Query 008842
Match_columns 551
No_of_seqs 344 out of 2514
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 17:16:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01677 pln_FAD_oxido plant- 100.0 5.3E-40 1.1E-44 355.3 31.2 206 27-261 1-218 (557)
2 PLN02441 cytokinin dehydrogena 100.0 1.2E-38 2.7E-43 340.5 40.6 201 72-279 55-265 (525)
3 TIGR01678 FAD_lactone_ox sugar 100.0 5.2E-37 1.1E-41 325.8 34.0 179 74-260 7-187 (438)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 8.3E-35 1.8E-39 308.6 32.9 176 74-260 4-181 (419)
5 TIGR01676 GLDHase galactonolac 100.0 2E-34 4.3E-39 307.7 34.3 179 73-259 53-233 (541)
6 PLN02805 D-lactate dehydrogena 100.0 2.1E-33 4.6E-38 304.7 35.6 194 80-280 132-332 (555)
7 KOG4730 D-arabinono-1, 4-lacto 100.0 1.2E-34 2.5E-39 291.9 22.2 456 18-536 10-508 (518)
8 COG0277 GlcD FAD/FMN-containin 100.0 1.9E-32 4.1E-37 296.0 29.2 182 80-266 30-218 (459)
9 PLN02465 L-galactono-1,4-lacto 100.0 5.9E-31 1.3E-35 283.3 34.5 196 73-279 88-285 (573)
10 PRK11230 glycolate oxidase sub 100.0 7.1E-32 1.5E-36 291.3 23.6 197 79-280 53-255 (499)
11 TIGR00387 glcD glycolate oxida 100.0 2.5E-30 5.5E-35 274.6 19.5 192 85-281 1-199 (413)
12 KOG1231 Proteins containing th 100.0 3E-29 6.5E-34 253.0 25.7 174 77-257 59-241 (505)
13 PRK11282 glcE glycolate oxidas 100.0 1.5E-29 3.2E-34 259.9 20.3 182 90-280 3-193 (352)
14 PF01565 FAD_binding_4: FAD bi 99.9 2.2E-27 4.7E-32 214.6 14.5 138 82-223 1-139 (139)
15 PRK11183 D-lactate dehydrogena 99.9 1.4E-23 3.1E-28 221.1 19.5 203 80-287 37-297 (564)
16 PRK13905 murB UDP-N-acetylenol 99.9 3.3E-24 7.1E-29 217.7 13.9 162 80-255 29-193 (298)
17 PRK14652 UDP-N-acetylenolpyruv 99.9 2.9E-21 6.3E-26 195.4 14.4 160 80-254 34-195 (302)
18 KOG1232 Proteins containing th 99.9 2.4E-21 5.2E-26 191.3 11.9 190 68-261 76-272 (511)
19 PRK12436 UDP-N-acetylenolpyruv 99.9 7.4E-21 1.6E-25 192.9 14.9 160 80-254 35-197 (305)
20 PRK13903 murB UDP-N-acetylenol 99.8 1.2E-20 2.5E-25 194.3 15.9 163 80-255 31-197 (363)
21 TIGR00179 murB UDP-N-acetyleno 99.8 1.2E-20 2.6E-25 189.8 14.2 161 80-253 11-174 (284)
22 PRK13906 murB UDP-N-acetylenol 99.8 1.2E-20 2.5E-25 191.5 14.1 160 80-253 35-196 (307)
23 PRK14649 UDP-N-acetylenolpyruv 99.8 1.1E-18 2.5E-23 176.2 17.3 164 80-254 19-192 (295)
24 KOG1233 Alkyl-dihydroxyacetone 99.8 1.1E-18 2.4E-23 172.7 14.8 208 68-278 148-362 (613)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 1.6E-16 3.6E-21 159.9 14.1 159 80-254 32-193 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.6 2.4E-15 5.1E-20 148.6 14.6 163 80-254 19-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.6 3.5E-15 7.6E-20 149.8 13.9 162 80-255 31-195 (302)
28 PF08031 BBE: Berberine and be 99.6 2.7E-16 5.8E-21 113.5 3.6 47 475-538 1-47 (47)
29 PRK00046 murB UDP-N-acetylenol 99.6 4.2E-15 9E-20 151.5 12.8 161 80-254 19-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 1.8E-14 4E-19 146.5 14.1 163 80-254 28-236 (354)
31 PRK14651 UDP-N-acetylenolpyruv 99.5 7.1E-13 1.5E-17 131.4 15.7 151 80-254 18-170 (273)
32 KOG1262 FAD-binding protein DI 99.5 9.2E-14 2E-18 138.4 7.8 127 131-259 104-233 (543)
33 PRK13904 murB UDP-N-acetylenol 99.1 1.9E-09 4.1E-14 106.0 14.1 142 81-255 18-160 (257)
34 PLN00107 FAD-dependent oxidore 98.3 1.4E-06 3.1E-11 84.6 6.9 119 391-535 77-198 (257)
35 PF04030 ALO: D-arabinono-1,4- 96.1 0.0053 1.1E-07 61.3 4.2 58 453-534 197-254 (259)
36 PF00941 FAD_binding_5: FAD bi 94.7 0.045 9.7E-07 51.1 4.7 78 82-164 2-80 (171)
37 PF09265 Cytokin-bind: Cytokin 94.4 0.17 3.7E-06 50.7 8.3 33 504-537 248-280 (281)
38 PRK09971 xanthine dehydrogenas 94.2 0.23 4.9E-06 50.6 9.1 74 84-163 6-82 (291)
39 PRK09799 putative oxidoreducta 94.2 0.16 3.4E-06 50.7 7.7 141 84-250 4-155 (258)
40 TIGR02963 xanthine_xdhA xanthi 94.1 0.48 1E-05 51.5 11.7 152 82-251 192-358 (467)
41 TIGR03312 Se_sel_red_FAD proba 92.9 0.35 7.7E-06 48.2 7.7 138 85-250 4-154 (257)
42 TIGR03195 4hydrxCoA_B 4-hydrox 88.8 0.79 1.7E-05 47.2 5.8 75 83-163 5-81 (321)
43 TIGR03199 pucC xanthine dehydr 86.0 1.1 2.3E-05 45.0 4.8 71 88-163 1-73 (264)
44 PF02913 FAD-oxidase_C: FAD li 82.4 2.1 4.5E-05 41.6 5.1 27 506-532 217-244 (248)
45 PLN00192 aldehyde oxidase 78.3 5.5 0.00012 49.1 7.7 83 82-167 233-316 (1344)
46 PLN02906 xanthine dehydrogenas 77.6 4.7 0.0001 49.6 6.9 79 83-167 229-309 (1319)
47 TIGR02969 mam_aldehyde_ox alde 72.8 8.7 0.00019 47.3 7.4 78 83-166 237-316 (1330)
48 COG4630 XdhA Xanthine dehydrog 68.6 11 0.00023 39.2 5.8 143 82-236 203-354 (493)
49 COG1319 CoxM Aerobic-type carb 64.1 20 0.00044 36.2 6.8 77 82-163 3-81 (284)
50 TIGR00387 glcD glycolate oxida 60.4 6.9 0.00015 41.8 3.0 28 505-532 382-410 (413)
51 PRK11230 glycolate oxidase sub 48.7 13 0.00029 40.8 2.8 33 506-538 440-473 (499)
52 COG1519 KdtA 3-deoxy-D-manno-o 41.9 1.3E+02 0.0028 32.1 8.6 35 80-114 259-293 (419)
53 PRK11282 glcE glycolate oxidas 41.4 17 0.00036 38.1 2.0 21 513-533 324-345 (352)
54 PF02601 Exonuc_VII_L: Exonucl 39.9 30 0.00064 35.5 3.6 56 53-115 20-87 (319)
55 COG4981 Enoyl reductase domain 31.5 62 0.0013 35.4 4.4 31 80-110 150-181 (717)
56 PRK00286 xseA exodeoxyribonucl 31.0 41 0.0009 36.2 3.1 63 46-115 134-204 (438)
57 KOG2499 Beta-N-acetylhexosamin 26.3 79 0.0017 34.2 4.0 27 90-116 248-276 (542)
58 KOG3282 Uncharacterized conser 23.5 1.1E+02 0.0024 28.7 3.9 36 73-110 118-153 (190)
59 COG1570 XseA Exonuclease VII, 21.3 47 0.001 35.6 1.2 56 53-115 141-205 (440)
60 PF09286 Pro-kuma_activ: Pro-k 20.2 63 0.0014 28.7 1.8 47 56-115 39-85 (143)
No 1
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=5.3e-40 Score=355.29 Aligned_cols=206 Identities=21% Similarity=0.262 Sum_probs=174.0
Q ss_pred CcccHHhHHhhcCCCCcccCCCCCCCCCCCCCcCcHHHhhhcccccccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCC
Q 008842 27 PTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESM 106 (551)
Q Consensus 27 ~~~~~~~cl~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~ 106 (551)
|+++..+|.+.. ++|++ ++.|.+ |.....+.|.+|++|+|++||+++|++|+++++
T Consensus 1 ~~~~~~~~~~~~--~~~~~------------~~~w~n----------Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~ 56 (557)
T TIGR01677 1 PPDDPVRCVSGG--ANCTV------------SNAYGA----------FPDRSTCRAANVAYPKTEAELVSVVAAATAAGR 56 (557)
T ss_pred CCCCCeecccCC--CCcee------------ecchhh----------cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCC
Confidence 456678896443 36887 566654 666667899999999999999999999999999
Q ss_pred eEEEEc-CCCCCCCCccccC-CCCeEEEEEcCCCCc-eEEeCCCCEEEEecCCCHHHHHHHHHHcCCcccccCC-CCCcc
Q 008842 107 ELRVRC-GGHSYEGTSSFSS-DGASFVILDMSNLNK-ISVDLESETAWVQGGATLGETYSAISEASNTHGFSAG-SCPTV 182 (551)
Q Consensus 107 ~~~vrg-gGhs~~g~~~~~~-~g~~~vvIdl~~l~~-i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g-~~~~v 182 (551)
+|+|+| +||++.+.+.... +| +++|||++||+ +++|.++.+|+|+||+++.+|.+.|.++| +.++.+ .+..+
T Consensus 57 ~v~v~GG~gHs~~~~a~t~~~~g--gvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~G--lal~~~~~~~~~ 132 (557)
T TIGR01677 57 KMKVVTRYSHSIPKLACPDGSDG--ALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAG--LALPYAPYWWGL 132 (557)
T ss_pred eEEEEeCCCCCcCcccccCCCCC--EEEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcC--CEeccCCCCCCe
Confidence 999996 6999987665521 12 59999999999 59999999999999999999999999988 445443 44567
Q ss_pred ccccccccCCccccc-cccCccccceeeeEEEecCC------cEEEcc-CCCchhHHHhhcCCCCcceeeEEEEEeeeec
Q 008842 183 GVGGHIGGGGFGLLS-RKYGLAADNVVDALLMDANG------RLLNRE-AMGEDVFWAIRGGGGGVWGIVYAWKIKLLQV 254 (551)
Q Consensus 183 gvgG~~~~gg~G~~s-~~~G~~~D~v~~~~vV~~~G------~i~~~~-~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~ 254 (551)
+|||.+++|+||... ++||..+|+|++++||++|| ++++++ .+++|||||+||+ +|+|||||++|||++|.
