BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008843
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 21/203 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKP-----SSNKAYKFAYVRQEDL 53
+G SG GK+TL+N++ PR + SG + ++G + + + V+Q+++
Sbjct: 373 VGMSGGGKSTLINLI-------PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425
Query: 54 FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
FS TV+E + L E V E + N+ F + L D+ VG+ V+ +SGG
Sbjct: 426 LFSD-TVKENILLGRPTATDE--EVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGG 481
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
+K+RLS+A + +P ++ DE T+ LD + EAL L++D T+I + R S
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA---HRLST 538
Query: 174 YFKFDDIVLLTEGKLVYAGPARD 196
D IV++ G +V G R+
Sbjct: 539 ITHADKIVVIENGHIVETGTHRE 561
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHL--SGLLEVNGKPSSN---KAYKFAYVRQEDLFF 55
+GP+G+GKT L ++AG H+ SG + ++GK ++ + + A+V Q F
Sbjct: 32 LGPTGAGKTLFLELIAG-------FHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLF 84
Query: 56 SQLTVRETLSLA---AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
+ V++ L +++ P+ + RD + LL D +SG
Sbjct: 85 PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL--------------DRNPLTLSG 130
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
GE++R++LA L+ +P ++ DEP + LD E E L L + + I +
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190
Query: 173 VYFKFDDIVLLTEGKLVYAG 192
D I ++ +GKL+ G
Sbjct: 191 ARIMADRIAVVMDGKLIQVG 210
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV-NGKPSSNKAYKFAYVRQEDL--FFSQ 57
MGPSGSGK+T+LN++ + P G + + N K + + +R++ + F Q
Sbjct: 37 MGPSGSGKSTMLNIIG--CLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
Query: 58 LTVRETLSLAAELQLPEI------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
+ L+ ++LP I +S EER + L ++ + + K +S
Sbjct: 92 FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL----KMAELEERFANHKPNQLS 147
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIH 167
GG+++R+++A L +P +I AD+PT LD+ EK+M+ L++L +DG TV+ H
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV-NGKPSSNKAYKFAYVRQEDL--FFSQ 57
MGPSGSGK+T+LN++ + P G + + N K + + +R++ + F Q
Sbjct: 37 MGPSGSGKSTMLNIIG--CLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
Query: 58 LTVRETLSLAAELQLPEI------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
+ L+ ++LP I +S EER + L ++ + + K +S
Sbjct: 92 FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL----KMAELEERFANHKPNQLS 147
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIH 167
GG+++R+++A L +P +I AD+PT LD+ EK+M+ L++L +DG TV+ H
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 24/202 (11%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKP--SSNKAY---KFAYVRQEDL 53
+GPSGSGK+T+L++L RL+ SG + ++G N + K V QE +
Sbjct: 376 VGPSGSGKSTVLSLLL-------RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428
Query: 54 FFSQLTVRETLSLAAELQLPEILSVEERD---EYVNSLLFKLGLVSCADSNVGDAKVRGI 110
FS ++ E ++ A+ P ++ EE E N++ F ++ VG+ V +
Sbjct: 429 LFS-CSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 484
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
SGG+K+R+++A L+ +P ++ DE T+ LDA V EAL +L DG TV+ H R
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAH--R 541
Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
S + + +L +GK+ G
Sbjct: 542 LSTIKNANMVAVLDQGKITEYG 563
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 1 MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+GPSG GK+TLL ++AG + + S L + G +N P + + + Q + L+
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAERGVGMVF--QSYALYPHLS 91
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
V E +S +L + + +R VN + L L +++ D K + +SGG+++R++
Sbjct: 92 VAENMSFGLKLAGAKKEVINQR---VNQVAEVLQL-----AHLLDRKPKALSGGQRQRVA 143
Query: 120 LACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
+ L+A PSV DEP + LD A + + +E R + G T+I H ++ D
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-D 202
Query: 179 DIVLLTEGKLVYAG 192
IV+L G++ G
Sbjct: 203 KIVVLDAGRVAQVG 216
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 24/202 (11%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKP--SSNKAY---KFAYVRQEDL 53
+GPSGSGK+T+L++L RL+ SG + ++G N + K V QE +
Sbjct: 407 VGPSGSGKSTVLSLLL-------RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 54 FFSQLTVRETLSLAAELQLPEILSVEERD---EYVNSLLFKLGLVSCADSNVGDAKVRGI 110
FS ++ E ++ A+ P ++ EE E N++ F ++ VG+ V +
Sbjct: 460 LFS-CSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 515
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
SGG+K+R+++A L+ +P ++ DE T+ LDA V EAL +L DG TV+ H
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHHL- 573
Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
S + + +L +GK+ G
Sbjct: 574 -STIKNANMVAVLDQGKITEYG 594
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 1 MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+GPSG GK+TLL ++AG + + S L + G +N P + + + Q + L+
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAERGVGMVF--QSYALYPHLS 91
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
V E +S +L + + +R VN + L L +++ D K + +SGG+++R++
Sbjct: 92 VAENMSFGLKLAGAKKEVINQR---VNQVAEVLQL-----AHLLDRKPKALSGGQRQRVA 143
Query: 120 LACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
+ L+A PSV DEP + LD A + + +E R + G T+I H ++ D
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-D 202
Query: 179 DIVLLTEGKLVYAG 192
IV+L G++ G
Sbjct: 203 KIVVLDAGRVAQVG 216
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 1 MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+GPSG GK+TLL ++AG + + S L + G +N P + + + Q + L+
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAERGVGMVF--QSYALYPHLS 91
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
V E +S +L + + +R VN + L L +++ D K + +SGG+++R++
Sbjct: 92 VAENMSFGLKLAGAKKEVINQR---VNQVAEVLQL-----AHLLDRKPKALSGGQRQRVA 143
Query: 120 LACELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
+ L+A PSV D+P + LD A + + +E R + G T+I H ++ D
Sbjct: 144 IGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-D 202
Query: 179 DIVLLTEGKLVYAG 192
IV+L G++ G
Sbjct: 203 KIVVLDAGRVAQVG 216
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 18/199 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+GP+G+GK+TLL +L G L S HL G +N A A +RQ +S+L
Sbjct: 43 IGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ-NLNSWQPKALARTRAVMRQ----YSELA 97
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
++S ++ ++R + + ++ + ++ A + R +SGGE++R+
Sbjct: 98 FPFSVSEVIQMGRAPYGGSQDR-QALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQ 151
Query: 120 LACELIA------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
LA L +P ++ DEPT+ LD + + + LRQL + +C +
Sbjct: 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLA 211
Query: 174 YFKFDDIVLLTEGKLVYAG 192
D I+LL +GKLV G
Sbjct: 212 ALYADRIMLLAQGKLVACG 230
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 18/200 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK----FAYVRQEDLFFS 56
+GP+G+GKTT L +++ + S SG++ V GK + ++ +Y+ +E +
Sbjct: 47 IGPNGAGKTTTLRIISTLIKPS-----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101
Query: 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
+ E L A +EE E ++ + D +V S G +
Sbjct: 102 NMQGIEYLRFVAGFYASSSSEIEEMVERATE-------IAGLGEKIKD-RVSTYSKGMVR 153
Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176
+L +A L+ +P + DEPT+GLD A +V + L+Q +Q+G T++ S H V F
Sbjct: 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFL 212
Query: 177 FDDIVLLTEGKLVYAGPARD 196
D I L+ G +V G +
Sbjct: 213 CDRIALIHNGTIVETGTVEE 232
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 19/177 (10%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV-NGKPSSNKAYKFAYVRQEDL--FFSQL 58
GPSGSGK+T LN++ + P G + + N K + + +R++ + F Q
Sbjct: 38 GPSGSGKSTXLNIIG--CLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 59 TVRETLSLAAELQLPEIL------SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
+ L+ ++LP I S EER + L L + + K +SG
Sbjct: 93 NLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL----EERFANHKPNQLSG 148
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQ 168
G+++R+++A L +P +I ADEPT LD+ EK+ + L++L +DG TV+ H
Sbjct: 149 GQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 1 MGPSGSGKTTLLNVLAG-QLMASPRLHLSG-LLEVNGK---PSSNKAYKFAYVRQEDLFF 55
+GPSG+GKTT + ++AG + ++ L+ L+ NGK P ++ K V Q +
Sbjct: 37 LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR--KIGMVFQTWALY 94
Query: 56 SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
LT E ++ + +R E V +L +V + R +SGG++
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--------DIHHVLNHFPRELSGGQQ 146
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVY 174
+R++LA L+ PS++ DEP + LDA + ++++ ++ G T++ H P ++
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIF 205
Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
D + +L +GKLV G D
Sbjct: 206 AIADRVGVLVKGKLVQVGKPED 227
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 25/206 (12%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ---------E 51
+G +G GK+TL G L S SG + + KP +R+ +
Sbjct: 40 LGGNGVGKSTLFQNFNGILKPS-----SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPD 94
Query: 52 DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
+ FS ++ A ++LPE +E + V++ L + G+ ++ D +S
