNQ-----------DKNYF---KAKSDYVRTPISVTGIRTALEIL--DKEPKGYVIFD 410
+R + D F K+K Y+R P + T L D + G V
Sbjct: 338 QRSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLY 397
Query: 411 PYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAM------ 464
YGG ++ + A R+ ++ + W +D +N + WIR Y +
Sbjct: 398 SYGGKVNSVPETATATAQRD-SIIKVWMSATWMDPAHDDAN--LAWIREIYREIFATTGG 454
Query: 465 TPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTI 524
P +INY D+DL + S P W Y+ NY RL K K
Sbjct: 455 VPVPDDRTEGTFINYPDVDLVDERWNTSGVP----------WYTLYYKGNYPRLQKVKAR 504
Query: 525 IDPNNIFSNQQGIPP 539
DP ++F + + P
Sbjct: 505 WDPRDVFRHALSVRP 519
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 117/480 (24%), Positives = 206/480 (42%), Gaps = 67/480 (13%)
Query: 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI 141
P AI ++ + ++V C + ++++ + GGHSY +G V LD ++ I
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRM-IDVI 95
Query: 142 SVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYG 201
S + ++ A V+ GA LG + +++ S G+CP V S +G
Sbjct: 96 SYNDKTGIAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHMHG 154
Query: 202 LAADNVVDALLMDANGRLLNREAM-GEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSG 260
LA D+VV ++ A+GR++ A D+FW I+ +GIV WK+ P+V++
Sbjct: 155 LAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSN-FGIVAVWKLATFPAPKVLTR 213
Query: 261 FVLS-----RPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGF 315
F ++ + + + + + + + VAP +F + + GAG P +G
Sbjct: 214 FGVTLNWKNKTSALKGIEAVEDYARWVAPREV-NFRIGDY-GAGNP---------GIEGL 262
Query: 316 YLGPKHE---ALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTIS--DLKKRYN 370
Y G + A L + P V ++WIES+L +S + I+ ++ Y
Sbjct: 263 YYGTPEQWRAAFQPLLDTLPAGYVVNPT-TSLNWIESVLSYSNFDHVDFITPQPVENFYA 321
Query: 371 QDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIF--DPYGGI---MHKIGSEEIA 425
+ K D V+ + ++ +K + + D +GG + K+ + E A
Sbjct: 322 KSLTLKSIKGDAVKNFVDYY-----FDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETA 376
Query: 426 FPHRNGNLFTIQYIVAWYGEDNDK-----SNGYID-WIRAFYNAMTPFVSWGPRAAYINY 479
+PHR+ L+ IQ+ + DN++ S ++D W+ + A+ P WG YINY
Sbjct: 377 YPHRD-KLWLIQFYDRY---DNNQTYPETSFKFLDGWVNSVTKAL-PKSDWG---MYINY 428
Query: 480 MDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
D P D +V Y+ +N RL K K DP + F Q + P
Sbjct: 429 AD-------------PRMDRDYATKV----YYGENLARLQKLKAKFDPTDRFYYPQAVRP 471
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 120/508 (23%), Positives = 183/508 (36%), Gaps = 77/508 (15%)
Query: 71 NLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASF 130
N RF V +P LP + D + S+ E + R GGH + F
Sbjct: 28 NHRF----VVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQ---DFVGTPRRD 80
Query: 131 VILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXX 190
++LD+ NL+ I + V GAT+ + A+ N G+C V
Sbjct: 81 LVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGMGGLVAG 139
Query: 191 XXXXLLSRKYGLAADNV--VDALLMDANG--RLLNREA-----MGEDVFWAIRXXXXXVW 241
LSR+ GL D++ V+ ++D + RL+ A +GE +FWA +
Sbjct: 140 GGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGNF 198
Query: 242 GIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCF------ 295
G+V A++ + + L R + HV K+V W + F
Sbjct: 199 GVVTAYEFRSPE-HLATEPVGLPRAAGRLHVQKVVFPWAMIDETSFVTVMRRFFEWHERH 257
Query: 296 IGAGLPETKSIGLSATF---------------KGFYLGPKHEALTILNNFFPELR----- 335
G PE+ L ATF + + P+ E IL F L
Sbjct: 258 SEPGSPESS---LFATFFVNHVSSGVLQLMVQQDADVDPEGE---ILARFVASLTEGTGV 311
Query: 336 VSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTA 395
V G MSW+ + S G + R Y +A T ++ +
Sbjct: 312 VGIPRGGVMSWLTGTRYMSQADCGDVMG---ARSASKSAYHRAAP----TDEQLSVLHRH 364
Query: 396 LEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYID 455
L YV+F+ YGG +++ G + A P R+ ++ + AW +D + ++
Sbjct: 365 LHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRD-SVVKSSWFSAW--QDAELDELHLG 421
Query: 456 WIRAFYNAM------TPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEK 509
W+R Y P YINY D DL + S P W
Sbjct: 422 WLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSGEP----------WHHL 471
Query: 510 YFLKNYDRLVKAKTIIDPNNIFSNQQGI 537
Y+ NY RL AK DP N F + I
Sbjct: 472 YYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 81 KPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNK 140
+P I S +A SV + +E+ VR GGH+ G ++ +DG ++LD+ +N
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYAT--NDGG--IVLDLRLMNS 93
Query: 141 ISVDLESETAWVQGGATLGETYSAISEASNTHGFSA--GSCPTVXXXXXXXXXXXXLLSR 198
I +D A + GG G+ + EA+ G +A G P V L+