T Consensus 133 TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~ 211 (557)
T TIGR01677 133 TVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVS-LGVLGVISQVTLALQPM 211 (557)
T ss_pred EeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccC-CCccEeeeEEEEEEEcc
Confidence 999999999999766 68999999999999999998 788887 5789999999999 79999999999999999
Q ss_pred CceEEEE
Q 008842 255 PRVVSGF 261 (551)
Q Consensus 255 p~~~~~~ 261 (551)
++....+
T Consensus 212 ~~~~~~~ 218 (557)
T TIGR01677 212 FKRSVTY 218 (557)
T ss_pred ccceEEE
Confidence 8754443
No 2
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.2e-38 Score=340.46 Aligned_cols=201 Identities=21% Similarity=0.307 Sum_probs=171.6
Q ss_pred cccCCCCCCCceEEEeeCCHHHHHHHHHHHH--hCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCc------e-E
Q 008842 72 LRFTDSSVPKPVAIILPESIDQLANSVLCCR--NESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNK------I-S 142 (551)
Q Consensus 72 ~r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~--~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~------i-~ 142 (551)
..|.......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+.. ++ |++|||++||+ + +
T Consensus 55 ~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~--~~--GivIdms~Ln~i~~~~~ii~ 130 (525)
T PLN02441 55 KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA--PG--GVVVDMRSLRGGVRGPPVIV 130 (525)
T ss_pred cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC--CC--eEEEECCCCCCcCccCceEE
Confidence 3465555679999999999999999999997 679999999999999998876 33 59999999999 3 7
Q ss_pred EeCCCCEEEEecCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEc
Q 008842 143 VDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNR 222 (551)
Q Consensus 143 ~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~ 222 (551)
+|.+..+|+|++|++|.+|++++.++|+. ....+.+..++|||.+++||+|..+.+||..+|+|+++|||+++|+++++
T Consensus 131 vd~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~ 209 (525)
T PLN02441 131 VSGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTC 209 (525)
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEe
Confidence 88889999999999999999999998842 22345556788999999999999999999999999999999999999999
Q ss_pred c-CCCchhHHHhhcCCCCcceeeEEEEEeeeecCceEEEEEEEcCCCHhHHHHHHHHH
Q 008842 223 E-AMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKW 279 (551)
Q Consensus 223 ~-~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 279 (551)
+ .+|+|||||++|| +|+|||||++++|++|.|+....+.+.+. +.+++.+.+..+
T Consensus 210 s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~-~~~~~~~d~~~l 265 (525)
T PLN02441 210 SPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYS-DFSTFTRDQERL 265 (525)
T ss_pred CCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcC-CHHHHHHHHHHH
Confidence 8 6789999999998 79999999999999999997666555554 455554444443
No 3
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=5.2e-37 Score=325.78 Aligned_cols=179 Identities=25% Similarity=0.360 Sum_probs=161.4
Q ss_pred cCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEE
Q 008842 74 FTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWV 152 (551)
Q Consensus 74 ~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v 152 (551)
|.......|.+|+.|+|++||+++|++|++++++++++|+|||+.+.+.. + +++|||++||+| ++|+++++|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~--~---gvvIdl~~l~~i~~id~~~~~vtV 81 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT--D---GFLIHLDKMNKVLQFDKEKKQITV 81 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC--C---eEEEEhhhcCCceEEcCCCCEEEE
Confidence 55555678999999999999999999999999999999999999876654 4 499999999998 99999999999
Q ss_pred ecCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc-CCCchhHH
Q 008842 153 QGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE-AMGEDVFW 231 (551)
Q Consensus 153 ~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~-~~~~dLf~ 231 (551)
+||+++.+|.+.|.++|+.+.. .|.++.++|||.+++|+||. +.+||..+|+|+++++|++||++++++ .+++||||
T Consensus 82 ~aG~~l~~L~~~L~~~Gl~l~~-~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~ 159 (438)
T TIGR01678 82 EAGIRLYQLHEQLDEHGYSMSN-LGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQ 159 (438)
T ss_pred cCCCCHHHHHHHHHHcCCEecC-CCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHH
Confidence 9999999999999999854332 57788899999999999997 789999999999999999999999998 56899999
Q ss_pred HhhcCCCCcceeeEEEEEeeeecCceEEE
Q 008842 232 AIRGGGGGVWGIVYAWKIKLLQVPRVVSG 260 (551)
Q Consensus 232 a~rG~g~g~fGiVt~~~~~l~p~p~~~~~ 260 (551)
|.+|+ +|+|||||++|||++|.+.....
T Consensus 160 a~~~~-~G~lGIIt~vtl~l~p~~~l~~~ 187 (438)
T TIGR01678 160 AARVS-LGCLGIIVTVTIQVVPQFHLQET 187 (438)
T ss_pred HHhcC-CCceEeeEEEEEEEEeccceEEE
Confidence 99998 79999999999999998766544
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=8.3e-35 Score=308.63 Aligned_cols=176 Identities=20% Similarity=0.361 Sum_probs=154.9
Q ss_pred cCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEE
Q 008842 74 FTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWV 152 (551)
Q Consensus 74 ~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v 152 (551)
|.....+.|.+|++|+|++||+++|++|++ +++++|+|||+.+.+.. +| ++|||++||+| ++|+++++|+|
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~--~g---~~idl~~l~~i~~~d~~~~~v~v 75 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT--DG---TMISLTGLQGVVDVDQPTGLATV 75 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC--CC---EEEEhhHcCCceeecCCCCEEEE
Confidence 555556789999999999999999999974 69999999999886654 44 99999999998 99999999999
Q ss_pred ecCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc-CCCchhHH
Q 008842 153 QGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE-AMGEDVFW 231 (551)
Q Consensus 153 ~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~-~~~~dLf~ 231 (551)
|||+++.+|.+.|.++|+.++..+ .+..++|||.+++|+||. +.+||..+|+|++++||++||++++++ .+++||||
T Consensus 76 ~aG~~l~~l~~~L~~~G~~l~~~~-~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~ 153 (419)
T TIGR01679 76 EAGTRLGALGPQLAQRGLGLENQG-DIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYL 153 (419)
T ss_pred cCCCCHHHHHHHHHHcCCccccCC-CCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHH
Confidence 999999999999999996544334 445578999999999997 468999999999999999999999998 57899999
Q ss_pred HhhcCCCCcceeeEEEEEeeeecCceEEE
Q 008842 232 AIRGGGGGVWGIVYAWKIKLLQVPRVVSG 260 (551)
Q Consensus 232 a~rG~g~g~fGiVt~~~~~l~p~p~~~~~ 260 (551)
|+||| +|+|||||++|||++|.++....
T Consensus 154 a~~g~-~G~lGVIt~vtl~~~p~~~~~~~ 181 (419)
T TIGR01679 154 AARVS-LGALGVISQVTLQTVALFRLRRR 181 (419)
T ss_pred HHHhC-CCceEEEEEEEEEeecceEeEEE
Confidence 99998 79999999999999999866544
No 5
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2e-34 Score=307.69 Aligned_cols=179 Identities=20% Similarity=0.254 Sum_probs=162.5
Q ss_pred ccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEE
Q 008842 73 RFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAW 151 (551)
Q Consensus 73 r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~ 151 (551)
+|.....+.|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+.. ++ .+|||++||+| ++|+++++|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g---~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RA---GMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CC---eEEEhhhCCCCEEEcCCCCEEE
Confidence 477777789999999999999999999999999999999999999988776 44 57999999997 9999999999
Q ss_pred EecCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc-CCCchhH
Q 008842 152 VQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE-AMGEDVF 230 (551)
Q Consensus 152 v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~-~~~~dLf 230 (551)
|+||+++.+|.+.|.++|+.+. ..|.++.++|||.+++|+||.. .+||..+|+|++++||+++|++++++ .+++|||
T Consensus 128 V~AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF 205 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELF 205 (541)
T ss_pred EcCCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHH
Confidence 9999999999999999985432 2477888999999999999985 57999999999999999999999998 5789999
Q ss_pred HHhhcCCCCcceeeEEEEEeeeecCceEE
Q 008842 231 WAIRGGGGGVWGIVYAWKIKLLQVPRVVS 259 (551)
Q Consensus 231 ~a~rG~g~g~fGiVt~~~~~l~p~p~~~~ 259 (551)
||+||| +|+|||||++|||+.|.+....
T Consensus 206 ~Aargs-lG~LGVItevTLr~~Pa~~l~~ 233 (541)
T TIGR01676 206 FLARCG-LGGLGVVAEVTLQCVERQELVE 233 (541)
T ss_pred HHHhcC-CCceEeEEEEEEEEEeccceeE
Confidence 999998 7999999999999999987643
No 6
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2.1e-33 Score=304.65 Aligned_cols=194 Identities=21% Similarity=0.310 Sum_probs=172.4
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATL 158 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~ 158 (551)
..|.+|++|+|++||+++|++|+++++|+++||||||+.|.+... ++ +++|||++||+| ++|+++.+++||||+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~-~g--givIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAP-HG--GVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCC-CC--EEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 469999999999999999999999999999999999999887763 33 599999999998 79999999999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc------CCCchhHHH
Q 008842 159 GETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE------AMGEDVFWA 232 (551)
Q Consensus 159 ~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~------~~~~dLf~a 232 (551)
.+|+++|.++| +.++...++.++|||.++++++|..+.+||.++|+|+++|||++||+++++. ..++||+|+
T Consensus 209 ~~L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l 286 (555)
T PLN02805 209 LELNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRL 286 (555)
T ss_pred HHHHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHH
Confidence 99999999988 5566666677899999999999999999999999999999999999999763 146899999
Q ss_pred hhcCCCCcceeeEEEEEeeeecCceEEEEEEEcCCCHhHHHHHHHHHH
Q 008842 233 IRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQ 280 (551)
Q Consensus 233 ~rG~g~g~fGiVt~~~~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (551)
++|+ +|+|||||+++||++|.|+......+.|+ +.+++.+++....
T Consensus 287 ~~Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~-~~~~a~~av~~i~ 332 (555)
T PLN02805 287 VIGS-EGTLGVITEVTLRLQKIPQHSVVAMCNFP-TIKDAADVAIATM 332 (555)
T ss_pred hccC-CCceEEEEEEEEEeecCCcceEEEEEEcC-CHHHHHHHHHHHH
Confidence 9998 79999999999999999988777777776 5666666665543
No 7
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=100.00 E-value=1.2e-34 Score=291.86 Aligned_cols=456 Identities=19% Similarity=0.229 Sum_probs=291.0
Q ss_pred HHHccCCCCCcccHHhHHhhcCCCCcccCCCCCCCCCCCCCcCcHHHhhhcccccccCCCCCCCceEEEeeCCHHHHHHH
Q 008842 18 IIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANS 97 (551)
Q Consensus 18 ~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~~dv~~~ 97 (551)
+......+.|++++.+|-.... .|+. ...|.. |+.+..++.+-|.+|+|++|+.++
T Consensus 10 ~~~~~~~S~Pp~~p~r~~~~~~--~~t~------------~~tY~a----------fPdr~~c~aanv~yP~teaeL~~l 65 (518)
T KOG4730|consen 10 CTTGTTSSIPPPPPFRCDSGNT--FCTV------------ANTYGA----------FPDRSTCKAANVNYPKTEAELVEL 65 (518)
T ss_pred eeeeeeecCCCCCCccccccce--eeee------------eecccc----------cCchhhhhhcccCCCCCHHHHHHH
Confidence 4445556678888899965322 3443 344553 444555788899999999999999
Q ss_pred HHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHHHHHHHHHcCCccccc-
Q 008842 98 VLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGETYSAISEASNTHGFS- 175 (551)
Q Consensus 98 v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~- 175 (551)
|+.|+++|.++++.|-|||..+..+. +| .+|+|.+||++ ++|++..++||++|+++.||.++++..| +.++
T Consensus 66 Va~A~~a~~kirvVg~gHSp~~l~ct--dg---~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~G--lsL~~ 138 (518)
T KOG4730|consen 66 VAAATEAGKKIRVVGSGHSPSKLVCT--DG---LLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLG--LSLPN 138 (518)
T ss_pred HHHHHHcCceEEEecccCCCCcceec--cc---cEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcC--ccccC
Confidence 99999999999999999999999887 65 89999999997 9999999999999999999999999887 4444
Q ss_pred CCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc-CCCchhHHHhhcCCCCcceeeEEEEEeeeec
Q 008842 176 AGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE-AMGEDVFWAIRGGGGGVWGIVYAWKIKLLQV 254 (551)
Q Consensus 176 ~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~-~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~ 254 (551)
.++...+.|||++..|.||...+.|+.....++...++.++|.++..+ +.+||+|.|.|-+ .|.+|||.++||++.|.
T Consensus 139 ~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvS-LG~LGVIs~VTl~~vp~ 217 (518)
T KOG4730|consen 139 APSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVS-LGVLGVISQVTLSVVPA 217 (518)
T ss_pred CCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhc-ccceeEEEEEEEEEEec
Confidence 466677889999999999998776776666666677777899988888 5679999999999 89999999999999999
Q ss_pred CceEEEEEEEcCCC-HhHHHHHHHHHHHHCC--CCCccceeEEEEecCCCCcCCcceEEEEEEEeeCChHHHH----HHh
Q 008842 255 PRVVSGFVLSRPGS-KQHVAKLVNKWQHVAP--NLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEAL----TIL 327 (551)
Q Consensus 255 p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~----~~l 327 (551)
.+.+.++.+....+ ..+..-.+-.-.+|.+ .+|....+.++.....+..+ ....+..++ +...+. +.+
T Consensus 218 Fk~s~t~~v~n~~dl~~d~~~~~~~~~EF~~~~w~Py~~kvV~~~~nrv~~nt---g~~~f~p~~--~~~s~~~~~~~s~ 292 (518)
T KOG4730|consen 218 FKRSLTYVVTNDSDLFKDWKVTLGESHEFVDVLWYPYTGKVVYRRDNRVPVNT---GLPDFKPFR--PQPSAVLAKLRSF 292 (518)
T ss_pred ceeeeEEEEechHHHHHHHHHHhcccccceEEEEeccCCeEEEEecCcccccc---CCccccCCC--CcHHHHHHHHHHH
Confidence 99988877753211 1111101111122322 25656655555543332211 112222322 332221 112
Q ss_pred hhhCCCCCCCcCCce----eecHHHHHHHhc---C-CCCCCchhhhccccCCCCccccccccc-------------cc--
Q 008842 328 NNFFPELRVSEKDGK----EMSWIESILFFS---G-LSNGSTISDLKKRYNQDKNYFKAKSDY-------------VR-- 384 (551)
Q Consensus 328 ~~~~~~l~~~~~~~~----~~~~~~~~~~~~---~-~~~g~~~~~~~~~~~~~~~~f~~~s~~-------------~~-- 384 (551)
++...........|. ..++++.+.+-- + ..+|.++...+.++.....++.++++- +.