Sbjct: 95 NQLFSASVYQDVSFGAVNMKLPE----DEIRKRVDNALKRTGI-----EHLKDKPTHCLS 145
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPR 170
G+KKR+++A L+ P V+ DEPT GLD ++M+ L ++ ++ G T+I + H
Sbjct: 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI- 204
Query: 171 GSVYFKFDDIVLLTEGKLVYAGPARD 196
V D++ ++ EG+++ G ++
Sbjct: 205 DIVPLYCDNVFVMKEGRVILQGNPKE 230
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNG------KPSSNKAYKFAYVRQED 52
+GPSG GK+T++ +L R + L G + ++G P ++ + A V QE
Sbjct: 1111 VGPSGCGKSTVVALL-------ERFYDTLGGEIFIDGSEIKTLNPEHTRS-QIAIVSQEP 1162
Query: 53 LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
F ++ E + + + VEE N F L ++ VGD + +SG
Sbjct: 1163 TLF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ-LSG 1220
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
G+K+R+++A L+ +P ++ DE T+ LD ++EKV++ A++G T I H R +
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDT-ESEKVVQEALDRAREGRTCIVIAH--RLN 1277
Query: 173 VYFKFDDIVLLTEGKLVYAG 192
D I +++ G ++ G
Sbjct: 1278 TVMNADCIAVVSNGTIIEKG 1297
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 23/203 (11%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYKF-----AYVRQEDL 53
+G SG GK+T++++L R + L G + ++G + +F A V QE
Sbjct: 450 VGSSGCGKSTIISLLL-------RYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA 502
Query: 54 FFSQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
F+ T+ E +SL E + E+++ + N+ F L + ++ VGD + +SG
Sbjct: 503 LFN-CTIEENISLGKEGITREEMVAA---CKMANAEKFIKTLPNGYNTLVGDRGTQ-LSG 557
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
G+K+R+++A L+ +P ++ DE T+ LDA V +AL + A+ G T I H R S
Sbjct: 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAH--RLS 614
Query: 173 VYFKFDDIVLLTEGKLVYAGPAR 195
D I+ G++V G R
Sbjct: 615 TIRNADLIISCKNGQVVEVGDHR 637
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 21/197 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
+G SG GK+T + ++ Q + P L G++ ++G+ ++ V QE + F
Sbjct: 422 VGNSGCGKSTTVQLM--QRLYDP---LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 56 SQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
+ T+ E + E + + EI E+ + N+ F + L D+ VG+ + +SGG+
Sbjct: 477 AT-TIAENIRYGREDVTMDEI---EKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQ 531
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ----PR 170
K+R+++A L+ +P ++ DE T+ LD ++E V++A A++G T I H+
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590
Query: 171 GSVYFKFDDIVLLTEGK 187
V FD V++ +G
Sbjct: 591 ADVIAGFDGGVIVEQGN 607
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+G SG GK+T++ +L + P ++G + ++GK K ++R + SQ +
Sbjct: 1065 VGSSGCGKSTVVQLL--ERFYDP---MAGSVFLDGKEI--KQLNVQWLRAQLGIVSQEPI 1117
Query: 61 RETLSLAAELQLPEILSVEERDEYV------NSLLFKLGLVSCADSNVGDAKVRGISGGE 114
S+A + + V +E V N F L ++ VGD + +SGG+
Sbjct: 1118 LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQ 1176
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
K+R+++A L+ P ++ DE T+ LD ++EKV++ A++G T I H R S
Sbjct: 1177 KQRIAIARALVRQPHILLLDEATSALDT-ESEKVVQEALDKAREGRTCIVIAH--RLSTI 1233
Query: 175 FKFDDIVLLTEGKL 188
D IV++ GK+
Sbjct: 1234 QNADLIVVIQNGKV 1247
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 24/251 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+GPSG GKTT L +LAG S ++ +L VN P K + V Q + +T
Sbjct: 35 LGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVL-VNDIPP--KYREVGMVFQNYALYPHMT 91
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
V E ++ + +S +E ++ V + KL + N+ D K +SGG+++R++
Sbjct: 92 VFENIAFPLRARR---ISKDEVEKRVVEIARKLLI-----DNLLDRKPTQLSGGQQQRVA 143
Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEA-LRQLAQD-GHTVICSIHQPRGSVYFKF 177
LA L+ P V+ DEP + LDA +M A ++ L Q+ G T + H +
Sbjct: 144 LARALVKQPKVLLFDEPLSNLDA-NLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMA 201
Query: 178 DDIVLLTEGKLV-YAGPAR--DEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVY 234
I + +GKLV Y P D P F P P FL D SV + +++
Sbjct: 202 SRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNP----PTNFLRDF-SVSVENKQTIL 256
Query: 235 LSQKRIDSLAE 245
I L E
Sbjct: 257 KRDDVIIKLPE 267
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 21/197 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
+G SG GK+T + QLM L G++ ++G+ ++ V QE + F
Sbjct: 422 VGNSGCGKSTTV-----QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 56 SQLTVRETLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
+ T+ E + E + + EI E+ + N+ F + L D+ VG+ + +SGG+
Sbjct: 477 AT-TIAENIRYGREDVTMDEI---EKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQ 531
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ----PR 170
K+R+++A L+ +P ++ DE T+ LD ++E V++A A++G T I H+
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590
Query: 171 GSVYFKFDDIVLLTEGK 187
V FD V++ +G
Sbjct: 591 ADVIAGFDGGVIVEQGN 607
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+G SG GK+T++ +L + P ++G + ++GK K ++R + SQ +
Sbjct: 1065 VGSSGCGKSTVVQLL--ERFYDP---MAGSVFLDGKEI--KQLNVQWLRAQLGIVSQEPI 1117
Query: 61 RETLSLAAELQLPEILSVEERDEYV------NSLLFKLGLVSCADSNVGDAKVRGISGGE 114
S+A + + V +E V N F L ++ VGD + +SGG+
Sbjct: 1118 LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQ 1176
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
K+R+++A L+ P ++ DE T+ LD ++EKV++ A++G T I H R S
Sbjct: 1177 KQRIAIARALVRQPHILLLDEATSALDT-ESEKVVQEALDKAREGRTCIVIAH--RLSTI 1233
Query: 175 FKFDDIVLLTEGKL 188
D IV++ GK+
Sbjct: 1234 QNADLIVVIQNGKV 1247
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 24/178 (13%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASP---RLHLSGLLEVN----GKPSSNKAYKFAYVRQEDL 53
+G SGSGK+TLL +L L+ +P ++ L G EV+ + S + K +V Q
Sbjct: 36 IGASGSGKSTLLYILG--LLDAPTEGKVFLEGK-EVDYTNEKELSLLRNRKLGFVFQFHY 92
Query: 54 FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG---I 110
+LT E + + +ER EY LL +LGL GD R +
Sbjct: 93 LIPELTALENVIVPMLKMGKPKKEAKERGEY---LLSELGL--------GDKLSRKPYEL 141
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
SGGE++R+++A L P +++ADEPT LD+ ++VM+ ++ + G +++ H+
Sbjct: 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 17/202 (8%)
Query: 1 MGPSGSGKTTLLNVLAG-QLMASPRLHLSG-LLEVNGK---PSSNKAYKFAYVRQEDLFF 55
+GPSG+GKTT + ++AG + ++ L+ L+ NGK P ++ K V Q +
Sbjct: 37 LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR--KIGMVFQTWALY 94
Query: 56 SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
LT E ++ + +R E V +L +V + R +SG ++
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--------DIHHVLNHFPRELSGAQQ 146
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVY 174
+R++LA L+ PS++ DEP + LDA + ++++ ++ G T++ H P ++
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIF 205
Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
D + +L +GKLV G D
Sbjct: 206 AIADRVGVLVKGKLVQVGKPED 227
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
+GPSGSGKTT+L ++AG + P G + + GK ++ + V Q F
Sbjct: 47 LGPSGSGKTTILRLIAG--LERP---TKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQH 101
Query: 58 LTVRETLSLA-AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116
+TV + +S E ++P+ +E D V LL + L S A+ + +SGG+++
Sbjct: 102 MTVYDNVSFGLREKRVPK----DEMDARVRELLRFMRLESYANRFPHE-----LSGGQQQ 152
Query: 117 RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYF 175
R++LA L P V+ DEP +D ++ +RQ+ + G T + H ++
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV 212
Query: 176 KFDDIVLLTEGKL 188
D +++L EG +
Sbjct: 213 A-DRVLVLHEGNV 224
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 26/201 (12%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY-----KFAYVRQEDLFFS 56
GPSG GK+T+ ++L + P +G + ++G+P N + + +V Q+ +
Sbjct: 35 GPSGGGKSTIFSLL--ERFYQP---TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89
Query: 57 QLTVRETLSLAAE-----LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
T+RE L+ E L ++L + +V ++ +L ++ VG+ V+ IS
Sbjct: 90 G-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL------NTEVGERGVK-IS 141
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
GG+++RL++A + +P ++ DE T LD+ V +AL L + G T + H R
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAH--RL 198
Query: 172 SVYFKFDDIVLLTEGKLVYAG 192
S D I + +G++ +G
Sbjct: 199 STIVDADKIYFIEKGQITGSG 219
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 39/232 (16%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-------L 53
+GPSGSGK+T L L L+ G + ++G K VR+E
Sbjct: 56 IGPSGSGKSTFLRCL--NLLED---FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 110
Query: 54 FFSQLTVRETLSLAAELQLPEILSV-----EERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
F +TV ++LA + V E+ + LL K+GL A A
Sbjct: 111 LFPHMTVLNNITLAP-------MKVRKWPREKAEAKAMELLDKVGLKDKAH-----AYPD 158
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
+SGG+ +R+++A L P ++ DEPT+ LD +V+ ++QLA +G T++ H+
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLA 220
G D ++ + G ++ G D F R P H FL+
Sbjct: 219 -MGFAREVGDRVLFMDGGYIIEEGKPED----LFDR-----PQHERTKAFLS 260
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 39/232 (16%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-------L 53
+GPSGSGK+T L L L+ G + ++G K VR+E
Sbjct: 35 IGPSGSGKSTFLRCL--NLLED---FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 89
Query: 54 FFSQLTVRETLSLAAELQLPEILSV-----EERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
F +TV ++LA + V E+ + LL K+GL A A