Sbjct: 94 IHIDTAGSRARIGGGVISGDL---VKEAAK-FGLAAVTGMHPKVGFCGLALNGGVGFLTP 149
Query: 199 KYGLAADNVVDALLMDANGRLL-NREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPR- 256
KYGLA+DN++ A L+ A G ++ + ++FWA+R +G+V +++L ++PR
Sbjct: 150 KYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPN-FGVVTEVEVQLYELPRK 208
Query: 257 VVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIG 297
+++GF+ P S +A L+ + D Y S F+G
Sbjct: 209 MLAGFITWAP-SVSELAGLLTSLLDALNEMADHIYPSVFVG 248
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 110/508 (21%), Positives = 196/508 (38%), Gaps = 60/508 (11%)
Query: 65 LNFSIQ--NLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSS 122
LN ++ N RF +P I L S Q+A++V + VR GGH +E
Sbjct: 43 LNLKLRGANSRFNG----EPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFE---D 95
Query: 123 FSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTV 182
F + VI+DMS L +I+ D ++ G TL E Y + N G C V
Sbjct: 96 FVDNPDVKVIIDMSLLTEIAYDPSMNAFLIEPGNTLSEVYEKLYLGWNV-TIPGGVCGGV 154
Query: 183 XXXXXXXXXXXXLLSRKYGLAADNV--VDALLMDANGR------LLNREAMGEDVFWAIR 234
LSR++G D + V+ ++++ G+ R+ D++WA
Sbjct: 155 GVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHT 214
Query: 235 XXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSC 294
+G+V + +++ + +L +P + + + W +T+ +
Sbjct: 215 GGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFDWA----GMTEAAFSRL 270
Query: 295 FIGAGLPETKSIGLSATFKGFY----LGPKHEALTILNNFFP-ELRVSEKDGKEM--SWI 347
G ++ G + + G + +G + + P ++ + D + + + I
Sbjct: 271 LRNHGEWYERNSGPDSPYTGLWSQLMIGNEVPGMGESGFMMPIQVDATRPDARRLLDAHI 330
Query: 348 ESILFFSGLSNGSTISDLKKRY-------NQDKNYFKAKSDYVRTPISVTGIRTALE--- 397
E+++ G+ +++R+ K K+ Y+R ++ I+ E
Sbjct: 331 EAVI--DGVPPAEVPEPIEQRWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMT 388
Query: 398 ILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWI 457
+D G V YGG ++ + A P R+ + + YI W N+ ++ W+
Sbjct: 389 HMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNEAK--HLTWV 445
Query: 458 RAFY------NAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYF 511
R Y P + AYINY D DL + L S P W + Y+
Sbjct: 446 RKLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGLNTSGVP----------WHDLYY 495
Query: 512 LKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
N+ RL K K DP N F + I P
Sbjct: 496 KGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 116/493 (23%), Positives = 209/493 (42%), Gaps = 68/493 (13%)
Query: 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI 141
P AI +P S + +A +V C + +++ + GGHSY DG ++L++ + ++
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDG--HLMLELDRMYRV 100
Query: 142 SVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYG 201
SVD ++ A +QGGA LG T + + N S G+CP V + +G
Sbjct: 101 SVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGFATHTHG 158
Query: 202 LAADNVVDALLMDANGRLLN-REAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSG 260
L D ++ A ++ A+ +++ E D+FWA+R + IV ++ + P +++
Sbjct: 159 LTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITT 217
Query: 261 F-VLSRPGSKQHVA--KLVNKW-QHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFY 316
+ V + KQHVA K + W Q+ P + + I A + ++G +
Sbjct: 218 YQVTTTWNRKQHVAGLKALQDWAQNTMPR---ELSMRLEINAN---------ALNWEGNF 265
Query: 317 LGPKHEALTILNNFFPELRVSEKDGK--EMSWIESI-LFFSGLSNGSTISDLKKRYNQD- 372
G + IL + K E W I + G +DL YN D
Sbjct: 266 FGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYG-------ADLNITYNYDV 318
Query: 373 KNYFKAKSDYVRTP-ISVTGIRTALEI-LD----KEPKGYVI-FDPYGG---IMHKIGSE 422
YF A S + P +S I+ ++ D + +G+ I +D +GG + + ++
Sbjct: 319 HEYFYANS--LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSND 376
Query: 423 EIAFPHRNGNLFTIQYIVAWYGEDNDKS----NGYIDWIRAFYNAMTPFVSWGPRAAYIN 478
E A+ HR+ L+ Q+ + Y +N+ S +G+ ++++ F + + + Y N
Sbjct: 377 ETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGF-EFMQGFVATIEDTLPEDRKGKYFN 434
Query: 479 YMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIP 538
Y D L + E + Y+ N ++L K DP ++F N +
Sbjct: 435 YADTTLTKEEA-----------------QKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVE 477
Query: 539 PTFSLGFKGKSSE 551
P L K S E
Sbjct: 478 PIAYLEQKLISEE 490
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/493 (23%), Positives = 208/493 (42%), Gaps = 68/493 (13%)
Query: 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI 141
P AI +P S + +A +V C + +++ + GGHSY DG ++L++ + ++
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDG--HLMLELDRMYRV 100
Query: 142 SVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYG 201
SVD ++ A +QGGA LG T + + N S G+ P V + +G