T Consensus 293 ~e~~~~~r~~~~kc~~a~~~tp~l~~~sf~~~~~~~~~t~~pvig~q~~~~~s~sCl~s~~~g~~~~W~~ri~g~f~~qt 372 (518)
T KOG4730|consen 293 EESIELFRDANGKCVSADSVTPYLERFSFGLTNGGKLFTGYPVIGVQGKMMSSGSCLDSQSDGTACEWDPRIKGFFFHQT 372 (518)
T ss_pred HHHHHHhhhccCceecCcccchhHHHhhhheecCcEeeecCcccCccchhccchhhhhhccCccccCCCccccCchhhee
Confidence 221111111112222 234444433210 1 122333333222333222333332210 00
Q ss_pred -CCCCHHHHHHHHHHHhc----CCceEEEEeecCCccccCCCCCCCCCCC--CCCeEEEEEEEEec--CCCCcchhh-HH
Q 008842 385 -TPISVTGIRTALEILDK----EPKGYVIFDPYGGIMHKIGSEEIAFPHR--NGNLFTIQYIVAWY--GEDNDKSNG-YI 454 (551)
Q Consensus 385 -~~~~~~~i~~~~~~~~~----~p~~~~~~~~~gGai~~~~~~~tafphR--~~~~~~i~~~~~w~--~~~~~~~~~-~~ 454 (551)
..++......++..+.. .+...|..+.+-|...|....+-+|--+ +...|.+.|+..-+ .-.+...++ ++
T Consensus 373 ~~s~pl~~~~~ai~dik~l~~ie~~~~c~~~~~~pi~iR~~t~sPayl~~t~~~~~fd~~Y~~a~dyrp~~~~l~e~~~~ 452 (518)
T KOG4730|consen 373 TFSIPLTAVKDAINDIKDLVKIEPKSLCGLETYNPILIRYVTSSPAYLGKTSEDCDFDTTYYRAKDYRPLTPRLYEDFYF 452 (518)
T ss_pred eeccchhhhhhHhhhhhhhcccChhhhhhhhhccceeEEEecCCchhhccCcccceeeeeeeeccCCCcCCCCcchhHHH
Confidence 12455666666655433 2345666666666555654444455322 23457777765542 223333445 67
Q ss_pred HHHHHHHHhhccCcCCCCCceeccCCCCccCccccccCCCCCchhHHHHHHHhhhhhcccHHHHHHHHhhcCCCCcccCC
Q 008842 455 DWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQ 534 (551)
Q Consensus 455 ~~i~~~~~~~~~~~~~~~~g~Y~Ny~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y~G~n~~RL~~IK~kyDP~~vF~~~ 534 (551)
+.++++ ++-+|....|||+..|.+. +.-.++| .|+++..++|+++||+++|+++
T Consensus 453 e~lEq~--al~kyna~PHWaKn~~laf----------------------e~vi~ky--~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 453 EELEQI--ALFKYNAKPHWAKNRNLAF----------------------EGVIRKY--KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred HHHHHH--HHHHhcCCcchhhhhhhhH----------------------HHHHHhc--cChHHHHHHHHhcCccchhhhh
Confidence 777776 4447777788998777664 1123567 8999999999999999999776
Q ss_pred CC
Q 008842 535 QG 536 (551)
Q Consensus 535 qs 536 (551)
|.
T Consensus 507 w~ 508 (518)
T KOG4730|consen 507 WT 508 (518)
T ss_pred hH
Confidence 63
No 8
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.9e-32 Score=295.99 Aligned_cols=182 Identities=31% Similarity=0.439 Sum_probs=164.3
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATL 158 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~ 158 (551)
..|.+|+.|+|++||+++|++|+++++||++||||||+.|.+.+ ++ +|+|||++||+| ++|+++.+++|+||+++
T Consensus 30 ~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~--~~--gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 30 GLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVP--DG--GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred CCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccC--CC--cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 57999999999999999999999999999999999999998887 32 599999999999 89999999999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEccC------CCchhHHH
Q 008842 159 GETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREA------MGEDVFWA 232 (551)
Q Consensus 159 ~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~~------~~~dLf~a 232 (551)
.+|.++|.++|+.+++.+++..+++|||+++++++|..+.+||.++|+|+++++|++||+++++.. .+.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999997666666666679999999999999999999999999999999999999998753 24798888
Q ss_pred hhcCCCCcceeeEEEEEeeeecCceEEEEEEEcC
Q 008842 233 IRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRP 266 (551)
Q Consensus 233 ~rG~g~g~fGiVt~~~~~l~p~p~~~~~~~~~~~ 266 (551)
.-|+ .|+|||||++++|++|.|+........+.
T Consensus 186 ~iGs-~GtlGiit~~tl~l~p~~~~~~~~~~~~~ 218 (459)
T COG0277 186 FVGS-EGTLGIITEATLKLLPLPETKATAVAGFP 218 (459)
T ss_pred cccC-CccceEEEEEEEEeccCCchheEEEEeCC
Confidence 8887 89999999999999999887666555544
No 9
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=5.9e-31 Score=283.29 Aligned_cols=196 Identities=20% Similarity=0.263 Sum_probs=166.2
Q ss_pred ccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEE
Q 008842 73 RFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAW 151 (551)
Q Consensus 73 r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~ 151 (551)
+|.....+.|.+++.|+|++||+++|+.|++++++|+++|+|||+.+.+.. ++ .+|||++|++| ++|.++++|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~t--d~---glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFS--RE---GMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeC--CC---EEEECcCCCCcEEEeCCCCEEE
Confidence 577777899999999999999999999999999999999999999887765 54 57899999997 9999999999
Q ss_pred EecCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc-CCCchhH
Q 008842 152 VQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE-AMGEDVF 230 (551)
Q Consensus 152 v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~-~~~~dLf 230 (551)
|++|+++.+|.+.|.++|+.+.. .|.....+|||.+++|+||... .+|..+|+|++++||+++|++++++ .+++|||
T Consensus 163 V~AG~~l~~L~~~L~~~GLal~n-~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF 240 (573)
T PLN02465 163 VQAGARVQQVVEALRPHGLTLQN-YASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELF 240 (573)
T ss_pred EccCCCHHHHHHHHHHcCCEecc-CCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHH
Confidence 99999999999999999854332 2445567899999999999854 6899999999999999999999998 5679999
Q ss_pred HHhhcCCCCcceeeEEEEEeeeecCceEEEEEEEcCCCHhHHHHHHHHH
Q 008842 231 WAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKW 279 (551)
Q Consensus 231 ~a~rG~g~g~fGiVt~~~~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 279 (551)
|+.|++ .|.|||||+++||+.|.++....... . +.+++.+.+..+
T Consensus 241 ~aar~g-lG~lGVIteVTLql~P~~~L~~~~~~-~--~~~~~~~~~~~~ 285 (573)
T PLN02465 241 RLARCG-LGGLGVVAEVTLQCVPAHRLVEHTFV-S--NRKEIKKNHKKW 285 (573)
T ss_pred hHhhcc-CCCCcEEEEEEEEEEecCceEEEEEE-e--cHHHHHHHHHHH
Confidence 999998 79999999999999999876433222 1 344444444443
No 10
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=7.1e-32 Score=291.25 Aligned_cols=197 Identities=22% Similarity=0.310 Sum_probs=172.7
Q ss_pred CCCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCC
Q 008842 79 VPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGAT 157 (551)
Q Consensus 79 ~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~ 157 (551)
...|.+|++|+|++||+++|++|+++++|+++||+||++.|.+.+..+ +++|||++||+| ++|+++++++||||++
T Consensus 53 ~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~~---gividl~~ln~I~~id~~~~~v~VeaGv~ 129 (499)
T PRK11230 53 RTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLEK---GVLLVMARFNRILDINPVGRRARVQPGVR 129 (499)
T ss_pred CCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCCC---cEEEEcccCCCceEEcCCCCEEEEcCCcc
Confidence 358999999999999999999999999999999999999877765323 499999999998 9999999999999999
Q ss_pred HHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEccC-----CCchhHHH
Q 008842 158 LGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREA-----MGEDVFWA 232 (551)
Q Consensus 158 ~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~~-----~~~dLf~a 232 (551)
+.+|.++|.++|+.+...++.....+|||.+++++.|+.+.+||.++|+|+++|||++||++++++. .++||+|+
T Consensus 130 ~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l 209 (499)
T PRK11230 130 NLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLAL 209 (499)
T ss_pred HHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhh
Confidence 9999999999996544445555567899999999999999999999999999999999999999862 37899999
Q ss_pred hhcCCCCcceeeEEEEEeeeecCceEEEEEEEcCCCHhHHHHHHHHHH
Q 008842 233 IRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQ 280 (551)
Q Consensus 233 ~rG~g~g~fGiVt~~~~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (551)
++|+ .|+|||||+++||++|.|+....+.+.++ +.+++.+++..+.
T Consensus 210 ~~Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~-~~~~a~~~~~~~~ 255 (499)
T PRK11230 210 FTGS-EGMLGVVTEVTVKLLPKPPVARVLLASFD-SVEKAGLAVGDII 255 (499)
T ss_pred hccC-CCccEEEEEEEEEEEcCCcceEEEEEECC-CHHHHHHHHHHHH
Confidence 9998 79999999999999999988777767665 5666666665543
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=2.5e-30 Score=274.63 Aligned_cols=192 Identities=24% Similarity=0.305 Sum_probs=167.6
Q ss_pred EEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHHHHH
Q 008842 85 IILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGETYS 163 (551)
Q Consensus 85 vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~ 163 (551)
||+|+|++||+++|++|+++++|+++||||||+.|.+++. ++ +++|||++||+| ++|+++.+++||||+++.+|.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~-~~--~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~ 77 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPE-EG--GLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQ 77 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCC-CC--eEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHH
Confidence 5789999999999999999999999999999998877763 33 599999999998 9999999999999999999999
Q ss_pred HHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc------CCCchhHHHhhcCC
Q 008842 164 AISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE------AMGEDVFWAIRGGG 237 (551)
Q Consensus 164 ~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~------~~~~dLf~a~rG~g 237 (551)
+|.++|+.+++.+++....+|||.+.+++.|..+.+||.++|+|++++||++||+++++. ..++||+|.+.|+
T Consensus 78 ~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs- 156 (413)
T TIGR00387 78 AVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGS- 156 (413)
T ss_pred HHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccC-
Confidence 999999655444555556789999999999999999999999999999999999999874 2367999999998
Q ss_pred CCcceeeEEEEEeeeecCceEEEEEEEcCCCHhHHHHHHHHHHH
Q 008842 238 GGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQH 281 (551)
Q Consensus 238 ~g~fGiVt~~~~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (551)
.|+|||||+++||++|.|+....+.+.++ +.+++.+++..+..
T Consensus 157 ~GtlGiit~~~lkl~p~p~~~~~~~~~f~-~~~~~~~~~~~~~~ 199 (413)
T TIGR00387 157 EGTLGIVTEATLKLLPKPENIVVALAFFD-SIEKAMQAVYDIIA 199 (413)
T ss_pred CccceEEEEEEEEeecCCCccEEEEEECC-CHHHHHHHHHHHHh
Confidence 79999999999999999988766666665 66777777665543
No 12
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=3e-29 Score=252.96 Aligned_cols=174 Identities=22% Similarity=0.390 Sum_probs=152.0
Q ss_pred CCCCCceEEEeeCCHHHHHHHHHHHHhC--CCeEEEEcCCCCCCCCccccCCCCeEEEEEcC---CCCce-EEeCCCCEE
Q 008842 77 SSVPKPVAIILPESIDQLANSVLCCRNE--SMELRVRCGGHSYEGTSSFSSDGASFVILDMS---NLNKI-SVDLESETA 150 (551)
Q Consensus 77 ~~~~~P~~vv~p~s~~dv~~~v~~a~~~--~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~---~l~~i-~~d~~~~~v 150 (551)
..+..|.+|..|+|++||+.++|.|... ++||++||+|||+.|.++...+| ++|.|. .|+++ .+..++..+
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~~G---vvV~m~~~~~~~~~~~~~~~~~yv 135 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATRGG---VVVCMDSSLLMKDVPVLVVDDLYV 135 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCCCC---eEEEEehhhccCCCceeecccceE
Confidence 4457999999999999999999999998 89999999999999999875444 665554 35665 566677899
Q ss_pred EEecCCCHHHHHHHHHHcCC--cccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc-CCCc
Q 008842 151 WVQGGATLGETYSAISEASN--THGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE-AMGE 227 (551)
Q Consensus 151 ~v~~G~~~~~l~~~l~~~g~--~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~-~~~~ 227 (551)
.|.||..|-||.+++.++|+ ......+. .+|||.++.+|+|....+||...+||++++||+++|++++++ ..|+
T Consensus 136 dV~~g~~Widll~~t~e~GL~p~swtDyl~---ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~ 212 (505)
T KOG1231|consen 136 DVSAGTLWIDLLDYTLEYGLSPFSWTDYLP---LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANS 212 (505)
T ss_pred EeeCChhHHHHHHHHHHcCCCccCcCCccc---eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCc
Confidence 99999999999999999885 22222332 779999999999999999999999999999999999999998 6899
Q ss_pred hhHHHhhcCCCCcceeeEEEEEeeeecCce
Q 008842 228 DVFWAIRGGGGGVWGIVYAWKIKLLQVPRV 257 (551)
Q Consensus 228 dLf~a~rG~g~g~fGiVt~~~~~l~p~p~~ 257 (551)
+||.++-|| .|.|||||+++++|+|+|+.