Sbjct: 90 LFPHMTVLNNITLAP-------MKVRKWPREKAEAKAMELLDKVGLKDKAH-----AYPD 137
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
+SGG+ +R+++A L P ++ DEPT+ LD +V+ ++QLA +G T++ H+
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLA 220
G D ++ + G ++ G D F R P H FL+
Sbjct: 198 -MGFAREVGDRVLFMDGGYIIEEGKPED----LFDR-----PQHERTKAFLS 239
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-----FAYVRQEDLFF 55
+G +GSGK+TL+N++ +L+ R G +EV+ K + V QE + F
Sbjct: 375 LGETGSGKSTLMNLIP-RLIDPER----GRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 56 SQLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111
S T++E L A + ++ E + + +++ + L DS V R S
Sbjct: 430 SG-TIKENLKWGREDATDDEIVEAAKIAQIHDFI------ISLPEGYDSRVERGG-RNFS 481
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171
GG+K+RLS+A L+ P V+ D+ T+ +D +++++ L++ + T I + P
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA 541
Query: 172 SVYFKFDDIVLLTEGKLVYAGPARD 196
+ D I++L EGK+ G ++
Sbjct: 542 LLA---DKILVLHEGKVAGFGTHKE 563
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 22/210 (10%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF------AYVRQEDLFF 55
G +GSGK+TLL ++AG + + SG + +G+ K Y+ A+ ED FF
Sbjct: 40 GNTGSGKSTLLQIVAGLIEPT-----SGDVLYDGE--RKKGYEIRRNIGIAFQYPEDQFF 92
Query: 56 SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
++ V + ++ A + P+ RD V + + V + D +SGGEK
Sbjct: 93 AE-RVFDEVAFAVKNFYPD------RDP-VPLVKKAMEFVGLDFDSFKDRVPFFLSGGEK 144
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
+R+++A ++ P ++ DEP GLD ++ + + G TVI H +V
Sbjct: 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVIN 203
Query: 176 KFDDIVLLTEGKLVYAGPARDEPLAYFSRF 205
D +V+L +GK V+ G + Y RF
Sbjct: 204 HVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 233
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 22/210 (10%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF------AYVRQEDLFF 55
G +GSGK+TLL ++AG + + SG + +G+ K Y+ A+ ED FF
Sbjct: 42 GNTGSGKSTLLQIVAGLIEPT-----SGDVLYDGE--RKKGYEIRRNIGIAFQYPEDQFF 94
Query: 56 SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
++ V + ++ A + P+ RD V + + V + D +SGGEK
Sbjct: 95 AE-RVFDEVAFAVKNFYPD------RDP-VPLVKKAMEFVGLDFDSFKDRVPFFLSGGEK 146
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
+R+++A ++ P ++ DEP GLD ++ + + G TVI H +V
Sbjct: 147 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVIN 205
Query: 176 KFDDIVLLTEGKLVYAGPARDEPLAYFSRF 205
D +V+L +GK V+ G + Y RF
Sbjct: 206 HVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+GP+GSGK+TL+NV+ G L A R++ N +P+ Y Q ++T
Sbjct: 39 IGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98
Query: 60 VRETLSLAAELQLPE-----------ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
V E L L E+ E I EE E +L L L D G+
Sbjct: 99 VLENL-LIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE---- 153
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
+SGG+ K + + L+ +P +I DEP G+ A + + +L G T + H
Sbjct: 154 -LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH- 211
Query: 169 PRGSVYFKF-DDIVLLTEGKLVYAGPARDE 197
R + + D + ++ G+++ G +E
Sbjct: 212 -RLDIVLNYIDHLYVMFNGQIIAEGRGEEE 240
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 27/199 (13%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS------NKAYKFAYVRQEDLF 54
+G +GSGKTTLL +LAG L A+ + L +G P+ N Y F + +
Sbjct: 43 VGKNGSGKTTLLKILAGLLAAAGEIFL------DGSPADPFLLRKNVGYVFQNPSSQII- 95
Query: 55 FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
TV E ++ + E+ L E + + +L +GL S + A +SGG+
Sbjct: 96 --GATVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGL-----SGLAAADPLNLSGGQ 145
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
K+RL++A L + DEP + LD ++ + L L +G +I H+ Y
Sbjct: 146 KQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELE---Y 202
Query: 175 FKFDDIVL-LTEGKLVYAG 192
D +L ++ G + + G
Sbjct: 203 LDDMDFILHISNGTIDFCG 221
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 8/197 (4%)
Query: 1 MGPSGSGKTTLLNVLAGQL-MASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+G SGSGK+T+ N+ + S + L G +V +N FA V Q F+ T
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDG-HDVRDYKLTNLRRHFALVSQNVHLFND-T 432
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
+ ++ AAE + +E+ +++ F + D+ +G+ +SGG+++R++
Sbjct: 433 IANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGLDTVIGENGT-SLSGGQRQRVA 490
Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179
+A L+ V+ DE T+ LD ++E+ ++A Q TV+ H R S + D+
Sbjct: 491 IARALLRDAPVLILDEATSALDT-ESERAIQAALDELQKNKTVLVIAH--RLSTIEQADE 547
Query: 180 IVLLTEGKLVYAGPARD 196
I+++ EG+++ G D
Sbjct: 548 ILVVDEGEIIERGRHAD 564
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK------FAYVRQEDLF 54
+G +G+GKTT L+ +AG + A G + NG+ +NK A V +
Sbjct: 38 IGANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKPAHVINRXGIALVPEGRRI 92
Query: 55 FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
F +LTV E L A + ++ E++ SL +L +G +SGGE
Sbjct: 93 FPELTVYENLXXGA-YNRKDKEGIKRDLEWIFSLFPRL---KERLKQLGGT----LSGGE 144
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
++ L++ L + P ++ DEP+ GL +V E ++++ Q+G T++ G++
Sbjct: 145 QQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALK 204
Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
VL T G++V G A +
Sbjct: 205 VAHYGYVLET-GQIVLEGKASE 225
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 17/175 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PSSNKAYKFAYVRQEDLFFSQLT 59
+GP+G+GKTT + +LAGQL+ + L E N + +A++ ++ +F +L
Sbjct: 109 VGPNGTGKTTAVKILAGQLIPN-------LCEDNDSWDNVIRAFRGNELQN---YFERLK 158
Query: 60 ---VRETLSLAAELQLPEILS--VEERDEYVNSL-LFKLGLVSCADSNVGDAKVRGISGG 113
+R + LP+ + V E + V+ + F+ + NV D ++ +SGG
Sbjct: 159 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 218
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
E +R+++A L+ + DEP++ LD Q KV +R+LA +G V+ H
Sbjct: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+GP+G GKTT + +LAG + P G +E + AYK Y++ E + TV
Sbjct: 374 VGPNGIGKTTFVKMLAG--VEEP---TEGKVEWD----LTVAYKPQYIKAE----YEGTV 420
Query: 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
E LS +L + Y LL LG++ D NV D +SGGE +R+++
Sbjct: 421 YELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAI 468
Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157
A L+ + DEP+ LD Q V A+R L +
Sbjct: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 17/175 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PSSNKAYKFAYVRQEDLFFSQLT 59
+GP+G+GKTT + +LAGQL+ + L E N + +A++ ++ +F +L
Sbjct: 123 VGPNGTGKTTAVKILAGQLIPN-------LCEDNDSWDNVIRAFRGNELQN---YFERLK 172
Query: 60 ---VRETLSLAAELQLPEILS--VEERDEYVNSL-LFKLGLVSCADSNVGDAKVRGISGG 113
+R + LP+ + V E + V+ + F+ + NV D ++ +SGG
Sbjct: 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 232
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
E +R+++A L+ + DEP++ LD Q KV +R+LA +G V+ H
Sbjct: 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+GP+G GKTT + +LAG + P G +E + AYK Y++ E + TV
Sbjct: 388 VGPNGIGKTTFVKMLAG--VEEP---TEGKVEWD----LTVAYKPQYIKAE----YEGTV 434
Query: 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
E LS +L + Y LL LG++ D NV D +SGGE +R+++
Sbjct: 435 YELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAI 482
Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157
A L+ + DEP+ LD Q V A+R L +
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 519
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 41/244 (16%)
Query: 1 MGPSGSGKTTLLNVLAG-------------QLMASPRLHLSGLLEVNGKPSSNKAYKFAY 47
+GPSG GKTT L ++AG +L+A P G K A
Sbjct: 35 LGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE---------KGIFVPPKDRDIAM 85
Query: 48 VRQEDLFFSQLTVRETLSLAAEL-QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAK 106
V Q + +TV + ++ +L ++P +E D+ V + LGL + K
Sbjct: 86 VFQSYALYPHMTVYDNIAFPLKLRKVPR----QEIDQRVREVAELLGLTELLNR-----K 136
Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICS 165
R +SGG+++R++L ++ P V DEP + LDA ++ L++L Q G T I
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV 196
Query: 166 IHQPRGSVYFKFDDIVLLTEGKLVYAG---PARDEPLAYFSRFGYTCPDHVNPAEFLADL 222
H ++ D I ++ G L G D+P F P P FL +
Sbjct: 197 THDQVEAMTMG-DRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSP----PMNFLDAI 251
Query: 223 ISVD 226
++ D
Sbjct: 252 VTED 255
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 9/191 (4%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFSQL 58
+G SG+GK+TL+ + L+ P G + V+G+ + +++ RQ + F
Sbjct: 37 IGASGAGKSTLIRCV--NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91
Query: 59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
+ + ++ + LP L +DE + L LV D + D+ +SGG+K+R+
Sbjct: 92 NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRV 149
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
++A L ++P V+ DE T+ LD ++E L+ + + I I V D
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD 209
Query: 179 DIVLLTEGKLV 189
+ +++ G+L+
Sbjct: 210 CVAVISNGELI 220
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 13/206 (6%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+GP+GSGK+TL+NV+ G L A R++ N +P+ Y Q ++T
Sbjct: 39 IGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98
Query: 60 VRETLSLA----AELQLPEILS---VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
V E L + E L + + + +E V L + S++ D K +SG