Sbjct: 101 SVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGFATHTHG 158
Query: 202 LAADNVVDALLMDANGRLLN-REAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSG 260
L D ++ A ++ A+ +++ E D+FWA+R + IV ++ + P +++
Sbjct: 159 LTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITT 217
Query: 261 F-VLSRPGSKQHVA--KLVNKW-QHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFY 316
+ V + KQHVA K + W Q+ P + + I A + ++G +
Sbjct: 218 YQVTTTWNRKQHVAGLKALQDWAQNTMPR---ELSMRLEINAN---------ALNWEGNF 265
Query: 317 LGPKHEALTILNNFFPELRVSEKDGK--EMSWIESI-LFFSGLSNGSTISDLKKRYNQD- 372
G + IL + K E W I + G +DL YN D
Sbjct: 266 FGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYG-------ADLNITYNYDV 318
Query: 373 KNYFKAKSDYVRTP-ISVTGIRTALEI-LD----KEPKGYVI-FDPYGG---IMHKIGSE 422
YF A S + P +S I+ ++ D + +G+ I +D +GG + + ++
Sbjct: 319 HEYFYANS--LTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSND 376
Query: 423 EIAFPHRNGNLFTIQYIVAWYGEDNDKS----NGYIDWIRAFYNAMTPFVSWGPRAAYIN 478
E A+ HR+ L+ Q+ + Y +N+ S +G+ ++++ F + + + Y N
Sbjct: 377 ETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGF-EFMQGFVATIEDTLPEDRKGKYFN 434
Query: 479 YMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIP 538
Y D L + E + Y+ N ++L K DP ++F N +
Sbjct: 435 YADTTLTKEEA-----------------QKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVE 477
Query: 539 PTFSLGFKGKSSE 551
P L K S E
Sbjct: 478 PIAYLEQKLISEE 490
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 85 IILPESIDQLANSVLCCR--NESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI- 141
++ P S +++ V C+ NE+ V GG++ G + V++ + +KI
Sbjct: 55 VLRPGSTEEV---VAICKLANEARVALVPQGGNT--GLVGGQTPHNGEVVISLKRXDKIR 109
Query: 142 SVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYG 201
+D S T V+ GA L +E S G+ + + YG
Sbjct: 110 EIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYG 169
Query: 202 LAADNVVDALLMDANGRLLN------REAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVP 255
LA D + ++ A+GR+ N ++ G D + GI+ A +KL P
Sbjct: 170 LARDXALGVEVVLADGRVXNLLSKLKKDNTGYD-LRDLFIGAEGTLGIITAATLKLFPKP 228
Query: 256 RVV-SGFV 262
R V + FV
Sbjct: 229 RAVETAFV 236
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 440 VAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSK 497
+ W G++N NG DW+ ++A + + W P ++ Y + E+ LI SF S
Sbjct: 147 ITWTGKENVIYNGVTDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205
Query: 498 DAVEIARV 505
++++ +
Sbjct: 206 ESLQYPKT 213
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 488 ELINSSFPSKDAVEIARVWGEKYFLK--NYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGF 545
E N F D E+AR WGE+ NYD+L +A NI + G + F
Sbjct: 28 EGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDF 87
Query: 546 KG 547
G
Sbjct: 88 HG 89
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 150 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 208
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 209 SDESLQYPKT 218
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 203
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 204 SDESLQYPKT 213
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 203
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 204 SDESLQYPKT 213
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 147 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 205
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 206 SDESLQYPKT 215
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 203
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 204 SDESLQYPKT 213
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 157 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 215
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 216 SDESLQYPKT 225
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 203
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 204 SDESLQYPKT 213
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 148 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 206
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 207 SDESLQYPKT 216
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 153 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 211
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 212 SDESLQYPKT 221
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 156 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 214
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 215 SDESLQYPKT 224
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 148 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 206