T Consensus 213 ~lf~~vlGg-lGqfGIITrArI~le~aP~~ 241 (505)
T KOG1231|consen 213 NLFFLVLGG-LGQFGIITRARIKLEPAPKR 241 (505)
T ss_pred eeeeeeecc-CcceeeEEEEEEEeccCCcc
Confidence 999999998 99999999999999999954
No 13
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.5e-29 Score=259.89 Aligned_cols=182 Identities=24% Similarity=0.324 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCC-CCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHHHHHHHHH
Q 008842 90 SIDQLANSVLCCRNESMELRVRCGGH-SYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGETYSAISE 167 (551)
Q Consensus 90 s~~dv~~~v~~a~~~~~~~~vrggGh-s~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~ 167 (551)
.++||+++|++|+++++|+++||||| ++.|.+ . ++ ++|||++||+| ++|+++.+|+|++|+++.||.++|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~-~--~~---~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA-L--AG---EVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC-C--CC---eEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHH
Confidence 47999999999999999999999997 455552 2 33 79999999998 99999999999999999999999999
Q ss_pred cCCcccccC-CCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc------CCCchhHHHhhcCCCCc
Q 008842 168 ASNTHGFSA-GSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE------AMGEDVFWAIRGGGGGV 240 (551)
Q Consensus 168 ~g~~~~~~~-g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~------~~~~dLf~a~rG~g~g~ 240 (551)
+|+.+++.+ ..+...+|||++++|++|+.+.+||..+|+|+++++|++||++++++ ..++||||+++|+ .|+
T Consensus 77 ~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs-~Gt 155 (352)
T PRK11282 77 AGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS-LGT 155 (352)
T ss_pred cCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC-Cch
Confidence 997666644 34556889999999999999999999999999999999999999874 2468999999999 799
Q ss_pred ceeeEEEEEeeeecCceEEEEEEEcCCCHhHHHHHHHHHH
Q 008842 241 WGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQ 280 (551)
Q Consensus 241 fGiVt~~~~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (551)
|||||+++||++|.|+....+.+.+ +.+++.+.+.++.
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~--~~~~a~~~~~~~~ 193 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEM--DAAEALRKLNEWG 193 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEec--CHHHHHHHHHHHh
Confidence 9999999999999998766655544 2344455555443
No 14
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=2.2e-27 Score=214.60 Aligned_cols=138 Identities=38% Similarity=0.584 Sum_probs=126.6
Q ss_pred ceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCc-eEEeCCCCEEEEecCCCHHH
Q 008842 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNK-ISVDLESETAWVQGGATLGE 160 (551)
Q Consensus 82 P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~-i~~d~~~~~v~v~~G~~~~~ 160 (551)
|.+|++|+|++||+++|++|+++++++.+||+||++.+.+.. .+ +++|||++|++ +++|+++++++|++|++|.|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~--~~--~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSD--EG--GIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSS--TT--EEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCccccccc--CC--cEEEeeccccccccccccceeEEEeccccchh
Confidence 889999999999999999999999999999999999877662 23 59999999999 59999999999999999999
Q ss_pred HHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEcc
Q 008842 161 TYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNRE 223 (551)
Q Consensus 161 l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~ 223 (551)
|+++|.++|+.+.+.++.+..+++||++.+|++|..++.||..+|+|+++++|++||++++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999998888655566888888999999999999999999999999999999999999999874
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=1.4e-23 Score=221.08 Aligned_cols=203 Identities=16% Similarity=0.205 Sum_probs=163.7
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCC--CeEEEEEcCCCCce-EEeCCCCEEEEecCC
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDG--ASFVILDMSNLNKI-SVDLESETAWVQGGA 156 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g--~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~ 156 (551)
..|.+||+|.|++||+++|+.|++++++|++||||+++.|.+.+..++ .++|+|||.+||+| +|| ++.+++|+||+
T Consensus 37 g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGV 115 (564)
T PRK11183 37 GDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGT 115 (564)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCC
Confidence 579999999999999999999999999999999999999988873221 13699999999999 788 56789999999
Q ss_pred CHHHHHHHHHHcCCccccc-CCCCCccccccccccCCccccccccCccccceeeeEEEecCCcE-------EEccC----
Q 008842 157 TLGETYSAISEASNTHGFS-AGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRL-------LNREA---- 224 (551)
Q Consensus 157 ~~~~l~~~l~~~g~~~~~~-~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i-------~~~~~---- 224 (551)
++.+|.++|+++|+..... +.+|-.++|||.++.++-|....+||...++++. ++|+++|++ +....
T Consensus 116 tl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~ 194 (564)
T PRK11183 116 TLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEE 194 (564)
T ss_pred cHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHH
Confidence 9999999999998643322 2333345688999999999999999999999999 999999999 32110
Q ss_pred -------CCc----------------------------------hhHHHh--hcCCCCcceeeEEEEEeeeecCceEEEE
Q 008842 225 -------MGE----------------------------------DVFWAI--RGGGGGVWGIVYAWKIKLLQVPRVVSGF 261 (551)
Q Consensus 225 -------~~~----------------------------------dLf~a~--rG~g~g~fGiVt~~~~~l~p~p~~~~~~ 261 (551)
.+. |+...+ .|+ .|.+||| +++|+|+|.|+....|
T Consensus 195 il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~vf 272 (564)
T PRK11183 195 ILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQVF 272 (564)
T ss_pred HHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCC-CceEEEE-EEEeccccCCCcceEE
Confidence 122 776666 777 8999999 9999999999998888
Q ss_pred EEEcCCCHhHHHHHHHHHHHHCCCCC
Q 008842 262 VLSRPGSKQHVAKLVNKWQHVAPNLT 287 (551)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~p 287 (551)
.+.++ +.+.+.++...+..-...+|
T Consensus 273 ~ig~n-~~~~~~~~rr~il~~~~~lP 297 (564)
T PRK11183 273 YIGTN-DPAVLTEIRRHILANFKNLP 297 (564)
T ss_pred EEeCC-CHHHHHHHHHHHHHhCCCCc
Confidence 88776 66777777665543323344
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=3.3e-24 Score=217.70 Aligned_cols=162 Identities=20% Similarity=0.232 Sum_probs=135.5
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCC-CCceEEeCCCCEEEEecCCCH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSN-LNKISVDLESETAWVQGGATL 158 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~-l~~i~~d~~~~~v~v~~G~~~ 158 (551)
..|.+++.|+|++||+++|++|+++++|+.++|||||+. ..+++.++++|||++ |+.|++ ++.+++|+||++|
T Consensus 29 g~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll----~~d~g~~gvvI~l~~~l~~i~~--~~~~v~v~aG~~~ 102 (298)
T PRK13905 29 GPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLL----VRDGGIRGVVIRLGKGLNEIEV--EGNRITAGAGAPL 102 (298)
T ss_pred ceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEE----ecCCCcceEEEEecCCcceEEe--cCCEEEEECCCcH
Confidence 578899999999999999999999999999999999973 333334579999998 999855 4578999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccC-ccccceeeeEEEecCCcEEEccCCCchhHHHhhcCC
Q 008842 159 GETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYG-LAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGG 237 (551)
Q Consensus 159 ~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g 237 (551)
.+|.+++.++|+. |.+..+|+.| ..||+.+++.+.|| .++|+|+++++|++||++++.+ +.|++|++|++.
T Consensus 103 ~~L~~~l~~~Gl~-----gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~ 174 (298)
T PRK13905 103 IKLARFAAEAGLS-----GLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSA 174 (298)
T ss_pred HHHHHHHHHcCCC-----cchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcccc
Confidence 9999999998852 4444455555 34566777777787 7999999999999999999986 569999999985
Q ss_pred CC-cceeeEEEEEeeeecC
Q 008842 238 GG-VWGIVYAWKIKLLQVP 255 (551)
Q Consensus 238 ~g-~fGiVt~~~~~l~p~p 255 (551)
.+ .+||||+++||++|..
T Consensus 175 ~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 175 LQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 54 3899999999999873
No 17
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=2.9e-21 Score=195.44 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=134.4
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCC-CCceEEeCCCCEEEEecCCCH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSN-LNKISVDLESETAWVQGGATL 158 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~-l~~i~~d~~~~~v~v~~G~~~ 158 (551)
..|.+++.|+|++||++++++|+++++|+.++|||||+ +..+++.++++|+|++ ++.+.++ +.+++||||+.|
T Consensus 34 g~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNl----lv~d~g~~gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 34 GPADLLVRPADPDALSALLRAVRELGVPLSILGGGANT----LVADAGVRGVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcce----eecCCCEeeEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 57899999999999999999999999999999999998 3434455679999977 5666543 468999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCCcccccc-ccCccccceeeeEEEecCCcEEEccCCCchhHHHhhcCC
Q 008842 159 GETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSR-KYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGG 237 (551)
Q Consensus 159 ~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~-~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g 237 (551)
.+|.+++.++|+. |.++.+||+| +.||+..++.+ +||.++|+|+++++|+++| .++.. ..|+.|++|++.
T Consensus 108 ~~L~~~~~~~GL~-----GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHGLV-----GMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcCCc-----ccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceec
Confidence 9999999998853 7888888888 56788888875 6668999999999999999 54444 579999999974
Q ss_pred CCcceeeEEEEEeeeec
Q 008842 238 GGVWGIVYAWKIKLLQV 254 (551)
Q Consensus 238 ~g~fGiVt~~~~~l~p~ 254 (551)
.+..||||+++||++|.
T Consensus 179 ~~~~~II~~a~~~L~~~ 195 (302)
T PRK14652 179 LPPGAVITRVEVRLRPG 195 (302)
T ss_pred cCCCeEEEEEEEEEecC
Confidence 34447999999999985
No 18
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.85 E-value=2.4e-21 Score=191.31 Aligned_cols=190 Identities=20% Similarity=0.277 Sum_probs=171.0
Q ss_pred cccccccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCC
Q 008842 68 SIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLE 146 (551)
Q Consensus 68 ~~~n~r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~ 146 (551)
..+|..|.......-..|.+|+|+++|++++++|+++++.|++.||-+.+-|.|.+-.|. |||+|.+||+| ++|+-
T Consensus 76 ~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDE---iVlsl~~mNKi~sfDev 152 (511)
T KOG1232|consen 76 ENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDE---IVLSLGLMNKILSFDEV 152 (511)
T ss_pred hhhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccchHH---Hhhhhhhhccccccccc
Confidence 456777776666788899999999999999999999999999999999999888886565 99999999999 99999
Q ss_pred CCEEEEecCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEc----
Q 008842 147 SETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNR---- 222 (551)
Q Consensus 147 ~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~---- 222 (551)
.+++++++|+.+.++..+|+++|+.+++.-|.-+++-|||.+++.+-|..--+||...-+|+++|+|+|+|+++..
T Consensus 153 sGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~sl 232 (511)
T KOG1232|consen 153 SGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSL 232 (511)
T ss_pred cceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhh
Confidence 9999999999999999999999987777788888888999999999999999999999999999999999999864
Q ss_pred --cCCCchhHHHhhcCCCCcceeeEEEEEeeeecCceEEEE
Q 008842 223 --EAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGF 261 (551)
Q Consensus 223 --~~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~p~~~~~~ 261 (551)
..++.|+-....|+ .|++||||++.+-+.|.|+.+...
T Consensus 233 RKDNTgydlkhLFIGS-EGtlGVvT~vSil~~~kpksvn~a 272 (511)
T KOG1232|consen 233 RKDNTGYDLKHLFIGS-EGTLGVVTKVSILAPPKPKSVNVA 272 (511)
T ss_pred cccCccccchhheecC-CceeeEEeeEEEeecCCCcceeEE
Confidence 23578888888988 899999999999999999876443
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=7.4e-21 Score=192.92 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=132.1
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEeCCCCEEEEecCCCHH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLG 159 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 159 (551)
..|.+++.|+|++||++++++|+++++|+.++|||||+. ..+.+.++++|+|++|++|+++ +.+++|++|+.|.
T Consensus 35 g~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll----~~d~g~~GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 35 GKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI----IKDGGIRGITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE----EeCCCeeEEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 579999999999999999999999999999999999983 3334445799999889998876 4689999999999
Q ss_pred HHHHHHHHcCC-cccccCCCCCccccccccccCCccccccccC-ccccceeeeEEEecCCcEEEccCCCchhHHHhhcCC
Q 008842 160 ETYSAISEASN-THGFSAGSCPTVGVGGHIGGGGFGLLSRKYG-LAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGG 237 (551)
Q Consensus 160 ~l~~~l~~~g~-~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g 237 (551)
+|.+++.++|+ ++.++.|.+++|| |+..++.+.|| ...|.+.+++||++||++++.+ ..|+.|++|.+.
T Consensus 109 ~L~~~~~~~gl~Gle~~~giPGtVG-------Gav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~ 179 (305)
T PRK12436 109 DVSRIALDHNLTGLEFACGIPGSVG-------GALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSV 179 (305)
T ss_pred HHHHHHHHcCCccchhhcCCccchh-------HHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCc
Confidence 99999999986 4555666666544 44455555577 5678888999999999999988 678999999875
Q ss_pred CC-cceeeEEEEEeeeec
Q 008842 238 GG-VWGIVYAWKIKLLQV 254 (551)
Q Consensus 238 ~g-~fGiVt~~~~~l~p~ 254 (551)
.. ...||++++|++.+.
T Consensus 180 ~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 180 FANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCCEEEEEEEEEEcCC
Confidence 43 256999999999765
No 20
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=1.2e-20 Score=194.31 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=139.3
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEeCCCCEEEEecCCCHH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLG 159 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 159 (551)
..+.+++.|+|++||++++++|+++++|+.++|||||+ +..++|.+++||+++ ++.++++.+..+++|++|+.|.