Sbjct: 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL--SHLYDRKAGELSG 156
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
G+ K + + L+ +P +I DEP G+ A + + +L G T + H R
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH--RLD 214
Query: 173 VYFKF-DDIVLLTEGKLVYAGPARDE 197
+ + D + ++ G+++ G +E
Sbjct: 215 IVLNYIDHLYVMFNGQIIAEGRGEEE 240
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLT 59
+GP+GSGK+TL+NV+ G L A R++ N +P+ Y Q ++T
Sbjct: 39 IGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98
Query: 60 VRETLSLAAELQLPE-----------ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVR 108
V E L L E+ E I EE E +L L L D G+
Sbjct: 99 VLENL-LIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE---- 153
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
+SGG+ K + + L+ +P +I D+P G+ A + + +L G T + H
Sbjct: 154 -LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH- 211
Query: 169 PRGSVYFKF-DDIVLLTEGKLVYAGPARDE 197
R + + D + ++ G+++ G +E
Sbjct: 212 -RLDIVLNYIDHLYVMFNGQIIAEGRGEEE 240
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 18/196 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQ 57
+GPSGSGK+TLL +AG + SG + + K + K V Q +
Sbjct: 35 LGPSGSGKSTLLYTIAGIYKPT-----SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89
Query: 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
+TV + ++ EL+ ++++ V +L L++ +SGG+++R
Sbjct: 90 MTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--------LSGGQQQR 141
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFK 176
+++A L+ P V+ DEP + LDA +V L++L ++ G T + H +
Sbjct: 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAM 200
Query: 177 FDDIVLLTEGKLVYAG 192
D I ++ EG+++ G
Sbjct: 201 ADRIAVIREGEILQVG 216
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 91/191 (47%), Gaps = 9/191 (4%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFSQL 58
+G SG+GK+TL+ + L+ P G + V+G+ + +++ RQ + F
Sbjct: 60 IGASGAGKSTLIRCV--NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 114
Query: 59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
+ + ++ + LP L +DE + L LV D + D+ +SGG+K+R+
Sbjct: 115 NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRV 172
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
++A L ++P V+ D+ T+ LD ++E L+ + + I I V D
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD 232
Query: 179 DIVLLTEGKLV 189
+ +++ G+L+
Sbjct: 233 CVAVISNGELI 243
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFF 55
+GPSG GKTT L +AG L R + + P K A V Q +
Sbjct: 38 LGPSGCGKTTTLRXIAG-LEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALY 96
Query: 56 SQLTVRETLSLAAEL-QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
TV + ++ +L ++P+ +E D+ V + LGL + K R +SGG+
Sbjct: 97 PHXTVYDNIAFPLKLRKVPK----QEIDKRVREVAEXLGLTELLNR-----KPRELSGGQ 147
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQ 168
++R++L +I P V DEP + LDA K L++L Q G T I H
Sbjct: 148 RQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHD 202
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 29/203 (14%)
Query: 1 MGPSGSGKTTLLNVLA-------GQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL 53
+GP+GSGKTT++N+L GQ++ +++ S+ V Q+ +
Sbjct: 387 VGPTGSGKTTIVNLLMRFYDVDRGQILVDG-------IDIRKIKRSSLRSSIGIVLQDTI 439
Query: 54 FFSQLTVRETLSL----AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRG 109
FS TV+E L A + ++ E + D ++ L G + N D
Sbjct: 440 LFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHL--PEGYETVLTDNGED----- 491
Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
+S G+++ L++ +A+P ++ DE T+ +D + EK ++A +G T I H
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDT-KTEKSIQAAMWKLMEGKTSIIIAH-- 548
Query: 170 RGSVYFKFDDIVLLTEGKLVYAG 192
R + D I++L +G++V G
Sbjct: 549 RLNTIKNADLIIVLRDGEIVEMG 571
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
G+SGG+++R+++A L+ +P ++ DE T+ LD +M + ++ + G TVI H
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 198
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
R S D I+++ +GK+V G ++ EP + +S
Sbjct: 199 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 235
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
G+SGG+++R+++A L+ +P ++ DE T+ LD +M + ++ + G TVI H
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 196
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
R S D I+++ +GK+V G ++ EP + +S
Sbjct: 197 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 233
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
G+SGG+++R+++A L+ +P ++ DE T+ LD +M + ++ + G TVI H
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 202
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
R S D I+++ +GK+V G ++ EP + +S
Sbjct: 203 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
G+SGG+++R+++A L+ +P ++ DE T+ LD +M + ++ + G TVI H
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 198
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
R S D I+++ +GK+V G ++ EP + +S
Sbjct: 199 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 235
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169
+SGG+++R+S+A L P V+ DEPT+ LD +V+ ++QLA++G T++ H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE- 212
Query: 170 RGSVYFKFDDIVLLTEGKLVYAG 192
G ++ L +GK+ G
Sbjct: 213 MGFARHVSSHVIFLHQGKIEEEG 235
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFSQL 58
+G SG+GK+TL+ + L+ P G + V+G+ + +++ RQ F
Sbjct: 60 IGASGAGKSTLIRCV--NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGXIFQHF 114
Query: 59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
+ + ++ + LP L +DE + L LV D + D+ +SGG+K+R+
Sbjct: 115 NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRV 172
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178
++A L ++P V+ D+ T+ LD ++E L+ + + I I V D
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICD 232
Query: 179 DIVLLTEGKLV 189
+ +++ G+L+
Sbjct: 233 CVAVISNGELI 243
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
G+SGG+++R+++A L+ +P ++ D+ T+ LD +M + ++ + G TVI H
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAH- 202
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
R S D I+++ +GK+V G ++ EP + +S
Sbjct: 203 -RLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 14/199 (7%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+G +GSGK+T+ +L A + + G VN ++ V Q+ + F++
Sbjct: 52 VGHTGSGKSTIAKLLYRFYDAEGDIKIGGK-NVNKYNRNSIRSIIGIVPQDTILFNETIK 110
Query: 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
L + E++ + + + F L D+ VG+ ++ +SGGE++R+++
Sbjct: 111 YNILYGKLDATDEEVIKATKSAQLYD---FIEALPKKWDTIVGNKGMK-LSGGERQRIAI 166
Query: 121 ACELIASPSVIYADEPTTGLDA---FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
A L+ P ++ DE T+ LD+ + +K +E LR+ T+I H R S
Sbjct: 167 ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK----NRTLIIIAH--RLSTISSA 220
Query: 178 DDIVLLTEGKLVYAGPARD 196
+ I+LL +GK+V G +D
Sbjct: 221 ESIILLNKGKIVEKGTHKD 239
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 1 MGPSGSGKTTLLNVLAGQ---LMASPRLHLSG--LLEVNGKPSSNKAYKFAYVRQEDLFF 55
MGP+G+GK+TL +LAG + + L G +LE++ + K A+ Q +
Sbjct: 35 MGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF--QYPVEV 92
Query: 56 SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
+T+ L LA + +L + V E + + L L+ +S + G SGGEK
Sbjct: 93 PGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLDWDESYLSRYLNEGFSGGEK 149
Query: 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYF 175
KR + L+ P+ DE +GLD + V + + + H R Y
Sbjct: 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYI 209
Query: 176 KFDDIVLLTEGKLVYAG 192
+ D + ++ +G++V G
Sbjct: 210 QPDKVHVMMDGRVVATG 226
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 15/174 (8%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRL-----HLSGLLEV-NGKPSSNKAYKFAYVRQEDLF 54
+GP+G+GK+T + +LAGQL+ P L G++ G N K +
Sbjct: 53 VGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVV 110
Query: 55 FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
Q + + A + ++ E+L + + ++ L L NV + +++ +SGGE
Sbjct: 111 KPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALEL-----ENVLEREIQHLSGGE 163
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
+R+++A L+ + + + DEP++ LD Q A+R+L+++G +V+ H
Sbjct: 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+GP+G GKTT + LAG + P G +E + AYK Y++ + + TV
Sbjct: 318 VGPNGIGKTTFVKXLAG--VEEP---TEGKIEWD----LTVAYKPQYIKAD----YEGTV 364
Query: 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
E LS +L + Y LL LG++ D V + +SGGE +R+++
Sbjct: 365 YELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNE-----LSGGELQRVAI 412
Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157
A L+ + DEP+ LD Q V A+R L +
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXE 449
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
G+SGG+++R+++A L+ +P ++ DE T+ LD +M + ++ + G TVI I
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI--IIA 195
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
R S D I+++ +GK+V G ++ EP + +S
Sbjct: 196 ARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 233
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168
G+SGG+++R+++A L+ +P ++ DE T+ LD +M + ++ + G TVI I
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI--IIA 201
Query: 169 PRGSVYFKFDDIVLLTEGKLVYAGPARD---EPLAYFS 203
R S D I+++ +GK+V G ++ EP + +S