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 207 SDESLQYPKT 216
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 203
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 204 SDESLQYPKT 213
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 153 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 211
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 212 SDESLQYPKT 221
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 153 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 211
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 212 SDESLQYPKT 221
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 146 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 204
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 205 SDESLQYPKT 214
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 155 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 213
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 214 SDESLQYPKT 223
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 183 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 241
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 242 SDESLQYPKT 251
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 203
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 204 SDESLQYPKT 213
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 203
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 204 SDESLQYPKT 213
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 438 YIVAWYGEDNDKSNGYIDWI--RAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFP 495
Y + W G+++ NG DW+ ++A + + W P ++ Y + E+ LI SF
Sbjct: 151 YRITWTGKEDIIYNGITDWVYEEEVFSAYSA-LWWSPNGTFLAYAQFNDTEVPLIEYSFY 209
Query: 496 SKDAVEIARV 505
S ++++ +
Sbjct: 210 SDESLQYPKT 219
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 491 NSSFPSKDAVEIARVWGEKYFLKN--YDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKG 547
+ F D E+AR WGE+ N YD+L +A NI S G + F+G
Sbjct: 33 HGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRFDFQG 91
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 307 GLSATFKGFYLGPKHEALTILNNFFPE 333
GL A KG L P H A+ +LN FF E
Sbjct: 222 GLIAGEKGNLLDPTHAAMRVLNTFFTE 248
>pdb|2UXY|A Chain A, Aliphatic Amidase
Length = 341
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 444 GEDNDKSNGYIDW--IRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVE 501
GE K I W I +Y +VS GP+ I+ + D G I K A
Sbjct: 126 GEIVQKYRKIIPWCPIEGWYPGGQTYVSEGPKGMKISLIIXDDGNYPEIWRDCAMKGAEL 185
Query: 502 IARVWGEKYFLKNYDRLVKAKTIIDPNNIF---SNQQGIPPTFS-------LGFKGKS 549
I R G Y K+ +++ AK + NN + +N G +S +GF G++
Sbjct: 186 IVRCQGYMYPAKD-QQVMMAKAMAWANNCYVAVANAAGFDGVYSYFGHSAIIGFDGRT 242
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 39/200 (19%)
Query: 246 AWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFY---LSCFIGAGLPE 302
++++L++ P+ F +S G+ + + V + H NL + + + +I +G P
Sbjct: 28 GYEVQLVKSPK---DFNIS--GTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPI 82
Query: 303 TK-SIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSW---IESILFFSGLSN 358
+GL A F G PK L ++ SEK E+ W I S F GL
Sbjct: 83 MGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGL-- 140
Query: 359 GSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHK 418
D KRY YF + + IL+ E K + D + K
Sbjct: 141 -----DPYKRY-----YF---------------VHSFAAILNSEKKKNLENDGWKIAKAK 175
Query: 419 IGSEEIAFPHRNGNLFTIQY 438
GSEE N+F Q+
Sbjct: 176 YGSEEFIAAVNKNNIFATQF 195
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 39/200 (19%)
Query: 246 AWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFY---LSCFIGAGLPE 302
++++L++ P+ F +S G+ + + V + H NL + + + +I +G P
Sbjct: 28 GYEVQLVKSPK---DFNIS--GTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPI 82
Query: 303 TK-SIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSW---IESILFFSGLSN 358
+GL A F G PK L ++ SEK E+ W I S F GL
Sbjct: 83 MGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGL-- 140
Query: 359 GSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHK 418
D KRY YF + + IL+ E K + D + K
Sbjct: 141 -----DPYKRY-----YF---------------VHSFAAILNSEKKKNLENDGWKIAKAK 175
Query: 419 IGSEEIAFPHRNGNLFTIQY 438
GSEE N+F Q+
Sbjct: 176 YGSEEFIAAVNKNNIFATQF 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,292,654
Number of Sequences: 62578
Number of extensions: 686734
Number of successful extensions: 1770
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1687
Number of HSP's gapped (non-prelim): 54
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)