T Consensus 31 g~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNl----Lv~D~g~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 31 GPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNL----VIADDGFDGTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeE----eECCCCccEEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 56888999999999999999999999999999999998 455566678999997 5888887667799999999999
Q ss_pred HHHHHHHHcCC-cccccCCCCCccccccccccCCccccccccCccccceeeeEEEecC-CcEEEccCCCchhHHHhhcCC
Q 008842 160 ETYSAISEASN-THGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDAN-GRLLNREAMGEDVFWAIRGGG 237 (551)
Q Consensus 160 ~l~~~l~~~g~-~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~-G~i~~~~~~~~dLf~a~rG~g 237 (551)
+|.+++.++|+ ++.+..|.+++||.+..+..|++|. .+.|.|.++++++.+ |++++.+ +.||+|++|++.
T Consensus 106 ~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~------ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~ 177 (363)
T PRK13903 106 DVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQ------EVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSV 177 (363)
T ss_pred HHHHHHHHcCCccccccCCCCcchhhHhhcCCChhHH------HHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccc
Confidence 99999999996 4667788888887766676666654 578999999999965 9999887 789999999963
Q ss_pred C--CcceeeEEEEEeeeecC
Q 008842 238 G--GVWGIVYAWKIKLLQVP 255 (551)
Q Consensus 238 ~--g~fGiVt~~~~~l~p~p 255 (551)
. ++++|||+++|++.|..
T Consensus 178 f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 178 LKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cCCCCCEEEEEEEEEEEcCC
Confidence 2 24789999999999873
No 21
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.84 E-value=1.2e-20 Score=189.81 Aligned_cols=161 Identities=23% Similarity=0.245 Sum_probs=138.7
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEeCCCCEEEEecCCCHH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLG 159 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 159 (551)
..|.++++|+|++||++++++|+++++|+.++|||||+. ..+.+.++++|++++|+++.+++ +.+++|+||+.|.
T Consensus 11 g~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll----~~d~~~~gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 11 GNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLL----ILDDGRGGVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred ceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEE----EccCCcCeEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 578999999999999999999999999999999999984 32333346999999998887766 5789999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCcccc-ceeeeEEEecCCcEEEccCCCchhHHHhhcCCC
Q 008842 160 ETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAAD-NVVDALLMDANGRLLNREAMGEDVFWAIRGGGG 238 (551)
Q Consensus 160 ~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D-~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g~ 238 (551)
+|.+++.++|+. |.+..+|++| +.||+.+++.+.||..++ .|++++||++||++++.+ ..|+.|++|.+..
T Consensus 86 ~l~~~~~~~Gl~-----GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNGLS-----GLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCCCc-----ccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCcccc
Confidence 999999998853 8888889988 578999999999999875 679999999999999887 6799999998743
Q ss_pred Cc-c-eeeEEEEEeeee
Q 008842 239 GV-W-GIVYAWKIKLLQ 253 (551)
Q Consensus 239 g~-f-GiVt~~~~~l~p 253 (551)
.. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 32 2 599999999844
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.2e-20 Score=191.50 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=136.2
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEeCCCCEEEEecCCCHH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLG 159 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 159 (551)
..+.+++.|+|++||+++|++|+++++|+.++|+|||. +..+++.++++|+|++|++|+++. .+++||||+.|.
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNl----l~~d~g~~GvvI~l~~l~~i~~~~--~~v~v~aG~~~~ 108 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNI----IIREGGIRGIVISLLSLDHIEVSD--DAIIAGSGAAII 108 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeE----eecCCCcceEEEEecCccceEEeC--CEEEEECCCcHH
Confidence 46888999999999999999999999999999999998 343444557999998899998763 589999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCCccccccccC-ccccceeeeEEEecCCcEEEccCCCchhHHHhhcCCC
Q 008842 160 ETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYG-LAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGG 238 (551)
Q Consensus 160 ~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g~ 238 (551)
+|.+++.++|+. |.+..+||.| ..||+..++.+.|| .++|+|+++++|+++|++++.+ ..|+.|++|.+..
T Consensus 109 ~l~~~~~~~Gl~-----GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~ 180 (307)
T PRK13906 109 DVSRVARDYALT-----GLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSII 180 (307)
T ss_pred HHHHHHHHcCCc-----cchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccC
Confidence 999999998853 6666677877 55777888888885 8899999999999999999987 6789999998743
Q ss_pred Cc-ceeeEEEEEeeee
Q 008842 239 GV-WGIVYAWKIKLLQ 253 (551)
Q Consensus 239 g~-fGiVt~~~~~l~p 253 (551)
.. --||++++|++.|
T Consensus 181 ~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 181 QKEHLVVLEAAFTLAP 196 (307)
T ss_pred CCCCEEEEEEEEEECC
Confidence 32 2499999999986
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=1.1e-18 Score=176.16 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=133.6
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCC-ceEEeCCCCEEEEecCCCH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLN-KISVDLESETAWVQGGATL 158 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~-~i~~d~~~~~v~v~~G~~~ 158 (551)
....+++.|+|++|+++++++|+++++|+.++|+|||+ +..+.+.+|++|++++++ ++..+.+..+++|++|+.|
T Consensus 19 g~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNl----L~~d~g~~GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 19 GPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNL----LVRDEGFDGLVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeE----EEeCCCcCeEEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 46677889999999999999999999999999999998 555555668999998754 6766655558999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEccCCCchhHHHhhcCCC
Q 008842 159 GETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGG 238 (551)
Q Consensus 159 ~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g~ 238 (551)
.+|.+++.++|+. |..+.+||+|.+.|..++......+.++|.|+++++++.+|++++.+ ..||+|++|-+..
T Consensus 95 ~~l~~~~~~~GL~-----GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~~ 167 (295)
T PRK14649 95 AGTARRLAAQGWA-----GLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSVL 167 (295)
T ss_pred HHHHHHHHHcCCc-----cccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceeec
Confidence 9999999998854 67788888884433356665555567899999999999999999886 5699999998743
Q ss_pred Ccc---------eeeEEEEEeeeec
Q 008842 239 GVW---------GIVYAWKIKLLQV 254 (551)
Q Consensus 239 g~f---------GiVt~~~~~l~p~ 254 (551)
-.. -||++++|++.|.
T Consensus 168 ~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 168 KQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ccccccccccCCeEEEEEEEEECCC
Confidence 221 2899999998765
No 24
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=172.70 Aligned_cols=208 Identities=21% Similarity=0.282 Sum_probs=164.0
Q ss_pred cccccccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCe-EEEEEcCCCCce-EEeC
Q 008842 68 SIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGAS-FVILDMSNLNKI-SVDL 145 (551)
Q Consensus 68 ~~~n~r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~-~vvIdl~~l~~i-~~d~ 145 (551)
.++|+|-. .-.+.|..||.|++.+||.++|+.|.+|++-+.+.|||+|..+.-....+..+ -+.+|++.||+| -+|.
T Consensus 148 di~~Lreg-kf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidr 226 (613)
T KOG1233|consen 148 DIINLREG-KFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDR 226 (613)
T ss_pred HHHHHhcC-ccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEecc
Confidence 34555422 23468999999999999999999999999999999999997544333233333 344788899998 8999
Q ss_pred CCCEEEEecCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceeeeEEEecCCcEEEc-c-
Q 008842 146 ESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNR-E- 223 (551)
Q Consensus 146 ~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~-~- 223 (551)
++-++.+++|+.-.+|-+.|.+.|......+-+..-.++||++++.+.|+--+.||.+-|-|+-+++|+|.|.+-+- .
T Consensus 227 eNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~ 306 (613)
T KOG1233|consen 227 ENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQV 306 (613)
T ss_pred ccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcC
Confidence 99999999999999999999988743222222223357999999999999999999999999999999999987642 1
Q ss_pred ---CCCchhHHHhhcCCCCcceeeEEEEEeeeecCceEEEEEEEcCCCHhHHHHHHHH
Q 008842 224 ---AMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNK 278 (551)
Q Consensus 224 ---~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 278 (551)
+.+||+-.-+-|+ .|++||||++++|..|+|+.-..-.+.|+ +.+.-...++.
T Consensus 307 PRmS~GPDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFP-NFEqGV~f~RE 362 (613)
T KOG1233|consen 307 PRMSSGPDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFP-NFEQGVNFFRE 362 (613)
T ss_pred CcccCCCCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccC-cHHHHHHHHHH
Confidence 3689999889888 89999999999999999976543334454 55665555554
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=1.6e-16 Score=159.89 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=130.2
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEeCCCCEEEEecCCCHH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLG 159 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 159 (551)
....+++.|+|++|++++++++++ ++|+.+.|+|+|. +.++.+.+++||.+.+|+.|+++. ..++|+||+.|.
T Consensus 32 G~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNl----Lv~d~g~~gvVI~l~~~~~i~i~~--~~v~v~AG~~l~ 104 (297)
T PRK14653 32 GPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNV----LPKDEPMDFVVVSTERLDDIFVDN--DKIICESGLSLK 104 (297)
T ss_pred cEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeE----EEecCCccEEEEEeCCcCceEEeC--CEEEEeCCCcHH
Confidence 355678899999999999999999 9999999999998 555555678999997899998863 589999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCc-cccceeeeEEEecCCcEEEccCCCchhHHHhhcCCC
Q 008842 160 ETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGL-AADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGG 238 (551)
Q Consensus 160 ~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g~ 238 (551)
+|..++.++|+. |...-+||.|.+ ||+.-++.+.||. +.|.|+++++++ +|++++.+ ..|+-|.+|.+..
T Consensus 105 ~L~~~~~~~GL~-----GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~ 175 (297)
T PRK14653 105 KLCLVAAKNGLS-----GFENAYGIPGSV-GGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIF 175 (297)
T ss_pred HHHHHHHHCCCc-----chhhhcCCchhH-HHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccC
Confidence 999999999863 444555555543 5666677777887 889999999999 78888776 5689999997643
Q ss_pred Cc--ceeeEEEEEeeeec
Q 008842 239 GV--WGIVYAWKIKLLQV 254 (551)
Q Consensus 239 g~--fGiVt~~~~~l~p~ 254 (551)
.. --|||+++|++.|.
T Consensus 176 ~~~~~~iI~~a~f~L~~~ 193 (297)
T PRK14653 176 KEEKDLIILRVTFKLKKG 193 (297)
T ss_pred CCCCcEEEEEEEEEEecC
Confidence 32 12999999999875
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=2.4e-15 Score=148.63 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=137.7
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEeCCCCEEEEecCCCHH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLG 159 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~ 159 (551)
.....++.|++++|+.++++.+.+.++|+.+.|+|+|. +..+++.++++|.+.+++.++++.+...++|++|+.|.
T Consensus 19 g~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNl----Lv~d~g~~gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~ 94 (291)
T COG0812 19 GPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNL----LVRDGGIGGVVIKLGKLNFIEIEGDDGLIEAGAGAPWH 94 (291)
T ss_pred cceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceE----EEecCCCceEEEEcccccceeeeccCCeEEEccCCcHH
Confidence 46677899999999999999999999999999999997 66667777899999999998888777799999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCc-cccceeeeEEEecCCcEEEccCCCchhHHHhhcCCC
Q 008842 160 ETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGL-AADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGG 238 (551)
Q Consensus 160 ~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g~ 238 (551)
+|.+++.++|+. |...-+||+|.+ ||+.-++.+.||. +.|.+.++++++.+|++.+.+ +.||-|+||-+..
T Consensus 95 ~l~~~~~~~gl~-----GlE~l~gIPGsv-Ggav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S~f 166 (291)
T COG0812 95 DLVRFALENGLS-----GLEFLAGIPGSV-GGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTSPF 166 (291)
T ss_pred HHHHHHHHcCCc-----chhhhcCCCccc-chhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCcccccCcC
Confidence 999999998863 455555555544 4556666777775 689999999999999999987 7899999998754
Q ss_pred Ccc-eeeEEEEEeeeec
Q 008842 239 GVW-GIVYAWKIKLLQV 254 (551)
Q Consensus 239 g~f-GiVt~~~~~l~p~ 254 (551)
..- .||++++|++.|-
T Consensus 167 ~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 167 KKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCEEEEEEEEEeCCC
Confidence 433 8999999999876
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=3.5e-15 Score=149.80 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=132.2
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCC-CeEEEEEcCCCCceEEeCCCCEEEEecCCCH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDG-ASFVILDMSNLNKISVDLESETAWVQGGATL 158 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g-~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~ 158 (551)
....+++.|+|.+|+++++++++++++|+.+.|+|+|. +..++| .+++||.+.+|+.++++. ..++|++|+.|
T Consensus 31 G~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNl----Lv~D~g~~~g~vi~~~~~~~i~~~~--~~v~a~AG~~~ 104 (302)
T PRK14650 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNI----LINDEEEIDFPIIYTGHLNKIEIHD--NQIVAECGTNF 104 (302)
T ss_pred cEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEE----EEECCCccceEEEEECCcCcEEEeC--CEEEEEeCCcH
Confidence 34556788999999999999999999999999999998 666666 678999987799998764 47999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccC-ccccceeeeEEEecCCcEEEccCCCchhHHHhhcCC
Q 008842 159 GETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYG-LAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGG 237 (551)
Q Consensus 159 ~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g 237 (551)
.+|..++.++|+. |....+||+|.+ ||+.=++.+.|| -+.|.|.++++++.+|++++.+ ..|+-|++|-+.