Sbjct: 202 ARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 18/199 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG---KPSSNKAYKFAYVRQEDLFFSQ 57
+GP+G+GK+ L ++AG + P G + +NG P + +V Q+ F
Sbjct: 30 LGPTGAGKSVFLELIAG--IVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
L+V ++ ERD V + KLG+ +++ D K +SGGE++R
Sbjct: 85 LSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGI-----AHLLDRKPARLSGGERQR 134
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
++LA L+ P ++ DEP + +D +ME LR + ++ I +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194
Query: 178 DDIVLLTEGKLVYAGPARD 196
D++ ++ G++V G ++
Sbjct: 195 DEVAVMLNGRIVEKGKLKE 213
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
G +G+GKTTLLN+L A+ SG + + GK Y VRQ F S +
Sbjct: 54 GLNGAGKTTLLNILNAYEPAT-----SGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLE 108
Query: 62 E------TLSLAAELQLPEILSVEERDEYV----NSLLFKLGLVSCADSNVGDAKVRGIS 111
+ + + I ++ D+ + + LL +G + A +G +S
Sbjct: 109 KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGY-----LS 163
Query: 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR- 170
GEK+R+ +A L P V+ DEP GLD F A + + ++ D + + I+
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLD-FIARESLLSILDSLSDSYPTLAXIYVTHF 222
Query: 171 -GSVYFKFDDIVLLTEGKLVYAGPARD 196
+ F I+LL +G+ + G D
Sbjct: 223 IEEITANFSKILLLKDGQSIQQGAVED 249
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK------PSSNKA----YKFAYVRQ 50
MGP+GSGK+TL LAG+ G +E GK P F Y +
Sbjct: 33 MGPNGSGKSTLSATLAGR---EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 89
Query: 51 EDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
+Q ++ L+ + E L +R ++ + + K+ L+ + + + G
Sbjct: 90 IPGVSNQFFLQTALNAVRSYRGQETL---DRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 146
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
SGGEKKR + + P + DE +GLD + V + + L + I H R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 206
Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
Y K D + +L +G++V +G
Sbjct: 207 ILDYIKPDYVHVLYQGRIVKSG 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK------PSSNKA----YKFAYVRQ 50
MGP+GSGK+TL LAG+ G +E GK P F Y +
Sbjct: 52 MGPNGSGKSTLSATLAGR---EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 108
Query: 51 EDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGI 110
+Q ++ L+ + E L +R ++ + + K+ L+ + + + G
Sbjct: 109 IPGVSNQFFLQTALNAVRSYRGQETL---DRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 165
Query: 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170
SGGEKKR + + P + DE +GLD + V + + L + I H R
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225
Query: 171 GSVYFKFDDIVLLTEGKLVYAG 192
Y K D + +L +G++V +G
Sbjct: 226 ILDYIKPDYVHVLYQGRIVKSG 247
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASP---RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ 57
+GPSG GKTT L ++AG + P R++ G +V P ++ + Q +
Sbjct: 43 LGPSGCGKTTTLRMIAG--LEEPTEGRIYF-GDRDVTYLPPKDRNISMVF--QSYAVWPH 97
Query: 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
+TV E ++ +++ +++R + LL L++ + +SGG+++R
Sbjct: 98 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--------LSGGQRQR 149
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
+++A ++ P V+ DEP + LDA + +++L Q + +
Sbjct: 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 209
Query: 178 DDIVLLTEGKLVYAG 192
D I ++ G+L+ G
Sbjct: 210 DRIAVMNRGQLLQIG 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASP---RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQ 57
+GPSG GKTT L ++AG + P R++ G +V P ++ + Q +
Sbjct: 44 LGPSGCGKTTTLRMIAG--LEEPTEGRIYF-GDRDVTYLPPKDRNISMVF--QSYAVWPH 98
Query: 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
+TV E ++ +++ +++R + LL L++ + +SGG+++R
Sbjct: 99 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--------LSGGQRQR 150
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177
+++A ++ P V+ DEP + LDA + +++L Q + +
Sbjct: 151 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 210
Query: 178 DDIVLLTEGKLVYAG 192
D I ++ G+L+ G
Sbjct: 211 DRIAVMNRGQLLQIG 225
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 18/202 (8%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL-- 58
+G SGSGK+T+ +++ R + E+ + Y A +R + SQ
Sbjct: 375 VGRSGSGKSTIASLIT-------RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVH 427
Query: 59 ----TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
TV ++ A Q +EE ++ F + + D+ +G+ V +SGG+
Sbjct: 428 LFNDTVANNIAYARTEQYSR-EQIEEAARMAYAMDFINKMDNGLDTVIGENGVL-LSGGQ 485
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174
++R+++A L+ ++ DE T+ LD ++E+ ++A Q T + H R S
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDT-ESERAIQAALDELQKNRTSLVIAH--RLSTI 542
Query: 175 FKFDDIVLLTEGKLVYAGPARD 196
K D+IV++ +G +V G D
Sbjct: 543 EKADEIVVVEDGVIVERGTHND 564
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
+GP+G+GK+TLL +AG M S + G ++ G+P + A K A R + SQ
Sbjct: 32 VGPNGAGKSTLLARMAG--MTSGK----GSIQFAGQPLEAWSATKLALHRA---YLSQ-- 80
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
++T A + L++ + D+ LL + D +G + + +SGGE +R+
Sbjct: 81 -QQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ-LSGGEWQRVR 136
Query: 120 LACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
LA ++ A+P+ ++ D+P LD Q + + L L+Q G ++ S H +
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196
Query: 173 VYFKFDDIVLLTEGKLVYAGPARDEPL 199
+ LL GK++ +G R+E L
Sbjct: 197 LRHAH-RAWLLKGGKMLASG-RREEVL 221
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 16/157 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
+GP+GSGK+T+ +L Q + P G L ++GKP +++ A V QE F
Sbjct: 49 VGPNGSGKSTVAALL--QNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF 103
Query: 56 SQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK 115
+ +++E ++ Q P + + + F GL D+ V +A + +SGG++
Sbjct: 104 GR-SLQENIAYGLT-QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQR 160
Query: 116 KRLSLACELIASPSVIYADEPTTGLDA---FQAEKVM 149
+ ++LA LI P V+ D+ T+ LDA Q E+++
Sbjct: 161 QAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 197
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
+GP+GSGK+T+ +L Q + P G + ++G+P + + A V QE L F
Sbjct: 51 VGPNGSGKSTVAALL--QNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105
Query: 56 SQLTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
+ + RE ++ L + EI +V + F G D+ VG+ + +SGG
Sbjct: 106 GR-SFRENIAYGLTRTPTMEEITAVAMESGAHD---FISGFPQGYDTEVGETGNQ-LSGG 160
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGS 172
+++ ++LA LI P ++ D+ T+ LDA +V L + + TV+ HQ S
Sbjct: 161 QRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQL--S 218
Query: 173 VYFKFDDIVLLTEGKLVYAG 192
+ + I+ L EG + G
Sbjct: 219 LAERAHHILFLKEGSVCEQG 238
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
+GP+G+GK+TLL +AG M S + G ++ G+P + A K A R + SQ
Sbjct: 32 VGPNGAGKSTLLARMAG--MTSGK----GSIQFAGQPLEAWSATKLALHRA---YLSQ-- 80
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
++T A + L++ + D+ LL + D +G + + +SGGE +R+
Sbjct: 81 -QQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ-LSGGEWQRVR 136
Query: 120 LACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
LA ++ A+P+ ++ D+P LD Q + + L L+Q G ++ S H +
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196
Query: 173 VYFKFDDIVLLTEGKLVYAGPARDEPL 199
+ LL GK++ +G R+E L
Sbjct: 197 LRHAH-RAWLLKGGKMLASG-RREEVL 221
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 27/214 (12%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+GPSG+GK+T+L +L S SG + ++G+ S A +R Q TV
Sbjct: 86 VGPSGAGKSTILRLLFRFYDIS-----SGCIRIDGQDISQVTQ--ASLRSHIGVVPQDTV 138
Query: 61 RETLSLAAELQLPEILSVEERDEYVNS--------LLFKLGLVSCADSNVGDAKVRGISG 112
++A ++ + + + E + F G + VG+ ++ +SG
Sbjct: 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY----RTQVGERGLK-LSG 193
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
GEK+R+++A ++ +P +I DE T+ LD + +L ++ + T++ + R S
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA---HRLS 250
Query: 173 VYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFG 206
D I+++ +G +V G R E L SR G
Sbjct: 251 TVVNADQILVIKDGCIVERG--RHEAL--LSRGG 280
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 55 FSQLTVRETLSLAAELQLPE---------ILSVEERDEYVNSLLFKLGLVSCADSNVGDA 105
F++L++ E L L L E + +E+R E+ L +GL S
Sbjct: 409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF----LVDVGLEYLTLSRSATT 464
Query: 106 KVRGISGGEKKRLSLACELIAS-PSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163
+SGGE +R+ LA ++ + VIY DEPT GL E++++ L++L G+TVI
Sbjct: 465 ----LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520
Query: 164 CSIHQ 168
H
Sbjct: 521 VVEHD 525
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 110 ISGGEKKRLSLACEL---IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
+SGGE +R+ LA EL ++ DEPT GL K++E L +L G+TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 167 HQPRGSVYFKFDDIVLL-----TEGKLVYAGPARDE----PLAYFSRF 205
H V D I+ L EG + A +E P +Y RF
Sbjct: 866 HNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRF 911
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+G +G GKTT+L +LAG+++ + + N K ++ K ++ +F +L
Sbjct: 31 LGKNGVGKTTVLKILAGEIIPN-------FGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCAD--------SNVGDAKVRGISG 112
E L + ++Q E S + VN +L K+ D +N+ + +SG
Sbjct: 84 NE-LKIVHKIQYVEYASKFLKGT-VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSG 141