T Consensus 105 ~~l~~~~~~~gl~-----GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~ 176 (302)
T PRK14650 105 EDLCKFALQNELS-----GLEFIYGLPGTL-GGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISP 176 (302)
T ss_pred HHHHHHHHHcCCc-----hhhhhcCCCcch-hHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCccccccc
Confidence 9999999999864 555556666655 455566677777 4689999999999999998876 678999999874
Q ss_pred CCc-ceeeEEEEEeeeecC
Q 008842 238 GGV-WGIVYAWKIKLLQVP 255 (551)
Q Consensus 238 ~g~-fGiVt~~~~~l~p~p 255 (551)
... -.||++++|++.|..
T Consensus 177 f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 177 FQNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 322 249999999998753
No 28
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.62 E-value=2.7e-16 Score=113.52 Aligned_cols=47 Identities=49% Similarity=0.818 Sum_probs=34.0
Q ss_pred eeccCCCCccCccccccCCCCCchhHHHHHHHhhhhhcccHHHHHHHHhhcCCCCcccCCCCCC
Q 008842 475 AYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIP 538 (551)
Q Consensus 475 ~Y~Ny~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y~G~n~~RL~~IK~kyDP~~vF~~~qsI~ 538 (551)
+|+||+|.++.. +.|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~~-----------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG-----------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS-----------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch-----------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 599999987521 36889999999999999999999999999999997
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.61 E-value=4.2e-15 Score=151.47 Aligned_cols=161 Identities=16% Similarity=0.088 Sum_probs=130.7
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEe--CCC-CEEEEecCC
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVD--LES-ETAWVQGGA 156 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d--~~~-~~v~v~~G~ 156 (551)
.....++.|+|++|+++++++|+++++|+.+.|+|+|. +.++ +.+|++|.+ +|++++++ .++ ..++|++|+
T Consensus 19 G~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNl----Lv~D-~~~g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 19 ARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNV----LFTE-DFDGTVLLN-RIKGIEVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred cEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEE----EECC-CCCEEEEEe-cCCceEEEecCCCeEEEEEEcCC
Confidence 35566888999999999999999999999999999998 5554 577899998 49999873 222 379999999
Q ss_pred CHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccC-ccccceeeeEEEecC-CcEEEccCCCchhHHHhh
Q 008842 157 TLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYG-LAADNVVDALLMDAN-GRLLNREAMGEDVFWAIR 234 (551)
Q Consensus 157 ~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G-~~~D~v~~~~vV~~~-G~i~~~~~~~~dLf~a~r 234 (551)
.|.+|.+++.++|+. |....+||.|.+ ||+.-++.+.|| -..|.|.++++++.+ |++++.+ ..|+.|++|
T Consensus 93 ~~~~l~~~~~~~gl~-----GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR 164 (334)
T PRK00046 93 NWHDLVLWTLQQGMP-----GLENLALIPGTV-GAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYR 164 (334)
T ss_pred cHHHHHHHHHHcCch-----hhHHhcCCCcch-hHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcccc
Confidence 999999999999864 555666666655 456666677777 467999999999987 9998887 689999999
Q ss_pred cCCCCc----ceeeEEEEEeeeec
Q 008842 235 GGGGGV----WGIVYAWKIKLLQV 254 (551)
Q Consensus 235 G~g~g~----fGiVt~~~~~l~p~ 254 (551)
-+.... --||++++|++.|-
T Consensus 165 ~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 165 DSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccCCCCCcCCEEEEEEEEEecCC
Confidence 874332 23999999999885
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.58 E-value=1.8e-14 Score=146.49 Aligned_cols=163 Identities=16% Similarity=0.182 Sum_probs=129.2
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEe---CCCCEEEEecCC
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVD---LESETAWVQGGA 156 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d---~~~~~v~v~~G~ 156 (551)
.....++.|+|.+|+++++++++++++|+.+.|+|+|. +..++|.+|+||.+.+|+.+++. .+...++|++|+
T Consensus 28 G~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNl----L~~D~g~~G~VI~l~~~~~i~i~~~~~~~~~v~agAG~ 103 (354)
T PRK14648 28 GAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNV----LIADEGVPGLMLSLRRFRSLHTQTQRDGSVLVHAGAGL 103 (354)
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEE----EEeCCCccEEEEEeCCcCceEEeeccCCcEEEEEEeCC
Confidence 35566888999999999999999999999999999998 66666678899999779988752 222479999999
Q ss_pred CHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCc-cccceeeeEEE--------------------ec
Q 008842 157 TLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGL-AADNVVDALLM--------------------DA 215 (551)
Q Consensus 157 ~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~-~~D~v~~~~vV--------------------~~ 215 (551)
.|.+|.+++.++|+. |....+||+|.+ ||+.=++.+.||. +.|.|.+++++ +.
T Consensus 104 ~~~~Lv~~~~~~gl~-----GlE~laGIPGTV-GGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~ 177 (354)
T PRK14648 104 PVAALLAFCAHHALR-----GLETFAGLPGSV-GGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDK 177 (354)
T ss_pred cHHHHHHHHHHcCCc-----chhhhcCCCcch-hhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccC
Confidence 999999999999864 556666666655 4555666777874 67999999999 45
Q ss_pred CCcE-------------EEccCCCchhHHHhhcCCCCc---------ceeeEEEEEeeeec
Q 008842 216 NGRL-------------LNREAMGEDVFWAIRGGGGGV---------WGIVYAWKIKLLQV 254 (551)
Q Consensus 216 ~G~i-------------~~~~~~~~dLf~a~rG~g~g~---------fGiVt~~~~~l~p~ 254 (551)
+|++ ++.+ ..|+.|++|-+.... --||++++|++.|.
T Consensus 178 ~g~~~~~~~~~~~~~~~~~~~--~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~ 236 (354)
T PRK14648 178 RGECLGLDGGPFTCSSFQTVF--ARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPG 236 (354)
T ss_pred CCceecccccccccccceEec--HHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCC
Confidence 6776 2333 578999999875432 13999999999875
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.48 E-value=7.1e-13 Score=131.35 Aligned_cols=151 Identities=20% Similarity=0.271 Sum_probs=119.4
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCC-CCceEEeCCCCEEEEecCCCH
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSN-LNKISVDLESETAWVQGGATL 158 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~-l~~i~~d~~~~~v~v~~G~~~ 158 (551)
..|+..+.|+|++|+++++ ++|+.+.|+|+|. +..++|.+++||.+.+ ++.++++. +|++|+.|
T Consensus 18 GG~A~~~~p~~~~~l~~~~------~~p~~vlG~GSNl----L~~D~g~~g~vI~l~~~~~~~~~~~-----~a~AG~~~ 82 (273)
T PRK14651 18 GGPAELWTVETHEQLAEAT------EAPYRVLGGGSNL----LVSDAGVPERVIRLGGEFAEWDLDG-----WVGGGVPL 82 (273)
T ss_pred CceEEEEecCCHHHHHHHH------CCCeEEEeceeEE----EEcCCCcceEEEEECCcceeEeECC-----EEECCCcH
Confidence 4555555599999999988 5899999999998 6666667789999866 66665532 69999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccC-ccccceeeeEEEecCCcEEEccCCCchhHHHhhcCC
Q 008842 159 GETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYG-LAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGG 237 (551)
Q Consensus 159 ~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g 237 (551)
.+|.+++.++|+. |...-+||.|.+ ||+.=++.+.|| -+.|.|.++++++ +|++++.+ ..|+.|++|.+.
T Consensus 83 ~~l~~~~~~~gl~-----GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~ 153 (273)
T PRK14651 83 PGLVRRAARLGLS-----GLEGLVGIPAQV-GGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSG 153 (273)
T ss_pred HHHHHHHHHCCCc-----chhhhcCCCcch-hhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccC
Confidence 9999999999863 555566666655 455566677777 4689999999997 89999887 689999999874
Q ss_pred CCcceeeEEEEEeeeec
Q 008842 238 GGVWGIVYAWKIKLLQV 254 (551)
Q Consensus 238 ~g~fGiVt~~~~~l~p~ 254 (551)
...--||++++|++.|.
T Consensus 154 ~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 154 LPPGHVVTRVRLKLRPS 170 (273)
T ss_pred CCCCEEEEEEEEEECCC
Confidence 33324999999999875
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.46 E-value=9.2e-14 Score=138.43 Aligned_cols=127 Identities=26% Similarity=0.331 Sum_probs=111.1
Q ss_pred EEEEcCCCCce-EEeCCCCEEEEecCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCCccccccccCccccceee
Q 008842 131 VILDMSNLNKI-SVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVD 209 (551)
Q Consensus 131 vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~ 209 (551)
--|++..|.+| ++|.++.+|+|+|+++++++.++|-+.|+.|++.+- -...++||.+.|-|+-..|.+||+-.|.+.+
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~E-ldDlTvGGLinG~Gies~ShkyGlfq~~~~a 182 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPE-LDDLTVGGLINGVGIESSSHKYGLFQHICTA 182 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecc-cccceecceeeecccccccchhhhHHhhhhe
Confidence 34555555455 899999999999999999999999999987776543 3467899999999999999999999999999
Q ss_pred eEEEecCCcEEEcc--CCCchhHHHhhcCCCCcceeeEEEEEeeeecCceEE
Q 008842 210 ALLMDANGRLLNRE--AMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVS 259 (551)
Q Consensus 210 ~~vV~~~G~i~~~~--~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~p~~~~ 259 (551)
.|||++||+++++. .+++|||+|+-.+ .|++|..+.+++|+.|..+.+.
T Consensus 183 YEvVladGelv~~t~dne~sdLfyaiPWS-qGTlgfLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 183 YEVVLADGELVRVTPDNEHSDLFYAIPWS-QGTLGFLVAATIRIIKVKKYVK 233 (543)
T ss_pred eEEEecCCeEEEecCCcccCceEEEcccc-cCchheeeeeEEEEEeccceEE
Confidence 99999999999986 4789999999999 8999999999999999977653
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.08 E-value=1.9e-09 Score=106.03 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=105.6
Q ss_pred CceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEeCCCCEEEEecCCCHHH
Q 008842 81 KPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGE 160 (551)
Q Consensus 81 ~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~~ 160 (551)
....++.|++.+ + ++|+.+.|+|+|. +..|.+. ..+|-+++|+.++++. .+++|++|+.|.+
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNl----Lv~D~g~-~~vv~~~~~~~~~~~~--~~v~~~AG~~l~~ 79 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNL----LISPNPK-NLAILGKNFDYIKIDG--ECLEIGGATKSGK 79 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEE----EEecCCc-cEEEEccCcCeEEEeC--CEEEEEcCCcHHH
Confidence 334456677776 5 8999999999998 5655554 3444445688888754 4799999999999
Q ss_pred HHHHHHHcCCcccccCCCCCccccccccccCCccccccccC-ccccceeeeEEEecCCcEEEccCCCchhHHHhhcCCCC
Q 008842 161 TYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYG-LAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGG 239 (551)
Q Consensus 161 l~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g~g 239 (551)
|.+++.++|+. |....+||+|.+ ||+.-++.+.|| .+.|.|.++++++ |+ .+ ..|+.|++|-+..
T Consensus 80 l~~~~~~~gl~-----GlE~l~gIPGtV-GGAv~mNaGa~g~ei~d~l~~V~~~~--~~---~~--~~e~~f~YR~S~~- 145 (257)
T PRK13904 80 IFNYAKKNNLG-----GFEFLGKLPGTL-GGLVKMNAGLKEYEISNNLESICTNG--GW---IE--KEDIGFGYRSSGI- 145 (257)
T ss_pred HHHHHHHCCCc-----hhhhhcCCCccH-HHHHHhcCCcCccchheeEEEEEEEe--eE---Ee--HHHCcccccCcCC-
Confidence 99999999864 555555666654 455556667777 4679999999998 42 22 5799999998743
Q ss_pred cceeeEEEEEeeeecC
Q 008842 240 VWGIVYAWKIKLLQVP 255 (551)
Q Consensus 240 ~fGiVt~~~~~l~p~p 255 (551)
-.||++++||+.|..
T Consensus 146 -~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 -NGVILEARFKKTHGF 160 (257)
T ss_pred -CcEEEEEEEEECCCC
Confidence 259999999998853
No 34
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=98.29 E-value=1.4e-06 Score=84.60 Aligned_cols=119 Identities=17% Similarity=0.154 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCceEEEEeecCCccccCCCCCCCC--CCCCCCeEEEEEEEEecC-CCCcchhhHHHHHHHHHHhhccC
Q 008842 391 GIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAF--PHRNGNLFTIQYIVAWYG-EDNDKSNGYIDWIRAFYNAMTPF 467 (551)
Q Consensus 391 ~i~~~~~~~~~~p~~~~~~~~~gGai~~~~~~~taf--phR~~~~~~i~~~~~w~~-~~~~~~~~~~~~i~~~~~~~~~~ 467 (551)
.++++.+.+...+...+.++.+-+...|..+.+.+| |-|++..+.+.++..-+. ..+...+++++.++++ +|.++
T Consensus 77 aL~elr~l~~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~yr~~~~~~~pr~~~~~f~eiEqi--al~ky 154 (257)
T PLN00107 77 FINDIKALRDIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYYRSKDDPAAPRLHEDAMEEIEQM--AILKY 154 (257)
T ss_pred HHHHHHHHHHhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEecccCCccccccHHHHHHHHHHH--HHHhc
Confidence 344444444444444444554444333433333333 458865555544432211 1122334555556554 57888
Q ss_pred cCCCCCceeccCCCCccCccccccCCCCCchhHHHHHHHhhhhhcccHHHHHHHHhhcCCCCcccCCC
Q 008842 468 VSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQ 535 (551)
Q Consensus 468 ~~~~~~g~Y~Ny~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y~G~n~~RL~~IK~kyDP~~vF~~~q 535 (551)
.+..+||+..|....++ .++| ++++++++||+++||+++|.|++
T Consensus 155 gGRPHWGK~h~l~~~~l----------------------~~lY--Pr~~dFlavR~~lDP~G~F~N~y 198 (257)
T PLN00107 155 GALPHWGKNRNAAFDGA----------------------IAKY--KKAGEFLKVKERLDPEGLFSSEW 198 (257)
T ss_pred CCcCCchhccCCCHHHH----------------------HHHC--cCHHHHHHHHHHhCCCCccCCHH
Confidence 88889999988765332 3567 89999999999999999999985
No 35
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=96.14 E-value=0.0053 Score=61.34 Aligned_cols=58 Identities=17% Similarity=0.343 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhccCcCCCCCceeccCCCCccCccccccCCCCCchhHHHHHHHhhhhhcccHHHHHHHHhhcCCCCccc
Q 008842 453 YIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFS 532 (551)
Q Consensus 453 ~~~~i~~~~~~~~~~~~~~~~g~Y~Ny~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y~G~n~~RL~~IK~kyDP~~vF~ 532 (551)
..++.+.+.+.+.++.+..+||++..... +...+.| ++++++.++|+++||+|+|.
T Consensus 197 ~~~~~~~~e~~~~~~ggRpHWgK~~~~~~----------------------~~l~~~Y--p~~~~F~~~r~~~DP~g~F~ 252 (259)
T PF04030_consen 197 YEEFFRAFEQILRKYGGRPHWGKNHTLTA----------------------EQLRKLY--PRLDDFLAVRKKLDPQGVFL 252 (259)
T ss_dssp HHHHHHHHHHHHGGGT-EE-TTS-----H----------------------HHHHHT---TTHHHHHHHHHHH-TT-TT-
T ss_pred HHHHHHHHHHHHHHcCCEECcCcCCCCCH----------------------HHHHHHC--cCHHHHHHHHHHhCCCCCCC
Confidence 45566666666777766667888765432 2233556 99999999999999999998
Q ss_pred CC
Q 008842 533 NQ 534 (551)
Q Consensus 533 ~~ 534 (551)
|+
T Consensus 253 n~ 254 (259)
T PF04030_consen 253 ND 254 (259)
T ss_dssp -H
T ss_pred CH
Confidence 85
No 36
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=94.67 E-value=0.045 Score=51.10 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=50.7
Q ss_pred ceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHH
Q 008842 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGE 160 (551)
Q Consensus 82 P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~ 160 (551)
+...+.|+|.+|+.++++ .. -...+.+||++..-.--.. .-....+||++++.++ .|..+++.+++|+++++.+
T Consensus 2 ~~~~~~P~sl~ea~~ll~--~~--~~a~~vaGgT~l~~~~~~~-~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA--KG--PDARIVAGGTDLGVQMREG-ILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH--HG--TTEEEESS-TTHHHHHHTT-S---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh--cC--CCCEEEeCCCccchhcccC-ccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 456789999999999998 22 3478899999852110000 0012389999986544 3333467899999999999
Q ss_pred HHHH
Q 008842 161 TYSA 164 (551)
Q Consensus 161 l~~~ 164 (551)
+.+.
T Consensus 77 l~~~ 80 (171)
T PF00941_consen 77 LEES 80 (171)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 9885
No 37
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=94.40 E-value=0.17 Score=50.71 Aligned_cols=33 Identities=33% Similarity=0.634 Sum_probs=24.7
Q ss_pred HHHhhhhhcccHHHHHHHHhhcCCCCcccCCCCC
Q 008842 504 RVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGI 537 (551)
Q Consensus 504 ~~~~~~Y~G~n~~RL~~IK~kyDP~~vF~~~qsI 537 (551)
+.|. ..||..++|+++.|++|||.+++.--|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 6685 57799999999999999999999888876
No 38
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.24 E-value=0.23 Score=50.58 Aligned_cols=74 Identities=7% Similarity=0.149 Sum_probs=50.5
Q ss_pred EEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCC-CCccccCCCCeEEEEEcCCCCce-EEe-CCCCEEEEecCCCHHH
Q 008842 84 AIILPESIDQLANSVLCCRNESMELRVRCGGHSYE-GTSSFSSDGASFVILDMSNLNKI-SVD-LESETAWVQGGATLGE 160 (551)
Q Consensus 84 ~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~-g~~~~~~~g~~~vvIdl~~l~~i-~~d-~~~~~v~v~~G~~~~~ 160 (551)
..+.|+|.+|..++++. +. ...+.+||+++. ........ +..+||++++..+ .|. .+++.+++|+++++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~--p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~ 79 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDR--YRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQ 79 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCC--CCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHH
Confidence 57889999999888763 22 357899999962 11111111 2389999986544 333 2346799999999999
Q ss_pred HHH
Q 008842 161 TYS 163 (551)
Q Consensus 161 l~~ 163 (551)
+.+
T Consensus 80 l~~ 82 (291)
T PRK09971 80 IIE 82 (291)
T ss_pred Hhc
Confidence 975
No 39
>PRK09799 putative oxidoreductase; Provisional
Probab=94.16 E-value=0.16 Score=50.72 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=82.3
Q ss_pred EEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHHHH
Q 008842 84 AIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGETY 162 (551)
Q Consensus 84 ~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 162 (551)
....|+|.+|..++++ +++-...+.+||+++.-. ..... +.++||++++ ++ .+..+++.+++|+++++.++.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~-~~~~~--~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~ 76 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNAT-PTRTD--KKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLR 76 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhh-hCCCC--CCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHH
Confidence 3578999999988765 343345789999997311 11111 2389999985 44 344456789999999999998
Q ss_pred HHHHHc-CCc--cc-c-cCCCCCccccccccccCCccccccccCccccc-----eeeeEEEecCCcEEEccCCCchhHHH
Q 008842 163 SAISEA-SNT--HG-F-SAGSCPTVGVGGHIGGGGFGLLSRKYGLAADN-----VVDALLMDANGRLLNREAMGEDVFWA 232 (551)
Q Consensus 163 ~~l~~~-g~~--~~-~-~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~-----v~~~~vV~~~G~i~~~~~~~~dLf~a 232 (551)
+...-. .+. .. + ....-+..+|||.+..+-- ..|. .++.+|+..+++.+.. .|+|
T Consensus 77 ~~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~-- 141 (258)
T PRK09799 77 DARFIPAALREALGFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL-- 141 (258)
T ss_pred hCcccHHHHHHHHHHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc--
Confidence 732100 000 00 0 1122244568888764421 1333 2467777777754433 3433
Q ss_pred hhcCCCCcceeeEEEEEe
Q 008842 233 IRGGGGGVWGIVYAWKIK 250 (551)
Q Consensus 233 ~rG~g~g~fGiVt~~~~~ 250 (551)
.|. . -.|||++.+.
T Consensus 142 -~g~-~--~Eil~~I~iP 155 (258)
T PRK09799 142 -ACP-C--DRLLTEIIIP 155 (258)
T ss_pred -CCC-C--CcEEEEEEcC
Confidence 332 2 2589988765
No 40
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=94.07 E-value=0.48 Score=51.46 Aligned_cols=152 Identities=19% Similarity=0.223 Sum_probs=85.8
Q ss_pred ceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCC-CCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHH
Q 008842 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYE-GTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLG 159 (551)
Q Consensus 82 P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~-g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~ 159 (551)
...++.|+|.+|+.++++- +. ...+.+||+++. ........ ...+||++++.++ .+..+++.++||+++++.
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~--~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRD--LPDVIYVGQVAELKRIEETDDGIEIGAAVTLT 265 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCC--CCeEEECCCChhhccEEEcCCEEEEecCCcHH
Confidence 4568899999999988753 22 357899999972 11111111 1389999986544 344456789999999999
Q ss_pred HHHHHHHHcCCccc-----c-cCCCCCccccccccccCCccccccccCccccce-----eeeEE--EecCCcEEEccCCC
Q 008842 160 ETYSAISEASNTHG-----F-SAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNV-----VDALL--MDANGRLLNREAMG 226 (551)
Q Consensus 160 ~l~~~l~~~g~~~~-----~-~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v-----~~~~v--V~~~G~i~~~~~~~ 226 (551)
|+.+.+.++=..+. + ....-+..+|||.+..+.- ..|.. ++++| ...+|+.. .. =
T Consensus 266 el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~-vp--l 333 (467)
T TIGR02963 266 DAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRT-LP--L 333 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEE-Ee--H
Confidence 99876543200000 1 1123345568888865432 23332 23344 44556322 11 1
Q ss_pred chhHHHhhcCCCCcceeeEEEEEee
Q 008842 227 EDVFWAIRGGGGGVWGIVYAWKIKL 251 (551)
Q Consensus 227 ~dLf~a~rG~g~g~fGiVt~~~~~l 251 (551)
.|+|-..+--....--||+++.+..
T Consensus 334 ~dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 334 EDFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred HHhhcccccccCCCCceEEEEEecC
Confidence 3555433322122234999988763
No 41
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=92.92 E-value=0.35 Score=48.20 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=79.4
Q ss_pred EEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCC-CCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHHHH
Q 008842 85 IILPESIDQLANSVLCCRNESMELRVRCGGHSYE-GTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGETY 162 (551)
Q Consensus 85 vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~-g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~ 162 (551)
...|+|.+|..++++ +++-.-.+.+||+++. ..... . ..++||++++ .+ .|..+.+.+++|+++++.++.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~--~--~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~ 75 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRT--D--KKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLI 75 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhccc--C--CCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHH
Confidence 568999999888765 3332356789999973 22111 1 1388999885 44 344455789999999999987
Q ss_pred HH------HHHcCCcccccCCCCCccccccccccCCccccccccCccccc-----eeeeEEEecCCcEEEccCCCchhHH
Q 008842 163 SA------ISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADN-----VVDALLMDANGRLLNREAMGEDVFW 231 (551)
Q Consensus 163 ~~------l~~~g~~~~~~~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~-----v~~~~vV~~~G~i~~~~~~~~dLf~ 231 (551)
+. |.+.-..+ -....-+..++||.+..+.- ..|. .++.+|++.+++.+.. .|+|
T Consensus 76 ~~~~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a~p---------~~D~~~~LlaldA~v~l~~~r~vp~----~dF~- 140 (257)
T TIGR03312 76 DNELTPAALKEALGFV-YSRHIRNQATIGGEIAAFQS---------ESLLLPVLLALKATVVLANASQMDI----EDYL- 140 (257)
T ss_pred hCcchHHHHHHHHHHh-CCHHHhccccHHHHhhcCCC---------chHHHHHHHHcCCEEEEecCcEEeH----HHhc-
Confidence 52 21110000 01222345568888865431 1232 2456666666544433 2433
Q ss_pred HhhcCCCCcceeeEEEEEe
Q 008842 232 AIRGGGGGVWGIVYAWKIK 250 (551)
Q Consensus 232 a~rG~g~g~fGiVt~~~~~ 250 (551)
.|. .+ -+|+++.+.
T Consensus 141 --~g~-~~--Ell~~V~iP 154 (257)
T TIGR03312 141 --ASE-QR--ELIVEVIIP 154 (257)
T ss_pred --CCC-CC--cEEEEEEcC
Confidence 232 22 488888765
No 42
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=88.82 E-value=0.79 Score=47.16 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=50.0
Q ss_pred eEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCC-CCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHH
Q 008842 83 VAIILPESIDQLANSVLCCRNESMELRVRCGGHSYE-GTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGE 160 (551)
Q Consensus 83 ~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~-g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~ 160 (551)
-..+.|+|.+|..++++- ++ .-.+.+||+++. ..-.. ...+..+||++++.++ .|..+.+.+++|+++++.+
T Consensus 5 f~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~--~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRG--LGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred ceEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcc--cCCCCeEEECCCChhhccEEecCCEEEEeccCcHHH
Confidence 347889999998887653 22 346799999862 11111 1112389999976443 2334457899999999999
Q ss_pred HHH
Q 008842 161 TYS 163 (551)
Q Consensus 161 l~~ 163 (551)
+.+
T Consensus 79 l~~ 81 (321)
T TIGR03195 79 LAE 81 (321)
T ss_pred Hhh
Confidence 965
No 43
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=86.02 E-value=1.1 Score=44.95 Aligned_cols=71 Identities=8% Similarity=0.105 Sum_probs=48.0
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEcCCCCCC-CCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHHHHH
Q 008842 88 PESIDQLANSVLCCRNESMELRVRCGGHSYE-GTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGETYS 163 (551)
Q Consensus 88 p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~-g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~l~~ 163 (551)
|+|.+|+.++++- +. ...+.+||+++. ........ .+..+||++++..+ .|..+++.+++|+++++.++.+
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~-~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLP-MKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCC-CCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 7788888887764 22 357899999862 11111000 02389999987655 4555668899999999999964
No 44
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=82.43 E-value=2.1 Score=41.59 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred Hhhhhhcc-cHHHHHHHHhhcCCCCccc
Q 008842 506 WGEKYFLK-NYDRLVKAKTIIDPNNIFS 532 (551)
Q Consensus 506 ~~~~Y~G~-n~~RL~~IK~kyDP~~vF~ 532 (551)
|-...+|+ .+.-+++||+.+||+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 33444554 6999999999999999986
No 45
>PLN00192 aldehyde oxidase
Probab=78.30 E-value=5.5 Score=49.06 Aligned_cols=83 Identities=10% Similarity=0.110 Sum_probs=55.6
Q ss_pred ceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHH
Q 008842 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGE 160 (551)
Q Consensus 82 P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~ 160 (551)
....+.|+|.+|+.++++-....+-...+..||+++.-.-.. .. ..++||++++..+ .|..+++.++||+++++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~-~~--p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~e 309 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDE-EL--YDKYIDIRHIPELSMIRRDEKGIEIGAVVTISK 309 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeecc-CC--CCeEEEcCCChhhhcEEecCCEEEEeecCcHHH
Confidence 446889999999988875321011236778999996222111 11 2489999986554 3444567899999999999
Q ss_pred HHHHHHH
Q 008842 161 TYSAISE 167 (551)
Q Consensus 161 l~~~l~~ 167 (551)
+.+.+..