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS 165
G +RL +A L+ V D+P++ LD + + +A+R+L ++ + ++
Sbjct: 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+GP+G GKTT +L G++ A G + K +Y Q TV
Sbjct: 300 LGPNGIGKTTFARILVGEITADE-----------GSVTPEKQI-LSYKPQRIFPNYDGTV 347
Query: 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
++ L A++ + LS + + +L L +SNV D +SGGE ++L +
Sbjct: 348 QQYLENASK----DALSTSSW--FFEEVTKRLNLHRLLESNVND-----LSGGELQKLYI 396
Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
A L + D+P++ LD + V +A++++ ++ V I S++ D
Sbjct: 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADR 455
Query: 181 VLLTEGKLVYAGPA 194
+++ +G+ AG A
Sbjct: 456 IIVFKGEPEKAGLA 469
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 23/175 (13%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
+GP+G+GK+TLL AG G ++ G+P + A K A R + SQ
Sbjct: 32 VGPNGAGKSTLLARXAGXTSGK------GSIQFAGQPLEAWSATKLALHRA---YLSQ-- 80
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
++T A + L++ + D+ LL + D +G + + +SGGE +R+
Sbjct: 81 -QQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ-LSGGEWQRVR 136
Query: 120 LACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
LA ++ A+P+ ++ DEP LD Q + + L L+Q G ++ S H
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSH 191
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR 61
GP+G GKTTLL ++ L L G + NG P + K ++ +E + +++V
Sbjct: 42 GPNGIGKTTLLKTISTYLKP-----LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVE 96
Query: 62 ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA 121
+ L A L ++ N ++ L V D K+ +S G +R+ LA
Sbjct: 97 DYLKAVASLYGVKVNK--------NEIMDALESVEVLDLK---KKLGELSQGTIRRVQLA 145
Query: 122 CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICS 165
L+ + + D+P +D KV++++ ++ ++ VI S
Sbjct: 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 23/175 (13%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLT 59
+GP+G+GK+TLL AG G ++ G+P + A K A R + SQ
Sbjct: 32 VGPNGAGKSTLLARXAGXTSGK------GSIQFAGQPLEAWSATKLALHRA---YLSQ-- 80
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
++T A + L++ + D+ LL + D +G + + +SGGE +R+
Sbjct: 81 -QQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ-LSGGEWQRVR 136
Query: 120 LACELI-----ASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
LA ++ A+P+ ++ DEP LD Q + + L L Q G ++ S H
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSH 191
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 110 ISGGEKKRLSLACELIASP---SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
+SGGE +R+ LA EL S +V DEPTTGL E++ L +L G+TVI
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 167 HQ 168
H+
Sbjct: 791 HK 792
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 18/199 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
+GP+GSGK+T+ +L Q + P G + ++G+P + + A V QE L F
Sbjct: 51 VGPNGSGKSTVAALL--QNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105
Query: 56 SQLTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
+ + RE ++ L + EI +V + F G D+ VG+ + +SGG
Sbjct: 106 GR-SFRENIAYGLTRTPTMEEITAVAMESGAHD---FISGFPQGYDTEVGETGNQ-LSGG 160
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
+++ ++LA LI P ++ D T+ LDA +V L + + + I Q + S+
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ-QLSL 219
Query: 174 YFKFDDIVLLTEGKLVYAG 192
+ I+ L EG + G
Sbjct: 220 AERAHHILFLKEGSVCEQG 238
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 31/213 (14%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+G G GK++LL+ L ++ + G + + G AYV Q+ + ++
Sbjct: 37 VGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS--------VAYVPQQ-AWIQNDSL 82
Query: 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCAD-SNVGDAKVRGISGGEKKRLS 119
RE + +L+ P SV + +LL L ++ D + +G+ V +SGG+K+R+S
Sbjct: 83 RENILFGCQLEEPYYRSVIQ----ACALLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVS 137
Query: 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEAL---RQLAQDGHTVICSIHQPRGSVYFK 176
LA + ++ + D+P + +DA + + E + + + ++ T I H S +
Sbjct: 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-KTRILVTHSM--SYLPQ 194
Query: 177 FDDIVLLTEGKLVYAGP-----ARDEPLAYFSR 204
D I++++ GK+ G ARD A F R
Sbjct: 195 VDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 110 ISGGEKKRLSLACELI--ASPSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
+SGGE +R+ LA EL ++ +Y DEPTTGL ++++ L +L +G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 167 HQ 168
H
Sbjct: 604 HN 605
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 110 ISGGEKKRLSLACELIAS-PSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
+SGGE +R+ LA ++ + V+Y DEP+ GL ++++ L+ + G+T+I H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 168 QPRGSVYFKFDDIVLLTEGKLVYAGPA 194
D+ +L L+ GP
Sbjct: 263 ----------DEDTMLAADYLIDIGPG 279
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 100 SNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159
+++ + +SGG+++ + +A + + +I DEPT+ LD + V+ L LAQ
Sbjct: 119 THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 160 H-TVICSIHQPRGSV 173
+ TV+ + HQP V
Sbjct: 179 NMTVVFTTHQPNQVV 193
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLH--LSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL 58
+G SGSGK+T+ +++ R + G + ++G + Y A +R + SQ
Sbjct: 375 VGRSGSGKSTIASLIT-------RFYDIDEGHILMDGHDL--REYTLASLRNQVALVSQN 425
Query: 59 ------TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
TV ++ A + +EE ++ F + + D+ +G+ V +SG
Sbjct: 426 VHLFNDTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSG 483
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
G+++R+++A L+ ++ DE T+ LD + AL +L Q T + H R S
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAH--RLS 540
Query: 173 VYFKFDDIVLLTEGKLVYAG 192
+ D+IV++ +G +V G
Sbjct: 541 TIEQADEIVVVEDGIIVERG 560
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 110 ISGGEKKRLSLACELI--ASPSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
+SGGE +R+ LA EL ++ +Y DEPTTGL ++++ L +L +G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 167 HQ 168
H
Sbjct: 906 HN 907
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 110 ISGGEKKRLSLACELIAS-PSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
+SGGE +R+ LA ++ + V+Y DEP+ GL ++++ L+ + G+T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 168 QPRGSVYFKFDDIVLLTEGKLVYAGPA 194
D+ +L L+ GP
Sbjct: 565 ----------DEDTMLAADYLIDIGPG 581
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 110 ISGGEKKRLSLACELI--ASPSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
+SGGE +R+ LA EL ++ +Y DEPTTGL ++++ L +L +G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 167 HQ 168
H
Sbjct: 906 HN 907
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 110 ISGGEKKRLSLACELIAS-PSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
+SGGE +R+ LA ++ + V+Y DEP+ GL ++++ L+ G+T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 168 Q 168
Sbjct: 565 D 565
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 27/145 (18%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLT 59
MG +G+GKTTL+ +LAG L + L V+ KP A KF VRQ LFF ++
Sbjct: 384 MGENGTGKTTLIKLLAGALKPDEGQDIPKL-NVSMKPQK-IAPKFPGTVRQ--LFFKKI- 438
Query: 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119
R +++N + ++ D +V+ +SGGE +R++
Sbjct: 439 ---------------------RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVA 477
Query: 120 LACELIASPSVIYADEPTTGLDAFQ 144
+ L + DEP+ LD+ Q
Sbjct: 478 IVLALGIPADIYLIDEPSAYLDSEQ 502
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 100 SNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159
NV + +SGGE +R ++ + V DEP++ LD Q + +R L
Sbjct: 212 ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 160 HTVICSIH 167
VIC H
Sbjct: 272 KYVICVEH 279
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTV 60
+G S SGK+T++ + L + R+ LSG + GK +R+E+L +
Sbjct: 40 VGESASGKSTIIEAMTKTLPPNGRI-LSGRVLYKGK-------DLLTMREEELRKIRWKE 91
Query: 61 RETLSLAAELQLPEILSVEER--------------DEYVNSLLFKLGLVSCADSNVGDAK 106
+ AA+ L + V E E + KL +V V ++
Sbjct: 92 IALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSY 151
Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150
+SGG K+R+ +A L+ P V+ DEPT+ LD +++
Sbjct: 152 PLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 110 ISGGEKKRLSLACEL---IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
+SGGE +R+ LA EL +V DEPTTGL K++ + L G+TVI
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 167 HQ 168
H
Sbjct: 924 HN 925
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 110 ISGGEKKRLSLACELIAS-PSVIYA-DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH 167
+SGGE +R+ LA ++ + V+Y DEP+ GL +++E L +L G+T+I H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 168 Q 168
Sbjct: 582 D 582
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 40/202 (19%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVR----QEDLFF-- 55
G +GSGKT+LL ++ G+L AS G+++ +G+ S +F+++ +E++ F
Sbjct: 71 GSTGSGKTSLLMLILGELEASE-----GIIKHSGRVSF--CSQFSWIMPGTIKENIIFGV 123
Query: 56 SQLTVR-ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
S R +++ A +LQ +I E+D N++L + G+ +SGG+
Sbjct: 124 SYDEYRYKSVVKACQLQ-QDITKFAEQD---NTVLGEGGVT--------------LSGGQ 165
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICS-IHQPRG 171
+ R+SLA + + D P LD F E+V E+ + +A ++ S + R