T Consensus 310 l~~~l~~ 316 (1344)
T PLN00192 310 AIEALRE 316 (1344)
T ss_pred HHHHHHh
Confidence 9876644
No 46
>PLN02906 xanthine dehydrogenase
Probab=77.64 E-value=4.7 Score=49.57 Aligned_cols=79 Identities=9% Similarity=0.125 Sum_probs=53.9
Q ss_pred eEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCC-CccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHH
Q 008842 83 VAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEG-TSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGE 160 (551)
Q Consensus 83 ~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g-~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~ 160 (551)
...+.|+|.+|+.++++- +. ...+.+||+++.- ....... ..++||++++..+ .|..+.+.++||+++++.+
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~--~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~e 302 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQ--YPVLISPTHVPELNAIKVKDDGLEIGAAVRLSE 302 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCC--CCeEEECCCChhhhcEEecCCEEEEecCCcHHH
Confidence 457899999999987653 21 2467899999721 1111111 1389999986554 3444567899999999999
Q ss_pred HHHHHHH
Q 008842 161 TYSAISE 167 (551)
Q Consensus 161 l~~~l~~ 167 (551)
+.+.|.+
T Consensus 303 l~~~l~~ 309 (1319)
T PLN02906 303 LQNLFRK 309 (1319)
T ss_pred HHHHHHH
Confidence 9986543
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=72.82 E-value=8.7 Score=47.32 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=54.1
Q ss_pred eEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCC-CCccccCCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHHH
Q 008842 83 VAIILPESIDQLANSVLCCRNESMELRVRCGGHSYE-GTSSFSSDGASFVILDMSNLNKI-SVDLESETAWVQGGATLGE 160 (551)
Q Consensus 83 ~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~-g~~~~~~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~~ 160 (551)
...+.|+|.+|+.++++. +. ..++..||+++. .......+- .++||++++..+ .+..+++.++||+++++.+
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~--~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~e 310 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFH--PVIISPDRIEELSVVNHTGDGLTLGAGLSLAQ 310 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCC--CeEEECCCChhhhcEEEcCCEEEEeccccHHH
Confidence 457889999999988754 22 356789999972 111111111 389999986555 3444567899999999999
Q ss_pred HHHHHH
Q 008842 161 TYSAIS 166 (551)
Q Consensus 161 l~~~l~ 166 (551)
+.+.|.
T Consensus 311 l~~~l~ 316 (1330)
T TIGR02969 311 VKDILA 316 (1330)
T ss_pred HHHHHH
Confidence 988654
No 48
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=68.57 E-value=11 Score=39.16 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=81.5
Q ss_pred ceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCcccc-CCCCeEEEEEcCCCCce-EEeCCCCEEEEecCCCHH
Q 008842 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFS-SDGASFVILDMSNLNKI-SVDLESETAWVQGGATLG 159 (551)
Q Consensus 82 P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~-~~g~~~vvIdl~~l~~i-~~d~~~~~v~v~~G~~~~ 159 (551)
-..++.|.+.+|...++.. +-+.++..|++++.=...-- .+- ..||-..++..+ +|+..++.+++|+|+++.
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l--~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t 276 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDL--NPVIFVGHLAELRRIEVSTGGLEIGAGVTYT 276 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhc--CCeEEecchhhhheeeecCCcEEEccCccHH
Confidence 4457889999999988732 33467777888863222110 111 145555554444 455567899999999999
Q ss_pred HHHHHHHHcCCccc--c-cCCCC---CccccccccccCC-ccccccccCccccceeeeEEEecCCcEEEccCCCchhHHH
Q 008842 160 ETYSAISEASNTHG--F-SAGSC---PTVGVGGHIGGGG-FGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWA 232 (551)
Q Consensus 160 ~l~~~l~~~g~~~~--~-~~g~~---~~vgvgG~~~~gg-~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a 232 (551)
|.+.+|..+=-.+. + --|.. +.-++||.+..|. +|-.. ..=-.+++++++-.|.-.+.- .=+|.|-+
T Consensus 277 ~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDtP-----PaLIALgA~ltLr~g~~~Rtl-PLe~~Fi~ 350 (493)
T COG4630 277 QAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDTP-----PALIALGATLTLRSGDGRRTL-PLEDYFIA 350 (493)
T ss_pred HHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCCC-----chhhhcCcEEEEEecCCcccc-cHHHHHHH
Confidence 99999875421111 0 01211 3335777776554 22111 111246778887766544321 12577877
Q ss_pred hhcC
Q 008842 233 IRGG 236 (551)
Q Consensus 233 ~rG~ 236 (551)
++--
T Consensus 351 Y~kq 354 (493)
T COG4630 351 YGKQ 354 (493)
T ss_pred hhhh
Confidence 7543
No 49
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=64.13 E-value=20 Score=36.20 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=51.4
Q ss_pred ceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCC-ce-EEeCCCCEEEEecCCCHH
Q 008842 82 PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLN-KI-SVDLESETAWVQGGATLG 159 (551)
Q Consensus 82 P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~-~i-~~d~~~~~v~v~~G~~~~ 159 (551)
+..+.+|.|.+|...+++ +.+ ...+.+|||++.-.--.. --.+.-+||+.++. .. .+..+.+.+++|+-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~-~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLG-IERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcc-cCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 556789999988777665 444 578899999973111000 01123789998874 22 333356779999999999
Q ss_pred HHHH
Q 008842 160 ETYS 163 (551)
Q Consensus 160 ~l~~ 163 (551)
|+.+
T Consensus 78 ei~~ 81 (284)
T COG1319 78 EIAR 81 (284)
T ss_pred HHHh
Confidence 9963
No 50
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=60.43 E-value=6.9 Score=41.84 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=22.8
Q ss_pred HHhhhhhc-ccHHHHHHHHhhcCCCCccc
Q 008842 505 VWGEKYFL-KNYDRLVKAKTIIDPNNIFS 532 (551)
Q Consensus 505 ~~~~~Y~G-~n~~RL~~IK~kyDP~~vF~ 532 (551)
.|.+..|| ..++-|++||+.+||+|+|+
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 34555566 57999999999999999986
No 51
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=48.75 E-value=13 Score=40.78 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.5
Q ss_pred Hhhhhhc-ccHHHHHHHHhhcCCCCcccCCCCCC
Q 008842 506 WGEKYFL-KNYDRLVKAKTIIDPNNIFSNQQGIP 538 (551)
Q Consensus 506 ~~~~Y~G-~n~~RL~~IK~kyDP~~vF~~~qsI~ 538 (551)
|-...|| +.++-+++||+.+||+++++----|+
T Consensus 440 ~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 440 QMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 3344556 67999999999999999998665553
No 52
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=41.94 E-value=1.3e+02 Score=32.13 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNESMELRVRCGG 114 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggG 114 (551)
+....|+.|+..|-..++.+.++++|+++.-||.|
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 35778999999999999999999999999999988
No 53
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=41.43 E-value=17 Score=38.07 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.0
Q ss_pred cc-HHHHHHHHhhcCCCCcccC
Q 008842 513 KN-YDRLVKAKTIIDPNNIFSN 533 (551)
Q Consensus 513 ~n-~~RL~~IK~kyDP~~vF~~ 533 (551)
.+ .+-.++||++|||+++|+-
T Consensus 324 ~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCCC
Confidence 44 6888999999999999963
No 54
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=39.95 E-value=30 Score=35.53 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=37.1
Q ss_pred CCCCCCcCcHHHhhhcccccccCCCCCCCceEEEeeCC------HHHHHHHHHHHHhCC------CeEEEEcCCC
Q 008842 53 HSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPES------IDQLANSVLCCRNES------MELRVRCGGH 115 (551)
Q Consensus 53 ~~~~~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s------~~dv~~~v~~a~~~~------~~~~vrggGh 115 (551)
|..|+...|.... ..-+.||+ ....+++|.. +++|..+++.+.+.+ +=|.+||||+
T Consensus 20 ITs~~gAa~~D~~--~~~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 20 ITSPTGAAIQDFL--RTLKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EeCCchHHHHHHH--HHHHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 3445566777654 33344664 4556677765 688999999998654 6678888885
No 55
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=31.53 E-value=62 Score=35.41 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=26.1
Q ss_pred CCceEEEeeCCHHHHHHHHHHHHhCC-CeEEE
Q 008842 80 PKPVAIILPESIDQLANSVLCCRNES-MELRV 110 (551)
Q Consensus 80 ~~P~~vv~p~s~~dv~~~v~~a~~~~-~~~~v 110 (551)
..|-..++|.|+++|..+++.|+++- .||..
T Consensus 150 G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 150 GFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred CceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 57889999999999999999999873 35544
No 56
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.01 E-value=41 Score=36.20 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCcCcHHHhhhcccccccCCCCCCCceEEEeeCCH------HHHHHHHHHHHhC--CCeEEEEcCCC
Q 008842 46 FPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESI------DQLANSVLCCRNE--SMELRVRCGGH 115 (551)
Q Consensus 46 ~~~~~~~~~~~~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~------~dv~~~v~~a~~~--~~~~~vrggGh 115 (551)
||....-|..|+...+.... ..-+.||+ .-..+++|..+ .+|..+++.+.+. .+=|.+||||+
T Consensus 134 ~p~~I~viTs~~gAa~~D~~--~~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 134 FPKRIGVITSPTGAAIRDIL--TVLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred CCCEEEEEeCCccHHHHHHH--HHHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 34444445556677777654 34456764 24566677665 8899999888874 66788888883
No 57
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=26.28 E-value=79 Score=34.16 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEE--cCCCC
Q 008842 90 SIDQLANSVLCCRNESMELRVR--CGGHS 116 (551)
Q Consensus 90 s~~dv~~~v~~a~~~~~~~~vr--ggGhs 116 (551)
|.+||+++|++|+-+|++|.+- .-||.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccc
Confidence 7899999999999999988774 34554
No 58
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.45 E-value=1.1e+02 Score=28.66 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=30.2
Q ss_pred ccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCCeEEE
Q 008842 73 RFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRV 110 (551)
Q Consensus 73 r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~v 110 (551)
||.+ +..|..||...+++++.++.+-|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 5653 46899999999999999999999999875443
No 59
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.30 E-value=47 Score=35.59 Aligned_cols=56 Identities=14% Similarity=0.279 Sum_probs=35.5
Q ss_pred CCCCCCcCcHHHhhhcccccccCCCCCCCceEEEeeCC------HHHHHHHHHHHHhCC---CeEEEEcCCC
Q 008842 53 HSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPES------IDQLANSVLCCRNES---MELRVRCGGH 115 (551)
Q Consensus 53 ~~~~~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s------~~dv~~~v~~a~~~~---~~~~vrggGh 115 (551)
|-.|......... ..-..||+ .-..+++|.. .+||.++|+.+++.+ +=|..||||+
T Consensus 141 ITS~tgAairDIl--~~~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 141 ITSPTGAALRDIL--HTLSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred EcCCchHHHHHHH--HHHHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 3344455555443 34456775 3455667665 589999999999876 3466666664
No 60
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=20.21 E-value=63 Score=28.75 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=28.1
Q ss_pred CCCcCcHHHhhhcccccccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCCeEEEEcCCC
Q 008842 56 EANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGH 115 (551)
Q Consensus 56 ~~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGh 115 (551)
|.++.|..-+.....+.++. .+.++|.++.++.+++|+.+......+
T Consensus 39 P~s~~Ygk~Lt~~e~~~~~~-------------p~~~~v~~V~~wL~~~G~~~~~~~~~~ 85 (143)
T PF09286_consen 39 PGSPNYGKYLTPEEFAALFA-------------PSPEDVAAVKSWLKSHGLTVVEVSANG 85 (143)
T ss_dssp TTSTTTT----HHHHHHHHS---------------HHHHHHHHHHHHHCT-EEEEEETTT
T ss_pred CCCcccccCCCHHHHHHHHC-------------CCHHHHHHHHHHHHHcCCceeEEeCCC
Confidence 44788876554344444443 368899999999999998877744433
Done!