Sbjct: 166 RARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR- 224
Query: 172 SVYFKFDDIVLLTEGKLVYAGP 193
K D I++L +G + G
Sbjct: 225 ----KADKILILHQGSSYFYGT 242
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 40/202 (19%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVR----QEDLFF-- 55
G +GSGKT+LL ++ G+L AS G+++ +G+ S +F+++ +E++ F
Sbjct: 71 GSTGSGKTSLLMLILGELEASE-----GIIKHSGRVSF--CSQFSWIMPGTIKENIIFGV 123
Query: 56 SQLTVR-ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
S R +++ A +LQ +I E+D N++L + G+ +SGG+
Sbjct: 124 SYDEYRYKSVVKACQLQ-QDITKFAEQD---NTVLGEGGVT--------------LSGGQ 165
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICS-IHQPRG 171
+ R+SLA + + D P LD F E+V E+ + +A ++ S + R
Sbjct: 166 RARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR- 224
Query: 172 SVYFKFDDIVLLTEGKLVYAGP 193
K D I++L +G + G
Sbjct: 225 ----KADKILILHQGSSYFYGT 242
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 35/199 (17%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF---AYVRQEDLFFSQL 58
G +GSGKT+LL ++ G+L AS G+++ +G+ S + + +++ + S
Sbjct: 71 GSTGSGKTSLLMLILGELEASE-----GIIKHSGRVSFCSQFSWIMPGTIKENIIGVSYD 125
Query: 59 TVR-ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
R +++ A +LQ +I E+D N++L + G+ +SGG++ R
Sbjct: 126 EYRYKSVVKACQLQ-QDITKFAEQD---NTVLGEGGVT--------------LSGGQRAR 167
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICS-IHQPRGSVY 174
+SLA + + D P LD F E+V E+ + +A ++ S + R
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR---- 223
Query: 175 FKFDDIVLLTEGKLVYAGP 193
K D I++L +G + G
Sbjct: 224 -KADKILILHQGSSYFYGT 241
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP--SSN-----KAYKFAYVRQEDL 53
+G SG GKTTLL LAG P SG + ++GK S N + + Y+ QE +
Sbjct: 36 IGASGCGKTTLLRCLAG--FEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV 90
Query: 54 FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
F LTV ++A L + + +ER + + ++L G+ S + +SGG
Sbjct: 91 LFPHLTVYR--NIAYGLGNGKGRTAQER-QRIEAMLELTGI-----SELAGRYPHELSGG 142
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL-RQLAQDGHTVICSIHQPRGS 172
+++R +LA L P +I DEP + LD ++ E + L +G + + H +
Sbjct: 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA 202
Query: 173 VYFKFDDIVLLTEGKLV 189
+ + D I ++ +G+++
Sbjct: 203 LQYA-DRIAVMKQGRIL 218
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAY-VRQEDLFFSQLT 59
+G +GSGK+TLL+ L + + G V+ + + ++ A+ V + +F T
Sbjct: 53 LGRTGSGKSTLLSAFLRLLNTEGEIQIDG---VSWDSITLEQWRKAFGVIPQKVFIFSGT 109
Query: 60 VRETLSLAAELQLPEILSVEER-------DEYVNSLLFKLGLVSCADSNVGDAKVRGISG 112
R+ L A EI V + +++ L F L C +S
Sbjct: 110 FRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV-----------LSH 158
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172
G K+ + LA +++ ++ DEP+ LD + + L+Q D ++C + R
Sbjct: 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILC---EARIE 215
Query: 173 VYFKFDDIVLLTEGKL 188
+ D +++ E K+
Sbjct: 216 AMLECDQFLVIEENKV 231
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 102 VGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
V +++RG+SGG+K +L LA P +I DEPT LD + +AL++
Sbjct: 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 11/50 (22%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ 50
+GP+G+GK+TL+NVL G+L+ + +G+ +++ + AY++Q
Sbjct: 705 IGPNGAGKSTLINVLTGELLPT-----------SGEVYTHENCRIAYIKQ 743
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 40/210 (19%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE-DLFFSQLTV 60
GP+G GK+TL+ +A +V+G P+ + + YV + D S +V
Sbjct: 468 GPNGCGKSTLMRAIANG-------------QVDGFPTQEEC-RTVYVEHDIDGTHSDTSV 513
Query: 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL 120
L E S E + L + G D + + +SGG K +L+L
Sbjct: 514 ---LDFVFE-------SGVGTKEAIKDKLIEFGFT---DEMIA-MPISALSGGWKMKLAL 559
Query: 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180
A ++ + ++ DEPT LD ++ L I SI SV+ D++
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG------ITSITISHDSVF--LDNV 611
Query: 181 VLLTEGKLVYAGPARDEPLAYFSRFGYTCP 210
E + Y G + F+ F CP
Sbjct: 612 C---EYIINYEGLKLRKYKGNFTEFVKKCP 638
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 102 VGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
V +++RG+SGG+K +L LA P +I DEPT LD + +AL++
Sbjct: 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 11/50 (22%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ 50
+GP+G+GK+TL+NVL G+L+ + +G+ +++ + AY++Q
Sbjct: 705 IGPNGAGKSTLINVLTGELLPT-----------SGEVYTHENCRIAYIKQ 743
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
+ +SGG K +L+LA ++ + ++ DEPT LD ++ L I SI
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG------ITSI 599
Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCP 210
SV+ D++ E + Y G + F+ F CP
Sbjct: 600 TISHDSVF--LDNVC---EYIINYEGLKLRKYKGNFTEFVKKCP 638
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 18/199 (9%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-----AYVRQEDLFF 55
+GP+GSGK+T+ +L Q + P G + ++G+P + + A V QE L F
Sbjct: 51 VGPNGSGKSTVAALL--QNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105
Query: 56 SQLTVRETLS--LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
+ + RE ++ L + EI +V + F G D+ VG+ + ++ G
Sbjct: 106 GR-SFRENIAYGLTRTPTMEEITAVAMESGAHD---FISGFPQGYDTEVGETGNQ-LAVG 160
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173
+++ ++LA LI P ++ D T+ LDA +V L + + + I Q + S+
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ-QLSL 219
Query: 174 YFKFDDIVLLTEGKLVYAG 192
+ I+ L EG + G
Sbjct: 220 AERAHHILFLKEGSVCEQG 238
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 102 VGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155
V +++RG+SGG+K +L LA P +I DEPT LD + +AL++
Sbjct: 888 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 941
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 11/50 (22%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQ 50
+GP+G+GK+TL+NVL G+L+ + +G+ +++ + AY++Q
Sbjct: 699 IGPNGAGKSTLINVLTGELLPT-----------SGEVYTHENCRIAYIKQ 737
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSI 166
+ +SGG K +L+LA ++ + ++ DEPT LD ++ L I SI
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG------ITSI 593
Query: 167 HQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCP 210
SV+ D++ E + Y G + F+ F CP
Sbjct: 594 TISHDSVF--LDNVC---EYIINYEGLKLRKYKGNFTEFVKKCP 632
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 54/209 (25%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL--- 58
G +GSGKT+LL ++ G+L AS G+++ +G+ S F SQ
Sbjct: 71 GSTGSGKTSLLMLILGELEASE-----GIIKHSGRVS---------------FCSQFSWI 110
Query: 59 ---TVRETLSLAAELQLPEILSVEERDEY-----VNSLLFKLGLVSCADSN---VGDAKV 107
T++E I+S DEY V + + + A+ + +G+ V
Sbjct: 111 MPGTIKEN-----------IISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICS 165
+SGG++ R+SLA + + D P LD F E+V E+ + +A ++ S
Sbjct: 160 T-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 166 -IHQPRGSVYFKFDDIVLLTEGKLVYAGP 193
+ R K D I++L +G + G
Sbjct: 219 KMEHLR-----KADKILILHQGSSYFYGT 242
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 42/203 (20%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVR----QEDLF--- 54
G +GSGKT+LL ++ G+L AS G+++ +G+ S +F+++ +E++
Sbjct: 71 GSTGSGKTSLLMLILGELEASE-----GIIKHSGRVSF--CSQFSWIMPGTIKENIIRGV 123
Query: 55 -FSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG 113
+ + + + A +LQ +I E+D N++L + G+ +SGG
Sbjct: 124 SYDEYRYKSVVK-ACQLQ-QDITKFAEQD---NTVLGEGGVT--------------LSGG 164
Query: 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICS-IHQPR 170
++ R+SLA + + D P LD F E+V E+ + +A ++ S + R
Sbjct: 165 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR 224
Query: 171 GSVYFKFDDIVLLTEGKLVYAGP 193
K D I++L +G + G
Sbjct: 225 -----KADKILILHQGSSYFYGT 242
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 32/170 (18%)
Query: 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-----KPSSN--KAYKFAYVRQEDL 53
+GP+GSGKTTLL ++G L S + ++G +EV + S+N +AY+
Sbjct: 36 LGPNGSGKTTLLRAISGLLPYSGNIFING-MEVRKIRNYIRYSTNLPEAYEIG------- 87
Query: 54 FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSL-LFKLGLVSCADSNVGDAKVRGISG 112
+TV + + L EL+ +RD ++ L KLG + K+ +S
Sbjct: 88 ----VTVNDIVYLYEELKGL------DRDLFLEMLKALKLG------EEILRRKLYKLSA 131
Query: 113 GEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162
G+ + + L + P ++ DEP +DA + + +++ ++G V
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILV 181
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF---AYVRQEDLFFSQL 58
G +G+GKT+LL ++ G+L S G ++ +G+ S + + +++ +F
Sbjct: 41 GSTGAGKTSLLMMIMGELEPSE-----GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSY 95
Query: 59 TVRETLSLAAELQLPEILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
S+ QL E +S E+D V +G+ + +SGG++ R
Sbjct: 96 DEYRYRSVIKACQLEEDISKFAEKDNIV----------------LGEGGIT-LSGGQRAR 138
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICSIHQPRGSVYF 175
+SLA + + D P LD +++ E+ + +A ++ S +
Sbjct: 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK---- 194
Query: 176 KFDDIVLLTEGKLVYAG 192
K D I++L EG + G
Sbjct: 195 KADKILILHEGSSYFYG 211
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF---AYVRQEDLFFSQL 58
G +G+GKT+LL ++ G+L S G ++ +G+ S + + +++ +F
Sbjct: 53 GSTGAGKTSLLMMIMGELEPSE-----GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSY 107
Query: 59 TVRETLSLAAELQLPEILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR 117
S+ QL E +S E+D V +G+ + +SGG++ R
Sbjct: 108 DEYRYRSVIKACQLEEDISKFAEKDNIV----------------LGEGGIT-LSGGQRAR 150
Query: 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICSIHQPRGSVYF 175
+SLA + + D P LD +++ E+ + +A ++ S +
Sbjct: 151 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK---- 206
Query: 176 KFDDIVLLTEGKLVYAG 192
K D I++L EG + G
Sbjct: 207 KADKILILHEGSSYFYG 223
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 31/196 (15%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS--SNKAYKFAYVRQEDLFFSQLT 59
G +G+GKT+LL ++ G+L S G ++ +G+ S S ++ +E++
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSE-----GKIKHSGRISFCSQNSWIMPGTIKENIIGVSYD 125
Query: 60 VRETLSLAAELQLPEILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
S+ QL E +S E+D V +G+ + +SGG++ R+
Sbjct: 126 EYRYRSVIKACQLEEDISKFAEKDNIV----------------LGEGGIT-LSGGQRARI 168
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICSIHQPRGSVYFK 176
SLA + + D P LD +++ E+ + +A ++ S + K
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK----K 224
Query: 177 FDDIVLLTEGKLVYAG 192
D I++L EG + G
Sbjct: 225 ADKILILHEGSSYFYG 240
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 31/196 (15%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS--SNKAYKFAYVRQEDLFFSQLT 59
G +G+GKT+LL ++ G+L S G ++ +G+ S S ++ +E++
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSE-----GKIKHSGRISFCSQNSWIMPGTIKENIIGVSYD 125
Query: 60 VRETLSLAAELQLPEILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
S+ QL E +S E+D V +G+ + +SGG++ R+
Sbjct: 126 EYRYRSVIKACQLEEDISKFAEKDNIV----------------LGEGGIT-LSGGQRARI 168
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICSIHQPRGSVYFK 176
SLA + + D P LD +++ E+ + +A ++ S + K
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK----K 224
Query: 177 FDDIVLLTEGKLVYAG 192
D I++L EG + G
Sbjct: 225 ADKILILHEGSSYFYG 240
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 108 RGISGGEKKRLSLACEL----IASPSV--IYADEPTTGLDAFQAEKVMEALRQLAQDGHT 161
RG+SGGE+ +S++ + +AS + + DE + LD EK+ L++L +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 162 VICSIHQPRGSVYF 175
++ H S F
Sbjct: 338 IVFITHDREFSEAF 351
>pdb|3T0E|E Chain E, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 373
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSV-QCR 131
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
P Q K + + QD T C++ Q + V FK D +VL
Sbjct: 132 SPRG--KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSV-QCR 131
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
P Q K + + QD T C++ Q + V FK D +VL
Sbjct: 132 SPRG--KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 108 RGISGGEKK--RLSLACELIASPS----VIYADEPTTGLDAFQAEKVMEALRQLAQDGHT 161
RG+SGGE+ +SLA L S + DE + LD EK+ L++L +
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 162 VICSIHQPRGSVYF 175
++ H S F
Sbjct: 338 IVFITHDREFSEAF 351
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 31/196 (15%)
Query: 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS--SNKAYKFAYVRQEDLFFSQLT 59
G +G+GKT+LL ++ G+L S G ++ +G+ S S ++ +E++
Sbjct: 41 GSTGAGKTSLLMMIMGELEPSE-----GKIKHSGRISFCSQFSWIMPGTIKENIIGVSYD 95
Query: 60 VRETLSLAAELQLPEILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL 118
S+ QL E +S E+D V +G+ + +SGG++ R+
Sbjct: 96 EYRYRSVIKACQLEEDISKFAEKDNIV----------------LGEGGIT-LSGGQRARI 138
Query: 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICSIHQPRGSVYFK 176
SLA + + D P LD +++ E+ + +A ++ S + K
Sbjct: 139 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK----K 194
Query: 177 FDDIVLLTEGKLVYAG 192
D I++L EG + G
Sbjct: 195 ADKILILHEGSSYFYG 210
>pdb|1CDU|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Phe 43 Replaced By Val
Length = 178
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSVQCRS 132
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
+ Q K + + QD T C++ Q + V FK D +VL
Sbjct: 133 PRGKNI---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
pdb|1CDH|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
pdb|1CDJ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4
Length = 178
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSVQCRS 132
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
+ Q K + + QD T C++ Q + V FK D +VL
Sbjct: 133 PRGKNI---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|2B4C|C Chain C, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
pdb|2QAD|B Chain B, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|F Chain F, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 181
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSVQCRS 132
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
+ Q K + + QD T C++ Q + V FK D +VL
Sbjct: 133 PRGKNI---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|1CDI|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
Length = 179
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 84 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSVQCRS 133
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
+ Q K + + QD T C++ Q + V FK D +VL
Sbjct: 134 PRGKNI---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
>pdb|1CDY|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Gly 47 Replaced By Ser
Length = 178
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSVQCRS 132
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
+ Q K + + QD T C++ Q + V FK D +VL
Sbjct: 133 PRGKNI---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|3S5L|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 87 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSV-QCR 135
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
P Q K + + QD T C++ Q + V FK D +VL
Sbjct: 136 SPRG--KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 181
>pdb|3CD4|A Chain A, Refinement And Analysis Of The First Two Domains Of Human
Cd4
Length = 182
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSVQCRS 132
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
+ Q K + + QD T C++ Q + V FK D +VL
Sbjct: 133 PRGKNI---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 38/200 (19%)
Query: 2 GPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGK-----PSSNKAYKFAYVRQEDLFF 55
G +G+GKT+LL ++ G+L S ++ SG + + P + K A V ++ +
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRY 130
Query: 56 SQLTVRETLSLAAELQLPEILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE 114
S+ QL E +S E+D V +G+ + +SGG+
Sbjct: 131 R--------SVIKACQLEEDISKFAEKDNIV----------------LGEGGIT-LSGGQ 165
Query: 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA--LRQLAQDGHTVICSIHQPRGS 172
+ R+SLA + + D P LD +++ E+ + +A ++ S +
Sbjct: 166 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK- 224
Query: 173 VYFKFDDIVLLTEGKLVYAG 192
K D I++L EG + G
Sbjct: 225 ---KADKILILHEGSSYFYG 241
>pdb|2NXY|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed With
Cd4 And Antibody 17b
pdb|2NY6|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
pdb|3JWD|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|D Chain D, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWO|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 184
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 84 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSV-QCR 132
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
P Q K + + QD T C++ Q + V FK D +VL
Sbjct: 133 SPRG--KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
>pdb|3O2D|A Chain A, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 188
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSV-QCR 131
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
P Q K + + QD T C++ Q + V FK D +VL
Sbjct: 132 SPRG--KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|3S4S|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 87 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSV-QCR 135
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
P Q K + + QD T C++ Q + V FK D +VL
Sbjct: 136 SPRG--KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 181
>pdb|3LQA|C Chain C, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 192
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSV-QCR 131
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
P Q K + + QD T C++ Q + V FK D +VL
Sbjct: 132 SPRG--KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZJ|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYAD 134
I VE++ E V L+F GL + +D++ + G+ L+L +SPSV
Sbjct: 83 ICEVEDQKEEVQLLVF--GLTANSDTH--------LLQGQSLTLTLESPPGSSPSVQCRS 132
Query: 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182
+ Q K + + QD T C++ Q + V FK D +VL
Sbjct: 133 PRGKNI---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 94 LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153
+V ++ GD V G + R+ L + P + A EP T D EK+ +AL
Sbjct: 377 VVGLKETITGDTLV----GEDAPRVILESIEVPEPVIDVAIEPKTKADQ---EKLSQALA 429
Query: 154 QLAQDGHTVICSIHQPRGS 172
+LA++ T S H GS
Sbjct: 430 RLAEESPTFSVSTHPETGS 448
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,367,263
Number of Sequences: 62578
Number of extensions: 612676
Number of successful extensions: 1731
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 163
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)